locus-tag class description ND011_00005 PF00308 Bacterial dnaA protein ND011_00005 PF08299 Bacterial dnaA protein helix-turn-helix ND011_00005 PF11638 DnaA N-terminal domain ND011_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ND011_00010 PF02767 DNA polymerase III beta subunit, central domain ND011_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ND011_00015 PF02463 RecF/RecN/SMC N terminal domain ND011_00020 PF01751 Toprim domain ND011_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ND011_00020 PF00204 DNA gyrase B ND011_00020 PF18053 DNA gyrase B subunit insert domain ND011_00030 PF12566 Protein of unknown function (DUF3748) ND011_00030 PF07676 WD40-like Beta Propeller Repeat ND011_00035 PF07119 Protein of unknown function (DUF1375) ND011_00040 PF00011 Hsp20/alpha crystallin family ND011_00045 PF00011 Hsp20/alpha crystallin family ND011_00050 PF02080 TrkA-C domain ND011_00050 PF06826 Predicted Permease Membrane Region ND011_00055 PF00155 Aminotransferase class I and II ND011_00060 PF13488 Glycine zipper ND011_00060 PF00691 OmpA family ND011_00080 PF03352 Methyladenine glycosylase ND011_00090 PF02091 Glycyl-tRNA synthetase alpha subunit ND011_00095 PF05746 DALR anticodon binding domain ND011_00095 PF02092 Glycyl-tRNA synthetase beta subunit ND011_00100 PF11254 Protein of unknown function (DUF3053) ND011_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND011_00130 PF02378 Phosphotransferase system, EIIC ND011_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND011_00135 PF01232 Mannitol dehydrogenase Rossmann domain ND011_00135 PF08125 Mannitol dehydrogenase C-terminal domain ND011_00140 PF05068 Mannitol repressor ND011_00145 PF10928 Protein of unknown function (DUF2810) ND011_00150 PF03473 MOSC domain ND011_00150 PF03475 3-alpha domain ND011_00155 PF02203 Tar ligand binding domain homologue ND011_00155 PF00672 HAMP domain ND011_00155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND011_00160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND011_00160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND011_00165 PF02634 FdhD/NarQ family ND011_00175 PF09163 Formate dehydrogenase N, transmembrane ND011_00175 PF13247 4Fe-4S dicluster domain ND011_00180 PF01292 Prokaryotic cytochrome b561 ND011_00185 PF04216 Protein involved in formate dehydrogenase formation ND011_00190 PF03841 L-seryl-tRNA selenium transferase ND011_00190 PF12390 Selenocysteine synthase N terminal ND011_00195 PF09106 Elongation factor SelB, winged helix ND011_00195 PF00009 Elongation factor Tu GTP binding domain ND011_00195 PF09107 Elongation factor SelB, winged helix ND011_00195 PF03144 Elongation factor Tu domain 2 ND011_00200 PF01427 D-ala-D-ala dipeptidase ND011_00205 PF07690 Major Facilitator Superfamily ND011_00210 PF01757 Acyltransferase family ND011_00220 PF13356 Arm DNA-binding domain ND011_00220 PF14659 Phage integrase, N-terminal SAM-like domain ND011_00220 PF00589 Phage integrase family ND011_00230 PF04606 Ogr/Delta-like zinc finger ND011_00255 PF17392 Urocanase C-terminal domain ND011_00255 PF17391 Urocanase N-terminal domain ND011_00255 PF01175 Urocanase Rossmann-like domain ND011_00260 PF00221 Aromatic amino acid lyase ND011_00265 PF00324 Amino acid permease ND011_00275 PF12146 Serine aminopeptidase, S33 ND011_00280 PF08019 Phosphoethanolamine transferase EptA/EptB ND011_00280 PF00884 Sulfatase ND011_00285 PF00196 Bacterial regulatory proteins, luxR family ND011_00285 PF00072 Response regulator receiver domain ND011_00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_00290 PF07730 Histidine kinase ND011_00290 PF05231 MASE1 ND011_00295 PF07690 Major Facilitator Superfamily ND011_00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND011_00310 PF00528 Binding-protein-dependent transport system inner membrane component ND011_00315 PF12911 N-terminal TM domain of oligopeptide transport permease C ND011_00315 PF00528 Binding-protein-dependent transport system inner membrane component ND011_00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND011_00320 PF00005 ABC transporter ND011_00325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND011_00325 PF00005 ABC transporter ND011_00330 PF11658 Cellulose biosynthesis protein BcsG ND011_00335 PF11120 Cellulose biosynthesis protein BcsF ND011_00340 PF10995 Cellulose biosynthesis GIL ND011_00350 PF06564 Cellulose biosynthesis protein BcsQ ND011_00355 PF03552 Cellulose synthase ND011_00355 PF07238 PilZ domain ND011_00355 PF00535 Glycosyl transferase family 2 ND011_00360 PF03170 Bacterial cellulose synthase subunit ND011_00365 PF01270 Glycosyl hydrolases family 8 ND011_00370 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ND011_00375 PF00563 EAL domain ND011_00375 PF17154 Gammaproteobacterial periplasmic sensor domain ND011_00375 PF00990 Diguanylate cyclase, GGDEF domain ND011_00375 PF00672 HAMP domain ND011_00380 PF00375 Sodium:dicarboxylate symporter family ND011_00385 PF00675 Insulinase (Peptidase family M16) ND011_00385 PF05193 Peptidase M16 inactive domain ND011_00390 PF00294 pfkB family carbohydrate kinase ND011_00395 PF01361 Tautomerase enzyme ND011_00400 PF00563 EAL domain ND011_00405 PF02611 CDP-diacylglycerol pyrophosphatase ND011_00410 PF03631 Virulence factor BrkB ND011_00415 PF03466 LysR substrate binding domain ND011_00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_00420 PF00375 Sodium:dicarboxylate symporter family ND011_00425 PF01053 Cys/Met metabolism PLP-dependent enzyme ND011_00430 PF11924 Inverse autotransporter, beta-domain ND011_00430 PF07979 Intimin C-type lectin domain ND011_00430 PF02369 Bacterial Ig-like domain (group 1) ND011_00430 PF09134 Invasin, domain 3 ND011_00435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND011_00435 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND011_00440 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ND011_00445 PF01432 Peptidase family M3 ND011_00450 PF04445 Putative SAM-dependent methyltransferase ND011_00455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ND011_00455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ND011_00460 PF00582 Universal stress protein family ND011_00465 PF10625 Universal stress protein B (UspB) ND011_00470 PF01384 Phosphate transporter family ND011_00480 PF01810 LysE type translocator ND011_00485 PF00583 Acetyltransferase (GNAT) family ND011_00495 PF17954 Quercetinase C-terminal cupin domain ND011_00495 PF02678 Pirin ND011_00500 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND011_00500 PF00356 Bacterial regulatory proteins, lacI family ND011_00505 PF02447 GntP family permease ND011_00510 PF01202 Shikimate kinase ND011_00515 PF01914 MarC family integral membrane protein ND011_00520 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND011_00520 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND011_00525 PF06580 Histidine kinase ND011_00525 PF07694 5TMR of 5TMR-LYT ND011_00530 PF02806 Alpha amylase, C-terminal all-beta domain ND011_00530 PF00128 Alpha amylase, catalytic domain ND011_00530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND011_00535 PF00128 Alpha amylase, catalytic domain ND011_00535 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND011_00535 PF18390 Glycogen debranching enzyme C-terminal domain ND011_00540 PF00483 Nucleotidyl transferase ND011_00545 PF00534 Glycosyl transferases group 1 ND011_00545 PF08323 Starch synthase catalytic domain ND011_00550 PF00343 Carbohydrate phosphorylase ND011_00555 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ND011_00555 PF01266 FAD dependent oxidoreductase ND011_00560 PF08220 DeoR-like helix-turn-helix domain ND011_00560 PF00455 DeoR C terminal sensor domain ND011_00565 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ND011_00565 PF01694 Rhomboid family ND011_00570 PF00581 Rhodanese-like domain ND011_00575 PF00196 Bacterial regulatory proteins, luxR family ND011_00575 PF17874 MalT-like TPR region ND011_00580 PF00343 Carbohydrate phosphorylase ND011_00585 PF02446 4-alpha-glucanotransferase ND011_00590 PF01106 NifU-like domain ND011_00590 PF01521 Iron-sulphur cluster biosynthesis ND011_00595 PF00156 Phosphoribosyl transferase domain ND011_00600 PF00561 alpha/beta hydrolase fold ND011_00610 PF09012 FeoC like transcriptional regulator ND011_00615 PF07664 Ferrous iron transport protein B C terminus ND011_00615 PF17910 FeoB cytosolic helical domain ND011_00615 PF02421 Ferrous iron transport protein B ND011_00615 PF07670 Nucleoside recognition ND011_00620 PF04023 FeoA domain ND011_00625 PF09371 Tex-like protein N-terminal domain ND011_00625 PF16921 Tex protein YqgF-like domain ND011_00625 PF17674 HHH domain ND011_00625 PF00575 S1 RNA binding domain ND011_00650 PF03449 Transcription elongation factor, N-terminal ND011_00650 PF01272 Transcription elongation factor, GreA/GreB, C-term ND011_00655 PF00486 Transcriptional regulatory protein, C terminal ND011_00655 PF00072 Response regulator receiver domain ND011_00660 PF00512 His Kinase A (phospho-acceptor) domain ND011_00660 PF00672 HAMP domain ND011_00660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_00665 PF01293 Phosphoenolpyruvate carboxykinase ND011_00670 PF01430 Hsp33 protein ND011_00675 PF01479 S4 domain ND011_00680 PF13419 Haloacid dehalogenase-like hydrolase ND011_00685 PF07095 Intracellular growth attenuator protein IgaA ND011_00690 PF00293 NUDIX domain ND011_00695 PF17092 Penicillin-binding protein OB-like domain ND011_00695 PF00912 Transglycosylase ND011_00695 PF00905 Penicillin binding protein transpeptidase domain ND011_00720 PF00263 Bacterial type II and III secretion system protein ND011_00720 PF03958 Bacterial type II/III secretion system short domain ND011_00725 PF01202 Shikimate kinase ND011_00730 PF01761 3-dehydroquinate synthase ND011_00735 PF05036 Sporulation related domain ND011_00740 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND011_00745 PF00834 Ribulose-phosphate 3 epimerase family ND011_00750 PF13419 Haloacid dehalogenase-like hydrolase ND011_00755 PF00579 tRNA synthetases class I (W and Y) ND011_00760 PF14824 Sirohaem biosynthesis protein central ND011_00760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND011_00760 PF10414 Sirohaem synthase dimerisation region ND011_00765 PF01226 Formate/nitrite transporter ND011_00770 PF13806 Rieske-like [2Fe-2S] domain ND011_00775 PF04324 BFD-like [2Fe-2S] binding domain ND011_00775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND011_00775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND011_00775 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND011_00775 PF18267 Rubredoxin NAD+ reductase C-terminal domain ND011_00780 PF07969 Amidohydrolase family ND011_00785 PF07690 Major Facilitator Superfamily ND011_00800 PF00356 Bacterial regulatory proteins, lacI family ND011_00805 PF02056 Family 4 glycosyl hydrolase ND011_00805 PF11975 Family 4 glycosyl hydrolase C-terminal domain ND011_00810 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND011_00815 PF00117 Glutamine amidotransferase class-I ND011_00820 PF00202 Aminotransferase class-III ND011_00825 PF12805 FUSC-like inner membrane protein yccS ND011_00830 PF13545 Crp-like helix-turn-helix domain ND011_00830 PF00027 Cyclic nucleotide-binding domain ND011_00835 PF02566 OsmC-like protein ND011_00855 PF00156 Phosphoribosyl transferase domain ND011_00860 PF00291 Pyridoxal-phosphate dependent enzyme ND011_00865 PF00485 Phosphoribulokinase / Uridine kinase family ND011_00870 PF06794 Uncharacterised protein family (UPF0270) ND011_00875 PF00561 alpha/beta hydrolase fold ND011_00880 PF01810 LysE type translocator ND011_00885 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND011_00890 PF00535 Glycosyl transferase family 2 ND011_00895 PF12848 ABC transporter ND011_00895 PF00005 ABC transporter ND011_00900 PF02525 Flavodoxin-like fold ND011_00905 PF00999 Sodium/hydrogen exchanger family ND011_00905 PF02254 TrkA-N domain ND011_00910 PF09526 Probable metal-binding protein (DUF2387) ND011_00915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND011_00920 PF04102 SlyX ND011_00925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND011_00925 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND011_00930 PF13309 HTH domain ND011_00930 PF08348 YheO-like PAS domain ND011_00935 PF02635 DsrE/DsrF-like family ND011_00940 PF02635 DsrE/DsrF-like family ND011_00945 PF04077 DsrH like protein ND011_00950 PF00164 Ribosomal protein S12/S23 ND011_00955 PF00177 Ribosomal protein S7p/S5e ND011_00960 PF00679 Elongation factor G C-terminus ND011_00960 PF14492 Elongation Factor G, domain II ND011_00960 PF03764 Elongation factor G, domain IV ND011_00960 PF00009 Elongation factor Tu GTP binding domain ND011_00960 PF03144 Elongation factor Tu domain 2 ND011_00965 PF00009 Elongation factor Tu GTP binding domain ND011_00965 PF03144 Elongation factor Tu domain 2 ND011_00965 PF03143 Elongation factor Tu C-terminal domain ND011_00970 PF04324 BFD-like [2Fe-2S] binding domain ND011_00975 PF00210 Ferritin-like domain ND011_00980 PF00338 Ribosomal protein S10p/S20e ND011_00985 PF00297 Ribosomal protein L3 ND011_00990 PF00573 Ribosomal protein L4/L1 family ND011_00995 PF00276 Ribosomal protein L23 ND011_01000 PF00181 Ribosomal Proteins L2, RNA binding domain ND011_01000 PF03947 Ribosomal Proteins L2, C-terminal domain ND011_01005 PF00203 Ribosomal protein S19 ND011_01010 PF00237 Ribosomal protein L22p/L17e ND011_01015 PF07650 KH domain ND011_01015 PF00189 Ribosomal protein S3, C-terminal domain ND011_01020 PF00252 Ribosomal protein L16p/L10e ND011_01025 PF00831 Ribosomal L29 protein ND011_01030 PF00366 Ribosomal protein S17 ND011_01035 PF00238 Ribosomal protein L14p/L23e ND011_01040 PF00467 KOW motif ND011_01040 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ND011_01045 PF00281 Ribosomal protein L5 ND011_01045 PF00673 ribosomal L5P family C-terminus ND011_01050 PF00253 Ribosomal protein S14p/S29e ND011_01055 PF00410 Ribosomal protein S8 ND011_01060 PF00347 Ribosomal protein L6 ND011_01065 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ND011_01070 PF00333 Ribosomal protein S5, N-terminal domain ND011_01070 PF03719 Ribosomal protein S5, C-terminal domain ND011_01075 PF00327 Ribosomal protein L30p/L7e ND011_01080 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ND011_01085 PF00344 SecY translocase ND011_01090 PF00444 Ribosomal protein L36 ND011_01095 PF00416 Ribosomal protein S13/S18 ND011_01100 PF00411 Ribosomal protein S11 ND011_01105 PF00163 Ribosomal protein S4/S9 N-terminal domain ND011_01105 PF01479 S4 domain ND011_01110 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ND011_01110 PF01000 RNA polymerase Rpb3/RpoA insert domain ND011_01110 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ND011_01115 PF01196 Ribosomal protein L17 ND011_01120 PF13411 MerR HTH family regulatory protein ND011_01125 PF03889 Alternative ribosome-rescue factor A ND011_01130 PF01741 Large-conductance mechanosensitive channel, MscL ND011_01135 PF02080 TrkA-C domain ND011_01135 PF02254 TrkA-N domain ND011_01140 PF01189 16S rRNA methyltransferase RsmB/F ND011_01140 PF01029 NusB family ND011_01145 PF02911 Formyl transferase, C-terminal domain ND011_01145 PF00551 Formyl transferase ND011_01150 PF01327 Polypeptide deformylase ND011_01155 PF02481 DNA recombination-mediator protein A ND011_01155 PF17782 DprA winged helix domain ND011_01160 PF04361 Protein of unknown function (DUF494) ND011_01165 PF01396 Topoisomerase DNA binding C4 zinc finger ND011_01170 PF01300 Telomere recombination ND011_01175 PF01488 Shikimate / quinate 5-dehydrogenase ND011_01175 PF08501 Shikimate dehydrogenase substrate binding domain ND011_01175 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ND011_01180 PF00132 Bacterial transferase hexapeptide (six repeats) ND011_01210 PF00474 Sodium:solute symporter family ND011_01215 PF04341 Protein of unknown function, DUF485 ND011_01220 PF16177 Acetyl-coenzyme A synthetase N-terminus ND011_01220 PF00501 AMP-binding enzyme ND011_01220 PF13193 AMP-binding enzyme C-terminal domain ND011_01225 PF00375 Sodium:dicarboxylate symporter family ND011_01235 PF04143 Sulphur transport ND011_01240 PF01206 Sulfurtransferase TusA ND011_01245 PF02719 Polysaccharide biosynthesis protein ND011_01250 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND011_01255 PF02350 UDP-N-acetylglucosamine 2-epimerase ND011_01260 PF03102 NeuB family ND011_01260 PF08666 SAF domain ND011_01270 PF00483 Nucleotidyl transferase ND011_01280 PF02348 Cytidylyltransferase ND011_01280 PF13472 GDSL-like Lipase/Acylhydrolase family ND011_01305 PF02540 NAD synthase ND011_01305 PF00795 Carbon-nitrogen hydrolase ND011_01310 PF00117 Glutamine amidotransferase class-I ND011_01315 PF00977 Histidine biosynthesis protein ND011_01320 PF08485 Polysaccharide biosynthesis protein C-terminal ND011_01320 PF02719 Polysaccharide biosynthesis protein ND011_01325 PF01370 NAD dependent epimerase/dehydratase family ND011_01330 PF02350 UDP-N-acetylglucosamine 2-epimerase ND011_01355 PF11412 Disulphide bond corrector protein DsbC ND011_01355 PF02683 Cytochrome C biogenesis protein transmembrane region ND011_01360 PF03091 CutA1 divalent ion tolerance protein ND011_01365 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND011_01370 PF00206 Lyase ND011_01370 PF10415 Fumarase C C-terminus ND011_01375 PF04186 FxsA cytoplasmic membrane protein ND011_01380 PF00166 Chaperonin 10 Kd subunit ND011_01385 PF00118 TCP-1/cpn60 chaperonin family ND011_01390 PF13698 Domain of unknown function (DUF4156) ND011_01395 PF04055 Radical SAM superfamily ND011_01400 PF09285 Elongation factor P, C-terminal ND011_01400 PF08207 Elongation factor P (EF-P) KOW-like domain ND011_01400 PF01132 Elongation factor P (EF-P) OB domain ND011_01405 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND011_01405 PF18416 N-acetylglucosamine binding protein domain 2 ND011_01410 PF00196 Bacterial regulatory proteins, luxR family ND011_01420 PF02753 Pili assembly chaperone PapD, C-terminal domain ND011_01420 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND011_01425 PF00577 Outer membrane usher protein ND011_01425 PF13953 PapC C-terminal domain ND011_01425 PF13954 PapC N-terminal domain ND011_01430 PF00419 Fimbrial protein ND011_01435 PF00893 Small Multidrug Resistance protein ND011_01440 PF08212 Lipocalin-like domain ND011_01445 PF02313 Fumarate reductase subunit D ND011_01450 PF02300 Fumarate reductase subunit C ND011_01455 PF13085 2Fe-2S iron-sulfur cluster binding domain ND011_01455 PF13183 4Fe-4S dicluster domain ND011_01460 PF02910 Fumarate reductase flavoprotein C-term ND011_01460 PF00890 FAD binding domain ND011_01465 PF00152 tRNA synthetases class II (D, K and N) ND011_01470 PF00924 Mechanosensitive ion channel ND011_01470 PF12795 Mechanosensitive ion channel porin domain ND011_01470 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND011_01475 PF02666 Phosphatidylserine decarboxylase ND011_01480 PF03193 RsgA GTPase ND011_01485 PF00929 Exonuclease ND011_01505 PF08331 Domain of unknown function (DUF1730) ND011_01510 PF03853 YjeF-related protein N-terminus ND011_01510 PF01256 Carbohydrate kinase ND011_01515 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ND011_01520 PF01520 N-acetylmuramoyl-L-alanine amidase ND011_01525 PF01119 DNA mismatch repair protein, C-terminal domain ND011_01525 PF08676 MutL C terminal dimerisation domain ND011_01535 PF17209 Hfq protein ND011_01540 PF16360 GTP-binding GTPase Middle Region ND011_01540 PF13167 GTP-binding GTPase N-terminal ND011_01540 PF01926 50S ribosome-binding GTPase ND011_01545 PF01145 SPFH domain / Band 7 family ND011_01545 PF12221 Bacterial membrane protein N terminal ND011_01550 PF01145 SPFH domain / Band 7 family ND011_01555 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ND011_01560 PF00709 Adenylosuccinate synthetase ND011_01565 PF02082 Transcriptional regulator ND011_01570 PF17876 Cold shock domain ND011_01570 PF08461 Ribonuclease R winged-helix domain ND011_01570 PF00773 RNB domain ND011_01570 PF08206 Ribonuclease B OB domain ND011_01570 PF00575 S1 RNA binding domain ND011_01575 PF00588 SpoU rRNA Methylase family ND011_01575 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND011_01595 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND011_01600 PF13953 PapC C-terminal domain ND011_01600 PF13954 PapC N-terminal domain ND011_01600 PF00577 Outer membrane usher protein ND011_01620 PF00326 Prolyl oligopeptidase family ND011_01630 PF01250 Ribosomal protein S6 ND011_01635 PF00436 Single-strand binding protein family ND011_01640 PF01084 Ribosomal protein S18 ND011_01645 PF03948 Ribosomal protein L9, C-terminal domain ND011_01645 PF01281 Ribosomal protein L9, N-terminal domain ND011_01650 PF04225 Opacity-associated protein A LysM-like domain ND011_01650 PF08525 Opacity-associated protein A N-terminal motif ND011_01655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND011_01655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND011_01660 PF04405 Domain of Unknown function (DUF542) ND011_01660 PF01814 Hemerythrin HHE cation binding domain ND011_01665 PF02872 5'-nucleotidase, C-terminal domain ND011_01665 PF00149 Calcineurin-like phosphoesterase ND011_01670 PF00459 Inositol monophosphatase family ND011_01675 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ND011_01680 PF06526 Protein of unknown function (DUF1107) ND011_01685 PF00571 CBS domain ND011_01685 PF03471 Transporter associated domain ND011_01685 PF01595 Cyclin M transmembrane N-terminal domain ND011_01690 PF01625 Peptide methionine sulfoxide reductase ND011_01695 PF01103 Surface antigen ND011_01695 PF17243 POTRA domain TamA domain 1 ND011_01695 PF07244 Surface antigen variable number repeat ND011_01700 PF04357 TamB, inner membrane protein subunit of TAM complex ND011_01705 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ND011_01710 PF00719 Inorganic pyrophosphatase ND011_01715 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ND011_01720 PF02875 Mur ligase family, glutamate ligase domain ND011_01720 PF08245 Mur ligase middle domain ND011_01720 PF01225 Mur ligase family, catalytic domain ND011_01725 PF01316 Arginine repressor, DNA binding domain ND011_01725 PF02863 Arginine repressor, C-terminal domain ND011_01730 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ND011_01730 PF00056 lactate/malate dehydrogenase, NAD binding domain ND011_01735 PF13693 Winged helix-turn-helix DNA-binding ND011_01750 PF00348 Polyprenyl synthetase ND011_01755 PF00829 Ribosomal prokaryotic L21 protein ND011_01760 PF01016 Ribosomal L27 protein ND011_01765 PF00892 EamA-like transporter family ND011_01770 PF01926 50S ribosome-binding GTPase ND011_01770 PF01018 GTP1/OBG ND011_01775 PF00672 HAMP domain ND011_01775 PF00512 His Kinase A (phospho-acceptor) domain ND011_01775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_01780 PF00072 Response regulator receiver domain ND011_01780 PF00486 Transcriptional regulatory protein, C terminal ND011_01785 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ND011_01790 PF01272 Transcription elongation factor, GreA/GreB, C-term ND011_01790 PF03449 Transcription elongation factor, N-terminal ND011_01795 PF01985 CRS1 / YhbY (CRM) domain ND011_01800 PF01728 FtsJ-like methyltransferase ND011_01805 PF00004 ATPase family associated with various cellular activities (AAA) ND011_01805 PF17862 AAA+ lid domain ND011_01805 PF06480 FtsH Extracellular ND011_01805 PF01434 Peptidase family M41 ND011_01810 PF00809 Pterin binding enzyme ND011_01815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND011_01815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND011_01815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND011_01815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND011_01820 PF03840 Preprotein translocase SecG subunit ND011_01835 PF02576 RimP N-terminal domain ND011_01835 PF17384 RimP C-terminal SH3 domain ND011_01840 PF13184 NusA-like KH domain ND011_01840 PF08529 NusA N-terminal domain ND011_01840 PF00575 S1 RNA binding domain ND011_01845 PF00009 Elongation factor Tu GTP binding domain ND011_01845 PF03144 Elongation factor Tu domain 2 ND011_01845 PF11987 Translation-initiation factor 2 ND011_01845 PF08364 Bacterial translation initiation factor IF-2 associated region ND011_01845 PF04760 Translation initiation factor IF-2, N-terminal region ND011_01850 PF02033 Ribosome-binding factor A ND011_01855 PF09157 Pseudouridine synthase II TruB, C-terminal ND011_01855 PF16198 tRNA pseudouridylate synthase B C-terminal domain ND011_01855 PF01509 TruB family pseudouridylate synthase (N terminal domain) ND011_01860 PF00312 Ribosomal protein S15 ND011_01865 PF01138 3' exoribonuclease family, domain 1 ND011_01865 PF00013 KH domain ND011_01865 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ND011_01865 PF03725 3' exoribonuclease family, domain 2 ND011_01865 PF00575 S1 RNA binding domain ND011_01870 PF07719 Tetratricopeptide repeat ND011_01870 PF13181 Tetratricopeptide repeat ND011_01875 PF03880 DbpA RNA binding domain ND011_01875 PF00270 DEAD/DEAH box helicase ND011_01875 PF12343 Cold shock protein DEAD box A ND011_01875 PF00271 Helicase conserved C-terminal domain ND011_01880 PF00296 Luciferase-like monooxygenase ND011_01890 PF03313 Serine dehydratase alpha chain ND011_01895 PF01136 Peptidase family U32 ND011_01900 PF01136 Peptidase family U32 ND011_01905 PF02036 SCP-2 sterol transfer family ND011_01910 PF13508 Acetyltransferase (GNAT) domain ND011_01915 PF01541 GIY-YIG catalytic domain ND011_01920 PF13520 Amino acid permease ND011_01925 PF01276 Orn/Lys/Arg decarboxylase, major domain ND011_01925 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND011_01925 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND011_01930 PF10940 Protein of unknown function (DUF2618) ND011_01940 PF13460 NAD(P)H-binding ND011_01945 PF12706 Beta-lactamase superfamily domain ND011_01955 PF07969 Amidohydrolase family ND011_01960 PF00005 ABC transporter ND011_01965 PF00005 ABC transporter ND011_01970 PF06007 Phosphonate metabolism protein PhnJ ND011_01975 PF05861 Bacterial phosphonate metabolism protein (PhnI) ND011_01980 PF05845 Bacterial phosphonate metabolism protein (PhnH) ND011_01985 PF06754 Phosphonate metabolism protein PhnG ND011_01995 PF13597 Anaerobic ribonucleoside-triphosphate reductase ND011_01995 PF03477 ATP cone domain ND011_02000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND011_02000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND011_02005 PF06877 Regulator of ribonuclease activity B ND011_02010 PF00583 Acetyltransferase (GNAT) family ND011_02015 PF08264 Anticodon-binding domain of tRNA ND011_02015 PF00133 tRNA synthetases class I (I, L, M and V) ND011_02015 PF10458 Valyl tRNA synthetase tRNA binding arm ND011_02020 PF04364 DNA polymerase III chi subunit, HolC ND011_02025 PF00883 Cytosol aminopeptidase family, catalytic domain ND011_02025 PF02789 Cytosol aminopeptidase family, N-terminal domain ND011_02030 PF03739 Lipopolysaccharide export system permease LptF/LptG ND011_02035 PF03739 Lipopolysaccharide export system permease LptF/LptG ND011_02075 PF04221 RelB antitoxin ND011_02080 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ND011_02125 PF00892 EamA-like transporter family ND011_02170 PF01344 Kelch motif ND011_02175 PF06178 Oligogalacturonate-specific porin protein (KdgM) ND011_02180 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND011_02180 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain ND011_02180 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND011_02195 PF09092 Lyase, N terminal ND011_02195 PF09093 Lyase, catalytic ND011_02195 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND011_02195 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND011_02200 PF00884 Sulfatase ND011_02205 PF08220 DeoR-like helix-turn-helix domain ND011_02205 PF00455 DeoR C terminal sensor domain ND011_02210 PF08013 Tagatose 6 phosphate kinase ND011_02215 PF01380 SIS domain ND011_02220 PF03830 PTS system sorbose subfamily IIB component ND011_02225 PF03609 PTS system sorbose-specific iic component ND011_02230 PF03613 PTS system mannose/fructose/sorbose family IID component ND011_02240 PF01979 Amidohydrolase family ND011_02245 PF04962 KduI/IolB family ND011_02255 PF07470 Glycosyl Hydrolase Family 88 ND011_02260 PF04055 Radical SAM superfamily ND011_02260 PF13186 Iron-sulfur cluster-binding domain ND011_02265 PF00884 Sulfatase ND011_02275 PF01116 Fructose-bisphosphate aldolase class-II ND011_02285 PF10696 Protein of unknown function (DUF2501) ND011_02290 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND011_02305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND011_02310 PF00873 AcrB/AcrD/AcrF family ND011_02315 PF00465 Iron-containing alcohol dehydrogenase ND011_02320 PF02733 Dak1 domain ND011_02325 PF02734 DAK2 domain ND011_02330 PF00381 PTS HPr component phosphorylation site ND011_02330 PF03610 PTS system fructose IIA component ND011_02330 PF00391 PEP-utilising enzyme, mobile domain ND011_02330 PF05524 PEP-utilising enzyme, N-terminal ND011_02335 PF02954 Bacterial regulatory protein, Fis family ND011_02335 PF00989 PAS fold ND011_02335 PF00158 Sigma-54 interaction domain ND011_02340 PF00990 Diguanylate cyclase, GGDEF domain ND011_02345 PF07256 Protein of unknown function (DUF1435) ND011_02365 PF05175 Methyltransferase small domain ND011_02365 PF08468 Methyltransferase small domain N-terminal ND011_02370 PF03603 DNA polymerase III psi subunit ND011_02375 PF00583 Acetyltransferase (GNAT) family ND011_02380 PF00009 Elongation factor Tu GTP binding domain ND011_02380 PF03144 Elongation factor Tu domain 2 ND011_02380 PF16658 Class II release factor RF3, C-terminal domain ND011_02385 PF04972 BON domain ND011_02390 PF07043 Protein of unknown function (DUF1328) ND011_02395 PF01734 Patatin-like phospholipase ND011_02400 PF01026 TatD related DNase ND011_02405 PF07670 Nucleoside recognition ND011_02405 PF07662 Na+ dependent nucleoside transporter C-terminus ND011_02405 PF01773 Na+ dependent nucleoside transporter N-terminus ND011_02410 PF01791 DeoC/LacD family aldolase ND011_02415 PF02885 Glycosyl transferase family, helical bundle domain ND011_02415 PF00591 Glycosyl transferase family, a/b domain ND011_02415 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ND011_02420 PF01676 Metalloenzyme superfamily ND011_02425 PF01048 Phosphorylase superfamily ND011_02430 PF10144 Bacterial virulence factor haemolysin ND011_02435 PF18429 Domain of unknown function (DUF5609) ND011_02440 PF18073 Rubredoxin metal binding domain ND011_02445 PF13521 AAA domain ND011_02445 PF01381 Helix-turn-helix ND011_02450 PF12848 ABC transporter ND011_02450 PF00005 ABC transporter ND011_02465 PF00689 Cation transporting ATPase, C-terminus ND011_02465 PF00690 Cation transporter/ATPase, N-terminus ND011_02475 PF14718 Soluble lytic murein transglycosylase L domain ND011_02475 PF01464 Transglycosylase SLT domain ND011_02480 PF01371 Trp repressor protein ND011_02485 PF01931 Protein of unknown function DUF84 ND011_02490 PF00300 Histidine phosphatase superfamily (branch 1) ND011_02495 PF06445 GyrI-like small molecule binding domain ND011_02495 PF12833 Helix-turn-helix domain ND011_02500 PF05981 CreA protein ND011_02505 PF00072 Response regulator receiver domain ND011_02505 PF00486 Transcriptional regulatory protein, C terminal ND011_02515 PF08254 Threonine leader peptide ND011_02520 PF03447 Homoserine dehydrogenase, NAD binding domain ND011_02520 PF01842 ACT domain ND011_02520 PF13840 ACT domain ND011_02520 PF00696 Amino acid kinase family ND011_02520 PF00742 Homoserine dehydrogenase ND011_02525 PF08544 GHMP kinases C terminal ND011_02525 PF00288 GHMP kinases N terminal domain ND011_02530 PF00291 Pyridoxal-phosphate dependent enzyme ND011_02530 PF14821 Threonine synthase N terminus ND011_02535 PF03883 Peroxide stress protein YaaA ND011_02540 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND011_02545 PF00994 Probable molybdopterin binding domain ND011_02550 PF07690 Major Facilitator Superfamily ND011_02560 PF01184 GPR1/FUN34/yaaH family ND011_02565 PF00012 Hsp70 protein ND011_02570 PF01556 DnaJ C terminal domain ND011_02570 PF00684 DnaJ central domain ND011_02570 PF00226 DnaJ domain ND011_02575 PF06965 Na+/H+ antiporter 1 ND011_02580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_02580 PF03466 LysR substrate binding domain ND011_02585 PF01649 Ribosomal protein S20 ND011_02590 PF06574 FAD synthetase ND011_02590 PF01687 Riboflavin kinase ND011_02595 PF08264 Anticodon-binding domain of tRNA ND011_02595 PF06827 Zinc finger found in FPG and IleRS ND011_02595 PF00133 tRNA synthetases class I (I, L, M and V) ND011_02600 PF01252 Signal peptidase (SPase) II ND011_02605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND011_02610 PF02401 LytB protein ND011_02615 PF05173 Dihydrodipicolinate reductase, C-terminus ND011_02615 PF01113 Dihydrodipicolinate reductase, N-terminus ND011_02620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ND011_02620 PF00117 Glutamine amidotransferase class-I ND011_02625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND011_02625 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ND011_02625 PF02142 MGS-like domain ND011_02630 PF01810 LysE type translocator ND011_02635 PF06738 Putative threonine/serine exporter ND011_02640 PF12821 Threonine/Serine exporter, ThrE ND011_02645 PF00186 Dihydrofolate reductase ND011_02655 PF00149 Calcineurin-like phosphoesterase ND011_02660 PF04379 ApaG domain ND011_02665 PF00398 Ribosomal RNA adenine dimethylase ND011_02670 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ND011_02675 PF00639 PPIC-type PPIASE domain ND011_02675 PF09312 SurA N-terminal domain ND011_02680 PF04453 LPS transport system D ND011_02680 PF03968 OstA-like protein ND011_02685 PF00226 DnaJ domain ND011_02685 PF05099 Tellurite resistance protein TerB ND011_02690 PF00849 RNA pseudouridylate synthase ND011_02695 PF18337 RapA N-terminal Tudor like domain ND011_02695 PF18339 RapA N-terminal Tudor like domain 1 ND011_02695 PF12137 RNA polymerase recycling family C-terminal ND011_02695 PF00271 Helicase conserved C-terminal domain ND011_02695 PF00176 SNF2 family N-terminal domain ND011_02700 PF00136 DNA polymerase family B ND011_02700 PF03104 DNA polymerase family B, exonuclease domain ND011_02705 PF09335 SNARE associated Golgi protein ND011_02710 PF00005 ABC transporter ND011_02715 PF00528 Binding-protein-dependent transport system inner membrane component ND011_02725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND011_02725 PF12793 Sugar transport-related sRNA regulator N-term ND011_02735 PF07690 Major Facilitator Superfamily ND011_02740 PF00694 Aconitase C-terminal domain ND011_02745 PF00330 Aconitase family (aconitate hydratase) ND011_02750 PF00180 Isocitrate/isopropylmalate dehydrogenase ND011_02755 PF00682 HMGL-like ND011_02755 PF08502 LeuA allosteric (dimerisation) domain ND011_02760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_02760 PF03466 LysR substrate binding domain ND011_02765 PF00501 AMP-binding enzyme ND011_02770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND011_02770 PF00205 Thiamine pyrophosphate enzyme, central domain ND011_02770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND011_02775 PF10369 Small subunit of acetolactate synthase ND011_02780 PF00356 Bacterial regulatory proteins, lacI family ND011_02780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND011_02785 PF06610 L-alanine exporter ND011_02790 PF02381 MraZ protein, putative antitoxin-like ND011_02795 PF01795 MraW methylase family ND011_02800 PF04999 Cell division protein FtsL ND011_02805 PF03717 Penicillin-binding Protein dimerisation domain ND011_02805 PF00905 Penicillin binding protein transpeptidase domain ND011_02810 PF01225 Mur ligase family, catalytic domain ND011_02810 PF08245 Mur ligase middle domain ND011_02810 PF02875 Mur ligase family, glutamate ligase domain ND011_02815 PF02875 Mur ligase family, glutamate ligase domain ND011_02815 PF08245 Mur ligase middle domain ND011_02815 PF01225 Mur ligase family, catalytic domain ND011_02820 PF00953 Glycosyl transferase family 4 ND011_02820 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ND011_02825 PF08245 Mur ligase middle domain ND011_02825 PF02875 Mur ligase family, glutamate ligase domain ND011_02830 PF01098 Cell cycle protein ND011_02835 PF04101 Glycosyltransferase family 28 C-terminal domain ND011_02835 PF03033 Glycosyltransferase family 28 N-terminal domain ND011_02840 PF01225 Mur ligase family, catalytic domain ND011_02840 PF02875 Mur ligase family, glutamate ligase domain ND011_02840 PF08245 Mur ligase middle domain ND011_02845 PF01820 D-ala D-ala ligase N-terminus ND011_02845 PF07478 D-ala D-ala ligase C-terminus ND011_02850 PF08478 POTRA domain, FtsQ-type ND011_02850 PF03799 Cell division protein FtsQ ND011_02855 PF02491 SHS2 domain inserted in FTSA ND011_02860 PF12327 FtsZ family, C-terminal domain ND011_02860 PF00091 Tubulin/FtsZ family, GTPase domain ND011_02865 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ND011_02875 PF06558 Secretion monitor precursor protein (SecM) ND011_02880 PF07516 SecA Wing and Scaffold domain ND011_02880 PF02810 SEC-C motif ND011_02880 PF07517 SecA DEAD-like domain ND011_02880 PF01043 SecA preprotein cross-linking domain ND011_02885 PF00293 NUDIX domain ND011_02890 PF03884 DNA gyrase inhibitor YacG ND011_02895 PF07072 Cell division protein ND011_02900 PF01121 Dephospho-CoA kinase ND011_02905 PF00478 IMP dehydrogenase / GMP reductase domain ND011_02910 PF00482 Type II secretion system (T2SS), protein F ND011_02915 PF00437 Type II/IV secretion system protein ND011_02915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ND011_02920 PF07963 Prokaryotic N-terminal methylation motif ND011_02925 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ND011_02925 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ND011_02930 PF01510 N-acetylmuramoyl-L-alanine amidase ND011_02935 PF17113 Regulatory signalling modulator protein AmpE ND011_02940 PF00324 Amino acid permease ND011_02945 PF00392 Bacterial regulatory proteins, gntR family ND011_02945 PF07729 FCD domain ND011_02950 PF00456 Transketolase, thiamine diphosphate binding domain ND011_02950 PF17831 Pyruvate dehydrogenase E1 component middle domain ND011_02955 PF02817 e3 binding domain ND011_02955 PF00364 Biotin-requiring enzyme ND011_02955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND011_02960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND011_02960 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND011_02970 PF11791 Aconitate B N-terminal domain ND011_02970 PF06434 Aconitate hydratase 2 N-terminus ND011_02970 PF00330 Aconitase family (aconitate hydratase) ND011_02975 PF06062 Uncharacterised protein family (UPF0231) ND011_02980 PF00892 EamA-like transporter family ND011_02985 PF02675 S-adenosylmethionine decarboxylase ND011_02990 PF17284 Spermidine synthase tetramerisation domain ND011_02995 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND011_03000 PF07732 Multicopper oxidase ND011_03000 PF07731 Multicopper oxidase ND011_03000 PF00394 Multicopper oxidase ND011_03000 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND011_03005 PF00156 Phosphoribosyl transferase domain ND011_03010 PF00484 Carbonic anhydrase ND011_03015 PF00005 ABC transporter ND011_03020 PF01061 ABC-2 type transporter ND011_03025 PF01522 Polysaccharide deacetylase ND011_03030 PF02261 Aspartate decarboxylase ND011_03035 PF02569 Pantoate-beta-alanine ligase ND011_03040 PF02548 Ketopantoate hydroxymethyltransferase ND011_03045 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ND011_03050 PF01743 Poly A polymerase head domain ND011_03050 PF12627 Probable RNA and SrmB- binding site of polymerase A ND011_03050 PF12626 Polymerase A arginine-rich C-terminus ND011_03055 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND011_03060 PF01258 Prokaryotic dksA/traR C4-type zinc finger ND011_03065 PF03749 Sugar fermentation stimulation protein RE domain ND011_03065 PF17746 SfsA N-terminal OB domain ND011_03070 PF02834 LigT like Phosphoesterase ND011_03075 PF00270 DEAD/DEAH box helicase ND011_03075 PF00271 Helicase conserved C-terminal domain ND011_03075 PF08482 ATP-dependent helicase C-terminal ND011_03075 PF04408 Helicase associated domain (HA2) ND011_03080 PF14814 Bifunctional transglycosylase second domain ND011_03080 PF00905 Penicillin binding protein transpeptidase domain ND011_03080 PF00912 Transglycosylase ND011_03080 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ND011_03085 PF00202 Aminotransferase class-III ND011_03090 PF00654 Voltage gated chloride channel ND011_03095 PF01521 Iron-sulphur cluster biosynthesis ND011_03100 PF03458 UPF0126 domain ND011_03105 PF01497 Periplasmic binding protein ND011_03110 PF01048 Phosphorylase superfamily ND011_03115 PF01966 HD domain ND011_03115 PF13286 Phosphohydrolase-associated domain ND011_03120 PF00595 PDZ domain ND011_03125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND011_03125 PF00672 HAMP domain ND011_03125 PF01627 Hpt domain ND011_03125 PF00512 His Kinase A (phospho-acceptor) domain ND011_03125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_03125 PF00072 Response regulator receiver domain ND011_03130 PF05958 tRNA (Uracil-5-)-methyltransferase ND011_03130 PF01938 TRAM domain ND011_03135 PF13291 ACT domain ND011_03135 PF02824 TGS domain ND011_03135 PF04607 Region found in RelA / SpoT proteins ND011_03140 PF03819 MazG nucleotide pyrophosphohydrolase domain ND011_03145 PF06418 CTP synthase N-terminus ND011_03145 PF00117 Glutamine amidotransferase class-I ND011_03150 PF00113 Enolase, C-terminal TIM barrel domain ND011_03150 PF03952 Enolase, N-terminal domain ND011_03155 PF04055 Radical SAM superfamily ND011_03160 PF01242 6-pyruvoyl tetrahydropterin synthase ND011_03165 PF00175 Oxidoreductase NAD-binding domain ND011_03165 PF00667 FAD binding domain ND011_03165 PF00258 Flavodoxin ND011_03170 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND011_03170 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND011_03175 PF01507 Phosphoadenosine phosphosulfate reductase family ND011_03190 PF04389 Peptidase family M28 ND011_03195 PF10414 Sirohaem synthase dimerisation region ND011_03195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND011_03195 PF14824 Sirohaem biosynthesis protein central ND011_03200 PF01507 Phosphoadenosine phosphosulfate reductase family ND011_03205 PF00009 Elongation factor Tu GTP binding domain ND011_03215 PF12084 Protein of unknown function (DUF3561) ND011_03220 PF04977 Septum formation initiator ND011_03225 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ND011_03230 PF02542 YgbB family ND011_03235 PF01142 tRNA pseudouridine synthase D (TruD) ND011_03240 PF01975 Survival protein SurE ND011_03250 PF01476 LysM domain ND011_03250 PF01551 Peptidase family M23 ND011_03255 PF04545 Sigma-70, region 4 ND011_03255 PF04542 Sigma-70 region 2 ND011_03255 PF00140 Sigma-70 factor, region 1.2 ND011_03255 PF04539 Sigma-70 region 3 ND011_03260 PF01624 MutS domain I ND011_03260 PF05188 MutS domain II ND011_03260 PF05192 MutS domain III ND011_03260 PF05190 MutS family domain IV ND011_03260 PF00488 MutS domain V ND011_03295 PF13193 AMP-binding enzyme C-terminal domain ND011_03295 PF00668 Condensation domain ND011_03295 PF00501 AMP-binding enzyme ND011_03295 PF00550 Phosphopantetheine attachment site ND011_03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_03330 PF09308 LuxQ, periplasmic ND011_03330 PF00512 His Kinase A (phospho-acceptor) domain ND011_03330 PF00072 Response regulator receiver domain ND011_03335 PF00072 Response regulator receiver domain ND011_03335 PF00196 Bacterial regulatory proteins, luxR family ND011_03350 PF01464 Transglycosylase SLT domain ND011_03370 PF01514 Secretory protein of YscJ/FliF family ND011_03390 PF12833 Helix-turn-helix domain ND011_03395 PF03958 Bacterial type II/III secretion system short domain ND011_03395 PF00263 Bacterial type II and III secretion system protein ND011_03400 PF07201 HrpJ-like domain ND011_03405 PF00771 FHIPEP family ND011_03415 PF18269 T3SS EscN ATPase C-terminal domain ND011_03415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND011_03415 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND011_03430 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND011_03435 PF00813 FliP family ND011_03440 PF01313 Bacterial export proteins, family 3 ND011_03445 PF01311 Bacterial export proteins, family 1 ND011_03450 PF01312 FlhB HrpN YscU SpaS Family ND011_03455 PF07720 Tetratricopeptide repeat ND011_03480 PF00550 Phosphopantetheine attachment site ND011_03500 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND011_03500 PF18416 N-acetylglucosamine binding protein domain 2 ND011_03505 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND011_03510 PF01478 Type IV leader peptidase family ND011_03510 PF06750 Bacterial Peptidase A24 N-terminal domain ND011_03520 PF05134 Type II secretion system (T2SS), protein L ND011_03520 PF12693 GspL periplasmic domain ND011_03525 PF03934 Type II secretion system (T2SS), protein K ND011_03530 PF07963 Prokaryotic N-terminal methylation motif ND011_03530 PF11612 Type II secretion system (T2SS), protein J ND011_03535 PF07963 Prokaryotic N-terminal methylation motif ND011_03535 PF02501 Type II secretion system (T2SS), protein I ND011_03545 PF07963 Prokaryotic N-terminal methylation motif ND011_03545 PF08334 Type II secretion system (T2SS), protein G ND011_03550 PF00482 Type II secretion system (T2SS), protein F ND011_03555 PF00437 Type II/IV secretion system protein ND011_03560 PF00263 Bacterial type II and III secretion system protein ND011_03560 PF03958 Bacterial type II/III secretion system short domain ND011_03565 PF11356 Type II secretion system protein C ND011_03590 PF05681 Fumarate hydratase (Fumerase) ND011_03590 PF05683 Fumarase C-terminus ND011_03595 PF07690 Major Facilitator Superfamily ND011_03600 PF02464 Competence-damaged protein ND011_03605 PF00154 recA bacterial DNA recombination protein ND011_03610 PF02631 RecX family ND011_03615 PF01411 tRNA synthetases class II (A) ND011_03615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND011_03615 PF02272 DHHA1 domain ND011_03620 PF02599 Global regulator protein family ND011_03650 PF01411 tRNA synthetases class II (A) ND011_03650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND011_03655 PF01411 tRNA synthetases class II (A) ND011_03655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND011_03660 PF13419 Haloacid dehalogenase-like hydrolase ND011_03665 PF09335 SNARE associated Golgi protein ND011_03670 PF04262 Glutamate-cysteine ligase ND011_03675 PF02664 S-Ribosylhomocysteinase (LuxS) ND011_03680 PF00571 CBS domain ND011_03680 PF03471 Transporter associated domain ND011_03680 PF01595 Cyclin M transmembrane N-terminal domain ND011_03685 PF01578 Cytochrome C assembly protein ND011_03690 PF00448 SRP54-type protein, GTPase domain ND011_03690 PF02881 SRP54-type protein, helical bundle domain ND011_03690 PF02978 Signal peptide binding domain ND011_03695 PF00886 Ribosomal protein S16 ND011_03700 PF01782 RimM N-terminal domain ND011_03700 PF05239 PRC-barrel domain ND011_03705 PF01746 tRNA (Guanine-1)-methyltransferase ND011_03710 PF01245 Ribosomal protein L19 ND011_03715 PF04338 Protein of unknown function, DUF481 ND011_03720 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND011_03725 PF00072 Response regulator receiver domain ND011_03725 PF04397 LytTr DNA-binding domain ND011_03730 PF00793 DAHP synthetase I family ND011_03735 PF01817 Chorismate mutase type II ND011_03735 PF02153 Prephenate dehydrogenase ND011_03740 PF00800 Prephenate dehydratase ND011_03740 PF01817 Chorismate mutase type II ND011_03750 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND011_03755 PF13525 Outer membrane lipoprotein ND011_03760 PF00849 RNA pseudouridylate synthase ND011_03760 PF01479 S4 domain ND011_03765 PF02578 Multi-copper polyphenol oxidoreductase laccase ND011_03770 PF00004 ATPase family associated with various cellular activities (AAA) ND011_03770 PF07724 AAA domain (Cdc48 subfamily) ND011_03770 PF17871 AAA lid domain ND011_03770 PF02861 Clp amino terminal domain, pathogenicity island component ND011_03770 PF10431 C-terminal, D2-small domain, of ClpB protein ND011_03805 PF03372 Endonuclease/Exonuclease/phosphatase family ND011_03810 PF01476 LysM domain ND011_03810 PF01464 Transglycosylase SLT domain ND011_03815 PF16123 Hydroxyacylglutathione hydrolase C-terminus ND011_03815 PF00753 Metallo-beta-lactamase superfamily ND011_03820 PF08241 Methyltransferase domain ND011_03825 PF00075 RNase H ND011_03830 PF00929 Exonuclease ND011_03840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND011_03840 PF09317 Domain of unknown function (DUF1974) ND011_03840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND011_03845 PF13580 SIS domain ND011_03850 PF13230 Glutamine amidotransferases class-II ND011_03855 PF03734 L,D-transpeptidase catalytic domain ND011_03860 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ND011_03860 PF11973 NQRA C-terminal domain ND011_03865 PF03116 NQR2, RnfD, RnfE family ND011_03870 PF04205 FMN-binding domain ND011_03875 PF02508 Rnf-Nqr subunit, membrane protein ND011_03880 PF02508 Rnf-Nqr subunit, membrane protein ND011_03885 PF00970 Oxidoreductase FAD-binding domain ND011_03885 PF00111 2Fe-2S iron-sulfur cluster binding domain ND011_03885 PF00175 Oxidoreductase NAD-binding domain ND011_03890 PF02424 ApbE family ND011_03895 PF04400 (Na+)-NQR maturation NqrM ND011_03900 PF03009 Glycerophosphoryl diester phosphodiesterase family ND011_03905 PF11798 IMS family HHH motif ND011_03905 PF00817 impB/mucB/samB family ND011_03905 PF11799 impB/mucB/samB family C-terminal domain ND011_03910 PF07687 Peptidase dimerisation domain ND011_03910 PF01546 Peptidase family M20/M25/M40 ND011_03915 PF00156 Phosphoribosyl transferase domain ND011_03920 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ND011_03925 PF07417 Sigma factor-binding transcriptional regulator Crl ND011_03930 PF00696 Amino acid kinase family ND011_03930 PF01472 PUA domain ND011_03935 PF00171 Aldehyde dehydrogenase family ND011_03940 PF07238 PilZ domain ND011_03940 PF07317 Flagellar regulator YcgR ND011_03965 PF00593 TonB dependent receptor ND011_03965 PF07715 TonB-dependent Receptor Plug Domain ND011_03970 PF01202 Shikimate kinase ND011_03990 PF07302 AroM protein ND011_03995 PF06865 Pyrimidine/purine nucleoside phosphorylase ND011_04000 PF04381 Putative exonuclease, RdgC ND011_04005 PF00480 ROK family ND011_04010 PF13476 AAA domain ND011_04015 PF12320 Type 5 capsule protein repressor C-terminal domain ND011_04015 PF00149 Calcineurin-like phosphoesterase ND011_04020 PF00072 Response regulator receiver domain ND011_04020 PF00486 Transcriptional regulatory protein, C terminal ND011_04025 PF11808 Phosphate regulon sensor protein PhoR ND011_04025 PF00512 His Kinase A (phospho-acceptor) domain ND011_04025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_04025 PF00989 PAS fold ND011_04030 PF12849 PBP superfamily domain ND011_04035 PF05525 Branched-chain amino acid transport protein ND011_04040 PF00324 Amino acid permease ND011_04045 PF00128 Alpha amylase, catalytic domain ND011_04045 PF02903 Alpha amylase, N-terminal ig-like domain ND011_04055 PF10417 C-terminal domain of 1-Cys peroxiredoxin ND011_04055 PF00578 AhpC/TSA family ND011_04060 PF04336 Acyl carrier protein phosphodiesterase ND011_04065 PF02547 Queuosine biosynthesis protein ND011_04070 PF01702 Queuine tRNA-ribosyltransferase ND011_04075 PF02699 Preprotein translocase subunit ND011_04080 PF07549 SecD/SecF GG Motif ND011_04080 PF13721 SecD export protein N-terminal TM region ND011_04080 PF02355 Protein export membrane protein ND011_04085 PF07549 SecD/SecF GG Motif ND011_04085 PF02355 Protein export membrane protein ND011_04090 PF03477 ATP cone domain ND011_04095 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND011_04095 PF01872 RibD C-terminal domain ND011_04100 PF00885 6,7-dimethyl-8-ribityllumazine synthase ND011_04105 PF01029 NusB family ND011_04110 PF00586 AIR synthase related protein, N-terminal domain ND011_04110 PF02769 AIR synthase related protein, C-terminal domain ND011_04115 PF04608 Phosphatidylglycerophosphatase A ND011_04120 PF02779 Transketolase, pyrimidine binding domain ND011_04120 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ND011_04120 PF02780 Transketolase, C-terminal domain ND011_04125 PF00348 Polyprenyl synthetase ND011_04130 PF02609 Exonuclease VII small subunit ND011_04135 PF02568 Thiamine biosynthesis protein (ThiI) ND011_04135 PF02926 THUMP domain ND011_04140 PF14532 Sigma-54 interaction domain ND011_04140 PF02954 Bacterial regulatory protein, Fis family ND011_04140 PF00072 Response regulator receiver domain ND011_04145 PF00672 HAMP domain ND011_04145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_04145 PF00512 His Kinase A (phospho-acceptor) domain ND011_04155 PF07690 Major Facilitator Superfamily ND011_04160 PF01965 DJ-1/PfpI family ND011_04165 PF02558 Ketopantoate reductase PanE/ApbA ND011_04165 PF08546 Ketopantoate reductase PanE/ApbA C terminal ND011_04170 PF04461 Protein of unknown function (DUF520) ND011_04175 PF07690 Major Facilitator Superfamily ND011_04180 PF01040 UbiA prenyltransferase family ND011_04185 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ND011_04190 PF00510 Cytochrome c oxidase subunit III ND011_04195 PF00115 Cytochrome C and Quinol oxidase polypeptide I ND011_04200 PF06481 COX Aromatic Rich Motif ND011_04200 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ND011_04205 PF03502 Nucleoside-specific channel-forming protein, Tsx ND011_04210 PF07690 Major Facilitator Superfamily ND011_04215 PF03923 Uncharacterized lipoprotein ND011_04215 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND011_04220 PF01722 BolA-like protein ND011_04225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND011_04225 PF05698 Bacterial trigger factor protein (TF) C-terminus ND011_04225 PF05697 Bacterial trigger factor protein (TF) ND011_04230 PF00574 Clp protease ND011_04235 PF10431 C-terminal, D2-small domain, of ClpB protein ND011_04235 PF06689 ClpX C4-type zinc finger ND011_04235 PF07724 AAA domain (Cdc48 subfamily) ND011_04240 PF00004 ATPase family associated with various cellular activities (AAA) ND011_04240 PF05362 Lon protease (S16) C-terminal proteolytic domain ND011_04240 PF02190 ATP-dependent protease La (LON) substrate-binding domain ND011_04245 PF00216 Bacterial DNA-binding protein ND011_04250 PF13145 PPIC-type PPIASE domain ND011_04265 PF06508 Queuosine biosynthesis protein QueC ND011_04270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND011_04270 PF12793 Sugar transport-related sRNA regulator N-term ND011_04285 PF01037 Lrp/AsnC ligand binding domain ND011_04285 PF13404 AsnC-type helix-turn-helix domain ND011_04290 PF00005 ABC transporter ND011_04290 PF00664 ABC transporter transmembrane region ND011_04295 PF00664 ABC transporter transmembrane region ND011_04295 PF00005 ABC transporter ND011_04300 PF00543 Nitrogen regulatory protein P-II ND011_04305 PF00909 Ammonium Transporter Family ND011_04315 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND011_04325 PF05321 Haemolysin expression modulating protein ND011_04330 PF10757 Biofilm formation regulator YbaJ ND011_04340 PF00444 Ribosomal protein L36 ND011_04345 PF01197 Ribosomal protein L31 ND011_04350 PF00873 AcrB/AcrD/AcrF family ND011_04355 PF00529 HlyD membrane-fusion protein of T1SS ND011_04355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND011_04360 PF08361 MAATS-type transcriptional repressor, C-terminal region ND011_04360 PF00440 Bacterial regulatory proteins, tetR family ND011_04365 PF02635 DsrE/DsrF-like family ND011_04370 PF00924 Mechanosensitive ion channel ND011_04370 PF12795 Mechanosensitive ion channel porin domain ND011_04370 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND011_04375 PF10689 Protein of unknown function (DUF2496) ND011_04385 PF04304 Protein of unknown function (DUF454) ND011_04390 PF00156 Phosphoribosyl transferase domain ND011_04395 PF01970 Tripartite tricarboxylate transporter TctA family ND011_04410 PF00072 Response regulator receiver domain ND011_04410 PF00486 Transcriptional regulatory protein, C terminal ND011_04415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_04415 PF00512 His Kinase A (phospho-acceptor) domain ND011_04420 PF12169 DNA polymerase III subunits gamma and tau domain III ND011_04420 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ND011_04420 PF12170 DNA polymerase III tau subunit V interacting with alpha ND011_04425 PF02575 YbaB/EbfC DNA-binding family ND011_04430 PF02132 RecR protein ND011_04430 PF13662 Toprim domain ND011_04435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_04435 PF00183 Hsp90 protein ND011_04440 PF05191 Adenylate kinase, active site lid ND011_04445 PF00762 Ferrochelatase ND011_04450 PF02706 Chain length determinant protein ND011_04455 PF00294 pfkB family carbohydrate kinase ND011_04460 PF02254 TrkA-N domain ND011_04460 PF00999 Sodium/hydrogen exchanger family ND011_04465 PF00149 Calcineurin-like phosphoesterase ND011_04465 PF02872 5'-nucleotidase, C-terminal domain ND011_04470 PF04073 Aminoacyl-tRNA editing domain ND011_04475 PF01963 TraB family ND011_04480 PF00403 Heavy-metal-associated domain ND011_04485 PF13411 MerR HTH family regulatory protein ND011_04490 PF01957 NfeD-like C-terminal, partner-binding ND011_04495 PF01145 SPFH domain / Band 7 family ND011_04495 PF16200 C-terminal region of band_7 ND011_04500 PF00085 Thioredoxin ND011_04505 PF00106 short chain dehydrogenase ND011_04510 PF13472 GDSL-like Lipase/Acylhydrolase family ND011_04515 PF00005 ABC transporter ND011_04525 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ND011_04525 PF02222 ATP-grasp domain ND011_04530 PF00731 AIR carboxylase ND011_04535 PF00149 Calcineurin-like phosphoesterase ND011_04540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND011_04545 PF09190 DALR domain ND011_04545 PF01406 tRNA synthetases class I (C) catalytic domain ND011_04560 PF00419 Fimbrial protein ND011_04565 PF13953 PapC C-terminal domain ND011_04565 PF13954 PapC N-terminal domain ND011_04565 PF00577 Outer membrane usher protein ND011_04570 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND011_04570 PF02753 Pili assembly chaperone PapD, C-terminal domain ND011_04605 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ND011_04605 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ND011_04615 PF01022 Bacterial regulatory protein, arsR family ND011_04620 PF02040 Arsenical pump membrane protein ND011_04625 PF03960 ArsC family ND011_04635 PF00501 AMP-binding enzyme ND011_04660 PF01292 Prokaryotic cytochrome b561 ND011_04670 PF00343 Carbohydrate phosphorylase ND011_04680 PF00072 Response regulator receiver domain ND011_04680 PF00486 Transcriptional regulatory protein, C terminal ND011_04690 PF00483 Nucleotidyl transferase ND011_04700 PF07238 PilZ domain ND011_04700 PF03552 Cellulose synthase ND011_04700 PF00535 Glycosyl transferase family 2 ND011_04720 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND011_04720 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND011_04720 PF00703 Glycosyl hydrolases family 2 ND011_04720 PF16355 Domain of unknown function (DUF4982) ND011_04725 PF00072 Response regulator receiver domain ND011_04725 PF01627 Hpt domain ND011_04725 PF00512 His Kinase A (phospho-acceptor) domain ND011_04725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_04725 PF00672 HAMP domain ND011_04725 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND011_04730 PF00072 Response regulator receiver domain ND011_04730 PF00990 Diguanylate cyclase, GGDEF domain ND011_04735 PF00440 Bacterial regulatory proteins, tetR family ND011_04765 PF00196 Bacterial regulatory proteins, luxR family ND011_04770 PF00313 'Cold-shock' DNA-binding domain ND011_04775 PF00313 'Cold-shock' DNA-binding domain ND011_04780 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ND011_04790 PF00990 Diguanylate cyclase, GGDEF domain ND011_04790 PF05230 MASE2 domain ND011_04795 PF02416 mttA/Hcf106 family ND011_04800 PF04055 Radical SAM superfamily ND011_04800 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ND011_04805 PF03099 Biotin/lipoate A/B protein ligase family ND011_04810 PF04359 Protein of unknown function (DUF493) ND011_04815 PF07943 Penicillin-binding protein 5, C-terminal domain ND011_04815 PF00768 D-alanyl-D-alanine carboxypeptidase ND011_04820 PF03330 Lytic transglycolase ND011_04820 PF05036 Sporulation related domain ND011_04825 PF01098 Cell cycle protein ND011_04830 PF03717 Penicillin-binding Protein dimerisation domain ND011_04830 PF00905 Penicillin binding protein transpeptidase domain ND011_04835 PF02590 Predicted SPOUT methyltransferase ND011_04845 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain ND011_04845 PF00589 Phage integrase family ND011_04905 PF00929 Exonuclease ND011_04970 PF00772 DnaB-like helicase N terminal domain ND011_04970 PF03796 DnaB-like helicase C terminal domain ND011_04995 PF00149 Calcineurin-like phosphoesterase ND011_05030 PF03245 Bacteriophage Rz lysis protein ND011_05070 PF01343 Peptidase family S49 ND011_05110 PF04984 Phage tail sheath protein subtilisin-like domain ND011_05110 PF17482 Phage tail sheath C-terminal domain ND011_05150 PF04865 Baseplate J-like protein ND011_05165 PF07484 Phage Tail Collar Domain ND011_05165 PF08400 Prophage tail fibre N-terminal ND011_05165 PF03335 Phage tail fibre repeat ND011_05170 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND011_05175 PF01467 Cytidylyltransferase-like ND011_05180 PF06144 DNA polymerase III, delta subunit ND011_05180 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ND011_05185 PF04390 Lipopolysaccharide-assembly ND011_05190 PF08264 Anticodon-binding domain of tRNA ND011_05190 PF00133 tRNA synthetases class I (I, L, M and V) ND011_05190 PF13603 Leucyl-tRNA synthetase, Domain 2 ND011_05195 PF07295 Zinc-ribbon containing domain ND011_05200 PF00005 ABC transporter ND011_05205 PF00528 Binding-protein-dependent transport system inner membrane component ND011_05210 PF00528 Binding-protein-dependent transport system inner membrane component ND011_05215 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND011_05220 PF00795 Carbon-nitrogen hydrolase ND011_05225 PF00571 CBS domain ND011_05225 PF03471 Transporter associated domain ND011_05230 PF02130 Uncharacterized protein family UPF0054 ND011_05235 PF02562 PhoH-like protein ND011_05240 PF01938 TRAM domain ND011_05240 PF04055 Radical SAM superfamily ND011_05240 PF00919 Uncharacterized protein family UPF0004 ND011_05245 PF01494 FAD binding domain ND011_05280 PF00733 Asparagine synthase ND011_05280 PF13537 Glutamine amidotransferase domain ND011_05285 PF13344 Haloacid dehalogenase-like hydrolase ND011_05290 PF00480 ROK family ND011_05290 PF01047 MarR family ND011_05295 PF01979 Amidohydrolase family ND011_05300 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ND011_05305 PF02378 Phosphotransferase system, EIIC ND011_05305 PF00367 phosphotransferase system, EIIB ND011_05305 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND011_05310 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND011_05310 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ND011_05315 PF03573 outer membrane porin, OprD family ND011_05320 PF13982 YbfN-like lipoprotein ND011_05325 PF02838 Glycosyl hydrolase family 20, domain 2 ND011_05325 PF00728 Glycosyl hydrolase family 20, catalytic domain ND011_05325 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ND011_05325 PF03173 Putative carbohydrate binding domain ND011_05330 PF01475 Ferric uptake regulator family ND011_05335 PF00258 Flavodoxin ND011_05340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND011_05340 PF00672 HAMP domain ND011_05340 PF02203 Tar ligand binding domain homologue ND011_05345 PF01402 Ribbon-helix-helix protein, copG family ND011_05350 PF12697 Alpha/beta hydrolase family ND011_05355 PF03925 SeqA protein C-terminal domain ND011_05355 PF17206 SeqA protein N-terminal domain ND011_05360 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND011_05360 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND011_05360 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND011_05360 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND011_05370 PF00072 Response regulator receiver domain ND011_05370 PF00486 Transcriptional regulatory protein, C terminal ND011_05375 PF00512 His Kinase A (phospho-acceptor) domain ND011_05375 PF02702 Osmosensitive K+ channel His kinase sensor domain ND011_05375 PF13492 GAF domain ND011_05375 PF13493 Domain of unknown function (DUF4118) ND011_05375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_05380 PF02669 K+-transporting ATPase, c chain ND011_05390 PF03814 Potassium-transporting ATPase A subunit ND011_05395 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) ND011_05400 PF10725 Protein of unknown function (DUF2517) ND011_05405 PF08349 Protein of unknown function (DUF1722) ND011_05410 PF00875 DNA photolyase ND011_05410 PF03441 FAD binding domain of DNA photolyase ND011_05415 PF02112 cAMP phosphodiesterases class-II ND011_05420 PF01784 NIF3 (NGG1p interacting factor 3) ND011_05425 PF02682 Carboxyltransferase domain, subdomain C and D ND011_05430 PF02626 Carboxyltransferase domain, subdomain A and B ND011_05435 PF03746 LamB/YcsF family ND011_05450 PF01470 Pyroglutamyl peptidase ND011_05460 PF00285 Citrate synthase, C-terminal domain ND011_05465 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND011_05470 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND011_05475 PF00890 FAD binding domain ND011_05475 PF02910 Fumarate reductase flavoprotein C-term ND011_05480 PF13085 2Fe-2S iron-sulfur cluster binding domain ND011_05485 PF02779 Transketolase, pyrimidine binding domain ND011_05485 PF16870 2-oxoglutarate dehydrogenase C-terminal ND011_05485 PF00676 Dehydrogenase E1 component ND011_05485 PF16078 2-oxoglutarate dehydrogenase N-terminus ND011_05490 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND011_05490 PF00364 Biotin-requiring enzyme ND011_05490 PF02817 e3 binding domain ND011_05495 PF08442 ATP-grasp domain ND011_05495 PF00549 CoA-ligase ND011_05500 PF02629 CoA binding domain ND011_05500 PF00549 CoA-ligase ND011_05505 PF00149 Calcineurin-like phosphoesterase ND011_05505 PF02872 5'-nucleotidase, C-terminal domain ND011_05510 PF01654 Cytochrome bd terminal oxidase subunit I ND011_05515 PF02322 Cytochrome bd terminal oxidase subunit II ND011_05520 PF08173 Membrane bound YbgT-like protein ND011_05525 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ND011_05530 PF03061 Thioesterase superfamily ND011_05535 PF01618 MotA/TolQ/ExbB proton channel family ND011_05540 PF02472 Biopolymer transport protein ExbD/TolR ND011_05545 PF06519 TolA C-terminal ND011_05545 PF06519 TolA C-terminal ND011_05550 PF07676 WD40-like Beta Propeller Repeat ND011_05550 PF04052 TolB amino-terminal domain ND011_05555 PF00691 OmpA family ND011_05560 PF16331 TolA binding protein trimerisation ND011_05560 PF13174 Tetratricopeptide repeat ND011_05600 PF02445 Quinolinate synthetase A protein ND011_05605 PF04973 Nicotinamide mononucleotide transporter ND011_05610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_05610 PF00512 His Kinase A (phospho-acceptor) domain ND011_05610 PF01627 Hpt domain ND011_05610 PF00989 PAS fold ND011_05610 PF00072 Response regulator receiver domain ND011_05610 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND011_05615 PF00196 Bacterial regulatory proteins, luxR family ND011_05615 PF00072 Response regulator receiver domain ND011_05620 PF00793 DAHP synthetase I family ND011_05625 PF00300 Histidine phosphatase superfamily (branch 1) ND011_05635 PF01263 Aldose 1-epimerase ND011_05640 PF08544 GHMP kinases C terminal ND011_05640 PF00288 GHMP kinases N terminal domain ND011_05640 PF10509 Galactokinase galactose-binding signature ND011_05645 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ND011_05645 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ND011_05650 PF16363 GDP-mannose 4,6 dehydratase ND011_05665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_05665 PF03459 TOBE domain ND011_05670 PF10766 Multidrug efflux pump-associated protein AcrZ ND011_05680 PF00528 Binding-protein-dependent transport system inner membrane component ND011_05685 PF00005 ABC transporter ND011_05685 PF03459 TOBE domain ND011_05695 PF10282 Lactonase, 7-bladed beta-propeller ND011_05700 PF00202 Aminotransferase class-III ND011_05705 PF04055 Radical SAM superfamily ND011_05705 PF06968 Biotin and Thiamin Synthesis associated domain ND011_05710 PF00155 Aminotransferase class I and II ND011_05715 PF08241 Methyltransferase domain ND011_05725 PF00005 ABC transporter ND011_05730 PF17757 UvrB interaction domain ND011_05730 PF00271 Helicase conserved C-terminal domain ND011_05730 PF04851 Type III restriction enzyme, res subunit ND011_05730 PF02151 UvrB/uvrC motif ND011_05730 PF12344 Ultra-violet resistance protein B ND011_05735 PF09905 DNA-binding protein VF530 ND011_05750 PF01032 FecCD transport family ND011_05755 PF00005 ABC transporter ND011_05760 PF01933 Uncharacterised protein family UPF0052 ND011_05765 PF06463 Molybdenum Cofactor Synthesis C ND011_05765 PF04055 Radical SAM superfamily ND011_05770 PF01967 MoaC family ND011_05775 PF02597 ThiS family ND011_05780 PF02391 MoaE protein ND011_05785 PF01027 Inhibitor of apoptosis-promoting Bax1 ND011_05800 PF00005 ABC transporter ND011_05805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND011_05810 PF09209 Tetracyclin repressor-like, C-terminal domain ND011_05810 PF00440 Bacterial regulatory proteins, tetR family ND011_05815 PF00270 DEAD/DEAH box helicase ND011_05815 PF00271 Helicase conserved C-terminal domain ND011_05820 PF01207 Dihydrouridine synthase (Dus) ND011_05830 PF00768 D-alanyl-D-alanine carboxypeptidase ND011_05835 PF09330 D-lactate dehydrogenase, membrane binding ND011_05835 PF01565 FAD binding domain ND011_05840 PF01928 CYTH domain ND011_05845 PF01844 HNH endonuclease ND011_05855 PF04226 Transglycosylase associated protein ND011_05860 PF00005 ABC transporter ND011_05870 PF00528 Binding-protein-dependent transport system inner membrane component ND011_05875 PF00528 Binding-protein-dependent transport system inner membrane component ND011_05880 PF07308 Protein of unknown function (DUF1456) ND011_05885 PF00581 Rhodanese-like domain ND011_05890 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND011_05895 PF00528 Binding-protein-dependent transport system inner membrane component ND011_05900 PF00005 ABC transporter ND011_05905 PF00528 Binding-protein-dependent transport system inner membrane component ND011_05910 PF13520 Amino acid permease ND011_05915 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND011_05915 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND011_05915 PF01276 Orn/Lys/Arg decarboxylase, major domain ND011_05925 PF00892 EamA-like transporter family ND011_05930 PF00267 Gram-negative porin ND011_05935 PF13307 Helicase C-terminal domain ND011_05935 PF06733 DEAD_2 ND011_05940 PF02885 Glycosyl transferase family, helical bundle domain ND011_05945 PF05971 RNA methyltransferase ND011_05950 PF00005 ABC transporter ND011_05955 PF00528 Binding-protein-dependent transport system inner membrane component ND011_05960 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND011_05965 PF00210 Ferritin-like domain ND011_05970 PF13649 Methyltransferase domain ND011_05975 PF00892 EamA-like transporter family ND011_05980 PF13505 Outer membrane protein beta-barrel domain ND011_05985 PF00571 CBS domain ND011_05985 PF01769 Divalent cation transporter ND011_05985 PF03448 MgtE intracellular N domain ND011_05990 PF01545 Cation efflux family ND011_05990 PF16916 Dimerisation domain of Zinc Transporter ND011_05995 PF00005 ABC transporter ND011_05995 PF12848 ABC transporter ND011_06000 PF00899 ThiF family ND011_06005 PF00994 Probable molybdopterin binding domain ND011_06005 PF03454 MoeA C-terminal region (domain IV) ND011_06005 PF03453 MoeA N-terminal region (domain I and II) ND011_06015 PF00756 Putative esterase ND011_06020 PF08240 Alcohol dehydrogenase GroES-like domain ND011_06020 PF00107 Zinc-binding dehydrogenase ND011_06025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_06025 PF03466 LysR substrate binding domain ND011_06030 PF06779 Uncharacterised MFS-type transporter YbfB ND011_06035 PF01227 GTP cyclohydrolase I ND011_06040 PF04235 Protein of unknown function (DUF418) ND011_06045 PF00356 Bacterial regulatory proteins, lacI family ND011_06050 PF13407 Periplasmic binding protein domain ND011_06055 PF00005 ABC transporter ND011_06060 PF02653 Branched-chain amino acid transport system / permease component ND011_06065 PF02698 DUF218 domain ND011_06070 PF03949 Malic enzyme, NAD binding domain ND011_06070 PF00390 Malic enzyme, N-terminal domain ND011_06080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_06080 PF03466 LysR substrate binding domain ND011_06085 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND011_06085 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ND011_06090 PF04172 LrgB-like family ND011_06095 PF03788 LrgA family ND011_06105 PF09334 tRNA synthetases class I (M) ND011_06105 PF01588 Putative tRNA binding domain ND011_06110 PF10609 NUBPL iron-transfer P-loop NTPase ND011_06115 PF00485 Phosphoribulokinase / Uridine kinase family ND011_06120 PF00692 dUTPase ND011_06125 PF05170 AsmA family ND011_06130 PF03606 C4-dicarboxylate anaerobic carrier ND011_06135 PF00571 CBS domain ND011_06135 PF03471 Transporter associated domain ND011_06135 PF03741 Integral membrane protein TerC family ND011_06140 PF00483 Nucleotidyl transferase ND011_06145 PF00483 Nucleotidyl transferase ND011_06150 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ND011_06150 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ND011_06160 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ND011_06160 PF01502 Phosphoribosyl-AMP cyclohydrolase ND011_06165 PF00977 Histidine biosynthesis protein ND011_06170 PF00977 Histidine biosynthesis protein ND011_06175 PF00117 Glutamine amidotransferase class-I ND011_06180 PF00475 Imidazoleglycerol-phosphate dehydratase ND011_06185 PF00155 Aminotransferase class I and II ND011_06190 PF00815 Histidinol dehydrogenase ND011_06195 PF01634 ATP phosphoribosyltransferase ND011_06195 PF08029 HisG, C-terminal domain ND011_06205 PF01370 NAD dependent epimerase/dehydratase family ND011_06210 PF00043 Glutathione S-transferase, C-terminal domain ND011_06210 PF13417 Glutathione S-transferase, N-terminal domain ND011_06225 PF01053 Cys/Met metabolism PLP-dependent enzyme ND011_06230 PF00291 Pyridoxal-phosphate dependent enzyme ND011_06230 PF00571 CBS domain ND011_06235 PF00768 D-alanyl-D-alanine carboxypeptidase ND011_06235 PF07943 Penicillin-binding protein 5, C-terminal domain ND011_06240 PF03313 Serine dehydratase alpha chain ND011_06240 PF03315 Serine dehydratase beta chain ND011_06250 PF00455 DeoR C terminal sensor domain ND011_06250 PF08220 DeoR-like helix-turn-helix domain ND011_06255 PF01791 DeoC/LacD family aldolase ND011_06260 PF01569 PAP2 superfamily ND011_06270 PF06826 Predicted Permease Membrane Region ND011_06270 PF02080 TrkA-C domain ND011_06275 PF00462 Glutaredoxin ND011_06280 PF07214 Protein of unknown function (DUF1418) ND011_06285 PF10722 Putative bacterial sensory transduction regulator ND011_06290 PF13416 Bacterial extracellular solute-binding protein ND011_06295 PF00005 ABC transporter ND011_06295 PF08402 TOBE domain ND011_06300 PF00528 Binding-protein-dependent transport system inner membrane component ND011_06305 PF00528 Binding-protein-dependent transport system inner membrane component ND011_06310 PF10767 Protein of unknown function (DUF2593) ND011_06315 PF05958 tRNA (Uracil-5-)-methyltransferase ND011_06320 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND011_06325 PF00528 Binding-protein-dependent transport system inner membrane component ND011_06330 PF00528 Binding-protein-dependent transport system inner membrane component ND011_06335 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND011_06340 PF00005 ABC transporter ND011_06345 PF12883 Protein of unknown function (DUF3828) ND011_06350 PF01906 Putative heavy-metal-binding ND011_06355 PF01370 NAD dependent epimerase/dehydratase family ND011_06360 PF11066 Protein of unknown function (DUF2867) ND011_06360 PF13460 NAD(P)H-binding ND011_06365 PF01212 Beta-eliminating lyase ND011_06370 PF00970 Oxidoreductase FAD-binding domain ND011_06370 PF00111 2Fe-2S iron-sulfur cluster binding domain ND011_06370 PF00175 Oxidoreductase NAD-binding domain ND011_06375 PF03063 Prismane/CO dehydrogenase family ND011_06380 PF03956 Lysine exporter LysO ND011_06385 PF11398 Protein of unknown function (DUF2813) ND011_06390 PF04393 Protein of unknown function (DUF535) ND011_06395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND011_06400 PF02687 FtsX-like permease family ND011_06400 PF00005 ABC transporter ND011_06400 PF12704 MacB-like periplasmic core domain ND011_06405 PF00313 'Cold-shock' DNA-binding domain ND011_06410 PF02617 ATP-dependent Clp protease adaptor protein ClpS ND011_06415 PF00004 ATPase family associated with various cellular activities (AAA) ND011_06415 PF07724 AAA domain (Cdc48 subfamily) ND011_06415 PF17871 AAA lid domain ND011_06415 PF02861 Clp amino terminal domain, pathogenicity island component ND011_06415 PF10431 C-terminal, D2-small domain, of ClpB protein ND011_06420 PF01176 Translation initiation factor 1A / IF-1 ND011_06425 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ND011_06430 PF00664 ABC transporter transmembrane region ND011_06430 PF00005 ABC transporter ND011_06435 PF00664 ABC transporter transmembrane region ND011_06435 PF00005 ABC transporter ND011_06440 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND011_06445 PF01037 Lrp/AsnC ligand binding domain ND011_06450 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND011_06450 PF17854 FtsK alpha domain ND011_06450 PF09397 Ftsk gamma domain ND011_06450 PF01580 FtsK/SpoIIIE family ND011_06455 PF03548 Outer membrane lipoprotein carrier protein LolA ND011_06460 PF00004 ATPase family associated with various cellular activities (AAA) ND011_06460 PF16193 AAA C-terminal domain ND011_06460 PF12002 MgsA AAA+ ATPase C terminal ND011_06465 PF02403 Seryl-tRNA synthetase N-terminal domain ND011_06465 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND011_06470 PF07690 Major Facilitator Superfamily ND011_06475 PF04055 Radical SAM superfamily ND011_06480 PF01228 Glycine radical ND011_06480 PF02901 Pyruvate formate lyase-like ND011_06485 PF01226 Formate/nitrite transporter ND011_06490 PF18381 YcaO cyclodehydratase C-terminal domain ND011_06490 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ND011_06495 PF00710 Asparaginase, N-terminal ND011_06495 PF17763 Glutaminase/Asparaginase C-terminal domain ND011_06500 PF00266 Aminotransferase class-V ND011_06505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND011_06510 PF02224 Cytidylate kinase ND011_06515 PF00575 S1 RNA binding domain ND011_06520 PF00216 Bacterial DNA-binding protein ND011_06525 PF03772 Competence protein ND011_06525 PF00753 Metallo-beta-lactamase superfamily ND011_06530 PF00664 ABC transporter transmembrane region ND011_06530 PF00005 ABC transporter ND011_06535 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ND011_06540 PF07063 Domain of unknown function (DUF1338) ND011_06545 PF00313 'Cold-shock' DNA-binding domain ND011_06550 PF00313 'Cold-shock' DNA-binding domain ND011_06555 PF03966 Trm112p-like protein ND011_06560 PF02348 Cytidylyltransferase ND011_06565 PF01636 Phosphotransferase enzyme family ND011_06570 PF02698 DUF218 domain ND011_06575 PF13847 Methyltransferase domain ND011_06580 PF03882 MukF winged-helix domain ND011_06580 PF17193 MukF C-terminal domain ND011_06580 PF17192 MukF middle domain ND011_06585 PF04288 MukE-like family ND011_06590 PF04310 MukB N-terminal ND011_06590 PF16330 MukB hinge domain ND011_06595 PF01471 Putative peptidoglycan binding domain ND011_06595 PF03734 L,D-transpeptidase catalytic domain ND011_06600 PF05951 Bacterial protein of unknown function (DUF882) ND011_06605 PF00753 Metallo-beta-lactamase superfamily ND011_06610 PF00155 Aminotransferase class I and II ND011_06615 PF00267 Gram-negative porin ND011_06620 PF01336 OB-fold nucleic acid binding domain ND011_06620 PF00152 tRNA synthetases class II (D, K and N) ND011_06625 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ND011_06625 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ND011_06630 PF11940 Domain of unknown function (DUF3458) Ig-like fold ND011_06630 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ND011_06630 PF01433 Peptidase family M1 domain ND011_06635 PF01180 Dihydroorotate dehydrogenase ND011_06640 PF07126 Cell-division protein ZapC ND011_06645 PF03473 MOSC domain ND011_06645 PF00111 2Fe-2S iron-sulfur cluster binding domain ND011_06645 PF03476 MOSC N-terminal beta barrel domain ND011_06650 PF01170 Putative RNA methylase family UPF0020 ND011_06650 PF02926 THUMP domain ND011_06650 PF10672 S-adenosylmethionine-dependent methyltransferase ND011_06655 PF00005 ABC transporter ND011_06655 PF16326 ABC transporter C-terminal domain ND011_06655 PF12848 ABC transporter ND011_06660 PF04403 Paraquat-inducible protein A ND011_06665 PF02470 MlaD protein ND011_06670 PF03886 ABC-type transport auxiliary lipoprotein component ND011_06675 PF04957 Ribosome modulation factor ND011_06680 PF07977 FabA-like domain ND011_06685 PF05362 Lon protease (S16) C-terminal proteolytic domain ND011_06685 PF13654 AAA domain ND011_06690 PF17414 MatP C-terminal ribbon-helix-helix domain ND011_06690 PF06303 MatP N-terminal domain ND011_06695 PF00691 OmpA family ND011_06695 PF01389 OmpA-like transmembrane domain ND011_06700 PF03846 Cell division inhibitor SulA ND011_06705 PF04994 TfoX C-terminal domain ND011_06705 PF04993 TfoX N-terminal domain ND011_06710 PF12805 FUSC-like inner membrane protein yccS ND011_06715 PF03733 Inner membrane component domain ND011_06720 PF00580 UvrD/REP helicase N-terminal domain ND011_06720 PF13361 UvrD-like helicase C-terminal domain ND011_06720 PF12462 DNA helicase IV / RNA helicase N terminal ND011_06725 PF02142 MGS-like domain ND011_06730 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ND011_06735 PF13380 CoA binding domain ND011_06740 PF08755 Hemimethylated DNA-binding protein YccV like ND011_06745 PF10672 S-adenosylmethionine-dependent methyltransferase ND011_06745 PF17785 PUA-like domain ND011_06750 PF00708 Acylphosphatase ND011_06755 PF04358 DsrC like protein ND011_06765 PF00484 Carbonic anhydrase ND011_06770 PF02080 TrkA-C domain ND011_06770 PF03471 Transporter associated domain ND011_06770 PF00999 Sodium/hydrogen exchanger family ND011_06780 PF01757 Acyltransferase family ND011_06785 PF04349 Periplasmic glucan biosynthesis protein, MdoG ND011_06790 PF00535 Glycosyl transferase family 2 ND011_06800 PF01797 Transposase IS200 like ND011_06805 PF12323 Helix-turn-helix domain ND011_06805 PF01385 Probable transposase ND011_06805 PF07282 Putative transposase DNA-binding domain ND011_06810 PF00854 POT family ND011_06820 PF03279 Bacterial lipid A biosynthesis acyltransferase ND011_06825 PF12368 Rhodanase C-terminal ND011_06825 PF17773 UPF0176 acylphosphatase like domain ND011_06825 PF00581 Rhodanese-like domain ND011_06830 PF01594 AI-2E family transporter ND011_06835 PF00196 Bacterial regulatory proteins, luxR family ND011_06840 PF01266 FAD dependent oxidoreductase ND011_06845 PF13991 BssS protein family ND011_06850 PF06183 DinI-like family ND011_06855 PF01979 Amidohydrolase family ND011_06860 PF03992 Antibiotic biosynthesis monooxygenase ND011_06870 PF00575 S1 RNA binding domain ND011_06870 PF12111 Polyribonucleotide phosphorylase C terminal ND011_06870 PF10150 Ribonuclease E/G family ND011_06875 PF00849 RNA pseudouridylate synthase ND011_06875 PF01479 S4 domain ND011_06880 PF02545 Maf-like protein ND011_06885 PF02620 Large ribosomal RNA subunit accumulation protein YceD ND011_06890 PF01783 Ribosomal L32p protein family ND011_06895 PF02504 Fatty acid synthesis protein ND011_06900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ND011_06900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ND011_06905 PF00698 Acyl transferase domain ND011_06915 PF00550 Phosphopantetheine attachment site ND011_06920 PF00109 Beta-ketoacyl synthase, N-terminal domain ND011_06920 PF02801 Beta-ketoacyl synthase, C-terminal domain ND011_06925 PF01063 Amino-transferase class IV ND011_06930 PF02618 YceG-like family ND011_06935 PF02223 Thymidylate kinase ND011_06940 PF09115 DNA polymerase III, delta subunit, C terminal ND011_06945 PF01026 TatD related DNase ND011_06950 PF00367 phosphotransferase system, EIIB ND011_06950 PF02378 Phosphotransferase system, EIIC ND011_06955 PF01230 HIT domain ND011_06960 PF07233 Protein of unknown function (DUF1425) ND011_06965 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND011_06965 PF13036 Peptidoglycan-synthase activator LpoB ND011_06970 PF01636 Phosphotransferase enzyme family ND011_06975 PF00933 Glycosyl hydrolase family 3 N terminal domain ND011_06980 PF05728 Uncharacterised protein family (UPF0227) ND011_06985 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND011_06990 PF05433 Glycine zipper 2TM domain ND011_06995 PF03461 TRCF domain ND011_06995 PF17757 UvrB interaction domain ND011_06995 PF00270 DEAD/DEAH box helicase ND011_06995 PF00271 Helicase conserved C-terminal domain ND011_06995 PF02559 CarD-like/TRCF domain ND011_07000 PF02687 FtsX-like permease family ND011_07000 PF12704 MacB-like periplasmic core domain ND011_07005 PF00005 ABC transporter ND011_07010 PF02687 FtsX-like permease family ND011_07010 PF12704 MacB-like periplasmic core domain ND011_07015 PF00480 ROK family ND011_07020 PF02146 Sir2 family ND011_07025 PF01546 Peptidase family M20/M25/M40 ND011_07025 PF07687 Peptidase dimerisation domain ND011_07030 PF08007 Cupin superfamily protein ND011_07035 PF08918 PhoQ Sensor ND011_07035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_07040 PF00072 Response regulator receiver domain ND011_07040 PF00486 Transcriptional regulatory protein, C terminal ND011_07050 PF08328 Adenylosuccinate lyase C-terminal ND011_07050 PF00206 Lyase ND011_07055 PF04356 Protein of unknown function (DUF489) ND011_07065 PF00293 NUDIX domain ND011_07070 PF00849 RNA pseudouridylate synthase ND011_07075 PF00180 Isocitrate/isopropylmalate dehydrogenase ND011_07080 PF03472 Autoinducer binding domain ND011_07080 PF00196 Bacterial regulatory proteins, luxR family ND011_07085 PF00765 Autoinducer synthase ND011_07090 PF00232 Glycosyl hydrolase family 1 ND011_07100 PF01432 Peptidase family M3 ND011_07105 PF02203 Tar ligand binding domain homologue ND011_07105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND011_07105 PF00672 HAMP domain ND011_07125 PF01797 Transposase IS200 like ND011_07130 PF07282 Putative transposase DNA-binding domain ND011_07130 PF01385 Probable transposase ND011_07130 PF12323 Helix-turn-helix domain ND011_07140 PF00072 Response regulator receiver domain ND011_07145 PF00989 PAS fold ND011_07145 PF17203 Single cache domain 3 ND011_07145 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND011_07145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_07150 PF00939 Sodium:sulfate symporter transmembrane region ND011_07155 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ND011_07155 PF00413 Matrixin ND011_07155 PF08548 Peptidase M10 serralysin C terminal ND011_07160 PF02974 Protease inhibitor Inh ND011_07165 PF00664 ABC transporter transmembrane region ND011_07165 PF00005 ABC transporter ND011_07170 PF00529 HlyD membrane-fusion protein of T1SS ND011_07175 PF02321 Outer membrane efflux protein ND011_07190 PF12833 Helix-turn-helix domain ND011_07190 PF02311 AraC-like ligand binding domain ND011_07195 PF02562 PhoH-like protein ND011_07200 PF01699 Sodium/calcium exchanger protein ND011_07205 PF08021 Siderophore-interacting FAD-binding domain ND011_07205 PF04954 Siderophore-interacting protein ND011_07210 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ND011_07210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_07210 PF00672 HAMP domain ND011_07210 PF07730 Histidine kinase ND011_07220 PF02322 Cytochrome bd terminal oxidase subunit II ND011_07225 PF01654 Cytochrome bd terminal oxidase subunit I ND011_07230 PF00155 Aminotransferase class I and II ND011_07230 PF00392 Bacterial regulatory proteins, gntR family ND011_07235 PF00202 Aminotransferase class-III ND011_07240 PF04958 Arginine N-succinyltransferase beta subunit ND011_07245 PF00171 Aldehyde dehydrogenase family ND011_07250 PF04996 Succinylarginine dihydrolase ND011_07260 PF00267 Gram-negative porin ND011_07270 PF01979 Amidohydrolase family ND011_07275 PF07702 UTRA domain ND011_07275 PF00392 Bacterial regulatory proteins, gntR family ND011_07280 PF01979 Amidohydrolase family ND011_07285 PF05962 HutD ND011_07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_07290 PF03466 LysR substrate binding domain ND011_07300 PF03824 High-affinity nickel-transport protein ND011_07305 PF00708 Acylphosphatase ND011_07305 PF17788 HypF Kae1-like domain ND011_07305 PF01300 Telomere recombination ND011_07305 PF07503 HypF finger ND011_07310 PF01568 Molydopterin dinucleotide binding domain ND011_07310 PF00384 Molybdopterin oxidoreductase ND011_07310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND011_07315 PF12800 4Fe-4S binding domain ND011_07315 PF13247 4Fe-4S dicluster domain ND011_07320 PF01750 Hydrogenase maturation protease ND011_07325 PF07450 Formate hydrogenlyase maturation protein HycH ND011_07330 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND011_07335 PF12838 4Fe-4S dicluster domain ND011_07340 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND011_07340 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND011_07340 PF00374 Nickel-dependent hydrogenase ND011_07345 PF00146 NADH dehydrogenase ND011_07350 PF00361 Proton-conducting membrane transporter ND011_07355 PF13247 4Fe-4S dicluster domain ND011_07360 PF11046 Transcriptional repressor of hyc and hyp operons ND011_07365 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ND011_07370 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND011_07375 PF01455 HupF/HypC family ND011_07380 PF01924 Hydrogenase formation hypA family ND011_07385 PF00586 AIR synthase related protein, N-terminal domain ND011_07385 PF02769 AIR synthase related protein, C-terminal domain ND011_07390 PF01590 GAF domain ND011_07390 PF00158 Sigma-54 interaction domain ND011_07390 PF02954 Bacterial regulatory protein, Fis family ND011_07400 PF13954 PapC N-terminal domain ND011_07400 PF00577 Outer membrane usher protein ND011_07405 PF02753 Pili assembly chaperone PapD, C-terminal domain ND011_07405 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND011_07420 PF12833 Helix-turn-helix domain ND011_07425 PF01926 50S ribosome-binding GTPase ND011_07425 PF06071 Protein of unknown function (DUF933) ND011_07435 PF01195 Peptidyl-tRNA hydrolase ND011_07440 PF10762 Protein of unknown function (DUF2583) ND011_07445 PF14572 Phosphoribosyl synthetase-associated domain ND011_07445 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ND011_07450 PF00288 GHMP kinases N terminal domain ND011_07450 PF08544 GHMP kinases C terminal ND011_07455 PF03550 Outer membrane lipoprotein LolB ND011_07460 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ND011_07460 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ND011_07460 PF01488 Shikimate / quinate 5-dehydrogenase ND011_07465 PF03462 PCRF domain ND011_07465 PF00472 RF-1 domain ND011_07470 PF13847 Methyltransferase domain ND011_07470 PF17827 PrmC N-terminal domain ND011_07475 PF04247 Invasion gene expression up-regulator, SirB ND011_07480 PF13369 Transglutaminase-like superfamily ND011_07485 PF00793 DAHP synthetase I family ND011_07490 PF01740 STAS domain ND011_07490 PF00916 Sulfate permease family ND011_07495 PF00990 Diguanylate cyclase, GGDEF domain ND011_07505 PF03009 Glycerophosphoryl diester phosphodiesterase family ND011_07515 PF00854 POT family ND011_07520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND011_07525 PF02811 PHP domain ND011_07530 PF02613 Nitrate reductase delta subunit ND011_07535 PF07273 Protein of unknown function (DUF1439) ND011_07545 PF07690 Major Facilitator Superfamily ND011_07550 PF13302 Acetyltransferase (GNAT) domain ND011_07555 PF04337 Protein of unknown function, DUF480 ND011_07560 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND011_07565 PF03023 Lipid II flippase MurJ ND011_07570 PF08479 POTRA domain, ShlB-type ND011_07570 PF17287 POTRA domain ND011_07570 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND011_07575 PF13332 Hemagglutinin repeat ND011_07575 PF05860 haemagglutination activity domain ND011_07585 PF03485 Arginyl tRNA synthetase N terminal domain ND011_07585 PF05746 DALR anticodon binding domain ND011_07585 PF00750 tRNA synthetases class I (R) ND011_07590 PF06185 YecM protein ND011_07595 PF03932 CutC family ND011_07600 PF08003 Protein of unknown function (DUF1698) ND011_07605 PF13649 Methyltransferase domain ND011_07610 PF01124 MAPEG family ND011_07615 PF01904 Protein of unknown function DUF72 ND011_07625 PF02938 GAD domain ND011_07625 PF00152 tRNA synthetases class II (D, K and N) ND011_07625 PF01336 OB-fold nucleic acid binding domain ND011_07630 PF00293 NUDIX domain ND011_07635 PF01709 Transcriptional regulator ND011_07640 PF02075 Crossover junction endodeoxyribonuclease RuvC ND011_07645 PF07499 RuvA, C-terminal domain ND011_07645 PF01330 RuvA N terminal domain ND011_07650 PF17864 RuvB AAA lid domain ND011_07650 PF05491 RuvB C-terminal winged helix domain ND011_07650 PF05496 Holliday junction DNA helicase RuvB P-loop domain ND011_07655 PF00854 POT family ND011_07660 PF00950 ABC 3 transport family ND011_07665 PF00005 ABC transporter ND011_07670 PF01297 Zinc-uptake complex component A periplasmic ND011_07675 PF08525 Opacity-associated protein A N-terminal motif ND011_07675 PF01551 Peptidase family M23 ND011_07675 PF01476 LysM domain ND011_07680 PF03279 Bacterial lipid A biosynthesis acyltransferase ND011_07685 PF02887 Pyruvate kinase, alpha/beta domain ND011_07685 PF00224 Pyruvate kinase, barrel domain ND011_07690 PF01380 SIS domain ND011_07690 PF01418 Helix-turn-helix domain, rpiR family ND011_07695 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ND011_07695 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ND011_07700 PF01081 KDPG and KHG aldolase ND011_07705 PF00893 Small Multidrug Resistance protein ND011_07710 PF00893 Small Multidrug Resistance protein ND011_07715 PF01042 Endoribonuclease L-PSP ND011_07720 PF04851 Type III restriction enzyme, res subunit ND011_07720 PF13307 Helicase C-terminal domain ND011_07725 PF00814 Glycoprotease family ND011_07730 PF03843 Outer membrane lipoprotein Slp family ND011_07735 PF00501 AMP-binding enzyme ND011_07735 PF13193 AMP-binding enzyme C-terminal domain ND011_07740 PF01612 3'-5' exonuclease ND011_07740 PF00570 HRDC domain ND011_07745 PF03776 Septum formation topological specificity factor MinE ND011_07750 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ND011_07755 PF05209 Septum formation inhibitor MinC, N-terminal domain ND011_07755 PF03775 Septum formation inhibitor MinC, C-terminal domain ND011_07760 PF05166 YcgL domain ND011_07765 PF01557 Fumarylacetoacetate (FAA) hydrolase family ND011_07770 PF03692 Putative zinc- or iron-chelating domain ND011_07785 PF02600 Disulfide bond formation protein DsbB ND011_07790 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ND011_07795 PF00392 Bacterial regulatory proteins, gntR family ND011_07795 PF07840 FadR C-terminal domain ND011_07800 PF04293 SpoVR like protein ND011_07805 PF01266 FAD dependent oxidoreductase ND011_07810 PF01168 Alanine racemase, N-terminal domain ND011_07810 PF00842 Alanine racemase, C-terminal domain ND011_07815 PF07690 Major Facilitator Superfamily ND011_07825 PF13426 PAS domain ND011_07825 PF00990 Diguanylate cyclase, GGDEF domain ND011_07825 PF00563 EAL domain ND011_07830 PF03466 LysR substrate binding domain ND011_07830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_07835 PF03306 Alpha-acetolactate decarboxylase ND011_07840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND011_07840 PF00205 Thiamine pyrophosphate enzyme, central domain ND011_07840 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND011_07845 PF04285 Protein of unknown function (DUF444) ND011_07850 PF08298 PrkA AAA domain ND011_07850 PF06798 PrkA serine protein kinase C-terminal domain ND011_07860 PF06629 MltA-interacting protein MipA ND011_07865 PF00884 Sulfatase ND011_07870 PF01263 Aldose 1-epimerase ND011_07875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND011_07875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND011_07880 PF01641 SelR domain ND011_07885 PF07023 Protein of unknown function (DUF1315) ND011_07890 PF00857 Isochorismatase family ND011_07895 PF17763 Glutaminase/Asparaginase C-terminal domain ND011_07895 PF00710 Asparaginase, N-terminal ND011_07900 PF01343 Peptidase family S49 ND011_07905 PF00881 Nitroreductase family ND011_07910 PF00586 AIR synthase related protein, N-terminal domain ND011_07910 PF02769 AIR synthase related protein, C-terminal domain ND011_07915 PF01131 DNA topoisomerase ND011_07915 PF01751 Toprim domain ND011_07920 PF07383 Protein of unknown function (DUF1496) ND011_07925 PF00293 NUDIX domain ND011_07930 PF03372 Endonuclease/Exonuclease/phosphatase family ND011_07940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_07940 PF03466 LysR substrate binding domain ND011_07960 PF00551 Formyl transferase ND011_07960 PF01842 ACT domain ND011_07965 PF02810 SEC-C motif ND011_07970 PF01734 Patatin-like phospholipase ND011_07975 PF00072 Response regulator receiver domain ND011_07980 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND011_07980 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND011_07980 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND011_07985 PF00816 H-NS histone family ND011_07990 PF00265 Thymidine kinase ND011_07995 PF00171 Aldehyde dehydrogenase family ND011_07995 PF00465 Iron-containing alcohol dehydrogenase ND011_08005 PF01914 MarC family integral membrane protein ND011_08010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND011_08015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND011_08020 PF00528 Binding-protein-dependent transport system inner membrane component ND011_08025 PF12911 N-terminal TM domain of oligopeptide transport permease C ND011_08025 PF00528 Binding-protein-dependent transport system inner membrane component ND011_08030 PF00005 ABC transporter ND011_08030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND011_08035 PF00005 ABC transporter ND011_08035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND011_08040 PF04269 Protein of unknown function, DUF440 ND011_08045 PF13091 PLD-like domain ND011_08045 PF13396 Phospholipase_D-nuclease N-terminal ND011_08065 PF03795 YCII-related domain ND011_08080 PF00486 Transcriptional regulatory protein, C terminal ND011_08090 PF02753 Pili assembly chaperone PapD, C-terminal domain ND011_08090 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND011_08095 PF00577 Outer membrane usher protein ND011_08095 PF13953 PapC C-terminal domain ND011_08095 PF13954 PapC N-terminal domain ND011_08115 PF03544 Gram-negative bacterial TonB protein C-terminal ND011_08120 PF03061 Thioesterase superfamily ND011_08125 PF04279 Intracellular septation protein A ND011_08130 PF01740 STAS domain ND011_08130 PF00916 Sulfate permease family ND011_08140 PF03692 Putative zinc- or iron-chelating domain ND011_08145 PF03922 OmpW family ND011_08155 PF00290 Tryptophan synthase alpha chain ND011_08160 PF00291 Pyridoxal-phosphate dependent enzyme ND011_08165 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ND011_08165 PF00218 Indole-3-glycerol phosphate synthase ND011_08170 PF00591 Glycosyl transferase family, a/b domain ND011_08170 PF02885 Glycosyl transferase family, helical bundle domain ND011_08175 PF00117 Glutamine amidotransferase class-I ND011_08180 PF04715 Anthranilate synthase component I, N terminal region ND011_08180 PF00425 chorismate binding enzyme ND011_08185 PF02811 PHP domain ND011_08190 PF01300 Telomere recombination ND011_08210 PF00849 RNA pseudouridylate synthase ND011_08210 PF01479 S4 domain ND011_08215 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ND011_08220 PF00106 short chain dehydrogenase ND011_08225 PF01343 Peptidase family S49 ND011_08225 PF08496 Peptidase family S49 N-terminal ND011_08230 PF10692 Protein of unknown function (DUF2498) ND011_08235 PF01751 Toprim domain ND011_08235 PF08272 Topoisomerase I zinc-ribbon-like ND011_08235 PF01131 DNA topoisomerase ND011_08235 PF01396 Topoisomerase DNA binding C4 zinc finger ND011_08240 PF03466 LysR substrate binding domain ND011_08240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_08255 PF00330 Aconitase family (aconitate hydratase) ND011_08255 PF00694 Aconitase C-terminal domain ND011_08260 PF00925 GTP cyclohydrolase II ND011_08265 PF01569 PAP2 superfamily ND011_08270 PF06305 Lipopolysaccharide assembly protein A domain ND011_08275 PF18073 Rubredoxin metal binding domain ND011_08285 PF07338 Protein of unknown function (DUF1471) ND011_08290 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND011_08295 PF01253 Translation initiation factor SUI1 ND011_08300 PF05433 Glycine zipper 2TM domain ND011_08305 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND011_08310 PF00563 EAL domain ND011_08310 PF00990 Diguanylate cyclase, GGDEF domain ND011_08310 PF05231 MASE1 ND011_08310 PF08447 PAS fold ND011_08310 PF08448 PAS fold ND011_08310 PF13426 PAS domain ND011_08315 PF00575 S1 RNA binding domain ND011_08315 PF08206 Ribonuclease B OB domain ND011_08315 PF00773 RNB domain ND011_08320 PF10576 Iron-sulfur binding domain of endonuclease III ND011_08320 PF00633 Helix-hairpin-helix motif ND011_08320 PF00730 HhH-GPD superfamily base excision DNA repair protein ND011_08325 PF02508 Rnf-Nqr subunit, membrane protein ND011_08330 PF04205 FMN-binding domain ND011_08335 PF03116 NQR2, RnfD, RnfE family ND011_08340 PF12833 Helix-turn-helix domain ND011_08340 PF06445 GyrI-like small molecule binding domain ND011_08345 PF10531 SLBB domain ND011_08345 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND011_08345 PF13237 4Fe-4S dicluster domain ND011_08345 PF13375 RnfC Barrel sandwich hybrid domain ND011_08350 PF04060 Putative Fe-S cluster ND011_08355 PF02508 Rnf-Nqr subunit, membrane protein ND011_08360 PF10754 Protein of unknown function (DUF2569) ND011_08365 PF01268 Formate--tetrahydrofolate ligase ND011_08370 PF09313 Domain of unknown function (DUF1971) ND011_08370 PF03848 Tellurite resistance protein TehB ND011_08375 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND011_08375 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ND011_08380 PF13593 SBF-like CPA transporter family (DUF4137) ND011_08385 PF00962 Adenosine/AMP deaminase ND011_08390 PF06097 Bacterial protein of unknown function (DUF945) ND011_08395 PF01238 Phosphomannose isomerase type I ND011_08400 PF10415 Fumarase C C-terminus ND011_08400 PF00206 Lyase ND011_08405 PF05472 DNA replication terminus site-binding protein (Ter protein) ND011_08410 PF00480 ROK family ND011_08420 PF00654 Voltage gated chloride channel ND011_08425 PF06649 Protein of unknown function (DUF1161) ND011_08430 PF06932 Protein of unknown function (DUF1283) ND011_08435 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ND011_08440 PF00106 short chain dehydrogenase ND011_08445 PF01510 N-acetylmuramoyl-L-alanine amidase ND011_08465 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ND011_08465 PF01048 Phosphorylase superfamily ND011_08505 PF13419 Haloacid dehalogenase-like hydrolase ND011_08515 PF06445 GyrI-like small molecule binding domain ND011_08520 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND011_08520 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ND011_08525 PF00027 Cyclic nucleotide-binding domain ND011_08525 PF13545 Crp-like helix-turn-helix domain ND011_08530 PF00582 Universal stress protein family ND011_08540 PF00455 DeoR C terminal sensor domain ND011_08540 PF08220 DeoR-like helix-turn-helix domain ND011_08545 PF03611 PTS system sugar-specific permease component ND011_08550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND011_08555 PF00596 Class II Aldolase and Adducin N-terminal domain ND011_08560 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND011_08565 PF01261 Xylose isomerase-like TIM barrel ND011_08570 PF02233 NAD(P) transhydrogenase beta subunit ND011_08575 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ND011_08575 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ND011_08575 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ND011_08580 PF07338 Protein of unknown function (DUF1471) ND011_08585 PF13520 Amino acid permease ND011_08595 PF00486 Transcriptional regulatory protein, C terminal ND011_08595 PF00072 Response regulator receiver domain ND011_08600 PF00672 HAMP domain ND011_08600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_08600 PF00512 His Kinase A (phospho-acceptor) domain ND011_08605 PF00080 Copper/zinc superoxide dismutase (SODC) ND011_08610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND011_08615 PF12833 Helix-turn-helix domain ND011_08620 PF01161 Phosphatidylethanolamine-binding protein ND011_08625 PF06392 Acid shock protein repeat ND011_08630 PF00089 Trypsin ND011_08635 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ND011_08635 PF11898 Domain of unknown function (DUF3418) ND011_08635 PF04408 Helicase associated domain (HA2) ND011_08635 PF00271 Helicase conserved C-terminal domain ND011_08635 PF00270 DEAD/DEAH box helicase ND011_08640 PF02525 Flavodoxin-like fold ND011_08645 PF07027 Protein of unknown function (DUF1318) ND011_08650 PF13617 YnbE-like lipoprotein ND011_08660 PF11739 Dicarboxylate transport ND011_08665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND011_08665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND011_08670 PF03724 META domain ND011_08675 PF03891 Domain of unknown function (DUF333) ND011_08680 PF02308 MgtC family ND011_08685 PF00893 Small Multidrug Resistance protein ND011_08690 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ND011_08690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND011_08690 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ND011_08690 PF10371 Domain of unknown function ND011_08690 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ND011_08695 PF01171 PP-loop family ND011_08700 PF01544 CorA-like Mg2+ transporter protein ND011_08705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND011_08710 PF00246 Zinc carboxypeptidase ND011_08715 PF13378 Enolase C-terminal domain-like ND011_08715 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ND011_08720 PF08534 Redoxin ND011_08725 PF00158 Sigma-54 interaction domain ND011_08725 PF18024 Helix-turn-helix domain ND011_08730 PF09722 Protein of unknown function (DUF2384) ND011_08735 PF08808 RES domain ND011_08740 PF05128 Domain of unknown function (DUF697) ND011_08745 PF04317 YcjX-like family, DUF463 ND011_08750 PF09584 Phage shock protein PspD (Phageshock_PspD) ND011_08755 PF04024 PspC domain ND011_08760 PF06667 Phage shock protein B ND011_08765 PF04012 PspA/IM30 family ND011_08770 PF02954 Bacterial regulatory protein, Fis family ND011_08770 PF00158 Sigma-54 interaction domain ND011_08780 PF02917 Pertussis toxin, subunit 1 ND011_08785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND011_08790 PF00528 Binding-protein-dependent transport system inner membrane component ND011_08795 PF12911 N-terminal TM domain of oligopeptide transport permease C ND011_08795 PF00528 Binding-protein-dependent transport system inner membrane component ND011_08800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND011_08800 PF00005 ABC transporter ND011_08805 PF00005 ABC transporter ND011_08815 PF00854 POT family ND011_08825 PF00226 DnaJ domain ND011_08825 PF01556 DnaJ C terminal domain ND011_08835 PF04893 Yip1 domain ND011_08845 PF11656 YjbD family (DUF3811) ND011_08850 PF02798 Glutathione S-transferase, N-terminal domain ND011_08850 PF00043 Glutathione S-transferase, C-terminal domain ND011_08855 PF08543 Phosphomethylpyrimidine kinase ND011_08860 PF01479 S4 domain ND011_08860 PF00579 tRNA synthetases class I (W and Y) ND011_08865 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ND011_08865 PF01243 Pyridoxamine 5'-phosphate oxidase ND011_08870 PF03702 Anhydro-N-acetylmuramic acid kinase ND011_08875 PF05433 Glycine zipper 2TM domain ND011_08880 PF01047 MarR family ND011_08890 PF00248 Aldo/keto reductase family ND011_08895 PF06945 Protein of unknown function (DUF1289) ND011_08900 PF00884 Sulfatase ND011_08900 PF08019 Phosphoethanolamine transferase EptA/EptB ND011_08905 PF16925 Tetracyclin repressor-like, C-terminal domain ND011_08905 PF00440 Bacterial regulatory proteins, tetR family ND011_08910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND011_08915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND011_08920 PF00929 Exonuclease ND011_08925 PF00462 Glutaredoxin ND011_08930 PF00877 NlpC/P60 family ND011_08935 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND011_08935 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND011_08945 PF00356 Bacterial regulatory proteins, lacI family ND011_08950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_08950 PF03466 LysR substrate binding domain ND011_08955 PF07690 Major Facilitator Superfamily ND011_08965 PF00677 Lumazine binding domain ND011_08970 PF01554 MatE ND011_08990 PF00224 Pyruvate kinase, barrel domain ND011_08990 PF02887 Pyruvate kinase, alpha/beta domain ND011_08995 PF04728 Lipoprotein leucine-zipper ND011_09000 PF17969 L,D-transpeptidase C-terminal domain ND011_09000 PF01476 LysM domain ND011_09000 PF03734 L,D-transpeptidase catalytic domain ND011_09005 PF02657 Fe-S metabolism associated domain ND011_09010 PF00266 Aminotransferase class-V ND011_09015 PF01458 Uncharacterized protein family (UPF0051) ND011_09020 PF00005 ABC transporter ND011_09025 PF01458 Uncharacterized protein family (UPF0051) ND011_09030 PF01521 Iron-sulphur cluster biosynthesis ND011_09035 PF03061 Thioesterase superfamily ND011_09040 PF02913 FAD linked oxidases, C-terminal domain ND011_09040 PF01565 FAD binding domain ND011_09040 PF13183 4Fe-4S dicluster domain ND011_09045 PF01594 AI-2E family transporter ND011_09055 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ND011_09055 PF02896 PEP-utilising enzyme, TIM barrel domain ND011_09055 PF00391 PEP-utilising enzyme, mobile domain ND011_09060 PF03618 Kinase/pyrophosphorylase ND011_09065 PF00793 DAHP synthetase I family ND011_09070 PF10636 Hemin uptake protein hemP ND011_09075 PF07715 TonB-dependent Receptor Plug Domain ND011_09075 PF00593 TonB dependent receptor ND011_09080 PF05171 Haemin-degrading HemS.ChuX domain ND011_09085 PF01497 Periplasmic binding protein ND011_09090 PF01032 FecCD transport family ND011_09095 PF00005 ABC transporter ND011_09100 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ND011_09105 PF03099 Biotin/lipoate A/B protein ligase family ND011_09105 PF10437 Bacterial lipoate protein ligase C-terminus ND011_09110 PF00877 NlpC/P60 family ND011_09120 PF00892 EamA-like transporter family ND011_09125 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ND011_09130 PF01522 Polysaccharide deacetylase ND011_09135 PF01370 NAD dependent epimerase/dehydratase family ND011_09135 PF02911 Formyl transferase, C-terminal domain ND011_09135 PF00551 Formyl transferase ND011_09140 PF00535 Glycosyl transferase family 2 ND011_09145 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND011_09150 PF00005 ABC transporter ND011_09155 PF01032 FecCD transport family ND011_09160 PF00145 C-5 cytosine-specific DNA methylase ND011_09160 PF13411 MerR HTH family regulatory protein ND011_09165 PF09553 Eco47II restriction endonuclease ND011_09200 PF02661 Fic/DOC family ND011_09215 PF05154 TM2 domain ND011_09220 PF00216 Bacterial DNA-binding protein ND011_09225 PF03483 B3/4 domain ND011_09225 PF03484 tRNA synthetase B5 domain ND011_09225 PF03147 Ferredoxin-fold anticodon binding domain ND011_09225 PF01588 Putative tRNA binding domain ND011_09225 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ND011_09230 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ND011_09230 PF01409 tRNA synthetases class II core domain (F) ND011_09235 PF00453 Ribosomal protein L20 ND011_09240 PF01632 Ribosomal protein L35 ND011_09245 PF00707 Translation initiation factor IF-3, C-terminal domain ND011_09245 PF05198 Translation initiation factor IF-3, N-terminal domain ND011_09250 PF03129 Anticodon binding domain ND011_09250 PF02824 TGS domain ND011_09250 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND011_09250 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND011_09280 PF01914 MarC family integral membrane protein ND011_09285 PF01464 Transglycosylase SLT domain ND011_09290 PF01297 Zinc-uptake complex component A periplasmic ND011_09295 PF00005 ABC transporter ND011_09300 PF00950 ABC 3 transport family ND011_09305 PF00950 ABC 3 transport family ND011_09310 PF03881 Fructosamine kinase ND011_09315 PF14002 YniB-like protein ND011_09320 PF13419 Haloacid dehalogenase-like hydrolase ND011_09325 PF04307 LexA-binding, inner membrane-associated putative hydrolase ND011_09330 PF00375 Sodium:dicarboxylate symporter family ND011_09335 PF01510 N-acetylmuramoyl-L-alanine amidase ND011_09340 PF09339 IclR helix-turn-helix domain ND011_09340 PF01614 Bacterial transcriptional regulator ND011_09345 PF07690 Major Facilitator Superfamily ND011_09355 PF01435 Peptidase family M48 ND011_09360 PF11818 C-terminal domain of tail specific protease (DUF3340) ND011_09360 PF00595 PDZ domain ND011_09360 PF03572 Peptidase family S41 ND011_09360 PF17804 Tail specific protease N-terminal domain ND011_09365 PF04352 ProQ/FINO family ND011_09365 PF17516 ProQ C-terminal domain ND011_09370 PF13185 GAF domain ND011_09375 PF04403 Paraquat-inducible protein A ND011_09380 PF02470 MlaD protein ND011_09385 PF00990 Diguanylate cyclase, GGDEF domain ND011_09385 PF00360 Phytochrome region ND011_09385 PF00563 EAL domain ND011_09385 PF01590 GAF domain ND011_09390 PF07351 Protein of unknown function (DUF1480) ND011_09415 PF05643 Putative bacterial lipoprotein (DUF799) ND011_09425 PF03783 Curli production assembly/transport component CsgG ND011_09430 PF10753 Toxin GhoT_OrtT ND011_09450 PF00144 Beta-lactamase ND011_09595 PF00959 Phage lysozyme ND011_09600 PF04971 Bacteriophage P21 holin S ND011_09620 PF07102 Protein of unknown function (DUF1364) ND011_09630 PF05063 MT-A70 ND011_09635 PF01555 DNA methylase ND011_09645 PF17854 FtsK alpha domain ND011_09645 PF01580 FtsK/SpoIIIE family ND011_09645 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND011_09645 PF09397 Ftsk gamma domain ND011_09685 PF00717 Peptidase S24-like ND011_09685 PF01381 Helix-turn-helix ND011_09750 PF07825 Excisionase-like protein ND011_09760 PF10709 Protein of unknown function (DUF2511) ND011_09765 PF05425 Copper resistance protein D ND011_09770 PF04234 CopC domain ND011_09775 PF00210 Ferritin-like domain ND011_09780 PF06440 DNA polymerase III, theta subunit ND011_09785 PF00561 alpha/beta hydrolase fold ND011_09795 PF00326 Prolyl oligopeptidase family ND011_09795 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ND011_09800 PF13995 YebF-like protein ND011_09805 PF04266 ASCH domain ND011_09810 PF07130 YebG protein ND011_09815 PF00271 Helicase conserved C-terminal domain ND011_09815 PF03880 DbpA RNA binding domain ND011_09815 PF00270 DEAD/DEAH box helicase ND011_09820 PF02222 ATP-grasp domain ND011_09825 PF03701 Uncharacterised protein family (UPF0181) ND011_09830 PF04715 Anthranilate synthase component I, N terminal region ND011_09830 PF00425 chorismate binding enzyme ND011_09835 PF00293 NUDIX domain ND011_09840 PF03313 Serine dehydratase alpha chain ND011_09840 PF03315 Serine dehydratase beta chain ND011_09845 PF03471 Transporter associated domain ND011_09845 PF03741 Integral membrane protein TerC family ND011_09850 PF03610 PTS system fructose IIA component ND011_09850 PF03830 PTS system sorbose subfamily IIB component ND011_09855 PF03609 PTS system sorbose-specific iic component ND011_09860 PF03613 PTS system mannose/fructose/sorbose family IID component ND011_09865 PF06173 Protein of unknown function (DUF986) ND011_09870 PF02659 Putative manganese efflux pump ND011_09875 PF02441 Flavoprotein ND011_09890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND011_09890 PF02770 Acyl-CoA dehydrogenase, middle domain ND011_09890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND011_09900 PF00732 GMC oxidoreductase ND011_09900 PF05199 GMC oxidoreductase ND011_09905 PF00501 AMP-binding enzyme ND011_09905 PF13193 AMP-binding enzyme C-terminal domain ND011_09905 PF00668 Condensation domain ND011_09905 PF00550 Phosphopantetheine attachment site ND011_09910 PF07690 Major Facilitator Superfamily ND011_09930 PF13847 Methyltransferase domain ND011_09935 PF00905 Penicillin binding protein transpeptidase domain ND011_09935 PF03717 Penicillin-binding Protein dimerisation domain ND011_09940 PF02578 Multi-copper polyphenol oxidoreductase laccase ND011_09945 PF00313 'Cold-shock' DNA-binding domain ND011_09950 PF10736 Protein of unknown function (DUF2627) ND011_09955 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ND011_09960 PF00324 Amino acid permease ND011_09975 PF13974 YebO-like protein ND011_09980 PF13998 MgrB protein ND011_09985 PF13996 YobH-like protein ND011_09990 PF10964 Protein of unknown function (DUF2766) ND011_09995 PF12833 Helix-turn-helix domain ND011_10010 PF13520 Amino acid permease ND011_10015 PF00664 ABC transporter transmembrane region ND011_10015 PF00005 ABC transporter ND011_10025 PF00563 EAL domain ND011_10025 PF01590 GAF domain ND011_10025 PF00990 Diguanylate cyclase, GGDEF domain ND011_10025 PF00360 Phytochrome region ND011_10030 PF03372 Endonuclease/Exonuclease/phosphatase family ND011_10040 PF06411 HdeA/HdeB family ND011_10045 PF01820 D-ala D-ala ligase N-terminus ND011_10045 PF07478 D-ala D-ala ligase C-terminus ND011_10060 PF08241 Methyltransferase domain ND011_10065 PF00313 'Cold-shock' DNA-binding domain ND011_10070 PF00313 'Cold-shock' DNA-binding domain ND011_10075 PF00313 'Cold-shock' DNA-binding domain ND011_10085 PF04794 YdjC-like protein ND011_10090 PF07883 Cupin domain ND011_10090 PF12833 Helix-turn-helix domain ND011_10095 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ND011_10100 PF00232 Glycosyl hydrolase family 1 ND011_10105 PF02378 Phosphotransferase system, EIIC ND011_10110 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND011_10115 PF00849 RNA pseudouridylate synthase ND011_10115 PF01479 S4 domain ND011_10125 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ND011_10130 PF03553 Na+/H+ antiporter family ND011_10140 PF13520 Amino acid permease ND011_10155 PF00849 RNA pseudouridylate synthase ND011_10160 PF00282 Pyridoxal-dependent decarboxylase conserved domain ND011_10165 PF13520 Amino acid permease ND011_10170 PF04960 Glutaminase ND011_10200 PF13673 Acetyltransferase (GNAT) domain ND011_10210 PF00034 Cytochrome c ND011_10210 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ND011_10220 PF00528 Binding-protein-dependent transport system inner membrane component ND011_10225 PF00005 ABC transporter ND011_10235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND011_10235 PF00672 HAMP domain ND011_10235 PF02203 Tar ligand binding domain homologue ND011_10240 PF13276 HTH-like domain ND011_10240 PF00665 Integrase core domain ND011_10240 PF13333 Integrase core domain ND011_10260 PF01066 CDP-alcohol phosphatidyltransferase ND011_10265 PF02151 UvrB/uvrC motif ND011_10265 PF08459 UvrC Helix-hairpin-helix N-terminal ND011_10265 PF01541 GIY-YIG catalytic domain ND011_10270 PF00196 Bacterial regulatory proteins, luxR family ND011_10270 PF00072 Response regulator receiver domain ND011_10275 PF10769 Protein of unknown function (DUF2594) ND011_10295 PF00324 Amino acid permease ND011_10300 PF01276 Orn/Lys/Arg decarboxylase, major domain ND011_10300 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND011_10300 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND011_10305 PF13520 Amino acid permease ND011_10310 PF18500 CadC C-terminal domain 1 ND011_10310 PF00486 Transcriptional regulatory protein, C terminal ND011_10315 PF00474 Sodium:solute symporter family ND011_10320 PF00171 Aldehyde dehydrogenase family ND011_10320 PF01619 Proline dehydrogenase ND011_10320 PF14850 DNA-binding domain of Proline dehydrogenase ND011_10320 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ND011_10325 PF00005 ABC transporter ND011_10330 PF00528 Binding-protein-dependent transport system inner membrane component ND011_10335 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND011_10340 PF00291 Pyridoxal-phosphate dependent enzyme ND011_10345 PF02899 Phage integrase, N-terminal SAM-like domain ND011_10350 PF04542 Sigma-70 region 2 ND011_10350 PF04545 Sigma-70, region 4 ND011_10350 PF04539 Sigma-70 region 3 ND011_10355 PF00669 Bacterial flagellin N-terminal helical region ND011_10355 PF08884 Flagellin D3 domain ND011_10355 PF00700 Bacterial flagellin C-terminal helical region ND011_10360 PF08884 Flagellin D3 domain ND011_10360 PF00669 Bacterial flagellin N-terminal helical region ND011_10360 PF00700 Bacterial flagellin C-terminal helical region ND011_10365 PF08884 Flagellin D3 domain ND011_10365 PF00700 Bacterial flagellin C-terminal helical region ND011_10365 PF00669 Bacterial flagellin N-terminal helical region ND011_10370 PF07196 Flagellin hook IN motif ND011_10370 PF07195 Flagellar hook-associated protein 2 C-terminus ND011_10370 PF02465 Flagellar hook-associated protein 2 N-terminus ND011_10375 PF02561 Flagellar protein FliS ND011_10380 PF05400 Flagellar protein FliT ND011_10385 PF12833 Helix-turn-helix domain ND011_10390 PF01966 HD domain ND011_10395 PF07885 Ion channel ND011_10395 PF02254 TrkA-N domain ND011_10400 PF01223 DNA/RNA non-specific endonuclease ND011_10410 PF02049 Flagellar hook-basal body complex protein FliE ND011_10415 PF01514 Secretory protein of YscJ/FliF family ND011_10415 PF08345 Flagellar M-ring protein C-terminal ND011_10420 PF01706 FliG C-terminal domain ND011_10420 PF14842 FliG N-terminal domain ND011_10420 PF14841 FliG middle domain ND011_10425 PF02108 Flagellar assembly protein FliH ND011_10430 PF18269 T3SS EscN ATPase C-terminal domain ND011_10430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND011_10435 PF02050 Flagellar FliJ protein ND011_10440 PF02120 Flagellar hook-length control protein FliK ND011_10445 PF03748 Flagellar basal body-associated protein FliL ND011_10450 PF02154 Flagellar motor switch protein FliM ND011_10450 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND011_10455 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND011_10455 PF16973 Flagellar motor switch protein FliN N-terminal ND011_10460 PF04347 Flagellar biosynthesis protein, FliO ND011_10465 PF00813 FliP family ND011_10470 PF01313 Bacterial export proteins, family 3 ND011_10475 PF01311 Bacterial export proteins, family 1 ND011_10480 PF00669 Bacterial flagellin N-terminal helical region ND011_10485 PF00460 Flagella basal body rod protein ND011_10485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND011_10490 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ND011_10490 PF10135 Rod binding protein ND011_10495 PF02119 Flagellar P-ring protein ND011_10500 PF02107 Flagellar L-ring protein ND011_10505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND011_10505 PF00460 Flagella basal body rod protein ND011_10510 PF00460 Flagella basal body rod protein ND011_10510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND011_10515 PF07559 Flagellar basal body protein FlaE ND011_10515 PF00460 Flagella basal body rod protein ND011_10515 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND011_10520 PF03963 Flagellar hook capping protein - N-terminal region ND011_10520 PF13860 FlgD Ig-like domain ND011_10520 PF13861 FlgD Tudor-like domain ND011_10525 PF00460 Flagella basal body rod protein ND011_10525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND011_10530 PF00460 Flagella basal body rod protein ND011_10535 PF17656 FlgA N-terminal domain ND011_10535 PF13144 Chaperone for flagella basal body P-ring formation ND011_10540 PF04316 Anti-sigma-28 factor, FlgM ND011_10545 PF05130 FlgN protein ND011_10550 PF06366 Flagellar protein FlhE ND011_10555 PF00771 FHIPEP family ND011_10560 PF01312 FlhB HrpN YscU SpaS Family ND011_10565 PF01483 Proprotein convertase P-domain ND011_10565 PF00082 Subtilase family ND011_10570 PF00196 Bacterial regulatory proteins, luxR family ND011_10580 PF00419 Fimbrial protein ND011_10585 PF00577 Outer membrane usher protein ND011_10585 PF13954 PapC N-terminal domain ND011_10585 PF13953 PapC C-terminal domain ND011_10590 PF02753 Pili assembly chaperone PapD, C-terminal domain ND011_10590 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND011_10600 PF00419 Fimbrial protein ND011_10630 PF04344 Chemotaxis phosphatase, CheZ ND011_10635 PF00072 Response regulator receiver domain ND011_10640 PF01339 CheB methylesterase ND011_10640 PF00072 Response regulator receiver domain ND011_10645 PF01739 CheR methyltransferase, SAM binding domain ND011_10645 PF03705 CheR methyltransferase, all-alpha domain ND011_10650 PF02203 Tar ligand binding domain homologue ND011_10650 PF00672 HAMP domain ND011_10650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND011_10655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND011_10655 PF00672 HAMP domain ND011_10655 PF02203 Tar ligand binding domain homologue ND011_10660 PF01584 CheW-like domain ND011_10665 PF02895 Signal transducing histidine kinase, homodimeric domain ND011_10665 PF09078 CheY binding ND011_10665 PF01584 CheW-like domain ND011_10665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_10665 PF01627 Hpt domain ND011_10670 PF00691 OmpA family ND011_10670 PF13677 Membrane MotB of proton-channel complex MotA/MotB ND011_10675 PF01618 MotA/TolQ/ExbB proton channel family ND011_10680 PF05280 Flagellar transcriptional activator (FlhC) ND011_10685 PF05247 Flagellar transcriptional activator (FlhD) ND011_10690 PF00582 Universal stress protein family ND011_10695 PF02308 MgtC family ND011_10700 PF02203 Tar ligand binding domain homologue ND011_10700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND011_10700 PF00672 HAMP domain ND011_10705 PF10781 Dextransucrase DSRB ND011_10710 PF00313 'Cold-shock' DNA-binding domain ND011_10720 PF00356 Bacterial regulatory proteins, lacI family ND011_10725 PF16353 Domain of unknown function(DUF4981) ND011_10725 PF00703 Glycosyl hydrolases family 2 ND011_10725 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND011_10725 PF02929 Beta galactosidase small chain ND011_10725 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND011_10730 PF08659 KR domain ND011_10730 PF08240 Alcohol dehydrogenase GroES-like domain ND011_10730 PF00107 Zinc-binding dehydrogenase ND011_10730 PF16197 Ketoacyl-synthetase C-terminal extension ND011_10730 PF00109 Beta-ketoacyl synthase, N-terminal domain ND011_10730 PF02801 Beta-ketoacyl synthase, C-terminal domain ND011_10730 PF00550 Phosphopantetheine attachment site ND011_10730 PF14765 Polyketide synthase dehydratase ND011_10730 PF00698 Acyl transferase domain ND011_10735 PF10777 Inner membrane protein YlaC ND011_10745 PF14001 YdfZ protein ND011_10755 PF06167 Glucose-regulated metallo-peptidase M90 ND011_10765 PF13356 Arm DNA-binding domain ND011_10765 PF00589 Phage integrase family ND011_10780 PF13693 Winged helix-turn-helix DNA-binding ND011_10815 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ND011_10835 PF04335 VirB8 protein ND011_10840 PF03524 Conjugal transfer protein ND011_10845 PF03743 Bacterial conjugation TrbI-like protein ND011_10850 PF00437 Type II/IV secretion system protein ND011_10865 PF08401 Domain of unknown function (DUF1738) ND011_10865 PF18818 Metallopeptidase superfamily domain ND011_10920 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ND011_10920 PF01648 4'-phosphopantetheinyl transferase superfamily ND011_10925 PF00939 Sodium:sulfate symporter transmembrane region ND011_10930 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ND011_10935 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase ND011_10940 PF04223 Citrate lyase, alpha subunit (CitF) ND011_10945 PF03328 HpcH/HpaI aldolase/citrate lyase family ND011_10950 PF06857 Malonate decarboxylase delta subunit (MdcD) ND011_10955 PF08218 Citrate lyase ligase C-terminal domain ND011_10960 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND011_10960 PF17203 Single cache domain 3 ND011_10960 PF00989 PAS fold ND011_10960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_10965 PF12431 Transcriptional regulator ND011_10965 PF00072 Response regulator receiver domain ND011_10970 PF00196 Bacterial regulatory proteins, luxR family ND011_10970 PF00072 Response regulator receiver domain ND011_10975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_10975 PF07730 Histidine kinase ND011_10975 PF05231 MASE1 ND011_10980 PF07690 Major Facilitator Superfamily ND011_10990 PF00528 Binding-protein-dependent transport system inner membrane component ND011_10995 PF00005 ABC transporter ND011_10995 PF08402 TOBE domain ND011_11010 PF04363 Protein of unknown function (DUF496) ND011_11015 PF04632 Fusaric acid resistance protein family ND011_11025 PF08411 Exonuclease C-terminal ND011_11025 PF00929 Exonuclease ND011_11030 PF13520 Amino acid permease ND011_11035 PF07715 TonB-dependent Receptor Plug Domain ND011_11035 PF00593 TonB dependent receptor ND011_11040 PF00005 ABC transporter ND011_11045 PF01032 FecCD transport family ND011_11055 PF00324 Amino acid permease ND011_11060 PF03466 LysR substrate binding domain ND011_11060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_11070 PF03601 Conserved hypothetical protein 698 ND011_11075 PF01261 Xylose isomerase-like TIM barrel ND011_11080 PF02378 Phosphotransferase system, EIIC ND011_11080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND011_11085 PF00294 pfkB family carbohydrate kinase ND011_11090 PF00381 PTS HPr component phosphorylation site ND011_11090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND011_11095 PF00293 NUDIX domain ND011_11100 PF03264 NapC/NirT cytochrome c family, N-terminal region ND011_11105 PF18364 Molybdopterin oxidoreductase N-terminal domain ND011_11105 PF00384 Molybdopterin oxidoreductase ND011_11105 PF01568 Molydopterin dinucleotide binding domain ND011_11110 PF03692 Putative zinc- or iron-chelating domain ND011_11115 PF03222 Tryptophan/tyrosine permease family ND011_11125 PF09285 Elongation factor P, C-terminal ND011_11125 PF01132 Elongation factor P (EF-P) OB domain ND011_11125 PF08207 Elongation factor P (EF-P) KOW-like domain ND011_11130 PF03786 D-mannonate dehydratase (UxuA) ND011_11135 PF08125 Mannitol dehydrogenase C-terminal domain ND011_11135 PF01232 Mannitol dehydrogenase Rossmann domain ND011_11145 PF07683 Cobalamin synthesis protein cobW C-terminal domain ND011_11145 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND011_11150 PF01569 PAP2 superfamily ND011_11155 PF00877 NlpC/P60 family ND011_11160 PF00563 EAL domain ND011_11160 PF12792 CSS motif domain associated with EAL ND011_11165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND011_11170 PF00528 Binding-protein-dependent transport system inner membrane component ND011_11175 PF12911 N-terminal TM domain of oligopeptide transport permease C ND011_11175 PF00528 Binding-protein-dependent transport system inner membrane component ND011_11180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND011_11180 PF00005 ABC transporter ND011_11185 PF13989 YejG-like protein ND011_11190 PF07690 Major Facilitator Superfamily ND011_11195 PF00849 RNA pseudouridylate synthase ND011_11195 PF01479 S4 domain ND011_11200 PF00271 Helicase conserved C-terminal domain ND011_11200 PF04851 Type III restriction enzyme, res subunit ND011_11205 PF01386 Ribosomal L25p family ND011_11210 PF04245 37-kD nucleoid-associated bacterial protein ND011_11215 PF07208 Protein of unknown function (DUF1414) ND011_11220 PF11893 Domain of unknown function (DUF3413) ND011_11220 PF00884 Sulfatase ND011_11235 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND011_11245 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) ND011_11250 PF04865 Baseplate J-like protein ND011_11295 PF17482 Phage tail sheath C-terminal domain ND011_11295 PF04984 Phage tail sheath protein subtilisin-like domain ND011_11345 PF03354 Phage Terminase ND011_11365 PF03245 Bacteriophage Rz lysis protein ND011_11370 PF13539 D-alanyl-D-alanine carboxypeptidase ND011_11400 PF03793 PASTA domain ND011_11400 PF00069 Protein kinase domain ND011_11405 PF01555 DNA methylase ND011_11415 PF06147 Protein of unknown function (DUF968) ND011_11430 PF05869 DNA N-6-adenine-methyltransferase (Dam) ND011_11435 PF03354 Phage Terminase ND011_11470 PF10065 Uncharacterized conserved protein (DUF2303) ND011_11515 PF06183 DinI-like family ND011_11520 PF12706 Beta-lactamase superfamily domain ND011_11525 PF00144 Beta-lactamase ND011_11530 PF13302 Acetyltransferase (GNAT) domain ND011_11545 PF00267 Gram-negative porin ND011_11550 PF07690 Major Facilitator Superfamily ND011_11555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_11555 PF01627 Hpt domain ND011_11555 PF16359 RcsD-ABL domain ND011_11560 PF00196 Bacterial regulatory proteins, luxR family ND011_11560 PF00072 Response regulator receiver domain ND011_11565 PF00072 Response regulator receiver domain ND011_11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_11565 PF00512 His Kinase A (phospho-acceptor) domain ND011_11565 PF09456 RcsC Alpha-Beta-Loop (ABL) ND011_11570 PF03989 DNA gyrase C-terminal domain, beta-propeller ND011_11570 PF00521 DNA gyrase/topoisomerase IV, subunit A ND011_11580 PF03477 ATP cone domain ND011_11580 PF02867 Ribonucleotide reductase, barrel domain ND011_11580 PF00317 Ribonucleotide reductase, all-alpha domain ND011_11585 PF00268 Ribonucleotide reductase, small chain ND011_11590 PF00111 2Fe-2S iron-sulfur cluster binding domain ND011_11600 PF03974 Ecotin ND011_11605 PF00994 Probable molybdopterin binding domain ND011_11610 PF04138 GtrA-like protein ND011_11615 PF00535 Glycosyl transferase family 2 ND011_11625 PF03222 Tryptophan/tyrosine permease family ND011_11630 PF07437 YfaZ precursor ND011_11635 PF00199 Catalase ND011_11635 PF06628 Catalase-related immune-responsive ND011_11640 PF00501 AMP-binding enzyme ND011_11640 PF13193 AMP-binding enzyme C-terminal domain ND011_11645 PF13378 Enolase C-terminal domain-like ND011_11650 PF00378 Enoyl-CoA hydratase/isomerase ND011_11655 PF12697 Alpha/beta hydrolase family ND011_11660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND011_11660 PF16582 Middle domain of thiamine pyrophosphate ND011_11660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND011_11665 PF00425 chorismate binding enzyme ND011_11670 PF05957 Bacterial protein of unknown function (DUF883) ND011_11675 PF06496 Protein of unknown function (DUF1097) ND011_11680 PF00361 Proton-conducting membrane transporter ND011_11685 PF00361 Proton-conducting membrane transporter ND011_11690 PF00361 Proton-conducting membrane transporter ND011_11690 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ND011_11695 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ND011_11700 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ND011_11705 PF12838 4Fe-4S dicluster domain ND011_11710 PF00146 NADH dehydrogenase ND011_11715 PF00384 Molybdopterin oxidoreductase ND011_11715 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND011_11715 PF01568 Molydopterin dinucleotide binding domain ND011_11715 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ND011_11720 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND011_11720 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ND011_11720 PF10531 SLBB domain ND011_11730 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND011_11730 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND011_11735 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND011_11740 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ND011_11745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_11745 PF03466 LysR substrate binding domain ND011_11750 PF00155 Aminotransferase class I and II ND011_11760 PF03600 Citrate transporter ND011_11760 PF02080 TrkA-C domain ND011_11770 PF03887 YfbU domain ND011_11775 PF04217 Protein of unknown function, DUF412 ND011_11780 PF00871 Acetokinase family ND011_11785 PF07085 DRTGG domain ND011_11785 PF01515 Phosphate acetyl/butaryl transferase ND011_11790 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND011_11790 PF00356 Bacterial regulatory proteins, lacI family ND011_11795 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND011_11805 PF03611 PTS system sugar-specific permease component ND011_11810 PF00293 NUDIX domain ND011_11815 PF12850 Calcineurin-like phosphoesterase superfamily domain ND011_11830 PF00043 Glutathione S-transferase, C-terminal domain ND011_11830 PF02798 Glutathione S-transferase, N-terminal domain ND011_11835 PF01370 NAD dependent epimerase/dehydratase family ND011_11835 PF08338 Domain of unknown function (DUF1731) ND011_11840 PF00005 ABC transporter ND011_11845 PF00528 Binding-protein-dependent transport system inner membrane component ND011_11850 PF00528 Binding-protein-dependent transport system inner membrane component ND011_11855 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND011_11865 PF02441 Flavoprotein ND011_11870 PF00156 Phosphoribosyl transferase domain ND011_11875 PF02674 Colicin V production protein ND011_11880 PF05036 Sporulation related domain ND011_11885 PF02875 Mur ligase family, glutamate ligase domain ND011_11885 PF08245 Mur ligase middle domain ND011_11890 PF17848 Acetyl-coA carboxylase zinc finger domain ND011_11890 PF01039 Carboxyl transferase domain ND011_11895 PF09335 SNARE associated Golgi protein ND011_11900 PF01416 tRNA pseudouridine synthase ND011_11905 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND011_11905 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND011_11910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND011_11910 PF11890 Domain of unknown function (DUF3410) ND011_11910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND011_11930 PF00155 Aminotransferase class I and II ND011_11935 PF00578 AhpC/TSA family ND011_11965 PF00109 Beta-ketoacyl synthase, N-terminal domain ND011_11965 PF02801 Beta-ketoacyl synthase, C-terminal domain ND011_11970 PF01266 FAD dependent oxidoreductase ND011_11970 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ND011_11975 PF08891 YfcL protein ND011_11980 PF04315 Elongation factor P hydroxylase ND011_11985 PF01925 Sulfite exporter TauE/SafE ND011_11990 PF03411 Penicillin-insensitive murein endopeptidase ND011_11995 PF01264 Chorismate synthase ND011_12000 PF05175 Methyltransferase small domain ND011_12005 PF01713 Smr domain ND011_12010 PF00300 Histidine phosphatase superfamily (branch 1) ND011_12015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND011_12015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND011_12015 PF00378 Enoyl-CoA hydratase/isomerase ND011_12020 PF00108 Thiolase, N-terminal domain ND011_12020 PF02803 Thiolase, C-terminal domain ND011_12025 PF04175 Protein of unknown function (DUF406) ND011_12030 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ND011_12035 PF04333 MlaA lipoprotein ND011_12040 PF03918 Cytochrome C biogenesis protein ND011_12045 PF03918 Cytochrome C biogenesis protein ND011_12050 PF08534 Redoxin ND011_12055 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ND011_12055 PF01578 Cytochrome C assembly protein ND011_12060 PF03100 CcmE ND011_12065 PF04995 Heme exporter protein D (CcmD) ND011_12070 PF01578 Cytochrome C assembly protein ND011_12075 PF03379 CcmB protein ND011_12080 PF00005 ABC transporter ND011_12090 PF00589 Phage integrase family ND011_12090 PF14659 Phage integrase, N-terminal SAM-like domain ND011_12090 PF13356 Arm DNA-binding domain ND011_12095 PF01119 DNA mismatch repair protein, C-terminal domain ND011_12095 PF08676 MutL C terminal dimerisation domain ND011_12150 PF03831 PhnA domain ND011_12150 PF08274 PhnA Zinc-Ribbon ND011_12155 PF13406 Transglycosylase SLT domain ND011_12170 PF01292 Prokaryotic cytochrome b561 ND011_12175 PF00155 Aminotransferase class I and II ND011_12180 PF07350 Protein of unknown function (DUF1479) ND011_12185 PF07694 5TMR of 5TMR-LYT ND011_12185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_12185 PF06580 Histidine kinase ND011_12190 PF04397 LytTr DNA-binding domain ND011_12190 PF00072 Response regulator receiver domain ND011_12195 PF07690 Major Facilitator Superfamily ND011_12200 PF02685 Glucokinase ND011_12210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_12210 PF03466 LysR substrate binding domain ND011_12220 PF01566 Natural resistance-associated macrophage protein ND011_12225 PF07670 Nucleoside recognition ND011_12225 PF07662 Na+ dependent nucleoside transporter C-terminus ND011_12225 PF01773 Na+ dependent nucleoside transporter N-terminus ND011_12260 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND011_12290 PF12843 Putative quorum-sensing-regulated virulence factor ND011_12295 PF00533 BRCA1 C Terminus (BRCT) domain ND011_12295 PF01653 NAD-dependent DNA ligase adenylation domain ND011_12295 PF03120 NAD-dependent DNA ligase OB-fold domain ND011_12295 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ND011_12295 PF12826 Helix-hairpin-helix motif ND011_12300 PF04354 ZipA, C-terminal FtsZ-binding domain ND011_12310 PF00291 Pyridoxal-phosphate dependent enzyme ND011_12315 PF00381 PTS HPr component phosphorylation site ND011_12320 PF05524 PEP-utilising enzyme, N-terminal ND011_12320 PF00391 PEP-utilising enzyme, mobile domain ND011_12320 PF02896 PEP-utilising enzyme, TIM barrel domain ND011_12325 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND011_12330 PF00291 Pyridoxal-phosphate dependent enzyme ND011_12335 PF00005 ABC transporter ND011_12340 PF00528 Binding-protein-dependent transport system inner membrane component ND011_12345 PF00528 Binding-protein-dependent transport system inner membrane component ND011_12355 PF07690 Major Facilitator Superfamily ND011_12360 PF01418 Helix-turn-helix domain, rpiR family ND011_12360 PF01380 SIS domain ND011_12365 PF04074 YhcH/YjgK/YiaL ND011_12370 PF00480 ROK family ND011_12375 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ND011_12380 PF00701 Dihydrodipicolinate synthetase family ND011_12385 PF04261 Dyp-type peroxidase family ND011_12390 PF06572 Protein of unknown function (DUF1131) ND011_12395 PF04076 Bacterial OB fold (BOF) protein ND011_12445 PF00583 Acetyltransferase (GNAT) family ND011_12450 PF01218 Coproporphyrinogen III oxidase ND011_12455 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ND011_12460 PF00390 Malic enzyme, N-terminal domain ND011_12460 PF01515 Phosphate acetyl/butaryl transferase ND011_12460 PF03949 Malic enzyme, NAD binding domain ND011_12465 PF00293 NUDIX domain ND011_12470 PF03264 NapC/NirT cytochrome c family, N-terminal region ND011_12475 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ND011_12480 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND011_12480 PF00384 Molybdopterin oxidoreductase ND011_12480 PF01568 Molydopterin dinucleotide binding domain ND011_12480 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND011_12485 PF03927 NapD protein ND011_12490 PF13187 4Fe-4S dicluster domain ND011_12490 PF00037 4Fe-4S binding domain ND011_12490 PF12800 4Fe-4S binding domain ND011_12495 PF00196 Bacterial regulatory proteins, luxR family ND011_12495 PF00072 Response regulator receiver domain ND011_12505 PF00873 AcrB/AcrD/AcrF family ND011_12515 PF01817 Chorismate mutase type II ND011_12520 PF03960 ArsC family ND011_12525 PF07687 Peptidase dimerisation domain ND011_12525 PF01546 Peptidase family M20/M25/M40 ND011_12530 PF02557 D-alanyl-D-alanine carboxypeptidase ND011_12535 PF13980 Uncharacterised protein family (UPF0370) ND011_12540 PF02230 Phospholipase/Carboxylesterase ND011_12545 PF17176 tRNA-binding domain ND011_12545 PF05127 Helicase ND011_12545 PF13718 GNAT acetyltransferase 2 ND011_12545 PF08351 Domain of unknown function (DUF1726) ND011_12550 PF04284 Protein of unknown function (DUF441) ND011_12555 PF01259 SAICAR synthetase ND011_12560 PF06804 NlpB/DapX lipoprotein ND011_12565 PF00701 Dihydrodipicolinate synthetase family ND011_12570 PF01842 ACT domain ND011_12575 PF00578 AhpC/TSA family ND011_12580 PF01594 AI-2E family transporter ND011_12585 PF07720 Tetratricopeptide repeat ND011_12585 PF01435 Peptidase family M48 ND011_12590 PF03960 ArsC family ND011_12595 PF00308 Bacterial dnaA protein ND011_12600 PF00860 Permease family ND011_12610 PF02769 AIR synthase related protein, C-terminal domain ND011_12610 PF00586 AIR synthase related protein, N-terminal domain ND011_12615 PF00551 Formyl transferase ND011_12620 PF13302 Acetyltransferase (GNAT) domain ND011_12625 PF00005 ABC transporter ND011_12630 PF00528 Binding-protein-dependent transport system inner membrane component ND011_12635 PF00528 Binding-protein-dependent transport system inner membrane component ND011_12640 PF13090 Polyphosphate kinase C-terminal domain 2 ND011_12640 PF02503 Polyphosphate kinase middle domain ND011_12640 PF17941 Polyphosphate kinase C-terminal domain 1 ND011_12640 PF13089 Polyphosphate kinase N-terminal domain ND011_12645 PF02541 Ppx/GppA phosphatase family ND011_12655 PF00571 CBS domain ND011_12655 PF01769 Divalent cation transporter ND011_12655 PF03448 MgtE intracellular N domain ND011_12660 PF00012 Hsp70 protein ND011_12670 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND011_12670 PF02753 Pili assembly chaperone PapD, C-terminal domain ND011_12675 PF13954 PapC N-terminal domain ND011_12675 PF13953 PapC C-terminal domain ND011_12675 PF00577 Outer membrane usher protein ND011_12690 PF13533 Biotin-lipoyl like ND011_12695 PF00873 AcrB/AcrD/AcrF family ND011_12700 PF00873 AcrB/AcrD/AcrF family ND011_12705 PF07690 Major Facilitator Superfamily ND011_12710 PF00512 His Kinase A (phospho-acceptor) domain ND011_12710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_12710 PF00672 HAMP domain ND011_12715 PF00072 Response regulator receiver domain ND011_12715 PF00486 Transcriptional regulatory protein, C terminal ND011_12720 PF07411 Domain of unknown function (DUF1508) ND011_12725 PF16325 Peptidase family U32 C-terminal domain ND011_12725 PF01136 Peptidase family U32 ND011_12730 PF00781 Diacylglycerol kinase catalytic domain ND011_12745 PF08543 Phosphomethylpyrimidine kinase ND011_12760 PF00117 Glutamine amidotransferase class-I ND011_12760 PF00958 GMP synthase C terminal domain ND011_12760 PF02540 NAD synthase ND011_12765 PF00571 CBS domain ND011_12765 PF00478 IMP dehydrogenase / GMP reductase domain ND011_12770 PF02601 Exonuclease VII, large subunit ND011_12770 PF13742 OB-fold nucleic acid binding domain ND011_12775 PF07191 zinc-ribbons ND011_12780 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ND011_12780 PF01926 50S ribosome-binding GTPase ND011_12785 PF13360 PQQ-like domain ND011_12790 PF09976 Tetratricopeptide repeat-like domain ND011_12795 PF03129 Anticodon binding domain ND011_12795 PF13393 Histidyl-tRNA synthetase ND011_12800 PF04551 GcpE protein ND011_12805 PF13464 Domain of unknown function (DUF4115) ND011_12815 PF04055 Radical SAM superfamily ND011_12820 PF00334 Nucleoside diphosphate kinase ND011_12830 PF06832 Penicillin-Binding Protein C-terminus Family ND011_12830 PF00912 Transglycosylase ND011_12830 PF00905 Penicillin binding protein transpeptidase domain ND011_12835 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ND011_12835 PF07703 Alpha-2-macroglobulin bait region domain ND011_12835 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain ND011_12835 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ND011_12835 PF00207 Alpha-2-macroglobulin family ND011_12835 PF01835 MG2 domain ND011_12835 PF17962 Bacterial macroglobulin domain 6 ND011_12835 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ND011_12835 PF07678 A-macroglobulin TED domain ND011_12840 PF07179 SseB protein N-terminal domain ND011_12840 PF14581 SseB protein C-terminal domain ND011_12845 PF12404 Peptidase ND011_12845 PF00883 Cytosol aminopeptidase family, catalytic domain ND011_12850 PF04384 Iron-sulphur cluster assembly ND011_12855 PF00111 2Fe-2S iron-sulfur cluster binding domain ND011_12860 PF00012 Hsp70 protein ND011_12865 PF00226 DnaJ domain ND011_12865 PF07743 HSCB C-terminal oligomerisation domain ND011_12870 PF01521 Iron-sulphur cluster biosynthesis ND011_12875 PF01592 NifU-like N terminal domain ND011_12880 PF00266 Aminotransferase class-V ND011_12885 PF02082 Transcriptional regulator ND011_12890 PF00588 SpoU rRNA Methylase family ND011_12895 PF00459 Inositol monophosphatase family ND011_12900 PF03824 High-affinity nickel-transport protein ND011_12905 PF06226 Protein of unknown function (DUF1007) ND011_12910 PF00874 PRD domain ND011_12915 PF12832 MFS_1 like family ND011_12920 PF00464 Serine hydroxymethyltransferase ND011_12925 PF00175 Oxidoreductase NAD-binding domain ND011_12925 PF00042 Globin ND011_12925 PF00970 Oxidoreductase FAD-binding domain ND011_12930 PF14503 YhfZ C-terminal domain ND011_12930 PF14502 Helix-turn-helix domain ND011_12940 PF01168 Alanine racemase, N-terminal domain ND011_12945 PF02126 Phosphotriesterase family ND011_12950 PF10941 Protein of unknown function DUF2620 ND011_12955 PF10797 Protein of unknown function ND011_12960 PF00543 Nitrogen regulatory protein P-II ND011_12965 PF00795 Carbon-nitrogen hydrolase ND011_12965 PF02540 NAD synthase ND011_12970 PF00072 Response regulator receiver domain ND011_12970 PF00158 Sigma-54 interaction domain ND011_12975 PF13942 YfhG lipoprotein ND011_12980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_12980 PF00512 His Kinase A (phospho-acceptor) domain ND011_12990 PF02769 AIR synthase related protein, C-terminal domain ND011_12990 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ND011_12990 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ND011_12995 PF01464 Transglycosylase SLT domain ND011_12995 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND011_13000 PF14437 MafB19-like deaminase ND011_13010 PF00367 phosphotransferase system, EIIB ND011_13010 PF02378 Phosphotransferase system, EIIC ND011_13015 PF01380 SIS domain ND011_13020 PF01418 Helix-turn-helix domain, rpiR family ND011_13020 PF01380 SIS domain ND011_13025 PF12838 4Fe-4S dicluster domain ND011_13030 PF01648 4'-phosphopantetheinyl transferase superfamily ND011_13035 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ND011_13040 PF02565 Recombination protein O C terminal ND011_13040 PF11967 Recombination protein O N terminal ND011_13045 PF01926 50S ribosome-binding GTPase ND011_13045 PF07650 KH domain ND011_13050 PF00035 Double-stranded RNA binding motif ND011_13050 PF14622 Ribonuclease-III-like ND011_13055 PF10502 Signal peptidase, peptidase S26 ND011_13060 PF00679 Elongation factor G C-terminus ND011_13060 PF00009 Elongation factor Tu GTP binding domain ND011_13060 PF03144 Elongation factor Tu domain 2 ND011_13060 PF06421 GTP-binding protein LepA C-terminus ND011_13070 PF03888 MucB/RseB N-terminal domain ND011_13070 PF17188 MucB/RseB C-terminal domain ND011_13075 PF03873 Anti sigma-E protein RseA, C-terminal domain ND011_13075 PF03872 Anti sigma-E protein RseA, N-terminal domain ND011_13080 PF04542 Sigma-70 region 2 ND011_13080 PF08281 Sigma-70, region 4 ND011_13085 PF00890 FAD binding domain ND011_13085 PF02910 Fumarate reductase flavoprotein C-term ND011_13090 PF05175 Methyltransferase small domain ND011_13095 PF00270 DEAD/DEAH box helicase ND011_13095 PF00271 Helicase conserved C-terminal domain ND011_13100 PF12796 Ankyrin repeats (3 copies) ND011_13110 PF01228 Glycine radical ND011_13115 PF03167 Uracil DNA glycosylase superfamily ND011_13120 PF01025 GrpE ND011_13125 PF01513 ATP-NAD kinase ND011_13130 PF02463 RecF/RecN/SMC N terminal domain ND011_13135 PF04355 SmpA / OmlA family ND011_13140 PF03658 RnfH family Ubiquitin ND011_13145 PF03364 Polyketide cyclase / dehydrase and lipid transport ND011_13150 PF01668 SmpB protein ND011_13160 PF13356 Arm DNA-binding domain ND011_13160 PF00589 Phage integrase family ND011_13190 PF01926 50S ribosome-binding GTPase ND011_13195 PF08220 DeoR-like helix-turn-helix domain ND011_13195 PF13280 WYL domain ND011_13220 PF06067 Domain of unknown function (DUF932) ND011_13225 PF03230 Antirestriction protein ND011_13230 PF04002 RadC-like JAB domain ND011_13235 PF06174 Protein of unknown function (DUF987) ND011_13240 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A ND011_13245 PF06755 CbtA_toxin of type IV toxin-antitoxin system ND011_13285 PF02753 Pili assembly chaperone PapD, C-terminal domain ND011_13285 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND011_13290 PF13953 PapC C-terminal domain ND011_13290 PF13954 PapC N-terminal domain ND011_13290 PF00577 Outer membrane usher protein ND011_13315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_13315 PF03466 LysR substrate binding domain ND011_13330 PF01527 Transposase ND011_13340 PF18413 Neuraminidase-like domain ND011_13340 PF18413 Neuraminidase-like domain ND011_13340 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND011_13340 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND011_13350 PF12255 Insecticide toxin TcdB middle/C-terminal region ND011_13350 PF12256 Insecticide toxin TcdB middle/N-terminal region ND011_13350 PF03534 Salmonella virulence plasmid 65kDa B protein ND011_13355 PF18807 Tripartite Tc toxins repeat ND011_13355 PF14431 YwqJ-like deaminase ND011_13385 PF00571 CBS domain ND011_13385 PF01380 SIS domain ND011_13390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND011_13390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND011_13400 PF02653 Branched-chain amino acid transport system / permease component ND011_13405 PF00005 ABC transporter ND011_13415 PF00561 alpha/beta hydrolase fold ND011_13420 PF03466 LysR substrate binding domain ND011_13420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_13425 PF02652 L-lactate permease ND011_13430 PF01070 FMN-dependent dehydrogenase ND011_13435 PF06039 Malate:quinone oxidoreductase (Mqo) ND011_13440 PF00313 'Cold-shock' DNA-binding domain ND011_13450 PF06711 Protein of unknown function (DUF1198) ND011_13455 PF09400 Protein of unknown function (DUF2002) ND011_13470 PF07972 NrdI Flavodoxin like ND011_13475 PF02867 Ribonucleotide reductase, barrel domain ND011_13475 PF00317 Ribonucleotide reductase, all-alpha domain ND011_13475 PF08343 Ribonucleotide reductase N-terminal ND011_13480 PF00268 Ribonucleotide reductase, small chain ND011_13485 PF00005 ABC transporter ND011_13485 PF00571 CBS domain ND011_13490 PF00528 Binding-protein-dependent transport system inner membrane component ND011_13495 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND011_13505 PF07690 Major Facilitator Superfamily ND011_13510 PF01047 MarR family ND011_13520 PF00529 HlyD membrane-fusion protein of T1SS ND011_13520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND011_13525 PF07690 Major Facilitator Superfamily ND011_13530 PF00588 SpoU rRNA Methylase family ND011_13530 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND011_13535 PF00085 Thioredoxin ND011_13540 PF03942 DTW domain ND011_13545 PF00583 Acetyltransferase (GNAT) family ND011_13545 PF13380 CoA binding domain ND011_13545 PF13607 Succinyl-CoA ligase like flavodoxin domain ND011_13550 PF13091 PLD-like domain ND011_13555 PF10043 Predicted periplasmic lipoprotein (DUF2279) ND011_13585 PF00005 ABC transporter ND011_13585 PF09383 NIL domain ND011_13590 PF00528 Binding-protein-dependent transport system inner membrane component ND011_13595 PF03180 NLPA lipoprotein ND011_13600 PF16358 RcsF lipoprotein ND011_13605 PF18389 TrmO C-terminal domain ND011_13605 PF01980 tRNA-methyltransferase O ND011_13610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND011_13610 PF04073 Aminoacyl-tRNA editing domain ND011_13610 PF03129 Anticodon binding domain ND011_13615 PF04170 NlpE N-terminal domain ND011_13615 PF17185 NlpE C-terminal OB domain ND011_13620 PF00472 RF-1 domain ND011_13625 PF07152 YaeQ protein ND011_13630 PF06786 Uncharacterised protein family (UPF0253) ND011_13635 PF07073 Modulator of Rho-dependent transcription termination (ROF) ND011_13640 PF00034 Cytochrome c ND011_13645 PF01171 PP-loop family ND011_13645 PF09179 TilS substrate binding domain ND011_13645 PF11734 TilS substrate C-terminal domain ND011_13650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND011_13665 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ND011_13670 PF02811 PHP domain ND011_13670 PF01336 OB-fold nucleic acid binding domain ND011_13670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ND011_13670 PF14579 Helix-hairpin-helix motif ND011_13670 PF07733 Bacterial DNA polymerase III alpha NTPase domain ND011_13675 PF01351 Ribonuclease HII ND011_13680 PF02684 Lipid-A-disaccharide synthetase ND011_13685 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ND011_13685 PF00132 Bacterial transferase hexapeptide (six repeats) ND011_13690 PF07977 FabA-like domain ND011_13695 PF00132 Bacterial transferase hexapeptide (six repeats) ND011_13695 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ND011_13700 PF03938 Outer membrane protein (OmpH-like) ND011_13705 PF01103 Surface antigen ND011_13705 PF07244 Surface antigen variable number repeat ND011_13710 PF17820 PDZ domain ND011_13710 PF02163 Peptidase family M50 ND011_13720 PF01255 Putative undecaprenyl diphosphate synthase ND011_13725 PF13288 DXP reductoisomerase C-terminal domain ND011_13725 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ND011_13725 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ND011_13730 PF01765 Ribosome recycling factor ND011_13735 PF00696 Amino acid kinase family ND011_13740 PF00889 Elongation factor TS ND011_13745 PF00318 Ribosomal protein S2 ND011_13750 PF00557 Metallopeptidase family M24 ND011_13755 PF01842 ACT domain ND011_13755 PF08335 GlnD PII-uridylyltransferase ND011_13755 PF01909 Nucleotidyltransferase domain ND011_13755 PF01966 HD domain ND011_13760 PF14602 Hexapeptide repeat of succinyl-transferase ND011_13760 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ND011_13760 PF00132 Bacterial transferase hexapeptide (six repeats) ND011_13765 PF11944 Protein of unknown function (DUF3461) ND011_13770 PF00258 Flavodoxin ND011_13775 PF00849 RNA pseudouridylate synthase ND011_13780 PF04287 tRNA pseudouridine synthase C ND011_13785 PF07348 Syd protein (SUKH-2) ND011_13790 PF14489 QueF-like protein ND011_13790 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ND011_13795 PF03641 Possible lysine decarboxylase ND011_13795 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ND011_13795 PF11892 Domain of unknown function (DUF3412) ND011_13800 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND011_13800 PF01367 5'-3' exonuclease, C-terminal SAM fold ND011_13805 PF18125 RlmM ferredoxin-like domain ND011_13805 PF01728 FtsJ-like methyltransferase ND011_13810 PF04241 Protein of unknown function (DUF423) ND011_13815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_13815 PF03466 LysR substrate binding domain ND011_13820 PF06004 Bacterial protein of unknown function (DUF903) ND011_13825 PF00266 Aminotransferase class-V ND011_13830 PF02657 Fe-S metabolism associated domain ND011_13835 PF00899 ThiF family ND011_13840 PF06725 3D domain ND011_13840 PF03562 MltA specific insert domain ND011_13860 PF11741 AMIN domain ND011_13860 PF01520 N-acetylmuramoyl-L-alanine amidase ND011_13865 PF00696 Amino acid kinase family ND011_13865 PF00583 Acetyltransferase (GNAT) family ND011_13870 PF13538 UvrD-like helicase C-terminal domain ND011_13875 PF13361 UvrD-like helicase C-terminal domain ND011_13875 PF12705 PD-(D/E)XK nuclease superfamily ND011_13875 PF00580 UvrD/REP helicase N-terminal domain ND011_13880 PF16187 Middle or third domain of peptidase_M16 ND011_13880 PF00675 Insulinase (Peptidase family M16) ND011_13880 PF05193 Peptidase M16 inactive domain ND011_13885 PF17946 RecC C-terminal domain ND011_13890 PF07963 Prokaryotic N-terminal methylation motif ND011_13890 PF12528 Type II secretion prepilin peptidase dependent protein C ND011_13905 PF07963 Prokaryotic N-terminal methylation motif ND011_13905 PF00114 Pilin (bacterial filament) ND011_13910 PF00303 Thymidylate synthase ND011_13915 PF01790 Prolipoprotein diacylglyceryl transferase ND011_13920 PF05524 PEP-utilising enzyme, N-terminal ND011_13920 PF01590 GAF domain ND011_13920 PF00391 PEP-utilising enzyme, mobile domain ND011_13920 PF02896 PEP-utilising enzyme, TIM barrel domain ND011_13925 PF00293 NUDIX domain ND011_13930 PF02976 DNA mismatch repair enzyme MutH ND011_13935 PF03741 Integral membrane protein TerC family ND011_13940 PF00248 Aldo/keto reductase family ND011_13945 PF07690 Major Facilitator Superfamily ND011_13950 PF00501 AMP-binding enzyme ND011_13950 PF13193 AMP-binding enzyme C-terminal domain ND011_13950 PF01553 Acyltransferase ND011_13955 PF00356 Bacterial regulatory proteins, lacI family ND011_13960 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ND011_13960 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND011_13965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_13965 PF03466 LysR substrate binding domain ND011_13970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_13970 PF03466 LysR substrate binding domain ND011_14010 PF07963 Prokaryotic N-terminal methylation motif ND011_14010 PF11612 Type II secretion system (T2SS), protein J ND011_14015 PF07963 Prokaryotic N-terminal methylation motif ND011_14015 PF02501 Type II secretion system (T2SS), protein I ND011_14025 PF08334 Type II secretion system (T2SS), protein G ND011_14025 PF07963 Prokaryotic N-terminal methylation motif ND011_14030 PF00482 Type II secretion system (T2SS), protein F ND011_14035 PF00437 Type II/IV secretion system protein ND011_14040 PF03958 Bacterial type II/III secretion system short domain ND011_14040 PF00263 Bacterial type II and III secretion system protein ND011_14065 PF00005 ABC transporter ND011_14070 PF02405 Permease MlaE ND011_14080 PF00152 tRNA synthetases class II (D, K and N) ND011_14080 PF01336 OB-fold nucleic acid binding domain ND011_14090 PF17768 RecJ OB domain ND011_14090 PF01368 DHH family ND011_14090 PF02272 DHHA1 domain ND011_14095 PF10411 Disulfide bond isomerase protein N-terminus ND011_14095 PF13098 Thioredoxin-like domain ND011_14100 PF00589 Phage integrase family ND011_14100 PF02899 Phage integrase, N-terminal SAM-like domain ND011_14105 PF00258 Flavodoxin ND011_14110 PF07254 Membrane-bound toxin component of toxin-antitoxin system ND011_14115 PF03937 Flavinator of succinate dehydrogenase ND011_14120 PF01571 Aminomethyltransferase folate-binding domain ND011_14125 PF03006 Haemolysin-III related ND011_14135 PF02347 Glycine cleavage system P-protein ND011_14140 PF01597 Glycine cleavage H-protein ND011_14145 PF08669 Glycine cleavage T-protein C-terminal barrel domain ND011_14145 PF01571 Aminomethyltransferase folate-binding domain ND011_14150 PF01494 FAD binding domain ND011_14155 PF01494 FAD binding domain ND011_14160 PF05195 Aminopeptidase P, N-terminal domain ND011_14160 PF00557 Metallopeptidase family M24 ND011_14165 PF03695 Uncharacterised protein family (UPF0149) ND011_14170 PF05164 Cell division protein ZapA ND011_14180 PF01812 5-formyltetrahydrofolate cyclo-ligase family ND011_14185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND011_14185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND011_14185 PF01842 ACT domain ND011_14190 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ND011_14195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_14195 PF03466 LysR substrate binding domain ND011_14200 PF04402 Protein of unknown function (DUF541) ND011_14205 PF01810 LysE type translocator ND011_14210 PF05552 Conserved TM helix ND011_14210 PF00924 Mechanosensitive ion channel ND011_14215 PF01116 Fructose-bisphosphate aldolase class-II ND011_14220 PF00162 Phosphoglycerate kinase ND011_14225 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND011_14225 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND011_14230 PF02779 Transketolase, pyrimidine binding domain ND011_14230 PF02780 Transketolase, C-terminal domain ND011_14230 PF00456 Transketolase, thiamine diphosphate binding domain ND011_14240 PF17944 Arginine decarboxylase C-terminal helical extension ND011_14240 PF17810 Arginine decarboxylase helical bundle domain ND011_14240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND011_14245 PF02773 S-adenosylmethionine synthetase, C-terminal domain ND011_14245 PF02772 S-adenosylmethionine synthetase, central domain ND011_14245 PF00438 S-adenosylmethionine synthetase, N-terminal domain ND011_14255 PF04143 Sulphur transport ND011_14265 PF10263 SprT-like family ND011_14265 PF17283 SprT-like zinc ribbon domain ND011_14270 PF04231 Endonuclease I ND011_14275 PF04452 RNA methyltransferase ND011_14280 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ND011_14280 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ND011_14285 PF02622 Uncharacterized ACR, COG1678 ND011_14290 PF03652 Holliday junction resolvase ND011_14295 PF00795 Carbon-nitrogen hydrolase ND011_14300 PF04371 Porphyromonas-type peptidyl-arginine deiminase ND011_14305 PF00437 Type II/IV secretion system protein ND011_14310 PF01168 Alanine racemase, N-terminal domain ND011_14315 PF14748 Pyrroline-5-carboxylate reductase dimerisation ND011_14315 PF03807 NADP oxidoreductase coenzyme F420-dependent ND011_14320 PF02325 YGGT family ND011_14325 PF02594 Uncharacterised ACR, YggU family COG1872 ND011_14330 PF01725 Ham1 family ND011_14335 PF04055 Radical SAM superfamily ND011_14335 PF06969 HemN C-terminal domain ND011_14340 PF11101 Protein of unknown function (DUF2884) ND011_14345 PF04960 Glutaminase ND011_14350 PF04320 Protein with unknown function (DUF469) ND011_14355 PF02390 Putative methyltransferase ND011_14360 PF10576 Iron-sulfur binding domain of endonuclease III ND011_14360 PF00633 Helix-hairpin-helix motif ND011_14360 PF00730 HhH-GPD superfamily base excision DNA repair protein ND011_14360 PF14815 NUDIX domain ND011_14365 PF04362 Bacterial Fe(2+) trafficking ND011_14370 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ND011_14370 PF01464 Transglycosylase SLT domain ND011_14415 PF00294 pfkB family carbohydrate kinase ND011_14420 PF01228 Glycine radical ND011_14420 PF02901 Pyruvate formate lyase-like ND011_14425 PF00871 Acetokinase family ND011_14430 PF01490 Transmembrane amino acid transporter protein ND011_14435 PF00291 Pyridoxal-phosphate dependent enzyme ND011_14440 PF00501 AMP-binding enzyme ND011_14440 PF13193 AMP-binding enzyme C-terminal domain ND011_14440 PF00668 Condensation domain ND011_14440 PF00550 Phosphopantetheine attachment site ND011_14440 PF00975 Thioesterase domain ND011_14450 PF00857 Isochorismatase family ND011_14450 PF00550 Phosphopantetheine attachment site ND011_14455 PF00501 AMP-binding enzyme ND011_14455 PF13193 AMP-binding enzyme C-terminal domain ND011_14460 PF00425 chorismate binding enzyme ND011_14465 PF01497 Periplasmic binding protein ND011_14470 PF05977 Transmembrane secretion effector ND011_14475 PF01032 FecCD transport family ND011_14480 PF01032 FecCD transport family ND011_14485 PF00005 ABC transporter ND011_14495 PF13193 AMP-binding enzyme C-terminal domain ND011_14495 PF00668 Condensation domain ND011_14495 PF00550 Phosphopantetheine attachment site ND011_14495 PF00975 Thioesterase domain ND011_14495 PF00501 AMP-binding enzyme ND011_14500 PF03621 MbtH-like protein ND011_14505 PF11806 Domain of unknown function (DUF3327) ND011_14505 PF00756 Putative esterase ND011_14510 PF07715 TonB-dependent Receptor Plug Domain ND011_14510 PF00593 TonB dependent receptor ND011_14515 PF08501 Shikimate dehydrogenase substrate binding domain ND011_14540 PF04972 BON domain ND011_14540 PF00263 Bacterial type II and III secretion system protein ND011_14540 PF13629 Pilus formation protein N terminal region ND011_14560 PF00437 Type II/IV secretion system protein ND011_14600 PF02472 Biopolymer transport protein ExbD/TolR ND011_14605 PF01618 MotA/TolQ/ExbB proton channel family ND011_14610 PF01053 Cys/Met metabolism PLP-dependent enzyme ND011_14615 PF09335 SNARE associated Golgi protein ND011_14620 PF06719 AraC-type transcriptional regulator N-terminus ND011_14620 PF12833 Helix-turn-helix domain ND011_14625 PF00465 Iron-containing alcohol dehydrogenase ND011_14630 PF00248 Aldo/keto reductase family ND011_14635 PF11842 Domain of unknown function (DUF3362) ND011_14635 PF04055 Radical SAM superfamily ND011_14635 PF08497 Radical SAM N-terminal ND011_14640 PF07731 Multicopper oxidase ND011_14640 PF07732 Multicopper oxidase ND011_14645 PF01553 Acyltransferase ND011_14650 PF03989 DNA gyrase C-terminal domain, beta-propeller ND011_14650 PF00521 DNA gyrase/topoisomerase IV, subunit A ND011_14655 PF02525 Flavodoxin-like fold ND011_14660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_14660 PF03466 LysR substrate binding domain ND011_14665 PF00204 DNA gyrase B ND011_14665 PF00986 DNA gyrase B subunit, carboxyl terminus ND011_14665 PF01751 Toprim domain ND011_14665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_14670 PF05728 Uncharacterised protein family (UPF0227) ND011_14675 PF00149 Calcineurin-like phosphoesterase ND011_14680 PF06853 Protein of unknown function (DUF1249) ND011_14685 PF00293 NUDIX domain ND011_14690 PF02321 Outer membrane efflux protein ND011_14695 PF06693 Protein of unknown function (DUF1190) ND011_14700 PF03738 Glutathionylspermidine synthase preATP-grasp ND011_14705 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ND011_14710 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ND011_14715 PF04380 Membrane fusogenic activity ND011_14725 PF01467 Cytidylyltransferase-like ND011_14725 PF00294 pfkB family carbohydrate kinase ND011_14730 PF08335 GlnD PII-uridylyltransferase ND011_14730 PF03710 Glutamate-ammonia ligase adenylyltransferase ND011_14735 PF01928 CYTH domain ND011_14740 PF08239 Bacterial SH3 domain ND011_14745 PF12627 Probable RNA and SrmB- binding site of polymerase A ND011_14745 PF01966 HD domain ND011_14745 PF01743 Poly A polymerase head domain ND011_14750 PF02673 Bacitracin resistance protein BacA ND011_14755 PF02152 Dihydroneopterin aldolase ND011_14760 PF02660 Glycerol-3-phosphate acyltransferase ND011_14765 PF00814 Glycoprotease family ND011_14770 PF01165 Ribosomal protein S21 ND011_14775 PF10410 DnaB-helicase binding domain of primase ND011_14775 PF08278 DNA primase DnaG DnaB-binding ND011_14775 PF08275 DNA primase catalytic core, N-terminal domain ND011_14775 PF01807 CHC2 zinc finger ND011_14780 PF04546 Sigma-70, non-essential region ND011_14780 PF00140 Sigma-70 factor, region 1.2 ND011_14780 PF04542 Sigma-70 region 2 ND011_14780 PF04539 Sigma-70 region 3 ND011_14780 PF04545 Sigma-70, region 4 ND011_14780 PF03979 Sigma-70 factor, region 1.1 ND011_14805 PF00106 short chain dehydrogenase ND011_14830 PF08241 Methyltransferase domain ND011_14835 PF00535 Glycosyl transferase family 2 ND011_14870 PF13018 Extended Signal Peptide of Type V secretion system ND011_14870 PF04829 Pre-toxin domain with VENN motif ND011_14870 PF13332 Hemagglutinin repeat ND011_14870 PF05860 haemagglutination activity domain ND011_14875 PF13018 Extended Signal Peptide of Type V secretion system ND011_14875 PF13332 Hemagglutinin repeat ND011_14875 PF05860 haemagglutination activity domain ND011_14875 PF04829 Pre-toxin domain with VENN motif ND011_14885 PF08479 POTRA domain, ShlB-type ND011_14885 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND011_14885 PF17287 POTRA domain ND011_14890 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND011_14890 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND011_14895 PF05175 Methyltransferase small domain ND011_14905 PF01863 Protein of unknown function DUF45 ND011_14910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND011_14915 PF03741 Integral membrane protein TerC family ND011_14920 PF00375 Sodium:dicarboxylate symporter family ND011_14925 PF10688 Bacterial inner membrane protein ND011_14930 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ND011_14930 PF08666 SAF domain ND011_14935 PF01232 Mannitol dehydrogenase Rossmann domain ND011_14935 PF08125 Mannitol dehydrogenase C-terminal domain ND011_14940 PF02614 Glucuronate isomerase ND011_14945 PF07690 Major Facilitator Superfamily ND011_14950 PF00392 Bacterial regulatory proteins, gntR family ND011_14950 PF07729 FCD domain ND011_14960 PF09335 SNARE associated Golgi protein ND011_14965 PF13721 SecD export protein N-terminal TM region ND011_14975 PF05957 Bacterial protein of unknown function (DUF883) ND011_14980 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ND011_14985 PF13997 YqjK-like protein ND011_14990 PF07681 DoxX ND011_14995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_14995 PF03466 LysR substrate binding domain ND011_15000 PF02678 Pirin ND011_15000 PF17954 Quercetinase C-terminal cupin domain ND011_15015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND011_15020 PF04348 LppC putative lipoprotein ND011_15025 PF02021 Uncharacterised protein family UPF0102 ND011_15030 PF13580 SIS domain ND011_15035 PF04972 BON domain ND011_15040 PF00912 Transglycosylase ND011_15050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_15050 PF00512 His Kinase A (phospho-acceptor) domain ND011_15050 PF01627 Hpt domain ND011_15050 PF00989 PAS fold ND011_15050 PF00072 Response regulator receiver domain ND011_15050 PF18415 Histidine kinase receptor ArcB trans-membrane domain ND011_15055 PF04055 Radical SAM superfamily ND011_15055 PF16199 Radical_SAM C-terminal domain ND011_15060 PF04898 Glutamate synthase central domain ND011_15060 PF00310 Glutamine amidotransferases class-II ND011_15060 PF01645 Conserved region in glutamate synthase ND011_15060 PF01493 GXGXG motif ND011_15065 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ND011_15065 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND011_15075 PF04386 Stringent starvation protein B ND011_15080 PF00043 Glutathione S-transferase, C-terminal domain ND011_15080 PF02798 Glutathione S-transferase, N-terminal domain ND011_15085 PF00380 Ribosomal protein S9/S16 ND011_15090 PF00572 Ribosomal protein L13 ND011_15095 PF03969 AFG1-like ATPase ND011_15100 PF06295 Protein of unknown function (DUF1043) ND011_15105 PF00595 PDZ domain ND011_15105 PF13180 PDZ domain ND011_15110 PF13180 PDZ domain ND011_15115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND011_15120 PF01722 BolA-like protein ND011_15125 PF13466 STAS domain ND011_15130 PF05494 MlaC protein ND011_15135 PF02470 MlaD protein ND011_15140 PF02405 Permease MlaE ND011_15145 PF00005 ABC transporter ND011_15150 PF01699 Sodium/calcium exchanger protein ND011_15155 PF01380 SIS domain ND011_15155 PF00571 CBS domain ND011_15165 PF06835 Lipopolysaccharide-assembly, LptC-related ND011_15170 PF03968 OstA-like protein ND011_15175 PF00005 ABC transporter ND011_15175 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND011_15180 PF00309 Sigma-54 factor, Activator interacting domain (AID) ND011_15180 PF04963 Sigma-54 factor, core binding domain ND011_15180 PF04552 Sigma-54, DNA binding domain ND011_15185 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND011_15190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND011_15195 PF03668 P-loop ATPase protein family ND011_15200 PF00381 PTS HPr component phosphorylation site ND011_15205 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND011_15205 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND011_15210 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ND011_15210 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ND011_15215 PF01042 Endoribonuclease L-PSP ND011_15220 PF00128 Alpha amylase, catalytic domain ND011_15220 PF11941 Domain of unknown function (DUF3459) ND011_15225 PF00367 phosphotransferase system, EIIB ND011_15225 PF02378 Phosphotransferase system, EIIC ND011_15230 PF00356 Bacterial regulatory proteins, lacI family ND011_15235 PF00689 Cation transporting ATPase, C-terminus ND011_15235 PF00690 Cation transporter/ATPase, N-terminus ND011_15245 PF01272 Transcription elongation factor, GreA/GreB, C-term ND011_15245 PF14760 Rnk N-terminus ND011_15250 PF07361 Cytochrome b562 ND011_15255 PF01523 Putative modulator of DNA gyrase ND011_15260 PF04751 Protein of unknown function (DUF615) ND011_15265 PF01337 Barstar (barnase inhibitor) ND011_15270 PF00545 ribonuclease ND011_15275 PF00171 Aldehyde dehydrogenase family ND011_15280 PF04632 Fusaric acid resistance protein family ND011_15285 PF13533 Biotin-lipoyl like ND011_15290 PF07869 Protein of unknown function (DUF1656) ND011_15295 PF03466 LysR substrate binding domain ND011_15295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_15300 PF01523 Putative modulator of DNA gyrase ND011_15305 PF00795 Carbon-nitrogen hydrolase ND011_15310 PF13502 AsmA-like C-terminal region ND011_15310 PF13116 Protein of unknown function ND011_15315 PF10150 Ribonuclease E/G family ND011_15315 PF00575 S1 RNA binding domain ND011_15320 PF02545 Maf-like protein ND011_15325 PF04093 rod shape-determining protein MreD ND011_15330 PF04085 rod shape-determining protein MreC ND011_15340 PF00563 EAL domain ND011_15340 PF17157 Gammaproteobacterial periplasmic sensor domain ND011_15340 PF00990 Diguanylate cyclase, GGDEF domain ND011_15345 PF00107 Zinc-binding dehydrogenase ND011_15345 PF08240 Alcohol dehydrogenase GroES-like domain ND011_15350 PF00174 Oxidoreductase molybdopterin binding domain ND011_15355 PF01794 Ferric reductase like transmembrane component ND011_15360 PF01220 Dehydroquinase class II ND011_15365 PF00364 Biotin-requiring enzyme ND011_15370 PF02785 Biotin carboxylase C-terminal domain ND011_15370 PF00289 Biotin carboxylase, N-terminal domain ND011_15370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND011_15375 PF06196 Protein of unknown function (DUF997) ND011_15380 PF00474 Sodium:solute symporter family ND011_15390 PF01207 Dihydrouridine synthase (Dus) ND011_15395 PF02954 Bacterial regulatory protein, Fis family ND011_15405 PF03279 Bacterial lipid A biosynthesis acyltransferase ND011_15410 PF00484 Carbonic anhydrase ND011_15415 PF04172 LrgB-like family ND011_15420 PF03788 LrgA family ND011_15425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_15425 PF03466 LysR substrate binding domain ND011_15430 PF00999 Sodium/hydrogen exchanger family ND011_15435 PF00860 Permease family ND011_15445 PF00436 Single-strand binding protein family ND011_15450 PF17755 UvrA DNA-binding domain ND011_15450 PF17760 UvrA interaction domain ND011_15450 PF00005 ABC transporter ND011_15455 PF04237 YjbR ND011_15460 PF00155 Aminotransferase class I and II ND011_15465 PF00842 Alanine racemase, C-terminal domain ND011_15465 PF01168 Alanine racemase, N-terminal domain ND011_15470 PF00772 DnaB-like helicase N terminal domain ND011_15470 PF03796 DnaB-like helicase C terminal domain ND011_15475 PF08240 Alcohol dehydrogenase GroES-like domain ND011_15475 PF00107 Zinc-binding dehydrogenase ND011_15480 PF09583 Phage shock protein G (Phageshock_PspG) ND011_15485 PF01207 Dihydrouridine synthase (Dus) ND011_15490 PF01475 Ferric uptake regulator family ND011_15495 PF01726 LexA DNA binding domain ND011_15495 PF00717 Peptidase S24-like ND011_15500 PF01219 Prokaryotic diacylglycerol kinase ND011_15505 PF01553 Acyltransferase ND011_15510 PF01040 UbiA prenyltransferase family ND011_15515 PF04345 Chorismate lyase ND011_15520 PF07148 Maltose operon periplasmic protein precursor (MalM) ND011_15525 PF02264 LamB porin ND011_15530 PF00005 ABC transporter ND011_15530 PF17912 MalK OB fold domain ND011_15540 PF01547 Bacterial extracellular solute-binding protein ND011_15545 PF00528 Binding-protein-dependent transport system inner membrane component ND011_15545 PF14785 Maltose transport system permease protein MalF P2 domain ND011_15550 PF00528 Binding-protein-dependent transport system inner membrane component ND011_15555 PF06146 Phosphate-starvation-inducible E ND011_15560 PF00342 Phosphoglucose isomerase ND011_15565 PF00696 Amino acid kinase family ND011_15565 PF01842 ACT domain ND011_15570 PF08479 POTRA domain, ShlB-type ND011_15570 PF17287 POTRA domain ND011_15570 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND011_15575 PF13332 Hemagglutinin repeat ND011_15575 PF05860 haemagglutination activity domain ND011_15580 PF00872 Transposase, Mutator family ND011_15585 PF07979 Intimin C-type lectin domain ND011_15585 PF02369 Bacterial Ig-like domain (group 1) ND011_15585 PF11924 Inverse autotransporter, beta-domain ND011_15585 PF09134 Invasin, domain 3 ND011_15590 PF00872 Transposase, Mutator family ND011_15595 PF09134 Invasin, domain 3 ND011_15595 PF07979 Intimin C-type lectin domain ND011_15595 PF11924 Inverse autotransporter, beta-domain ND011_15595 PF02369 Bacterial Ig-like domain (group 1) ND011_15605 PF04488 Glycosyltransferase sugar-binding region containing DXD motif ND011_15615 PF17862 AAA+ lid domain ND011_15615 PF01434 Peptidase family M41 ND011_15615 PF00004 ATPase family associated with various cellular activities (AAA) ND011_15695 PF03466 LysR substrate binding domain ND011_15695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_15715 PF02310 B12 binding domain ND011_15715 PF02607 B12 binding domain ND011_15715 PF02965 Vitamin B12 dependent methionine synthase, activation domain ND011_15715 PF02574 Homocysteine S-methyltransferase ND011_15715 PF00809 Pterin binding enzyme ND011_15720 PF01614 Bacterial transcriptional regulator ND011_15720 PF09339 IclR helix-turn-helix domain ND011_15725 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ND011_15730 PF00463 Isocitrate lyase family ND011_15735 PF01274 Malate synthase ND011_15740 PF04204 Homoserine O-succinyltransferase ND011_15775 PF01808 AICARFT/IMPCHase bienzyme ND011_15775 PF02142 MGS-like domain ND011_15780 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ND011_15780 PF02843 Phosphoribosylglycinamide synthetase, C domain ND011_15780 PF02844 Phosphoribosylglycinamide synthetase, N domain ND011_15785 PF07356 Protein of unknown function (DUF1481) ND011_15790 PF00216 Bacterial DNA-binding protein ND011_15795 PF04222 Protein of unknown function (DUF416) ND011_15800 PF04493 Endonuclease V ND011_15805 PF01208 Uroporphyrinogen decarboxylase (URO-D) ND011_15810 PF09297 NADH pyrophosphatase zinc ribbon domain ND011_15810 PF00293 NUDIX domain ND011_15815 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ND011_15820 PF13667 ThiC-associated domain ND011_15820 PF01964 Radical SAM ThiC family ND011_15825 PF02581 Thiamine monophosphate synthase ND011_15830 PF00899 ThiF family ND011_15835 PF02597 ThiS family ND011_15840 PF05690 Thiazole biosynthesis protein ThiG ND011_15845 PF06968 Biotin and Thiamin Synthesis associated domain ND011_15845 PF04055 Radical SAM superfamily ND011_15850 PF05000 RNA polymerase Rpb1, domain 4 ND011_15850 PF04998 RNA polymerase Rpb1, domain 5 ND011_15850 PF04997 RNA polymerase Rpb1, domain 1 ND011_15850 PF00623 RNA polymerase Rpb1, domain 2 ND011_15850 PF04983 RNA polymerase Rpb1, domain 3 ND011_15855 PF04563 RNA polymerase beta subunit ND011_15855 PF04561 RNA polymerase Rpb2, domain 2 ND011_15855 PF04565 RNA polymerase Rpb2, domain 3 ND011_15855 PF10385 RNA polymerase beta subunit external 1 domain ND011_15855 PF00562 RNA polymerase Rpb2, domain 6 ND011_15855 PF04560 RNA polymerase Rpb2, domain 7 ND011_15860 PF00542 Ribosomal protein L7/L12 C-terminal domain ND011_15860 PF16320 Ribosomal protein L7/L12 dimerisation domain ND011_15865 PF00466 Ribosomal protein L10 ND011_15870 PF00687 Ribosomal protein L1p/L10e family ND011_15875 PF03946 Ribosomal protein L11, N-terminal domain ND011_15875 PF00298 Ribosomal protein L11, RNA binding domain ND011_15880 PF00467 KOW motif ND011_15880 PF02357 Transcription termination factor nusG ND011_15885 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ND011_15890 PF00009 Elongation factor Tu GTP binding domain ND011_15890 PF03144 Elongation factor Tu domain 2 ND011_15890 PF03143 Elongation factor Tu C-terminal domain ND011_15915 PF00485 Phosphoribulokinase / Uridine kinase family ND011_15920 PF02237 Biotin protein ligase C terminal domain ND011_15920 PF03099 Biotin/lipoate A/B protein ligase family ND011_15920 PF08279 HTH domain ND011_15925 PF01565 FAD binding domain ND011_15925 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ND011_15950 PF12724 Flavodoxin domain ND011_15955 PF02386 Cation transport protein ND011_15960 PF09186 Domain of unknown function (DUF1949) ND011_15960 PF01205 Uncharacterized protein family UPF0029 ND011_15965 PF00557 Metallopeptidase family M24 ND011_15970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND011_15970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND011_15970 PF00378 Enoyl-CoA hydratase/isomerase ND011_15975 PF00108 Thiolase, N-terminal domain ND011_15975 PF02803 Thiolase, C-terminal domain ND011_15980 PF00175 Oxidoreductase NAD-binding domain ND011_15980 PF00970 Oxidoreductase FAD-binding domain ND011_15985 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ND011_15995 PF02357 Transcription termination factor nusG ND011_16000 PF00490 Delta-aminolevulinic acid dehydratase ND011_16005 PF01026 TatD related DNase ND011_16010 PF00902 Sec-independent protein translocase protein (TatC) ND011_16020 PF02416 mttA/Hcf106 family ND011_16025 PF03109 ABC1 family ND011_16030 PF02036 SCP-2 sterol transfer family ND011_16035 PF01209 ubiE/COQ5 methyltransferase family ND011_16040 PF02646 RmuC family ND011_16045 PF09335 SNARE associated Golgi protein ND011_16050 PF02554 Carbon starvation protein CstA ND011_16050 PF13722 5TM C-terminal transporter carbon starvation CstA ND011_16060 PF01048 Phosphorylase superfamily ND011_16065 PF01738 Dienelactone hydrolase family ND011_16070 PF01717 Cobalamin-independent synthase, Catalytic domain ND011_16070 PF08267 Cobalamin-independent synthase, N-terminal domain ND011_16075 PF03466 LysR substrate binding domain ND011_16075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_16080 PF00892 EamA-like transporter family ND011_16090 PF03009 Glycerophosphoryl diester phosphodiesterase family ND011_16095 PF00005 ABC transporter ND011_16095 PF17912 MalK OB fold domain ND011_16100 PF00528 Binding-protein-dependent transport system inner membrane component ND011_16105 PF00528 Binding-protein-dependent transport system inner membrane component ND011_16110 PF13416 Bacterial extracellular solute-binding protein ND011_16145 PF00005 ABC transporter ND011_16150 PF00005 ABC transporter ND011_16150 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND011_16155 PF11862 Domain of unknown function (DUF3382) ND011_16155 PF02653 Branched-chain amino acid transport system / permease component ND011_16160 PF02653 Branched-chain amino acid transport system / permease component ND011_16165 PF13458 Periplasmic binding protein ND011_16170 PF12568 Acetyltransferase (GNAT) domain, PanZ ND011_16175 PF02595 Glycerate kinase family ND011_16180 PF02447 GntP family permease ND011_16185 PF05651 Putative sugar diacid recognition ND011_16185 PF17853 GGDEF-like domain ND011_16185 PF13556 PucR C-terminal helix-turn-helix domain ND011_16190 PF04545 Sigma-70, region 4 ND011_16190 PF00140 Sigma-70 factor, region 1.2 ND011_16190 PF04542 Sigma-70 region 2 ND011_16195 PF02687 FtsX-like permease family ND011_16195 PF18075 FtsX extracellular domain ND011_16200 PF00005 ABC transporter ND011_16205 PF00448 SRP54-type protein, GTPase domain ND011_16205 PF02881 SRP54-type protein, helical bundle domain ND011_16205 PF00448 SRP54-type protein, GTPase domain ND011_16205 PF02881 SRP54-type protein, helical bundle domain ND011_16215 PF06611 Protein of unknown function (DUF1145) ND011_16230 PF07947 YhhN family ND011_16235 PF00403 Heavy-metal-associated domain ND011_16240 PF01206 Sulfurtransferase TusA ND011_16245 PF02592 Putative vitamin uptake transporter ND011_16250 PF08786 DcrB ND011_16255 PF02754 Cysteine-rich domain ND011_16255 PF13183 4Fe-4S dicluster domain ND011_16260 PF00890 FAD binding domain ND011_16265 PF01266 FAD dependent oxidoreductase ND011_16265 PF04324 BFD-like [2Fe-2S] binding domain ND011_16275 PF07690 Major Facilitator Superfamily ND011_16280 PF03009 Glycerophosphoryl diester phosphodiesterase family ND011_16290 PF12146 Serine aminopeptidase, S33 ND011_16295 PF01810 LysE type translocator ND011_16300 PF00270 DEAD/DEAH box helicase ND011_16300 PF00271 Helicase conserved C-terminal domain ND011_16300 PF00570 HRDC domain ND011_16300 PF16124 RecQ zinc-binding ND011_16300 PF09382 RQC domain ND011_16305 PF02253 Phospholipase A1 ND011_16310 PF03061 Thioesterase superfamily ND011_16315 PF00892 EamA-like transporter family ND011_16320 PF01544 CorA-like Mg2+ transporter protein ND011_16330 PF09370 Phosphoenolpyruvate hydrolase-like ND011_16345 PF00580 UvrD/REP helicase N-terminal domain ND011_16345 PF13361 UvrD-like helicase C-terminal domain ND011_16350 PF13419 Haloacid dehalogenase-like hydrolase ND011_16355 PF00589 Phage integrase family ND011_16355 PF02899 Phage integrase, N-terminal SAM-like domain ND011_16360 PF04340 Protein of unknown function, DUF484 ND011_16365 PF01678 Diaminopimelate epimerase ND011_16370 PF13627 Prokaryotic lipoprotein-attachment site ND011_16375 PF01491 Frataxin-like domain ND011_16380 PF01295 Adenylate cyclase, class-I ND011_16380 PF12633 Adenylate cyclase NT domain ND011_16385 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ND011_16385 PF03900 Porphobilinogen deaminase, C-terminal domain ND011_16390 PF02602 Uroporphyrinogen-III synthase HemD ND011_16395 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ND011_16400 PF07219 HemY protein N-terminus ND011_16400 PF07719 Tetratricopeptide repeat ND011_16425 PF00324 Amino acid permease ND011_16430 PF03808 Glycosyl transferase WecB/TagA/CpsF family ND011_16435 PF06899 WzyE protein, O-antigen assembly polymerase ND011_16440 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ND011_16445 PF01943 Polysaccharide biosynthesis protein ND011_16450 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND011_16460 PF00483 Nucleotidyl transferase ND011_16465 PF16363 GDP-mannose 4,6 dehydratase ND011_16470 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND011_16470 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND011_16470 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND011_16475 PF02350 UDP-N-acetylglucosamine 2-epimerase ND011_16480 PF02706 Chain length determinant protein ND011_16485 PF00953 Glycosyl transferase family 4 ND011_16490 PF07497 Rho termination factor, RNA-binding domain ND011_16490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND011_16490 PF07498 Rho termination factor, N-terminal domain ND011_16495 PF00085 Thioredoxin ND011_16500 PF00270 DEAD/DEAH box helicase ND011_16500 PF00271 Helicase conserved C-terminal domain ND011_16505 PF02541 Ppx/GppA phosphatase family ND011_16510 PF00580 UvrD/REP helicase N-terminal domain ND011_16510 PF13361 UvrD-like helicase C-terminal domain ND011_16520 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ND011_16520 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ND011_16525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_16525 PF03466 LysR substrate binding domain ND011_16530 PF18416 N-acetylglucosamine binding protein domain 2 ND011_16530 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND011_16535 PF00585 C-terminal regulatory domain of Threonine dehydratase ND011_16535 PF00291 Pyridoxal-phosphate dependent enzyme ND011_16540 PF00920 Dehydratase family ND011_16545 PF01063 Amino-transferase class IV ND011_16555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND011_16555 PF00205 Thiamine pyrophosphate enzyme, central domain ND011_16555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND011_16560 PF08046 IlvGEDA operon leader peptide ND011_16565 PF01078 Magnesium chelatase, subunit ChlI ND011_16565 PF13335 Magnesium chelatase, subunit ChlI C-terminal ND011_16570 PF04219 Protein of unknown function, DUF ND011_16575 PF03466 LysR substrate binding domain ND011_16575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_16625 PF01177 Asp/Glu/Hydantoin racemase ND011_16630 PF00593 TonB dependent receptor ND011_16630 PF07715 TonB-dependent Receptor Plug Domain ND011_16635 PF05958 tRNA (Uracil-5-)-methyltransferase ND011_16640 PF07226 Protein of unknown function (DUF1422) ND011_16645 PF00440 Bacterial regulatory proteins, tetR family ND011_16650 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND011_16650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND011_16655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_16655 PF03466 LysR substrate binding domain ND011_16660 PF00462 Glutaredoxin ND011_16660 PF08534 Redoxin ND011_16665 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND011_16665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND011_16685 PF00529 HlyD membrane-fusion protein of T1SS ND011_16690 PF00664 ABC transporter transmembrane region ND011_16690 PF00005 ABC transporter ND011_16700 PF07715 TonB-dependent Receptor Plug Domain ND011_16700 PF00593 TonB dependent receptor ND011_16705 PF14698 Argininosuccinate lyase C-terminal ND011_16705 PF00206 Lyase ND011_16710 PF00764 Arginosuccinate synthase ND011_16715 PF00696 Amino acid kinase family ND011_16720 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND011_16720 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND011_16725 PF01546 Peptidase family M20/M25/M40 ND011_16725 PF07687 Peptidase dimerisation domain ND011_16730 PF00311 Phosphoenolpyruvate carboxylase ND011_16740 PF02219 Methylenetetrahydrofolate reductase ND011_16760 PF00742 Homoserine dehydrogenase ND011_16760 PF03447 Homoserine dehydrogenase, NAD binding domain ND011_16760 PF00696 Amino acid kinase family ND011_16765 PF01053 Cys/Met metabolism PLP-dependent enzyme ND011_16770 PF01340 Met Apo-repressor, MetJ ND011_16775 PF01197 Ribosomal protein L31 ND011_16780 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ND011_16780 PF17764 3′ DNA-binding domain (3′BD) ND011_16780 PF00271 Helicase conserved C-terminal domain ND011_16780 PF00270 DEAD/DEAH box helicase ND011_16780 PF18074 Primosomal protein N C-terminal domain ND011_16785 PF00356 Bacterial regulatory proteins, lacI family ND011_16790 PF05036 Sporulation related domain ND011_16795 PF00227 Proteasome subunit ND011_16800 PF10431 C-terminal, D2-small domain, of ClpB protein ND011_16800 PF07724 AAA domain (Cdc48 subfamily) ND011_16800 PF00004 ATPase family associated with various cellular activities (AAA) ND011_16805 PF01040 UbiA prenyltransferase family ND011_16810 PF03737 Aldolase/RraA ND011_16815 PF06005 Cell division protein ZapB ND011_16820 PF00230 Major intrinsic protein ND011_16825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND011_16825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND011_16830 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ND011_16835 PF07690 Major Facilitator Superfamily ND011_16840 PF00175 Oxidoreductase NAD-binding domain ND011_16840 PF00970 Oxidoreductase FAD-binding domain ND011_16845 PF05656 Protein of unknown function (DUF805) ND011_16850 PF07305 Protein of unknown function (DUF1454) ND011_16855 PF00121 Triosephosphate isomerase ND011_16865 PF00365 Phosphofructokinase ND011_16870 PF01545 Cation efflux family ND011_16870 PF16916 Dimerisation domain of Zinc Transporter ND011_16875 PF07813 LTXXQ motif family protein ND011_16880 PF00486 Transcriptional regulatory protein, C terminal ND011_16880 PF00072 Response regulator receiver domain ND011_16885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_16885 PF00672 HAMP domain ND011_16885 PF16527 Two-component sensor protein CpxA, periplasmic domain ND011_16885 PF00512 His Kinase A (phospho-acceptor) domain ND011_16890 PF00588 SpoU rRNA Methylase family ND011_16895 PF06426 Serine acetyltransferase, N-terminal ND011_16895 PF00132 Bacterial transferase hexapeptide (six repeats) ND011_16900 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ND011_16900 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ND011_16905 PF02556 Preprotein translocase subunit SecB ND011_16910 PF00462 Glutaredoxin ND011_16915 PF00581 Rhodanese-like domain ND011_16920 PF01676 Metalloenzyme superfamily ND011_16920 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ND011_16925 PF01551 Peptidase family M23 ND011_16930 PF04748 Divergent polysaccharide deacetylase ND011_16935 PF00107 Zinc-binding dehydrogenase ND011_16935 PF08240 Alcohol dehydrogenase GroES-like domain ND011_16940 PF00155 Aminotransferase class I and II ND011_16945 PF01370 NAD dependent epimerase/dehydratase family ND011_16950 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND011_16955 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND011_16960 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ND011_16965 PF00535 Glycosyl transferase family 2 ND011_16970 PF01467 Cytidylyltransferase-like ND011_16975 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ND011_16975 PF06827 Zinc finger found in FPG and IleRS ND011_16975 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ND011_16980 PF00471 Ribosomal protein L33 ND011_16985 PF00830 Ribosomal L28 family ND011_16990 PF04002 RadC-like JAB domain ND011_16995 PF04127 DNA / pantothenate metabolism flavoprotein ND011_16995 PF02441 Flavoprotein ND011_17000 PF00692 dUTPase ND011_17005 PF00440 Bacterial regulatory proteins, tetR family ND011_17010 PF00156 Phosphoribosyl transferase domain ND011_17015 PF03725 3' exoribonuclease family, domain 2 ND011_17015 PF01138 3' exoribonuclease family, domain 1 ND011_17020 PF03755 YicC-like family, N-terminal region ND011_17020 PF08340 Domain of unknown function (DUF1732) ND011_17030 PF03466 LysR substrate binding domain ND011_17030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND011_17035 PF00990 Diguanylate cyclase, GGDEF domain ND011_17035 PF13426 PAS domain ND011_17035 PF00563 EAL domain ND011_17040 PF00378 Enoyl-CoA hydratase/isomerase ND011_17045 PF01773 Na+ dependent nucleoside transporter N-terminus ND011_17045 PF07662 Na+ dependent nucleoside transporter C-terminus ND011_17045 PF07670 Nucleoside recognition ND011_17055 PF03458 UPF0126 domain ND011_17060 PF01653 NAD-dependent DNA ligase adenylation domain ND011_17060 PF03120 NAD-dependent DNA ligase OB-fold domain ND011_17065 PF00625 Guanylate kinase ND011_17070 PF01192 RNA polymerase Rpb6 ND011_17075 PF02824 TGS domain ND011_17075 PF04607 Region found in RelA / SpoT proteins ND011_17075 PF13291 ACT domain ND011_17080 PF00588 SpoU rRNA Methylase family ND011_17080 PF12105 SpoU, rRNA methylase, C-terminal ND011_17085 PF00270 DEAD/DEAH box helicase ND011_17085 PF17191 RecG wedge domain ND011_17085 PF00271 Helicase conserved C-terminal domain ND011_17090 PF03616 Sodium/glutamate symporter ND011_17095 PF00860 Permease family ND011_17100 PF05170 AsmA family ND011_17105 PF00583 Acetyltransferase (GNAT) family ND011_17105 PF09500 Putative thioesterase (yiiD_Cterm) ND011_17110 PF02580 D-Tyr-tRNA(Tyr) deacylase ND011_17115 PF03631 Virulence factor BrkB ND011_17120 PF13419 Haloacid dehalogenase-like hydrolase ND011_17125 PF00009 Elongation factor Tu GTP binding domain ND011_17125 PF03144 Elongation factor Tu domain 2 ND011_17125 PF00679 Elongation factor G C-terminus ND011_17130 PF00120 Glutamine synthetase, catalytic domain ND011_17130 PF03951 Glutamine synthetase, beta-Grasp domain ND011_17135 PF00989 PAS fold ND011_17135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND011_17135 PF00512 His Kinase A (phospho-acceptor) domain ND011_17140 PF00158 Sigma-54 interaction domain ND011_17140 PF00072 Response regulator receiver domain ND011_17140 PF02954 Bacterial regulatory protein, Fis family ND011_17145 PF04055 Radical SAM superfamily ND011_17145 PF06969 HemN C-terminal domain ND011_17150 PF04220 Der GTPase activator (YihI) ND011_17155 PF01926 50S ribosome-binding GTPase ND011_17160 PF01612 3'-5' exonuclease ND011_17160 PF00476 DNA polymerase family A ND011_17160 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND011_17160 PF01367 5'-3' exonuclease, C-terminal SAM fold ND011_17165 PF01323 DSBA-like thioredoxin domain ND011_17170 PF01636 Phosphotransferase enzyme family ND011_17175 PF06288 Protein of unknown function (DUF1040) ND011_17180 PF12804 MobA-like NTP transferase domain ND011_17185 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ND011_17210 PF00392 Bacterial regulatory proteins, gntR family ND011_17210 PF07729 FCD domain ND011_17215 PF00356 Bacterial regulatory proteins, lacI family ND011_17220 PF00294 pfkB family carbohydrate kinase ND011_17225 PF13407 Periplasmic binding protein domain ND011_17230 PF02653 Branched-chain amino acid transport system / permease component ND011_17235 PF00005 ABC transporter ND011_17240 PF05025 RbsD / FucU transport protein family ND011_17245 PF02705 K+ potassium transporter ND011_17250 PF17868 AAA lid domain ND011_17250 PF12592 Protein of unknown function (DUF3763) ND011_17250 PF07728 AAA domain (dynein-related subfamily) ND011_17255 PF05762 VWA domain containing CoxE-like protein ND011_17265 PF03590 Aspartate-ammonia ligase ND011_17270 PF01037 Lrp/AsnC ligand binding domain ND011_17275 PF00258 Flavodoxin ND011_17280 PF13932 GidA associated domain ND011_17280 PF01134 Glucose inhibited division protein A ND011_17285 PF02527 rRNA small subunit methyltransferase G ND011_17290 PF03899 ATP synthase I chain ND011_17295 PF00119 ATP synthase A chain ND011_17300 PF00137 ATP synthase subunit C ND011_17305 PF00430 ATP synthase B/B' CF(0) ND011_17310 PF00213 ATP synthase delta (OSCP) subunit ND011_17315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND011_17315 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND011_17315 PF00306 ATP synthase alpha/beta chain, C terminal domain ND011_17320 PF00231 ATP synthase ND011_17325 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND011_17325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND011_17330 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ND011_17330 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ND011_17335 PF12804 MobA-like NTP transferase domain ND011_17335 PF00132 Bacterial transferase hexapeptide (six repeats) ND011_17340 PF01380 SIS domain ND011_17345 PF12849 PBP superfamily domain ND011_17350 PF00528 Binding-protein-dependent transport system inner membrane component ND011_17355 PF00528 Binding-protein-dependent transport system inner membrane component ND011_17360 PF00005 ABC transporter ND011_17365 PF01895 PhoU domain ND011_17370 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND011_17375 PF00528 Binding-protein-dependent transport system inner membrane component ND011_17380 PF00528 Binding-protein-dependent transport system inner membrane component ND011_17385 PF00860 Permease family ND011_17390 PF00672 HAMP domain ND011_17390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND011_17390 PF02203 Tar ligand binding domain homologue ND011_17400 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND011_17400 PF02753 Pili assembly chaperone PapD, C-terminal domain ND011_17405 PF00577 Outer membrane usher protein ND011_17405 PF13953 PapC C-terminal domain ND011_17405 PF13954 PapC N-terminal domain ND011_17415 PF01926 50S ribosome-binding GTPase ND011_17415 PF10396 GTP-binding protein TrmE N-terminus ND011_17415 PF12631 MnmE helical domain ND011_17420 PF14849 YidC periplasmic domain ND011_17420 PF02096 60Kd inner membrane protein ND011_17425 PF01809 Putative membrane protein insertion efficiency factor ND011_17430 PF00825 Ribonuclease P ND011_17435 PF00468 Ribosomal protein L34 ND011_17490 PF04984 Phage tail sheath protein subtilisin-like domain ND011_17490 PF17482 Phage tail sheath C-terminal domain ND011_17515 PF10124 Mu-like prophage major head subunit gpT ND011_17540 PF06074 Protein of unknown function (DUF935) ND011_17595 PF06252 Protein of unknown function (DUF1018) ND011_17660 PF13693 Winged helix-turn-helix DNA-binding ND011_17685 PF00437 Type II/IV secretion system protein ND011_17695 PF08401 Domain of unknown function (DUF1738) ND011_17695 PF13362 Toprim domain ND011_17695 PF18818 Metallopeptidase superfamily domain ND011_17800 PF18821 Large polyvalent protein-associated domain 7 ND011_17800 PF03432 Relaxase/Mobilisation nuclease domain ND011_17825 PF01381 Helix-turn-helix ND011_17890 PF06406 StbA protein ND011_17895 PF13614 AAA domain ND011_17905 PF02796 Helix-turn-helix domain of resolvase ND011_17905 PF00239 Resolvase, N terminal domain ND011_17920 PF13610 DDE domain ND011_17925 PF00239 Resolvase, N terminal domain ND011_17925 PF02796 Helix-turn-helix domain of resolvase ND011_17930 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ND011_17935 PF13610 DDE domain ND011_17950 PF00756 Putative esterase ND011_17960 PF08240 Alcohol dehydrogenase GroES-like domain ND011_17960 PF00107 Zinc-binding dehydrogenase ND011_17965 PF02583 Metal-sensitive transcriptional repressor ND011_17970 PF00465 Iron-containing alcohol dehydrogenase ND011_17990 PF02796 Helix-turn-helix domain of resolvase ND011_17990 PF00239 Resolvase, N terminal domain ND011_18075 PF00437 Type II/IV secretion system protein ND011_18090 PF01464 Transglycosylase SLT domain ND011_18100 PF04917 Bacterial shufflon protein, N-terminal constant region ND011_18105 PF00239 Resolvase, N terminal domain ND011_18105 PF02796 Helix-turn-helix domain of resolvase ND011_18110 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND011_18115 PF02413 Caudovirales tail fibre assembly protein, lambda gpK