locus-tag class description ND442_00005 PF00308 Bacterial dnaA protein ND442_00005 PF08299 Bacterial dnaA protein helix-turn-helix ND442_00005 PF11638 DnaA N-terminal domain ND442_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ND442_00010 PF02767 DNA polymerase III beta subunit, central domain ND442_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ND442_00015 PF02463 RecF/RecN/SMC N terminal domain ND442_00020 PF01751 Toprim domain ND442_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ND442_00020 PF00204 DNA gyrase B ND442_00020 PF18053 DNA gyrase B subunit insert domain ND442_00030 PF12566 Protein of unknown function (DUF3748) ND442_00030 PF07676 WD40-like Beta Propeller Repeat ND442_00035 PF07119 Protein of unknown function (DUF1375) ND442_00040 PF00011 Hsp20/alpha crystallin family ND442_00045 PF00011 Hsp20/alpha crystallin family ND442_00050 PF02080 TrkA-C domain ND442_00050 PF06826 Predicted Permease Membrane Region ND442_00055 PF00155 Aminotransferase class I and II ND442_00060 PF13488 Glycine zipper ND442_00060 PF00691 OmpA family ND442_00080 PF03352 Methyladenine glycosylase ND442_00090 PF02091 Glycyl-tRNA synthetase alpha subunit ND442_00095 PF05746 DALR anticodon binding domain ND442_00095 PF02092 Glycyl-tRNA synthetase beta subunit ND442_00100 PF11254 Protein of unknown function (DUF3053) ND442_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND442_00130 PF02378 Phosphotransferase system, EIIC ND442_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND442_00135 PF01232 Mannitol dehydrogenase Rossmann domain ND442_00135 PF08125 Mannitol dehydrogenase C-terminal domain ND442_00140 PF05068 Mannitol repressor ND442_00145 PF10928 Protein of unknown function (DUF2810) ND442_00150 PF03473 MOSC domain ND442_00150 PF03475 3-alpha domain ND442_00155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND442_00155 PF02203 Tar ligand binding domain homologue ND442_00155 PF00672 HAMP domain ND442_00160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND442_00160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND442_00165 PF02634 FdhD/NarQ family ND442_00175 PF09163 Formate dehydrogenase N, transmembrane ND442_00175 PF13247 4Fe-4S dicluster domain ND442_00180 PF01292 Prokaryotic cytochrome b561 ND442_00185 PF04216 Protein involved in formate dehydrogenase formation ND442_00190 PF12390 Selenocysteine synthase N terminal ND442_00190 PF03841 L-seryl-tRNA selenium transferase ND442_00195 PF03144 Elongation factor Tu domain 2 ND442_00195 PF09106 Elongation factor SelB, winged helix ND442_00195 PF09107 Elongation factor SelB, winged helix ND442_00195 PF00009 Elongation factor Tu GTP binding domain ND442_00200 PF01427 D-ala-D-ala dipeptidase ND442_00205 PF07690 Major Facilitator Superfamily ND442_00210 PF01757 Acyltransferase family ND442_00220 PF13356 Arm DNA-binding domain ND442_00220 PF14659 Phage integrase, N-terminal SAM-like domain ND442_00220 PF00589 Phage integrase family ND442_00230 PF04606 Ogr/Delta-like zinc finger ND442_00255 PF01175 Urocanase Rossmann-like domain ND442_00255 PF17392 Urocanase C-terminal domain ND442_00255 PF17391 Urocanase N-terminal domain ND442_00260 PF00221 Aromatic amino acid lyase ND442_00265 PF00324 Amino acid permease ND442_00275 PF12146 Serine aminopeptidase, S33 ND442_00280 PF08019 Phosphoethanolamine transferase EptA/EptB ND442_00280 PF00884 Sulfatase ND442_00285 PF00196 Bacterial regulatory proteins, luxR family ND442_00285 PF00072 Response regulator receiver domain ND442_00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_00290 PF07730 Histidine kinase ND442_00290 PF05231 MASE1 ND442_00295 PF07690 Major Facilitator Superfamily ND442_00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND442_00310 PF00528 Binding-protein-dependent transport system inner membrane component ND442_00315 PF00528 Binding-protein-dependent transport system inner membrane component ND442_00315 PF12911 N-terminal TM domain of oligopeptide transport permease C ND442_00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND442_00320 PF00005 ABC transporter ND442_00325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND442_00325 PF00005 ABC transporter ND442_00330 PF11658 Cellulose biosynthesis protein BcsG ND442_00335 PF11120 Cellulose biosynthesis protein BcsF ND442_00340 PF10995 Cellulose biosynthesis GIL ND442_00350 PF06564 Cellulose biosynthesis protein BcsQ ND442_00355 PF03552 Cellulose synthase ND442_00355 PF00535 Glycosyl transferase family 2 ND442_00355 PF07238 PilZ domain ND442_00360 PF03170 Bacterial cellulose synthase subunit ND442_00365 PF01270 Glycosyl hydrolases family 8 ND442_00370 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ND442_00375 PF17154 Gammaproteobacterial periplasmic sensor domain ND442_00375 PF00672 HAMP domain ND442_00375 PF00990 Diguanylate cyclase, GGDEF domain ND442_00375 PF00563 EAL domain ND442_00380 PF00375 Sodium:dicarboxylate symporter family ND442_00385 PF00675 Insulinase (Peptidase family M16) ND442_00385 PF05193 Peptidase M16 inactive domain ND442_00390 PF00294 pfkB family carbohydrate kinase ND442_00395 PF01361 Tautomerase enzyme ND442_00400 PF00563 EAL domain ND442_00405 PF02611 CDP-diacylglycerol pyrophosphatase ND442_00410 PF03631 Virulence factor BrkB ND442_00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_00415 PF03466 LysR substrate binding domain ND442_00420 PF00375 Sodium:dicarboxylate symporter family ND442_00425 PF01053 Cys/Met metabolism PLP-dependent enzyme ND442_00435 PF02369 Bacterial Ig-like domain (group 1) ND442_00435 PF11924 Inverse autotransporter, beta-domain ND442_00435 PF07979 Intimin C-type lectin domain ND442_00435 PF09134 Invasin, domain 3 ND442_00440 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND442_00440 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND442_00445 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ND442_00450 PF01432 Peptidase family M3 ND442_00455 PF04445 Putative SAM-dependent methyltransferase ND442_00460 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ND442_00460 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ND442_00465 PF00582 Universal stress protein family ND442_00470 PF10625 Universal stress protein B (UspB) ND442_00475 PF01384 Phosphate transporter family ND442_00485 PF01810 LysE type translocator ND442_00490 PF00583 Acetyltransferase (GNAT) family ND442_00500 PF02678 Pirin ND442_00500 PF17954 Quercetinase C-terminal cupin domain ND442_00505 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND442_00505 PF00356 Bacterial regulatory proteins, lacI family ND442_00510 PF02447 GntP family permease ND442_00515 PF01202 Shikimate kinase ND442_00520 PF01914 MarC family integral membrane protein ND442_00525 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND442_00525 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND442_00530 PF06580 Histidine kinase ND442_00530 PF07694 5TMR of 5TMR-LYT ND442_00535 PF00128 Alpha amylase, catalytic domain ND442_00535 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND442_00535 PF02806 Alpha amylase, C-terminal all-beta domain ND442_00540 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND442_00540 PF18390 Glycogen debranching enzyme C-terminal domain ND442_00540 PF00128 Alpha amylase, catalytic domain ND442_00545 PF00483 Nucleotidyl transferase ND442_00550 PF08323 Starch synthase catalytic domain ND442_00550 PF00534 Glycosyl transferases group 1 ND442_00555 PF00343 Carbohydrate phosphorylase ND442_00560 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ND442_00560 PF01266 FAD dependent oxidoreductase ND442_00565 PF00455 DeoR C terminal sensor domain ND442_00565 PF08220 DeoR-like helix-turn-helix domain ND442_00570 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ND442_00570 PF01694 Rhomboid family ND442_00575 PF00581 Rhodanese-like domain ND442_00580 PF17874 MalT-like TPR region ND442_00580 PF00196 Bacterial regulatory proteins, luxR family ND442_00585 PF00343 Carbohydrate phosphorylase ND442_00590 PF02446 4-alpha-glucanotransferase ND442_00595 PF01106 NifU-like domain ND442_00595 PF01521 Iron-sulphur cluster biosynthesis ND442_00600 PF00156 Phosphoribosyl transferase domain ND442_00605 PF00561 alpha/beta hydrolase fold ND442_00615 PF09012 FeoC like transcriptional regulator ND442_00620 PF02421 Ferrous iron transport protein B ND442_00620 PF07664 Ferrous iron transport protein B C terminus ND442_00620 PF07670 Nucleoside recognition ND442_00620 PF17910 FeoB cytosolic helical domain ND442_00625 PF04023 FeoA domain ND442_00630 PF17674 HHH domain ND442_00630 PF00575 S1 RNA binding domain ND442_00630 PF09371 Tex-like protein N-terminal domain ND442_00630 PF16921 Tex protein YqgF-like domain ND442_00655 PF01272 Transcription elongation factor, GreA/GreB, C-term ND442_00655 PF03449 Transcription elongation factor, N-terminal ND442_00660 PF00486 Transcriptional regulatory protein, C terminal ND442_00660 PF00072 Response regulator receiver domain ND442_00665 PF00512 His Kinase A (phospho-acceptor) domain ND442_00665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_00665 PF00672 HAMP domain ND442_00670 PF01293 Phosphoenolpyruvate carboxykinase ND442_00675 PF01430 Hsp33 protein ND442_00680 PF01479 S4 domain ND442_00685 PF13419 Haloacid dehalogenase-like hydrolase ND442_00690 PF07095 Intracellular growth attenuator protein IgaA ND442_00695 PF00293 NUDIX domain ND442_00700 PF00905 Penicillin binding protein transpeptidase domain ND442_00700 PF00912 Transglycosylase ND442_00700 PF17092 Penicillin-binding protein OB-like domain ND442_00725 PF03958 Bacterial type II/III secretion system short domain ND442_00725 PF00263 Bacterial type II and III secretion system protein ND442_00730 PF01202 Shikimate kinase ND442_00735 PF01761 3-dehydroquinate synthase ND442_00740 PF05036 Sporulation related domain ND442_00745 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND442_00750 PF00834 Ribulose-phosphate 3 epimerase family ND442_00755 PF13419 Haloacid dehalogenase-like hydrolase ND442_00760 PF00579 tRNA synthetases class I (W and Y) ND442_00765 PF10414 Sirohaem synthase dimerisation region ND442_00765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND442_00765 PF14824 Sirohaem biosynthesis protein central ND442_00770 PF01226 Formate/nitrite transporter ND442_00775 PF13806 Rieske-like [2Fe-2S] domain ND442_00780 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND442_00780 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND442_00780 PF18267 Rubredoxin NAD+ reductase C-terminal domain ND442_00780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND442_00780 PF04324 BFD-like [2Fe-2S] binding domain ND442_00785 PF07969 Amidohydrolase family ND442_00790 PF07690 Major Facilitator Superfamily ND442_00805 PF00356 Bacterial regulatory proteins, lacI family ND442_00810 PF02056 Family 4 glycosyl hydrolase ND442_00810 PF11975 Family 4 glycosyl hydrolase C-terminal domain ND442_00815 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND442_00820 PF00117 Glutamine amidotransferase class-I ND442_00825 PF00202 Aminotransferase class-III ND442_00830 PF12805 FUSC-like inner membrane protein yccS ND442_00835 PF00027 Cyclic nucleotide-binding domain ND442_00835 PF13545 Crp-like helix-turn-helix domain ND442_00840 PF02566 OsmC-like protein ND442_00860 PF00156 Phosphoribosyl transferase domain ND442_00865 PF00291 Pyridoxal-phosphate dependent enzyme ND442_00870 PF00485 Phosphoribulokinase / Uridine kinase family ND442_00875 PF06794 Uncharacterised protein family (UPF0270) ND442_00880 PF00561 alpha/beta hydrolase fold ND442_00885 PF01810 LysE type translocator ND442_00890 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND442_00895 PF00535 Glycosyl transferase family 2 ND442_00900 PF00005 ABC transporter ND442_00900 PF12848 ABC transporter ND442_00905 PF02525 Flavodoxin-like fold ND442_00910 PF00999 Sodium/hydrogen exchanger family ND442_00910 PF02254 TrkA-N domain ND442_00915 PF09526 Probable metal-binding protein (DUF2387) ND442_00920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND442_00925 PF04102 SlyX ND442_00930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND442_00930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND442_00935 PF13309 HTH domain ND442_00935 PF08348 YheO-like PAS domain ND442_00940 PF02635 DsrE/DsrF-like family ND442_00945 PF02635 DsrE/DsrF-like family ND442_00950 PF04077 DsrH like protein ND442_00955 PF00164 Ribosomal protein S12/S23 ND442_00960 PF00177 Ribosomal protein S7p/S5e ND442_00965 PF00679 Elongation factor G C-terminus ND442_00965 PF14492 Elongation Factor G, domain II ND442_00965 PF03764 Elongation factor G, domain IV ND442_00965 PF00009 Elongation factor Tu GTP binding domain ND442_00965 PF03144 Elongation factor Tu domain 2 ND442_00970 PF00009 Elongation factor Tu GTP binding domain ND442_00970 PF03144 Elongation factor Tu domain 2 ND442_00970 PF03143 Elongation factor Tu C-terminal domain ND442_00975 PF04324 BFD-like [2Fe-2S] binding domain ND442_00980 PF00210 Ferritin-like domain ND442_00985 PF00338 Ribosomal protein S10p/S20e ND442_00990 PF00297 Ribosomal protein L3 ND442_00995 PF00573 Ribosomal protein L4/L1 family ND442_01000 PF00276 Ribosomal protein L23 ND442_01005 PF00181 Ribosomal Proteins L2, RNA binding domain ND442_01005 PF03947 Ribosomal Proteins L2, C-terminal domain ND442_01010 PF00203 Ribosomal protein S19 ND442_01015 PF00237 Ribosomal protein L22p/L17e ND442_01020 PF07650 KH domain ND442_01020 PF00189 Ribosomal protein S3, C-terminal domain ND442_01025 PF00252 Ribosomal protein L16p/L10e ND442_01030 PF00831 Ribosomal L29 protein ND442_01035 PF00366 Ribosomal protein S17 ND442_01040 PF00238 Ribosomal protein L14p/L23e ND442_01045 PF00467 KOW motif ND442_01045 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ND442_01050 PF00281 Ribosomal protein L5 ND442_01050 PF00673 ribosomal L5P family C-terminus ND442_01055 PF00253 Ribosomal protein S14p/S29e ND442_01060 PF00410 Ribosomal protein S8 ND442_01065 PF00347 Ribosomal protein L6 ND442_01070 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ND442_01075 PF00333 Ribosomal protein S5, N-terminal domain ND442_01075 PF03719 Ribosomal protein S5, C-terminal domain ND442_01080 PF00327 Ribosomal protein L30p/L7e ND442_01085 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ND442_01090 PF00344 SecY translocase ND442_01095 PF00444 Ribosomal protein L36 ND442_01100 PF00416 Ribosomal protein S13/S18 ND442_01105 PF00411 Ribosomal protein S11 ND442_01110 PF01479 S4 domain ND442_01110 PF00163 Ribosomal protein S4/S9 N-terminal domain ND442_01115 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ND442_01115 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ND442_01115 PF01000 RNA polymerase Rpb3/RpoA insert domain ND442_01120 PF01196 Ribosomal protein L17 ND442_01125 PF13411 MerR HTH family regulatory protein ND442_01130 PF03889 Alternative ribosome-rescue factor A ND442_01135 PF01741 Large-conductance mechanosensitive channel, MscL ND442_01140 PF02080 TrkA-C domain ND442_01140 PF02254 TrkA-N domain ND442_01145 PF01189 16S rRNA methyltransferase RsmB/F ND442_01145 PF01029 NusB family ND442_01150 PF02911 Formyl transferase, C-terminal domain ND442_01150 PF00551 Formyl transferase ND442_01155 PF01327 Polypeptide deformylase ND442_01160 PF02481 DNA recombination-mediator protein A ND442_01160 PF17782 DprA winged helix domain ND442_01165 PF04361 Protein of unknown function (DUF494) ND442_01170 PF01396 Topoisomerase DNA binding C4 zinc finger ND442_01175 PF01300 Telomere recombination ND442_01180 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ND442_01180 PF01488 Shikimate / quinate 5-dehydrogenase ND442_01180 PF08501 Shikimate dehydrogenase substrate binding domain ND442_01185 PF00132 Bacterial transferase hexapeptide (six repeats) ND442_01215 PF00474 Sodium:solute symporter family ND442_01220 PF04341 Protein of unknown function, DUF485 ND442_01225 PF16177 Acetyl-coenzyme A synthetase N-terminus ND442_01225 PF00501 AMP-binding enzyme ND442_01225 PF13193 AMP-binding enzyme C-terminal domain ND442_01230 PF00375 Sodium:dicarboxylate symporter family ND442_01240 PF04143 Sulphur transport ND442_01245 PF01206 Sulfurtransferase TusA ND442_01250 PF02719 Polysaccharide biosynthesis protein ND442_01255 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND442_01260 PF02350 UDP-N-acetylglucosamine 2-epimerase ND442_01265 PF08666 SAF domain ND442_01265 PF03102 NeuB family ND442_01275 PF00483 Nucleotidyl transferase ND442_01285 PF02348 Cytidylyltransferase ND442_01285 PF13472 GDSL-like Lipase/Acylhydrolase family ND442_01310 PF00795 Carbon-nitrogen hydrolase ND442_01310 PF02540 NAD synthase ND442_01315 PF00117 Glutamine amidotransferase class-I ND442_01320 PF00977 Histidine biosynthesis protein ND442_01325 PF08485 Polysaccharide biosynthesis protein C-terminal ND442_01325 PF02719 Polysaccharide biosynthesis protein ND442_01330 PF01370 NAD dependent epimerase/dehydratase family ND442_01335 PF02350 UDP-N-acetylglucosamine 2-epimerase ND442_01360 PF11412 Disulphide bond corrector protein DsbC ND442_01360 PF02683 Cytochrome C biogenesis protein transmembrane region ND442_01365 PF03091 CutA1 divalent ion tolerance protein ND442_01370 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND442_01375 PF10415 Fumarase C C-terminus ND442_01375 PF00206 Lyase ND442_01380 PF04186 FxsA cytoplasmic membrane protein ND442_01385 PF00166 Chaperonin 10 Kd subunit ND442_01390 PF00118 TCP-1/cpn60 chaperonin family ND442_01395 PF13698 Domain of unknown function (DUF4156) ND442_01400 PF04055 Radical SAM superfamily ND442_01405 PF08207 Elongation factor P (EF-P) KOW-like domain ND442_01405 PF01132 Elongation factor P (EF-P) OB domain ND442_01405 PF09285 Elongation factor P, C-terminal ND442_01410 PF18416 N-acetylglucosamine binding protein domain 2 ND442_01410 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND442_01415 PF00196 Bacterial regulatory proteins, luxR family ND442_01425 PF02753 Pili assembly chaperone PapD, C-terminal domain ND442_01425 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND442_01430 PF13953 PapC C-terminal domain ND442_01430 PF13954 PapC N-terminal domain ND442_01430 PF00577 Outer membrane usher protein ND442_01435 PF00419 Fimbrial protein ND442_01440 PF00893 Small Multidrug Resistance protein ND442_01445 PF08212 Lipocalin-like domain ND442_01450 PF02313 Fumarate reductase subunit D ND442_01455 PF02300 Fumarate reductase subunit C ND442_01460 PF13085 2Fe-2S iron-sulfur cluster binding domain ND442_01460 PF13183 4Fe-4S dicluster domain ND442_01465 PF00890 FAD binding domain ND442_01465 PF02910 Fumarate reductase flavoprotein C-term ND442_01470 PF00152 tRNA synthetases class II (D, K and N) ND442_01475 PF00924 Mechanosensitive ion channel ND442_01475 PF12795 Mechanosensitive ion channel porin domain ND442_01475 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND442_01480 PF02666 Phosphatidylserine decarboxylase ND442_01485 PF03193 RsgA GTPase ND442_01490 PF00929 Exonuclease ND442_01510 PF08331 Domain of unknown function (DUF1730) ND442_01515 PF03853 YjeF-related protein N-terminus ND442_01515 PF01256 Carbohydrate kinase ND442_01520 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ND442_01525 PF01520 N-acetylmuramoyl-L-alanine amidase ND442_01530 PF08676 MutL C terminal dimerisation domain ND442_01530 PF01119 DNA mismatch repair protein, C-terminal domain ND442_01540 PF17209 Hfq protein ND442_01545 PF16360 GTP-binding GTPase Middle Region ND442_01545 PF13167 GTP-binding GTPase N-terminal ND442_01545 PF01926 50S ribosome-binding GTPase ND442_01550 PF01145 SPFH domain / Band 7 family ND442_01550 PF12221 Bacterial membrane protein N terminal ND442_01555 PF01145 SPFH domain / Band 7 family ND442_01560 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ND442_01565 PF00709 Adenylosuccinate synthetase ND442_01570 PF02082 Transcriptional regulator ND442_01575 PF08461 Ribonuclease R winged-helix domain ND442_01575 PF08206 Ribonuclease B OB domain ND442_01575 PF00773 RNB domain ND442_01575 PF00575 S1 RNA binding domain ND442_01575 PF17876 Cold shock domain ND442_01580 PF00588 SpoU rRNA Methylase family ND442_01580 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND442_01600 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND442_01605 PF13953 PapC C-terminal domain ND442_01605 PF13954 PapC N-terminal domain ND442_01605 PF00577 Outer membrane usher protein ND442_01625 PF00326 Prolyl oligopeptidase family ND442_01635 PF01250 Ribosomal protein S6 ND442_01640 PF00436 Single-strand binding protein family ND442_01645 PF01084 Ribosomal protein S18 ND442_01650 PF01281 Ribosomal protein L9, N-terminal domain ND442_01650 PF03948 Ribosomal protein L9, C-terminal domain ND442_01655 PF08525 Opacity-associated protein A N-terminal motif ND442_01655 PF04225 Opacity-associated protein A LysM-like domain ND442_01660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND442_01660 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND442_01665 PF01814 Hemerythrin HHE cation binding domain ND442_01665 PF04405 Domain of Unknown function (DUF542) ND442_01670 PF02872 5'-nucleotidase, C-terminal domain ND442_01670 PF00149 Calcineurin-like phosphoesterase ND442_01675 PF00459 Inositol monophosphatase family ND442_01680 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ND442_01685 PF06526 Protein of unknown function (DUF1107) ND442_01690 PF03471 Transporter associated domain ND442_01690 PF01595 Cyclin M transmembrane N-terminal domain ND442_01690 PF00571 CBS domain ND442_01695 PF01625 Peptide methionine sulfoxide reductase ND442_01700 PF01103 Surface antigen ND442_01700 PF07244 Surface antigen variable number repeat ND442_01700 PF17243 POTRA domain TamA domain 1 ND442_01705 PF04357 TamB, inner membrane protein subunit of TAM complex ND442_01710 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ND442_01715 PF00719 Inorganic pyrophosphatase ND442_01720 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ND442_01725 PF01225 Mur ligase family, catalytic domain ND442_01725 PF02875 Mur ligase family, glutamate ligase domain ND442_01725 PF08245 Mur ligase middle domain ND442_01730 PF02863 Arginine repressor, C-terminal domain ND442_01730 PF01316 Arginine repressor, DNA binding domain ND442_01735 PF00056 lactate/malate dehydrogenase, NAD binding domain ND442_01735 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ND442_01740 PF13693 Winged helix-turn-helix DNA-binding ND442_01755 PF00348 Polyprenyl synthetase ND442_01760 PF00829 Ribosomal prokaryotic L21 protein ND442_01765 PF01016 Ribosomal L27 protein ND442_01770 PF00892 EamA-like transporter family ND442_01775 PF01018 GTP1/OBG ND442_01775 PF01926 50S ribosome-binding GTPase ND442_01780 PF00672 HAMP domain ND442_01780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_01780 PF00512 His Kinase A (phospho-acceptor) domain ND442_01785 PF00072 Response regulator receiver domain ND442_01785 PF00486 Transcriptional regulatory protein, C terminal ND442_01790 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ND442_01795 PF03449 Transcription elongation factor, N-terminal ND442_01795 PF01272 Transcription elongation factor, GreA/GreB, C-term ND442_01800 PF01985 CRS1 / YhbY (CRM) domain ND442_01805 PF01728 FtsJ-like methyltransferase ND442_01810 PF00004 ATPase family associated with various cellular activities (AAA) ND442_01810 PF06480 FtsH Extracellular ND442_01810 PF01434 Peptidase family M41 ND442_01810 PF17862 AAA+ lid domain ND442_01815 PF00809 Pterin binding enzyme ND442_01820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND442_01820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND442_01820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND442_01820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND442_01825 PF03840 Preprotein translocase SecG subunit ND442_01840 PF17384 RimP C-terminal SH3 domain ND442_01840 PF02576 RimP N-terminal domain ND442_01845 PF00575 S1 RNA binding domain ND442_01845 PF13184 NusA-like KH domain ND442_01845 PF08529 NusA N-terminal domain ND442_01850 PF00009 Elongation factor Tu GTP binding domain ND442_01850 PF08364 Bacterial translation initiation factor IF-2 associated region ND442_01850 PF04760 Translation initiation factor IF-2, N-terminal region ND442_01850 PF03144 Elongation factor Tu domain 2 ND442_01850 PF11987 Translation-initiation factor 2 ND442_01855 PF02033 Ribosome-binding factor A ND442_01860 PF16198 tRNA pseudouridylate synthase B C-terminal domain ND442_01860 PF01509 TruB family pseudouridylate synthase (N terminal domain) ND442_01860 PF09157 Pseudouridine synthase II TruB, C-terminal ND442_01865 PF00312 Ribosomal protein S15 ND442_01870 PF00013 KH domain ND442_01870 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ND442_01870 PF01138 3' exoribonuclease family, domain 1 ND442_01870 PF03725 3' exoribonuclease family, domain 2 ND442_01870 PF00575 S1 RNA binding domain ND442_01875 PF07719 Tetratricopeptide repeat ND442_01875 PF13181 Tetratricopeptide repeat ND442_01880 PF03880 DbpA RNA binding domain ND442_01880 PF00270 DEAD/DEAH box helicase ND442_01880 PF12343 Cold shock protein DEAD box A ND442_01880 PF00271 Helicase conserved C-terminal domain ND442_01885 PF00296 Luciferase-like monooxygenase ND442_01895 PF03313 Serine dehydratase alpha chain ND442_01900 PF01136 Peptidase family U32 ND442_01905 PF01136 Peptidase family U32 ND442_01910 PF02036 SCP-2 sterol transfer family ND442_01915 PF13508 Acetyltransferase (GNAT) domain ND442_01920 PF01541 GIY-YIG catalytic domain ND442_01925 PF13520 Amino acid permease ND442_01930 PF01276 Orn/Lys/Arg decarboxylase, major domain ND442_01930 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND442_01930 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND442_01935 PF10940 Protein of unknown function (DUF2618) ND442_01945 PF13460 NAD(P)H-binding ND442_01950 PF12706 Beta-lactamase superfamily domain ND442_01960 PF07969 Amidohydrolase family ND442_01965 PF00005 ABC transporter ND442_01970 PF00005 ABC transporter ND442_01975 PF06007 Phosphonate metabolism protein PhnJ ND442_01980 PF05861 Bacterial phosphonate metabolism protein (PhnI) ND442_01985 PF05845 Bacterial phosphonate metabolism protein (PhnH) ND442_01990 PF06754 Phosphonate metabolism protein PhnG ND442_02000 PF13597 Anaerobic ribonucleoside-triphosphate reductase ND442_02000 PF03477 ATP cone domain ND442_02005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND442_02005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND442_02010 PF06877 Regulator of ribonuclease activity B ND442_02015 PF00583 Acetyltransferase (GNAT) family ND442_02020 PF00133 tRNA synthetases class I (I, L, M and V) ND442_02020 PF08264 Anticodon-binding domain of tRNA ND442_02020 PF10458 Valyl tRNA synthetase tRNA binding arm ND442_02025 PF04364 DNA polymerase III chi subunit, HolC ND442_02030 PF02789 Cytosol aminopeptidase family, N-terminal domain ND442_02030 PF00883 Cytosol aminopeptidase family, catalytic domain ND442_02035 PF03739 Lipopolysaccharide export system permease LptF/LptG ND442_02040 PF03739 Lipopolysaccharide export system permease LptF/LptG ND442_02080 PF04221 RelB antitoxin ND442_02085 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ND442_02130 PF00892 EamA-like transporter family ND442_02175 PF01344 Kelch motif ND442_02180 PF06178 Oligogalacturonate-specific porin protein (KdgM) ND442_02185 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND442_02185 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND442_02185 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain ND442_02200 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND442_02200 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND442_02200 PF09093 Lyase, catalytic ND442_02200 PF09092 Lyase, N terminal ND442_02205 PF00884 Sulfatase ND442_02210 PF00455 DeoR C terminal sensor domain ND442_02210 PF08220 DeoR-like helix-turn-helix domain ND442_02215 PF08013 Tagatose 6 phosphate kinase ND442_02220 PF01380 SIS domain ND442_02225 PF03830 PTS system sorbose subfamily IIB component ND442_02230 PF03609 PTS system sorbose-specific iic component ND442_02235 PF03613 PTS system mannose/fructose/sorbose family IID component ND442_02245 PF01979 Amidohydrolase family ND442_02250 PF04962 KduI/IolB family ND442_02260 PF07470 Glycosyl Hydrolase Family 88 ND442_02265 PF04055 Radical SAM superfamily ND442_02265 PF13186 Iron-sulfur cluster-binding domain ND442_02270 PF00884 Sulfatase ND442_02280 PF01116 Fructose-bisphosphate aldolase class-II ND442_02290 PF10696 Protein of unknown function (DUF2501) ND442_02295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND442_02310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND442_02315 PF00873 AcrB/AcrD/AcrF family ND442_02320 PF00465 Iron-containing alcohol dehydrogenase ND442_02325 PF02733 Dak1 domain ND442_02330 PF02734 DAK2 domain ND442_02335 PF03610 PTS system fructose IIA component ND442_02335 PF05524 PEP-utilising enzyme, N-terminal ND442_02335 PF00391 PEP-utilising enzyme, mobile domain ND442_02335 PF00381 PTS HPr component phosphorylation site ND442_02340 PF00158 Sigma-54 interaction domain ND442_02340 PF02954 Bacterial regulatory protein, Fis family ND442_02340 PF00989 PAS fold ND442_02345 PF00990 Diguanylate cyclase, GGDEF domain ND442_02350 PF07256 Protein of unknown function (DUF1435) ND442_02370 PF08468 Methyltransferase small domain N-terminal ND442_02370 PF05175 Methyltransferase small domain ND442_02375 PF03603 DNA polymerase III psi subunit ND442_02380 PF00583 Acetyltransferase (GNAT) family ND442_02385 PF00009 Elongation factor Tu GTP binding domain ND442_02385 PF03144 Elongation factor Tu domain 2 ND442_02385 PF16658 Class II release factor RF3, C-terminal domain ND442_02390 PF04972 BON domain ND442_02395 PF07043 Protein of unknown function (DUF1328) ND442_02400 PF01734 Patatin-like phospholipase ND442_02405 PF01026 TatD related DNase ND442_02410 PF07662 Na+ dependent nucleoside transporter C-terminus ND442_02410 PF01773 Na+ dependent nucleoside transporter N-terminus ND442_02410 PF07670 Nucleoside recognition ND442_02415 PF01791 DeoC/LacD family aldolase ND442_02420 PF02885 Glycosyl transferase family, helical bundle domain ND442_02420 PF00591 Glycosyl transferase family, a/b domain ND442_02420 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ND442_02425 PF01676 Metalloenzyme superfamily ND442_02430 PF01048 Phosphorylase superfamily ND442_02435 PF10144 Bacterial virulence factor haemolysin ND442_02440 PF18429 Domain of unknown function (DUF5609) ND442_02445 PF18073 Rubredoxin metal binding domain ND442_02450 PF13521 AAA domain ND442_02450 PF01381 Helix-turn-helix ND442_02455 PF12848 ABC transporter ND442_02455 PF00005 ABC transporter ND442_02470 PF00690 Cation transporter/ATPase, N-terminus ND442_02470 PF00689 Cation transporting ATPase, C-terminus ND442_02480 PF01464 Transglycosylase SLT domain ND442_02480 PF14718 Soluble lytic murein transglycosylase L domain ND442_02485 PF01371 Trp repressor protein ND442_02490 PF01931 Protein of unknown function DUF84 ND442_02495 PF00300 Histidine phosphatase superfamily (branch 1) ND442_02500 PF06445 GyrI-like small molecule binding domain ND442_02500 PF12833 Helix-turn-helix domain ND442_02505 PF05981 CreA protein ND442_02510 PF00072 Response regulator receiver domain ND442_02510 PF00486 Transcriptional regulatory protein, C terminal ND442_02520 PF08254 Threonine leader peptide ND442_02525 PF00742 Homoserine dehydrogenase ND442_02525 PF13840 ACT domain ND442_02525 PF01842 ACT domain ND442_02525 PF00696 Amino acid kinase family ND442_02525 PF03447 Homoserine dehydrogenase, NAD binding domain ND442_02530 PF08544 GHMP kinases C terminal ND442_02530 PF00288 GHMP kinases N terminal domain ND442_02535 PF00291 Pyridoxal-phosphate dependent enzyme ND442_02535 PF14821 Threonine synthase N terminus ND442_02540 PF03883 Peroxide stress protein YaaA ND442_02545 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND442_02550 PF00994 Probable molybdopterin binding domain ND442_02555 PF07690 Major Facilitator Superfamily ND442_02565 PF01184 GPR1/FUN34/yaaH family ND442_02570 PF00012 Hsp70 protein ND442_02575 PF00226 DnaJ domain ND442_02575 PF01556 DnaJ C terminal domain ND442_02575 PF00684 DnaJ central domain ND442_02580 PF06965 Na+/H+ antiporter 1 ND442_02585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_02585 PF03466 LysR substrate binding domain ND442_02590 PF01649 Ribosomal protein S20 ND442_02595 PF06574 FAD synthetase ND442_02595 PF01687 Riboflavin kinase ND442_02600 PF08264 Anticodon-binding domain of tRNA ND442_02600 PF06827 Zinc finger found in FPG and IleRS ND442_02600 PF00133 tRNA synthetases class I (I, L, M and V) ND442_02605 PF01252 Signal peptidase (SPase) II ND442_02610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND442_02615 PF02401 LytB protein ND442_02620 PF05173 Dihydrodipicolinate reductase, C-terminus ND442_02620 PF01113 Dihydrodipicolinate reductase, N-terminus ND442_02625 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ND442_02625 PF00117 Glutamine amidotransferase class-I ND442_02630 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ND442_02630 PF02142 MGS-like domain ND442_02630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND442_02635 PF01810 LysE type translocator ND442_02640 PF06738 Putative threonine/serine exporter ND442_02645 PF12821 Threonine/Serine exporter, ThrE ND442_02650 PF00186 Dihydrofolate reductase ND442_02660 PF00149 Calcineurin-like phosphoesterase ND442_02665 PF04379 ApaG domain ND442_02670 PF00398 Ribosomal RNA adenine dimethylase ND442_02675 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ND442_02680 PF00639 PPIC-type PPIASE domain ND442_02680 PF09312 SurA N-terminal domain ND442_02685 PF04453 LPS transport system D ND442_02685 PF03968 OstA-like protein ND442_02690 PF00226 DnaJ domain ND442_02690 PF05099 Tellurite resistance protein TerB ND442_02695 PF00849 RNA pseudouridylate synthase ND442_02700 PF00176 SNF2 family N-terminal domain ND442_02700 PF00271 Helicase conserved C-terminal domain ND442_02700 PF12137 RNA polymerase recycling family C-terminal ND442_02700 PF18339 RapA N-terminal Tudor like domain 1 ND442_02700 PF18337 RapA N-terminal Tudor like domain ND442_02705 PF00136 DNA polymerase family B ND442_02705 PF03104 DNA polymerase family B, exonuclease domain ND442_02710 PF09335 SNARE associated Golgi protein ND442_02715 PF00005 ABC transporter ND442_02720 PF00528 Binding-protein-dependent transport system inner membrane component ND442_02730 PF12793 Sugar transport-related sRNA regulator N-term ND442_02730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND442_02740 PF07690 Major Facilitator Superfamily ND442_02745 PF00694 Aconitase C-terminal domain ND442_02750 PF00330 Aconitase family (aconitate hydratase) ND442_02755 PF00180 Isocitrate/isopropylmalate dehydrogenase ND442_02760 PF00682 HMGL-like ND442_02760 PF08502 LeuA allosteric (dimerisation) domain ND442_02765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_02765 PF03466 LysR substrate binding domain ND442_02770 PF00501 AMP-binding enzyme ND442_02775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND442_02775 PF00205 Thiamine pyrophosphate enzyme, central domain ND442_02775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND442_02780 PF10369 Small subunit of acetolactate synthase ND442_02785 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND442_02785 PF00356 Bacterial regulatory proteins, lacI family ND442_02790 PF06610 L-alanine exporter ND442_02795 PF02381 MraZ protein, putative antitoxin-like ND442_02800 PF01795 MraW methylase family ND442_02805 PF04999 Cell division protein FtsL ND442_02810 PF03717 Penicillin-binding Protein dimerisation domain ND442_02810 PF00905 Penicillin binding protein transpeptidase domain ND442_02815 PF01225 Mur ligase family, catalytic domain ND442_02815 PF02875 Mur ligase family, glutamate ligase domain ND442_02815 PF08245 Mur ligase middle domain ND442_02820 PF08245 Mur ligase middle domain ND442_02820 PF02875 Mur ligase family, glutamate ligase domain ND442_02820 PF01225 Mur ligase family, catalytic domain ND442_02825 PF00953 Glycosyl transferase family 4 ND442_02825 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ND442_02830 PF02875 Mur ligase family, glutamate ligase domain ND442_02830 PF08245 Mur ligase middle domain ND442_02835 PF01098 Cell cycle protein ND442_02840 PF03033 Glycosyltransferase family 28 N-terminal domain ND442_02840 PF04101 Glycosyltransferase family 28 C-terminal domain ND442_02845 PF02875 Mur ligase family, glutamate ligase domain ND442_02845 PF08245 Mur ligase middle domain ND442_02845 PF01225 Mur ligase family, catalytic domain ND442_02850 PF07478 D-ala D-ala ligase C-terminus ND442_02850 PF01820 D-ala D-ala ligase N-terminus ND442_02855 PF03799 Cell division protein FtsQ ND442_02855 PF08478 POTRA domain, FtsQ-type ND442_02860 PF02491 SHS2 domain inserted in FTSA ND442_02865 PF12327 FtsZ family, C-terminal domain ND442_02865 PF00091 Tubulin/FtsZ family, GTPase domain ND442_02870 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ND442_02880 PF06558 Secretion monitor precursor protein (SecM) ND442_02885 PF02810 SEC-C motif ND442_02885 PF07517 SecA DEAD-like domain ND442_02885 PF07516 SecA Wing and Scaffold domain ND442_02885 PF01043 SecA preprotein cross-linking domain ND442_02890 PF00293 NUDIX domain ND442_02895 PF03884 DNA gyrase inhibitor YacG ND442_02900 PF07072 Cell division protein ND442_02905 PF01121 Dephospho-CoA kinase ND442_02910 PF00478 IMP dehydrogenase / GMP reductase domain ND442_02915 PF00482 Type II secretion system (T2SS), protein F ND442_02920 PF00437 Type II/IV secretion system protein ND442_02920 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ND442_02925 PF07963 Prokaryotic N-terminal methylation motif ND442_02930 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ND442_02930 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ND442_02935 PF01510 N-acetylmuramoyl-L-alanine amidase ND442_02940 PF17113 Regulatory signalling modulator protein AmpE ND442_02945 PF00324 Amino acid permease ND442_02950 PF07729 FCD domain ND442_02950 PF00392 Bacterial regulatory proteins, gntR family ND442_02955 PF17831 Pyruvate dehydrogenase E1 component middle domain ND442_02955 PF00456 Transketolase, thiamine diphosphate binding domain ND442_02960 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND442_02960 PF00364 Biotin-requiring enzyme ND442_02960 PF02817 e3 binding domain ND442_02965 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND442_02965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND442_02975 PF00330 Aconitase family (aconitate hydratase) ND442_02975 PF06434 Aconitate hydratase 2 N-terminus ND442_02975 PF11791 Aconitate B N-terminal domain ND442_02980 PF06062 Uncharacterised protein family (UPF0231) ND442_02985 PF00892 EamA-like transporter family ND442_02990 PF02675 S-adenosylmethionine decarboxylase ND442_02995 PF17284 Spermidine synthase tetramerisation domain ND442_03000 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND442_03005 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND442_03005 PF07732 Multicopper oxidase ND442_03005 PF07731 Multicopper oxidase ND442_03005 PF00394 Multicopper oxidase ND442_03010 PF00156 Phosphoribosyl transferase domain ND442_03015 PF00484 Carbonic anhydrase ND442_03020 PF00005 ABC transporter ND442_03025 PF01061 ABC-2 type transporter ND442_03030 PF01522 Polysaccharide deacetylase ND442_03035 PF02261 Aspartate decarboxylase ND442_03040 PF02569 Pantoate-beta-alanine ligase ND442_03045 PF02548 Ketopantoate hydroxymethyltransferase ND442_03050 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ND442_03055 PF12626 Polymerase A arginine-rich C-terminus ND442_03055 PF12627 Probable RNA and SrmB- binding site of polymerase A ND442_03055 PF01743 Poly A polymerase head domain ND442_03060 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND442_03065 PF01258 Prokaryotic dksA/traR C4-type zinc finger ND442_03070 PF17746 SfsA N-terminal OB domain ND442_03070 PF03749 Sugar fermentation stimulation protein RE domain ND442_03075 PF02834 LigT like Phosphoesterase ND442_03080 PF04408 Helicase associated domain (HA2) ND442_03080 PF08482 ATP-dependent helicase C-terminal ND442_03080 PF00270 DEAD/DEAH box helicase ND442_03080 PF00271 Helicase conserved C-terminal domain ND442_03085 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ND442_03085 PF00912 Transglycosylase ND442_03085 PF00905 Penicillin binding protein transpeptidase domain ND442_03085 PF14814 Bifunctional transglycosylase second domain ND442_03090 PF00202 Aminotransferase class-III ND442_03095 PF00654 Voltage gated chloride channel ND442_03100 PF01521 Iron-sulphur cluster biosynthesis ND442_03105 PF03458 UPF0126 domain ND442_03110 PF01497 Periplasmic binding protein ND442_03115 PF01048 Phosphorylase superfamily ND442_03120 PF01966 HD domain ND442_03120 PF13286 Phosphohydrolase-associated domain ND442_03125 PF00595 PDZ domain ND442_03130 PF00512 His Kinase A (phospho-acceptor) domain ND442_03130 PF00672 HAMP domain ND442_03130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_03130 PF00072 Response regulator receiver domain ND442_03130 PF01627 Hpt domain ND442_03130 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND442_03135 PF01938 TRAM domain ND442_03135 PF05958 tRNA (Uracil-5-)-methyltransferase ND442_03140 PF04607 Region found in RelA / SpoT proteins ND442_03140 PF02824 TGS domain ND442_03140 PF13291 ACT domain ND442_03145 PF03819 MazG nucleotide pyrophosphohydrolase domain ND442_03150 PF06418 CTP synthase N-terminus ND442_03150 PF00117 Glutamine amidotransferase class-I ND442_03155 PF00113 Enolase, C-terminal TIM barrel domain ND442_03155 PF03952 Enolase, N-terminal domain ND442_03160 PF04055 Radical SAM superfamily ND442_03165 PF01242 6-pyruvoyl tetrahydropterin synthase ND442_03170 PF00258 Flavodoxin ND442_03170 PF00175 Oxidoreductase NAD-binding domain ND442_03170 PF00667 FAD binding domain ND442_03175 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND442_03175 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND442_03180 PF01507 Phosphoadenosine phosphosulfate reductase family ND442_03195 PF04389 Peptidase family M28 ND442_03200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND442_03200 PF10414 Sirohaem synthase dimerisation region ND442_03200 PF14824 Sirohaem biosynthesis protein central ND442_03205 PF01507 Phosphoadenosine phosphosulfate reductase family ND442_03210 PF00009 Elongation factor Tu GTP binding domain ND442_03220 PF12084 Protein of unknown function (DUF3561) ND442_03225 PF04977 Septum formation initiator ND442_03230 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ND442_03235 PF02542 YgbB family ND442_03240 PF01142 tRNA pseudouridine synthase D (TruD) ND442_03245 PF01975 Survival protein SurE ND442_03255 PF01551 Peptidase family M23 ND442_03255 PF01476 LysM domain ND442_03260 PF04545 Sigma-70, region 4 ND442_03260 PF04539 Sigma-70 region 3 ND442_03260 PF04542 Sigma-70 region 2 ND442_03260 PF00140 Sigma-70 factor, region 1.2 ND442_03265 PF01624 MutS domain I ND442_03265 PF05188 MutS domain II ND442_03265 PF05192 MutS domain III ND442_03265 PF05190 MutS family domain IV ND442_03265 PF00488 MutS domain V ND442_03300 PF13193 AMP-binding enzyme C-terminal domain ND442_03300 PF00668 Condensation domain ND442_03300 PF00550 Phosphopantetheine attachment site ND442_03300 PF00501 AMP-binding enzyme ND442_03335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_03335 PF00512 His Kinase A (phospho-acceptor) domain ND442_03335 PF09308 LuxQ, periplasmic ND442_03335 PF00072 Response regulator receiver domain ND442_03340 PF00196 Bacterial regulatory proteins, luxR family ND442_03340 PF00072 Response regulator receiver domain ND442_03355 PF01464 Transglycosylase SLT domain ND442_03375 PF01514 Secretory protein of YscJ/FliF family ND442_03395 PF12833 Helix-turn-helix domain ND442_03400 PF00263 Bacterial type II and III secretion system protein ND442_03400 PF03958 Bacterial type II/III secretion system short domain ND442_03405 PF07201 HrpJ-like domain ND442_03410 PF00771 FHIPEP family ND442_03420 PF18269 T3SS EscN ATPase C-terminal domain ND442_03420 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND442_03420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND442_03435 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND442_03440 PF00813 FliP family ND442_03445 PF01313 Bacterial export proteins, family 3 ND442_03450 PF01311 Bacterial export proteins, family 1 ND442_03455 PF01312 FlhB HrpN YscU SpaS Family ND442_03460 PF07720 Tetratricopeptide repeat ND442_03485 PF00550 Phosphopantetheine attachment site ND442_03505 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND442_03505 PF18416 N-acetylglucosamine binding protein domain 2 ND442_03510 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND442_03515 PF06750 Bacterial Peptidase A24 N-terminal domain ND442_03515 PF01478 Type IV leader peptidase family ND442_03525 PF05134 Type II secretion system (T2SS), protein L ND442_03525 PF12693 GspL periplasmic domain ND442_03530 PF03934 Type II secretion system (T2SS), protein K ND442_03535 PF11612 Type II secretion system (T2SS), protein J ND442_03535 PF07963 Prokaryotic N-terminal methylation motif ND442_03540 PF07963 Prokaryotic N-terminal methylation motif ND442_03540 PF02501 Type II secretion system (T2SS), protein I ND442_03550 PF08334 Type II secretion system (T2SS), protein G ND442_03550 PF07963 Prokaryotic N-terminal methylation motif ND442_03555 PF00482 Type II secretion system (T2SS), protein F ND442_03560 PF00437 Type II/IV secretion system protein ND442_03565 PF03958 Bacterial type II/III secretion system short domain ND442_03565 PF00263 Bacterial type II and III secretion system protein ND442_03570 PF11356 Type II secretion system protein C ND442_03595 PF05683 Fumarase C-terminus ND442_03595 PF05681 Fumarate hydratase (Fumerase) ND442_03600 PF07690 Major Facilitator Superfamily ND442_03605 PF02464 Competence-damaged protein ND442_03610 PF00154 recA bacterial DNA recombination protein ND442_03615 PF02631 RecX family ND442_03620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND442_03620 PF01411 tRNA synthetases class II (A) ND442_03620 PF02272 DHHA1 domain ND442_03625 PF02599 Global regulator protein family ND442_03650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND442_03650 PF01411 tRNA synthetases class II (A) ND442_03655 PF13419 Haloacid dehalogenase-like hydrolase ND442_03660 PF09335 SNARE associated Golgi protein ND442_03665 PF04262 Glutamate-cysteine ligase ND442_03670 PF02664 S-Ribosylhomocysteinase (LuxS) ND442_03675 PF00571 CBS domain ND442_03675 PF01595 Cyclin M transmembrane N-terminal domain ND442_03675 PF03471 Transporter associated domain ND442_03680 PF01578 Cytochrome C assembly protein ND442_03685 PF02881 SRP54-type protein, helical bundle domain ND442_03685 PF02978 Signal peptide binding domain ND442_03685 PF00448 SRP54-type protein, GTPase domain ND442_03690 PF00886 Ribosomal protein S16 ND442_03695 PF05239 PRC-barrel domain ND442_03695 PF01782 RimM N-terminal domain ND442_03700 PF01746 tRNA (Guanine-1)-methyltransferase ND442_03705 PF01245 Ribosomal protein L19 ND442_03710 PF04338 Protein of unknown function, DUF481 ND442_03715 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND442_03720 PF00072 Response regulator receiver domain ND442_03720 PF04397 LytTr DNA-binding domain ND442_03725 PF00793 DAHP synthetase I family ND442_03730 PF01817 Chorismate mutase type II ND442_03730 PF02153 Prephenate dehydrogenase ND442_03735 PF00800 Prephenate dehydratase ND442_03735 PF01817 Chorismate mutase type II ND442_03745 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND442_03750 PF13525 Outer membrane lipoprotein ND442_03755 PF00849 RNA pseudouridylate synthase ND442_03755 PF01479 S4 domain ND442_03760 PF02578 Multi-copper polyphenol oxidoreductase laccase ND442_03765 PF10431 C-terminal, D2-small domain, of ClpB protein ND442_03765 PF00004 ATPase family associated with various cellular activities (AAA) ND442_03765 PF07724 AAA domain (Cdc48 subfamily) ND442_03765 PF17871 AAA lid domain ND442_03765 PF02861 Clp amino terminal domain, pathogenicity island component ND442_03800 PF03372 Endonuclease/Exonuclease/phosphatase family ND442_03805 PF01476 LysM domain ND442_03805 PF01464 Transglycosylase SLT domain ND442_03810 PF16123 Hydroxyacylglutathione hydrolase C-terminus ND442_03810 PF00753 Metallo-beta-lactamase superfamily ND442_03815 PF08241 Methyltransferase domain ND442_03820 PF00075 RNase H ND442_03825 PF00929 Exonuclease ND442_03835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND442_03835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND442_03835 PF09317 Domain of unknown function (DUF1974) ND442_03840 PF13580 SIS domain ND442_03845 PF13230 Glutamine amidotransferases class-II ND442_03850 PF03734 L,D-transpeptidase catalytic domain ND442_03855 PF11973 NQRA C-terminal domain ND442_03855 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ND442_03860 PF03116 NQR2, RnfD, RnfE family ND442_03865 PF04205 FMN-binding domain ND442_03870 PF02508 Rnf-Nqr subunit, membrane protein ND442_03875 PF02508 Rnf-Nqr subunit, membrane protein ND442_03880 PF00970 Oxidoreductase FAD-binding domain ND442_03880 PF00111 2Fe-2S iron-sulfur cluster binding domain ND442_03880 PF00175 Oxidoreductase NAD-binding domain ND442_03885 PF02424 ApbE family ND442_03890 PF04400 (Na+)-NQR maturation NqrM ND442_03895 PF03009 Glycerophosphoryl diester phosphodiesterase family ND442_03900 PF11798 IMS family HHH motif ND442_03900 PF11799 impB/mucB/samB family C-terminal domain ND442_03900 PF00817 impB/mucB/samB family ND442_03905 PF07687 Peptidase dimerisation domain ND442_03905 PF01546 Peptidase family M20/M25/M40 ND442_03910 PF00156 Phosphoribosyl transferase domain ND442_03915 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ND442_03920 PF07417 Sigma factor-binding transcriptional regulator Crl ND442_03925 PF00696 Amino acid kinase family ND442_03925 PF01472 PUA domain ND442_03930 PF00171 Aldehyde dehydrogenase family ND442_03935 PF07238 PilZ domain ND442_03935 PF07317 Flagellar regulator YcgR ND442_03960 PF07715 TonB-dependent Receptor Plug Domain ND442_03960 PF00593 TonB dependent receptor ND442_03965 PF01202 Shikimate kinase ND442_03985 PF07302 AroM protein ND442_03990 PF06865 Pyrimidine/purine nucleoside phosphorylase ND442_03995 PF04381 Putative exonuclease, RdgC ND442_04000 PF00480 ROK family ND442_04005 PF13476 AAA domain ND442_04010 PF00149 Calcineurin-like phosphoesterase ND442_04010 PF12320 Type 5 capsule protein repressor C-terminal domain ND442_04015 PF00072 Response regulator receiver domain ND442_04015 PF00486 Transcriptional regulatory protein, C terminal ND442_04020 PF11808 Phosphate regulon sensor protein PhoR ND442_04020 PF00512 His Kinase A (phospho-acceptor) domain ND442_04020 PF00989 PAS fold ND442_04020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_04025 PF12849 PBP superfamily domain ND442_04030 PF05525 Branched-chain amino acid transport protein ND442_04035 PF00324 Amino acid permease ND442_04040 PF00128 Alpha amylase, catalytic domain ND442_04040 PF02903 Alpha amylase, N-terminal ig-like domain ND442_04050 PF10417 C-terminal domain of 1-Cys peroxiredoxin ND442_04050 PF00578 AhpC/TSA family ND442_04055 PF04336 Acyl carrier protein phosphodiesterase ND442_04060 PF02547 Queuosine biosynthesis protein ND442_04065 PF01702 Queuine tRNA-ribosyltransferase ND442_04070 PF02699 Preprotein translocase subunit ND442_04075 PF13721 SecD export protein N-terminal TM region ND442_04075 PF02355 Protein export membrane protein ND442_04075 PF07549 SecD/SecF GG Motif ND442_04080 PF07549 SecD/SecF GG Motif ND442_04080 PF02355 Protein export membrane protein ND442_04085 PF03477 ATP cone domain ND442_04090 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND442_04090 PF01872 RibD C-terminal domain ND442_04095 PF00885 6,7-dimethyl-8-ribityllumazine synthase ND442_04100 PF01029 NusB family ND442_04105 PF02769 AIR synthase related protein, C-terminal domain ND442_04105 PF00586 AIR synthase related protein, N-terminal domain ND442_04110 PF04608 Phosphatidylglycerophosphatase A ND442_04115 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ND442_04115 PF02779 Transketolase, pyrimidine binding domain ND442_04115 PF02780 Transketolase, C-terminal domain ND442_04120 PF00348 Polyprenyl synthetase ND442_04125 PF02609 Exonuclease VII small subunit ND442_04130 PF02568 Thiamine biosynthesis protein (ThiI) ND442_04130 PF02926 THUMP domain ND442_04135 PF00072 Response regulator receiver domain ND442_04135 PF14532 Sigma-54 interaction domain ND442_04135 PF02954 Bacterial regulatory protein, Fis family ND442_04140 PF00672 HAMP domain ND442_04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_04140 PF00512 His Kinase A (phospho-acceptor) domain ND442_04150 PF07690 Major Facilitator Superfamily ND442_04155 PF01965 DJ-1/PfpI family ND442_04160 PF02558 Ketopantoate reductase PanE/ApbA ND442_04160 PF08546 Ketopantoate reductase PanE/ApbA C terminal ND442_04165 PF04461 Protein of unknown function (DUF520) ND442_04170 PF07690 Major Facilitator Superfamily ND442_04175 PF01040 UbiA prenyltransferase family ND442_04180 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ND442_04185 PF00510 Cytochrome c oxidase subunit III ND442_04190 PF00115 Cytochrome C and Quinol oxidase polypeptide I ND442_04195 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ND442_04195 PF06481 COX Aromatic Rich Motif ND442_04200 PF03502 Nucleoside-specific channel-forming protein, Tsx ND442_04205 PF07690 Major Facilitator Superfamily ND442_04210 PF03923 Uncharacterized lipoprotein ND442_04210 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND442_04215 PF01722 BolA-like protein ND442_04220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND442_04220 PF05698 Bacterial trigger factor protein (TF) C-terminus ND442_04220 PF05697 Bacterial trigger factor protein (TF) ND442_04225 PF00574 Clp protease ND442_04230 PF10431 C-terminal, D2-small domain, of ClpB protein ND442_04230 PF07724 AAA domain (Cdc48 subfamily) ND442_04230 PF06689 ClpX C4-type zinc finger ND442_04235 PF02190 ATP-dependent protease La (LON) substrate-binding domain ND442_04235 PF00004 ATPase family associated with various cellular activities (AAA) ND442_04235 PF05362 Lon protease (S16) C-terminal proteolytic domain ND442_04240 PF00216 Bacterial DNA-binding protein ND442_04245 PF13145 PPIC-type PPIASE domain ND442_04260 PF06508 Queuosine biosynthesis protein QueC ND442_04265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND442_04265 PF12793 Sugar transport-related sRNA regulator N-term ND442_04280 PF01037 Lrp/AsnC ligand binding domain ND442_04280 PF13404 AsnC-type helix-turn-helix domain ND442_04285 PF00664 ABC transporter transmembrane region ND442_04285 PF00005 ABC transporter ND442_04290 PF00005 ABC transporter ND442_04290 PF00664 ABC transporter transmembrane region ND442_04295 PF00543 Nitrogen regulatory protein P-II ND442_04300 PF00909 Ammonium Transporter Family ND442_04310 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND442_04320 PF05321 Haemolysin expression modulating protein ND442_04325 PF10757 Biofilm formation regulator YbaJ ND442_04335 PF00444 Ribosomal protein L36 ND442_04340 PF01197 Ribosomal protein L31 ND442_04345 PF00873 AcrB/AcrD/AcrF family ND442_04350 PF00529 HlyD membrane-fusion protein of T1SS ND442_04350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND442_04355 PF00440 Bacterial regulatory proteins, tetR family ND442_04355 PF08361 MAATS-type transcriptional repressor, C-terminal region ND442_04360 PF02635 DsrE/DsrF-like family ND442_04365 PF00924 Mechanosensitive ion channel ND442_04365 PF12795 Mechanosensitive ion channel porin domain ND442_04365 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND442_04370 PF10689 Protein of unknown function (DUF2496) ND442_04380 PF04304 Protein of unknown function (DUF454) ND442_04385 PF00156 Phosphoribosyl transferase domain ND442_04390 PF01970 Tripartite tricarboxylate transporter TctA family ND442_04405 PF00072 Response regulator receiver domain ND442_04405 PF00486 Transcriptional regulatory protein, C terminal ND442_04410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_04410 PF00512 His Kinase A (phospho-acceptor) domain ND442_04415 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ND442_04415 PF12170 DNA polymerase III tau subunit V interacting with alpha ND442_04415 PF12169 DNA polymerase III subunits gamma and tau domain III ND442_04420 PF02575 YbaB/EbfC DNA-binding family ND442_04425 PF02132 RecR protein ND442_04425 PF13662 Toprim domain ND442_04430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_04430 PF00183 Hsp90 protein ND442_04435 PF05191 Adenylate kinase, active site lid ND442_04440 PF00762 Ferrochelatase ND442_04445 PF02706 Chain length determinant protein ND442_04450 PF00294 pfkB family carbohydrate kinase ND442_04455 PF00999 Sodium/hydrogen exchanger family ND442_04455 PF02254 TrkA-N domain ND442_04460 PF00149 Calcineurin-like phosphoesterase ND442_04460 PF02872 5'-nucleotidase, C-terminal domain ND442_04465 PF04073 Aminoacyl-tRNA editing domain ND442_04470 PF01963 TraB family ND442_04475 PF00403 Heavy-metal-associated domain ND442_04480 PF13411 MerR HTH family regulatory protein ND442_04485 PF01957 NfeD-like C-terminal, partner-binding ND442_04490 PF16200 C-terminal region of band_7 ND442_04490 PF01145 SPFH domain / Band 7 family ND442_04495 PF00085 Thioredoxin ND442_04500 PF00106 short chain dehydrogenase ND442_04505 PF13472 GDSL-like Lipase/Acylhydrolase family ND442_04510 PF00005 ABC transporter ND442_04520 PF02222 ATP-grasp domain ND442_04520 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ND442_04525 PF00731 AIR carboxylase ND442_04530 PF00149 Calcineurin-like phosphoesterase ND442_04535 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND442_04540 PF09190 DALR domain ND442_04540 PF01406 tRNA synthetases class I (C) catalytic domain ND442_04555 PF00419 Fimbrial protein ND442_04560 PF13953 PapC C-terminal domain ND442_04560 PF13954 PapC N-terminal domain ND442_04560 PF00577 Outer membrane usher protein ND442_04565 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND442_04565 PF02753 Pili assembly chaperone PapD, C-terminal domain ND442_04600 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ND442_04600 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ND442_04610 PF01022 Bacterial regulatory protein, arsR family ND442_04615 PF02040 Arsenical pump membrane protein ND442_04620 PF03960 ArsC family ND442_04630 PF00501 AMP-binding enzyme ND442_04655 PF01292 Prokaryotic cytochrome b561 ND442_04665 PF00343 Carbohydrate phosphorylase ND442_04675 PF00072 Response regulator receiver domain ND442_04675 PF00486 Transcriptional regulatory protein, C terminal ND442_04685 PF00483 Nucleotidyl transferase ND442_04695 PF07238 PilZ domain ND442_04695 PF00535 Glycosyl transferase family 2 ND442_04695 PF03552 Cellulose synthase ND442_04715 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND442_04715 PF00703 Glycosyl hydrolases family 2 ND442_04715 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND442_04715 PF16355 Domain of unknown function (DUF4982) ND442_04720 PF00072 Response regulator receiver domain ND442_04720 PF00512 His Kinase A (phospho-acceptor) domain ND442_04720 PF00672 HAMP domain ND442_04720 PF01627 Hpt domain ND442_04720 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND442_04720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_04725 PF00990 Diguanylate cyclase, GGDEF domain ND442_04725 PF00072 Response regulator receiver domain ND442_04730 PF00440 Bacterial regulatory proteins, tetR family ND442_04760 PF00196 Bacterial regulatory proteins, luxR family ND442_04765 PF00313 'Cold-shock' DNA-binding domain ND442_04770 PF00313 'Cold-shock' DNA-binding domain ND442_04775 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ND442_04785 PF00990 Diguanylate cyclase, GGDEF domain ND442_04785 PF05230 MASE2 domain ND442_04790 PF02416 mttA/Hcf106 family ND442_04795 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ND442_04795 PF04055 Radical SAM superfamily ND442_04800 PF03099 Biotin/lipoate A/B protein ligase family ND442_04805 PF04359 Protein of unknown function (DUF493) ND442_04810 PF07943 Penicillin-binding protein 5, C-terminal domain ND442_04810 PF00768 D-alanyl-D-alanine carboxypeptidase ND442_04815 PF03330 Lytic transglycolase ND442_04815 PF05036 Sporulation related domain ND442_04820 PF01098 Cell cycle protein ND442_04825 PF03717 Penicillin-binding Protein dimerisation domain ND442_04825 PF00905 Penicillin binding protein transpeptidase domain ND442_04830 PF02590 Predicted SPOUT methyltransferase ND442_04840 PF01467 Cytidylyltransferase-like ND442_04845 PF06144 DNA polymerase III, delta subunit ND442_04845 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ND442_04850 PF04390 Lipopolysaccharide-assembly ND442_04855 PF08264 Anticodon-binding domain of tRNA ND442_04855 PF00133 tRNA synthetases class I (I, L, M and V) ND442_04855 PF13603 Leucyl-tRNA synthetase, Domain 2 ND442_04860 PF07295 Zinc-ribbon containing domain ND442_04865 PF00005 ABC transporter ND442_04870 PF00528 Binding-protein-dependent transport system inner membrane component ND442_04875 PF00528 Binding-protein-dependent transport system inner membrane component ND442_04880 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND442_04885 PF00795 Carbon-nitrogen hydrolase ND442_04890 PF00571 CBS domain ND442_04890 PF03471 Transporter associated domain ND442_04895 PF02130 Uncharacterized protein family UPF0054 ND442_04900 PF02562 PhoH-like protein ND442_04905 PF04055 Radical SAM superfamily ND442_04905 PF01938 TRAM domain ND442_04905 PF00919 Uncharacterized protein family UPF0004 ND442_04910 PF01494 FAD binding domain ND442_04945 PF00733 Asparagine synthase ND442_04945 PF13537 Glutamine amidotransferase domain ND442_04950 PF13344 Haloacid dehalogenase-like hydrolase ND442_04955 PF01047 MarR family ND442_04955 PF00480 ROK family ND442_04960 PF01979 Amidohydrolase family ND442_04965 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ND442_04970 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND442_04970 PF00367 phosphotransferase system, EIIB ND442_04970 PF02378 Phosphotransferase system, EIIC ND442_04975 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND442_04975 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ND442_04980 PF03573 outer membrane porin, OprD family ND442_04985 PF13982 YbfN-like lipoprotein ND442_04990 PF03173 Putative carbohydrate binding domain ND442_04990 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ND442_04990 PF02838 Glycosyl hydrolase family 20, domain 2 ND442_04990 PF00728 Glycosyl hydrolase family 20, catalytic domain ND442_04995 PF01475 Ferric uptake regulator family ND442_05000 PF00258 Flavodoxin ND442_05005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND442_05005 PF00672 HAMP domain ND442_05005 PF02203 Tar ligand binding domain homologue ND442_05010 PF01402 Ribbon-helix-helix protein, copG family ND442_05015 PF12697 Alpha/beta hydrolase family ND442_05020 PF03925 SeqA protein C-terminal domain ND442_05020 PF17206 SeqA protein N-terminal domain ND442_05025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND442_05025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND442_05025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND442_05025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND442_05035 PF00072 Response regulator receiver domain ND442_05035 PF00486 Transcriptional regulatory protein, C terminal ND442_05040 PF13493 Domain of unknown function (DUF4118) ND442_05040 PF13492 GAF domain ND442_05040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_05040 PF00512 His Kinase A (phospho-acceptor) domain ND442_05040 PF02702 Osmosensitive K+ channel His kinase sensor domain ND442_05045 PF02669 K+-transporting ATPase, c chain ND442_05055 PF03814 Potassium-transporting ATPase A subunit ND442_05060 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) ND442_05065 PF10725 Protein of unknown function (DUF2517) ND442_05070 PF08349 Protein of unknown function (DUF1722) ND442_05075 PF03441 FAD binding domain of DNA photolyase ND442_05075 PF00875 DNA photolyase ND442_05080 PF02112 cAMP phosphodiesterases class-II ND442_05085 PF01784 NIF3 (NGG1p interacting factor 3) ND442_05090 PF02682 Carboxyltransferase domain, subdomain C and D ND442_05095 PF02626 Carboxyltransferase domain, subdomain A and B ND442_05100 PF03746 LamB/YcsF family ND442_05115 PF01470 Pyroglutamyl peptidase ND442_05125 PF00285 Citrate synthase, C-terminal domain ND442_05130 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND442_05135 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND442_05140 PF00890 FAD binding domain ND442_05140 PF02910 Fumarate reductase flavoprotein C-term ND442_05145 PF13085 2Fe-2S iron-sulfur cluster binding domain ND442_05150 PF16078 2-oxoglutarate dehydrogenase N-terminus ND442_05150 PF00676 Dehydrogenase E1 component ND442_05150 PF16870 2-oxoglutarate dehydrogenase C-terminal ND442_05150 PF02779 Transketolase, pyrimidine binding domain ND442_05155 PF00364 Biotin-requiring enzyme ND442_05155 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND442_05155 PF02817 e3 binding domain ND442_05160 PF00549 CoA-ligase ND442_05160 PF08442 ATP-grasp domain ND442_05165 PF02629 CoA binding domain ND442_05165 PF00549 CoA-ligase ND442_05170 PF02872 5'-nucleotidase, C-terminal domain ND442_05170 PF00149 Calcineurin-like phosphoesterase ND442_05175 PF01654 Cytochrome bd terminal oxidase subunit I ND442_05180 PF02322 Cytochrome bd terminal oxidase subunit II ND442_05185 PF08173 Membrane bound YbgT-like protein ND442_05190 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ND442_05195 PF03061 Thioesterase superfamily ND442_05200 PF01618 MotA/TolQ/ExbB proton channel family ND442_05205 PF02472 Biopolymer transport protein ExbD/TolR ND442_05210 PF06519 TolA C-terminal ND442_05210 PF06519 TolA C-terminal ND442_05215 PF04052 TolB amino-terminal domain ND442_05215 PF07676 WD40-like Beta Propeller Repeat ND442_05220 PF00691 OmpA family ND442_05225 PF13174 Tetratricopeptide repeat ND442_05225 PF16331 TolA binding protein trimerisation ND442_05255 PF02445 Quinolinate synthetase A protein ND442_05260 PF04973 Nicotinamide mononucleotide transporter ND442_05265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_05265 PF00512 His Kinase A (phospho-acceptor) domain ND442_05265 PF01627 Hpt domain ND442_05265 PF00989 PAS fold ND442_05265 PF00072 Response regulator receiver domain ND442_05265 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND442_05270 PF00196 Bacterial regulatory proteins, luxR family ND442_05270 PF00072 Response regulator receiver domain ND442_05275 PF00793 DAHP synthetase I family ND442_05280 PF00300 Histidine phosphatase superfamily (branch 1) ND442_05290 PF01263 Aldose 1-epimerase ND442_05295 PF10509 Galactokinase galactose-binding signature ND442_05295 PF08544 GHMP kinases C terminal ND442_05295 PF00288 GHMP kinases N terminal domain ND442_05300 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ND442_05300 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ND442_05305 PF16363 GDP-mannose 4,6 dehydratase ND442_05320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_05320 PF03459 TOBE domain ND442_05325 PF10766 Multidrug efflux pump-associated protein AcrZ ND442_05335 PF00528 Binding-protein-dependent transport system inner membrane component ND442_05340 PF00005 ABC transporter ND442_05340 PF03459 TOBE domain ND442_05350 PF10282 Lactonase, 7-bladed beta-propeller ND442_05355 PF00202 Aminotransferase class-III ND442_05360 PF04055 Radical SAM superfamily ND442_05360 PF06968 Biotin and Thiamin Synthesis associated domain ND442_05365 PF00155 Aminotransferase class I and II ND442_05370 PF08241 Methyltransferase domain ND442_05380 PF00005 ABC transporter ND442_05385 PF02151 UvrB/uvrC motif ND442_05385 PF00271 Helicase conserved C-terminal domain ND442_05385 PF04851 Type III restriction enzyme, res subunit ND442_05385 PF12344 Ultra-violet resistance protein B ND442_05385 PF17757 UvrB interaction domain ND442_05390 PF09905 DNA-binding protein VF530 ND442_05405 PF01032 FecCD transport family ND442_05410 PF00005 ABC transporter ND442_05415 PF01933 Uncharacterised protein family UPF0052 ND442_05420 PF06463 Molybdenum Cofactor Synthesis C ND442_05420 PF04055 Radical SAM superfamily ND442_05425 PF01967 MoaC family ND442_05430 PF02597 ThiS family ND442_05435 PF02391 MoaE protein ND442_05440 PF01027 Inhibitor of apoptosis-promoting Bax1 ND442_05455 PF00005 ABC transporter ND442_05460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND442_05465 PF09209 Tetracyclin repressor-like, C-terminal domain ND442_05465 PF00440 Bacterial regulatory proteins, tetR family ND442_05470 PF00270 DEAD/DEAH box helicase ND442_05470 PF00271 Helicase conserved C-terminal domain ND442_05475 PF01207 Dihydrouridine synthase (Dus) ND442_05485 PF00768 D-alanyl-D-alanine carboxypeptidase ND442_05490 PF01565 FAD binding domain ND442_05490 PF09330 D-lactate dehydrogenase, membrane binding ND442_05495 PF01928 CYTH domain ND442_05500 PF01844 HNH endonuclease ND442_05510 PF04226 Transglycosylase associated protein ND442_05515 PF00005 ABC transporter ND442_05525 PF00528 Binding-protein-dependent transport system inner membrane component ND442_05530 PF00528 Binding-protein-dependent transport system inner membrane component ND442_05535 PF07308 Protein of unknown function (DUF1456) ND442_05540 PF00581 Rhodanese-like domain ND442_05545 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND442_05550 PF00528 Binding-protein-dependent transport system inner membrane component ND442_05555 PF00005 ABC transporter ND442_05560 PF00528 Binding-protein-dependent transport system inner membrane component ND442_05565 PF13520 Amino acid permease ND442_05570 PF01276 Orn/Lys/Arg decarboxylase, major domain ND442_05570 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND442_05570 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND442_05580 PF00892 EamA-like transporter family ND442_05585 PF00267 Gram-negative porin ND442_05590 PF06733 DEAD_2 ND442_05590 PF13307 Helicase C-terminal domain ND442_05595 PF02885 Glycosyl transferase family, helical bundle domain ND442_05600 PF05971 RNA methyltransferase ND442_05605 PF00005 ABC transporter ND442_05610 PF00528 Binding-protein-dependent transport system inner membrane component ND442_05615 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND442_05620 PF00210 Ferritin-like domain ND442_05625 PF13649 Methyltransferase domain ND442_05630 PF00892 EamA-like transporter family ND442_05635 PF13505 Outer membrane protein beta-barrel domain ND442_05640 PF03448 MgtE intracellular N domain ND442_05640 PF01769 Divalent cation transporter ND442_05640 PF00571 CBS domain ND442_05645 PF01545 Cation efflux family ND442_05645 PF16916 Dimerisation domain of Zinc Transporter ND442_05650 PF00005 ABC transporter ND442_05650 PF12848 ABC transporter ND442_05655 PF00899 ThiF family ND442_05660 PF00994 Probable molybdopterin binding domain ND442_05660 PF03453 MoeA N-terminal region (domain I and II) ND442_05660 PF03454 MoeA C-terminal region (domain IV) ND442_05670 PF00756 Putative esterase ND442_05675 PF00107 Zinc-binding dehydrogenase ND442_05675 PF08240 Alcohol dehydrogenase GroES-like domain ND442_05680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_05680 PF03466 LysR substrate binding domain ND442_05685 PF06779 Uncharacterised MFS-type transporter YbfB ND442_05690 PF01227 GTP cyclohydrolase I ND442_05695 PF04235 Protein of unknown function (DUF418) ND442_05700 PF00356 Bacterial regulatory proteins, lacI family ND442_05705 PF13407 Periplasmic binding protein domain ND442_05710 PF00005 ABC transporter ND442_05715 PF02653 Branched-chain amino acid transport system / permease component ND442_05720 PF02698 DUF218 domain ND442_05725 PF00390 Malic enzyme, N-terminal domain ND442_05725 PF03949 Malic enzyme, NAD binding domain ND442_05735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_05735 PF03466 LysR substrate binding domain ND442_05740 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ND442_05740 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND442_05745 PF04172 LrgB-like family ND442_05750 PF03788 LrgA family ND442_05760 PF01588 Putative tRNA binding domain ND442_05760 PF09334 tRNA synthetases class I (M) ND442_05765 PF10609 NUBPL iron-transfer P-loop NTPase ND442_05770 PF00485 Phosphoribulokinase / Uridine kinase family ND442_05775 PF00692 dUTPase ND442_05780 PF05170 AsmA family ND442_05785 PF03606 C4-dicarboxylate anaerobic carrier ND442_05790 PF00571 CBS domain ND442_05790 PF03471 Transporter associated domain ND442_05790 PF03741 Integral membrane protein TerC family ND442_05795 PF00483 Nucleotidyl transferase ND442_05800 PF00483 Nucleotidyl transferase ND442_05805 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ND442_05805 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ND442_05815 PF01502 Phosphoribosyl-AMP cyclohydrolase ND442_05815 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ND442_05820 PF00977 Histidine biosynthesis protein ND442_05825 PF00977 Histidine biosynthesis protein ND442_05830 PF00117 Glutamine amidotransferase class-I ND442_05835 PF00475 Imidazoleglycerol-phosphate dehydratase ND442_05840 PF00155 Aminotransferase class I and II ND442_05845 PF00815 Histidinol dehydrogenase ND442_05850 PF01634 ATP phosphoribosyltransferase ND442_05850 PF08029 HisG, C-terminal domain ND442_05860 PF01370 NAD dependent epimerase/dehydratase family ND442_05865 PF00043 Glutathione S-transferase, C-terminal domain ND442_05865 PF13417 Glutathione S-transferase, N-terminal domain ND442_05880 PF01053 Cys/Met metabolism PLP-dependent enzyme ND442_05885 PF00571 CBS domain ND442_05885 PF00291 Pyridoxal-phosphate dependent enzyme ND442_05890 PF07943 Penicillin-binding protein 5, C-terminal domain ND442_05890 PF00768 D-alanyl-D-alanine carboxypeptidase ND442_05895 PF03313 Serine dehydratase alpha chain ND442_05895 PF03315 Serine dehydratase beta chain ND442_05905 PF08220 DeoR-like helix-turn-helix domain ND442_05905 PF00455 DeoR C terminal sensor domain ND442_05910 PF01791 DeoC/LacD family aldolase ND442_05915 PF01569 PAP2 superfamily ND442_05925 PF06826 Predicted Permease Membrane Region ND442_05925 PF02080 TrkA-C domain ND442_05930 PF00462 Glutaredoxin ND442_05935 PF07214 Protein of unknown function (DUF1418) ND442_05940 PF10722 Putative bacterial sensory transduction regulator ND442_05945 PF13416 Bacterial extracellular solute-binding protein ND442_05950 PF00005 ABC transporter ND442_05950 PF08402 TOBE domain ND442_05955 PF00528 Binding-protein-dependent transport system inner membrane component ND442_05960 PF00528 Binding-protein-dependent transport system inner membrane component ND442_05965 PF10767 Protein of unknown function (DUF2593) ND442_05970 PF05958 tRNA (Uracil-5-)-methyltransferase ND442_05975 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND442_05980 PF00528 Binding-protein-dependent transport system inner membrane component ND442_05985 PF00528 Binding-protein-dependent transport system inner membrane component ND442_05990 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND442_05995 PF00005 ABC transporter ND442_06000 PF12883 Protein of unknown function (DUF3828) ND442_06005 PF01906 Putative heavy-metal-binding ND442_06010 PF01370 NAD dependent epimerase/dehydratase family ND442_06015 PF13460 NAD(P)H-binding ND442_06015 PF11066 Protein of unknown function (DUF2867) ND442_06020 PF01212 Beta-eliminating lyase ND442_06025 PF00175 Oxidoreductase NAD-binding domain ND442_06025 PF00111 2Fe-2S iron-sulfur cluster binding domain ND442_06025 PF00970 Oxidoreductase FAD-binding domain ND442_06030 PF03063 Prismane/CO dehydrogenase family ND442_06035 PF03956 Lysine exporter LysO ND442_06040 PF11398 Protein of unknown function (DUF2813) ND442_06045 PF04393 Protein of unknown function (DUF535) ND442_06050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND442_06055 PF00005 ABC transporter ND442_06055 PF02687 FtsX-like permease family ND442_06055 PF12704 MacB-like periplasmic core domain ND442_06060 PF00313 'Cold-shock' DNA-binding domain ND442_06065 PF02617 ATP-dependent Clp protease adaptor protein ClpS ND442_06070 PF00004 ATPase family associated with various cellular activities (AAA) ND442_06070 PF17871 AAA lid domain ND442_06070 PF02861 Clp amino terminal domain, pathogenicity island component ND442_06070 PF10431 C-terminal, D2-small domain, of ClpB protein ND442_06070 PF07724 AAA domain (Cdc48 subfamily) ND442_06075 PF01176 Translation initiation factor 1A / IF-1 ND442_06080 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ND442_06085 PF00005 ABC transporter ND442_06085 PF00664 ABC transporter transmembrane region ND442_06090 PF00664 ABC transporter transmembrane region ND442_06090 PF00005 ABC transporter ND442_06095 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND442_06100 PF01037 Lrp/AsnC ligand binding domain ND442_06105 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND442_06105 PF17854 FtsK alpha domain ND442_06105 PF09397 Ftsk gamma domain ND442_06105 PF01580 FtsK/SpoIIIE family ND442_06110 PF03548 Outer membrane lipoprotein carrier protein LolA ND442_06115 PF12002 MgsA AAA+ ATPase C terminal ND442_06115 PF00004 ATPase family associated with various cellular activities (AAA) ND442_06115 PF16193 AAA C-terminal domain ND442_06120 PF02403 Seryl-tRNA synthetase N-terminal domain ND442_06120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND442_06125 PF07690 Major Facilitator Superfamily ND442_06130 PF04055 Radical SAM superfamily ND442_06135 PF02901 Pyruvate formate lyase-like ND442_06135 PF01228 Glycine radical ND442_06140 PF01226 Formate/nitrite transporter ND442_06145 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ND442_06145 PF18381 YcaO cyclodehydratase C-terminal domain ND442_06150 PF00710 Asparaginase, N-terminal ND442_06150 PF17763 Glutaminase/Asparaginase C-terminal domain ND442_06155 PF00266 Aminotransferase class-V ND442_06160 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND442_06165 PF02224 Cytidylate kinase ND442_06170 PF00575 S1 RNA binding domain ND442_06175 PF00216 Bacterial DNA-binding protein ND442_06180 PF03772 Competence protein ND442_06180 PF00753 Metallo-beta-lactamase superfamily ND442_06185 PF00664 ABC transporter transmembrane region ND442_06185 PF00005 ABC transporter ND442_06190 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ND442_06195 PF07063 Domain of unknown function (DUF1338) ND442_06200 PF00313 'Cold-shock' DNA-binding domain ND442_06205 PF00313 'Cold-shock' DNA-binding domain ND442_06210 PF03966 Trm112p-like protein ND442_06215 PF02348 Cytidylyltransferase ND442_06220 PF01636 Phosphotransferase enzyme family ND442_06225 PF02698 DUF218 domain ND442_06230 PF13847 Methyltransferase domain ND442_06235 PF03882 MukF winged-helix domain ND442_06235 PF17193 MukF C-terminal domain ND442_06235 PF17192 MukF middle domain ND442_06240 PF04288 MukE-like family ND442_06245 PF04310 MukB N-terminal ND442_06245 PF16330 MukB hinge domain ND442_06250 PF01471 Putative peptidoglycan binding domain ND442_06250 PF03734 L,D-transpeptidase catalytic domain ND442_06255 PF05951 Bacterial protein of unknown function (DUF882) ND442_06260 PF00753 Metallo-beta-lactamase superfamily ND442_06265 PF00155 Aminotransferase class I and II ND442_06270 PF00267 Gram-negative porin ND442_06275 PF00152 tRNA synthetases class II (D, K and N) ND442_06275 PF01336 OB-fold nucleic acid binding domain ND442_06280 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ND442_06280 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ND442_06285 PF11940 Domain of unknown function (DUF3458) Ig-like fold ND442_06285 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ND442_06285 PF01433 Peptidase family M1 domain ND442_06290 PF01180 Dihydroorotate dehydrogenase ND442_06295 PF07126 Cell-division protein ZapC ND442_06300 PF00111 2Fe-2S iron-sulfur cluster binding domain ND442_06300 PF03476 MOSC N-terminal beta barrel domain ND442_06300 PF03473 MOSC domain ND442_06305 PF10672 S-adenosylmethionine-dependent methyltransferase ND442_06305 PF02926 THUMP domain ND442_06305 PF01170 Putative RNA methylase family UPF0020 ND442_06310 PF16326 ABC transporter C-terminal domain ND442_06310 PF12848 ABC transporter ND442_06310 PF00005 ABC transporter ND442_06315 PF04403 Paraquat-inducible protein A ND442_06320 PF02470 MlaD protein ND442_06325 PF03886 ABC-type transport auxiliary lipoprotein component ND442_06330 PF04957 Ribosome modulation factor ND442_06335 PF07977 FabA-like domain ND442_06340 PF13654 AAA domain ND442_06340 PF05362 Lon protease (S16) C-terminal proteolytic domain ND442_06345 PF06303 MatP N-terminal domain ND442_06345 PF17414 MatP C-terminal ribbon-helix-helix domain ND442_06350 PF01389 OmpA-like transmembrane domain ND442_06350 PF00691 OmpA family ND442_06355 PF03846 Cell division inhibitor SulA ND442_06360 PF04994 TfoX C-terminal domain ND442_06360 PF04993 TfoX N-terminal domain ND442_06365 PF12805 FUSC-like inner membrane protein yccS ND442_06370 PF03733 Inner membrane component domain ND442_06375 PF12462 DNA helicase IV / RNA helicase N terminal ND442_06375 PF00580 UvrD/REP helicase N-terminal domain ND442_06375 PF13361 UvrD-like helicase C-terminal domain ND442_06380 PF02142 MGS-like domain ND442_06385 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ND442_06390 PF13380 CoA binding domain ND442_06395 PF08755 Hemimethylated DNA-binding protein YccV like ND442_06400 PF10672 S-adenosylmethionine-dependent methyltransferase ND442_06400 PF17785 PUA-like domain ND442_06405 PF00708 Acylphosphatase ND442_06410 PF04358 DsrC like protein ND442_06420 PF00484 Carbonic anhydrase ND442_06425 PF02080 TrkA-C domain ND442_06425 PF00999 Sodium/hydrogen exchanger family ND442_06425 PF03471 Transporter associated domain ND442_06435 PF01757 Acyltransferase family ND442_06440 PF04349 Periplasmic glucan biosynthesis protein, MdoG ND442_06445 PF00535 Glycosyl transferase family 2 ND442_06455 PF01797 Transposase IS200 like ND442_06460 PF12323 Helix-turn-helix domain ND442_06460 PF01385 Probable transposase ND442_06460 PF07282 Putative transposase DNA-binding domain ND442_06465 PF00854 POT family ND442_06475 PF03279 Bacterial lipid A biosynthesis acyltransferase ND442_06480 PF00581 Rhodanese-like domain ND442_06480 PF12368 Rhodanase C-terminal ND442_06480 PF17773 UPF0176 acylphosphatase like domain ND442_06485 PF01594 AI-2E family transporter ND442_06490 PF00196 Bacterial regulatory proteins, luxR family ND442_06495 PF01266 FAD dependent oxidoreductase ND442_06500 PF13991 BssS protein family ND442_06505 PF06183 DinI-like family ND442_06510 PF01979 Amidohydrolase family ND442_06515 PF03992 Antibiotic biosynthesis monooxygenase ND442_06525 PF12111 Polyribonucleotide phosphorylase C terminal ND442_06525 PF10150 Ribonuclease E/G family ND442_06525 PF00575 S1 RNA binding domain ND442_06530 PF00849 RNA pseudouridylate synthase ND442_06530 PF01479 S4 domain ND442_06535 PF02545 Maf-like protein ND442_06540 PF02620 Large ribosomal RNA subunit accumulation protein YceD ND442_06545 PF01783 Ribosomal L32p protein family ND442_06550 PF02504 Fatty acid synthesis protein ND442_06555 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ND442_06555 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ND442_06560 PF00698 Acyl transferase domain ND442_06570 PF00550 Phosphopantetheine attachment site ND442_06575 PF00109 Beta-ketoacyl synthase, N-terminal domain ND442_06575 PF02801 Beta-ketoacyl synthase, C-terminal domain ND442_06580 PF01063 Amino-transferase class IV ND442_06585 PF02618 YceG-like family ND442_06590 PF02223 Thymidylate kinase ND442_06595 PF09115 DNA polymerase III, delta subunit, C terminal ND442_06600 PF01026 TatD related DNase ND442_06605 PF00367 phosphotransferase system, EIIB ND442_06605 PF02378 Phosphotransferase system, EIIC ND442_06610 PF01230 HIT domain ND442_06615 PF07233 Protein of unknown function (DUF1425) ND442_06620 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND442_06620 PF13036 Peptidoglycan-synthase activator LpoB ND442_06625 PF01636 Phosphotransferase enzyme family ND442_06630 PF00933 Glycosyl hydrolase family 3 N terminal domain ND442_06635 PF05728 Uncharacterised protein family (UPF0227) ND442_06640 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND442_06645 PF05433 Glycine zipper 2TM domain ND442_06650 PF02559 CarD-like/TRCF domain ND442_06650 PF00270 DEAD/DEAH box helicase ND442_06650 PF00271 Helicase conserved C-terminal domain ND442_06650 PF03461 TRCF domain ND442_06650 PF17757 UvrB interaction domain ND442_06655 PF12704 MacB-like periplasmic core domain ND442_06655 PF02687 FtsX-like permease family ND442_06660 PF00005 ABC transporter ND442_06665 PF12704 MacB-like periplasmic core domain ND442_06665 PF02687 FtsX-like permease family ND442_06670 PF00480 ROK family ND442_06675 PF02146 Sir2 family ND442_06680 PF01546 Peptidase family M20/M25/M40 ND442_06680 PF07687 Peptidase dimerisation domain ND442_06685 PF08007 Cupin superfamily protein ND442_06690 PF08918 PhoQ Sensor ND442_06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_06695 PF00072 Response regulator receiver domain ND442_06695 PF00486 Transcriptional regulatory protein, C terminal ND442_06705 PF00206 Lyase ND442_06705 PF08328 Adenylosuccinate lyase C-terminal ND442_06710 PF04356 Protein of unknown function (DUF489) ND442_06720 PF00293 NUDIX domain ND442_06725 PF00849 RNA pseudouridylate synthase ND442_06730 PF00180 Isocitrate/isopropylmalate dehydrogenase ND442_06735 PF03472 Autoinducer binding domain ND442_06735 PF00196 Bacterial regulatory proteins, luxR family ND442_06740 PF00765 Autoinducer synthase ND442_06745 PF00232 Glycosyl hydrolase family 1 ND442_06750 PF01432 Peptidase family M3 ND442_06755 PF02203 Tar ligand binding domain homologue ND442_06755 PF00672 HAMP domain ND442_06755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND442_06775 PF01797 Transposase IS200 like ND442_06780 PF07282 Putative transposase DNA-binding domain ND442_06780 PF01385 Probable transposase ND442_06780 PF12323 Helix-turn-helix domain ND442_06790 PF00072 Response regulator receiver domain ND442_06795 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND442_06795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_06795 PF00989 PAS fold ND442_06795 PF17203 Single cache domain 3 ND442_06800 PF00939 Sodium:sulfate symporter transmembrane region ND442_06805 PF08548 Peptidase M10 serralysin C terminal ND442_06805 PF00413 Matrixin ND442_06805 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ND442_06810 PF02974 Protease inhibitor Inh ND442_06815 PF00005 ABC transporter ND442_06815 PF00664 ABC transporter transmembrane region ND442_06820 PF00529 HlyD membrane-fusion protein of T1SS ND442_06825 PF02321 Outer membrane efflux protein ND442_06840 PF12833 Helix-turn-helix domain ND442_06840 PF02311 AraC-like ligand binding domain ND442_06845 PF02562 PhoH-like protein ND442_06850 PF01699 Sodium/calcium exchanger protein ND442_06855 PF08021 Siderophore-interacting FAD-binding domain ND442_06855 PF04954 Siderophore-interacting protein ND442_06860 PF00672 HAMP domain ND442_06860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_06860 PF07730 Histidine kinase ND442_06860 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ND442_06870 PF02322 Cytochrome bd terminal oxidase subunit II ND442_06875 PF01654 Cytochrome bd terminal oxidase subunit I ND442_06880 PF00392 Bacterial regulatory proteins, gntR family ND442_06880 PF00155 Aminotransferase class I and II ND442_06885 PF00202 Aminotransferase class-III ND442_06890 PF04958 Arginine N-succinyltransferase beta subunit ND442_06895 PF00171 Aldehyde dehydrogenase family ND442_06900 PF04996 Succinylarginine dihydrolase ND442_06910 PF00267 Gram-negative porin ND442_06920 PF01979 Amidohydrolase family ND442_06925 PF00392 Bacterial regulatory proteins, gntR family ND442_06925 PF07702 UTRA domain ND442_06930 PF01979 Amidohydrolase family ND442_06935 PF05962 HutD ND442_06940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_06940 PF03466 LysR substrate binding domain ND442_06950 PF03824 High-affinity nickel-transport protein ND442_06955 PF07503 HypF finger ND442_06955 PF00708 Acylphosphatase ND442_06955 PF17788 HypF Kae1-like domain ND442_06955 PF01300 Telomere recombination ND442_06960 PF00384 Molybdopterin oxidoreductase ND442_06960 PF01568 Molydopterin dinucleotide binding domain ND442_06960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND442_06965 PF12800 4Fe-4S binding domain ND442_06965 PF13247 4Fe-4S dicluster domain ND442_06970 PF01750 Hydrogenase maturation protease ND442_06975 PF07450 Formate hydrogenlyase maturation protein HycH ND442_06980 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND442_06985 PF12838 4Fe-4S dicluster domain ND442_06990 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND442_06990 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND442_06990 PF00374 Nickel-dependent hydrogenase ND442_06995 PF00146 NADH dehydrogenase ND442_07000 PF00361 Proton-conducting membrane transporter ND442_07005 PF13247 4Fe-4S dicluster domain ND442_07010 PF11046 Transcriptional repressor of hyc and hyp operons ND442_07015 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ND442_07020 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND442_07025 PF01455 HupF/HypC family ND442_07030 PF01924 Hydrogenase formation hypA family ND442_07035 PF00586 AIR synthase related protein, N-terminal domain ND442_07035 PF02769 AIR synthase related protein, C-terminal domain ND442_07040 PF01590 GAF domain ND442_07040 PF00158 Sigma-54 interaction domain ND442_07040 PF02954 Bacterial regulatory protein, Fis family ND442_07050 PF13954 PapC N-terminal domain ND442_07050 PF00577 Outer membrane usher protein ND442_07055 PF02753 Pili assembly chaperone PapD, C-terminal domain ND442_07055 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND442_07070 PF12833 Helix-turn-helix domain ND442_07075 PF01926 50S ribosome-binding GTPase ND442_07075 PF06071 Protein of unknown function (DUF933) ND442_07085 PF01195 Peptidyl-tRNA hydrolase ND442_07090 PF10762 Protein of unknown function (DUF2583) ND442_07095 PF14572 Phosphoribosyl synthetase-associated domain ND442_07095 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ND442_07100 PF00288 GHMP kinases N terminal domain ND442_07100 PF08544 GHMP kinases C terminal ND442_07105 PF03550 Outer membrane lipoprotein LolB ND442_07110 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ND442_07110 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ND442_07110 PF01488 Shikimate / quinate 5-dehydrogenase ND442_07115 PF03462 PCRF domain ND442_07115 PF00472 RF-1 domain ND442_07120 PF13847 Methyltransferase domain ND442_07120 PF17827 PrmC N-terminal domain ND442_07125 PF04247 Invasion gene expression up-regulator, SirB ND442_07130 PF13369 Transglutaminase-like superfamily ND442_07135 PF00793 DAHP synthetase I family ND442_07140 PF01740 STAS domain ND442_07140 PF00916 Sulfate permease family ND442_07145 PF00990 Diguanylate cyclase, GGDEF domain ND442_07155 PF03009 Glycerophosphoryl diester phosphodiesterase family ND442_07165 PF00854 POT family ND442_07170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND442_07175 PF02811 PHP domain ND442_07180 PF02613 Nitrate reductase delta subunit ND442_07185 PF07273 Protein of unknown function (DUF1439) ND442_07195 PF07690 Major Facilitator Superfamily ND442_07200 PF13302 Acetyltransferase (GNAT) domain ND442_07205 PF04337 Protein of unknown function, DUF480 ND442_07210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND442_07215 PF03023 Lipid II flippase MurJ ND442_07220 PF08479 POTRA domain, ShlB-type ND442_07220 PF17287 POTRA domain ND442_07220 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND442_07225 PF05860 haemagglutination activity domain ND442_07225 PF13332 Hemagglutinin repeat ND442_07235 PF03485 Arginyl tRNA synthetase N terminal domain ND442_07235 PF05746 DALR anticodon binding domain ND442_07235 PF00750 tRNA synthetases class I (R) ND442_07240 PF06185 YecM protein ND442_07245 PF03932 CutC family ND442_07250 PF08003 Protein of unknown function (DUF1698) ND442_07255 PF13649 Methyltransferase domain ND442_07260 PF01124 MAPEG family ND442_07265 PF01904 Protein of unknown function DUF72 ND442_07275 PF01336 OB-fold nucleic acid binding domain ND442_07275 PF00152 tRNA synthetases class II (D, K and N) ND442_07275 PF02938 GAD domain ND442_07280 PF00293 NUDIX domain ND442_07285 PF01709 Transcriptional regulator ND442_07290 PF02075 Crossover junction endodeoxyribonuclease RuvC ND442_07295 PF07499 RuvA, C-terminal domain ND442_07295 PF01330 RuvA N terminal domain ND442_07300 PF17864 RuvB AAA lid domain ND442_07300 PF05491 RuvB C-terminal winged helix domain ND442_07300 PF05496 Holliday junction DNA helicase RuvB P-loop domain ND442_07305 PF00854 POT family ND442_07310 PF00950 ABC 3 transport family ND442_07315 PF00005 ABC transporter ND442_07320 PF01297 Zinc-uptake complex component A periplasmic ND442_07325 PF01476 LysM domain ND442_07325 PF08525 Opacity-associated protein A N-terminal motif ND442_07325 PF01551 Peptidase family M23 ND442_07330 PF03279 Bacterial lipid A biosynthesis acyltransferase ND442_07335 PF02887 Pyruvate kinase, alpha/beta domain ND442_07335 PF00224 Pyruvate kinase, barrel domain ND442_07340 PF01418 Helix-turn-helix domain, rpiR family ND442_07340 PF01380 SIS domain ND442_07345 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ND442_07345 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ND442_07350 PF01081 KDPG and KHG aldolase ND442_07355 PF00893 Small Multidrug Resistance protein ND442_07360 PF00893 Small Multidrug Resistance protein ND442_07365 PF01042 Endoribonuclease L-PSP ND442_07370 PF04851 Type III restriction enzyme, res subunit ND442_07370 PF13307 Helicase C-terminal domain ND442_07375 PF00814 Glycoprotease family ND442_07380 PF03843 Outer membrane lipoprotein Slp family ND442_07385 PF00501 AMP-binding enzyme ND442_07385 PF13193 AMP-binding enzyme C-terminal domain ND442_07390 PF00570 HRDC domain ND442_07390 PF01612 3'-5' exonuclease ND442_07395 PF03776 Septum formation topological specificity factor MinE ND442_07400 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ND442_07405 PF03775 Septum formation inhibitor MinC, C-terminal domain ND442_07405 PF05209 Septum formation inhibitor MinC, N-terminal domain ND442_07410 PF05166 YcgL domain ND442_07415 PF01557 Fumarylacetoacetate (FAA) hydrolase family ND442_07420 PF03692 Putative zinc- or iron-chelating domain ND442_07435 PF02600 Disulfide bond formation protein DsbB ND442_07440 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ND442_07445 PF07840 FadR C-terminal domain ND442_07445 PF00392 Bacterial regulatory proteins, gntR family ND442_07450 PF04293 SpoVR like protein ND442_07455 PF01266 FAD dependent oxidoreductase ND442_07460 PF00842 Alanine racemase, C-terminal domain ND442_07460 PF01168 Alanine racemase, N-terminal domain ND442_07465 PF07690 Major Facilitator Superfamily ND442_07475 PF00563 EAL domain ND442_07475 PF00990 Diguanylate cyclase, GGDEF domain ND442_07475 PF13426 PAS domain ND442_07480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_07480 PF03466 LysR substrate binding domain ND442_07485 PF03306 Alpha-acetolactate decarboxylase ND442_07490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND442_07490 PF00205 Thiamine pyrophosphate enzyme, central domain ND442_07490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND442_07495 PF04285 Protein of unknown function (DUF444) ND442_07500 PF08298 PrkA AAA domain ND442_07500 PF06798 PrkA serine protein kinase C-terminal domain ND442_07510 PF06629 MltA-interacting protein MipA ND442_07515 PF00884 Sulfatase ND442_07520 PF01263 Aldose 1-epimerase ND442_07525 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND442_07525 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND442_07530 PF01641 SelR domain ND442_07535 PF07023 Protein of unknown function (DUF1315) ND442_07540 PF00857 Isochorismatase family ND442_07545 PF00710 Asparaginase, N-terminal ND442_07545 PF17763 Glutaminase/Asparaginase C-terminal domain ND442_07550 PF01343 Peptidase family S49 ND442_07555 PF00881 Nitroreductase family ND442_07560 PF02769 AIR synthase related protein, C-terminal domain ND442_07560 PF00586 AIR synthase related protein, N-terminal domain ND442_07565 PF01751 Toprim domain ND442_07565 PF01131 DNA topoisomerase ND442_07570 PF07383 Protein of unknown function (DUF1496) ND442_07575 PF00293 NUDIX domain ND442_07580 PF03372 Endonuclease/Exonuclease/phosphatase family ND442_07590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_07590 PF03466 LysR substrate binding domain ND442_07610 PF01842 ACT domain ND442_07610 PF00551 Formyl transferase ND442_07615 PF02810 SEC-C motif ND442_07620 PF01734 Patatin-like phospholipase ND442_07625 PF00072 Response regulator receiver domain ND442_07630 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND442_07630 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND442_07630 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND442_07635 PF00816 H-NS histone family ND442_07640 PF00265 Thymidine kinase ND442_07645 PF00171 Aldehyde dehydrogenase family ND442_07645 PF00465 Iron-containing alcohol dehydrogenase ND442_07655 PF01914 MarC family integral membrane protein ND442_07660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND442_07665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND442_07670 PF00528 Binding-protein-dependent transport system inner membrane component ND442_07675 PF00528 Binding-protein-dependent transport system inner membrane component ND442_07675 PF12911 N-terminal TM domain of oligopeptide transport permease C ND442_07680 PF00005 ABC transporter ND442_07680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND442_07685 PF00005 ABC transporter ND442_07685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND442_07690 PF04269 Protein of unknown function, DUF440 ND442_07695 PF13396 Phospholipase_D-nuclease N-terminal ND442_07695 PF13091 PLD-like domain ND442_07715 PF03795 YCII-related domain ND442_07730 PF00486 Transcriptional regulatory protein, C terminal ND442_07740 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND442_07740 PF02753 Pili assembly chaperone PapD, C-terminal domain ND442_07745 PF13954 PapC N-terminal domain ND442_07745 PF13953 PapC C-terminal domain ND442_07745 PF00577 Outer membrane usher protein ND442_07765 PF03544 Gram-negative bacterial TonB protein C-terminal ND442_07770 PF03061 Thioesterase superfamily ND442_07775 PF04279 Intracellular septation protein A ND442_07780 PF01740 STAS domain ND442_07780 PF00916 Sulfate permease family ND442_07790 PF03692 Putative zinc- or iron-chelating domain ND442_07795 PF03922 OmpW family ND442_07805 PF00290 Tryptophan synthase alpha chain ND442_07810 PF00291 Pyridoxal-phosphate dependent enzyme ND442_07815 PF00218 Indole-3-glycerol phosphate synthase ND442_07815 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ND442_07820 PF02885 Glycosyl transferase family, helical bundle domain ND442_07820 PF00591 Glycosyl transferase family, a/b domain ND442_07825 PF00117 Glutamine amidotransferase class-I ND442_07830 PF04715 Anthranilate synthase component I, N terminal region ND442_07830 PF00425 chorismate binding enzyme ND442_07835 PF02811 PHP domain ND442_07840 PF01300 Telomere recombination ND442_07860 PF00849 RNA pseudouridylate synthase ND442_07860 PF01479 S4 domain ND442_07865 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ND442_07870 PF00106 short chain dehydrogenase ND442_07875 PF01343 Peptidase family S49 ND442_07875 PF08496 Peptidase family S49 N-terminal ND442_07880 PF10692 Protein of unknown function (DUF2498) ND442_07885 PF01131 DNA topoisomerase ND442_07885 PF01751 Toprim domain ND442_07885 PF01396 Topoisomerase DNA binding C4 zinc finger ND442_07885 PF08272 Topoisomerase I zinc-ribbon-like ND442_07890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_07890 PF03466 LysR substrate binding domain ND442_07905 PF00330 Aconitase family (aconitate hydratase) ND442_07905 PF00694 Aconitase C-terminal domain ND442_07910 PF00925 GTP cyclohydrolase II ND442_07915 PF01569 PAP2 superfamily ND442_07920 PF06305 Lipopolysaccharide assembly protein A domain ND442_07925 PF18073 Rubredoxin metal binding domain ND442_07935 PF07338 Protein of unknown function (DUF1471) ND442_07940 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND442_07945 PF01253 Translation initiation factor SUI1 ND442_07950 PF05433 Glycine zipper 2TM domain ND442_07955 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND442_07960 PF08448 PAS fold ND442_07960 PF00990 Diguanylate cyclase, GGDEF domain ND442_07960 PF00563 EAL domain ND442_07960 PF08447 PAS fold ND442_07960 PF13426 PAS domain ND442_07960 PF05231 MASE1 ND442_07965 PF08206 Ribonuclease B OB domain ND442_07965 PF00773 RNB domain ND442_07965 PF00575 S1 RNA binding domain ND442_07970 PF10576 Iron-sulfur binding domain of endonuclease III ND442_07970 PF00633 Helix-hairpin-helix motif ND442_07970 PF00730 HhH-GPD superfamily base excision DNA repair protein ND442_07975 PF02508 Rnf-Nqr subunit, membrane protein ND442_07980 PF04205 FMN-binding domain ND442_07985 PF03116 NQR2, RnfD, RnfE family ND442_07990 PF12833 Helix-turn-helix domain ND442_07990 PF06445 GyrI-like small molecule binding domain ND442_07995 PF13237 4Fe-4S dicluster domain ND442_07995 PF13375 RnfC Barrel sandwich hybrid domain ND442_07995 PF10531 SLBB domain ND442_07995 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND442_08000 PF04060 Putative Fe-S cluster ND442_08005 PF02508 Rnf-Nqr subunit, membrane protein ND442_08010 PF10754 Protein of unknown function (DUF2569) ND442_08015 PF01268 Formate--tetrahydrofolate ligase ND442_08020 PF09313 Domain of unknown function (DUF1971) ND442_08020 PF03848 Tellurite resistance protein TehB ND442_08025 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ND442_08025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND442_08030 PF13593 SBF-like CPA transporter family (DUF4137) ND442_08035 PF00962 Adenosine/AMP deaminase ND442_08040 PF06097 Bacterial protein of unknown function (DUF945) ND442_08045 PF01238 Phosphomannose isomerase type I ND442_08050 PF00206 Lyase ND442_08050 PF10415 Fumarase C C-terminus ND442_08055 PF05472 DNA replication terminus site-binding protein (Ter protein) ND442_08060 PF00480 ROK family ND442_08070 PF00654 Voltage gated chloride channel ND442_08075 PF06649 Protein of unknown function (DUF1161) ND442_08080 PF06932 Protein of unknown function (DUF1283) ND442_08085 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ND442_08090 PF00106 short chain dehydrogenase ND442_08095 PF01510 N-acetylmuramoyl-L-alanine amidase ND442_08115 PF01048 Phosphorylase superfamily ND442_08115 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ND442_08155 PF13419 Haloacid dehalogenase-like hydrolase ND442_08165 PF06445 GyrI-like small molecule binding domain ND442_08170 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND442_08170 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ND442_08175 PF00027 Cyclic nucleotide-binding domain ND442_08175 PF13545 Crp-like helix-turn-helix domain ND442_08180 PF00582 Universal stress protein family ND442_08190 PF00455 DeoR C terminal sensor domain ND442_08190 PF08220 DeoR-like helix-turn-helix domain ND442_08195 PF03611 PTS system sugar-specific permease component ND442_08200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND442_08205 PF00596 Class II Aldolase and Adducin N-terminal domain ND442_08210 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND442_08215 PF01261 Xylose isomerase-like TIM barrel ND442_08220 PF02233 NAD(P) transhydrogenase beta subunit ND442_08225 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ND442_08225 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ND442_08225 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ND442_08230 PF07338 Protein of unknown function (DUF1471) ND442_08235 PF13520 Amino acid permease ND442_08245 PF00486 Transcriptional regulatory protein, C terminal ND442_08245 PF00072 Response regulator receiver domain ND442_08250 PF00672 HAMP domain ND442_08250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_08250 PF00512 His Kinase A (phospho-acceptor) domain ND442_08255 PF00080 Copper/zinc superoxide dismutase (SODC) ND442_08260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND442_08265 PF12833 Helix-turn-helix domain ND442_08270 PF01161 Phosphatidylethanolamine-binding protein ND442_08275 PF06392 Acid shock protein repeat ND442_08280 PF00089 Trypsin ND442_08285 PF00270 DEAD/DEAH box helicase ND442_08285 PF11898 Domain of unknown function (DUF3418) ND442_08285 PF04408 Helicase associated domain (HA2) ND442_08285 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ND442_08285 PF00271 Helicase conserved C-terminal domain ND442_08290 PF02525 Flavodoxin-like fold ND442_08295 PF07027 Protein of unknown function (DUF1318) ND442_08300 PF13617 YnbE-like lipoprotein ND442_08310 PF11739 Dicarboxylate transport ND442_08315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND442_08315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND442_08320 PF03724 META domain ND442_08325 PF03891 Domain of unknown function (DUF333) ND442_08330 PF02308 MgtC family ND442_08335 PF00893 Small Multidrug Resistance protein ND442_08340 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ND442_08340 PF10371 Domain of unknown function ND442_08340 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ND442_08340 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ND442_08340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND442_08345 PF01171 PP-loop family ND442_08350 PF01544 CorA-like Mg2+ transporter protein ND442_08355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND442_08360 PF00246 Zinc carboxypeptidase ND442_08365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ND442_08365 PF13378 Enolase C-terminal domain-like ND442_08370 PF08534 Redoxin ND442_08375 PF18024 Helix-turn-helix domain ND442_08375 PF00158 Sigma-54 interaction domain ND442_08380 PF09722 Protein of unknown function (DUF2384) ND442_08385 PF08808 RES domain ND442_08390 PF05128 Domain of unknown function (DUF697) ND442_08395 PF04317 YcjX-like family, DUF463 ND442_08400 PF09584 Phage shock protein PspD (Phageshock_PspD) ND442_08405 PF04024 PspC domain ND442_08410 PF06667 Phage shock protein B ND442_08415 PF04012 PspA/IM30 family ND442_08420 PF02954 Bacterial regulatory protein, Fis family ND442_08420 PF00158 Sigma-54 interaction domain ND442_08430 PF02917 Pertussis toxin, subunit 1 ND442_08435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND442_08440 PF00528 Binding-protein-dependent transport system inner membrane component ND442_08445 PF12911 N-terminal TM domain of oligopeptide transport permease C ND442_08445 PF00528 Binding-protein-dependent transport system inner membrane component ND442_08450 PF00005 ABC transporter ND442_08450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND442_08455 PF00005 ABC transporter ND442_08465 PF00854 POT family ND442_08475 PF01556 DnaJ C terminal domain ND442_08475 PF00226 DnaJ domain ND442_08485 PF04893 Yip1 domain ND442_08495 PF11656 YjbD family (DUF3811) ND442_08500 PF00043 Glutathione S-transferase, C-terminal domain ND442_08500 PF02798 Glutathione S-transferase, N-terminal domain ND442_08505 PF08543 Phosphomethylpyrimidine kinase ND442_08510 PF01479 S4 domain ND442_08510 PF00579 tRNA synthetases class I (W and Y) ND442_08515 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ND442_08515 PF01243 Pyridoxamine 5'-phosphate oxidase ND442_08520 PF03702 Anhydro-N-acetylmuramic acid kinase ND442_08525 PF00440 Bacterial regulatory proteins, tetR family ND442_08525 PF16925 Tetracyclin repressor-like, C-terminal domain ND442_08530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND442_08535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND442_08540 PF00929 Exonuclease ND442_08545 PF00462 Glutaredoxin ND442_08550 PF00877 NlpC/P60 family ND442_08555 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND442_08555 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND442_08565 PF00356 Bacterial regulatory proteins, lacI family ND442_08570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_08570 PF03466 LysR substrate binding domain ND442_08575 PF07690 Major Facilitator Superfamily ND442_08585 PF00677 Lumazine binding domain ND442_08590 PF01554 MatE ND442_08610 PF02887 Pyruvate kinase, alpha/beta domain ND442_08610 PF00224 Pyruvate kinase, barrel domain ND442_08615 PF00239 Resolvase, N terminal domain ND442_08615 PF02796 Helix-turn-helix domain of resolvase ND442_08625 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND442_08630 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND442_08685 PF17482 Phage tail sheath C-terminal domain ND442_08685 PF04984 Phage tail sheath protein subtilisin-like domain ND442_08710 PF10124 Mu-like prophage major head subunit gpT ND442_08735 PF06074 Protein of unknown function (DUF935) ND442_08790 PF06252 Protein of unknown function (DUF1018) ND442_08855 PF13693 Winged helix-turn-helix DNA-binding ND442_08865 PF04728 Lipoprotein leucine-zipper ND442_08870 PF03734 L,D-transpeptidase catalytic domain ND442_08870 PF01476 LysM domain ND442_08870 PF17969 L,D-transpeptidase C-terminal domain ND442_08875 PF02657 Fe-S metabolism associated domain ND442_08880 PF00266 Aminotransferase class-V ND442_08885 PF01458 Uncharacterized protein family (UPF0051) ND442_08890 PF00005 ABC transporter ND442_08895 PF01458 Uncharacterized protein family (UPF0051) ND442_08900 PF01521 Iron-sulphur cluster biosynthesis ND442_08905 PF03061 Thioesterase superfamily ND442_08910 PF02913 FAD linked oxidases, C-terminal domain ND442_08910 PF01565 FAD binding domain ND442_08910 PF13183 4Fe-4S dicluster domain ND442_08915 PF01594 AI-2E family transporter ND442_08925 PF00391 PEP-utilising enzyme, mobile domain ND442_08925 PF02896 PEP-utilising enzyme, TIM barrel domain ND442_08925 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ND442_08930 PF03618 Kinase/pyrophosphorylase ND442_08935 PF00793 DAHP synthetase I family ND442_08940 PF10636 Hemin uptake protein hemP ND442_08945 PF07715 TonB-dependent Receptor Plug Domain ND442_08945 PF00593 TonB dependent receptor ND442_08950 PF05171 Haemin-degrading HemS.ChuX domain ND442_08955 PF01497 Periplasmic binding protein ND442_08960 PF01032 FecCD transport family ND442_08965 PF00005 ABC transporter ND442_08970 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ND442_08975 PF10437 Bacterial lipoate protein ligase C-terminus ND442_08975 PF03099 Biotin/lipoate A/B protein ligase family ND442_08980 PF00877 NlpC/P60 family ND442_08990 PF00892 EamA-like transporter family ND442_08995 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ND442_09000 PF01522 Polysaccharide deacetylase ND442_09005 PF01370 NAD dependent epimerase/dehydratase family ND442_09005 PF02911 Formyl transferase, C-terminal domain ND442_09005 PF00551 Formyl transferase ND442_09010 PF00535 Glycosyl transferase family 2 ND442_09015 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND442_09020 PF00005 ABC transporter ND442_09025 PF01032 FecCD transport family ND442_09030 PF13411 MerR HTH family regulatory protein ND442_09030 PF00145 C-5 cytosine-specific DNA methylase ND442_09035 PF09553 Eco47II restriction endonuclease ND442_09070 PF02661 Fic/DOC family ND442_09085 PF05154 TM2 domain ND442_09090 PF00216 Bacterial DNA-binding protein ND442_09095 PF01588 Putative tRNA binding domain ND442_09095 PF03483 B3/4 domain ND442_09095 PF03484 tRNA synthetase B5 domain ND442_09095 PF03147 Ferredoxin-fold anticodon binding domain ND442_09095 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ND442_09100 PF01409 tRNA synthetases class II core domain (F) ND442_09100 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ND442_09105 PF00453 Ribosomal protein L20 ND442_09110 PF01632 Ribosomal protein L35 ND442_09115 PF00707 Translation initiation factor IF-3, C-terminal domain ND442_09115 PF05198 Translation initiation factor IF-3, N-terminal domain ND442_09120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND442_09120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND442_09120 PF02824 TGS domain ND442_09120 PF03129 Anticodon binding domain ND442_09150 PF01914 MarC family integral membrane protein ND442_09155 PF01464 Transglycosylase SLT domain ND442_09160 PF01297 Zinc-uptake complex component A periplasmic ND442_09165 PF00005 ABC transporter ND442_09170 PF00950 ABC 3 transport family ND442_09175 PF00950 ABC 3 transport family ND442_09180 PF03881 Fructosamine kinase ND442_09185 PF14002 YniB-like protein ND442_09190 PF13419 Haloacid dehalogenase-like hydrolase ND442_09195 PF04307 LexA-binding, inner membrane-associated putative hydrolase ND442_09200 PF00375 Sodium:dicarboxylate symporter family ND442_09205 PF01510 N-acetylmuramoyl-L-alanine amidase ND442_09210 PF09339 IclR helix-turn-helix domain ND442_09210 PF01614 Bacterial transcriptional regulator ND442_09215 PF07690 Major Facilitator Superfamily ND442_09225 PF01435 Peptidase family M48 ND442_09230 PF11818 C-terminal domain of tail specific protease (DUF3340) ND442_09230 PF00595 PDZ domain ND442_09230 PF03572 Peptidase family S41 ND442_09230 PF17804 Tail specific protease N-terminal domain ND442_09235 PF17516 ProQ C-terminal domain ND442_09235 PF04352 ProQ/FINO family ND442_09240 PF13185 GAF domain ND442_09245 PF04403 Paraquat-inducible protein A ND442_09250 PF02470 MlaD protein ND442_09255 PF00563 EAL domain ND442_09255 PF01590 GAF domain ND442_09255 PF00990 Diguanylate cyclase, GGDEF domain ND442_09255 PF00360 Phytochrome region ND442_09260 PF07351 Protein of unknown function (DUF1480) ND442_09285 PF05643 Putative bacterial lipoprotein (DUF799) ND442_09295 PF03783 Curli production assembly/transport component CsgG ND442_09300 PF10753 Toxin GhoT_OrtT ND442_09320 PF00144 Beta-lactamase ND442_09465 PF00959 Phage lysozyme ND442_09470 PF04971 Bacteriophage P21 holin S ND442_09490 PF07102 Protein of unknown function (DUF1364) ND442_09500 PF05063 MT-A70 ND442_09505 PF01555 DNA methylase ND442_09515 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND442_09515 PF17854 FtsK alpha domain ND442_09515 PF09397 Ftsk gamma domain ND442_09515 PF01580 FtsK/SpoIIIE family ND442_09555 PF01381 Helix-turn-helix ND442_09555 PF00717 Peptidase S24-like ND442_09620 PF07825 Excisionase-like protein ND442_09630 PF10709 Protein of unknown function (DUF2511) ND442_09635 PF05425 Copper resistance protein D ND442_09640 PF04234 CopC domain ND442_09645 PF00210 Ferritin-like domain ND442_09650 PF06440 DNA polymerase III, theta subunit ND442_09655 PF00561 alpha/beta hydrolase fold ND442_09660 PF00929 Exonuclease ND442_09665 PF00326 Prolyl oligopeptidase family ND442_09665 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ND442_09670 PF13995 YebF-like protein ND442_09675 PF04266 ASCH domain ND442_09680 PF07130 YebG protein ND442_09685 PF00270 DEAD/DEAH box helicase ND442_09685 PF00271 Helicase conserved C-terminal domain ND442_09685 PF03880 DbpA RNA binding domain ND442_09690 PF02222 ATP-grasp domain ND442_09695 PF03701 Uncharacterised protein family (UPF0181) ND442_09700 PF04715 Anthranilate synthase component I, N terminal region ND442_09700 PF00425 chorismate binding enzyme ND442_09705 PF00293 NUDIX domain ND442_09710 PF03313 Serine dehydratase alpha chain ND442_09710 PF03315 Serine dehydratase beta chain ND442_09715 PF03741 Integral membrane protein TerC family ND442_09715 PF03471 Transporter associated domain ND442_09720 PF03610 PTS system fructose IIA component ND442_09720 PF03830 PTS system sorbose subfamily IIB component ND442_09725 PF03609 PTS system sorbose-specific iic component ND442_09730 PF03613 PTS system mannose/fructose/sorbose family IID component ND442_09735 PF06173 Protein of unknown function (DUF986) ND442_09740 PF02659 Putative manganese efflux pump ND442_09745 PF02441 Flavoprotein ND442_09760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND442_09760 PF02770 Acyl-CoA dehydrogenase, middle domain ND442_09760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND442_09770 PF05199 GMC oxidoreductase ND442_09770 PF00732 GMC oxidoreductase ND442_09775 PF13193 AMP-binding enzyme C-terminal domain ND442_09775 PF00550 Phosphopantetheine attachment site ND442_09775 PF00668 Condensation domain ND442_09775 PF00501 AMP-binding enzyme ND442_09780 PF07690 Major Facilitator Superfamily ND442_09800 PF13847 Methyltransferase domain ND442_09805 PF03717 Penicillin-binding Protein dimerisation domain ND442_09805 PF00905 Penicillin binding protein transpeptidase domain ND442_09810 PF02578 Multi-copper polyphenol oxidoreductase laccase ND442_09815 PF00313 'Cold-shock' DNA-binding domain ND442_09820 PF10736 Protein of unknown function (DUF2627) ND442_09825 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ND442_09830 PF00324 Amino acid permease ND442_09845 PF13974 YebO-like protein ND442_09850 PF13998 MgrB protein ND442_09855 PF13996 YobH-like protein ND442_09860 PF10964 Protein of unknown function (DUF2766) ND442_09865 PF12833 Helix-turn-helix domain ND442_09880 PF13520 Amino acid permease ND442_09885 PF00005 ABC transporter ND442_09885 PF00664 ABC transporter transmembrane region ND442_09895 PF00990 Diguanylate cyclase, GGDEF domain ND442_09895 PF01590 GAF domain ND442_09895 PF00563 EAL domain ND442_09895 PF00360 Phytochrome region ND442_09900 PF03372 Endonuclease/Exonuclease/phosphatase family ND442_09910 PF06411 HdeA/HdeB family ND442_09915 PF07478 D-ala D-ala ligase C-terminus ND442_09915 PF01820 D-ala D-ala ligase N-terminus ND442_09930 PF08241 Methyltransferase domain ND442_09935 PF00313 'Cold-shock' DNA-binding domain ND442_09940 PF00313 'Cold-shock' DNA-binding domain ND442_09945 PF00313 'Cold-shock' DNA-binding domain ND442_09955 PF04794 YdjC-like protein ND442_09960 PF07883 Cupin domain ND442_09960 PF12833 Helix-turn-helix domain ND442_09965 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ND442_09970 PF00232 Glycosyl hydrolase family 1 ND442_09975 PF02378 Phosphotransferase system, EIIC ND442_09980 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND442_09985 PF00849 RNA pseudouridylate synthase ND442_09985 PF01479 S4 domain ND442_09995 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ND442_10000 PF03553 Na+/H+ antiporter family ND442_10010 PF13520 Amino acid permease ND442_10025 PF00849 RNA pseudouridylate synthase ND442_10030 PF00282 Pyridoxal-dependent decarboxylase conserved domain ND442_10035 PF13520 Amino acid permease ND442_10040 PF04960 Glutaminase ND442_10070 PF13673 Acetyltransferase (GNAT) domain ND442_10080 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ND442_10080 PF00034 Cytochrome c ND442_10090 PF00528 Binding-protein-dependent transport system inner membrane component ND442_10095 PF00005 ABC transporter ND442_10105 PF00672 HAMP domain ND442_10105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND442_10105 PF02203 Tar ligand binding domain homologue ND442_10110 PF00665 Integrase core domain ND442_10110 PF13333 Integrase core domain ND442_10110 PF13276 HTH-like domain ND442_10130 PF01066 CDP-alcohol phosphatidyltransferase ND442_10135 PF02151 UvrB/uvrC motif ND442_10135 PF01541 GIY-YIG catalytic domain ND442_10135 PF08459 UvrC Helix-hairpin-helix N-terminal ND442_10140 PF00196 Bacterial regulatory proteins, luxR family ND442_10140 PF00072 Response regulator receiver domain ND442_10145 PF10769 Protein of unknown function (DUF2594) ND442_10165 PF00324 Amino acid permease ND442_10170 PF01276 Orn/Lys/Arg decarboxylase, major domain ND442_10170 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND442_10170 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND442_10175 PF13520 Amino acid permease ND442_10180 PF18500 CadC C-terminal domain 1 ND442_10180 PF00486 Transcriptional regulatory protein, C terminal ND442_10185 PF00474 Sodium:solute symporter family ND442_10190 PF00171 Aldehyde dehydrogenase family ND442_10190 PF01619 Proline dehydrogenase ND442_10190 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ND442_10190 PF14850 DNA-binding domain of Proline dehydrogenase ND442_10195 PF00005 ABC transporter ND442_10200 PF00528 Binding-protein-dependent transport system inner membrane component ND442_10205 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND442_10210 PF00291 Pyridoxal-phosphate dependent enzyme ND442_10215 PF02899 Phage integrase, N-terminal SAM-like domain ND442_10220 PF04542 Sigma-70 region 2 ND442_10220 PF04539 Sigma-70 region 3 ND442_10220 PF04545 Sigma-70, region 4 ND442_10225 PF08884 Flagellin D3 domain ND442_10225 PF00700 Bacterial flagellin C-terminal helical region ND442_10225 PF00669 Bacterial flagellin N-terminal helical region ND442_10230 PF08884 Flagellin D3 domain ND442_10230 PF00669 Bacterial flagellin N-terminal helical region ND442_10230 PF00700 Bacterial flagellin C-terminal helical region ND442_10235 PF00700 Bacterial flagellin C-terminal helical region ND442_10235 PF08884 Flagellin D3 domain ND442_10235 PF00669 Bacterial flagellin N-terminal helical region ND442_10240 PF07196 Flagellin hook IN motif ND442_10240 PF07195 Flagellar hook-associated protein 2 C-terminus ND442_10240 PF02465 Flagellar hook-associated protein 2 N-terminus ND442_10245 PF02561 Flagellar protein FliS ND442_10250 PF05400 Flagellar protein FliT ND442_10255 PF12833 Helix-turn-helix domain ND442_10260 PF01966 HD domain ND442_10265 PF02254 TrkA-N domain ND442_10265 PF07885 Ion channel ND442_10270 PF01223 DNA/RNA non-specific endonuclease ND442_10280 PF02049 Flagellar hook-basal body complex protein FliE ND442_10285 PF08345 Flagellar M-ring protein C-terminal ND442_10285 PF01514 Secretory protein of YscJ/FliF family ND442_10290 PF14841 FliG middle domain ND442_10290 PF01706 FliG C-terminal domain ND442_10290 PF14842 FliG N-terminal domain ND442_10295 PF02108 Flagellar assembly protein FliH ND442_10300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND442_10300 PF18269 T3SS EscN ATPase C-terminal domain ND442_10305 PF02050 Flagellar FliJ protein ND442_10310 PF02120 Flagellar hook-length control protein FliK ND442_10315 PF03748 Flagellar basal body-associated protein FliL ND442_10320 PF02154 Flagellar motor switch protein FliM ND442_10320 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND442_10325 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND442_10325 PF16973 Flagellar motor switch protein FliN N-terminal ND442_10330 PF04347 Flagellar biosynthesis protein, FliO ND442_10335 PF00813 FliP family ND442_10340 PF01313 Bacterial export proteins, family 3 ND442_10345 PF01311 Bacterial export proteins, family 1 ND442_10350 PF00669 Bacterial flagellin N-terminal helical region ND442_10355 PF00460 Flagella basal body rod protein ND442_10355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND442_10360 PF10135 Rod binding protein ND442_10360 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ND442_10365 PF02119 Flagellar P-ring protein ND442_10370 PF02107 Flagellar L-ring protein ND442_10375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND442_10375 PF00460 Flagella basal body rod protein ND442_10380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND442_10380 PF00460 Flagella basal body rod protein ND442_10385 PF00460 Flagella basal body rod protein ND442_10385 PF07559 Flagellar basal body protein FlaE ND442_10385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND442_10390 PF03963 Flagellar hook capping protein - N-terminal region ND442_10390 PF13860 FlgD Ig-like domain ND442_10390 PF13861 FlgD Tudor-like domain ND442_10395 PF00460 Flagella basal body rod protein ND442_10395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND442_10400 PF00460 Flagella basal body rod protein ND442_10405 PF17656 FlgA N-terminal domain ND442_10405 PF13144 Chaperone for flagella basal body P-ring formation ND442_10410 PF04316 Anti-sigma-28 factor, FlgM ND442_10415 PF05130 FlgN protein ND442_10420 PF06366 Flagellar protein FlhE ND442_10425 PF00771 FHIPEP family ND442_10430 PF01312 FlhB HrpN YscU SpaS Family ND442_10435 PF01483 Proprotein convertase P-domain ND442_10435 PF00082 Subtilase family ND442_10440 PF00196 Bacterial regulatory proteins, luxR family ND442_10450 PF00419 Fimbrial protein ND442_10455 PF00577 Outer membrane usher protein ND442_10455 PF13954 PapC N-terminal domain ND442_10455 PF13953 PapC C-terminal domain ND442_10460 PF02753 Pili assembly chaperone PapD, C-terminal domain ND442_10460 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND442_10470 PF00419 Fimbrial protein ND442_10500 PF04344 Chemotaxis phosphatase, CheZ ND442_10505 PF00072 Response regulator receiver domain ND442_10510 PF00072 Response regulator receiver domain ND442_10510 PF01339 CheB methylesterase ND442_10515 PF03705 CheR methyltransferase, all-alpha domain ND442_10515 PF01739 CheR methyltransferase, SAM binding domain ND442_10520 PF00672 HAMP domain ND442_10520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND442_10520 PF02203 Tar ligand binding domain homologue ND442_10525 PF00672 HAMP domain ND442_10525 PF02203 Tar ligand binding domain homologue ND442_10525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND442_10530 PF01584 CheW-like domain ND442_10535 PF01584 CheW-like domain ND442_10535 PF09078 CheY binding ND442_10535 PF02895 Signal transducing histidine kinase, homodimeric domain ND442_10535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_10535 PF01627 Hpt domain ND442_10540 PF13677 Membrane MotB of proton-channel complex MotA/MotB ND442_10540 PF00691 OmpA family ND442_10545 PF01618 MotA/TolQ/ExbB proton channel family ND442_10550 PF05280 Flagellar transcriptional activator (FlhC) ND442_10555 PF05247 Flagellar transcriptional activator (FlhD) ND442_10560 PF00582 Universal stress protein family ND442_10565 PF02308 MgtC family ND442_10570 PF00672 HAMP domain ND442_10570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND442_10570 PF02203 Tar ligand binding domain homologue ND442_10575 PF10781 Dextransucrase DSRB ND442_10580 PF00313 'Cold-shock' DNA-binding domain ND442_10585 PF00356 Bacterial regulatory proteins, lacI family ND442_10590 PF02929 Beta galactosidase small chain ND442_10590 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND442_10590 PF00703 Glycosyl hydrolases family 2 ND442_10590 PF16353 Domain of unknown function(DUF4981) ND442_10590 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND442_10595 PF00550 Phosphopantetheine attachment site ND442_10595 PF00698 Acyl transferase domain ND442_10595 PF08240 Alcohol dehydrogenase GroES-like domain ND442_10595 PF00107 Zinc-binding dehydrogenase ND442_10595 PF16197 Ketoacyl-synthetase C-terminal extension ND442_10595 PF00109 Beta-ketoacyl synthase, N-terminal domain ND442_10595 PF02801 Beta-ketoacyl synthase, C-terminal domain ND442_10595 PF08659 KR domain ND442_10595 PF14765 Polyketide synthase dehydratase ND442_10600 PF10777 Inner membrane protein YlaC ND442_10610 PF14001 YdfZ protein ND442_10620 PF06167 Glucose-regulated metallo-peptidase M90 ND442_10630 PF13356 Arm DNA-binding domain ND442_10630 PF00589 Phage integrase family ND442_10645 PF13693 Winged helix-turn-helix DNA-binding ND442_10680 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ND442_10700 PF04335 VirB8 protein ND442_10705 PF03524 Conjugal transfer protein ND442_10710 PF03743 Bacterial conjugation TrbI-like protein ND442_10715 PF00437 Type II/IV secretion system protein ND442_10730 PF18818 Metallopeptidase superfamily domain ND442_10730 PF08401 Domain of unknown function (DUF1738) ND442_10785 PF01648 4'-phosphopantetheinyl transferase superfamily ND442_10785 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ND442_10790 PF00939 Sodium:sulfate symporter transmembrane region ND442_10795 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ND442_10800 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase ND442_10805 PF04223 Citrate lyase, alpha subunit (CitF) ND442_10810 PF03328 HpcH/HpaI aldolase/citrate lyase family ND442_10815 PF06857 Malonate decarboxylase delta subunit (MdcD) ND442_10820 PF08218 Citrate lyase ligase C-terminal domain ND442_10825 PF17203 Single cache domain 3 ND442_10825 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND442_10825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_10825 PF00989 PAS fold ND442_10830 PF12431 Transcriptional regulator ND442_10830 PF00072 Response regulator receiver domain ND442_10835 PF00196 Bacterial regulatory proteins, luxR family ND442_10835 PF00072 Response regulator receiver domain ND442_10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_10840 PF07730 Histidine kinase ND442_10840 PF05231 MASE1 ND442_10845 PF07690 Major Facilitator Superfamily ND442_10855 PF00528 Binding-protein-dependent transport system inner membrane component ND442_10860 PF00005 ABC transporter ND442_10860 PF08402 TOBE domain ND442_10875 PF04363 Protein of unknown function (DUF496) ND442_10880 PF04632 Fusaric acid resistance protein family ND442_10890 PF00929 Exonuclease ND442_10890 PF08411 Exonuclease C-terminal ND442_10895 PF13520 Amino acid permease ND442_10900 PF07715 TonB-dependent Receptor Plug Domain ND442_10900 PF00593 TonB dependent receptor ND442_10905 PF00005 ABC transporter ND442_10910 PF01032 FecCD transport family ND442_10920 PF00324 Amino acid permease ND442_10925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_10925 PF03466 LysR substrate binding domain ND442_10935 PF03601 Conserved hypothetical protein 698 ND442_10940 PF01261 Xylose isomerase-like TIM barrel ND442_10945 PF02378 Phosphotransferase system, EIIC ND442_10945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND442_10950 PF00294 pfkB family carbohydrate kinase ND442_10955 PF00381 PTS HPr component phosphorylation site ND442_10955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND442_10960 PF00293 NUDIX domain ND442_10965 PF03264 NapC/NirT cytochrome c family, N-terminal region ND442_10970 PF00384 Molybdopterin oxidoreductase ND442_10970 PF18364 Molybdopterin oxidoreductase N-terminal domain ND442_10970 PF01568 Molydopterin dinucleotide binding domain ND442_10975 PF03692 Putative zinc- or iron-chelating domain ND442_10980 PF03222 Tryptophan/tyrosine permease family ND442_10990 PF01132 Elongation factor P (EF-P) OB domain ND442_10990 PF08207 Elongation factor P (EF-P) KOW-like domain ND442_10990 PF09285 Elongation factor P, C-terminal ND442_10995 PF03786 D-mannonate dehydratase (UxuA) ND442_11000 PF01232 Mannitol dehydrogenase Rossmann domain ND442_11000 PF08125 Mannitol dehydrogenase C-terminal domain ND442_11010 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND442_11010 PF07683 Cobalamin synthesis protein cobW C-terminal domain ND442_11015 PF01569 PAP2 superfamily ND442_11020 PF00877 NlpC/P60 family ND442_11025 PF12792 CSS motif domain associated with EAL ND442_11025 PF00563 EAL domain ND442_11030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND442_11035 PF00528 Binding-protein-dependent transport system inner membrane component ND442_11040 PF12911 N-terminal TM domain of oligopeptide transport permease C ND442_11040 PF00528 Binding-protein-dependent transport system inner membrane component ND442_11045 PF00005 ABC transporter ND442_11045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND442_11050 PF13989 YejG-like protein ND442_11055 PF07690 Major Facilitator Superfamily ND442_11060 PF01479 S4 domain ND442_11060 PF00849 RNA pseudouridylate synthase ND442_11065 PF04851 Type III restriction enzyme, res subunit ND442_11065 PF00271 Helicase conserved C-terminal domain ND442_11070 PF01386 Ribosomal L25p family ND442_11075 PF04245 37-kD nucleoid-associated bacterial protein ND442_11080 PF07208 Protein of unknown function (DUF1414) ND442_11085 PF00884 Sulfatase ND442_11085 PF11893 Domain of unknown function (DUF3413) ND442_11100 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND442_11110 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) ND442_11115 PF04865 Baseplate J-like protein ND442_11170 PF13693 Winged helix-turn-helix DNA-binding ND442_11235 PF06252 Protein of unknown function (DUF1018) ND442_11290 PF06074 Protein of unknown function (DUF935) ND442_11315 PF10124 Mu-like prophage major head subunit gpT ND442_11340 PF17482 Phage tail sheath C-terminal domain ND442_11340 PF04984 Phage tail sheath protein subtilisin-like domain ND442_11390 PF07484 Phage Tail Collar Domain ND442_11390 PF08400 Prophage tail fibre N-terminal ND442_11390 PF03335 Phage tail fibre repeat ND442_11395 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND442_11400 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND442_11405 PF02796 Helix-turn-helix domain of resolvase ND442_11405 PF00239 Resolvase, N terminal domain ND442_11460 PF03354 Phage Terminase ND442_11480 PF03245 Bacteriophage Rz lysis protein ND442_11485 PF13539 D-alanyl-D-alanine carboxypeptidase ND442_11515 PF03793 PASTA domain ND442_11515 PF00069 Protein kinase domain ND442_11520 PF01555 DNA methylase ND442_11530 PF06147 Protein of unknown function (DUF968) ND442_11545 PF05869 DNA N-6-adenine-methyltransferase (Dam) ND442_11550 PF03354 Phage Terminase ND442_11585 PF10065 Uncharacterized conserved protein (DUF2303) ND442_11630 PF06183 DinI-like family ND442_11635 PF12706 Beta-lactamase superfamily domain ND442_11640 PF00144 Beta-lactamase ND442_11645 PF13302 Acetyltransferase (GNAT) domain ND442_11660 PF00267 Gram-negative porin ND442_11665 PF07690 Major Facilitator Superfamily ND442_11670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_11670 PF01627 Hpt domain ND442_11670 PF16359 RcsD-ABL domain ND442_11675 PF00196 Bacterial regulatory proteins, luxR family ND442_11675 PF00072 Response regulator receiver domain ND442_11680 PF09456 RcsC Alpha-Beta-Loop (ABL) ND442_11680 PF00072 Response regulator receiver domain ND442_11680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_11680 PF00512 His Kinase A (phospho-acceptor) domain ND442_11685 PF00521 DNA gyrase/topoisomerase IV, subunit A ND442_11685 PF03989 DNA gyrase C-terminal domain, beta-propeller ND442_11695 PF03477 ATP cone domain ND442_11695 PF02867 Ribonucleotide reductase, barrel domain ND442_11695 PF00317 Ribonucleotide reductase, all-alpha domain ND442_11700 PF00268 Ribonucleotide reductase, small chain ND442_11705 PF00111 2Fe-2S iron-sulfur cluster binding domain ND442_11715 PF03974 Ecotin ND442_11720 PF00994 Probable molybdopterin binding domain ND442_11725 PF04138 GtrA-like protein ND442_11730 PF00535 Glycosyl transferase family 2 ND442_11740 PF03222 Tryptophan/tyrosine permease family ND442_11745 PF07437 YfaZ precursor ND442_11750 PF00199 Catalase ND442_11750 PF06628 Catalase-related immune-responsive ND442_11755 PF00501 AMP-binding enzyme ND442_11755 PF13193 AMP-binding enzyme C-terminal domain ND442_11760 PF13378 Enolase C-terminal domain-like ND442_11765 PF00378 Enoyl-CoA hydratase/isomerase ND442_11770 PF12697 Alpha/beta hydrolase family ND442_11775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND442_11775 PF16582 Middle domain of thiamine pyrophosphate ND442_11775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND442_11780 PF00425 chorismate binding enzyme ND442_11785 PF05957 Bacterial protein of unknown function (DUF883) ND442_11790 PF06496 Protein of unknown function (DUF1097) ND442_11795 PF00361 Proton-conducting membrane transporter ND442_11800 PF00361 Proton-conducting membrane transporter ND442_11805 PF00361 Proton-conducting membrane transporter ND442_11805 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ND442_11810 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ND442_11815 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ND442_11820 PF12838 4Fe-4S dicluster domain ND442_11825 PF00146 NADH dehydrogenase ND442_11830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND442_11830 PF00384 Molybdopterin oxidoreductase ND442_11830 PF01568 Molydopterin dinucleotide binding domain ND442_11830 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ND442_11835 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND442_11835 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ND442_11835 PF10531 SLBB domain ND442_11845 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND442_11845 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND442_11850 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND442_11855 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ND442_11860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_11860 PF03466 LysR substrate binding domain ND442_11865 PF00155 Aminotransferase class I and II ND442_11875 PF03600 Citrate transporter ND442_11875 PF02080 TrkA-C domain ND442_11885 PF03887 YfbU domain ND442_11890 PF04217 Protein of unknown function, DUF412 ND442_11895 PF00871 Acetokinase family ND442_11900 PF01515 Phosphate acetyl/butaryl transferase ND442_11900 PF07085 DRTGG domain ND442_11905 PF00356 Bacterial regulatory proteins, lacI family ND442_11905 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND442_11910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND442_11920 PF03611 PTS system sugar-specific permease component ND442_11925 PF00293 NUDIX domain ND442_11930 PF12850 Calcineurin-like phosphoesterase superfamily domain ND442_11945 PF00043 Glutathione S-transferase, C-terminal domain ND442_11945 PF02798 Glutathione S-transferase, N-terminal domain ND442_11950 PF08338 Domain of unknown function (DUF1731) ND442_11950 PF01370 NAD dependent epimerase/dehydratase family ND442_11955 PF00005 ABC transporter ND442_11960 PF00528 Binding-protein-dependent transport system inner membrane component ND442_11965 PF00528 Binding-protein-dependent transport system inner membrane component ND442_11970 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND442_11980 PF02441 Flavoprotein ND442_11985 PF00156 Phosphoribosyl transferase domain ND442_11990 PF02674 Colicin V production protein ND442_11995 PF05036 Sporulation related domain ND442_12000 PF02875 Mur ligase family, glutamate ligase domain ND442_12000 PF08245 Mur ligase middle domain ND442_12005 PF01039 Carboxyl transferase domain ND442_12005 PF17848 Acetyl-coA carboxylase zinc finger domain ND442_12010 PF09335 SNARE associated Golgi protein ND442_12015 PF01416 tRNA pseudouridine synthase ND442_12020 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND442_12020 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND442_12025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND442_12025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND442_12025 PF11890 Domain of unknown function (DUF3410) ND442_12045 PF00155 Aminotransferase class I and II ND442_12050 PF00578 AhpC/TSA family ND442_12080 PF00109 Beta-ketoacyl synthase, N-terminal domain ND442_12080 PF02801 Beta-ketoacyl synthase, C-terminal domain ND442_12085 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ND442_12085 PF01266 FAD dependent oxidoreductase ND442_12090 PF08891 YfcL protein ND442_12095 PF04315 Elongation factor P hydroxylase ND442_12100 PF01925 Sulfite exporter TauE/SafE ND442_12105 PF03411 Penicillin-insensitive murein endopeptidase ND442_12110 PF01264 Chorismate synthase ND442_12115 PF05175 Methyltransferase small domain ND442_12120 PF01713 Smr domain ND442_12125 PF00300 Histidine phosphatase superfamily (branch 1) ND442_12130 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND442_12130 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND442_12130 PF00378 Enoyl-CoA hydratase/isomerase ND442_12135 PF00108 Thiolase, N-terminal domain ND442_12135 PF02803 Thiolase, C-terminal domain ND442_12140 PF04175 Protein of unknown function (DUF406) ND442_12145 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ND442_12150 PF04333 MlaA lipoprotein ND442_12155 PF03918 Cytochrome C biogenesis protein ND442_12160 PF03918 Cytochrome C biogenesis protein ND442_12165 PF08534 Redoxin ND442_12170 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ND442_12170 PF01578 Cytochrome C assembly protein ND442_12175 PF03100 CcmE ND442_12180 PF04995 Heme exporter protein D (CcmD) ND442_12185 PF01578 Cytochrome C assembly protein ND442_12190 PF03379 CcmB protein ND442_12195 PF00005 ABC transporter ND442_12205 PF13356 Arm DNA-binding domain ND442_12205 PF14659 Phage integrase, N-terminal SAM-like domain ND442_12205 PF00589 Phage integrase family ND442_12210 PF01119 DNA mismatch repair protein, C-terminal domain ND442_12210 PF08676 MutL C terminal dimerisation domain ND442_12265 PF03831 PhnA domain ND442_12265 PF08274 PhnA Zinc-Ribbon ND442_12270 PF13406 Transglycosylase SLT domain ND442_12285 PF01292 Prokaryotic cytochrome b561 ND442_12290 PF00155 Aminotransferase class I and II ND442_12295 PF07350 Protein of unknown function (DUF1479) ND442_12300 PF07694 5TMR of 5TMR-LYT ND442_12300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_12300 PF06580 Histidine kinase ND442_12305 PF04397 LytTr DNA-binding domain ND442_12305 PF00072 Response regulator receiver domain ND442_12310 PF07690 Major Facilitator Superfamily ND442_12315 PF02685 Glucokinase ND442_12325 PF03466 LysR substrate binding domain ND442_12325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_12335 PF01566 Natural resistance-associated macrophage protein ND442_12340 PF07662 Na+ dependent nucleoside transporter C-terminus ND442_12340 PF01773 Na+ dependent nucleoside transporter N-terminus ND442_12340 PF07670 Nucleoside recognition ND442_12375 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND442_12400 PF12843 Putative quorum-sensing-regulated virulence factor ND442_12405 PF00533 BRCA1 C Terminus (BRCT) domain ND442_12405 PF01653 NAD-dependent DNA ligase adenylation domain ND442_12405 PF03120 NAD-dependent DNA ligase OB-fold domain ND442_12405 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ND442_12405 PF12826 Helix-hairpin-helix motif ND442_12410 PF04354 ZipA, C-terminal FtsZ-binding domain ND442_12420 PF00291 Pyridoxal-phosphate dependent enzyme ND442_12425 PF00381 PTS HPr component phosphorylation site ND442_12430 PF05524 PEP-utilising enzyme, N-terminal ND442_12430 PF00391 PEP-utilising enzyme, mobile domain ND442_12430 PF02896 PEP-utilising enzyme, TIM barrel domain ND442_12435 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND442_12440 PF00291 Pyridoxal-phosphate dependent enzyme ND442_12445 PF00005 ABC transporter ND442_12450 PF00528 Binding-protein-dependent transport system inner membrane component ND442_12455 PF00528 Binding-protein-dependent transport system inner membrane component ND442_12465 PF07690 Major Facilitator Superfamily ND442_12470 PF01418 Helix-turn-helix domain, rpiR family ND442_12470 PF01380 SIS domain ND442_12475 PF04074 YhcH/YjgK/YiaL ND442_12480 PF00480 ROK family ND442_12485 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ND442_12490 PF00701 Dihydrodipicolinate synthetase family ND442_12495 PF04261 Dyp-type peroxidase family ND442_12500 PF06572 Protein of unknown function (DUF1131) ND442_12505 PF04076 Bacterial OB fold (BOF) protein ND442_12555 PF00583 Acetyltransferase (GNAT) family ND442_12560 PF01218 Coproporphyrinogen III oxidase ND442_12565 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ND442_12570 PF00390 Malic enzyme, N-terminal domain ND442_12570 PF03949 Malic enzyme, NAD binding domain ND442_12570 PF01515 Phosphate acetyl/butaryl transferase ND442_12575 PF00293 NUDIX domain ND442_12580 PF03264 NapC/NirT cytochrome c family, N-terminal region ND442_12585 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ND442_12590 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND442_12590 PF01568 Molydopterin dinucleotide binding domain ND442_12590 PF00384 Molybdopterin oxidoreductase ND442_12590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND442_12595 PF03927 NapD protein ND442_12600 PF13187 4Fe-4S dicluster domain ND442_12600 PF12800 4Fe-4S binding domain ND442_12600 PF00037 4Fe-4S binding domain ND442_12605 PF00196 Bacterial regulatory proteins, luxR family ND442_12605 PF00072 Response regulator receiver domain ND442_12615 PF00873 AcrB/AcrD/AcrF family ND442_12625 PF01817 Chorismate mutase type II ND442_12630 PF03960 ArsC family ND442_12635 PF07687 Peptidase dimerisation domain ND442_12635 PF01546 Peptidase family M20/M25/M40 ND442_12640 PF02557 D-alanyl-D-alanine carboxypeptidase ND442_12645 PF13980 Uncharacterised protein family (UPF0370) ND442_12650 PF02230 Phospholipase/Carboxylesterase ND442_12655 PF08351 Domain of unknown function (DUF1726) ND442_12655 PF13718 GNAT acetyltransferase 2 ND442_12655 PF05127 Helicase ND442_12655 PF17176 tRNA-binding domain ND442_12660 PF04284 Protein of unknown function (DUF441) ND442_12665 PF01259 SAICAR synthetase ND442_12670 PF06804 NlpB/DapX lipoprotein ND442_12675 PF00701 Dihydrodipicolinate synthetase family ND442_12680 PF01842 ACT domain ND442_12685 PF00578 AhpC/TSA family ND442_12690 PF01594 AI-2E family transporter ND442_12695 PF01435 Peptidase family M48 ND442_12695 PF07720 Tetratricopeptide repeat ND442_12700 PF03960 ArsC family ND442_12705 PF00308 Bacterial dnaA protein ND442_12710 PF00860 Permease family ND442_12720 PF02769 AIR synthase related protein, C-terminal domain ND442_12720 PF00586 AIR synthase related protein, N-terminal domain ND442_12725 PF00551 Formyl transferase ND442_12730 PF13302 Acetyltransferase (GNAT) domain ND442_12735 PF00005 ABC transporter ND442_12740 PF00528 Binding-protein-dependent transport system inner membrane component ND442_12745 PF00528 Binding-protein-dependent transport system inner membrane component ND442_12750 PF02503 Polyphosphate kinase middle domain ND442_12750 PF13090 Polyphosphate kinase C-terminal domain 2 ND442_12750 PF17941 Polyphosphate kinase C-terminal domain 1 ND442_12750 PF13089 Polyphosphate kinase N-terminal domain ND442_12755 PF02541 Ppx/GppA phosphatase family ND442_12765 PF01769 Divalent cation transporter ND442_12765 PF00571 CBS domain ND442_12765 PF03448 MgtE intracellular N domain ND442_12770 PF00012 Hsp70 protein ND442_12780 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND442_12780 PF02753 Pili assembly chaperone PapD, C-terminal domain ND442_12785 PF13954 PapC N-terminal domain ND442_12785 PF00577 Outer membrane usher protein ND442_12785 PF13953 PapC C-terminal domain ND442_12800 PF13533 Biotin-lipoyl like ND442_12805 PF00873 AcrB/AcrD/AcrF family ND442_12810 PF00873 AcrB/AcrD/AcrF family ND442_12815 PF07690 Major Facilitator Superfamily ND442_12820 PF00512 His Kinase A (phospho-acceptor) domain ND442_12820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_12820 PF00672 HAMP domain ND442_12825 PF00072 Response regulator receiver domain ND442_12825 PF00486 Transcriptional regulatory protein, C terminal ND442_12830 PF07411 Domain of unknown function (DUF1508) ND442_12835 PF01136 Peptidase family U32 ND442_12835 PF16325 Peptidase family U32 C-terminal domain ND442_12840 PF00781 Diacylglycerol kinase catalytic domain ND442_12855 PF08543 Phosphomethylpyrimidine kinase ND442_12870 PF00958 GMP synthase C terminal domain ND442_12870 PF02540 NAD synthase ND442_12870 PF00117 Glutamine amidotransferase class-I ND442_12875 PF00478 IMP dehydrogenase / GMP reductase domain ND442_12875 PF00571 CBS domain ND442_12880 PF13742 OB-fold nucleic acid binding domain ND442_12880 PF02601 Exonuclease VII, large subunit ND442_12885 PF07191 zinc-ribbons ND442_12890 PF01926 50S ribosome-binding GTPase ND442_12890 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ND442_12895 PF13360 PQQ-like domain ND442_12900 PF09976 Tetratricopeptide repeat-like domain ND442_12905 PF13393 Histidyl-tRNA synthetase ND442_12905 PF03129 Anticodon binding domain ND442_12910 PF04551 GcpE protein ND442_12915 PF13464 Domain of unknown function (DUF4115) ND442_12925 PF04055 Radical SAM superfamily ND442_12930 PF00334 Nucleoside diphosphate kinase ND442_12940 PF06832 Penicillin-Binding Protein C-terminus Family ND442_12940 PF00912 Transglycosylase ND442_12940 PF00905 Penicillin binding protein transpeptidase domain ND442_12945 PF00207 Alpha-2-macroglobulin family ND442_12945 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain ND442_12945 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ND442_12945 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ND442_12945 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ND442_12945 PF17962 Bacterial macroglobulin domain 6 ND442_12945 PF01835 MG2 domain ND442_12945 PF07678 A-macroglobulin TED domain ND442_12945 PF07703 Alpha-2-macroglobulin bait region domain ND442_12950 PF07179 SseB protein N-terminal domain ND442_12950 PF14581 SseB protein C-terminal domain ND442_12955 PF12404 Peptidase ND442_12955 PF00883 Cytosol aminopeptidase family, catalytic domain ND442_12960 PF04384 Iron-sulphur cluster assembly ND442_12965 PF00111 2Fe-2S iron-sulfur cluster binding domain ND442_12970 PF00012 Hsp70 protein ND442_12975 PF07743 HSCB C-terminal oligomerisation domain ND442_12975 PF00226 DnaJ domain ND442_12980 PF01521 Iron-sulphur cluster biosynthesis ND442_12985 PF01592 NifU-like N terminal domain ND442_12990 PF00266 Aminotransferase class-V ND442_12995 PF02082 Transcriptional regulator ND442_13000 PF00588 SpoU rRNA Methylase family ND442_13005 PF00459 Inositol monophosphatase family ND442_13010 PF03824 High-affinity nickel-transport protein ND442_13015 PF06226 Protein of unknown function (DUF1007) ND442_13020 PF00874 PRD domain ND442_13025 PF12832 MFS_1 like family ND442_13030 PF00464 Serine hydroxymethyltransferase ND442_13035 PF00970 Oxidoreductase FAD-binding domain ND442_13035 PF00042 Globin ND442_13035 PF00175 Oxidoreductase NAD-binding domain ND442_13040 PF14502 Helix-turn-helix domain ND442_13040 PF14503 YhfZ C-terminal domain ND442_13050 PF01168 Alanine racemase, N-terminal domain ND442_13055 PF02126 Phosphotriesterase family ND442_13060 PF10941 Protein of unknown function DUF2620 ND442_13065 PF10797 Protein of unknown function ND442_13070 PF00543 Nitrogen regulatory protein P-II ND442_13075 PF02540 NAD synthase ND442_13075 PF00795 Carbon-nitrogen hydrolase ND442_13080 PF00072 Response regulator receiver domain ND442_13080 PF00158 Sigma-54 interaction domain ND442_13085 PF13942 YfhG lipoprotein ND442_13090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_13090 PF00512 His Kinase A (phospho-acceptor) domain ND442_13100 PF02769 AIR synthase related protein, C-terminal domain ND442_13100 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ND442_13100 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ND442_13105 PF01464 Transglycosylase SLT domain ND442_13105 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND442_13110 PF14437 MafB19-like deaminase ND442_13120 PF02378 Phosphotransferase system, EIIC ND442_13120 PF00367 phosphotransferase system, EIIB ND442_13125 PF01380 SIS domain ND442_13130 PF01418 Helix-turn-helix domain, rpiR family ND442_13130 PF01380 SIS domain ND442_13135 PF12838 4Fe-4S dicluster domain ND442_13140 PF01648 4'-phosphopantetheinyl transferase superfamily ND442_13145 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ND442_13150 PF02565 Recombination protein O C terminal ND442_13150 PF11967 Recombination protein O N terminal ND442_13155 PF07650 KH domain ND442_13155 PF01926 50S ribosome-binding GTPase ND442_13160 PF00035 Double-stranded RNA binding motif ND442_13160 PF14622 Ribonuclease-III-like ND442_13165 PF10502 Signal peptidase, peptidase S26 ND442_13170 PF00009 Elongation factor Tu GTP binding domain ND442_13170 PF03144 Elongation factor Tu domain 2 ND442_13170 PF06421 GTP-binding protein LepA C-terminus ND442_13170 PF00679 Elongation factor G C-terminus ND442_13180 PF03888 MucB/RseB N-terminal domain ND442_13180 PF17188 MucB/RseB C-terminal domain ND442_13185 PF03873 Anti sigma-E protein RseA, C-terminal domain ND442_13185 PF03872 Anti sigma-E protein RseA, N-terminal domain ND442_13190 PF04542 Sigma-70 region 2 ND442_13190 PF08281 Sigma-70, region 4 ND442_13195 PF00890 FAD binding domain ND442_13195 PF02910 Fumarate reductase flavoprotein C-term ND442_13200 PF05175 Methyltransferase small domain ND442_13205 PF00270 DEAD/DEAH box helicase ND442_13205 PF00271 Helicase conserved C-terminal domain ND442_13210 PF12796 Ankyrin repeats (3 copies) ND442_13220 PF01228 Glycine radical ND442_13225 PF03167 Uracil DNA glycosylase superfamily ND442_13230 PF01025 GrpE ND442_13235 PF01513 ATP-NAD kinase ND442_13240 PF02463 RecF/RecN/SMC N terminal domain ND442_13245 PF04355 SmpA / OmlA family ND442_13250 PF03658 RnfH family Ubiquitin ND442_13255 PF03364 Polyketide cyclase / dehydrase and lipid transport ND442_13260 PF01668 SmpB protein ND442_13270 PF00589 Phage integrase family ND442_13270 PF13356 Arm DNA-binding domain ND442_13300 PF01926 50S ribosome-binding GTPase ND442_13305 PF08220 DeoR-like helix-turn-helix domain ND442_13305 PF13280 WYL domain ND442_13330 PF06067 Domain of unknown function (DUF932) ND442_13335 PF03230 Antirestriction protein ND442_13340 PF04002 RadC-like JAB domain ND442_13345 PF06174 Protein of unknown function (DUF987) ND442_13350 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A ND442_13355 PF06755 CbtA_toxin of type IV toxin-antitoxin system ND442_13395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND442_13395 PF02753 Pili assembly chaperone PapD, C-terminal domain ND442_13400 PF13954 PapC N-terminal domain ND442_13400 PF00577 Outer membrane usher protein ND442_13400 PF13953 PapC C-terminal domain ND442_13425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_13425 PF03466 LysR substrate binding domain ND442_13440 PF01527 Transposase ND442_13450 PF18413 Neuraminidase-like domain ND442_13450 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND442_13450 PF18413 Neuraminidase-like domain ND442_13450 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND442_13460 PF12255 Insecticide toxin TcdB middle/C-terminal region ND442_13460 PF12256 Insecticide toxin TcdB middle/N-terminal region ND442_13460 PF03534 Salmonella virulence plasmid 65kDa B protein ND442_13465 PF18807 Tripartite Tc toxins repeat ND442_13465 PF14431 YwqJ-like deaminase ND442_13495 PF00571 CBS domain ND442_13495 PF01380 SIS domain ND442_13500 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND442_13500 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND442_13510 PF02653 Branched-chain amino acid transport system / permease component ND442_13515 PF00005 ABC transporter ND442_13525 PF00561 alpha/beta hydrolase fold ND442_13530 PF03466 LysR substrate binding domain ND442_13530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_13535 PF02652 L-lactate permease ND442_13540 PF01070 FMN-dependent dehydrogenase ND442_13545 PF06039 Malate:quinone oxidoreductase (Mqo) ND442_13550 PF00313 'Cold-shock' DNA-binding domain ND442_13560 PF06711 Protein of unknown function (DUF1198) ND442_13565 PF09400 Protein of unknown function (DUF2002) ND442_13580 PF07972 NrdI Flavodoxin like ND442_13585 PF02867 Ribonucleotide reductase, barrel domain ND442_13585 PF08343 Ribonucleotide reductase N-terminal ND442_13585 PF00317 Ribonucleotide reductase, all-alpha domain ND442_13590 PF00268 Ribonucleotide reductase, small chain ND442_13595 PF00005 ABC transporter ND442_13595 PF00571 CBS domain ND442_13600 PF00528 Binding-protein-dependent transport system inner membrane component ND442_13605 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND442_13615 PF07690 Major Facilitator Superfamily ND442_13620 PF01047 MarR family ND442_13630 PF00529 HlyD membrane-fusion protein of T1SS ND442_13630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND442_13635 PF07690 Major Facilitator Superfamily ND442_13640 PF00588 SpoU rRNA Methylase family ND442_13640 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND442_13645 PF00085 Thioredoxin ND442_13650 PF03942 DTW domain ND442_13655 PF13607 Succinyl-CoA ligase like flavodoxin domain ND442_13655 PF13380 CoA binding domain ND442_13655 PF00583 Acetyltransferase (GNAT) family ND442_13660 PF13091 PLD-like domain ND442_13665 PF10043 Predicted periplasmic lipoprotein (DUF2279) ND442_13695 PF00005 ABC transporter ND442_13695 PF09383 NIL domain ND442_13700 PF00528 Binding-protein-dependent transport system inner membrane component ND442_13705 PF03180 NLPA lipoprotein ND442_13710 PF16358 RcsF lipoprotein ND442_13715 PF01980 tRNA-methyltransferase O ND442_13715 PF18389 TrmO C-terminal domain ND442_13720 PF03129 Anticodon binding domain ND442_13720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND442_13720 PF04073 Aminoacyl-tRNA editing domain ND442_13725 PF17185 NlpE C-terminal OB domain ND442_13725 PF04170 NlpE N-terminal domain ND442_13730 PF00472 RF-1 domain ND442_13735 PF07152 YaeQ protein ND442_13740 PF06786 Uncharacterised protein family (UPF0253) ND442_13745 PF07073 Modulator of Rho-dependent transcription termination (ROF) ND442_13750 PF00034 Cytochrome c ND442_13755 PF09179 TilS substrate binding domain ND442_13755 PF11734 TilS substrate C-terminal domain ND442_13755 PF01171 PP-loop family ND442_13760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND442_13775 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ND442_13780 PF07733 Bacterial DNA polymerase III alpha NTPase domain ND442_13780 PF14579 Helix-hairpin-helix motif ND442_13780 PF02811 PHP domain ND442_13780 PF01336 OB-fold nucleic acid binding domain ND442_13780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ND442_13785 PF01351 Ribonuclease HII ND442_13790 PF02684 Lipid-A-disaccharide synthetase ND442_13795 PF00132 Bacterial transferase hexapeptide (six repeats) ND442_13795 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ND442_13800 PF07977 FabA-like domain ND442_13805 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ND442_13805 PF00132 Bacterial transferase hexapeptide (six repeats) ND442_13810 PF03938 Outer membrane protein (OmpH-like) ND442_13815 PF01103 Surface antigen ND442_13815 PF07244 Surface antigen variable number repeat ND442_13820 PF17820 PDZ domain ND442_13820 PF02163 Peptidase family M50 ND442_13830 PF01255 Putative undecaprenyl diphosphate synthase ND442_13835 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ND442_13835 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ND442_13835 PF13288 DXP reductoisomerase C-terminal domain ND442_13840 PF01765 Ribosome recycling factor ND442_13845 PF00696 Amino acid kinase family ND442_13850 PF00889 Elongation factor TS ND442_13855 PF00318 Ribosomal protein S2 ND442_13860 PF00557 Metallopeptidase family M24 ND442_13865 PF01842 ACT domain ND442_13865 PF08335 GlnD PII-uridylyltransferase ND442_13865 PF01966 HD domain ND442_13865 PF01909 Nucleotidyltransferase domain ND442_13870 PF00132 Bacterial transferase hexapeptide (six repeats) ND442_13870 PF14602 Hexapeptide repeat of succinyl-transferase ND442_13870 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ND442_13875 PF11944 Protein of unknown function (DUF3461) ND442_13880 PF00258 Flavodoxin ND442_13885 PF00849 RNA pseudouridylate synthase ND442_13890 PF04287 tRNA pseudouridine synthase C ND442_13895 PF07348 Syd protein (SUKH-2) ND442_13900 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ND442_13900 PF14489 QueF-like protein ND442_13905 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ND442_13905 PF03641 Possible lysine decarboxylase ND442_13905 PF11892 Domain of unknown function (DUF3412) ND442_13910 PF01367 5'-3' exonuclease, C-terminal SAM fold ND442_13910 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND442_13915 PF01728 FtsJ-like methyltransferase ND442_13915 PF18125 RlmM ferredoxin-like domain ND442_13920 PF04241 Protein of unknown function (DUF423) ND442_13925 PF03466 LysR substrate binding domain ND442_13925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_13930 PF06004 Bacterial protein of unknown function (DUF903) ND442_13935 PF00266 Aminotransferase class-V ND442_13940 PF02657 Fe-S metabolism associated domain ND442_13945 PF00899 ThiF family ND442_13950 PF06725 3D domain ND442_13950 PF03562 MltA specific insert domain ND442_13970 PF01520 N-acetylmuramoyl-L-alanine amidase ND442_13970 PF11741 AMIN domain ND442_13975 PF00583 Acetyltransferase (GNAT) family ND442_13975 PF00696 Amino acid kinase family ND442_13980 PF13538 UvrD-like helicase C-terminal domain ND442_13985 PF12705 PD-(D/E)XK nuclease superfamily ND442_13985 PF00580 UvrD/REP helicase N-terminal domain ND442_13985 PF13361 UvrD-like helicase C-terminal domain ND442_13990 PF00675 Insulinase (Peptidase family M16) ND442_13990 PF05193 Peptidase M16 inactive domain ND442_13990 PF16187 Middle or third domain of peptidase_M16 ND442_13995 PF17946 RecC C-terminal domain ND442_14000 PF12528 Type II secretion prepilin peptidase dependent protein C ND442_14000 PF07963 Prokaryotic N-terminal methylation motif ND442_14015 PF00114 Pilin (bacterial filament) ND442_14015 PF07963 Prokaryotic N-terminal methylation motif ND442_14020 PF00303 Thymidylate synthase ND442_14025 PF01790 Prolipoprotein diacylglyceryl transferase ND442_14030 PF00391 PEP-utilising enzyme, mobile domain ND442_14030 PF01590 GAF domain ND442_14030 PF02896 PEP-utilising enzyme, TIM barrel domain ND442_14030 PF05524 PEP-utilising enzyme, N-terminal ND442_14035 PF00293 NUDIX domain ND442_14040 PF02976 DNA mismatch repair enzyme MutH ND442_14045 PF03741 Integral membrane protein TerC family ND442_14050 PF00248 Aldo/keto reductase family ND442_14055 PF07690 Major Facilitator Superfamily ND442_14060 PF01553 Acyltransferase ND442_14060 PF00501 AMP-binding enzyme ND442_14060 PF13193 AMP-binding enzyme C-terminal domain ND442_14065 PF00356 Bacterial regulatory proteins, lacI family ND442_14070 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND442_14070 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ND442_14075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_14075 PF03466 LysR substrate binding domain ND442_14080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_14080 PF03466 LysR substrate binding domain ND442_14120 PF07963 Prokaryotic N-terminal methylation motif ND442_14120 PF11612 Type II secretion system (T2SS), protein J ND442_14125 PF02501 Type II secretion system (T2SS), protein I ND442_14125 PF07963 Prokaryotic N-terminal methylation motif ND442_14135 PF07963 Prokaryotic N-terminal methylation motif ND442_14135 PF08334 Type II secretion system (T2SS), protein G ND442_14140 PF00482 Type II secretion system (T2SS), protein F ND442_14145 PF00437 Type II/IV secretion system protein ND442_14150 PF00263 Bacterial type II and III secretion system protein ND442_14150 PF03958 Bacterial type II/III secretion system short domain ND442_14175 PF00005 ABC transporter ND442_14180 PF02405 Permease MlaE ND442_14190 PF00152 tRNA synthetases class II (D, K and N) ND442_14190 PF01336 OB-fold nucleic acid binding domain ND442_14200 PF01368 DHH family ND442_14200 PF17768 RecJ OB domain ND442_14200 PF02272 DHHA1 domain ND442_14205 PF10411 Disulfide bond isomerase protein N-terminus ND442_14205 PF13098 Thioredoxin-like domain ND442_14210 PF02899 Phage integrase, N-terminal SAM-like domain ND442_14210 PF00589 Phage integrase family ND442_14215 PF00258 Flavodoxin ND442_14220 PF07254 Membrane-bound toxin component of toxin-antitoxin system ND442_14225 PF03937 Flavinator of succinate dehydrogenase ND442_14230 PF01571 Aminomethyltransferase folate-binding domain ND442_14235 PF03006 Haemolysin-III related ND442_14245 PF02347 Glycine cleavage system P-protein ND442_14250 PF01597 Glycine cleavage H-protein ND442_14255 PF08669 Glycine cleavage T-protein C-terminal barrel domain ND442_14255 PF01571 Aminomethyltransferase folate-binding domain ND442_14260 PF01494 FAD binding domain ND442_14265 PF01494 FAD binding domain ND442_14270 PF05195 Aminopeptidase P, N-terminal domain ND442_14270 PF00557 Metallopeptidase family M24 ND442_14275 PF03695 Uncharacterised protein family (UPF0149) ND442_14280 PF05164 Cell division protein ZapA ND442_14290 PF01812 5-formyltetrahydrofolate cyclo-ligase family ND442_14295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND442_14295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND442_14295 PF01842 ACT domain ND442_14300 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ND442_14305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_14305 PF03466 LysR substrate binding domain ND442_14310 PF04402 Protein of unknown function (DUF541) ND442_14315 PF01810 LysE type translocator ND442_14320 PF00924 Mechanosensitive ion channel ND442_14320 PF05552 Conserved TM helix ND442_14325 PF01116 Fructose-bisphosphate aldolase class-II ND442_14330 PF00162 Phosphoglycerate kinase ND442_14335 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND442_14335 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND442_14340 PF02779 Transketolase, pyrimidine binding domain ND442_14340 PF02780 Transketolase, C-terminal domain ND442_14340 PF00456 Transketolase, thiamine diphosphate binding domain ND442_14350 PF17810 Arginine decarboxylase helical bundle domain ND442_14350 PF17944 Arginine decarboxylase C-terminal helical extension ND442_14350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND442_14355 PF02773 S-adenosylmethionine synthetase, C-terminal domain ND442_14355 PF02772 S-adenosylmethionine synthetase, central domain ND442_14355 PF00438 S-adenosylmethionine synthetase, N-terminal domain ND442_14365 PF04143 Sulphur transport ND442_14375 PF17283 SprT-like zinc ribbon domain ND442_14375 PF10263 SprT-like family ND442_14380 PF04231 Endonuclease I ND442_14385 PF04452 RNA methyltransferase ND442_14390 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ND442_14390 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ND442_14395 PF02622 Uncharacterized ACR, COG1678 ND442_14400 PF03652 Holliday junction resolvase ND442_14405 PF00795 Carbon-nitrogen hydrolase ND442_14410 PF04371 Porphyromonas-type peptidyl-arginine deiminase ND442_14415 PF00437 Type II/IV secretion system protein ND442_14420 PF01168 Alanine racemase, N-terminal domain ND442_14425 PF03807 NADP oxidoreductase coenzyme F420-dependent ND442_14425 PF14748 Pyrroline-5-carboxylate reductase dimerisation ND442_14430 PF02325 YGGT family ND442_14435 PF02594 Uncharacterised ACR, YggU family COG1872 ND442_14440 PF01725 Ham1 family ND442_14445 PF06969 HemN C-terminal domain ND442_14445 PF04055 Radical SAM superfamily ND442_14450 PF11101 Protein of unknown function (DUF2884) ND442_14455 PF04960 Glutaminase ND442_14460 PF04320 Protein with unknown function (DUF469) ND442_14465 PF02390 Putative methyltransferase ND442_14470 PF00633 Helix-hairpin-helix motif ND442_14470 PF00730 HhH-GPD superfamily base excision DNA repair protein ND442_14470 PF14815 NUDIX domain ND442_14470 PF10576 Iron-sulfur binding domain of endonuclease III ND442_14475 PF04362 Bacterial Fe(2+) trafficking ND442_14480 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ND442_14480 PF01464 Transglycosylase SLT domain ND442_14525 PF00294 pfkB family carbohydrate kinase ND442_14530 PF02901 Pyruvate formate lyase-like ND442_14530 PF01228 Glycine radical ND442_14535 PF00871 Acetokinase family ND442_14540 PF01490 Transmembrane amino acid transporter protein ND442_14545 PF00291 Pyridoxal-phosphate dependent enzyme ND442_14550 PF00975 Thioesterase domain ND442_14550 PF00501 AMP-binding enzyme ND442_14550 PF13193 AMP-binding enzyme C-terminal domain ND442_14550 PF00668 Condensation domain ND442_14550 PF00550 Phosphopantetheine attachment site ND442_14560 PF00857 Isochorismatase family ND442_14560 PF00550 Phosphopantetheine attachment site ND442_14565 PF00501 AMP-binding enzyme ND442_14565 PF13193 AMP-binding enzyme C-terminal domain ND442_14570 PF00425 chorismate binding enzyme ND442_14575 PF01497 Periplasmic binding protein ND442_14580 PF05977 Transmembrane secretion effector ND442_14585 PF01032 FecCD transport family ND442_14590 PF01032 FecCD transport family ND442_14595 PF00005 ABC transporter ND442_14605 PF00501 AMP-binding enzyme ND442_14605 PF13193 AMP-binding enzyme C-terminal domain ND442_14605 PF00668 Condensation domain ND442_14605 PF00550 Phosphopantetheine attachment site ND442_14605 PF00975 Thioesterase domain ND442_14610 PF03621 MbtH-like protein ND442_14615 PF11806 Domain of unknown function (DUF3327) ND442_14615 PF00756 Putative esterase ND442_14620 PF07715 TonB-dependent Receptor Plug Domain ND442_14620 PF00593 TonB dependent receptor ND442_14625 PF08501 Shikimate dehydrogenase substrate binding domain ND442_14650 PF04972 BON domain ND442_14650 PF00263 Bacterial type II and III secretion system protein ND442_14650 PF13629 Pilus formation protein N terminal region ND442_14670 PF00437 Type II/IV secretion system protein ND442_14710 PF02472 Biopolymer transport protein ExbD/TolR ND442_14715 PF01618 MotA/TolQ/ExbB proton channel family ND442_14720 PF01053 Cys/Met metabolism PLP-dependent enzyme ND442_14725 PF09335 SNARE associated Golgi protein ND442_14730 PF06719 AraC-type transcriptional regulator N-terminus ND442_14730 PF12833 Helix-turn-helix domain ND442_14735 PF00465 Iron-containing alcohol dehydrogenase ND442_14740 PF00248 Aldo/keto reductase family ND442_14745 PF04055 Radical SAM superfamily ND442_14745 PF08497 Radical SAM N-terminal ND442_14745 PF11842 Domain of unknown function (DUF3362) ND442_14750 PF07731 Multicopper oxidase ND442_14750 PF07732 Multicopper oxidase ND442_14755 PF01553 Acyltransferase ND442_14760 PF03989 DNA gyrase C-terminal domain, beta-propeller ND442_14760 PF00521 DNA gyrase/topoisomerase IV, subunit A ND442_14765 PF02525 Flavodoxin-like fold ND442_14770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_14770 PF03466 LysR substrate binding domain ND442_14775 PF01751 Toprim domain ND442_14775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_14775 PF00204 DNA gyrase B ND442_14775 PF00986 DNA gyrase B subunit, carboxyl terminus ND442_14780 PF05728 Uncharacterised protein family (UPF0227) ND442_14785 PF00149 Calcineurin-like phosphoesterase ND442_14790 PF06853 Protein of unknown function (DUF1249) ND442_14795 PF00293 NUDIX domain ND442_14800 PF02321 Outer membrane efflux protein ND442_14805 PF06693 Protein of unknown function (DUF1190) ND442_14810 PF03738 Glutathionylspermidine synthase preATP-grasp ND442_14815 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ND442_14820 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ND442_14825 PF04380 Membrane fusogenic activity ND442_14835 PF01467 Cytidylyltransferase-like ND442_14835 PF00294 pfkB family carbohydrate kinase ND442_14840 PF08335 GlnD PII-uridylyltransferase ND442_14840 PF03710 Glutamate-ammonia ligase adenylyltransferase ND442_14845 PF01928 CYTH domain ND442_14850 PF08239 Bacterial SH3 domain ND442_14855 PF12627 Probable RNA and SrmB- binding site of polymerase A ND442_14855 PF01743 Poly A polymerase head domain ND442_14855 PF01966 HD domain ND442_14860 PF02673 Bacitracin resistance protein BacA ND442_14865 PF02152 Dihydroneopterin aldolase ND442_14870 PF02660 Glycerol-3-phosphate acyltransferase ND442_14875 PF00814 Glycoprotease family ND442_14880 PF01165 Ribosomal protein S21 ND442_14885 PF01807 CHC2 zinc finger ND442_14885 PF08275 DNA primase catalytic core, N-terminal domain ND442_14885 PF08278 DNA primase DnaG DnaB-binding ND442_14885 PF10410 DnaB-helicase binding domain of primase ND442_14890 PF04545 Sigma-70, region 4 ND442_14890 PF04539 Sigma-70 region 3 ND442_14890 PF00140 Sigma-70 factor, region 1.2 ND442_14890 PF04546 Sigma-70, non-essential region ND442_14890 PF04542 Sigma-70 region 2 ND442_14890 PF03979 Sigma-70 factor, region 1.1 ND442_14915 PF00106 short chain dehydrogenase ND442_14940 PF08241 Methyltransferase domain ND442_14945 PF00535 Glycosyl transferase family 2 ND442_14980 PF13332 Hemagglutinin repeat ND442_14980 PF05860 haemagglutination activity domain ND442_14980 PF04829 Pre-toxin domain with VENN motif ND442_14980 PF13018 Extended Signal Peptide of Type V secretion system ND442_14985 PF04829 Pre-toxin domain with VENN motif ND442_14985 PF05860 haemagglutination activity domain ND442_14985 PF13018 Extended Signal Peptide of Type V secretion system ND442_14985 PF13332 Hemagglutinin repeat ND442_14995 PF08479 POTRA domain, ShlB-type ND442_14995 PF17287 POTRA domain ND442_14995 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND442_15000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND442_15000 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND442_15005 PF05175 Methyltransferase small domain ND442_15015 PF01863 Protein of unknown function DUF45 ND442_15020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND442_15025 PF03741 Integral membrane protein TerC family ND442_15030 PF00375 Sodium:dicarboxylate symporter family ND442_15035 PF10688 Bacterial inner membrane protein ND442_15040 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ND442_15040 PF08666 SAF domain ND442_15045 PF08125 Mannitol dehydrogenase C-terminal domain ND442_15045 PF01232 Mannitol dehydrogenase Rossmann domain ND442_15050 PF02614 Glucuronate isomerase ND442_15055 PF07690 Major Facilitator Superfamily ND442_15060 PF00392 Bacterial regulatory proteins, gntR family ND442_15060 PF07729 FCD domain ND442_15070 PF09335 SNARE associated Golgi protein ND442_15075 PF13721 SecD export protein N-terminal TM region ND442_15085 PF05957 Bacterial protein of unknown function (DUF883) ND442_15090 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ND442_15095 PF13997 YqjK-like protein ND442_15100 PF07681 DoxX ND442_15105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_15105 PF03466 LysR substrate binding domain ND442_15110 PF17954 Quercetinase C-terminal cupin domain ND442_15110 PF02678 Pirin ND442_15125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND442_15130 PF04348 LppC putative lipoprotein ND442_15135 PF02021 Uncharacterised protein family UPF0102 ND442_15140 PF13580 SIS domain ND442_15145 PF04972 BON domain ND442_15150 PF00912 Transglycosylase ND442_15160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_15160 PF00512 His Kinase A (phospho-acceptor) domain ND442_15160 PF18415 Histidine kinase receptor ArcB trans-membrane domain ND442_15160 PF01627 Hpt domain ND442_15160 PF00989 PAS fold ND442_15160 PF00072 Response regulator receiver domain ND442_15165 PF16199 Radical_SAM C-terminal domain ND442_15165 PF04055 Radical SAM superfamily ND442_15170 PF00310 Glutamine amidotransferases class-II ND442_15170 PF01645 Conserved region in glutamate synthase ND442_15170 PF01493 GXGXG motif ND442_15170 PF04898 Glutamate synthase central domain ND442_15175 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND442_15175 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ND442_15185 PF04386 Stringent starvation protein B ND442_15190 PF00043 Glutathione S-transferase, C-terminal domain ND442_15190 PF02798 Glutathione S-transferase, N-terminal domain ND442_15195 PF00380 Ribosomal protein S9/S16 ND442_15200 PF00572 Ribosomal protein L13 ND442_15205 PF03969 AFG1-like ATPase ND442_15210 PF06295 Protein of unknown function (DUF1043) ND442_15215 PF00595 PDZ domain ND442_15215 PF13180 PDZ domain ND442_15220 PF13180 PDZ domain ND442_15225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND442_15230 PF01722 BolA-like protein ND442_15235 PF13466 STAS domain ND442_15240 PF05494 MlaC protein ND442_15245 PF02470 MlaD protein ND442_15250 PF02405 Permease MlaE ND442_15255 PF00005 ABC transporter ND442_15260 PF01699 Sodium/calcium exchanger protein ND442_15265 PF00571 CBS domain ND442_15265 PF01380 SIS domain ND442_15275 PF06835 Lipopolysaccharide-assembly, LptC-related ND442_15280 PF03968 OstA-like protein ND442_15285 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND442_15285 PF00005 ABC transporter ND442_15290 PF00309 Sigma-54 factor, Activator interacting domain (AID) ND442_15290 PF04963 Sigma-54 factor, core binding domain ND442_15290 PF04552 Sigma-54, DNA binding domain ND442_15295 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND442_15300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND442_15305 PF03668 P-loop ATPase protein family ND442_15310 PF00381 PTS HPr component phosphorylation site ND442_15315 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND442_15315 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND442_15320 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ND442_15320 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ND442_15325 PF01042 Endoribonuclease L-PSP ND442_15330 PF00128 Alpha amylase, catalytic domain ND442_15330 PF11941 Domain of unknown function (DUF3459) ND442_15335 PF00367 phosphotransferase system, EIIB ND442_15335 PF02378 Phosphotransferase system, EIIC ND442_15340 PF00356 Bacterial regulatory proteins, lacI family ND442_15345 PF00689 Cation transporting ATPase, C-terminus ND442_15345 PF00690 Cation transporter/ATPase, N-terminus ND442_15355 PF01272 Transcription elongation factor, GreA/GreB, C-term ND442_15355 PF14760 Rnk N-terminus ND442_15360 PF07361 Cytochrome b562 ND442_15365 PF01523 Putative modulator of DNA gyrase ND442_15370 PF04751 Protein of unknown function (DUF615) ND442_15375 PF01337 Barstar (barnase inhibitor) ND442_15380 PF00545 ribonuclease ND442_15385 PF00171 Aldehyde dehydrogenase family ND442_15390 PF04632 Fusaric acid resistance protein family ND442_15395 PF13533 Biotin-lipoyl like ND442_15400 PF07869 Protein of unknown function (DUF1656) ND442_15405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_15405 PF03466 LysR substrate binding domain ND442_15410 PF01523 Putative modulator of DNA gyrase ND442_15415 PF00795 Carbon-nitrogen hydrolase ND442_15420 PF13502 AsmA-like C-terminal region ND442_15420 PF13116 Protein of unknown function ND442_15425 PF10150 Ribonuclease E/G family ND442_15425 PF00575 S1 RNA binding domain ND442_15430 PF02545 Maf-like protein ND442_15435 PF04093 rod shape-determining protein MreD ND442_15440 PF04085 rod shape-determining protein MreC ND442_15450 PF17157 Gammaproteobacterial periplasmic sensor domain ND442_15450 PF00990 Diguanylate cyclase, GGDEF domain ND442_15450 PF00563 EAL domain ND442_15455 PF00107 Zinc-binding dehydrogenase ND442_15455 PF08240 Alcohol dehydrogenase GroES-like domain ND442_15460 PF00174 Oxidoreductase molybdopterin binding domain ND442_15465 PF01794 Ferric reductase like transmembrane component ND442_15470 PF01220 Dehydroquinase class II ND442_15475 PF00364 Biotin-requiring enzyme ND442_15480 PF02785 Biotin carboxylase C-terminal domain ND442_15480 PF00289 Biotin carboxylase, N-terminal domain ND442_15480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND442_15485 PF06196 Protein of unknown function (DUF997) ND442_15490 PF00474 Sodium:solute symporter family ND442_15500 PF01207 Dihydrouridine synthase (Dus) ND442_15505 PF02954 Bacterial regulatory protein, Fis family ND442_15515 PF03279 Bacterial lipid A biosynthesis acyltransferase ND442_15520 PF00484 Carbonic anhydrase ND442_15525 PF04172 LrgB-like family ND442_15530 PF03788 LrgA family ND442_15535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_15535 PF03466 LysR substrate binding domain ND442_15540 PF00999 Sodium/hydrogen exchanger family ND442_15545 PF00860 Permease family ND442_15555 PF00436 Single-strand binding protein family ND442_15560 PF00005 ABC transporter ND442_15560 PF17755 UvrA DNA-binding domain ND442_15560 PF17760 UvrA interaction domain ND442_15565 PF04237 YjbR ND442_15570 PF00155 Aminotransferase class I and II ND442_15575 PF01168 Alanine racemase, N-terminal domain ND442_15575 PF00842 Alanine racemase, C-terminal domain ND442_15580 PF00772 DnaB-like helicase N terminal domain ND442_15580 PF03796 DnaB-like helicase C terminal domain ND442_15585 PF00107 Zinc-binding dehydrogenase ND442_15585 PF08240 Alcohol dehydrogenase GroES-like domain ND442_15590 PF09583 Phage shock protein G (Phageshock_PspG) ND442_15595 PF01207 Dihydrouridine synthase (Dus) ND442_15600 PF01475 Ferric uptake regulator family ND442_15605 PF01726 LexA DNA binding domain ND442_15605 PF00717 Peptidase S24-like ND442_15610 PF01219 Prokaryotic diacylglycerol kinase ND442_15615 PF01553 Acyltransferase ND442_15620 PF01040 UbiA prenyltransferase family ND442_15625 PF04345 Chorismate lyase ND442_15630 PF07148 Maltose operon periplasmic protein precursor (MalM) ND442_15635 PF02264 LamB porin ND442_15640 PF00005 ABC transporter ND442_15640 PF17912 MalK OB fold domain ND442_15650 PF01547 Bacterial extracellular solute-binding protein ND442_15655 PF00528 Binding-protein-dependent transport system inner membrane component ND442_15655 PF14785 Maltose transport system permease protein MalF P2 domain ND442_15660 PF00528 Binding-protein-dependent transport system inner membrane component ND442_15665 PF06146 Phosphate-starvation-inducible E ND442_15670 PF00342 Phosphoglucose isomerase ND442_15675 PF01842 ACT domain ND442_15675 PF00696 Amino acid kinase family ND442_15680 PF17287 POTRA domain ND442_15680 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND442_15680 PF08479 POTRA domain, ShlB-type ND442_15685 PF13332 Hemagglutinin repeat ND442_15685 PF05860 haemagglutination activity domain ND442_15690 PF00872 Transposase, Mutator family ND442_15695 PF02369 Bacterial Ig-like domain (group 1) ND442_15695 PF11924 Inverse autotransporter, beta-domain ND442_15695 PF07979 Intimin C-type lectin domain ND442_15695 PF09134 Invasin, domain 3 ND442_15705 PF04488 Glycosyltransferase sugar-binding region containing DXD motif ND442_15715 PF00004 ATPase family associated with various cellular activities (AAA) ND442_15715 PF17862 AAA+ lid domain ND442_15715 PF01434 Peptidase family M41 ND442_15795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_15795 PF03466 LysR substrate binding domain ND442_15815 PF02310 B12 binding domain ND442_15815 PF02607 B12 binding domain ND442_15815 PF00809 Pterin binding enzyme ND442_15815 PF02574 Homocysteine S-methyltransferase ND442_15815 PF02965 Vitamin B12 dependent methionine synthase, activation domain ND442_15820 PF01614 Bacterial transcriptional regulator ND442_15820 PF09339 IclR helix-turn-helix domain ND442_15825 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ND442_15830 PF00463 Isocitrate lyase family ND442_15835 PF01274 Malate synthase ND442_15840 PF04204 Homoserine O-succinyltransferase ND442_15875 PF01808 AICARFT/IMPCHase bienzyme ND442_15875 PF02142 MGS-like domain ND442_15880 PF02843 Phosphoribosylglycinamide synthetase, C domain ND442_15880 PF02844 Phosphoribosylglycinamide synthetase, N domain ND442_15880 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ND442_15885 PF07356 Protein of unknown function (DUF1481) ND442_15890 PF00216 Bacterial DNA-binding protein ND442_15895 PF04222 Protein of unknown function (DUF416) ND442_15900 PF04493 Endonuclease V ND442_15905 PF01208 Uroporphyrinogen decarboxylase (URO-D) ND442_15910 PF00293 NUDIX domain ND442_15910 PF09297 NADH pyrophosphatase zinc ribbon domain ND442_15915 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ND442_15920 PF01964 Radical SAM ThiC family ND442_15920 PF13667 ThiC-associated domain ND442_15925 PF02581 Thiamine monophosphate synthase ND442_15930 PF00899 ThiF family ND442_15935 PF02597 ThiS family ND442_15940 PF05690 Thiazole biosynthesis protein ThiG ND442_15945 PF06968 Biotin and Thiamin Synthesis associated domain ND442_15945 PF04055 Radical SAM superfamily ND442_15950 PF04997 RNA polymerase Rpb1, domain 1 ND442_15950 PF04983 RNA polymerase Rpb1, domain 3 ND442_15950 PF00623 RNA polymerase Rpb1, domain 2 ND442_15950 PF04998 RNA polymerase Rpb1, domain 5 ND442_15950 PF05000 RNA polymerase Rpb1, domain 4 ND442_15955 PF04565 RNA polymerase Rpb2, domain 3 ND442_15955 PF10385 RNA polymerase beta subunit external 1 domain ND442_15955 PF04563 RNA polymerase beta subunit ND442_15955 PF00562 RNA polymerase Rpb2, domain 6 ND442_15955 PF04560 RNA polymerase Rpb2, domain 7 ND442_15955 PF04561 RNA polymerase Rpb2, domain 2 ND442_15960 PF00542 Ribosomal protein L7/L12 C-terminal domain ND442_15960 PF16320 Ribosomal protein L7/L12 dimerisation domain ND442_15965 PF00466 Ribosomal protein L10 ND442_15970 PF00687 Ribosomal protein L1p/L10e family ND442_15975 PF00298 Ribosomal protein L11, RNA binding domain ND442_15975 PF03946 Ribosomal protein L11, N-terminal domain ND442_15980 PF00467 KOW motif ND442_15980 PF02357 Transcription termination factor nusG ND442_15985 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ND442_15990 PF00009 Elongation factor Tu GTP binding domain ND442_15990 PF03144 Elongation factor Tu domain 2 ND442_15990 PF03143 Elongation factor Tu C-terminal domain ND442_16015 PF00485 Phosphoribulokinase / Uridine kinase family ND442_16020 PF03099 Biotin/lipoate A/B protein ligase family ND442_16020 PF08279 HTH domain ND442_16020 PF02237 Biotin protein ligase C terminal domain ND442_16025 PF01565 FAD binding domain ND442_16025 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ND442_16050 PF12724 Flavodoxin domain ND442_16055 PF02386 Cation transport protein ND442_16060 PF09186 Domain of unknown function (DUF1949) ND442_16060 PF01205 Uncharacterized protein family UPF0029 ND442_16065 PF00557 Metallopeptidase family M24 ND442_16070 PF00378 Enoyl-CoA hydratase/isomerase ND442_16070 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND442_16070 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND442_16075 PF02803 Thiolase, C-terminal domain ND442_16075 PF00108 Thiolase, N-terminal domain ND442_16080 PF00970 Oxidoreductase FAD-binding domain ND442_16080 PF00175 Oxidoreductase NAD-binding domain ND442_16085 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ND442_16095 PF02357 Transcription termination factor nusG ND442_16100 PF00490 Delta-aminolevulinic acid dehydratase ND442_16105 PF01026 TatD related DNase ND442_16110 PF00902 Sec-independent protein translocase protein (TatC) ND442_16120 PF02416 mttA/Hcf106 family ND442_16125 PF03109 ABC1 family ND442_16130 PF02036 SCP-2 sterol transfer family ND442_16135 PF01209 ubiE/COQ5 methyltransferase family ND442_16140 PF02646 RmuC family ND442_16145 PF09335 SNARE associated Golgi protein ND442_16150 PF13722 5TM C-terminal transporter carbon starvation CstA ND442_16150 PF02554 Carbon starvation protein CstA ND442_16160 PF01048 Phosphorylase superfamily ND442_16165 PF01738 Dienelactone hydrolase family ND442_16170 PF01717 Cobalamin-independent synthase, Catalytic domain ND442_16170 PF08267 Cobalamin-independent synthase, N-terminal domain ND442_16175 PF03466 LysR substrate binding domain ND442_16175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_16180 PF00892 EamA-like transporter family ND442_16190 PF03009 Glycerophosphoryl diester phosphodiesterase family ND442_16195 PF17912 MalK OB fold domain ND442_16195 PF00005 ABC transporter ND442_16200 PF00528 Binding-protein-dependent transport system inner membrane component ND442_16205 PF00528 Binding-protein-dependent transport system inner membrane component ND442_16210 PF13416 Bacterial extracellular solute-binding protein ND442_16245 PF00005 ABC transporter ND442_16250 PF00005 ABC transporter ND442_16250 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND442_16255 PF11862 Domain of unknown function (DUF3382) ND442_16255 PF02653 Branched-chain amino acid transport system / permease component ND442_16260 PF02653 Branched-chain amino acid transport system / permease component ND442_16265 PF13458 Periplasmic binding protein ND442_16270 PF12568 Acetyltransferase (GNAT) domain, PanZ ND442_16275 PF02595 Glycerate kinase family ND442_16280 PF02447 GntP family permease ND442_16285 PF05651 Putative sugar diacid recognition ND442_16285 PF17853 GGDEF-like domain ND442_16285 PF13556 PucR C-terminal helix-turn-helix domain ND442_16290 PF04542 Sigma-70 region 2 ND442_16290 PF04545 Sigma-70, region 4 ND442_16290 PF00140 Sigma-70 factor, region 1.2 ND442_16295 PF18075 FtsX extracellular domain ND442_16295 PF02687 FtsX-like permease family ND442_16300 PF00005 ABC transporter ND442_16305 PF02881 SRP54-type protein, helical bundle domain ND442_16305 PF00448 SRP54-type protein, GTPase domain ND442_16305 PF02881 SRP54-type protein, helical bundle domain ND442_16305 PF00448 SRP54-type protein, GTPase domain ND442_16315 PF06611 Protein of unknown function (DUF1145) ND442_16330 PF07947 YhhN family ND442_16335 PF00403 Heavy-metal-associated domain ND442_16340 PF01206 Sulfurtransferase TusA ND442_16345 PF02592 Putative vitamin uptake transporter ND442_16350 PF08786 DcrB ND442_16355 PF13183 4Fe-4S dicluster domain ND442_16355 PF02754 Cysteine-rich domain ND442_16360 PF00890 FAD binding domain ND442_16365 PF01266 FAD dependent oxidoreductase ND442_16365 PF04324 BFD-like [2Fe-2S] binding domain ND442_16375 PF07690 Major Facilitator Superfamily ND442_16380 PF03009 Glycerophosphoryl diester phosphodiesterase family ND442_16390 PF12146 Serine aminopeptidase, S33 ND442_16395 PF01810 LysE type translocator ND442_16400 PF00270 DEAD/DEAH box helicase ND442_16400 PF00570 HRDC domain ND442_16400 PF16124 RecQ zinc-binding ND442_16400 PF09382 RQC domain ND442_16400 PF00271 Helicase conserved C-terminal domain ND442_16405 PF02253 Phospholipase A1 ND442_16410 PF03061 Thioesterase superfamily ND442_16415 PF00892 EamA-like transporter family ND442_16420 PF01544 CorA-like Mg2+ transporter protein ND442_16430 PF09370 Phosphoenolpyruvate hydrolase-like ND442_16445 PF13361 UvrD-like helicase C-terminal domain ND442_16445 PF00580 UvrD/REP helicase N-terminal domain ND442_16450 PF13419 Haloacid dehalogenase-like hydrolase ND442_16455 PF02899 Phage integrase, N-terminal SAM-like domain ND442_16455 PF00589 Phage integrase family ND442_16460 PF04340 Protein of unknown function, DUF484 ND442_16465 PF01678 Diaminopimelate epimerase ND442_16470 PF13627 Prokaryotic lipoprotein-attachment site ND442_16475 PF01491 Frataxin-like domain ND442_16480 PF12633 Adenylate cyclase NT domain ND442_16480 PF01295 Adenylate cyclase, class-I ND442_16485 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ND442_16485 PF03900 Porphobilinogen deaminase, C-terminal domain ND442_16490 PF02602 Uroporphyrinogen-III synthase HemD ND442_16495 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ND442_16500 PF07719 Tetratricopeptide repeat ND442_16500 PF07219 HemY protein N-terminus ND442_16530 PF00324 Amino acid permease ND442_16535 PF03808 Glycosyl transferase WecB/TagA/CpsF family ND442_16540 PF06899 WzyE protein, O-antigen assembly polymerase ND442_16545 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ND442_16550 PF01943 Polysaccharide biosynthesis protein ND442_16555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND442_16565 PF00483 Nucleotidyl transferase ND442_16570 PF16363 GDP-mannose 4,6 dehydratase ND442_16575 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND442_16575 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND442_16575 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND442_16580 PF02350 UDP-N-acetylglucosamine 2-epimerase ND442_16585 PF02706 Chain length determinant protein ND442_16590 PF00953 Glycosyl transferase family 4 ND442_16595 PF07497 Rho termination factor, RNA-binding domain ND442_16595 PF07498 Rho termination factor, N-terminal domain ND442_16595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND442_16600 PF00085 Thioredoxin ND442_16605 PF00270 DEAD/DEAH box helicase ND442_16605 PF00271 Helicase conserved C-terminal domain ND442_16610 PF02541 Ppx/GppA phosphatase family ND442_16615 PF00580 UvrD/REP helicase N-terminal domain ND442_16615 PF13361 UvrD-like helicase C-terminal domain ND442_16625 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ND442_16625 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ND442_16630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_16630 PF03466 LysR substrate binding domain ND442_16635 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND442_16635 PF18416 N-acetylglucosamine binding protein domain 2 ND442_16640 PF00585 C-terminal regulatory domain of Threonine dehydratase ND442_16640 PF00291 Pyridoxal-phosphate dependent enzyme ND442_16645 PF00920 Dehydratase family ND442_16650 PF01063 Amino-transferase class IV ND442_16660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND442_16660 PF00205 Thiamine pyrophosphate enzyme, central domain ND442_16660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND442_16665 PF08046 IlvGEDA operon leader peptide ND442_16670 PF01078 Magnesium chelatase, subunit ChlI ND442_16670 PF13335 Magnesium chelatase, subunit ChlI C-terminal ND442_16675 PF04219 Protein of unknown function, DUF ND442_16680 PF03466 LysR substrate binding domain ND442_16680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_16730 PF01177 Asp/Glu/Hydantoin racemase ND442_16735 PF00593 TonB dependent receptor ND442_16735 PF07715 TonB-dependent Receptor Plug Domain ND442_16740 PF05958 tRNA (Uracil-5-)-methyltransferase ND442_16745 PF07226 Protein of unknown function (DUF1422) ND442_16750 PF00440 Bacterial regulatory proteins, tetR family ND442_16755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND442_16755 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND442_16760 PF03466 LysR substrate binding domain ND442_16760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_16765 PF08534 Redoxin ND442_16765 PF00462 Glutaredoxin ND442_16770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND442_16770 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND442_16790 PF00529 HlyD membrane-fusion protein of T1SS ND442_16795 PF00005 ABC transporter ND442_16795 PF00664 ABC transporter transmembrane region ND442_16805 PF07715 TonB-dependent Receptor Plug Domain ND442_16805 PF00593 TonB dependent receptor ND442_16810 PF14698 Argininosuccinate lyase C-terminal ND442_16810 PF00206 Lyase ND442_16815 PF00764 Arginosuccinate synthase ND442_16820 PF00696 Amino acid kinase family ND442_16825 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND442_16825 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND442_16830 PF07687 Peptidase dimerisation domain ND442_16830 PF01546 Peptidase family M20/M25/M40 ND442_16835 PF00311 Phosphoenolpyruvate carboxylase ND442_16845 PF02219 Methylenetetrahydrofolate reductase ND442_16865 PF00696 Amino acid kinase family ND442_16865 PF00742 Homoserine dehydrogenase ND442_16865 PF03447 Homoserine dehydrogenase, NAD binding domain ND442_16870 PF01053 Cys/Met metabolism PLP-dependent enzyme ND442_16875 PF01340 Met Apo-repressor, MetJ ND442_16880 PF01197 Ribosomal protein L31 ND442_16885 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ND442_16885 PF18074 Primosomal protein N C-terminal domain ND442_16885 PF17764 3′ DNA-binding domain (3′BD) ND442_16885 PF00271 Helicase conserved C-terminal domain ND442_16885 PF00270 DEAD/DEAH box helicase ND442_16890 PF00356 Bacterial regulatory proteins, lacI family ND442_16895 PF05036 Sporulation related domain ND442_16900 PF00227 Proteasome subunit ND442_16905 PF00004 ATPase family associated with various cellular activities (AAA) ND442_16905 PF10431 C-terminal, D2-small domain, of ClpB protein ND442_16905 PF07724 AAA domain (Cdc48 subfamily) ND442_16910 PF01040 UbiA prenyltransferase family ND442_16915 PF03737 Aldolase/RraA ND442_16920 PF06005 Cell division protein ZapB ND442_16925 PF00230 Major intrinsic protein ND442_16930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND442_16930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND442_16935 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ND442_16940 PF07690 Major Facilitator Superfamily ND442_16945 PF00175 Oxidoreductase NAD-binding domain ND442_16945 PF00970 Oxidoreductase FAD-binding domain ND442_16950 PF05656 Protein of unknown function (DUF805) ND442_16955 PF07305 Protein of unknown function (DUF1454) ND442_16960 PF00121 Triosephosphate isomerase ND442_16970 PF00365 Phosphofructokinase ND442_16975 PF01545 Cation efflux family ND442_16975 PF16916 Dimerisation domain of Zinc Transporter ND442_16980 PF07813 LTXXQ motif family protein ND442_16985 PF00486 Transcriptional regulatory protein, C terminal ND442_16985 PF00072 Response regulator receiver domain ND442_16990 PF16527 Two-component sensor protein CpxA, periplasmic domain ND442_16990 PF00672 HAMP domain ND442_16990 PF00512 His Kinase A (phospho-acceptor) domain ND442_16990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_16995 PF00588 SpoU rRNA Methylase family ND442_17000 PF06426 Serine acetyltransferase, N-terminal ND442_17000 PF00132 Bacterial transferase hexapeptide (six repeats) ND442_17005 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ND442_17005 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ND442_17010 PF02556 Preprotein translocase subunit SecB ND442_17015 PF00462 Glutaredoxin ND442_17020 PF00581 Rhodanese-like domain ND442_17025 PF01676 Metalloenzyme superfamily ND442_17025 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ND442_17030 PF01551 Peptidase family M23 ND442_17035 PF04748 Divergent polysaccharide deacetylase ND442_17040 PF08240 Alcohol dehydrogenase GroES-like domain ND442_17040 PF00107 Zinc-binding dehydrogenase ND442_17045 PF00155 Aminotransferase class I and II ND442_17050 PF01370 NAD dependent epimerase/dehydratase family ND442_17055 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND442_17060 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND442_17065 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ND442_17070 PF00535 Glycosyl transferase family 2 ND442_17075 PF01467 Cytidylyltransferase-like ND442_17080 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ND442_17080 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ND442_17080 PF06827 Zinc finger found in FPG and IleRS ND442_17085 PF00471 Ribosomal protein L33 ND442_17090 PF00830 Ribosomal L28 family ND442_17095 PF04002 RadC-like JAB domain ND442_17100 PF02441 Flavoprotein ND442_17100 PF04127 DNA / pantothenate metabolism flavoprotein ND442_17105 PF00692 dUTPase ND442_17110 PF00440 Bacterial regulatory proteins, tetR family ND442_17115 PF00156 Phosphoribosyl transferase domain ND442_17120 PF01138 3' exoribonuclease family, domain 1 ND442_17120 PF03725 3' exoribonuclease family, domain 2 ND442_17125 PF03755 YicC-like family, N-terminal region ND442_17125 PF08340 Domain of unknown function (DUF1732) ND442_17135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND442_17135 PF03466 LysR substrate binding domain ND442_17140 PF00990 Diguanylate cyclase, GGDEF domain ND442_17140 PF13426 PAS domain ND442_17140 PF00563 EAL domain ND442_17145 PF00378 Enoyl-CoA hydratase/isomerase ND442_17150 PF07662 Na+ dependent nucleoside transporter C-terminus ND442_17150 PF07670 Nucleoside recognition ND442_17150 PF01773 Na+ dependent nucleoside transporter N-terminus ND442_17160 PF03458 UPF0126 domain ND442_17165 PF03120 NAD-dependent DNA ligase OB-fold domain ND442_17165 PF01653 NAD-dependent DNA ligase adenylation domain ND442_17170 PF00625 Guanylate kinase ND442_17175 PF01192 RNA polymerase Rpb6 ND442_17180 PF13291 ACT domain ND442_17180 PF04607 Region found in RelA / SpoT proteins ND442_17180 PF02824 TGS domain ND442_17185 PF12105 SpoU, rRNA methylase, C-terminal ND442_17185 PF00588 SpoU rRNA Methylase family ND442_17190 PF17191 RecG wedge domain ND442_17190 PF00271 Helicase conserved C-terminal domain ND442_17190 PF00270 DEAD/DEAH box helicase ND442_17195 PF03616 Sodium/glutamate symporter ND442_17200 PF00860 Permease family ND442_17205 PF05170 AsmA family ND442_17210 PF09500 Putative thioesterase (yiiD_Cterm) ND442_17210 PF00583 Acetyltransferase (GNAT) family ND442_17215 PF02580 D-Tyr-tRNA(Tyr) deacylase ND442_17220 PF03631 Virulence factor BrkB ND442_17225 PF13419 Haloacid dehalogenase-like hydrolase ND442_17230 PF00679 Elongation factor G C-terminus ND442_17230 PF00009 Elongation factor Tu GTP binding domain ND442_17230 PF03144 Elongation factor Tu domain 2 ND442_17235 PF03951 Glutamine synthetase, beta-Grasp domain ND442_17235 PF00120 Glutamine synthetase, catalytic domain ND442_17240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND442_17240 PF00512 His Kinase A (phospho-acceptor) domain ND442_17240 PF00989 PAS fold ND442_17245 PF00072 Response regulator receiver domain ND442_17245 PF02954 Bacterial regulatory protein, Fis family ND442_17245 PF00158 Sigma-54 interaction domain ND442_17250 PF04055 Radical SAM superfamily ND442_17250 PF06969 HemN C-terminal domain ND442_17255 PF04220 Der GTPase activator (YihI) ND442_17260 PF01926 50S ribosome-binding GTPase ND442_17265 PF00476 DNA polymerase family A ND442_17265 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND442_17265 PF01367 5'-3' exonuclease, C-terminal SAM fold ND442_17265 PF01612 3'-5' exonuclease ND442_17270 PF01323 DSBA-like thioredoxin domain ND442_17275 PF01636 Phosphotransferase enzyme family ND442_17280 PF06288 Protein of unknown function (DUF1040) ND442_17285 PF12804 MobA-like NTP transferase domain ND442_17290 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ND442_17315 PF07729 FCD domain ND442_17315 PF00392 Bacterial regulatory proteins, gntR family ND442_17320 PF00356 Bacterial regulatory proteins, lacI family ND442_17325 PF00294 pfkB family carbohydrate kinase ND442_17330 PF13407 Periplasmic binding protein domain ND442_17335 PF02653 Branched-chain amino acid transport system / permease component ND442_17340 PF00005 ABC transporter ND442_17345 PF05025 RbsD / FucU transport protein family ND442_17350 PF02705 K+ potassium transporter ND442_17355 PF12592 Protein of unknown function (DUF3763) ND442_17355 PF07728 AAA domain (dynein-related subfamily) ND442_17355 PF17868 AAA lid domain ND442_17360 PF05762 VWA domain containing CoxE-like protein ND442_17370 PF03590 Aspartate-ammonia ligase ND442_17375 PF01037 Lrp/AsnC ligand binding domain ND442_17380 PF00258 Flavodoxin ND442_17385 PF01134 Glucose inhibited division protein A ND442_17385 PF13932 GidA associated domain ND442_17390 PF02527 rRNA small subunit methyltransferase G ND442_17395 PF03899 ATP synthase I chain ND442_17400 PF00119 ATP synthase A chain ND442_17405 PF00137 ATP synthase subunit C ND442_17410 PF00430 ATP synthase B/B' CF(0) ND442_17415 PF00213 ATP synthase delta (OSCP) subunit ND442_17420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND442_17420 PF00306 ATP synthase alpha/beta chain, C terminal domain ND442_17420 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND442_17425 PF00231 ATP synthase ND442_17430 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND442_17430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND442_17435 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ND442_17435 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ND442_17440 PF12804 MobA-like NTP transferase domain ND442_17440 PF00132 Bacterial transferase hexapeptide (six repeats) ND442_17445 PF01380 SIS domain ND442_17450 PF12849 PBP superfamily domain ND442_17455 PF00528 Binding-protein-dependent transport system inner membrane component ND442_17460 PF00528 Binding-protein-dependent transport system inner membrane component ND442_17465 PF00005 ABC transporter ND442_17470 PF01895 PhoU domain ND442_17475 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND442_17480 PF00528 Binding-protein-dependent transport system inner membrane component ND442_17485 PF00528 Binding-protein-dependent transport system inner membrane component ND442_17490 PF00860 Permease family ND442_17495 PF00672 HAMP domain ND442_17495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND442_17495 PF02203 Tar ligand binding domain homologue ND442_17505 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND442_17505 PF02753 Pili assembly chaperone PapD, C-terminal domain ND442_17510 PF00577 Outer membrane usher protein ND442_17510 PF13953 PapC C-terminal domain ND442_17510 PF13954 PapC N-terminal domain ND442_17520 PF01926 50S ribosome-binding GTPase ND442_17520 PF12631 MnmE helical domain ND442_17520 PF10396 GTP-binding protein TrmE N-terminus ND442_17525 PF02096 60Kd inner membrane protein ND442_17525 PF14849 YidC periplasmic domain ND442_17530 PF01809 Putative membrane protein insertion efficiency factor ND442_17535 PF00825 Ribonuclease P ND442_17540 PF00468 Ribosomal protein L34 ND442_17555 PF00756 Putative esterase ND442_17565 PF08240 Alcohol dehydrogenase GroES-like domain ND442_17565 PF00107 Zinc-binding dehydrogenase ND442_17570 PF02583 Metal-sensitive transcriptional repressor ND442_17575 PF00465 Iron-containing alcohol dehydrogenase ND442_17595 PF02796 Helix-turn-helix domain of resolvase ND442_17595 PF00239 Resolvase, N terminal domain ND442_17680 PF00437 Type II/IV secretion system protein ND442_17695 PF01464 Transglycosylase SLT domain ND442_17705 PF04917 Bacterial shufflon protein, N-terminal constant region ND442_17720 PF00437 Type II/IV secretion system protein ND442_17730 PF08401 Domain of unknown function (DUF1738) ND442_17730 PF18818 Metallopeptidase superfamily domain ND442_17730 PF13362 Toprim domain ND442_17835 PF18821 Large polyvalent protein-associated domain 7 ND442_17835 PF03432 Relaxase/Mobilisation nuclease domain ND442_17855 PF01381 Helix-turn-helix ND442_17920 PF06406 StbA protein ND442_17925 PF13614 AAA domain ND442_17935 PF02796 Helix-turn-helix domain of resolvase ND442_17935 PF00239 Resolvase, N terminal domain ND442_17950 PF13610 DDE domain ND442_17955 PF02796 Helix-turn-helix domain of resolvase ND442_17955 PF00239 Resolvase, N terminal domain ND442_17960 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ND442_17965 PF13610 DDE domain