locus-tag class description ND012_00005 PF00308 Bacterial dnaA protein ND012_00005 PF08299 Bacterial dnaA protein helix-turn-helix ND012_00005 PF11638 DnaA N-terminal domain ND012_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ND012_00010 PF02767 DNA polymerase III beta subunit, central domain ND012_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ND012_00015 PF02463 RecF/RecN/SMC N terminal domain ND012_00020 PF01751 Toprim domain ND012_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ND012_00020 PF00204 DNA gyrase B ND012_00020 PF18053 DNA gyrase B subunit insert domain ND012_00030 PF12566 Protein of unknown function (DUF3748) ND012_00030 PF07676 WD40-like Beta Propeller Repeat ND012_00035 PF07119 Protein of unknown function (DUF1375) ND012_00040 PF00011 Hsp20/alpha crystallin family ND012_00045 PF00011 Hsp20/alpha crystallin family ND012_00050 PF02080 TrkA-C domain ND012_00050 PF06826 Predicted Permease Membrane Region ND012_00055 PF00155 Aminotransferase class I and II ND012_00060 PF13488 Glycine zipper ND012_00060 PF00691 OmpA family ND012_00080 PF03352 Methyladenine glycosylase ND012_00090 PF02091 Glycyl-tRNA synthetase alpha subunit ND012_00095 PF05746 DALR anticodon binding domain ND012_00095 PF02092 Glycyl-tRNA synthetase beta subunit ND012_00100 PF11254 Protein of unknown function (DUF3053) ND012_00135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND012_00135 PF02378 Phosphotransferase system, EIIC ND012_00135 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND012_00140 PF01232 Mannitol dehydrogenase Rossmann domain ND012_00140 PF08125 Mannitol dehydrogenase C-terminal domain ND012_00145 PF05068 Mannitol repressor ND012_00150 PF10928 Protein of unknown function (DUF2810) ND012_00155 PF03473 MOSC domain ND012_00155 PF03475 3-alpha domain ND012_00160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_00160 PF02203 Tar ligand binding domain homologue ND012_00160 PF00672 HAMP domain ND012_00165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND012_00165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND012_00170 PF02634 FdhD/NarQ family ND012_00180 PF13247 4Fe-4S dicluster domain ND012_00180 PF09163 Formate dehydrogenase N, transmembrane ND012_00185 PF01292 Prokaryotic cytochrome b561 ND012_00190 PF04216 Protein involved in formate dehydrogenase formation ND012_00195 PF03841 L-seryl-tRNA selenium transferase ND012_00195 PF12390 Selenocysteine synthase N terminal ND012_00200 PF09107 Elongation factor SelB, winged helix ND012_00200 PF09106 Elongation factor SelB, winged helix ND012_00200 PF03144 Elongation factor Tu domain 2 ND012_00200 PF00009 Elongation factor Tu GTP binding domain ND012_00205 PF01427 D-ala-D-ala dipeptidase ND012_00210 PF07690 Major Facilitator Superfamily ND012_00215 PF01757 Acyltransferase family ND012_00225 PF00589 Phage integrase family ND012_00225 PF13356 Arm DNA-binding domain ND012_00225 PF14659 Phage integrase, N-terminal SAM-like domain ND012_00255 PF01175 Urocanase Rossmann-like domain ND012_00255 PF17392 Urocanase C-terminal domain ND012_00255 PF17391 Urocanase N-terminal domain ND012_00260 PF00221 Aromatic amino acid lyase ND012_00265 PF00324 Amino acid permease ND012_00275 PF12146 Serine aminopeptidase, S33 ND012_00280 PF08019 Phosphoethanolamine transferase EptA/EptB ND012_00280 PF00884 Sulfatase ND012_00285 PF00196 Bacterial regulatory proteins, luxR family ND012_00285 PF00072 Response regulator receiver domain ND012_00290 PF07730 Histidine kinase ND012_00290 PF05231 MASE1 ND012_00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_00295 PF07690 Major Facilitator Superfamily ND012_00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_00310 PF00528 Binding-protein-dependent transport system inner membrane component ND012_00315 PF12911 N-terminal TM domain of oligopeptide transport permease C ND012_00315 PF00528 Binding-protein-dependent transport system inner membrane component ND012_00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_00320 PF00005 ABC transporter ND012_00325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_00325 PF00005 ABC transporter ND012_00330 PF11658 Cellulose biosynthesis protein BcsG ND012_00335 PF11120 Cellulose biosynthesis protein BcsF ND012_00340 PF10995 Cellulose biosynthesis GIL ND012_00350 PF06564 Cellulose biosynthesis protein BcsQ ND012_00355 PF03552 Cellulose synthase ND012_00355 PF00535 Glycosyl transferase family 2 ND012_00355 PF07238 PilZ domain ND012_00360 PF03170 Bacterial cellulose synthase subunit ND012_00365 PF01270 Glycosyl hydrolases family 8 ND012_00370 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ND012_00375 PF00672 HAMP domain ND012_00375 PF00990 Diguanylate cyclase, GGDEF domain ND012_00375 PF17154 Gammaproteobacterial periplasmic sensor domain ND012_00375 PF00563 EAL domain ND012_00380 PF00375 Sodium:dicarboxylate symporter family ND012_00385 PF00675 Insulinase (Peptidase family M16) ND012_00385 PF05193 Peptidase M16 inactive domain ND012_00390 PF00294 pfkB family carbohydrate kinase ND012_00395 PF01361 Tautomerase enzyme ND012_00400 PF00563 EAL domain ND012_00405 PF02611 CDP-diacylglycerol pyrophosphatase ND012_00410 PF03631 Virulence factor BrkB ND012_00415 PF03466 LysR substrate binding domain ND012_00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_00420 PF00375 Sodium:dicarboxylate symporter family ND012_00425 PF01053 Cys/Met metabolism PLP-dependent enzyme ND012_00430 PF02369 Bacterial Ig-like domain (group 1) ND012_00430 PF11924 Inverse autotransporter, beta-domain ND012_00430 PF07979 Intimin C-type lectin domain ND012_00430 PF09134 Invasin, domain 3 ND012_00435 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_00435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND012_00440 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ND012_00445 PF01432 Peptidase family M3 ND012_00450 PF04445 Putative SAM-dependent methyltransferase ND012_00455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ND012_00455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ND012_00460 PF00582 Universal stress protein family ND012_00465 PF10625 Universal stress protein B (UspB) ND012_00470 PF01384 Phosphate transporter family ND012_00480 PF08722 TnsA endonuclease N terminal ND012_00480 PF08721 TnsA endonuclease C terminal ND012_00525 PF02796 Helix-turn-helix domain of resolvase ND012_00525 PF00239 Resolvase, N terminal domain ND012_00530 PF02796 Helix-turn-helix domain of resolvase ND012_00530 PF00239 Resolvase, N terminal domain ND012_00550 PF01810 LysE type translocator ND012_00555 PF00583 Acetyltransferase (GNAT) family ND012_00560 PF17954 Quercetinase C-terminal cupin domain ND012_00560 PF02678 Pirin ND012_00565 PF00356 Bacterial regulatory proteins, lacI family ND012_00565 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND012_00570 PF02447 GntP family permease ND012_00575 PF01202 Shikimate kinase ND012_00580 PF01914 MarC family integral membrane protein ND012_00585 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND012_00585 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND012_00590 PF06580 Histidine kinase ND012_00590 PF07694 5TMR of 5TMR-LYT ND012_00595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND012_00595 PF02806 Alpha amylase, C-terminal all-beta domain ND012_00595 PF00128 Alpha amylase, catalytic domain ND012_00600 PF18390 Glycogen debranching enzyme C-terminal domain ND012_00600 PF00128 Alpha amylase, catalytic domain ND012_00600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND012_00605 PF00483 Nucleotidyl transferase ND012_00610 PF00534 Glycosyl transferases group 1 ND012_00610 PF08323 Starch synthase catalytic domain ND012_00615 PF00343 Carbohydrate phosphorylase ND012_00620 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ND012_00620 PF01266 FAD dependent oxidoreductase ND012_00625 PF08220 DeoR-like helix-turn-helix domain ND012_00625 PF00455 DeoR C terminal sensor domain ND012_00630 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ND012_00630 PF01694 Rhomboid family ND012_00635 PF00581 Rhodanese-like domain ND012_00640 PF00196 Bacterial regulatory proteins, luxR family ND012_00640 PF17874 MalT-like TPR region ND012_00645 PF00343 Carbohydrate phosphorylase ND012_00650 PF02446 4-alpha-glucanotransferase ND012_00655 PF01521 Iron-sulphur cluster biosynthesis ND012_00655 PF01106 NifU-like domain ND012_00660 PF00156 Phosphoribosyl transferase domain ND012_00665 PF00561 alpha/beta hydrolase fold ND012_00675 PF09012 FeoC like transcriptional regulator ND012_00680 PF07664 Ferrous iron transport protein B C terminus ND012_00680 PF17910 FeoB cytosolic helical domain ND012_00680 PF02421 Ferrous iron transport protein B ND012_00680 PF07670 Nucleoside recognition ND012_00685 PF04023 FeoA domain ND012_00690 PF17674 HHH domain ND012_00690 PF00575 S1 RNA binding domain ND012_00690 PF09371 Tex-like protein N-terminal domain ND012_00690 PF16921 Tex protein YqgF-like domain ND012_00720 PF03449 Transcription elongation factor, N-terminal ND012_00720 PF01272 Transcription elongation factor, GreA/GreB, C-term ND012_00725 PF00486 Transcriptional regulatory protein, C terminal ND012_00725 PF00072 Response regulator receiver domain ND012_00730 PF00672 HAMP domain ND012_00730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_00730 PF00512 His Kinase A (phospho-acceptor) domain ND012_00735 PF01293 Phosphoenolpyruvate carboxykinase ND012_00740 PF01430 Hsp33 protein ND012_00745 PF01479 S4 domain ND012_00750 PF13419 Haloacid dehalogenase-like hydrolase ND012_00755 PF07095 Intracellular growth attenuator protein IgaA ND012_00760 PF00293 NUDIX domain ND012_00765 PF17092 Penicillin-binding protein OB-like domain ND012_00765 PF00912 Transglycosylase ND012_00765 PF00905 Penicillin binding protein transpeptidase domain ND012_00790 PF03958 Bacterial type II/III secretion system short domain ND012_00790 PF00263 Bacterial type II and III secretion system protein ND012_00795 PF01202 Shikimate kinase ND012_00800 PF01761 3-dehydroquinate synthase ND012_00805 PF05036 Sporulation related domain ND012_00810 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND012_00815 PF00834 Ribulose-phosphate 3 epimerase family ND012_00820 PF13419 Haloacid dehalogenase-like hydrolase ND012_00825 PF00579 tRNA synthetases class I (W and Y) ND012_00830 PF14824 Sirohaem biosynthesis protein central ND012_00830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND012_00830 PF10414 Sirohaem synthase dimerisation region ND012_00835 PF01226 Formate/nitrite transporter ND012_00840 PF13806 Rieske-like [2Fe-2S] domain ND012_00845 PF18267 Rubredoxin NAD+ reductase C-terminal domain ND012_00845 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_00845 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND012_00845 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND012_00845 PF04324 BFD-like [2Fe-2S] binding domain ND012_00850 PF07969 Amidohydrolase family ND012_00855 PF07690 Major Facilitator Superfamily ND012_00870 PF00356 Bacterial regulatory proteins, lacI family ND012_00875 PF02056 Family 4 glycosyl hydrolase ND012_00875 PF11975 Family 4 glycosyl hydrolase C-terminal domain ND012_00880 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND012_00885 PF00117 Glutamine amidotransferase class-I ND012_00890 PF00202 Aminotransferase class-III ND012_00895 PF12805 FUSC-like inner membrane protein yccS ND012_00900 PF13545 Crp-like helix-turn-helix domain ND012_00900 PF00027 Cyclic nucleotide-binding domain ND012_00905 PF02566 OsmC-like protein ND012_00925 PF00156 Phosphoribosyl transferase domain ND012_00930 PF00291 Pyridoxal-phosphate dependent enzyme ND012_00935 PF00485 Phosphoribulokinase / Uridine kinase family ND012_00940 PF06794 Uncharacterised protein family (UPF0270) ND012_00945 PF00561 alpha/beta hydrolase fold ND012_00950 PF01810 LysE type translocator ND012_00955 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND012_00960 PF00535 Glycosyl transferase family 2 ND012_00965 PF00005 ABC transporter ND012_00965 PF12848 ABC transporter ND012_00970 PF02525 Flavodoxin-like fold ND012_00975 PF02254 TrkA-N domain ND012_00975 PF00999 Sodium/hydrogen exchanger family ND012_00980 PF09526 Probable metal-binding protein (DUF2387) ND012_00985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND012_00990 PF04102 SlyX ND012_00995 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND012_00995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND012_01000 PF13309 HTH domain ND012_01000 PF08348 YheO-like PAS domain ND012_01005 PF02635 DsrE/DsrF-like family ND012_01010 PF02635 DsrE/DsrF-like family ND012_01015 PF04077 DsrH like protein ND012_01020 PF00164 Ribosomal protein S12/S23 ND012_01025 PF00177 Ribosomal protein S7p/S5e ND012_01030 PF00009 Elongation factor Tu GTP binding domain ND012_01030 PF03144 Elongation factor Tu domain 2 ND012_01030 PF03764 Elongation factor G, domain IV ND012_01030 PF14492 Elongation Factor G, domain II ND012_01030 PF00679 Elongation factor G C-terminus ND012_01035 PF03143 Elongation factor Tu C-terminal domain ND012_01035 PF03144 Elongation factor Tu domain 2 ND012_01035 PF00009 Elongation factor Tu GTP binding domain ND012_01040 PF04324 BFD-like [2Fe-2S] binding domain ND012_01045 PF00210 Ferritin-like domain ND012_01050 PF00338 Ribosomal protein S10p/S20e ND012_01055 PF00297 Ribosomal protein L3 ND012_01060 PF00573 Ribosomal protein L4/L1 family ND012_01065 PF00276 Ribosomal protein L23 ND012_01070 PF00181 Ribosomal Proteins L2, RNA binding domain ND012_01070 PF03947 Ribosomal Proteins L2, C-terminal domain ND012_01075 PF00203 Ribosomal protein S19 ND012_01080 PF00237 Ribosomal protein L22p/L17e ND012_01085 PF07650 KH domain ND012_01085 PF00189 Ribosomal protein S3, C-terminal domain ND012_01090 PF00252 Ribosomal protein L16p/L10e ND012_01095 PF00831 Ribosomal L29 protein ND012_01100 PF00366 Ribosomal protein S17 ND012_01105 PF00238 Ribosomal protein L14p/L23e ND012_01110 PF00467 KOW motif ND012_01110 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ND012_01115 PF00281 Ribosomal protein L5 ND012_01115 PF00673 ribosomal L5P family C-terminus ND012_01120 PF00253 Ribosomal protein S14p/S29e ND012_01125 PF00410 Ribosomal protein S8 ND012_01130 PF00347 Ribosomal protein L6 ND012_01135 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ND012_01140 PF00333 Ribosomal protein S5, N-terminal domain ND012_01140 PF03719 Ribosomal protein S5, C-terminal domain ND012_01145 PF00327 Ribosomal protein L30p/L7e ND012_01150 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ND012_01155 PF00344 SecY translocase ND012_01160 PF00444 Ribosomal protein L36 ND012_01165 PF00416 Ribosomal protein S13/S18 ND012_01170 PF00411 Ribosomal protein S11 ND012_01175 PF00163 Ribosomal protein S4/S9 N-terminal domain ND012_01175 PF01479 S4 domain ND012_01180 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ND012_01180 PF01000 RNA polymerase Rpb3/RpoA insert domain ND012_01180 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ND012_01185 PF01196 Ribosomal protein L17 ND012_01190 PF13411 MerR HTH family regulatory protein ND012_01195 PF03889 Alternative ribosome-rescue factor A ND012_01200 PF01741 Large-conductance mechanosensitive channel, MscL ND012_01205 PF02080 TrkA-C domain ND012_01205 PF02254 TrkA-N domain ND012_01210 PF01189 16S rRNA methyltransferase RsmB/F ND012_01210 PF01029 NusB family ND012_01215 PF02911 Formyl transferase, C-terminal domain ND012_01215 PF00551 Formyl transferase ND012_01220 PF01327 Polypeptide deformylase ND012_01225 PF17782 DprA winged helix domain ND012_01225 PF02481 DNA recombination-mediator protein A ND012_01230 PF04361 Protein of unknown function (DUF494) ND012_01235 PF01396 Topoisomerase DNA binding C4 zinc finger ND012_01240 PF01300 Telomere recombination ND012_01245 PF08501 Shikimate dehydrogenase substrate binding domain ND012_01245 PF01488 Shikimate / quinate 5-dehydrogenase ND012_01245 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ND012_01250 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_01275 PF00474 Sodium:solute symporter family ND012_01280 PF04341 Protein of unknown function, DUF485 ND012_01285 PF13193 AMP-binding enzyme C-terminal domain ND012_01285 PF00501 AMP-binding enzyme ND012_01285 PF16177 Acetyl-coenzyme A synthetase N-terminus ND012_01290 PF00375 Sodium:dicarboxylate symporter family ND012_01295 PF04143 Sulphur transport ND012_01300 PF01206 Sulfurtransferase TusA ND012_01305 PF02719 Polysaccharide biosynthesis protein ND012_01310 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND012_01315 PF02350 UDP-N-acetylglucosamine 2-epimerase ND012_01320 PF03102 NeuB family ND012_01320 PF08666 SAF domain ND012_01330 PF00483 Nucleotidyl transferase ND012_01340 PF02348 Cytidylyltransferase ND012_01340 PF13472 GDSL-like Lipase/Acylhydrolase family ND012_01365 PF00795 Carbon-nitrogen hydrolase ND012_01365 PF02540 NAD synthase ND012_01370 PF00117 Glutamine amidotransferase class-I ND012_01375 PF00977 Histidine biosynthesis protein ND012_01380 PF08485 Polysaccharide biosynthesis protein C-terminal ND012_01380 PF02719 Polysaccharide biosynthesis protein ND012_01385 PF01370 NAD dependent epimerase/dehydratase family ND012_01390 PF02350 UDP-N-acetylglucosamine 2-epimerase ND012_01415 PF11412 Disulphide bond corrector protein DsbC ND012_01415 PF02683 Cytochrome C biogenesis protein transmembrane region ND012_01420 PF03091 CutA1 divalent ion tolerance protein ND012_01425 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND012_01430 PF00206 Lyase ND012_01430 PF10415 Fumarase C C-terminus ND012_01435 PF04186 FxsA cytoplasmic membrane protein ND012_01440 PF00166 Chaperonin 10 Kd subunit ND012_01445 PF00118 TCP-1/cpn60 chaperonin family ND012_01450 PF13698 Domain of unknown function (DUF4156) ND012_01455 PF04055 Radical SAM superfamily ND012_01460 PF09285 Elongation factor P, C-terminal ND012_01460 PF08207 Elongation factor P (EF-P) KOW-like domain ND012_01460 PF01132 Elongation factor P (EF-P) OB domain ND012_01465 PF18416 N-acetylglucosamine binding protein domain 2 ND012_01465 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND012_01470 PF00196 Bacterial regulatory proteins, luxR family ND012_01480 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_01480 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_01485 PF13954 PapC N-terminal domain ND012_01485 PF00577 Outer membrane usher protein ND012_01485 PF13953 PapC C-terminal domain ND012_01490 PF00419 Fimbrial protein ND012_01495 PF00893 Small Multidrug Resistance protein ND012_01500 PF08212 Lipocalin-like domain ND012_01505 PF02313 Fumarate reductase subunit D ND012_01510 PF02300 Fumarate reductase subunit C ND012_01515 PF13085 2Fe-2S iron-sulfur cluster binding domain ND012_01515 PF13183 4Fe-4S dicluster domain ND012_01520 PF00890 FAD binding domain ND012_01520 PF02910 Fumarate reductase flavoprotein C-term ND012_01525 PF00152 tRNA synthetases class II (D, K and N) ND012_01530 PF00924 Mechanosensitive ion channel ND012_01530 PF12795 Mechanosensitive ion channel porin domain ND012_01530 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND012_01535 PF02666 Phosphatidylserine decarboxylase ND012_01540 PF03193 RsgA GTPase ND012_01545 PF00929 Exonuclease ND012_01565 PF08331 Domain of unknown function (DUF1730) ND012_01570 PF01256 Carbohydrate kinase ND012_01570 PF03853 YjeF-related protein N-terminus ND012_01575 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ND012_01580 PF01520 N-acetylmuramoyl-L-alanine amidase ND012_01585 PF08676 MutL C terminal dimerisation domain ND012_01585 PF01119 DNA mismatch repair protein, C-terminal domain ND012_01595 PF17209 Hfq protein ND012_01600 PF01926 50S ribosome-binding GTPase ND012_01600 PF13167 GTP-binding GTPase N-terminal ND012_01600 PF16360 GTP-binding GTPase Middle Region ND012_01605 PF12221 Bacterial membrane protein N terminal ND012_01605 PF01145 SPFH domain / Band 7 family ND012_01610 PF01145 SPFH domain / Band 7 family ND012_01615 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ND012_01620 PF00709 Adenylosuccinate synthetase ND012_01625 PF02082 Transcriptional regulator ND012_01630 PF17876 Cold shock domain ND012_01630 PF08206 Ribonuclease B OB domain ND012_01630 PF00575 S1 RNA binding domain ND012_01630 PF08461 Ribonuclease R winged-helix domain ND012_01630 PF00773 RNB domain ND012_01635 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND012_01635 PF00588 SpoU rRNA Methylase family ND012_01655 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_01660 PF00577 Outer membrane usher protein ND012_01660 PF13954 PapC N-terminal domain ND012_01660 PF13953 PapC C-terminal domain ND012_01680 PF00326 Prolyl oligopeptidase family ND012_01690 PF01250 Ribosomal protein S6 ND012_01695 PF00436 Single-strand binding protein family ND012_01700 PF01084 Ribosomal protein S18 ND012_01705 PF01281 Ribosomal protein L9, N-terminal domain ND012_01705 PF03948 Ribosomal protein L9, C-terminal domain ND012_01710 PF08525 Opacity-associated protein A N-terminal motif ND012_01710 PF04225 Opacity-associated protein A LysM-like domain ND012_01715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND012_01715 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND012_01720 PF01814 Hemerythrin HHE cation binding domain ND012_01720 PF04405 Domain of Unknown function (DUF542) ND012_01725 PF00149 Calcineurin-like phosphoesterase ND012_01725 PF02872 5'-nucleotidase, C-terminal domain ND012_01730 PF00459 Inositol monophosphatase family ND012_01735 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ND012_01740 PF06526 Protein of unknown function (DUF1107) ND012_01745 PF03471 Transporter associated domain ND012_01745 PF01595 Cyclin M transmembrane N-terminal domain ND012_01745 PF00571 CBS domain ND012_01750 PF01625 Peptide methionine sulfoxide reductase ND012_01755 PF17243 POTRA domain TamA domain 1 ND012_01755 PF07244 Surface antigen variable number repeat ND012_01755 PF01103 Surface antigen ND012_01760 PF04357 TamB, inner membrane protein subunit of TAM complex ND012_01765 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ND012_01770 PF00719 Inorganic pyrophosphatase ND012_01775 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ND012_01780 PF02875 Mur ligase family, glutamate ligase domain ND012_01780 PF01225 Mur ligase family, catalytic domain ND012_01780 PF08245 Mur ligase middle domain ND012_01785 PF01316 Arginine repressor, DNA binding domain ND012_01785 PF02863 Arginine repressor, C-terminal domain ND012_01790 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ND012_01790 PF00056 lactate/malate dehydrogenase, NAD binding domain ND012_01795 PF13693 Winged helix-turn-helix DNA-binding ND012_01810 PF00348 Polyprenyl synthetase ND012_01815 PF00829 Ribosomal prokaryotic L21 protein ND012_01820 PF01016 Ribosomal L27 protein ND012_01825 PF00892 EamA-like transporter family ND012_01830 PF01018 GTP1/OBG ND012_01830 PF01926 50S ribosome-binding GTPase ND012_01835 PF00672 HAMP domain ND012_01835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_01835 PF00512 His Kinase A (phospho-acceptor) domain ND012_01840 PF00072 Response regulator receiver domain ND012_01840 PF00486 Transcriptional regulatory protein, C terminal ND012_01845 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ND012_01850 PF03449 Transcription elongation factor, N-terminal ND012_01850 PF01272 Transcription elongation factor, GreA/GreB, C-term ND012_01855 PF01985 CRS1 / YhbY (CRM) domain ND012_01860 PF01728 FtsJ-like methyltransferase ND012_01865 PF00004 ATPase family associated with various cellular activities (AAA) ND012_01865 PF17862 AAA+ lid domain ND012_01865 PF06480 FtsH Extracellular ND012_01865 PF01434 Peptidase family M41 ND012_01870 PF00809 Pterin binding enzyme ND012_01875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND012_01875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND012_01875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND012_01875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND012_01880 PF03840 Preprotein translocase SecG subunit ND012_01895 PF02576 RimP N-terminal domain ND012_01895 PF17384 RimP C-terminal SH3 domain ND012_01900 PF00575 S1 RNA binding domain ND012_01900 PF08529 NusA N-terminal domain ND012_01900 PF13184 NusA-like KH domain ND012_01905 PF11987 Translation-initiation factor 2 ND012_01905 PF04760 Translation initiation factor IF-2, N-terminal region ND012_01905 PF08364 Bacterial translation initiation factor IF-2 associated region ND012_01905 PF03144 Elongation factor Tu domain 2 ND012_01905 PF00009 Elongation factor Tu GTP binding domain ND012_01910 PF02033 Ribosome-binding factor A ND012_01915 PF01509 TruB family pseudouridylate synthase (N terminal domain) ND012_01915 PF16198 tRNA pseudouridylate synthase B C-terminal domain ND012_01915 PF09157 Pseudouridine synthase II TruB, C-terminal ND012_01920 PF00312 Ribosomal protein S15 ND012_01925 PF00575 S1 RNA binding domain ND012_01925 PF00013 KH domain ND012_01925 PF03725 3' exoribonuclease family, domain 2 ND012_01925 PF01138 3' exoribonuclease family, domain 1 ND012_01925 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ND012_01930 PF07719 Tetratricopeptide repeat ND012_01930 PF13181 Tetratricopeptide repeat ND012_01935 PF00271 Helicase conserved C-terminal domain ND012_01935 PF12343 Cold shock protein DEAD box A ND012_01935 PF00270 DEAD/DEAH box helicase ND012_01935 PF03880 DbpA RNA binding domain ND012_01940 PF00296 Luciferase-like monooxygenase ND012_01950 PF03313 Serine dehydratase alpha chain ND012_01955 PF01136 Peptidase family U32 ND012_01960 PF01136 Peptidase family U32 ND012_01965 PF02036 SCP-2 sterol transfer family ND012_01970 PF13508 Acetyltransferase (GNAT) domain ND012_01975 PF01541 GIY-YIG catalytic domain ND012_01980 PF13520 Amino acid permease ND012_01985 PF01276 Orn/Lys/Arg decarboxylase, major domain ND012_01985 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND012_01985 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND012_01990 PF10940 Protein of unknown function (DUF2618) ND012_02000 PF13460 NAD(P)H-binding ND012_02005 PF12706 Beta-lactamase superfamily domain ND012_02015 PF07969 Amidohydrolase family ND012_02020 PF00005 ABC transporter ND012_02025 PF00005 ABC transporter ND012_02030 PF06007 Phosphonate metabolism protein PhnJ ND012_02035 PF05861 Bacterial phosphonate metabolism protein (PhnI) ND012_02040 PF05845 Bacterial phosphonate metabolism protein (PhnH) ND012_02045 PF06754 Phosphonate metabolism protein PhnG ND012_02055 PF03477 ATP cone domain ND012_02055 PF13597 Anaerobic ribonucleoside-triphosphate reductase ND012_02060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND012_02060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND012_02065 PF06877 Regulator of ribonuclease activity B ND012_02070 PF00583 Acetyltransferase (GNAT) family ND012_02075 PF08264 Anticodon-binding domain of tRNA ND012_02075 PF00133 tRNA synthetases class I (I, L, M and V) ND012_02075 PF10458 Valyl tRNA synthetase tRNA binding arm ND012_02080 PF04364 DNA polymerase III chi subunit, HolC ND012_02085 PF00883 Cytosol aminopeptidase family, catalytic domain ND012_02085 PF02789 Cytosol aminopeptidase family, N-terminal domain ND012_02090 PF03739 Lipopolysaccharide export system permease LptF/LptG ND012_02095 PF03739 Lipopolysaccharide export system permease LptF/LptG ND012_02110 PF04851 Type III restriction enzyme, res subunit ND012_02110 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ND012_02110 PF00271 Helicase conserved C-terminal domain ND012_02110 PF08463 EcoEI R protein C-terminal ND012_02115 PF02384 N-6 DNA Methylase ND012_02120 PF01420 Type I restriction modification DNA specificity domain ND012_02145 PF04221 RelB antitoxin ND012_02150 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ND012_02225 PF01344 Kelch motif ND012_02230 PF06178 Oligogalacturonate-specific porin protein (KdgM) ND012_02235 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND012_02235 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND012_02235 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain ND012_02250 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND012_02250 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND012_02250 PF09092 Lyase, N terminal ND012_02250 PF09093 Lyase, catalytic ND012_02255 PF00884 Sulfatase ND012_02260 PF00455 DeoR C terminal sensor domain ND012_02260 PF08220 DeoR-like helix-turn-helix domain ND012_02265 PF08013 Tagatose 6 phosphate kinase ND012_02270 PF01380 SIS domain ND012_02275 PF03830 PTS system sorbose subfamily IIB component ND012_02280 PF03609 PTS system sorbose-specific iic component ND012_02285 PF03613 PTS system mannose/fructose/sorbose family IID component ND012_02295 PF01979 Amidohydrolase family ND012_02300 PF04962 KduI/IolB family ND012_02310 PF07470 Glycosyl Hydrolase Family 88 ND012_02315 PF04055 Radical SAM superfamily ND012_02315 PF13186 Iron-sulfur cluster-binding domain ND012_02320 PF00884 Sulfatase ND012_02330 PF01116 Fructose-bisphosphate aldolase class-II ND012_02340 PF10696 Protein of unknown function (DUF2501) ND012_02345 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND012_02360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND012_02365 PF00873 AcrB/AcrD/AcrF family ND012_02370 PF00465 Iron-containing alcohol dehydrogenase ND012_02375 PF02733 Dak1 domain ND012_02380 PF02734 DAK2 domain ND012_02385 PF00391 PEP-utilising enzyme, mobile domain ND012_02385 PF03610 PTS system fructose IIA component ND012_02385 PF05524 PEP-utilising enzyme, N-terminal ND012_02385 PF00381 PTS HPr component phosphorylation site ND012_02390 PF02954 Bacterial regulatory protein, Fis family ND012_02390 PF00158 Sigma-54 interaction domain ND012_02390 PF00989 PAS fold ND012_02395 PF00990 Diguanylate cyclase, GGDEF domain ND012_02400 PF07256 Protein of unknown function (DUF1435) ND012_02420 PF05175 Methyltransferase small domain ND012_02420 PF08468 Methyltransferase small domain N-terminal ND012_02425 PF03603 DNA polymerase III psi subunit ND012_02430 PF00583 Acetyltransferase (GNAT) family ND012_02435 PF00009 Elongation factor Tu GTP binding domain ND012_02435 PF03144 Elongation factor Tu domain 2 ND012_02435 PF16658 Class II release factor RF3, C-terminal domain ND012_02440 PF04972 BON domain ND012_02445 PF07043 Protein of unknown function (DUF1328) ND012_02450 PF01734 Patatin-like phospholipase ND012_02455 PF01026 TatD related DNase ND012_02460 PF07670 Nucleoside recognition ND012_02460 PF01773 Na+ dependent nucleoside transporter N-terminus ND012_02460 PF07662 Na+ dependent nucleoside transporter C-terminus ND012_02465 PF01791 DeoC/LacD family aldolase ND012_02470 PF02885 Glycosyl transferase family, helical bundle domain ND012_02470 PF00591 Glycosyl transferase family, a/b domain ND012_02470 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ND012_02475 PF01676 Metalloenzyme superfamily ND012_02480 PF01048 Phosphorylase superfamily ND012_02485 PF10144 Bacterial virulence factor haemolysin ND012_02490 PF18429 Domain of unknown function (DUF5609) ND012_02495 PF18073 Rubredoxin metal binding domain ND012_02500 PF13521 AAA domain ND012_02500 PF01381 Helix-turn-helix ND012_02505 PF00005 ABC transporter ND012_02505 PF12848 ABC transporter ND012_02520 PF00690 Cation transporter/ATPase, N-terminus ND012_02520 PF00689 Cation transporting ATPase, C-terminus ND012_02525 PF14718 Soluble lytic murein transglycosylase L domain ND012_02525 PF01464 Transglycosylase SLT domain ND012_02530 PF01371 Trp repressor protein ND012_02535 PF01931 Protein of unknown function DUF84 ND012_02540 PF00300 Histidine phosphatase superfamily (branch 1) ND012_02545 PF06445 GyrI-like small molecule binding domain ND012_02545 PF12833 Helix-turn-helix domain ND012_02550 PF05981 CreA protein ND012_02555 PF00072 Response regulator receiver domain ND012_02555 PF00486 Transcriptional regulatory protein, C terminal ND012_02565 PF08254 Threonine leader peptide ND012_02570 PF00742 Homoserine dehydrogenase ND012_02570 PF00696 Amino acid kinase family ND012_02570 PF01842 ACT domain ND012_02570 PF13840 ACT domain ND012_02570 PF03447 Homoserine dehydrogenase, NAD binding domain ND012_02575 PF08544 GHMP kinases C terminal ND012_02575 PF00288 GHMP kinases N terminal domain ND012_02580 PF00291 Pyridoxal-phosphate dependent enzyme ND012_02580 PF14821 Threonine synthase N terminus ND012_02585 PF03883 Peroxide stress protein YaaA ND012_02590 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND012_02595 PF00994 Probable molybdopterin binding domain ND012_02600 PF07690 Major Facilitator Superfamily ND012_02610 PF01184 GPR1/FUN34/yaaH family ND012_02615 PF00012 Hsp70 protein ND012_02620 PF01556 DnaJ C terminal domain ND012_02620 PF00226 DnaJ domain ND012_02620 PF00684 DnaJ central domain ND012_02625 PF06965 Na+/H+ antiporter 1 ND012_02630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_02630 PF03466 LysR substrate binding domain ND012_02635 PF01649 Ribosomal protein S20 ND012_02640 PF06574 FAD synthetase ND012_02640 PF01687 Riboflavin kinase ND012_02645 PF08264 Anticodon-binding domain of tRNA ND012_02645 PF00133 tRNA synthetases class I (I, L, M and V) ND012_02645 PF06827 Zinc finger found in FPG and IleRS ND012_02650 PF01252 Signal peptidase (SPase) II ND012_02655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND012_02660 PF02401 LytB protein ND012_02665 PF05173 Dihydrodipicolinate reductase, C-terminus ND012_02665 PF01113 Dihydrodipicolinate reductase, N-terminus ND012_02670 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ND012_02670 PF00117 Glutamine amidotransferase class-I ND012_02675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND012_02675 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ND012_02675 PF02142 MGS-like domain ND012_02680 PF01810 LysE type translocator ND012_02685 PF06738 Putative threonine/serine exporter ND012_02690 PF12821 Threonine/Serine exporter, ThrE ND012_02695 PF00186 Dihydrofolate reductase ND012_02705 PF00149 Calcineurin-like phosphoesterase ND012_02710 PF04379 ApaG domain ND012_02715 PF00398 Ribosomal RNA adenine dimethylase ND012_02720 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ND012_02725 PF09312 SurA N-terminal domain ND012_02725 PF00639 PPIC-type PPIASE domain ND012_02730 PF03968 OstA-like protein ND012_02730 PF04453 LPS transport system D ND012_02735 PF00226 DnaJ domain ND012_02735 PF05099 Tellurite resistance protein TerB ND012_02740 PF00849 RNA pseudouridylate synthase ND012_02745 PF12137 RNA polymerase recycling family C-terminal ND012_02745 PF00176 SNF2 family N-terminal domain ND012_02745 PF18339 RapA N-terminal Tudor like domain 1 ND012_02745 PF18337 RapA N-terminal Tudor like domain ND012_02745 PF00271 Helicase conserved C-terminal domain ND012_02750 PF00136 DNA polymerase family B ND012_02750 PF03104 DNA polymerase family B, exonuclease domain ND012_02755 PF09335 SNARE associated Golgi protein ND012_02760 PF00005 ABC transporter ND012_02765 PF00528 Binding-protein-dependent transport system inner membrane component ND012_02775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_02775 PF12793 Sugar transport-related sRNA regulator N-term ND012_02785 PF07690 Major Facilitator Superfamily ND012_02790 PF00694 Aconitase C-terminal domain ND012_02795 PF00330 Aconitase family (aconitate hydratase) ND012_02800 PF00180 Isocitrate/isopropylmalate dehydrogenase ND012_02805 PF08502 LeuA allosteric (dimerisation) domain ND012_02805 PF00682 HMGL-like ND012_02815 PF00501 AMP-binding enzyme ND012_02820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND012_02820 PF00205 Thiamine pyrophosphate enzyme, central domain ND012_02820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND012_02825 PF10369 Small subunit of acetolactate synthase ND012_02830 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND012_02830 PF00356 Bacterial regulatory proteins, lacI family ND012_02835 PF01797 Transposase IS200 like ND012_02840 PF12323 Helix-turn-helix domain ND012_02840 PF01385 Probable transposase ND012_02840 PF07282 Putative transposase DNA-binding domain ND012_02845 PF06610 L-alanine exporter ND012_02850 PF02381 MraZ protein, putative antitoxin-like ND012_02855 PF01795 MraW methylase family ND012_02860 PF04999 Cell division protein FtsL ND012_02865 PF03717 Penicillin-binding Protein dimerisation domain ND012_02865 PF00905 Penicillin binding protein transpeptidase domain ND012_02870 PF01225 Mur ligase family, catalytic domain ND012_02870 PF02875 Mur ligase family, glutamate ligase domain ND012_02870 PF08245 Mur ligase middle domain ND012_02875 PF01225 Mur ligase family, catalytic domain ND012_02875 PF02875 Mur ligase family, glutamate ligase domain ND012_02875 PF08245 Mur ligase middle domain ND012_02880 PF00953 Glycosyl transferase family 4 ND012_02880 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ND012_02885 PF08245 Mur ligase middle domain ND012_02885 PF02875 Mur ligase family, glutamate ligase domain ND012_02890 PF01098 Cell cycle protein ND012_02895 PF03033 Glycosyltransferase family 28 N-terminal domain ND012_02895 PF04101 Glycosyltransferase family 28 C-terminal domain ND012_02900 PF08245 Mur ligase middle domain ND012_02900 PF02875 Mur ligase family, glutamate ligase domain ND012_02900 PF01225 Mur ligase family, catalytic domain ND012_02905 PF07478 D-ala D-ala ligase C-terminus ND012_02905 PF01820 D-ala D-ala ligase N-terminus ND012_02910 PF08478 POTRA domain, FtsQ-type ND012_02910 PF03799 Cell division protein FtsQ ND012_02915 PF02491 SHS2 domain inserted in FTSA ND012_02920 PF00091 Tubulin/FtsZ family, GTPase domain ND012_02920 PF12327 FtsZ family, C-terminal domain ND012_02925 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ND012_02935 PF06558 Secretion monitor precursor protein (SecM) ND012_02940 PF07517 SecA DEAD-like domain ND012_02940 PF01043 SecA preprotein cross-linking domain ND012_02940 PF07516 SecA Wing and Scaffold domain ND012_02940 PF02810 SEC-C motif ND012_02945 PF00293 NUDIX domain ND012_02950 PF03884 DNA gyrase inhibitor YacG ND012_02955 PF07072 Cell division protein ND012_02960 PF01121 Dephospho-CoA kinase ND012_02965 PF00478 IMP dehydrogenase / GMP reductase domain ND012_02970 PF00482 Type II secretion system (T2SS), protein F ND012_02975 PF00437 Type II/IV secretion system protein ND012_02975 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ND012_02980 PF07963 Prokaryotic N-terminal methylation motif ND012_02985 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ND012_02985 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ND012_02990 PF01510 N-acetylmuramoyl-L-alanine amidase ND012_02995 PF17113 Regulatory signalling modulator protein AmpE ND012_03000 PF00324 Amino acid permease ND012_03005 PF07729 FCD domain ND012_03005 PF00392 Bacterial regulatory proteins, gntR family ND012_03010 PF17831 Pyruvate dehydrogenase E1 component middle domain ND012_03010 PF00456 Transketolase, thiamine diphosphate binding domain ND012_03015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND012_03015 PF00364 Biotin-requiring enzyme ND012_03015 PF02817 e3 binding domain ND012_03020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND012_03020 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_03030 PF06434 Aconitate hydratase 2 N-terminus ND012_03030 PF00330 Aconitase family (aconitate hydratase) ND012_03030 PF11791 Aconitate B N-terminal domain ND012_03035 PF06062 Uncharacterised protein family (UPF0231) ND012_03040 PF00892 EamA-like transporter family ND012_03045 PF02675 S-adenosylmethionine decarboxylase ND012_03050 PF17284 Spermidine synthase tetramerisation domain ND012_03055 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND012_03060 PF00394 Multicopper oxidase ND012_03060 PF07731 Multicopper oxidase ND012_03060 PF07732 Multicopper oxidase ND012_03060 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND012_03065 PF00156 Phosphoribosyl transferase domain ND012_03070 PF00484 Carbonic anhydrase ND012_03075 PF00005 ABC transporter ND012_03080 PF01061 ABC-2 type transporter ND012_03085 PF01522 Polysaccharide deacetylase ND012_03090 PF02261 Aspartate decarboxylase ND012_03095 PF02569 Pantoate-beta-alanine ligase ND012_03100 PF02548 Ketopantoate hydroxymethyltransferase ND012_03105 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ND012_03110 PF01743 Poly A polymerase head domain ND012_03110 PF12626 Polymerase A arginine-rich C-terminus ND012_03110 PF12627 Probable RNA and SrmB- binding site of polymerase A ND012_03115 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND012_03120 PF01258 Prokaryotic dksA/traR C4-type zinc finger ND012_03125 PF17746 SfsA N-terminal OB domain ND012_03125 PF03749 Sugar fermentation stimulation protein RE domain ND012_03130 PF02834 LigT like Phosphoesterase ND012_03135 PF00270 DEAD/DEAH box helicase ND012_03135 PF04408 Helicase associated domain (HA2) ND012_03135 PF00271 Helicase conserved C-terminal domain ND012_03135 PF08482 ATP-dependent helicase C-terminal ND012_03140 PF00912 Transglycosylase ND012_03140 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ND012_03140 PF00905 Penicillin binding protein transpeptidase domain ND012_03140 PF14814 Bifunctional transglycosylase second domain ND012_03145 PF00202 Aminotransferase class-III ND012_03150 PF00654 Voltage gated chloride channel ND012_03155 PF01521 Iron-sulphur cluster biosynthesis ND012_03160 PF03458 UPF0126 domain ND012_03165 PF01497 Periplasmic binding protein ND012_03170 PF01048 Phosphorylase superfamily ND012_03175 PF13286 Phosphohydrolase-associated domain ND012_03175 PF01966 HD domain ND012_03180 PF00595 PDZ domain ND012_03185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_03185 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND012_03185 PF00072 Response regulator receiver domain ND012_03185 PF01627 Hpt domain ND012_03185 PF00512 His Kinase A (phospho-acceptor) domain ND012_03185 PF00672 HAMP domain ND012_03190 PF05958 tRNA (Uracil-5-)-methyltransferase ND012_03190 PF01938 TRAM domain ND012_03195 PF02824 TGS domain ND012_03195 PF13291 ACT domain ND012_03195 PF04607 Region found in RelA / SpoT proteins ND012_03200 PF03819 MazG nucleotide pyrophosphohydrolase domain ND012_03205 PF00117 Glutamine amidotransferase class-I ND012_03205 PF06418 CTP synthase N-terminus ND012_03210 PF03952 Enolase, N-terminal domain ND012_03210 PF00113 Enolase, C-terminal TIM barrel domain ND012_03215 PF04055 Radical SAM superfamily ND012_03220 PF01242 6-pyruvoyl tetrahydropterin synthase ND012_03225 PF00667 FAD binding domain ND012_03225 PF00258 Flavodoxin ND012_03225 PF00175 Oxidoreductase NAD-binding domain ND012_03230 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND012_03230 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND012_03235 PF01507 Phosphoadenosine phosphosulfate reductase family ND012_03250 PF04389 Peptidase family M28 ND012_03255 PF10414 Sirohaem synthase dimerisation region ND012_03255 PF14824 Sirohaem biosynthesis protein central ND012_03255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND012_03260 PF01507 Phosphoadenosine phosphosulfate reductase family ND012_03265 PF00009 Elongation factor Tu GTP binding domain ND012_03275 PF12084 Protein of unknown function (DUF3561) ND012_03280 PF04977 Septum formation initiator ND012_03285 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ND012_03290 PF02542 YgbB family ND012_03295 PF01142 tRNA pseudouridine synthase D (TruD) ND012_03300 PF01975 Survival protein SurE ND012_03310 PF01551 Peptidase family M23 ND012_03310 PF01476 LysM domain ND012_03315 PF04542 Sigma-70 region 2 ND012_03315 PF04539 Sigma-70 region 3 ND012_03315 PF04545 Sigma-70, region 4 ND012_03315 PF00140 Sigma-70 factor, region 1.2 ND012_03320 PF05192 MutS domain III ND012_03320 PF05188 MutS domain II ND012_03320 PF01624 MutS domain I ND012_03320 PF00488 MutS domain V ND012_03320 PF05190 MutS family domain IV ND012_03355 PF13193 AMP-binding enzyme C-terminal domain ND012_03355 PF00550 Phosphopantetheine attachment site ND012_03355 PF00501 AMP-binding enzyme ND012_03355 PF00668 Condensation domain ND012_03390 PF05681 Fumarate hydratase (Fumerase) ND012_03390 PF05683 Fumarase C-terminus ND012_03395 PF07690 Major Facilitator Superfamily ND012_03400 PF02464 Competence-damaged protein ND012_03405 PF00154 recA bacterial DNA recombination protein ND012_03410 PF02631 RecX family ND012_03415 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND012_03415 PF02272 DHHA1 domain ND012_03415 PF01411 tRNA synthetases class II (A) ND012_03420 PF02599 Global regulator protein family ND012_03445 PF01411 tRNA synthetases class II (A) ND012_03445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND012_03450 PF13419 Haloacid dehalogenase-like hydrolase ND012_03455 PF09335 SNARE associated Golgi protein ND012_03460 PF04262 Glutamate-cysteine ligase ND012_03465 PF02664 S-Ribosylhomocysteinase (LuxS) ND012_03470 PF03471 Transporter associated domain ND012_03470 PF01595 Cyclin M transmembrane N-terminal domain ND012_03470 PF00571 CBS domain ND012_03475 PF01578 Cytochrome C assembly protein ND012_03480 PF02978 Signal peptide binding domain ND012_03480 PF02881 SRP54-type protein, helical bundle domain ND012_03480 PF00448 SRP54-type protein, GTPase domain ND012_03485 PF00886 Ribosomal protein S16 ND012_03490 PF05239 PRC-barrel domain ND012_03490 PF01782 RimM N-terminal domain ND012_03495 PF01746 tRNA (Guanine-1)-methyltransferase ND012_03500 PF01245 Ribosomal protein L19 ND012_03505 PF04338 Protein of unknown function, DUF481 ND012_03510 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND012_03515 PF00072 Response regulator receiver domain ND012_03515 PF04397 LytTr DNA-binding domain ND012_03520 PF00793 DAHP synthetase I family ND012_03525 PF01817 Chorismate mutase type II ND012_03525 PF02153 Prephenate dehydrogenase ND012_03530 PF01817 Chorismate mutase type II ND012_03530 PF00800 Prephenate dehydratase ND012_03540 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND012_03545 PF13525 Outer membrane lipoprotein ND012_03550 PF00849 RNA pseudouridylate synthase ND012_03550 PF01479 S4 domain ND012_03555 PF02578 Multi-copper polyphenol oxidoreductase laccase ND012_03560 PF10431 C-terminal, D2-small domain, of ClpB protein ND012_03560 PF02861 Clp amino terminal domain, pathogenicity island component ND012_03560 PF17871 AAA lid domain ND012_03560 PF00004 ATPase family associated with various cellular activities (AAA) ND012_03560 PF07724 AAA domain (Cdc48 subfamily) ND012_03595 PF03372 Endonuclease/Exonuclease/phosphatase family ND012_03600 PF01464 Transglycosylase SLT domain ND012_03600 PF01476 LysM domain ND012_03605 PF00753 Metallo-beta-lactamase superfamily ND012_03605 PF16123 Hydroxyacylglutathione hydrolase C-terminus ND012_03610 PF08241 Methyltransferase domain ND012_03615 PF00075 RNase H ND012_03620 PF00929 Exonuclease ND012_03630 PF09317 Domain of unknown function (DUF1974) ND012_03630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND012_03630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND012_03635 PF13580 SIS domain ND012_03640 PF13230 Glutamine amidotransferases class-II ND012_03645 PF03734 L,D-transpeptidase catalytic domain ND012_03650 PF11973 NQRA C-terminal domain ND012_03650 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ND012_03655 PF03116 NQR2, RnfD, RnfE family ND012_03660 PF04205 FMN-binding domain ND012_03665 PF02508 Rnf-Nqr subunit, membrane protein ND012_03670 PF02508 Rnf-Nqr subunit, membrane protein ND012_03675 PF00970 Oxidoreductase FAD-binding domain ND012_03675 PF00175 Oxidoreductase NAD-binding domain ND012_03675 PF00111 2Fe-2S iron-sulfur cluster binding domain ND012_03680 PF02424 ApbE family ND012_03685 PF04400 (Na+)-NQR maturation NqrM ND012_03690 PF03009 Glycerophosphoryl diester phosphodiesterase family ND012_03695 PF00817 impB/mucB/samB family ND012_03695 PF11799 impB/mucB/samB family C-terminal domain ND012_03695 PF11798 IMS family HHH motif ND012_03700 PF07687 Peptidase dimerisation domain ND012_03700 PF01546 Peptidase family M20/M25/M40 ND012_03705 PF00156 Phosphoribosyl transferase domain ND012_03710 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ND012_03715 PF07417 Sigma factor-binding transcriptional regulator Crl ND012_03720 PF00696 Amino acid kinase family ND012_03720 PF01472 PUA domain ND012_03725 PF00171 Aldehyde dehydrogenase family ND012_03730 PF07238 PilZ domain ND012_03730 PF07317 Flagellar regulator YcgR ND012_03755 PF07715 TonB-dependent Receptor Plug Domain ND012_03755 PF00593 TonB dependent receptor ND012_03760 PF01202 Shikimate kinase ND012_03780 PF07302 AroM protein ND012_03785 PF06865 Pyrimidine/purine nucleoside phosphorylase ND012_03790 PF04381 Putative exonuclease, RdgC ND012_03795 PF00480 ROK family ND012_03800 PF13476 AAA domain ND012_03805 PF00149 Calcineurin-like phosphoesterase ND012_03805 PF12320 Type 5 capsule protein repressor C-terminal domain ND012_03810 PF00072 Response regulator receiver domain ND012_03810 PF00486 Transcriptional regulatory protein, C terminal ND012_03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_03815 PF00512 His Kinase A (phospho-acceptor) domain ND012_03815 PF11808 Phosphate regulon sensor protein PhoR ND012_03815 PF00989 PAS fold ND012_03820 PF12849 PBP superfamily domain ND012_03825 PF05525 Branched-chain amino acid transport protein ND012_03830 PF00324 Amino acid permease ND012_03835 PF00128 Alpha amylase, catalytic domain ND012_03835 PF02903 Alpha amylase, N-terminal ig-like domain ND012_03845 PF10417 C-terminal domain of 1-Cys peroxiredoxin ND012_03845 PF00578 AhpC/TSA family ND012_03850 PF04336 Acyl carrier protein phosphodiesterase ND012_03855 PF02547 Queuosine biosynthesis protein ND012_03860 PF01702 Queuine tRNA-ribosyltransferase ND012_03865 PF02699 Preprotein translocase subunit ND012_03870 PF07549 SecD/SecF GG Motif ND012_03870 PF13721 SecD export protein N-terminal TM region ND012_03870 PF02355 Protein export membrane protein ND012_03875 PF02355 Protein export membrane protein ND012_03875 PF07549 SecD/SecF GG Motif ND012_03880 PF03477 ATP cone domain ND012_03885 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND012_03885 PF01872 RibD C-terminal domain ND012_03890 PF00885 6,7-dimethyl-8-ribityllumazine synthase ND012_03895 PF01029 NusB family ND012_03900 PF00586 AIR synthase related protein, N-terminal domain ND012_03900 PF02769 AIR synthase related protein, C-terminal domain ND012_03905 PF04608 Phosphatidylglycerophosphatase A ND012_03910 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ND012_03910 PF02780 Transketolase, C-terminal domain ND012_03910 PF02779 Transketolase, pyrimidine binding domain ND012_03915 PF00348 Polyprenyl synthetase ND012_03920 PF02609 Exonuclease VII small subunit ND012_03925 PF02568 Thiamine biosynthesis protein (ThiI) ND012_03925 PF02926 THUMP domain ND012_03930 PF02954 Bacterial regulatory protein, Fis family ND012_03930 PF14532 Sigma-54 interaction domain ND012_03930 PF00072 Response regulator receiver domain ND012_03935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_03935 PF00512 His Kinase A (phospho-acceptor) domain ND012_03935 PF00672 HAMP domain ND012_03945 PF07690 Major Facilitator Superfamily ND012_03950 PF01965 DJ-1/PfpI family ND012_03955 PF02558 Ketopantoate reductase PanE/ApbA ND012_03955 PF08546 Ketopantoate reductase PanE/ApbA C terminal ND012_03960 PF04461 Protein of unknown function (DUF520) ND012_03965 PF07690 Major Facilitator Superfamily ND012_03970 PF01040 UbiA prenyltransferase family ND012_03975 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ND012_03980 PF00510 Cytochrome c oxidase subunit III ND012_03985 PF00115 Cytochrome C and Quinol oxidase polypeptide I ND012_03990 PF06481 COX Aromatic Rich Motif ND012_03990 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ND012_03995 PF03502 Nucleoside-specific channel-forming protein, Tsx ND012_04000 PF07690 Major Facilitator Superfamily ND012_04005 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND012_04005 PF03923 Uncharacterized lipoprotein ND012_04010 PF01722 BolA-like protein ND012_04015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND012_04015 PF05698 Bacterial trigger factor protein (TF) C-terminus ND012_04015 PF05697 Bacterial trigger factor protein (TF) ND012_04020 PF00574 Clp protease ND012_04025 PF07724 AAA domain (Cdc48 subfamily) ND012_04025 PF10431 C-terminal, D2-small domain, of ClpB protein ND012_04025 PF06689 ClpX C4-type zinc finger ND012_04030 PF00004 ATPase family associated with various cellular activities (AAA) ND012_04030 PF05362 Lon protease (S16) C-terminal proteolytic domain ND012_04030 PF02190 ATP-dependent protease La (LON) substrate-binding domain ND012_04035 PF00216 Bacterial DNA-binding protein ND012_04040 PF13145 PPIC-type PPIASE domain ND012_04055 PF06508 Queuosine biosynthesis protein QueC ND012_04060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_04060 PF12793 Sugar transport-related sRNA regulator N-term ND012_04075 PF01037 Lrp/AsnC ligand binding domain ND012_04075 PF13404 AsnC-type helix-turn-helix domain ND012_04080 PF00664 ABC transporter transmembrane region ND012_04080 PF00005 ABC transporter ND012_04085 PF00664 ABC transporter transmembrane region ND012_04085 PF00005 ABC transporter ND012_04090 PF00543 Nitrogen regulatory protein P-II ND012_04095 PF00909 Ammonium Transporter Family ND012_04105 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND012_04115 PF05321 Haemolysin expression modulating protein ND012_04120 PF10757 Biofilm formation regulator YbaJ ND012_04130 PF00444 Ribosomal protein L36 ND012_04135 PF01197 Ribosomal protein L31 ND012_04140 PF00873 AcrB/AcrD/AcrF family ND012_04145 PF00529 HlyD membrane-fusion protein of T1SS ND012_04145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND012_04150 PF00440 Bacterial regulatory proteins, tetR family ND012_04150 PF08361 MAATS-type transcriptional repressor, C-terminal region ND012_04155 PF02635 DsrE/DsrF-like family ND012_04160 PF00924 Mechanosensitive ion channel ND012_04160 PF12795 Mechanosensitive ion channel porin domain ND012_04160 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND012_04165 PF10689 Protein of unknown function (DUF2496) ND012_04175 PF04304 Protein of unknown function (DUF454) ND012_04180 PF00156 Phosphoribosyl transferase domain ND012_04185 PF01970 Tripartite tricarboxylate transporter TctA family ND012_04200 PF00072 Response regulator receiver domain ND012_04200 PF00486 Transcriptional regulatory protein, C terminal ND012_04205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_04205 PF00512 His Kinase A (phospho-acceptor) domain ND012_04210 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ND012_04210 PF12170 DNA polymerase III tau subunit V interacting with alpha ND012_04210 PF12169 DNA polymerase III subunits gamma and tau domain III ND012_04215 PF02575 YbaB/EbfC DNA-binding family ND012_04220 PF02132 RecR protein ND012_04220 PF13662 Toprim domain ND012_04225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_04225 PF00183 Hsp90 protein ND012_04230 PF05191 Adenylate kinase, active site lid ND012_04235 PF00762 Ferrochelatase ND012_04240 PF02706 Chain length determinant protein ND012_04245 PF00294 pfkB family carbohydrate kinase ND012_04250 PF00999 Sodium/hydrogen exchanger family ND012_04250 PF02254 TrkA-N domain ND012_04255 PF02872 5'-nucleotidase, C-terminal domain ND012_04255 PF00149 Calcineurin-like phosphoesterase ND012_04260 PF04073 Aminoacyl-tRNA editing domain ND012_04265 PF01963 TraB family ND012_04270 PF00403 Heavy-metal-associated domain ND012_04275 PF13411 MerR HTH family regulatory protein ND012_04280 PF01957 NfeD-like C-terminal, partner-binding ND012_04285 PF01145 SPFH domain / Band 7 family ND012_04285 PF16200 C-terminal region of band_7 ND012_04290 PF00085 Thioredoxin ND012_04295 PF00106 short chain dehydrogenase ND012_04300 PF13472 GDSL-like Lipase/Acylhydrolase family ND012_04305 PF00005 ABC transporter ND012_04315 PF02222 ATP-grasp domain ND012_04315 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ND012_04320 PF00731 AIR carboxylase ND012_04325 PF00149 Calcineurin-like phosphoesterase ND012_04330 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND012_04335 PF09190 DALR domain ND012_04335 PF01406 tRNA synthetases class I (C) catalytic domain ND012_04350 PF00419 Fimbrial protein ND012_04355 PF13953 PapC C-terminal domain ND012_04355 PF00577 Outer membrane usher protein ND012_04355 PF13954 PapC N-terminal domain ND012_04360 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_04360 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_04395 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ND012_04395 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ND012_04405 PF01022 Bacterial regulatory protein, arsR family ND012_04410 PF02040 Arsenical pump membrane protein ND012_04415 PF03960 ArsC family ND012_04425 PF00501 AMP-binding enzyme ND012_04450 PF01292 Prokaryotic cytochrome b561 ND012_04460 PF00343 Carbohydrate phosphorylase ND012_04470 PF00486 Transcriptional regulatory protein, C terminal ND012_04470 PF00072 Response regulator receiver domain ND012_04480 PF00483 Nucleotidyl transferase ND012_04490 PF00535 Glycosyl transferase family 2 ND012_04490 PF03552 Cellulose synthase ND012_04490 PF07238 PilZ domain ND012_04510 PF16355 Domain of unknown function (DUF4982) ND012_04510 PF00703 Glycosyl hydrolases family 2 ND012_04510 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND012_04510 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND012_04515 PF01627 Hpt domain ND012_04515 PF00512 His Kinase A (phospho-acceptor) domain ND012_04515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_04515 PF00672 HAMP domain ND012_04515 PF00072 Response regulator receiver domain ND012_04515 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND012_04520 PF00072 Response regulator receiver domain ND012_04520 PF00990 Diguanylate cyclase, GGDEF domain ND012_04525 PF00440 Bacterial regulatory proteins, tetR family ND012_04550 PF00196 Bacterial regulatory proteins, luxR family ND012_04555 PF00313 'Cold-shock' DNA-binding domain ND012_04560 PF00313 'Cold-shock' DNA-binding domain ND012_04565 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ND012_04575 PF05230 MASE2 domain ND012_04575 PF00990 Diguanylate cyclase, GGDEF domain ND012_04580 PF02416 mttA/Hcf106 family ND012_04585 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ND012_04585 PF04055 Radical SAM superfamily ND012_04590 PF03099 Biotin/lipoate A/B protein ligase family ND012_04595 PF04359 Protein of unknown function (DUF493) ND012_04600 PF07943 Penicillin-binding protein 5, C-terminal domain ND012_04600 PF00768 D-alanyl-D-alanine carboxypeptidase ND012_04605 PF03330 Lytic transglycolase ND012_04605 PF05036 Sporulation related domain ND012_04610 PF01098 Cell cycle protein ND012_04615 PF00905 Penicillin binding protein transpeptidase domain ND012_04615 PF03717 Penicillin-binding Protein dimerisation domain ND012_04620 PF02590 Predicted SPOUT methyltransferase ND012_04630 PF01467 Cytidylyltransferase-like ND012_04635 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ND012_04635 PF06144 DNA polymerase III, delta subunit ND012_04640 PF04390 Lipopolysaccharide-assembly ND012_04645 PF08264 Anticodon-binding domain of tRNA ND012_04645 PF00133 tRNA synthetases class I (I, L, M and V) ND012_04645 PF13603 Leucyl-tRNA synthetase, Domain 2 ND012_04650 PF07295 Zinc-ribbon containing domain ND012_04655 PF00005 ABC transporter ND012_04660 PF00528 Binding-protein-dependent transport system inner membrane component ND012_04665 PF00528 Binding-protein-dependent transport system inner membrane component ND012_04670 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_04675 PF00795 Carbon-nitrogen hydrolase ND012_04680 PF03471 Transporter associated domain ND012_04680 PF00571 CBS domain ND012_04685 PF02130 Uncharacterized protein family UPF0054 ND012_04690 PF02562 PhoH-like protein ND012_04695 PF04055 Radical SAM superfamily ND012_04695 PF01938 TRAM domain ND012_04695 PF00919 Uncharacterized protein family UPF0004 ND012_04700 PF01494 FAD binding domain ND012_04735 PF00733 Asparagine synthase ND012_04735 PF13537 Glutamine amidotransferase domain ND012_04740 PF13344 Haloacid dehalogenase-like hydrolase ND012_04745 PF01047 MarR family ND012_04745 PF00480 ROK family ND012_04750 PF01979 Amidohydrolase family ND012_04755 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ND012_04760 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND012_04760 PF00367 phosphotransferase system, EIIB ND012_04760 PF02378 Phosphotransferase system, EIIC ND012_04765 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND012_04765 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ND012_04770 PF03573 outer membrane porin, OprD family ND012_04775 PF13982 YbfN-like lipoprotein ND012_04780 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ND012_04780 PF03173 Putative carbohydrate binding domain ND012_04780 PF02838 Glycosyl hydrolase family 20, domain 2 ND012_04780 PF00728 Glycosyl hydrolase family 20, catalytic domain ND012_04785 PF01475 Ferric uptake regulator family ND012_04790 PF00258 Flavodoxin ND012_04795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_04795 PF02203 Tar ligand binding domain homologue ND012_04795 PF00672 HAMP domain ND012_04800 PF01402 Ribbon-helix-helix protein, copG family ND012_04805 PF12697 Alpha/beta hydrolase family ND012_04810 PF03925 SeqA protein C-terminal domain ND012_04810 PF17206 SeqA protein N-terminal domain ND012_04815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND012_04815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND012_04815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND012_04815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND012_04825 PF00072 Response regulator receiver domain ND012_04825 PF00486 Transcriptional regulatory protein, C terminal ND012_04830 PF13492 GAF domain ND012_04830 PF13493 Domain of unknown function (DUF4118) ND012_04830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_04830 PF00512 His Kinase A (phospho-acceptor) domain ND012_04830 PF02702 Osmosensitive K+ channel His kinase sensor domain ND012_04835 PF02669 K+-transporting ATPase, c chain ND012_04845 PF03814 Potassium-transporting ATPase A subunit ND012_04850 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) ND012_04855 PF10725 Protein of unknown function (DUF2517) ND012_04860 PF08349 Protein of unknown function (DUF1722) ND012_04865 PF03441 FAD binding domain of DNA photolyase ND012_04865 PF00875 DNA photolyase ND012_04870 PF02112 cAMP phosphodiesterases class-II ND012_04875 PF01784 NIF3 (NGG1p interacting factor 3) ND012_04880 PF02682 Carboxyltransferase domain, subdomain C and D ND012_04885 PF02626 Carboxyltransferase domain, subdomain A and B ND012_04890 PF03746 LamB/YcsF family ND012_04905 PF01470 Pyroglutamyl peptidase ND012_04915 PF00285 Citrate synthase, C-terminal domain ND012_04920 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND012_04925 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND012_04930 PF02910 Fumarate reductase flavoprotein C-term ND012_04930 PF00890 FAD binding domain ND012_04935 PF13085 2Fe-2S iron-sulfur cluster binding domain ND012_04940 PF00676 Dehydrogenase E1 component ND012_04940 PF16870 2-oxoglutarate dehydrogenase C-terminal ND012_04940 PF02779 Transketolase, pyrimidine binding domain ND012_04940 PF16078 2-oxoglutarate dehydrogenase N-terminus ND012_04945 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND012_04945 PF00364 Biotin-requiring enzyme ND012_04945 PF02817 e3 binding domain ND012_04950 PF08442 ATP-grasp domain ND012_04950 PF00549 CoA-ligase ND012_04955 PF02629 CoA binding domain ND012_04955 PF00549 CoA-ligase ND012_04965 PF01654 Cytochrome bd terminal oxidase subunit I ND012_04970 PF02322 Cytochrome bd terminal oxidase subunit II ND012_04975 PF08173 Membrane bound YbgT-like protein ND012_04980 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ND012_04985 PF03061 Thioesterase superfamily ND012_04990 PF01618 MotA/TolQ/ExbB proton channel family ND012_04995 PF02472 Biopolymer transport protein ExbD/TolR ND012_05000 PF06519 TolA C-terminal ND012_05000 PF06519 TolA C-terminal ND012_05005 PF04052 TolB amino-terminal domain ND012_05005 PF07676 WD40-like Beta Propeller Repeat ND012_05010 PF00691 OmpA family ND012_05015 PF13174 Tetratricopeptide repeat ND012_05015 PF16331 TolA binding protein trimerisation ND012_05045 PF02445 Quinolinate synthetase A protein ND012_05050 PF04973 Nicotinamide mononucleotide transporter ND012_05055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_05055 PF00512 His Kinase A (phospho-acceptor) domain ND012_05055 PF01627 Hpt domain ND012_05055 PF00072 Response regulator receiver domain ND012_05055 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_05055 PF00989 PAS fold ND012_05060 PF00196 Bacterial regulatory proteins, luxR family ND012_05060 PF00072 Response regulator receiver domain ND012_05065 PF00793 DAHP synthetase I family ND012_05070 PF00300 Histidine phosphatase superfamily (branch 1) ND012_05080 PF01263 Aldose 1-epimerase ND012_05085 PF10509 Galactokinase galactose-binding signature ND012_05085 PF08544 GHMP kinases C terminal ND012_05085 PF00288 GHMP kinases N terminal domain ND012_05090 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ND012_05090 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ND012_05095 PF16363 GDP-mannose 4,6 dehydratase ND012_05110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_05110 PF03459 TOBE domain ND012_05115 PF10766 Multidrug efflux pump-associated protein AcrZ ND012_05125 PF00528 Binding-protein-dependent transport system inner membrane component ND012_05130 PF03459 TOBE domain ND012_05130 PF00005 ABC transporter ND012_05140 PF10282 Lactonase, 7-bladed beta-propeller ND012_05145 PF00202 Aminotransferase class-III ND012_05150 PF04055 Radical SAM superfamily ND012_05150 PF06968 Biotin and Thiamin Synthesis associated domain ND012_05155 PF00155 Aminotransferase class I and II ND012_05160 PF08241 Methyltransferase domain ND012_05170 PF00005 ABC transporter ND012_05175 PF04851 Type III restriction enzyme, res subunit ND012_05175 PF02151 UvrB/uvrC motif ND012_05175 PF12344 Ultra-violet resistance protein B ND012_05175 PF17757 UvrB interaction domain ND012_05175 PF00271 Helicase conserved C-terminal domain ND012_05180 PF09905 DNA-binding protein VF530 ND012_05195 PF01032 FecCD transport family ND012_05200 PF00005 ABC transporter ND012_05205 PF01933 Uncharacterised protein family UPF0052 ND012_05210 PF04055 Radical SAM superfamily ND012_05210 PF06463 Molybdenum Cofactor Synthesis C ND012_05215 PF01967 MoaC family ND012_05220 PF02597 ThiS family ND012_05225 PF02391 MoaE protein ND012_05230 PF01027 Inhibitor of apoptosis-promoting Bax1 ND012_05245 PF00005 ABC transporter ND012_05250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND012_05255 PF09209 Tetracyclin repressor-like, C-terminal domain ND012_05255 PF00440 Bacterial regulatory proteins, tetR family ND012_05260 PF00270 DEAD/DEAH box helicase ND012_05260 PF00271 Helicase conserved C-terminal domain ND012_05265 PF01207 Dihydrouridine synthase (Dus) ND012_05275 PF00768 D-alanyl-D-alanine carboxypeptidase ND012_05280 PF09330 D-lactate dehydrogenase, membrane binding ND012_05280 PF01565 FAD binding domain ND012_05285 PF01928 CYTH domain ND012_05290 PF01844 HNH endonuclease ND012_05300 PF04226 Transglycosylase associated protein ND012_05305 PF00005 ABC transporter ND012_05315 PF00528 Binding-protein-dependent transport system inner membrane component ND012_05325 PF07308 Protein of unknown function (DUF1456) ND012_05330 PF00581 Rhodanese-like domain ND012_05335 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND012_05340 PF00528 Binding-protein-dependent transport system inner membrane component ND012_05345 PF00005 ABC transporter ND012_05350 PF00528 Binding-protein-dependent transport system inner membrane component ND012_05355 PF13520 Amino acid permease ND012_05360 PF01276 Orn/Lys/Arg decarboxylase, major domain ND012_05360 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND012_05360 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND012_05370 PF00892 EamA-like transporter family ND012_05375 PF00267 Gram-negative porin ND012_05380 PF13307 Helicase C-terminal domain ND012_05380 PF06733 DEAD_2 ND012_05385 PF02885 Glycosyl transferase family, helical bundle domain ND012_05390 PF05971 RNA methyltransferase ND012_05395 PF00005 ABC transporter ND012_05400 PF00528 Binding-protein-dependent transport system inner membrane component ND012_05405 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_05410 PF00210 Ferritin-like domain ND012_05415 PF13649 Methyltransferase domain ND012_05420 PF00892 EamA-like transporter family ND012_05425 PF13505 Outer membrane protein beta-barrel domain ND012_05430 PF00571 CBS domain ND012_05430 PF01769 Divalent cation transporter ND012_05430 PF03448 MgtE intracellular N domain ND012_05435 PF01545 Cation efflux family ND012_05435 PF16916 Dimerisation domain of Zinc Transporter ND012_05440 PF00005 ABC transporter ND012_05440 PF12848 ABC transporter ND012_05445 PF00899 ThiF family ND012_05450 PF03454 MoeA C-terminal region (domain IV) ND012_05450 PF03453 MoeA N-terminal region (domain I and II) ND012_05450 PF00994 Probable molybdopterin binding domain ND012_05460 PF00756 Putative esterase ND012_05465 PF08240 Alcohol dehydrogenase GroES-like domain ND012_05465 PF00107 Zinc-binding dehydrogenase ND012_05470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_05470 PF03466 LysR substrate binding domain ND012_05475 PF06779 Uncharacterised MFS-type transporter YbfB ND012_05480 PF01227 GTP cyclohydrolase I ND012_05485 PF04235 Protein of unknown function (DUF418) ND012_05490 PF00356 Bacterial regulatory proteins, lacI family ND012_05495 PF13407 Periplasmic binding protein domain ND012_05500 PF00005 ABC transporter ND012_05505 PF02653 Branched-chain amino acid transport system / permease component ND012_05510 PF02698 DUF218 domain ND012_05515 PF03949 Malic enzyme, NAD binding domain ND012_05515 PF00390 Malic enzyme, N-terminal domain ND012_05525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_05525 PF03466 LysR substrate binding domain ND012_05530 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ND012_05530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND012_05535 PF04172 LrgB-like family ND012_05540 PF03788 LrgA family ND012_05550 PF09334 tRNA synthetases class I (M) ND012_05550 PF01588 Putative tRNA binding domain ND012_05555 PF10609 NUBPL iron-transfer P-loop NTPase ND012_05560 PF00485 Phosphoribulokinase / Uridine kinase family ND012_05565 PF00692 dUTPase ND012_05570 PF05170 AsmA family ND012_05575 PF03606 C4-dicarboxylate anaerobic carrier ND012_05580 PF03741 Integral membrane protein TerC family ND012_05580 PF03471 Transporter associated domain ND012_05580 PF00571 CBS domain ND012_05585 PF00483 Nucleotidyl transferase ND012_05590 PF00483 Nucleotidyl transferase ND012_05595 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ND012_05595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ND012_05605 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ND012_05605 PF01502 Phosphoribosyl-AMP cyclohydrolase ND012_05610 PF00977 Histidine biosynthesis protein ND012_05615 PF00977 Histidine biosynthesis protein ND012_05620 PF00117 Glutamine amidotransferase class-I ND012_05625 PF00475 Imidazoleglycerol-phosphate dehydratase ND012_05630 PF00155 Aminotransferase class I and II ND012_05635 PF00815 Histidinol dehydrogenase ND012_05640 PF01634 ATP phosphoribosyltransferase ND012_05640 PF08029 HisG, C-terminal domain ND012_05650 PF01370 NAD dependent epimerase/dehydratase family ND012_05655 PF00043 Glutathione S-transferase, C-terminal domain ND012_05655 PF13417 Glutathione S-transferase, N-terminal domain ND012_05670 PF01053 Cys/Met metabolism PLP-dependent enzyme ND012_05675 PF00291 Pyridoxal-phosphate dependent enzyme ND012_05675 PF00571 CBS domain ND012_05680 PF00768 D-alanyl-D-alanine carboxypeptidase ND012_05680 PF07943 Penicillin-binding protein 5, C-terminal domain ND012_05685 PF03313 Serine dehydratase alpha chain ND012_05685 PF03315 Serine dehydratase beta chain ND012_05695 PF00455 DeoR C terminal sensor domain ND012_05695 PF08220 DeoR-like helix-turn-helix domain ND012_05700 PF01791 DeoC/LacD family aldolase ND012_05705 PF01569 PAP2 superfamily ND012_05715 PF06826 Predicted Permease Membrane Region ND012_05715 PF02080 TrkA-C domain ND012_05720 PF00462 Glutaredoxin ND012_05725 PF07214 Protein of unknown function (DUF1418) ND012_05730 PF10722 Putative bacterial sensory transduction regulator ND012_05735 PF13416 Bacterial extracellular solute-binding protein ND012_05740 PF08402 TOBE domain ND012_05740 PF00005 ABC transporter ND012_05745 PF00528 Binding-protein-dependent transport system inner membrane component ND012_05750 PF00528 Binding-protein-dependent transport system inner membrane component ND012_05755 PF10767 Protein of unknown function (DUF2593) ND012_05760 PF05958 tRNA (Uracil-5-)-methyltransferase ND012_05765 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_05770 PF00528 Binding-protein-dependent transport system inner membrane component ND012_05775 PF00528 Binding-protein-dependent transport system inner membrane component ND012_05780 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_05785 PF00005 ABC transporter ND012_05790 PF12883 Protein of unknown function (DUF3828) ND012_05795 PF01906 Putative heavy-metal-binding ND012_05800 PF01370 NAD dependent epimerase/dehydratase family ND012_05805 PF13460 NAD(P)H-binding ND012_05805 PF11066 Protein of unknown function (DUF2867) ND012_05810 PF01212 Beta-eliminating lyase ND012_05815 PF00111 2Fe-2S iron-sulfur cluster binding domain ND012_05815 PF00175 Oxidoreductase NAD-binding domain ND012_05815 PF00970 Oxidoreductase FAD-binding domain ND012_05820 PF03063 Prismane/CO dehydrogenase family ND012_05825 PF03956 Lysine exporter LysO ND012_05830 PF11398 Protein of unknown function (DUF2813) ND012_05835 PF04393 Protein of unknown function (DUF535) ND012_05840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND012_05845 PF12704 MacB-like periplasmic core domain ND012_05845 PF00005 ABC transporter ND012_05845 PF02687 FtsX-like permease family ND012_05850 PF00313 'Cold-shock' DNA-binding domain ND012_05855 PF02617 ATP-dependent Clp protease adaptor protein ClpS ND012_05860 PF07724 AAA domain (Cdc48 subfamily) ND012_05860 PF17871 AAA lid domain ND012_05860 PF02861 Clp amino terminal domain, pathogenicity island component ND012_05860 PF10431 C-terminal, D2-small domain, of ClpB protein ND012_05860 PF00004 ATPase family associated with various cellular activities (AAA) ND012_05865 PF01176 Translation initiation factor 1A / IF-1 ND012_05870 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ND012_05875 PF00664 ABC transporter transmembrane region ND012_05875 PF00005 ABC transporter ND012_05880 PF00664 ABC transporter transmembrane region ND012_05880 PF00005 ABC transporter ND012_05885 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_05890 PF01037 Lrp/AsnC ligand binding domain ND012_05895 PF01580 FtsK/SpoIIIE family ND012_05895 PF09397 Ftsk gamma domain ND012_05895 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND012_05895 PF17854 FtsK alpha domain ND012_05900 PF03548 Outer membrane lipoprotein carrier protein LolA ND012_05905 PF00004 ATPase family associated with various cellular activities (AAA) ND012_05905 PF16193 AAA C-terminal domain ND012_05905 PF12002 MgsA AAA+ ATPase C terminal ND012_05910 PF02403 Seryl-tRNA synthetase N-terminal domain ND012_05910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND012_05915 PF07690 Major Facilitator Superfamily ND012_05920 PF04055 Radical SAM superfamily ND012_05925 PF01228 Glycine radical ND012_05925 PF02901 Pyruvate formate lyase-like ND012_05930 PF01226 Formate/nitrite transporter ND012_05935 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ND012_05935 PF18381 YcaO cyclodehydratase C-terminal domain ND012_05940 PF00710 Asparaginase, N-terminal ND012_05940 PF17763 Glutaminase/Asparaginase C-terminal domain ND012_05945 PF00266 Aminotransferase class-V ND012_05950 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND012_05955 PF02224 Cytidylate kinase ND012_05960 PF00575 S1 RNA binding domain ND012_05965 PF00216 Bacterial DNA-binding protein ND012_05970 PF03772 Competence protein ND012_05970 PF00753 Metallo-beta-lactamase superfamily ND012_05975 PF00664 ABC transporter transmembrane region ND012_05975 PF00005 ABC transporter ND012_05980 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ND012_05985 PF07063 Domain of unknown function (DUF1338) ND012_05990 PF00313 'Cold-shock' DNA-binding domain ND012_05995 PF00313 'Cold-shock' DNA-binding domain ND012_06000 PF03966 Trm112p-like protein ND012_06005 PF02348 Cytidylyltransferase ND012_06010 PF01636 Phosphotransferase enzyme family ND012_06015 PF02698 DUF218 domain ND012_06020 PF13847 Methyltransferase domain ND012_06025 PF03882 MukF winged-helix domain ND012_06025 PF17193 MukF C-terminal domain ND012_06025 PF17192 MukF middle domain ND012_06030 PF04288 MukE-like family ND012_06035 PF04310 MukB N-terminal ND012_06035 PF16330 MukB hinge domain ND012_06040 PF01471 Putative peptidoglycan binding domain ND012_06040 PF03734 L,D-transpeptidase catalytic domain ND012_06045 PF05951 Bacterial protein of unknown function (DUF882) ND012_06050 PF00753 Metallo-beta-lactamase superfamily ND012_06055 PF00155 Aminotransferase class I and II ND012_06060 PF00267 Gram-negative porin ND012_06065 PF00152 tRNA synthetases class II (D, K and N) ND012_06065 PF01336 OB-fold nucleic acid binding domain ND012_06070 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ND012_06070 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ND012_06075 PF11940 Domain of unknown function (DUF3458) Ig-like fold ND012_06075 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ND012_06075 PF01433 Peptidase family M1 domain ND012_06080 PF01180 Dihydroorotate dehydrogenase ND012_06085 PF07126 Cell-division protein ZapC ND012_06090 PF00111 2Fe-2S iron-sulfur cluster binding domain ND012_06090 PF03473 MOSC domain ND012_06090 PF03476 MOSC N-terminal beta barrel domain ND012_06095 PF10672 S-adenosylmethionine-dependent methyltransferase ND012_06095 PF02926 THUMP domain ND012_06095 PF01170 Putative RNA methylase family UPF0020 ND012_06100 PF00005 ABC transporter ND012_06100 PF16326 ABC transporter C-terminal domain ND012_06100 PF12848 ABC transporter ND012_06105 PF04403 Paraquat-inducible protein A ND012_06110 PF02470 MlaD protein ND012_06115 PF03886 ABC-type transport auxiliary lipoprotein component ND012_06120 PF04957 Ribosome modulation factor ND012_06125 PF07977 FabA-like domain ND012_06130 PF13654 AAA domain ND012_06130 PF05362 Lon protease (S16) C-terminal proteolytic domain ND012_06135 PF17414 MatP C-terminal ribbon-helix-helix domain ND012_06135 PF06303 MatP N-terminal domain ND012_06140 PF00691 OmpA family ND012_06140 PF01389 OmpA-like transmembrane domain ND012_06145 PF03846 Cell division inhibitor SulA ND012_06150 PF04994 TfoX C-terminal domain ND012_06150 PF04993 TfoX N-terminal domain ND012_06155 PF12805 FUSC-like inner membrane protein yccS ND012_06160 PF03733 Inner membrane component domain ND012_06165 PF12462 DNA helicase IV / RNA helicase N terminal ND012_06165 PF00580 UvrD/REP helicase N-terminal domain ND012_06165 PF13361 UvrD-like helicase C-terminal domain ND012_06170 PF02142 MGS-like domain ND012_06175 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ND012_06180 PF13380 CoA binding domain ND012_06185 PF08755 Hemimethylated DNA-binding protein YccV like ND012_06190 PF17785 PUA-like domain ND012_06190 PF10672 S-adenosylmethionine-dependent methyltransferase ND012_06195 PF00708 Acylphosphatase ND012_06200 PF04358 DsrC like protein ND012_06210 PF00484 Carbonic anhydrase ND012_06215 PF03471 Transporter associated domain ND012_06215 PF00999 Sodium/hydrogen exchanger family ND012_06215 PF02080 TrkA-C domain ND012_06225 PF01757 Acyltransferase family ND012_06230 PF04349 Periplasmic glucan biosynthesis protein, MdoG ND012_06235 PF00535 Glycosyl transferase family 2 ND012_06245 PF00854 POT family ND012_06255 PF03279 Bacterial lipid A biosynthesis acyltransferase ND012_06260 PF12368 Rhodanase C-terminal ND012_06260 PF17773 UPF0176 acylphosphatase like domain ND012_06260 PF00581 Rhodanese-like domain ND012_06265 PF01594 AI-2E family transporter ND012_06270 PF00196 Bacterial regulatory proteins, luxR family ND012_06275 PF01266 FAD dependent oxidoreductase ND012_06280 PF13991 BssS protein family ND012_06285 PF06183 DinI-like family ND012_06290 PF01979 Amidohydrolase family ND012_06295 PF03992 Antibiotic biosynthesis monooxygenase ND012_06305 PF12111 Polyribonucleotide phosphorylase C terminal ND012_06305 PF10150 Ribonuclease E/G family ND012_06305 PF00575 S1 RNA binding domain ND012_06310 PF00849 RNA pseudouridylate synthase ND012_06310 PF01479 S4 domain ND012_06315 PF02545 Maf-like protein ND012_06320 PF02620 Large ribosomal RNA subunit accumulation protein YceD ND012_06325 PF01783 Ribosomal L32p protein family ND012_06330 PF02504 Fatty acid synthesis protein ND012_06335 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ND012_06335 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ND012_06340 PF00698 Acyl transferase domain ND012_06350 PF00550 Phosphopantetheine attachment site ND012_06355 PF00109 Beta-ketoacyl synthase, N-terminal domain ND012_06355 PF02801 Beta-ketoacyl synthase, C-terminal domain ND012_06360 PF01063 Amino-transferase class IV ND012_06365 PF02618 YceG-like family ND012_06370 PF02223 Thymidylate kinase ND012_06375 PF09115 DNA polymerase III, delta subunit, C terminal ND012_06380 PF01026 TatD related DNase ND012_06385 PF02378 Phosphotransferase system, EIIC ND012_06385 PF00367 phosphotransferase system, EIIB ND012_06390 PF01230 HIT domain ND012_06395 PF07233 Protein of unknown function (DUF1425) ND012_06400 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND012_06400 PF13036 Peptidoglycan-synthase activator LpoB ND012_06405 PF01636 Phosphotransferase enzyme family ND012_06410 PF00933 Glycosyl hydrolase family 3 N terminal domain ND012_06415 PF05728 Uncharacterised protein family (UPF0227) ND012_06420 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_06425 PF05433 Glycine zipper 2TM domain ND012_06430 PF17757 UvrB interaction domain ND012_06430 PF02559 CarD-like/TRCF domain ND012_06430 PF00271 Helicase conserved C-terminal domain ND012_06430 PF00270 DEAD/DEAH box helicase ND012_06430 PF03461 TRCF domain ND012_06435 PF12704 MacB-like periplasmic core domain ND012_06435 PF02687 FtsX-like permease family ND012_06440 PF00005 ABC transporter ND012_06445 PF02687 FtsX-like permease family ND012_06445 PF12704 MacB-like periplasmic core domain ND012_06450 PF00480 ROK family ND012_06455 PF02146 Sir2 family ND012_06460 PF07687 Peptidase dimerisation domain ND012_06460 PF01546 Peptidase family M20/M25/M40 ND012_06465 PF08007 Cupin superfamily protein ND012_06470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_06470 PF08918 PhoQ Sensor ND012_06475 PF00072 Response regulator receiver domain ND012_06475 PF00486 Transcriptional regulatory protein, C terminal ND012_06485 PF08328 Adenylosuccinate lyase C-terminal ND012_06485 PF00206 Lyase ND012_06490 PF04356 Protein of unknown function (DUF489) ND012_06500 PF00293 NUDIX domain ND012_06505 PF00849 RNA pseudouridylate synthase ND012_06510 PF00180 Isocitrate/isopropylmalate dehydrogenase ND012_06515 PF00196 Bacterial regulatory proteins, luxR family ND012_06515 PF03472 Autoinducer binding domain ND012_06520 PF00765 Autoinducer synthase ND012_06525 PF00232 Glycosyl hydrolase family 1 ND012_06535 PF01432 Peptidase family M3 ND012_06545 PF03390 2-hydroxycarboxylate transporter family ND012_06550 PF00072 Response regulator receiver domain ND012_06555 PF17203 Single cache domain 3 ND012_06555 PF00989 PAS fold ND012_06555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_06555 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND012_06560 PF00939 Sodium:sulfate symporter transmembrane region ND012_06565 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ND012_06565 PF00413 Matrixin ND012_06565 PF08548 Peptidase M10 serralysin C terminal ND012_06570 PF02974 Protease inhibitor Inh ND012_06575 PF00005 ABC transporter ND012_06575 PF00664 ABC transporter transmembrane region ND012_06580 PF00529 HlyD membrane-fusion protein of T1SS ND012_06585 PF02321 Outer membrane efflux protein ND012_06600 PF02311 AraC-like ligand binding domain ND012_06600 PF12833 Helix-turn-helix domain ND012_06605 PF02562 PhoH-like protein ND012_06610 PF01699 Sodium/calcium exchanger protein ND012_06615 PF04954 Siderophore-interacting protein ND012_06615 PF08021 Siderophore-interacting FAD-binding domain ND012_06620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_06620 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ND012_06620 PF00672 HAMP domain ND012_06620 PF07730 Histidine kinase ND012_06630 PF02322 Cytochrome bd terminal oxidase subunit II ND012_06635 PF01654 Cytochrome bd terminal oxidase subunit I ND012_06640 PF00155 Aminotransferase class I and II ND012_06640 PF00392 Bacterial regulatory proteins, gntR family ND012_06645 PF00202 Aminotransferase class-III ND012_06650 PF04958 Arginine N-succinyltransferase beta subunit ND012_06655 PF00171 Aldehyde dehydrogenase family ND012_06660 PF04996 Succinylarginine dihydrolase ND012_06665 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ND012_06670 PF00267 Gram-negative porin ND012_06680 PF01979 Amidohydrolase family ND012_06685 PF00392 Bacterial regulatory proteins, gntR family ND012_06685 PF07702 UTRA domain ND012_06690 PF01979 Amidohydrolase family ND012_06695 PF05962 HutD ND012_06700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_06700 PF03466 LysR substrate binding domain ND012_06710 PF03824 High-affinity nickel-transport protein ND012_06715 PF00708 Acylphosphatase ND012_06715 PF17788 HypF Kae1-like domain ND012_06715 PF01300 Telomere recombination ND012_06715 PF07503 HypF finger ND012_06720 PF01568 Molydopterin dinucleotide binding domain ND012_06720 PF00384 Molybdopterin oxidoreductase ND012_06720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND012_06725 PF12800 4Fe-4S binding domain ND012_06725 PF13247 4Fe-4S dicluster domain ND012_06730 PF01750 Hydrogenase maturation protease ND012_06735 PF07450 Formate hydrogenlyase maturation protein HycH ND012_06740 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND012_06745 PF12838 4Fe-4S dicluster domain ND012_06750 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND012_06750 PF00374 Nickel-dependent hydrogenase ND012_06750 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND012_06755 PF00146 NADH dehydrogenase ND012_06760 PF00361 Proton-conducting membrane transporter ND012_06765 PF13247 4Fe-4S dicluster domain ND012_06770 PF11046 Transcriptional repressor of hyc and hyp operons ND012_06775 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ND012_06780 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND012_06785 PF01455 HupF/HypC family ND012_06790 PF01924 Hydrogenase formation hypA family ND012_06795 PF02769 AIR synthase related protein, C-terminal domain ND012_06795 PF00586 AIR synthase related protein, N-terminal domain ND012_06800 PF02954 Bacterial regulatory protein, Fis family ND012_06800 PF00158 Sigma-54 interaction domain ND012_06800 PF01590 GAF domain ND012_06810 PF13954 PapC N-terminal domain ND012_06810 PF00577 Outer membrane usher protein ND012_06815 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_06815 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_06830 PF12833 Helix-turn-helix domain ND012_06835 PF01926 50S ribosome-binding GTPase ND012_06835 PF06071 Protein of unknown function (DUF933) ND012_06845 PF01195 Peptidyl-tRNA hydrolase ND012_06850 PF10762 Protein of unknown function (DUF2583) ND012_06855 PF14572 Phosphoribosyl synthetase-associated domain ND012_06855 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ND012_06860 PF00288 GHMP kinases N terminal domain ND012_06860 PF08544 GHMP kinases C terminal ND012_06865 PF03550 Outer membrane lipoprotein LolB ND012_06870 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ND012_06870 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ND012_06870 PF01488 Shikimate / quinate 5-dehydrogenase ND012_06875 PF03462 PCRF domain ND012_06875 PF00472 RF-1 domain ND012_06880 PF13847 Methyltransferase domain ND012_06880 PF17827 PrmC N-terminal domain ND012_06885 PF04247 Invasion gene expression up-regulator, SirB ND012_06890 PF13369 Transglutaminase-like superfamily ND012_06895 PF00793 DAHP synthetase I family ND012_06900 PF00916 Sulfate permease family ND012_06900 PF01740 STAS domain ND012_06905 PF00990 Diguanylate cyclase, GGDEF domain ND012_06915 PF03009 Glycerophosphoryl diester phosphodiesterase family ND012_06925 PF00854 POT family ND012_06930 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND012_06935 PF02811 PHP domain ND012_06940 PF02613 Nitrate reductase delta subunit ND012_06945 PF07273 Protein of unknown function (DUF1439) ND012_06955 PF07690 Major Facilitator Superfamily ND012_06960 PF13302 Acetyltransferase (GNAT) domain ND012_06965 PF04337 Protein of unknown function, DUF480 ND012_06970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND012_06975 PF03023 Lipid II flippase MurJ ND012_06980 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND012_06980 PF17287 POTRA domain ND012_06980 PF08479 POTRA domain, ShlB-type ND012_06985 PF05860 haemagglutination activity domain ND012_06985 PF13332 Hemagglutinin repeat ND012_06995 PF00750 tRNA synthetases class I (R) ND012_06995 PF03485 Arginyl tRNA synthetase N terminal domain ND012_06995 PF05746 DALR anticodon binding domain ND012_07000 PF06185 YecM protein ND012_07005 PF03932 CutC family ND012_07010 PF08003 Protein of unknown function (DUF1698) ND012_07015 PF13649 Methyltransferase domain ND012_07020 PF01124 MAPEG family ND012_07025 PF01904 Protein of unknown function DUF72 ND012_07035 PF02938 GAD domain ND012_07035 PF00152 tRNA synthetases class II (D, K and N) ND012_07035 PF01336 OB-fold nucleic acid binding domain ND012_07040 PF00293 NUDIX domain ND012_07045 PF01709 Transcriptional regulator ND012_07050 PF02075 Crossover junction endodeoxyribonuclease RuvC ND012_07055 PF07499 RuvA, C-terminal domain ND012_07055 PF01330 RuvA N terminal domain ND012_07060 PF17864 RuvB AAA lid domain ND012_07060 PF05491 RuvB C-terminal winged helix domain ND012_07060 PF05496 Holliday junction DNA helicase RuvB P-loop domain ND012_07065 PF00854 POT family ND012_07070 PF00950 ABC 3 transport family ND012_07075 PF00005 ABC transporter ND012_07080 PF01297 Zinc-uptake complex component A periplasmic ND012_07085 PF01551 Peptidase family M23 ND012_07085 PF01476 LysM domain ND012_07085 PF08525 Opacity-associated protein A N-terminal motif ND012_07090 PF03279 Bacterial lipid A biosynthesis acyltransferase ND012_07095 PF00224 Pyruvate kinase, barrel domain ND012_07095 PF02887 Pyruvate kinase, alpha/beta domain ND012_07100 PF01418 Helix-turn-helix domain, rpiR family ND012_07100 PF01380 SIS domain ND012_07105 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ND012_07105 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ND012_07110 PF01081 KDPG and KHG aldolase ND012_07115 PF00893 Small Multidrug Resistance protein ND012_07120 PF00893 Small Multidrug Resistance protein ND012_07125 PF01042 Endoribonuclease L-PSP ND012_07130 PF13307 Helicase C-terminal domain ND012_07130 PF04851 Type III restriction enzyme, res subunit ND012_07135 PF00814 Glycoprotease family ND012_07140 PF03843 Outer membrane lipoprotein Slp family ND012_07145 PF00501 AMP-binding enzyme ND012_07145 PF13193 AMP-binding enzyme C-terminal domain ND012_07150 PF01612 3'-5' exonuclease ND012_07150 PF00570 HRDC domain ND012_07155 PF03776 Septum formation topological specificity factor MinE ND012_07160 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ND012_07165 PF03775 Septum formation inhibitor MinC, C-terminal domain ND012_07165 PF05209 Septum formation inhibitor MinC, N-terminal domain ND012_07170 PF05166 YcgL domain ND012_07175 PF01557 Fumarylacetoacetate (FAA) hydrolase family ND012_07180 PF03692 Putative zinc- or iron-chelating domain ND012_07195 PF02600 Disulfide bond formation protein DsbB ND012_07200 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ND012_07205 PF00392 Bacterial regulatory proteins, gntR family ND012_07205 PF07840 FadR C-terminal domain ND012_07210 PF04293 SpoVR like protein ND012_07215 PF01266 FAD dependent oxidoreductase ND012_07220 PF01168 Alanine racemase, N-terminal domain ND012_07220 PF00842 Alanine racemase, C-terminal domain ND012_07225 PF07690 Major Facilitator Superfamily ND012_07235 PF00563 EAL domain ND012_07235 PF00990 Diguanylate cyclase, GGDEF domain ND012_07235 PF13426 PAS domain ND012_07240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_07240 PF03466 LysR substrate binding domain ND012_07245 PF03306 Alpha-acetolactate decarboxylase ND012_07250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND012_07250 PF00205 Thiamine pyrophosphate enzyme, central domain ND012_07250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND012_07255 PF04285 Protein of unknown function (DUF444) ND012_07260 PF06798 PrkA serine protein kinase C-terminal domain ND012_07260 PF08298 PrkA AAA domain ND012_07270 PF06629 MltA-interacting protein MipA ND012_07275 PF00884 Sulfatase ND012_07280 PF01263 Aldose 1-epimerase ND012_07285 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND012_07285 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND012_07290 PF01641 SelR domain ND012_07295 PF07023 Protein of unknown function (DUF1315) ND012_07300 PF00857 Isochorismatase family ND012_07305 PF00710 Asparaginase, N-terminal ND012_07305 PF17763 Glutaminase/Asparaginase C-terminal domain ND012_07310 PF01343 Peptidase family S49 ND012_07315 PF00881 Nitroreductase family ND012_07320 PF02769 AIR synthase related protein, C-terminal domain ND012_07320 PF00586 AIR synthase related protein, N-terminal domain ND012_07325 PF01751 Toprim domain ND012_07325 PF01131 DNA topoisomerase ND012_07330 PF07383 Protein of unknown function (DUF1496) ND012_07335 PF00293 NUDIX domain ND012_07340 PF03372 Endonuclease/Exonuclease/phosphatase family ND012_07350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_07350 PF03466 LysR substrate binding domain ND012_07370 PF01842 ACT domain ND012_07370 PF00551 Formyl transferase ND012_07375 PF02810 SEC-C motif ND012_07380 PF01734 Patatin-like phospholipase ND012_07385 PF00072 Response regulator receiver domain ND012_07390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND012_07390 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND012_07390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND012_07395 PF00816 H-NS histone family ND012_07400 PF00265 Thymidine kinase ND012_07405 PF00171 Aldehyde dehydrogenase family ND012_07405 PF00465 Iron-containing alcohol dehydrogenase ND012_07415 PF01914 MarC family integral membrane protein ND012_07420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_07425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_07430 PF00528 Binding-protein-dependent transport system inner membrane component ND012_07435 PF12911 N-terminal TM domain of oligopeptide transport permease C ND012_07435 PF00528 Binding-protein-dependent transport system inner membrane component ND012_07440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_07440 PF00005 ABC transporter ND012_07445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_07445 PF00005 ABC transporter ND012_07450 PF04269 Protein of unknown function, DUF440 ND012_07455 PF13091 PLD-like domain ND012_07455 PF13396 Phospholipase_D-nuclease N-terminal ND012_07475 PF03795 YCII-related domain ND012_07490 PF00486 Transcriptional regulatory protein, C terminal ND012_07500 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_07500 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_07505 PF13953 PapC C-terminal domain ND012_07505 PF00577 Outer membrane usher protein ND012_07505 PF13954 PapC N-terminal domain ND012_07525 PF03544 Gram-negative bacterial TonB protein C-terminal ND012_07530 PF03061 Thioesterase superfamily ND012_07535 PF04279 Intracellular septation protein A ND012_07540 PF01740 STAS domain ND012_07540 PF00916 Sulfate permease family ND012_07550 PF03692 Putative zinc- or iron-chelating domain ND012_07555 PF03922 OmpW family ND012_07565 PF00290 Tryptophan synthase alpha chain ND012_07570 PF00291 Pyridoxal-phosphate dependent enzyme ND012_07575 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ND012_07575 PF00218 Indole-3-glycerol phosphate synthase ND012_07580 PF02885 Glycosyl transferase family, helical bundle domain ND012_07580 PF00591 Glycosyl transferase family, a/b domain ND012_07585 PF00117 Glutamine amidotransferase class-I ND012_07590 PF04715 Anthranilate synthase component I, N terminal region ND012_07590 PF00425 chorismate binding enzyme ND012_07595 PF02811 PHP domain ND012_07600 PF01300 Telomere recombination ND012_07605 PF01479 S4 domain ND012_07605 PF00849 RNA pseudouridylate synthase ND012_07610 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ND012_07615 PF00106 short chain dehydrogenase ND012_07620 PF01343 Peptidase family S49 ND012_07620 PF08496 Peptidase family S49 N-terminal ND012_07625 PF10692 Protein of unknown function (DUF2498) ND012_07630 PF08272 Topoisomerase I zinc-ribbon-like ND012_07630 PF01751 Toprim domain ND012_07630 PF01396 Topoisomerase DNA binding C4 zinc finger ND012_07630 PF01131 DNA topoisomerase ND012_07635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_07635 PF03466 LysR substrate binding domain ND012_07655 PF00330 Aconitase family (aconitate hydratase) ND012_07655 PF00694 Aconitase C-terminal domain ND012_07660 PF00925 GTP cyclohydrolase II ND012_07665 PF01569 PAP2 superfamily ND012_07670 PF06305 Lipopolysaccharide assembly protein A domain ND012_07675 PF18073 Rubredoxin metal binding domain ND012_07685 PF07338 Protein of unknown function (DUF1471) ND012_07690 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND012_07695 PF01253 Translation initiation factor SUI1 ND012_07700 PF05433 Glycine zipper 2TM domain ND012_07705 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND012_07710 PF00563 EAL domain ND012_07710 PF05231 MASE1 ND012_07710 PF08447 PAS fold ND012_07710 PF00990 Diguanylate cyclase, GGDEF domain ND012_07710 PF13426 PAS domain ND012_07710 PF08448 PAS fold ND012_07715 PF08206 Ribonuclease B OB domain ND012_07715 PF00773 RNB domain ND012_07715 PF00575 S1 RNA binding domain ND012_07720 PF10576 Iron-sulfur binding domain of endonuclease III ND012_07720 PF00633 Helix-hairpin-helix motif ND012_07720 PF00730 HhH-GPD superfamily base excision DNA repair protein ND012_07725 PF02508 Rnf-Nqr subunit, membrane protein ND012_07730 PF04205 FMN-binding domain ND012_07735 PF03116 NQR2, RnfD, RnfE family ND012_07740 PF12833 Helix-turn-helix domain ND012_07740 PF06445 GyrI-like small molecule binding domain ND012_07745 PF13375 RnfC Barrel sandwich hybrid domain ND012_07745 PF10531 SLBB domain ND012_07745 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND012_07745 PF13237 4Fe-4S dicluster domain ND012_07750 PF04060 Putative Fe-S cluster ND012_07755 PF02508 Rnf-Nqr subunit, membrane protein ND012_07760 PF10754 Protein of unknown function (DUF2569) ND012_07765 PF01268 Formate--tetrahydrofolate ligase ND012_07770 PF03848 Tellurite resistance protein TehB ND012_07770 PF09313 Domain of unknown function (DUF1971) ND012_07775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND012_07775 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ND012_07780 PF13593 SBF-like CPA transporter family (DUF4137) ND012_07785 PF00962 Adenosine/AMP deaminase ND012_07790 PF06097 Bacterial protein of unknown function (DUF945) ND012_07795 PF01238 Phosphomannose isomerase type I ND012_07800 PF10415 Fumarase C C-terminus ND012_07800 PF00206 Lyase ND012_07805 PF05472 DNA replication terminus site-binding protein (Ter protein) ND012_07810 PF00480 ROK family ND012_07820 PF00654 Voltage gated chloride channel ND012_07825 PF06649 Protein of unknown function (DUF1161) ND012_07830 PF06932 Protein of unknown function (DUF1283) ND012_07835 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ND012_07840 PF00106 short chain dehydrogenase ND012_07845 PF01510 N-acetylmuramoyl-L-alanine amidase ND012_07865 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ND012_07865 PF01048 Phosphorylase superfamily ND012_07905 PF13419 Haloacid dehalogenase-like hydrolase ND012_07915 PF06445 GyrI-like small molecule binding domain ND012_07920 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND012_07920 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ND012_07925 PF00027 Cyclic nucleotide-binding domain ND012_07925 PF13545 Crp-like helix-turn-helix domain ND012_07930 PF00582 Universal stress protein family ND012_07940 PF08220 DeoR-like helix-turn-helix domain ND012_07940 PF00455 DeoR C terminal sensor domain ND012_07945 PF03611 PTS system sugar-specific permease component ND012_07950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND012_07955 PF00596 Class II Aldolase and Adducin N-terminal domain ND012_07960 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND012_07965 PF01261 Xylose isomerase-like TIM barrel ND012_07970 PF02233 NAD(P) transhydrogenase beta subunit ND012_07975 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ND012_07975 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ND012_07975 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ND012_07980 PF07338 Protein of unknown function (DUF1471) ND012_07985 PF13520 Amino acid permease ND012_07995 PF00072 Response regulator receiver domain ND012_07995 PF00486 Transcriptional regulatory protein, C terminal ND012_08000 PF00672 HAMP domain ND012_08000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_08000 PF00512 His Kinase A (phospho-acceptor) domain ND012_08005 PF00080 Copper/zinc superoxide dismutase (SODC) ND012_08015 PF12833 Helix-turn-helix domain ND012_08020 PF01161 Phosphatidylethanolamine-binding protein ND012_08025 PF06392 Acid shock protein repeat ND012_08030 PF00089 Trypsin ND012_08035 PF11898 Domain of unknown function (DUF3418) ND012_08035 PF04408 Helicase associated domain (HA2) ND012_08035 PF00271 Helicase conserved C-terminal domain ND012_08035 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ND012_08035 PF00270 DEAD/DEAH box helicase ND012_08040 PF02525 Flavodoxin-like fold ND012_08045 PF07027 Protein of unknown function (DUF1318) ND012_08050 PF13617 YnbE-like lipoprotein ND012_08060 PF11739 Dicarboxylate transport ND012_08065 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND012_08065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND012_08070 PF03724 META domain ND012_08075 PF03891 Domain of unknown function (DUF333) ND012_08085 PF00893 Small Multidrug Resistance protein ND012_08090 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ND012_08090 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ND012_08090 PF10371 Domain of unknown function ND012_08090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND012_08090 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ND012_08095 PF01171 PP-loop family ND012_08100 PF01544 CorA-like Mg2+ transporter protein ND012_08105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_08110 PF00246 Zinc carboxypeptidase ND012_08115 PF13378 Enolase C-terminal domain-like ND012_08115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ND012_08120 PF08534 Redoxin ND012_08125 PF18024 Helix-turn-helix domain ND012_08125 PF00158 Sigma-54 interaction domain ND012_08130 PF09722 Protein of unknown function (DUF2384) ND012_08135 PF08808 RES domain ND012_08140 PF05128 Domain of unknown function (DUF697) ND012_08145 PF04317 YcjX-like family, DUF463 ND012_08150 PF09584 Phage shock protein PspD (Phageshock_PspD) ND012_08155 PF04024 PspC domain ND012_08160 PF06667 Phage shock protein B ND012_08165 PF04012 PspA/IM30 family ND012_08170 PF00158 Sigma-54 interaction domain ND012_08170 PF02954 Bacterial regulatory protein, Fis family ND012_08180 PF02917 Pertussis toxin, subunit 1 ND012_08185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_08190 PF00528 Binding-protein-dependent transport system inner membrane component ND012_08195 PF00528 Binding-protein-dependent transport system inner membrane component ND012_08195 PF12911 N-terminal TM domain of oligopeptide transport permease C ND012_08200 PF00005 ABC transporter ND012_08200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_08205 PF00005 ABC transporter ND012_08215 PF00854 POT family ND012_08225 PF00226 DnaJ domain ND012_08225 PF01556 DnaJ C terminal domain ND012_08235 PF04893 Yip1 domain ND012_08245 PF11656 YjbD family (DUF3811) ND012_08250 PF02798 Glutathione S-transferase, N-terminal domain ND012_08250 PF00043 Glutathione S-transferase, C-terminal domain ND012_08255 PF08543 Phosphomethylpyrimidine kinase ND012_08260 PF01479 S4 domain ND012_08260 PF00579 tRNA synthetases class I (W and Y) ND012_08265 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ND012_08265 PF01243 Pyridoxamine 5'-phosphate oxidase ND012_08270 PF03702 Anhydro-N-acetylmuramic acid kinase ND012_08275 PF05433 Glycine zipper 2TM domain ND012_08280 PF01047 MarR family ND012_08290 PF00248 Aldo/keto reductase family ND012_08295 PF06945 Protein of unknown function (DUF1289) ND012_08300 PF00884 Sulfatase ND012_08300 PF08019 Phosphoethanolamine transferase EptA/EptB ND012_08305 PF16925 Tetracyclin repressor-like, C-terminal domain ND012_08305 PF00440 Bacterial regulatory proteins, tetR family ND012_08310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND012_08315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND012_08320 PF00929 Exonuclease ND012_08325 PF00462 Glutaredoxin ND012_08330 PF00877 NlpC/P60 family ND012_08335 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND012_08335 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND012_08345 PF00356 Bacterial regulatory proteins, lacI family ND012_08350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_08350 PF03466 LysR substrate binding domain ND012_08355 PF07690 Major Facilitator Superfamily ND012_08365 PF00677 Lumazine binding domain ND012_08370 PF01554 MatE ND012_08390 PF00224 Pyruvate kinase, barrel domain ND012_08390 PF02887 Pyruvate kinase, alpha/beta domain ND012_08395 PF04728 Lipoprotein leucine-zipper ND012_08400 PF03734 L,D-transpeptidase catalytic domain ND012_08400 PF01476 LysM domain ND012_08400 PF17969 L,D-transpeptidase C-terminal domain ND012_08405 PF02657 Fe-S metabolism associated domain ND012_08410 PF00266 Aminotransferase class-V ND012_08415 PF01458 Uncharacterized protein family (UPF0051) ND012_08420 PF00005 ABC transporter ND012_08425 PF01458 Uncharacterized protein family (UPF0051) ND012_08430 PF01521 Iron-sulphur cluster biosynthesis ND012_08435 PF03061 Thioesterase superfamily ND012_08440 PF13183 4Fe-4S dicluster domain ND012_08440 PF01565 FAD binding domain ND012_08440 PF02913 FAD linked oxidases, C-terminal domain ND012_08445 PF01594 AI-2E family transporter ND012_08455 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ND012_08455 PF02896 PEP-utilising enzyme, TIM barrel domain ND012_08455 PF00391 PEP-utilising enzyme, mobile domain ND012_08460 PF03618 Kinase/pyrophosphorylase ND012_08465 PF00793 DAHP synthetase I family ND012_08470 PF10636 Hemin uptake protein hemP ND012_08475 PF00593 TonB dependent receptor ND012_08475 PF07715 TonB-dependent Receptor Plug Domain ND012_08480 PF05171 Haemin-degrading HemS.ChuX domain ND012_08485 PF01497 Periplasmic binding protein ND012_08490 PF01032 FecCD transport family ND012_08495 PF00005 ABC transporter ND012_08500 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ND012_08505 PF10437 Bacterial lipoate protein ligase C-terminus ND012_08505 PF03099 Biotin/lipoate A/B protein ligase family ND012_08510 PF00877 NlpC/P60 family ND012_08520 PF00892 EamA-like transporter family ND012_08525 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ND012_08530 PF01522 Polysaccharide deacetylase ND012_08535 PF00551 Formyl transferase ND012_08535 PF01370 NAD dependent epimerase/dehydratase family ND012_08535 PF02911 Formyl transferase, C-terminal domain ND012_08540 PF00535 Glycosyl transferase family 2 ND012_08545 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND012_08550 PF00005 ABC transporter ND012_08555 PF01032 FecCD transport family ND012_08560 PF02899 Phage integrase, N-terminal SAM-like domain ND012_08560 PF00589 Phage integrase family ND012_08590 PF04606 Ogr/Delta-like zinc finger ND012_08600 PF00216 Bacterial DNA-binding protein ND012_08605 PF03147 Ferredoxin-fold anticodon binding domain ND012_08605 PF03483 B3/4 domain ND012_08605 PF03484 tRNA synthetase B5 domain ND012_08605 PF01588 Putative tRNA binding domain ND012_08605 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ND012_08610 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ND012_08610 PF01409 tRNA synthetases class II core domain (F) ND012_08615 PF00453 Ribosomal protein L20 ND012_08620 PF01632 Ribosomal protein L35 ND012_08625 PF00707 Translation initiation factor IF-3, C-terminal domain ND012_08625 PF05198 Translation initiation factor IF-3, N-terminal domain ND012_08630 PF03129 Anticodon binding domain ND012_08630 PF02824 TGS domain ND012_08630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND012_08630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND012_08660 PF01914 MarC family integral membrane protein ND012_08665 PF01464 Transglycosylase SLT domain ND012_08670 PF01297 Zinc-uptake complex component A periplasmic ND012_08675 PF00005 ABC transporter ND012_08680 PF00950 ABC 3 transport family ND012_08685 PF00950 ABC 3 transport family ND012_08690 PF03881 Fructosamine kinase ND012_08695 PF14002 YniB-like protein ND012_08700 PF13419 Haloacid dehalogenase-like hydrolase ND012_08705 PF04307 LexA-binding, inner membrane-associated putative hydrolase ND012_08710 PF00375 Sodium:dicarboxylate symporter family ND012_08715 PF01510 N-acetylmuramoyl-L-alanine amidase ND012_08720 PF01614 Bacterial transcriptional regulator ND012_08720 PF09339 IclR helix-turn-helix domain ND012_08725 PF07690 Major Facilitator Superfamily ND012_08735 PF01435 Peptidase family M48 ND012_08740 PF11818 C-terminal domain of tail specific protease (DUF3340) ND012_08740 PF00595 PDZ domain ND012_08740 PF03572 Peptidase family S41 ND012_08740 PF17804 Tail specific protease N-terminal domain ND012_08745 PF04352 ProQ/FINO family ND012_08745 PF17516 ProQ C-terminal domain ND012_08750 PF13185 GAF domain ND012_08755 PF04403 Paraquat-inducible protein A ND012_08760 PF02470 MlaD protein ND012_08765 PF00360 Phytochrome region ND012_08765 PF01590 GAF domain ND012_08765 PF00990 Diguanylate cyclase, GGDEF domain ND012_08765 PF00563 EAL domain ND012_08770 PF07351 Protein of unknown function (DUF1480) ND012_08795 PF05643 Putative bacterial lipoprotein (DUF799) ND012_08805 PF03783 Curli production assembly/transport component CsgG ND012_08810 PF10753 Toxin GhoT_OrtT ND012_08830 PF00144 Beta-lactamase ND012_08840 PF10709 Protein of unknown function (DUF2511) ND012_08845 PF05425 Copper resistance protein D ND012_08850 PF04234 CopC domain ND012_08855 PF00210 Ferritin-like domain ND012_08860 PF06440 DNA polymerase III, theta subunit ND012_08865 PF00561 alpha/beta hydrolase fold ND012_08870 PF00929 Exonuclease ND012_08875 PF00326 Prolyl oligopeptidase family ND012_08875 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ND012_08880 PF13995 YebF-like protein ND012_08885 PF04266 ASCH domain ND012_08890 PF07130 YebG protein ND012_08895 PF03880 DbpA RNA binding domain ND012_08895 PF00270 DEAD/DEAH box helicase ND012_08895 PF00271 Helicase conserved C-terminal domain ND012_08900 PF02222 ATP-grasp domain ND012_08905 PF03701 Uncharacterised protein family (UPF0181) ND012_08910 PF04715 Anthranilate synthase component I, N terminal region ND012_08910 PF00425 chorismate binding enzyme ND012_08915 PF00293 NUDIX domain ND012_08920 PF03315 Serine dehydratase beta chain ND012_08920 PF03313 Serine dehydratase alpha chain ND012_08925 PF03471 Transporter associated domain ND012_08925 PF03741 Integral membrane protein TerC family ND012_08930 PF03610 PTS system fructose IIA component ND012_08930 PF03830 PTS system sorbose subfamily IIB component ND012_08935 PF03609 PTS system sorbose-specific iic component ND012_08940 PF03613 PTS system mannose/fructose/sorbose family IID component ND012_08945 PF06173 Protein of unknown function (DUF986) ND012_08950 PF02659 Putative manganese efflux pump ND012_08955 PF02441 Flavoprotein ND012_08970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND012_08970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND012_08970 PF02770 Acyl-CoA dehydrogenase, middle domain ND012_08980 PF05199 GMC oxidoreductase ND012_08980 PF00732 GMC oxidoreductase ND012_08985 PF00501 AMP-binding enzyme ND012_08985 PF13193 AMP-binding enzyme C-terminal domain ND012_08985 PF00668 Condensation domain ND012_08985 PF00550 Phosphopantetheine attachment site ND012_08990 PF07690 Major Facilitator Superfamily ND012_09010 PF13847 Methyltransferase domain ND012_09015 PF00905 Penicillin binding protein transpeptidase domain ND012_09015 PF03717 Penicillin-binding Protein dimerisation domain ND012_09020 PF02578 Multi-copper polyphenol oxidoreductase laccase ND012_09025 PF00313 'Cold-shock' DNA-binding domain ND012_09030 PF10736 Protein of unknown function (DUF2627) ND012_09035 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ND012_09040 PF00324 Amino acid permease ND012_09055 PF13974 YebO-like protein ND012_09060 PF13998 MgrB protein ND012_09065 PF13996 YobH-like protein ND012_09070 PF10964 Protein of unknown function (DUF2766) ND012_09075 PF12833 Helix-turn-helix domain ND012_09090 PF13520 Amino acid permease ND012_09095 PF00664 ABC transporter transmembrane region ND012_09095 PF00005 ABC transporter ND012_09105 PF00360 Phytochrome region ND012_09105 PF00990 Diguanylate cyclase, GGDEF domain ND012_09105 PF00563 EAL domain ND012_09105 PF01590 GAF domain ND012_09110 PF03372 Endonuclease/Exonuclease/phosphatase family ND012_09120 PF06411 HdeA/HdeB family ND012_09125 PF07478 D-ala D-ala ligase C-terminus ND012_09125 PF01820 D-ala D-ala ligase N-terminus ND012_09140 PF08241 Methyltransferase domain ND012_09145 PF00313 'Cold-shock' DNA-binding domain ND012_09150 PF00313 'Cold-shock' DNA-binding domain ND012_09160 PF04794 YdjC-like protein ND012_09165 PF12833 Helix-turn-helix domain ND012_09165 PF07883 Cupin domain ND012_09170 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ND012_09175 PF00232 Glycosyl hydrolase family 1 ND012_09180 PF02378 Phosphotransferase system, EIIC ND012_09185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND012_09190 PF00849 RNA pseudouridylate synthase ND012_09190 PF01479 S4 domain ND012_09200 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ND012_09205 PF03553 Na+/H+ antiporter family ND012_09215 PF13520 Amino acid permease ND012_09230 PF00849 RNA pseudouridylate synthase ND012_09235 PF00282 Pyridoxal-dependent decarboxylase conserved domain ND012_09240 PF13520 Amino acid permease ND012_09245 PF04960 Glutaminase ND012_09275 PF13673 Acetyltransferase (GNAT) domain ND012_09285 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ND012_09285 PF00034 Cytochrome c ND012_09295 PF00528 Binding-protein-dependent transport system inner membrane component ND012_09300 PF00005 ABC transporter ND012_09310 PF01348 Type II intron maturase ND012_09310 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ND012_09325 PF02796 Helix-turn-helix domain of resolvase ND012_09325 PF00239 Resolvase, N terminal domain ND012_09330 PF00672 HAMP domain ND012_09330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_09330 PF00512 His Kinase A (phospho-acceptor) domain ND012_09330 PF00072 Response regulator receiver domain ND012_09330 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND012_09330 PF01627 Hpt domain ND012_09340 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ND012_09340 PF01348 Type II intron maturase ND012_09355 PF13610 DDE domain ND012_09385 PF00574 Clp protease ND012_09420 PF01548 Transposase ND012_09420 PF02371 Transposase IS116/IS110/IS902 family ND012_09425 PF01348 Type II intron maturase ND012_09425 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ND012_09430 PF02203 Tar ligand binding domain homologue ND012_09430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_09430 PF00672 HAMP domain ND012_09435 PF13276 HTH-like domain ND012_09435 PF13333 Integrase core domain ND012_09435 PF00665 Integrase core domain ND012_09485 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND012_09490 PF05840 Bacteriophage replication gene A protein (GPA) ND012_09495 PF05840 Bacteriophage replication gene A protein (GPA) ND012_09555 PF01066 CDP-alcohol phosphatidyltransferase ND012_09560 PF01541 GIY-YIG catalytic domain ND012_09560 PF02151 UvrB/uvrC motif ND012_09560 PF08459 UvrC Helix-hairpin-helix N-terminal ND012_09565 PF00196 Bacterial regulatory proteins, luxR family ND012_09565 PF00072 Response regulator receiver domain ND012_09570 PF10769 Protein of unknown function (DUF2594) ND012_09590 PF00324 Amino acid permease ND012_09595 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND012_09595 PF01276 Orn/Lys/Arg decarboxylase, major domain ND012_09595 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND012_09600 PF13520 Amino acid permease ND012_09605 PF00486 Transcriptional regulatory protein, C terminal ND012_09605 PF18500 CadC C-terminal domain 1 ND012_09610 PF00474 Sodium:solute symporter family ND012_09615 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ND012_09615 PF14850 DNA-binding domain of Proline dehydrogenase ND012_09615 PF01619 Proline dehydrogenase ND012_09615 PF00171 Aldehyde dehydrogenase family ND012_09620 PF00005 ABC transporter ND012_09625 PF00528 Binding-protein-dependent transport system inner membrane component ND012_09630 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_09635 PF00291 Pyridoxal-phosphate dependent enzyme ND012_09640 PF02899 Phage integrase, N-terminal SAM-like domain ND012_09645 PF04545 Sigma-70, region 4 ND012_09645 PF04542 Sigma-70 region 2 ND012_09645 PF04539 Sigma-70 region 3 ND012_09650 PF00669 Bacterial flagellin N-terminal helical region ND012_09650 PF08884 Flagellin D3 domain ND012_09650 PF00700 Bacterial flagellin C-terminal helical region ND012_09655 PF00700 Bacterial flagellin C-terminal helical region ND012_09655 PF08884 Flagellin D3 domain ND012_09655 PF00669 Bacterial flagellin N-terminal helical region ND012_09660 PF00700 Bacterial flagellin C-terminal helical region ND012_09660 PF08884 Flagellin D3 domain ND012_09660 PF00669 Bacterial flagellin N-terminal helical region ND012_09665 PF02465 Flagellar hook-associated protein 2 N-terminus ND012_09665 PF07196 Flagellin hook IN motif ND012_09665 PF07195 Flagellar hook-associated protein 2 C-terminus ND012_09670 PF02561 Flagellar protein FliS ND012_09675 PF05400 Flagellar protein FliT ND012_09680 PF12833 Helix-turn-helix domain ND012_09685 PF01966 HD domain ND012_09690 PF02254 TrkA-N domain ND012_09690 PF07885 Ion channel ND012_09695 PF01223 DNA/RNA non-specific endonuclease ND012_09705 PF02049 Flagellar hook-basal body complex protein FliE ND012_09710 PF08345 Flagellar M-ring protein C-terminal ND012_09710 PF01514 Secretory protein of YscJ/FliF family ND012_09715 PF01706 FliG C-terminal domain ND012_09715 PF14841 FliG middle domain ND012_09715 PF14842 FliG N-terminal domain ND012_09720 PF02108 Flagellar assembly protein FliH ND012_09725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND012_09725 PF18269 T3SS EscN ATPase C-terminal domain ND012_09730 PF02050 Flagellar FliJ protein ND012_09735 PF02120 Flagellar hook-length control protein FliK ND012_09740 PF03748 Flagellar basal body-associated protein FliL ND012_09745 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND012_09745 PF02154 Flagellar motor switch protein FliM ND012_09750 PF16973 Flagellar motor switch protein FliN N-terminal ND012_09750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND012_09755 PF04347 Flagellar biosynthesis protein, FliO ND012_09760 PF00813 FliP family ND012_09765 PF01313 Bacterial export proteins, family 3 ND012_09770 PF01311 Bacterial export proteins, family 1 ND012_09775 PF00669 Bacterial flagellin N-terminal helical region ND012_09780 PF00460 Flagella basal body rod protein ND012_09780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND012_09785 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ND012_09785 PF10135 Rod binding protein ND012_09790 PF02119 Flagellar P-ring protein ND012_09795 PF02107 Flagellar L-ring protein ND012_09800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND012_09800 PF00460 Flagella basal body rod protein ND012_09805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND012_09805 PF00460 Flagella basal body rod protein ND012_09810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND012_09810 PF07559 Flagellar basal body protein FlaE ND012_09810 PF00460 Flagella basal body rod protein ND012_09815 PF03963 Flagellar hook capping protein - N-terminal region ND012_09815 PF13861 FlgD Tudor-like domain ND012_09815 PF13860 FlgD Ig-like domain ND012_09820 PF00460 Flagella basal body rod protein ND012_09820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND012_09825 PF00460 Flagella basal body rod protein ND012_09830 PF13144 Chaperone for flagella basal body P-ring formation ND012_09830 PF17656 FlgA N-terminal domain ND012_09835 PF04316 Anti-sigma-28 factor, FlgM ND012_09840 PF05130 FlgN protein ND012_09845 PF06366 Flagellar protein FlhE ND012_09850 PF00771 FHIPEP family ND012_09855 PF01312 FlhB HrpN YscU SpaS Family ND012_09860 PF01483 Proprotein convertase P-domain ND012_09860 PF00082 Subtilase family ND012_09865 PF04344 Chemotaxis phosphatase, CheZ ND012_09870 PF00072 Response regulator receiver domain ND012_09875 PF01339 CheB methylesterase ND012_09875 PF00072 Response regulator receiver domain ND012_09880 PF01739 CheR methyltransferase, SAM binding domain ND012_09880 PF03705 CheR methyltransferase, all-alpha domain ND012_09885 PF02203 Tar ligand binding domain homologue ND012_09885 PF00672 HAMP domain ND012_09885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_09890 PF00672 HAMP domain ND012_09890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_09890 PF02203 Tar ligand binding domain homologue ND012_09895 PF01584 CheW-like domain ND012_09900 PF01627 Hpt domain ND012_09900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_09900 PF02895 Signal transducing histidine kinase, homodimeric domain ND012_09900 PF09078 CheY binding ND012_09900 PF01584 CheW-like domain ND012_09905 PF00691 OmpA family ND012_09905 PF13677 Membrane MotB of proton-channel complex MotA/MotB ND012_09910 PF01618 MotA/TolQ/ExbB proton channel family ND012_09915 PF05280 Flagellar transcriptional activator (FlhC) ND012_09920 PF05247 Flagellar transcriptional activator (FlhD) ND012_09925 PF00582 Universal stress protein family ND012_09930 PF02308 MgtC family ND012_09935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_09935 PF00672 HAMP domain ND012_09935 PF02203 Tar ligand binding domain homologue ND012_09940 PF10781 Dextransucrase DSRB ND012_09945 PF00313 'Cold-shock' DNA-binding domain ND012_09950 PF00356 Bacterial regulatory proteins, lacI family ND012_09955 PF02929 Beta galactosidase small chain ND012_09955 PF16353 Domain of unknown function(DUF4981) ND012_09955 PF00703 Glycosyl hydrolases family 2 ND012_09955 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND012_09955 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND012_09960 PF16197 Ketoacyl-synthetase C-terminal extension ND012_09960 PF00698 Acyl transferase domain ND012_09960 PF02801 Beta-ketoacyl synthase, C-terminal domain ND012_09960 PF08659 KR domain ND012_09960 PF00550 Phosphopantetheine attachment site ND012_09960 PF14765 Polyketide synthase dehydratase ND012_09960 PF08240 Alcohol dehydrogenase GroES-like domain ND012_09960 PF00109 Beta-ketoacyl synthase, N-terminal domain ND012_09960 PF00107 Zinc-binding dehydrogenase ND012_09965 PF10777 Inner membrane protein YlaC ND012_09975 PF14001 YdfZ protein ND012_09985 PF06167 Glucose-regulated metallo-peptidase M90 ND012_10005 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ND012_10005 PF01648 4'-phosphopantetheinyl transferase superfamily ND012_10010 PF00939 Sodium:sulfate symporter transmembrane region ND012_10015 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ND012_10020 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase ND012_10025 PF04223 Citrate lyase, alpha subunit (CitF) ND012_10030 PF03328 HpcH/HpaI aldolase/citrate lyase family ND012_10035 PF06857 Malonate decarboxylase delta subunit (MdcD) ND012_10040 PF08218 Citrate lyase ligase C-terminal domain ND012_10045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_10045 PF00989 PAS fold ND012_10045 PF17203 Single cache domain 3 ND012_10045 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND012_10050 PF12431 Transcriptional regulator ND012_10050 PF00072 Response regulator receiver domain ND012_10055 PF00196 Bacterial regulatory proteins, luxR family ND012_10055 PF00072 Response regulator receiver domain ND012_10060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_10060 PF07730 Histidine kinase ND012_10060 PF05231 MASE1 ND012_10065 PF07690 Major Facilitator Superfamily ND012_10075 PF00528 Binding-protein-dependent transport system inner membrane component ND012_10080 PF00005 ABC transporter ND012_10080 PF08402 TOBE domain ND012_10100 PF04363 Protein of unknown function (DUF496) ND012_10105 PF04632 Fusaric acid resistance protein family ND012_10115 PF00929 Exonuclease ND012_10115 PF08411 Exonuclease C-terminal ND012_10120 PF13520 Amino acid permease ND012_10125 PF07715 TonB-dependent Receptor Plug Domain ND012_10125 PF00593 TonB dependent receptor ND012_10130 PF00005 ABC transporter ND012_10135 PF01032 FecCD transport family ND012_10145 PF00324 Amino acid permease ND012_10150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_10150 PF03466 LysR substrate binding domain ND012_10160 PF03601 Conserved hypothetical protein 698 ND012_10165 PF01261 Xylose isomerase-like TIM barrel ND012_10170 PF02378 Phosphotransferase system, EIIC ND012_10170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND012_10175 PF00294 pfkB family carbohydrate kinase ND012_10180 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND012_10180 PF00381 PTS HPr component phosphorylation site ND012_10185 PF00293 NUDIX domain ND012_10190 PF03264 NapC/NirT cytochrome c family, N-terminal region ND012_10195 PF00384 Molybdopterin oxidoreductase ND012_10195 PF18364 Molybdopterin oxidoreductase N-terminal domain ND012_10195 PF01568 Molydopterin dinucleotide binding domain ND012_10200 PF03692 Putative zinc- or iron-chelating domain ND012_10205 PF03222 Tryptophan/tyrosine permease family ND012_10210 PF01132 Elongation factor P (EF-P) OB domain ND012_10210 PF08207 Elongation factor P (EF-P) KOW-like domain ND012_10210 PF09285 Elongation factor P, C-terminal ND012_10215 PF03786 D-mannonate dehydratase (UxuA) ND012_10220 PF08125 Mannitol dehydrogenase C-terminal domain ND012_10220 PF01232 Mannitol dehydrogenase Rossmann domain ND012_10230 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND012_10230 PF07683 Cobalamin synthesis protein cobW C-terminal domain ND012_10235 PF01569 PAP2 superfamily ND012_10240 PF00877 NlpC/P60 family ND012_10245 PF12792 CSS motif domain associated with EAL ND012_10245 PF00563 EAL domain ND012_10250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_10255 PF00528 Binding-protein-dependent transport system inner membrane component ND012_10260 PF00528 Binding-protein-dependent transport system inner membrane component ND012_10260 PF12911 N-terminal TM domain of oligopeptide transport permease C ND012_10265 PF00005 ABC transporter ND012_10265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_10270 PF13989 YejG-like protein ND012_10275 PF07690 Major Facilitator Superfamily ND012_10280 PF00849 RNA pseudouridylate synthase ND012_10280 PF01479 S4 domain ND012_10285 PF00271 Helicase conserved C-terminal domain ND012_10285 PF04851 Type III restriction enzyme, res subunit ND012_10290 PF01386 Ribosomal L25p family ND012_10295 PF04245 37-kD nucleoid-associated bacterial protein ND012_10300 PF07208 Protein of unknown function (DUF1414) ND012_10305 PF00884 Sulfatase ND012_10305 PF11893 Domain of unknown function (DUF3413) ND012_10320 PF02796 Helix-turn-helix domain of resolvase ND012_10320 PF00239 Resolvase, N terminal domain ND012_10325 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND012_10330 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND012_10345 PF04865 Baseplate J-like protein ND012_10390 PF04984 Phage tail sheath protein subtilisin-like domain ND012_10390 PF17482 Phage tail sheath C-terminal domain ND012_10430 PF01343 Peptidase family S49 ND012_10480 PF00182 Chitinase class I ND012_10505 PF06147 Protein of unknown function (DUF968) ND012_10520 PF05869 DNA N-6-adenine-methyltransferase (Dam) ND012_10525 PF03354 Phage Terminase ND012_10560 PF10065 Uncharacterized conserved protein (DUF2303) ND012_10605 PF06183 DinI-like family ND012_10610 PF12706 Beta-lactamase superfamily domain ND012_10615 PF00144 Beta-lactamase ND012_10620 PF13302 Acetyltransferase (GNAT) domain ND012_10635 PF00267 Gram-negative porin ND012_10640 PF07690 Major Facilitator Superfamily ND012_10645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_10645 PF01627 Hpt domain ND012_10645 PF16359 RcsD-ABL domain ND012_10650 PF00196 Bacterial regulatory proteins, luxR family ND012_10650 PF00072 Response regulator receiver domain ND012_10655 PF00512 His Kinase A (phospho-acceptor) domain ND012_10655 PF09456 RcsC Alpha-Beta-Loop (ABL) ND012_10655 PF00072 Response regulator receiver domain ND012_10655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_10660 PF03989 DNA gyrase C-terminal domain, beta-propeller ND012_10660 PF00521 DNA gyrase/topoisomerase IV, subunit A ND012_10670 PF00317 Ribonucleotide reductase, all-alpha domain ND012_10670 PF02867 Ribonucleotide reductase, barrel domain ND012_10670 PF03477 ATP cone domain ND012_10675 PF00268 Ribonucleotide reductase, small chain ND012_10680 PF00111 2Fe-2S iron-sulfur cluster binding domain ND012_10690 PF03974 Ecotin ND012_10695 PF00994 Probable molybdopterin binding domain ND012_10700 PF04138 GtrA-like protein ND012_10705 PF00535 Glycosyl transferase family 2 ND012_10715 PF03222 Tryptophan/tyrosine permease family ND012_10720 PF07437 YfaZ precursor ND012_10725 PF06628 Catalase-related immune-responsive ND012_10725 PF00199 Catalase ND012_10730 PF00501 AMP-binding enzyme ND012_10730 PF13193 AMP-binding enzyme C-terminal domain ND012_10735 PF13378 Enolase C-terminal domain-like ND012_10740 PF00378 Enoyl-CoA hydratase/isomerase ND012_10745 PF12697 Alpha/beta hydrolase family ND012_10750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND012_10750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND012_10750 PF16582 Middle domain of thiamine pyrophosphate ND012_10755 PF00425 chorismate binding enzyme ND012_10760 PF05957 Bacterial protein of unknown function (DUF883) ND012_10765 PF06496 Protein of unknown function (DUF1097) ND012_10770 PF00361 Proton-conducting membrane transporter ND012_10775 PF00361 Proton-conducting membrane transporter ND012_10780 PF00361 Proton-conducting membrane transporter ND012_10780 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ND012_10785 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ND012_10790 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ND012_10795 PF12838 4Fe-4S dicluster domain ND012_10800 PF00146 NADH dehydrogenase ND012_10805 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND012_10805 PF00384 Molybdopterin oxidoreductase ND012_10805 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ND012_10805 PF01568 Molydopterin dinucleotide binding domain ND012_10810 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ND012_10810 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND012_10810 PF10531 SLBB domain ND012_10820 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND012_10820 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND012_10825 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND012_10830 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ND012_10835 PF03466 LysR substrate binding domain ND012_10835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_10840 PF00155 Aminotransferase class I and II ND012_10850 PF02080 TrkA-C domain ND012_10850 PF03600 Citrate transporter ND012_10860 PF03887 YfbU domain ND012_10865 PF04217 Protein of unknown function, DUF412 ND012_10870 PF00871 Acetokinase family ND012_10875 PF07085 DRTGG domain ND012_10875 PF01515 Phosphate acetyl/butaryl transferase ND012_10880 PF00356 Bacterial regulatory proteins, lacI family ND012_10880 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND012_10885 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND012_10895 PF03611 PTS system sugar-specific permease component ND012_10900 PF00293 NUDIX domain ND012_10905 PF12850 Calcineurin-like phosphoesterase superfamily domain ND012_10915 PF00043 Glutathione S-transferase, C-terminal domain ND012_10915 PF02798 Glutathione S-transferase, N-terminal domain ND012_10920 PF08338 Domain of unknown function (DUF1731) ND012_10920 PF01370 NAD dependent epimerase/dehydratase family ND012_10925 PF00005 ABC transporter ND012_10930 PF00528 Binding-protein-dependent transport system inner membrane component ND012_10935 PF00528 Binding-protein-dependent transport system inner membrane component ND012_10940 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_10950 PF02441 Flavoprotein ND012_10955 PF00156 Phosphoribosyl transferase domain ND012_10960 PF02674 Colicin V production protein ND012_10965 PF05036 Sporulation related domain ND012_10970 PF02875 Mur ligase family, glutamate ligase domain ND012_10970 PF08245 Mur ligase middle domain ND012_10975 PF01039 Carboxyl transferase domain ND012_10975 PF17848 Acetyl-coA carboxylase zinc finger domain ND012_10980 PF09335 SNARE associated Golgi protein ND012_10985 PF01416 tRNA pseudouridine synthase ND012_10990 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND012_10990 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND012_10995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND012_10995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND012_10995 PF11890 Domain of unknown function (DUF3410) ND012_11015 PF00155 Aminotransferase class I and II ND012_11020 PF00578 AhpC/TSA family ND012_11050 PF00109 Beta-ketoacyl synthase, N-terminal domain ND012_11050 PF02801 Beta-ketoacyl synthase, C-terminal domain ND012_11055 PF01266 FAD dependent oxidoreductase ND012_11055 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ND012_11060 PF08891 YfcL protein ND012_11065 PF04315 Elongation factor P hydroxylase ND012_11070 PF01925 Sulfite exporter TauE/SafE ND012_11075 PF03411 Penicillin-insensitive murein endopeptidase ND012_11080 PF01264 Chorismate synthase ND012_11085 PF05175 Methyltransferase small domain ND012_11090 PF01713 Smr domain ND012_11095 PF00300 Histidine phosphatase superfamily (branch 1) ND012_11100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND012_11100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND012_11100 PF00378 Enoyl-CoA hydratase/isomerase ND012_11105 PF02803 Thiolase, C-terminal domain ND012_11105 PF00108 Thiolase, N-terminal domain ND012_11110 PF04175 Protein of unknown function (DUF406) ND012_11115 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ND012_11120 PF04333 MlaA lipoprotein ND012_11125 PF03918 Cytochrome C biogenesis protein ND012_11130 PF03918 Cytochrome C biogenesis protein ND012_11135 PF08534 Redoxin ND012_11140 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ND012_11140 PF01578 Cytochrome C assembly protein ND012_11145 PF03100 CcmE ND012_11150 PF04995 Heme exporter protein D (CcmD) ND012_11155 PF01578 Cytochrome C assembly protein ND012_11160 PF03379 CcmB protein ND012_11165 PF00005 ABC transporter ND012_11180 PF08274 PhnA Zinc-Ribbon ND012_11180 PF03831 PhnA domain ND012_11185 PF13406 Transglycosylase SLT domain ND012_11200 PF01292 Prokaryotic cytochrome b561 ND012_11205 PF00155 Aminotransferase class I and II ND012_11210 PF07350 Protein of unknown function (DUF1479) ND012_11215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_11215 PF06580 Histidine kinase ND012_11215 PF07694 5TMR of 5TMR-LYT ND012_11220 PF04397 LytTr DNA-binding domain ND012_11220 PF00072 Response regulator receiver domain ND012_11225 PF07690 Major Facilitator Superfamily ND012_11230 PF02685 Glucokinase ND012_11240 PF03466 LysR substrate binding domain ND012_11240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_11250 PF01566 Natural resistance-associated macrophage protein ND012_11255 PF07670 Nucleoside recognition ND012_11255 PF01773 Na+ dependent nucleoside transporter N-terminus ND012_11255 PF07662 Na+ dependent nucleoside transporter C-terminus ND012_11285 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND012_11310 PF12843 Putative quorum-sensing-regulated virulence factor ND012_11315 PF00533 BRCA1 C Terminus (BRCT) domain ND012_11315 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ND012_11315 PF12826 Helix-hairpin-helix motif ND012_11315 PF01653 NAD-dependent DNA ligase adenylation domain ND012_11315 PF03120 NAD-dependent DNA ligase OB-fold domain ND012_11320 PF04354 ZipA, C-terminal FtsZ-binding domain ND012_11330 PF00291 Pyridoxal-phosphate dependent enzyme ND012_11335 PF00381 PTS HPr component phosphorylation site ND012_11340 PF05524 PEP-utilising enzyme, N-terminal ND012_11340 PF02896 PEP-utilising enzyme, TIM barrel domain ND012_11340 PF00391 PEP-utilising enzyme, mobile domain ND012_11345 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND012_11350 PF00291 Pyridoxal-phosphate dependent enzyme ND012_11355 PF00005 ABC transporter ND012_11360 PF00528 Binding-protein-dependent transport system inner membrane component ND012_11365 PF00528 Binding-protein-dependent transport system inner membrane component ND012_11375 PF07690 Major Facilitator Superfamily ND012_11380 PF01418 Helix-turn-helix domain, rpiR family ND012_11380 PF01380 SIS domain ND012_11385 PF04074 YhcH/YjgK/YiaL ND012_11390 PF00480 ROK family ND012_11395 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ND012_11400 PF00701 Dihydrodipicolinate synthetase family ND012_11405 PF04261 Dyp-type peroxidase family ND012_11410 PF06572 Protein of unknown function (DUF1131) ND012_11415 PF04076 Bacterial OB fold (BOF) protein ND012_11475 PF00589 Phage integrase family ND012_11485 PF00583 Acetyltransferase (GNAT) family ND012_11490 PF01218 Coproporphyrinogen III oxidase ND012_11495 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ND012_11500 PF00390 Malic enzyme, N-terminal domain ND012_11500 PF03949 Malic enzyme, NAD binding domain ND012_11500 PF01515 Phosphate acetyl/butaryl transferase ND012_11505 PF00293 NUDIX domain ND012_11510 PF03264 NapC/NirT cytochrome c family, N-terminal region ND012_11515 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ND012_11520 PF01568 Molydopterin dinucleotide binding domain ND012_11520 PF00384 Molybdopterin oxidoreductase ND012_11520 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND012_11520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND012_11525 PF03927 NapD protein ND012_11530 PF00037 4Fe-4S binding domain ND012_11530 PF12800 4Fe-4S binding domain ND012_11530 PF13187 4Fe-4S dicluster domain ND012_11535 PF00196 Bacterial regulatory proteins, luxR family ND012_11535 PF00072 Response regulator receiver domain ND012_11545 PF00873 AcrB/AcrD/AcrF family ND012_11555 PF01817 Chorismate mutase type II ND012_11560 PF03960 ArsC family ND012_11565 PF07687 Peptidase dimerisation domain ND012_11565 PF01546 Peptidase family M20/M25/M40 ND012_11570 PF02557 D-alanyl-D-alanine carboxypeptidase ND012_11575 PF13980 Uncharacterised protein family (UPF0370) ND012_11580 PF02230 Phospholipase/Carboxylesterase ND012_11585 PF08351 Domain of unknown function (DUF1726) ND012_11585 PF13718 GNAT acetyltransferase 2 ND012_11585 PF05127 Helicase ND012_11585 PF17176 tRNA-binding domain ND012_11590 PF04284 Protein of unknown function (DUF441) ND012_11595 PF01259 SAICAR synthetase ND012_11600 PF06804 NlpB/DapX lipoprotein ND012_11605 PF00701 Dihydrodipicolinate synthetase family ND012_11610 PF01842 ACT domain ND012_11615 PF00578 AhpC/TSA family ND012_11620 PF01594 AI-2E family transporter ND012_11625 PF01435 Peptidase family M48 ND012_11625 PF07720 Tetratricopeptide repeat ND012_11630 PF03960 ArsC family ND012_11635 PF00308 Bacterial dnaA protein ND012_11640 PF00860 Permease family ND012_11650 PF00586 AIR synthase related protein, N-terminal domain ND012_11650 PF02769 AIR synthase related protein, C-terminal domain ND012_11655 PF00551 Formyl transferase ND012_11660 PF13302 Acetyltransferase (GNAT) domain ND012_11665 PF00005 ABC transporter ND012_11670 PF00528 Binding-protein-dependent transport system inner membrane component ND012_11675 PF00528 Binding-protein-dependent transport system inner membrane component ND012_11680 PF02503 Polyphosphate kinase middle domain ND012_11680 PF13090 Polyphosphate kinase C-terminal domain 2 ND012_11680 PF17941 Polyphosphate kinase C-terminal domain 1 ND012_11680 PF13089 Polyphosphate kinase N-terminal domain ND012_11685 PF02541 Ppx/GppA phosphatase family ND012_11695 PF01769 Divalent cation transporter ND012_11695 PF00571 CBS domain ND012_11695 PF03448 MgtE intracellular N domain ND012_11700 PF00012 Hsp70 protein ND012_11710 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_11710 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_11715 PF13953 PapC C-terminal domain ND012_11715 PF13954 PapC N-terminal domain ND012_11715 PF00577 Outer membrane usher protein ND012_11730 PF13533 Biotin-lipoyl like ND012_11735 PF00873 AcrB/AcrD/AcrF family ND012_11740 PF00873 AcrB/AcrD/AcrF family ND012_11745 PF07690 Major Facilitator Superfamily ND012_11750 PF00672 HAMP domain ND012_11750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_11750 PF00512 His Kinase A (phospho-acceptor) domain ND012_11755 PF00072 Response regulator receiver domain ND012_11755 PF00486 Transcriptional regulatory protein, C terminal ND012_11760 PF07411 Domain of unknown function (DUF1508) ND012_11765 PF01136 Peptidase family U32 ND012_11765 PF16325 Peptidase family U32 C-terminal domain ND012_11770 PF00781 Diacylglycerol kinase catalytic domain ND012_11785 PF08543 Phosphomethylpyrimidine kinase ND012_11805 PF00117 Glutamine amidotransferase class-I ND012_11805 PF00958 GMP synthase C terminal domain ND012_11805 PF02540 NAD synthase ND012_11810 PF00571 CBS domain ND012_11810 PF00478 IMP dehydrogenase / GMP reductase domain ND012_11815 PF02601 Exonuclease VII, large subunit ND012_11815 PF13742 OB-fold nucleic acid binding domain ND012_11820 PF07191 zinc-ribbons ND012_11825 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ND012_11825 PF01926 50S ribosome-binding GTPase ND012_11830 PF13360 PQQ-like domain ND012_11835 PF09976 Tetratricopeptide repeat-like domain ND012_11840 PF03129 Anticodon binding domain ND012_11840 PF13393 Histidyl-tRNA synthetase ND012_11845 PF04551 GcpE protein ND012_11850 PF13464 Domain of unknown function (DUF4115) ND012_11860 PF04055 Radical SAM superfamily ND012_11865 PF00334 Nucleoside diphosphate kinase ND012_11875 PF00905 Penicillin binding protein transpeptidase domain ND012_11875 PF00912 Transglycosylase ND012_11875 PF06832 Penicillin-Binding Protein C-terminus Family ND012_11880 PF07678 A-macroglobulin TED domain ND012_11880 PF01835 MG2 domain ND012_11880 PF17962 Bacterial macroglobulin domain 6 ND012_11880 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ND012_11880 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ND012_11880 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ND012_11880 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain ND012_11880 PF07703 Alpha-2-macroglobulin bait region domain ND012_11880 PF00207 Alpha-2-macroglobulin family ND012_11885 PF14581 SseB protein C-terminal domain ND012_11885 PF07179 SseB protein N-terminal domain ND012_11890 PF12404 Peptidase ND012_11890 PF00883 Cytosol aminopeptidase family, catalytic domain ND012_11895 PF04384 Iron-sulphur cluster assembly ND012_11900 PF00111 2Fe-2S iron-sulfur cluster binding domain ND012_11905 PF00012 Hsp70 protein ND012_11910 PF00226 DnaJ domain ND012_11910 PF07743 HSCB C-terminal oligomerisation domain ND012_11915 PF01521 Iron-sulphur cluster biosynthesis ND012_11920 PF01592 NifU-like N terminal domain ND012_11925 PF00266 Aminotransferase class-V ND012_11930 PF02082 Transcriptional regulator ND012_11935 PF00588 SpoU rRNA Methylase family ND012_11940 PF00459 Inositol monophosphatase family ND012_11945 PF03824 High-affinity nickel-transport protein ND012_11950 PF06226 Protein of unknown function (DUF1007) ND012_11955 PF00874 PRD domain ND012_11960 PF12832 MFS_1 like family ND012_11965 PF00464 Serine hydroxymethyltransferase ND012_11970 PF00042 Globin ND012_11970 PF00970 Oxidoreductase FAD-binding domain ND012_11970 PF00175 Oxidoreductase NAD-binding domain ND012_11975 PF14502 Helix-turn-helix domain ND012_11975 PF14503 YhfZ C-terminal domain ND012_11985 PF01168 Alanine racemase, N-terminal domain ND012_11990 PF02126 Phosphotriesterase family ND012_11995 PF10941 Protein of unknown function DUF2620 ND012_12000 PF10797 Protein of unknown function ND012_12005 PF00543 Nitrogen regulatory protein P-II ND012_12010 PF00795 Carbon-nitrogen hydrolase ND012_12010 PF02540 NAD synthase ND012_12015 PF00072 Response regulator receiver domain ND012_12015 PF00158 Sigma-54 interaction domain ND012_12020 PF13942 YfhG lipoprotein ND012_12025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_12025 PF00512 His Kinase A (phospho-acceptor) domain ND012_12035 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ND012_12035 PF02769 AIR synthase related protein, C-terminal domain ND012_12035 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ND012_12040 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_12040 PF01464 Transglycosylase SLT domain ND012_12045 PF14437 MafB19-like deaminase ND012_12055 PF00367 phosphotransferase system, EIIB ND012_12055 PF02378 Phosphotransferase system, EIIC ND012_12060 PF01380 SIS domain ND012_12065 PF01380 SIS domain ND012_12065 PF01418 Helix-turn-helix domain, rpiR family ND012_12070 PF12838 4Fe-4S dicluster domain ND012_12075 PF01648 4'-phosphopantetheinyl transferase superfamily ND012_12080 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ND012_12085 PF11967 Recombination protein O N terminal ND012_12085 PF02565 Recombination protein O C terminal ND012_12090 PF07650 KH domain ND012_12090 PF01926 50S ribosome-binding GTPase ND012_12095 PF14622 Ribonuclease-III-like ND012_12095 PF00035 Double-stranded RNA binding motif ND012_12100 PF10502 Signal peptidase, peptidase S26 ND012_12105 PF03144 Elongation factor Tu domain 2 ND012_12105 PF00679 Elongation factor G C-terminus ND012_12105 PF06421 GTP-binding protein LepA C-terminus ND012_12105 PF00009 Elongation factor Tu GTP binding domain ND012_12115 PF03888 MucB/RseB N-terminal domain ND012_12115 PF17188 MucB/RseB C-terminal domain ND012_12120 PF03873 Anti sigma-E protein RseA, C-terminal domain ND012_12120 PF03872 Anti sigma-E protein RseA, N-terminal domain ND012_12125 PF04542 Sigma-70 region 2 ND012_12125 PF08281 Sigma-70, region 4 ND012_12130 PF00890 FAD binding domain ND012_12130 PF02910 Fumarate reductase flavoprotein C-term ND012_12135 PF05175 Methyltransferase small domain ND012_12140 PF00270 DEAD/DEAH box helicase ND012_12140 PF00271 Helicase conserved C-terminal domain ND012_12145 PF12796 Ankyrin repeats (3 copies) ND012_12155 PF01228 Glycine radical ND012_12160 PF03167 Uracil DNA glycosylase superfamily ND012_12165 PF01025 GrpE ND012_12170 PF01513 ATP-NAD kinase ND012_12175 PF02463 RecF/RecN/SMC N terminal domain ND012_12180 PF04355 SmpA / OmlA family ND012_12185 PF03658 RnfH family Ubiquitin ND012_12190 PF03364 Polyketide cyclase / dehydrase and lipid transport ND012_12195 PF01668 SmpB protein ND012_12205 PF13356 Arm DNA-binding domain ND012_12205 PF00589 Phage integrase family ND012_12320 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_12320 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_12325 PF00577 Outer membrane usher protein ND012_12325 PF13954 PapC N-terminal domain ND012_12325 PF13953 PapC C-terminal domain ND012_12340 PF00239 Resolvase, N terminal domain ND012_12340 PF02796 Helix-turn-helix domain of resolvase ND012_12360 PF01527 Transposase ND012_12370 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND012_12370 PF18413 Neuraminidase-like domain ND012_12370 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND012_12370 PF18413 Neuraminidase-like domain ND012_12380 PF12256 Insecticide toxin TcdB middle/N-terminal region ND012_12380 PF03534 Salmonella virulence plasmid 65kDa B protein ND012_12380 PF12255 Insecticide toxin TcdB middle/C-terminal region ND012_12385 PF14431 YwqJ-like deaminase ND012_12385 PF18807 Tripartite Tc toxins repeat ND012_12415 PF01380 SIS domain ND012_12415 PF00571 CBS domain ND012_12420 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND012_12420 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND012_12430 PF02653 Branched-chain amino acid transport system / permease component ND012_12435 PF00005 ABC transporter ND012_12445 PF00561 alpha/beta hydrolase fold ND012_12450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_12450 PF03466 LysR substrate binding domain ND012_12455 PF02652 L-lactate permease ND012_12460 PF01070 FMN-dependent dehydrogenase ND012_12465 PF06039 Malate:quinone oxidoreductase (Mqo) ND012_12470 PF00313 'Cold-shock' DNA-binding domain ND012_12480 PF06711 Protein of unknown function (DUF1198) ND012_12485 PF09400 Protein of unknown function (DUF2002) ND012_12500 PF07972 NrdI Flavodoxin like ND012_12505 PF02867 Ribonucleotide reductase, barrel domain ND012_12505 PF08343 Ribonucleotide reductase N-terminal ND012_12505 PF00317 Ribonucleotide reductase, all-alpha domain ND012_12510 PF00268 Ribonucleotide reductase, small chain ND012_12515 PF00571 CBS domain ND012_12515 PF00005 ABC transporter ND012_12520 PF00528 Binding-protein-dependent transport system inner membrane component ND012_12525 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND012_12530 PF07690 Major Facilitator Superfamily ND012_12535 PF01047 MarR family ND012_12545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND012_12545 PF00529 HlyD membrane-fusion protein of T1SS ND012_12550 PF07690 Major Facilitator Superfamily ND012_12555 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND012_12555 PF00588 SpoU rRNA Methylase family ND012_12560 PF00085 Thioredoxin ND012_12565 PF03942 DTW domain ND012_12570 PF13607 Succinyl-CoA ligase like flavodoxin domain ND012_12570 PF13380 CoA binding domain ND012_12570 PF00583 Acetyltransferase (GNAT) family ND012_12575 PF13091 PLD-like domain ND012_12580 PF10043 Predicted periplasmic lipoprotein (DUF2279) ND012_12610 PF00005 ABC transporter ND012_12610 PF09383 NIL domain ND012_12615 PF00528 Binding-protein-dependent transport system inner membrane component ND012_12620 PF03180 NLPA lipoprotein ND012_12625 PF16358 RcsF lipoprotein ND012_12630 PF01980 tRNA-methyltransferase O ND012_12630 PF18389 TrmO C-terminal domain ND012_12635 PF03129 Anticodon binding domain ND012_12635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND012_12635 PF04073 Aminoacyl-tRNA editing domain ND012_12640 PF04170 NlpE N-terminal domain ND012_12640 PF17185 NlpE C-terminal OB domain ND012_12645 PF00472 RF-1 domain ND012_12650 PF07152 YaeQ protein ND012_12655 PF06786 Uncharacterised protein family (UPF0253) ND012_12660 PF07073 Modulator of Rho-dependent transcription termination (ROF) ND012_12665 PF00034 Cytochrome c ND012_12670 PF09179 TilS substrate binding domain ND012_12670 PF11734 TilS substrate C-terminal domain ND012_12670 PF01171 PP-loop family ND012_12675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND012_12690 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ND012_12695 PF07733 Bacterial DNA polymerase III alpha NTPase domain ND012_12695 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ND012_12695 PF14579 Helix-hairpin-helix motif ND012_12695 PF02811 PHP domain ND012_12695 PF01336 OB-fold nucleic acid binding domain ND012_12700 PF01351 Ribonuclease HII ND012_12705 PF02684 Lipid-A-disaccharide synthetase ND012_12710 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_12710 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ND012_12715 PF07977 FabA-like domain ND012_12720 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_12720 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ND012_12725 PF03938 Outer membrane protein (OmpH-like) ND012_12730 PF01103 Surface antigen ND012_12730 PF07244 Surface antigen variable number repeat ND012_12735 PF17820 PDZ domain ND012_12735 PF02163 Peptidase family M50 ND012_12745 PF01255 Putative undecaprenyl diphosphate synthase ND012_12750 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ND012_12750 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ND012_12750 PF13288 DXP reductoisomerase C-terminal domain ND012_12755 PF01765 Ribosome recycling factor ND012_12760 PF00696 Amino acid kinase family ND012_12765 PF00889 Elongation factor TS ND012_12770 PF00318 Ribosomal protein S2 ND012_12780 PF00557 Metallopeptidase family M24 ND012_12785 PF08335 GlnD PII-uridylyltransferase ND012_12785 PF01842 ACT domain ND012_12785 PF01909 Nucleotidyltransferase domain ND012_12785 PF01966 HD domain ND012_12790 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_12790 PF14602 Hexapeptide repeat of succinyl-transferase ND012_12790 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ND012_12795 PF11944 Protein of unknown function (DUF3461) ND012_12800 PF00258 Flavodoxin ND012_12805 PF00849 RNA pseudouridylate synthase ND012_12810 PF04287 tRNA pseudouridine synthase C ND012_12815 PF07348 Syd protein (SUKH-2) ND012_12820 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ND012_12820 PF14489 QueF-like protein ND012_12825 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ND012_12825 PF03641 Possible lysine decarboxylase ND012_12825 PF11892 Domain of unknown function (DUF3412) ND012_12830 PF01367 5'-3' exonuclease, C-terminal SAM fold ND012_12830 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND012_12835 PF01728 FtsJ-like methyltransferase ND012_12835 PF18125 RlmM ferredoxin-like domain ND012_12840 PF04241 Protein of unknown function (DUF423) ND012_12845 PF03466 LysR substrate binding domain ND012_12845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_12850 PF06004 Bacterial protein of unknown function (DUF903) ND012_12855 PF00266 Aminotransferase class-V ND012_12860 PF02657 Fe-S metabolism associated domain ND012_12865 PF00899 ThiF family ND012_12870 PF03562 MltA specific insert domain ND012_12870 PF06725 3D domain ND012_12890 PF11741 AMIN domain ND012_12890 PF01520 N-acetylmuramoyl-L-alanine amidase ND012_12895 PF00696 Amino acid kinase family ND012_12895 PF00583 Acetyltransferase (GNAT) family ND012_12900 PF13538 UvrD-like helicase C-terminal domain ND012_12905 PF13361 UvrD-like helicase C-terminal domain ND012_12905 PF00580 UvrD/REP helicase N-terminal domain ND012_12905 PF12705 PD-(D/E)XK nuclease superfamily ND012_12910 PF00675 Insulinase (Peptidase family M16) ND012_12910 PF05193 Peptidase M16 inactive domain ND012_12910 PF16187 Middle or third domain of peptidase_M16 ND012_12915 PF17946 RecC C-terminal domain ND012_12920 PF12528 Type II secretion prepilin peptidase dependent protein C ND012_12920 PF07963 Prokaryotic N-terminal methylation motif ND012_12935 PF07963 Prokaryotic N-terminal methylation motif ND012_12935 PF00114 Pilin (bacterial filament) ND012_12940 PF00303 Thymidylate synthase ND012_12945 PF01790 Prolipoprotein diacylglyceryl transferase ND012_12950 PF00391 PEP-utilising enzyme, mobile domain ND012_12950 PF02896 PEP-utilising enzyme, TIM barrel domain ND012_12950 PF01590 GAF domain ND012_12950 PF05524 PEP-utilising enzyme, N-terminal ND012_12955 PF00293 NUDIX domain ND012_12960 PF02976 DNA mismatch repair enzyme MutH ND012_12965 PF03741 Integral membrane protein TerC family ND012_12970 PF00248 Aldo/keto reductase family ND012_12975 PF07690 Major Facilitator Superfamily ND012_12980 PF01553 Acyltransferase ND012_12980 PF00501 AMP-binding enzyme ND012_12980 PF13193 AMP-binding enzyme C-terminal domain ND012_12990 PF00356 Bacterial regulatory proteins, lacI family ND012_12995 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ND012_12995 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND012_13000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_13000 PF03466 LysR substrate binding domain ND012_13005 PF03466 LysR substrate binding domain ND012_13005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_13045 PF07963 Prokaryotic N-terminal methylation motif ND012_13045 PF11612 Type II secretion system (T2SS), protein J ND012_13050 PF07963 Prokaryotic N-terminal methylation motif ND012_13050 PF02501 Type II secretion system (T2SS), protein I ND012_13060 PF07963 Prokaryotic N-terminal methylation motif ND012_13060 PF08334 Type II secretion system (T2SS), protein G ND012_13065 PF00482 Type II secretion system (T2SS), protein F ND012_13070 PF00437 Type II/IV secretion system protein ND012_13075 PF03958 Bacterial type II/III secretion system short domain ND012_13075 PF00263 Bacterial type II and III secretion system protein ND012_13100 PF00005 ABC transporter ND012_13105 PF02405 Permease MlaE ND012_13115 PF00152 tRNA synthetases class II (D, K and N) ND012_13115 PF01336 OB-fold nucleic acid binding domain ND012_13125 PF01368 DHH family ND012_13125 PF02272 DHHA1 domain ND012_13125 PF17768 RecJ OB domain ND012_13130 PF10411 Disulfide bond isomerase protein N-terminus ND012_13130 PF13098 Thioredoxin-like domain ND012_13135 PF00589 Phage integrase family ND012_13135 PF02899 Phage integrase, N-terminal SAM-like domain ND012_13140 PF00258 Flavodoxin ND012_13145 PF07254 Membrane-bound toxin component of toxin-antitoxin system ND012_13150 PF03937 Flavinator of succinate dehydrogenase ND012_13155 PF01571 Aminomethyltransferase folate-binding domain ND012_13160 PF03006 Haemolysin-III related ND012_13170 PF02347 Glycine cleavage system P-protein ND012_13175 PF01597 Glycine cleavage H-protein ND012_13180 PF08669 Glycine cleavage T-protein C-terminal barrel domain ND012_13180 PF01571 Aminomethyltransferase folate-binding domain ND012_13185 PF01494 FAD binding domain ND012_13190 PF01494 FAD binding domain ND012_13195 PF00557 Metallopeptidase family M24 ND012_13195 PF05195 Aminopeptidase P, N-terminal domain ND012_13200 PF03695 Uncharacterised protein family (UPF0149) ND012_13205 PF05164 Cell division protein ZapA ND012_13215 PF01812 5-formyltetrahydrofolate cyclo-ligase family ND012_13220 PF01842 ACT domain ND012_13220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND012_13220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND012_13225 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ND012_13230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_13230 PF03466 LysR substrate binding domain ND012_13235 PF04402 Protein of unknown function (DUF541) ND012_13240 PF01810 LysE type translocator ND012_13245 PF00924 Mechanosensitive ion channel ND012_13245 PF05552 Conserved TM helix ND012_13250 PF01116 Fructose-bisphosphate aldolase class-II ND012_13255 PF00162 Phosphoglycerate kinase ND012_13260 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND012_13260 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND012_13265 PF02779 Transketolase, pyrimidine binding domain ND012_13265 PF02780 Transketolase, C-terminal domain ND012_13265 PF00456 Transketolase, thiamine diphosphate binding domain ND012_13275 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND012_13275 PF17944 Arginine decarboxylase C-terminal helical extension ND012_13275 PF17810 Arginine decarboxylase helical bundle domain ND012_13280 PF02773 S-adenosylmethionine synthetase, C-terminal domain ND012_13280 PF02772 S-adenosylmethionine synthetase, central domain ND012_13280 PF00438 S-adenosylmethionine synthetase, N-terminal domain ND012_13290 PF04143 Sulphur transport ND012_13300 PF10263 SprT-like family ND012_13300 PF17283 SprT-like zinc ribbon domain ND012_13305 PF04231 Endonuclease I ND012_13310 PF04452 RNA methyltransferase ND012_13315 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ND012_13315 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ND012_13320 PF02622 Uncharacterized ACR, COG1678 ND012_13325 PF03652 Holliday junction resolvase ND012_13330 PF00795 Carbon-nitrogen hydrolase ND012_13335 PF04371 Porphyromonas-type peptidyl-arginine deiminase ND012_13340 PF00437 Type II/IV secretion system protein ND012_13345 PF01168 Alanine racemase, N-terminal domain ND012_13350 PF03807 NADP oxidoreductase coenzyme F420-dependent ND012_13350 PF14748 Pyrroline-5-carboxylate reductase dimerisation ND012_13355 PF02325 YGGT family ND012_13360 PF02594 Uncharacterised ACR, YggU family COG1872 ND012_13365 PF01725 Ham1 family ND012_13370 PF04055 Radical SAM superfamily ND012_13370 PF06969 HemN C-terminal domain ND012_13375 PF11101 Protein of unknown function (DUF2884) ND012_13380 PF04960 Glutaminase ND012_13385 PF04320 Protein with unknown function (DUF469) ND012_13390 PF02390 Putative methyltransferase ND012_13395 PF10576 Iron-sulfur binding domain of endonuclease III ND012_13395 PF00633 Helix-hairpin-helix motif ND012_13395 PF00730 HhH-GPD superfamily base excision DNA repair protein ND012_13395 PF14815 NUDIX domain ND012_13400 PF04362 Bacterial Fe(2+) trafficking ND012_13405 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ND012_13405 PF01464 Transglycosylase SLT domain ND012_13440 PF00294 pfkB family carbohydrate kinase ND012_13445 PF01228 Glycine radical ND012_13445 PF02901 Pyruvate formate lyase-like ND012_13450 PF00871 Acetokinase family ND012_13455 PF01490 Transmembrane amino acid transporter protein ND012_13460 PF00291 Pyridoxal-phosphate dependent enzyme ND012_13465 PF00501 AMP-binding enzyme ND012_13465 PF00668 Condensation domain ND012_13465 PF00550 Phosphopantetheine attachment site ND012_13465 PF00975 Thioesterase domain ND012_13465 PF13193 AMP-binding enzyme C-terminal domain ND012_13475 PF00857 Isochorismatase family ND012_13475 PF00550 Phosphopantetheine attachment site ND012_13480 PF00501 AMP-binding enzyme ND012_13480 PF13193 AMP-binding enzyme C-terminal domain ND012_13485 PF00425 chorismate binding enzyme ND012_13490 PF01497 Periplasmic binding protein ND012_13495 PF05977 Transmembrane secretion effector ND012_13500 PF01032 FecCD transport family ND012_13505 PF01032 FecCD transport family ND012_13510 PF00005 ABC transporter ND012_13520 PF00668 Condensation domain ND012_13520 PF00975 Thioesterase domain ND012_13520 PF00550 Phosphopantetheine attachment site ND012_13520 PF13193 AMP-binding enzyme C-terminal domain ND012_13520 PF00501 AMP-binding enzyme ND012_13525 PF03621 MbtH-like protein ND012_13530 PF00756 Putative esterase ND012_13530 PF11806 Domain of unknown function (DUF3327) ND012_13535 PF07715 TonB-dependent Receptor Plug Domain ND012_13535 PF00593 TonB dependent receptor ND012_13540 PF08501 Shikimate dehydrogenase substrate binding domain ND012_13565 PF13629 Pilus formation protein N terminal region ND012_13565 PF00263 Bacterial type II and III secretion system protein ND012_13565 PF04972 BON domain ND012_13580 PF00437 Type II/IV secretion system protein ND012_13615 PF02472 Biopolymer transport protein ExbD/TolR ND012_13620 PF01618 MotA/TolQ/ExbB proton channel family ND012_13625 PF01053 Cys/Met metabolism PLP-dependent enzyme ND012_13630 PF09335 SNARE associated Golgi protein ND012_13635 PF06719 AraC-type transcriptional regulator N-terminus ND012_13635 PF12833 Helix-turn-helix domain ND012_13640 PF00465 Iron-containing alcohol dehydrogenase ND012_13645 PF00248 Aldo/keto reductase family ND012_13650 PF04055 Radical SAM superfamily ND012_13650 PF08497 Radical SAM N-terminal ND012_13650 PF11842 Domain of unknown function (DUF3362) ND012_13655 PF07731 Multicopper oxidase ND012_13655 PF07732 Multicopper oxidase ND012_13660 PF01553 Acyltransferase ND012_13665 PF03989 DNA gyrase C-terminal domain, beta-propeller ND012_13665 PF00521 DNA gyrase/topoisomerase IV, subunit A ND012_13670 PF02525 Flavodoxin-like fold ND012_13675 PF03466 LysR substrate binding domain ND012_13675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_13680 PF00204 DNA gyrase B ND012_13680 PF01751 Toprim domain ND012_13680 PF00986 DNA gyrase B subunit, carboxyl terminus ND012_13680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_13685 PF05728 Uncharacterised protein family (UPF0227) ND012_13690 PF00149 Calcineurin-like phosphoesterase ND012_13695 PF06853 Protein of unknown function (DUF1249) ND012_13700 PF00293 NUDIX domain ND012_13705 PF02321 Outer membrane efflux protein ND012_13710 PF06693 Protein of unknown function (DUF1190) ND012_13715 PF03738 Glutathionylspermidine synthase preATP-grasp ND012_13720 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ND012_13725 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ND012_13730 PF04380 Membrane fusogenic activity ND012_13740 PF01467 Cytidylyltransferase-like ND012_13740 PF00294 pfkB family carbohydrate kinase ND012_13745 PF03710 Glutamate-ammonia ligase adenylyltransferase ND012_13745 PF08335 GlnD PII-uridylyltransferase ND012_13750 PF01928 CYTH domain ND012_13755 PF08239 Bacterial SH3 domain ND012_13760 PF01966 HD domain ND012_13760 PF12627 Probable RNA and SrmB- binding site of polymerase A ND012_13760 PF01743 Poly A polymerase head domain ND012_13765 PF02673 Bacitracin resistance protein BacA ND012_13770 PF02152 Dihydroneopterin aldolase ND012_13775 PF02660 Glycerol-3-phosphate acyltransferase ND012_13780 PF00814 Glycoprotease family ND012_13785 PF01165 Ribosomal protein S21 ND012_13790 PF08275 DNA primase catalytic core, N-terminal domain ND012_13790 PF01807 CHC2 zinc finger ND012_13790 PF08278 DNA primase DnaG DnaB-binding ND012_13790 PF10410 DnaB-helicase binding domain of primase ND012_13795 PF03979 Sigma-70 factor, region 1.1 ND012_13795 PF00140 Sigma-70 factor, region 1.2 ND012_13795 PF04542 Sigma-70 region 2 ND012_13795 PF04539 Sigma-70 region 3 ND012_13795 PF04545 Sigma-70, region 4 ND012_13795 PF04546 Sigma-70, non-essential region ND012_13810 PF06755 CbtA_toxin of type IV toxin-antitoxin system ND012_13815 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A ND012_13820 PF04002 RadC-like JAB domain ND012_13830 PF01348 Type II intron maturase ND012_13830 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ND012_13855 PF08220 DeoR-like helix-turn-helix domain ND012_13855 PF13280 WYL domain ND012_13860 PF01926 50S ribosome-binding GTPase ND012_13930 PF00106 short chain dehydrogenase ND012_13955 PF08241 Methyltransferase domain ND012_13960 PF00535 Glycosyl transferase family 2 ND012_13975 PF04829 Pre-toxin domain with VENN motif ND012_13975 PF05860 haemagglutination activity domain ND012_13975 PF13332 Hemagglutinin repeat ND012_13975 PF13018 Extended Signal Peptide of Type V secretion system ND012_13980 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND012_13980 PF17287 POTRA domain ND012_13980 PF08479 POTRA domain, ShlB-type ND012_13985 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND012_13985 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_13990 PF05175 Methyltransferase small domain ND012_14000 PF01863 Protein of unknown function DUF45 ND012_14005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND012_14010 PF03741 Integral membrane protein TerC family ND012_14015 PF00375 Sodium:dicarboxylate symporter family ND012_14020 PF10688 Bacterial inner membrane protein ND012_14025 PF08666 SAF domain ND012_14025 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ND012_14030 PF08125 Mannitol dehydrogenase C-terminal domain ND012_14030 PF01232 Mannitol dehydrogenase Rossmann domain ND012_14035 PF02614 Glucuronate isomerase ND012_14040 PF07690 Major Facilitator Superfamily ND012_14045 PF07729 FCD domain ND012_14045 PF00392 Bacterial regulatory proteins, gntR family ND012_14055 PF09335 SNARE associated Golgi protein ND012_14060 PF13721 SecD export protein N-terminal TM region ND012_14070 PF05957 Bacterial protein of unknown function (DUF883) ND012_14075 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ND012_14080 PF13997 YqjK-like protein ND012_14085 PF07681 DoxX ND012_14090 PF03466 LysR substrate binding domain ND012_14090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_14095 PF02678 Pirin ND012_14095 PF17954 Quercetinase C-terminal cupin domain ND012_14110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND012_14115 PF04348 LppC putative lipoprotein ND012_14120 PF02021 Uncharacterised protein family UPF0102 ND012_14125 PF13580 SIS domain ND012_14130 PF04972 BON domain ND012_14135 PF00912 Transglycosylase ND012_14145 PF00512 His Kinase A (phospho-acceptor) domain ND012_14145 PF01627 Hpt domain ND012_14145 PF00989 PAS fold ND012_14145 PF00072 Response regulator receiver domain ND012_14145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_14145 PF18415 Histidine kinase receptor ArcB trans-membrane domain ND012_14150 PF04055 Radical SAM superfamily ND012_14150 PF16199 Radical_SAM C-terminal domain ND012_14155 PF04898 Glutamate synthase central domain ND012_14155 PF01645 Conserved region in glutamate synthase ND012_14155 PF01493 GXGXG motif ND012_14155 PF00310 Glutamine amidotransferases class-II ND012_14160 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_14160 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ND012_14170 PF04386 Stringent starvation protein B ND012_14175 PF00043 Glutathione S-transferase, C-terminal domain ND012_14175 PF02798 Glutathione S-transferase, N-terminal domain ND012_14180 PF00380 Ribosomal protein S9/S16 ND012_14185 PF00572 Ribosomal protein L13 ND012_14190 PF03969 AFG1-like ATPase ND012_14195 PF06295 Protein of unknown function (DUF1043) ND012_14200 PF13180 PDZ domain ND012_14200 PF00595 PDZ domain ND012_14205 PF13180 PDZ domain ND012_14210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND012_14215 PF01722 BolA-like protein ND012_14220 PF13466 STAS domain ND012_14225 PF05494 MlaC protein ND012_14230 PF02470 MlaD protein ND012_14235 PF02405 Permease MlaE ND012_14240 PF00005 ABC transporter ND012_14245 PF01699 Sodium/calcium exchanger protein ND012_14250 PF01380 SIS domain ND012_14250 PF00571 CBS domain ND012_14260 PF06835 Lipopolysaccharide-assembly, LptC-related ND012_14265 PF03968 OstA-like protein ND012_14270 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND012_14270 PF00005 ABC transporter ND012_14275 PF04552 Sigma-54, DNA binding domain ND012_14275 PF04963 Sigma-54 factor, core binding domain ND012_14275 PF00309 Sigma-54 factor, Activator interacting domain (AID) ND012_14280 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND012_14285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND012_14290 PF03668 P-loop ATPase protein family ND012_14295 PF00381 PTS HPr component phosphorylation site ND012_14300 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND012_14300 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND012_14305 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ND012_14305 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ND012_14310 PF01042 Endoribonuclease L-PSP ND012_14315 PF11941 Domain of unknown function (DUF3459) ND012_14315 PF00128 Alpha amylase, catalytic domain ND012_14320 PF02378 Phosphotransferase system, EIIC ND012_14320 PF00367 phosphotransferase system, EIIB ND012_14325 PF00356 Bacterial regulatory proteins, lacI family ND012_14330 PF00689 Cation transporting ATPase, C-terminus ND012_14330 PF00690 Cation transporter/ATPase, N-terminus ND012_14340 PF14760 Rnk N-terminus ND012_14340 PF01272 Transcription elongation factor, GreA/GreB, C-term ND012_14345 PF07361 Cytochrome b562 ND012_14350 PF01523 Putative modulator of DNA gyrase ND012_14355 PF04751 Protein of unknown function (DUF615) ND012_14360 PF01337 Barstar (barnase inhibitor) ND012_14365 PF00545 ribonuclease ND012_14370 PF00171 Aldehyde dehydrogenase family ND012_14375 PF04632 Fusaric acid resistance protein family ND012_14380 PF13533 Biotin-lipoyl like ND012_14385 PF07869 Protein of unknown function (DUF1656) ND012_14390 PF03466 LysR substrate binding domain ND012_14390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_14395 PF01523 Putative modulator of DNA gyrase ND012_14400 PF00795 Carbon-nitrogen hydrolase ND012_14405 PF13502 AsmA-like C-terminal region ND012_14405 PF13116 Protein of unknown function ND012_14410 PF10150 Ribonuclease E/G family ND012_14410 PF00575 S1 RNA binding domain ND012_14415 PF02545 Maf-like protein ND012_14420 PF04093 rod shape-determining protein MreD ND012_14425 PF04085 rod shape-determining protein MreC ND012_14435 PF00563 EAL domain ND012_14435 PF17157 Gammaproteobacterial periplasmic sensor domain ND012_14435 PF00990 Diguanylate cyclase, GGDEF domain ND012_14440 PF00107 Zinc-binding dehydrogenase ND012_14440 PF08240 Alcohol dehydrogenase GroES-like domain ND012_14445 PF00174 Oxidoreductase molybdopterin binding domain ND012_14450 PF01794 Ferric reductase like transmembrane component ND012_14455 PF01220 Dehydroquinase class II ND012_14460 PF00364 Biotin-requiring enzyme ND012_14465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND012_14465 PF00289 Biotin carboxylase, N-terminal domain ND012_14465 PF02785 Biotin carboxylase C-terminal domain ND012_14470 PF06196 Protein of unknown function (DUF997) ND012_14475 PF00474 Sodium:solute symporter family ND012_14485 PF01207 Dihydrouridine synthase (Dus) ND012_14490 PF02954 Bacterial regulatory protein, Fis family ND012_14500 PF03279 Bacterial lipid A biosynthesis acyltransferase ND012_14505 PF00484 Carbonic anhydrase ND012_14510 PF04172 LrgB-like family ND012_14515 PF03788 LrgA family ND012_14520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_14520 PF03466 LysR substrate binding domain ND012_14525 PF00999 Sodium/hydrogen exchanger family ND012_14530 PF00860 Permease family ND012_14540 PF00436 Single-strand binding protein family ND012_14545 PF00005 ABC transporter ND012_14545 PF17755 UvrA DNA-binding domain ND012_14545 PF17760 UvrA interaction domain ND012_14550 PF04237 YjbR ND012_14555 PF00155 Aminotransferase class I and II ND012_14560 PF00842 Alanine racemase, C-terminal domain ND012_14560 PF01168 Alanine racemase, N-terminal domain ND012_14565 PF00772 DnaB-like helicase N terminal domain ND012_14565 PF03796 DnaB-like helicase C terminal domain ND012_14570 PF08240 Alcohol dehydrogenase GroES-like domain ND012_14570 PF00107 Zinc-binding dehydrogenase ND012_14575 PF09583 Phage shock protein G (Phageshock_PspG) ND012_14580 PF01207 Dihydrouridine synthase (Dus) ND012_14585 PF01475 Ferric uptake regulator family ND012_14590 PF00717 Peptidase S24-like ND012_14590 PF01726 LexA DNA binding domain ND012_14595 PF01219 Prokaryotic diacylglycerol kinase ND012_14600 PF01553 Acyltransferase ND012_14605 PF01040 UbiA prenyltransferase family ND012_14610 PF04345 Chorismate lyase ND012_14615 PF07148 Maltose operon periplasmic protein precursor (MalM) ND012_14620 PF02264 LamB porin ND012_14625 PF00005 ABC transporter ND012_14625 PF17912 MalK OB fold domain ND012_14635 PF01547 Bacterial extracellular solute-binding protein ND012_14640 PF14785 Maltose transport system permease protein MalF P2 domain ND012_14640 PF00528 Binding-protein-dependent transport system inner membrane component ND012_14645 PF00528 Binding-protein-dependent transport system inner membrane component ND012_14650 PF06146 Phosphate-starvation-inducible E ND012_14655 PF00342 Phosphoglucose isomerase ND012_14660 PF00696 Amino acid kinase family ND012_14660 PF01842 ACT domain ND012_14665 PF08479 POTRA domain, ShlB-type ND012_14665 PF17287 POTRA domain ND012_14665 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND012_14670 PF13332 Hemagglutinin repeat ND012_14670 PF05860 haemagglutination activity domain ND012_14675 PF04488 Glycosyltransferase sugar-binding region containing DXD motif ND012_14685 PF17758 Proteasomal ATPase OB N-terminal domain ND012_14685 PF16450 Proteasomal ATPase OB C-terminal domain ND012_14685 PF00004 ATPase family associated with various cellular activities (AAA) ND012_14765 PF03466 LysR substrate binding domain ND012_14765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_14780 PF02574 Homocysteine S-methyltransferase ND012_14780 PF00809 Pterin binding enzyme ND012_14780 PF02965 Vitamin B12 dependent methionine synthase, activation domain ND012_14780 PF02607 B12 binding domain ND012_14780 PF02310 B12 binding domain ND012_14785 PF09339 IclR helix-turn-helix domain ND012_14785 PF01614 Bacterial transcriptional regulator ND012_14790 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ND012_14795 PF00463 Isocitrate lyase family ND012_14800 PF01274 Malate synthase ND012_14805 PF04204 Homoserine O-succinyltransferase ND012_14840 PF01808 AICARFT/IMPCHase bienzyme ND012_14840 PF02142 MGS-like domain ND012_14845 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ND012_14845 PF02844 Phosphoribosylglycinamide synthetase, N domain ND012_14845 PF02843 Phosphoribosylglycinamide synthetase, C domain ND012_14850 PF07356 Protein of unknown function (DUF1481) ND012_14855 PF00216 Bacterial DNA-binding protein ND012_14860 PF04222 Protein of unknown function (DUF416) ND012_14865 PF04493 Endonuclease V ND012_14870 PF01208 Uroporphyrinogen decarboxylase (URO-D) ND012_14875 PF00293 NUDIX domain ND012_14875 PF09297 NADH pyrophosphatase zinc ribbon domain ND012_14880 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ND012_14885 PF01964 Radical SAM ThiC family ND012_14885 PF13667 ThiC-associated domain ND012_14890 PF02581 Thiamine monophosphate synthase ND012_14895 PF00899 ThiF family ND012_14900 PF02597 ThiS family ND012_14905 PF05690 Thiazole biosynthesis protein ThiG ND012_14910 PF04055 Radical SAM superfamily ND012_14910 PF06968 Biotin and Thiamin Synthesis associated domain ND012_14915 PF04997 RNA polymerase Rpb1, domain 1 ND012_14915 PF05000 RNA polymerase Rpb1, domain 4 ND012_14915 PF04998 RNA polymerase Rpb1, domain 5 ND012_14915 PF04983 RNA polymerase Rpb1, domain 3 ND012_14915 PF00623 RNA polymerase Rpb1, domain 2 ND012_14920 PF04561 RNA polymerase Rpb2, domain 2 ND012_14920 PF04565 RNA polymerase Rpb2, domain 3 ND012_14920 PF10385 RNA polymerase beta subunit external 1 domain ND012_14920 PF00562 RNA polymerase Rpb2, domain 6 ND012_14920 PF04560 RNA polymerase Rpb2, domain 7 ND012_14920 PF04563 RNA polymerase beta subunit ND012_14925 PF00542 Ribosomal protein L7/L12 C-terminal domain ND012_14925 PF16320 Ribosomal protein L7/L12 dimerisation domain ND012_14930 PF00466 Ribosomal protein L10 ND012_14935 PF00687 Ribosomal protein L1p/L10e family ND012_14940 PF00298 Ribosomal protein L11, RNA binding domain ND012_14940 PF03946 Ribosomal protein L11, N-terminal domain ND012_14945 PF02357 Transcription termination factor nusG ND012_14945 PF00467 KOW motif ND012_14950 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ND012_14955 PF03143 Elongation factor Tu C-terminal domain ND012_14955 PF03144 Elongation factor Tu domain 2 ND012_14955 PF00009 Elongation factor Tu GTP binding domain ND012_14980 PF00485 Phosphoribulokinase / Uridine kinase family ND012_14985 PF08279 HTH domain ND012_14985 PF03099 Biotin/lipoate A/B protein ligase family ND012_14985 PF02237 Biotin protein ligase C terminal domain ND012_14990 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ND012_14990 PF01565 FAD binding domain ND012_15020 PF12724 Flavodoxin domain ND012_15025 PF02386 Cation transport protein ND012_15030 PF01205 Uncharacterized protein family UPF0029 ND012_15030 PF09186 Domain of unknown function (DUF1949) ND012_15035 PF00557 Metallopeptidase family M24 ND012_15040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND012_15040 PF00378 Enoyl-CoA hydratase/isomerase ND012_15040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND012_15045 PF02803 Thiolase, C-terminal domain ND012_15045 PF00108 Thiolase, N-terminal domain ND012_15050 PF00970 Oxidoreductase FAD-binding domain ND012_15050 PF00175 Oxidoreductase NAD-binding domain ND012_15055 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ND012_15065 PF02357 Transcription termination factor nusG ND012_15070 PF00490 Delta-aminolevulinic acid dehydratase ND012_15075 PF01026 TatD related DNase ND012_15080 PF00902 Sec-independent protein translocase protein (TatC) ND012_15090 PF02416 mttA/Hcf106 family ND012_15095 PF03109 ABC1 family ND012_15100 PF02036 SCP-2 sterol transfer family ND012_15105 PF01209 ubiE/COQ5 methyltransferase family ND012_15110 PF02646 RmuC family ND012_15115 PF09335 SNARE associated Golgi protein ND012_15120 PF13722 5TM C-terminal transporter carbon starvation CstA ND012_15120 PF02554 Carbon starvation protein CstA ND012_15130 PF01048 Phosphorylase superfamily ND012_15135 PF01738 Dienelactone hydrolase family ND012_15140 PF01717 Cobalamin-independent synthase, Catalytic domain ND012_15140 PF08267 Cobalamin-independent synthase, N-terminal domain ND012_15145 PF03466 LysR substrate binding domain ND012_15145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_15150 PF00892 EamA-like transporter family ND012_15160 PF03009 Glycerophosphoryl diester phosphodiesterase family ND012_15165 PF00005 ABC transporter ND012_15165 PF17912 MalK OB fold domain ND012_15170 PF00528 Binding-protein-dependent transport system inner membrane component ND012_15175 PF00528 Binding-protein-dependent transport system inner membrane component ND012_15180 PF13416 Bacterial extracellular solute-binding protein ND012_15225 PF00005 ABC transporter ND012_15230 PF00005 ABC transporter ND012_15230 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND012_15235 PF02653 Branched-chain amino acid transport system / permease component ND012_15235 PF11862 Domain of unknown function (DUF3382) ND012_15240 PF02653 Branched-chain amino acid transport system / permease component ND012_15245 PF13458 Periplasmic binding protein ND012_15250 PF12568 Acetyltransferase (GNAT) domain, PanZ ND012_15255 PF02595 Glycerate kinase family ND012_15260 PF02447 GntP family permease ND012_15265 PF05651 Putative sugar diacid recognition ND012_15265 PF17853 GGDEF-like domain ND012_15265 PF13556 PucR C-terminal helix-turn-helix domain ND012_15270 PF00140 Sigma-70 factor, region 1.2 ND012_15270 PF04542 Sigma-70 region 2 ND012_15270 PF04545 Sigma-70, region 4 ND012_15275 PF02687 FtsX-like permease family ND012_15275 PF18075 FtsX extracellular domain ND012_15280 PF00005 ABC transporter ND012_15285 PF02881 SRP54-type protein, helical bundle domain ND012_15285 PF00448 SRP54-type protein, GTPase domain ND012_15285 PF02881 SRP54-type protein, helical bundle domain ND012_15285 PF00448 SRP54-type protein, GTPase domain ND012_15295 PF06611 Protein of unknown function (DUF1145) ND012_15310 PF07947 YhhN family ND012_15315 PF00403 Heavy-metal-associated domain ND012_15320 PF01206 Sulfurtransferase TusA ND012_15325 PF02592 Putative vitamin uptake transporter ND012_15330 PF08786 DcrB ND012_15335 PF13183 4Fe-4S dicluster domain ND012_15335 PF02754 Cysteine-rich domain ND012_15340 PF00890 FAD binding domain ND012_15345 PF04324 BFD-like [2Fe-2S] binding domain ND012_15345 PF01266 FAD dependent oxidoreductase ND012_15355 PF07690 Major Facilitator Superfamily ND012_15360 PF03009 Glycerophosphoryl diester phosphodiesterase family ND012_15370 PF12146 Serine aminopeptidase, S33 ND012_15375 PF01810 LysE type translocator ND012_15380 PF16124 RecQ zinc-binding ND012_15380 PF00271 Helicase conserved C-terminal domain ND012_15380 PF00270 DEAD/DEAH box helicase ND012_15380 PF00570 HRDC domain ND012_15380 PF09382 RQC domain ND012_15385 PF02253 Phospholipase A1 ND012_15390 PF03061 Thioesterase superfamily ND012_15395 PF00892 EamA-like transporter family ND012_15400 PF01544 CorA-like Mg2+ transporter protein ND012_15410 PF09370 Phosphoenolpyruvate hydrolase-like ND012_15425 PF13361 UvrD-like helicase C-terminal domain ND012_15425 PF00580 UvrD/REP helicase N-terminal domain ND012_15430 PF13419 Haloacid dehalogenase-like hydrolase ND012_15435 PF00589 Phage integrase family ND012_15435 PF02899 Phage integrase, N-terminal SAM-like domain ND012_15440 PF04340 Protein of unknown function, DUF484 ND012_15445 PF01678 Diaminopimelate epimerase ND012_15450 PF13627 Prokaryotic lipoprotein-attachment site ND012_15455 PF01491 Frataxin-like domain ND012_15460 PF12633 Adenylate cyclase NT domain ND012_15460 PF01295 Adenylate cyclase, class-I ND012_15465 PF03900 Porphobilinogen deaminase, C-terminal domain ND012_15465 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ND012_15470 PF02602 Uroporphyrinogen-III synthase HemD ND012_15475 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ND012_15480 PF07719 Tetratricopeptide repeat ND012_15480 PF07219 HemY protein N-terminus ND012_15505 PF00324 Amino acid permease ND012_15510 PF03808 Glycosyl transferase WecB/TagA/CpsF family ND012_15515 PF06899 WzyE protein, O-antigen assembly polymerase ND012_15520 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ND012_15525 PF01943 Polysaccharide biosynthesis protein ND012_15530 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND012_15540 PF00483 Nucleotidyl transferase ND012_15545 PF16363 GDP-mannose 4,6 dehydratase ND012_15550 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND012_15550 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND012_15550 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND012_15555 PF02350 UDP-N-acetylglucosamine 2-epimerase ND012_15560 PF02706 Chain length determinant protein ND012_15565 PF00953 Glycosyl transferase family 4 ND012_15570 PF07497 Rho termination factor, RNA-binding domain ND012_15570 PF07498 Rho termination factor, N-terminal domain ND012_15570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND012_15575 PF00085 Thioredoxin ND012_15580 PF00271 Helicase conserved C-terminal domain ND012_15580 PF00270 DEAD/DEAH box helicase ND012_15585 PF02541 Ppx/GppA phosphatase family ND012_15590 PF00580 UvrD/REP helicase N-terminal domain ND012_15590 PF13361 UvrD-like helicase C-terminal domain ND012_15600 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ND012_15600 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ND012_15605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_15605 PF03466 LysR substrate binding domain ND012_15610 PF18416 N-acetylglucosamine binding protein domain 2 ND012_15610 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND012_15615 PF00291 Pyridoxal-phosphate dependent enzyme ND012_15615 PF00585 C-terminal regulatory domain of Threonine dehydratase ND012_15620 PF00920 Dehydratase family ND012_15625 PF01063 Amino-transferase class IV ND012_15635 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND012_15635 PF00205 Thiamine pyrophosphate enzyme, central domain ND012_15635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND012_15640 PF08046 IlvGEDA operon leader peptide ND012_15645 PF13335 Magnesium chelatase, subunit ChlI C-terminal ND012_15645 PF01078 Magnesium chelatase, subunit ChlI ND012_15650 PF04219 Protein of unknown function, DUF ND012_15655 PF03466 LysR substrate binding domain ND012_15655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_15700 PF01177 Asp/Glu/Hydantoin racemase ND012_15705 PF07715 TonB-dependent Receptor Plug Domain ND012_15705 PF00593 TonB dependent receptor ND012_15710 PF05958 tRNA (Uracil-5-)-methyltransferase ND012_15715 PF07226 Protein of unknown function (DUF1422) ND012_15720 PF00440 Bacterial regulatory proteins, tetR family ND012_15725 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_15725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND012_15730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_15730 PF03466 LysR substrate binding domain ND012_15735 PF00462 Glutaredoxin ND012_15735 PF08534 Redoxin ND012_15740 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_15740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND012_15760 PF00529 HlyD membrane-fusion protein of T1SS ND012_15765 PF00664 ABC transporter transmembrane region ND012_15765 PF00005 ABC transporter ND012_15775 PF07715 TonB-dependent Receptor Plug Domain ND012_15775 PF00593 TonB dependent receptor ND012_15780 PF14698 Argininosuccinate lyase C-terminal ND012_15780 PF00206 Lyase ND012_15785 PF00764 Arginosuccinate synthase ND012_15790 PF00696 Amino acid kinase family ND012_15795 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND012_15795 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND012_15800 PF07687 Peptidase dimerisation domain ND012_15800 PF01546 Peptidase family M20/M25/M40 ND012_15805 PF00311 Phosphoenolpyruvate carboxylase ND012_15815 PF02219 Methylenetetrahydrofolate reductase ND012_15825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_15825 PF03466 LysR substrate binding domain ND012_15860 PF03755 YicC-like family, N-terminal region ND012_15860 PF08340 Domain of unknown function (DUF1732) ND012_15865 PF03725 3' exoribonuclease family, domain 2 ND012_15865 PF01138 3' exoribonuclease family, domain 1 ND012_15870 PF00156 Phosphoribosyl transferase domain ND012_15875 PF00440 Bacterial regulatory proteins, tetR family ND012_15880 PF00692 dUTPase ND012_15885 PF02441 Flavoprotein ND012_15885 PF04127 DNA / pantothenate metabolism flavoprotein ND012_15890 PF04002 RadC-like JAB domain ND012_15895 PF00830 Ribosomal L28 family ND012_15900 PF00471 Ribosomal protein L33 ND012_15905 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ND012_15905 PF06827 Zinc finger found in FPG and IleRS ND012_15905 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ND012_15910 PF01467 Cytidylyltransferase-like ND012_15915 PF00535 Glycosyl transferase family 2 ND012_15920 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ND012_15925 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND012_15930 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND012_15935 PF01370 NAD dependent epimerase/dehydratase family ND012_15940 PF00155 Aminotransferase class I and II ND012_15945 PF00107 Zinc-binding dehydrogenase ND012_15945 PF08240 Alcohol dehydrogenase GroES-like domain ND012_15950 PF04748 Divergent polysaccharide deacetylase ND012_15955 PF01551 Peptidase family M23 ND012_15960 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ND012_15960 PF01676 Metalloenzyme superfamily ND012_15965 PF00581 Rhodanese-like domain ND012_15970 PF00462 Glutaredoxin ND012_15975 PF02556 Preprotein translocase subunit SecB ND012_15980 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ND012_15980 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ND012_15985 PF06426 Serine acetyltransferase, N-terminal ND012_15985 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_15990 PF00588 SpoU rRNA Methylase family ND012_15995 PF16527 Two-component sensor protein CpxA, periplasmic domain ND012_15995 PF00672 HAMP domain ND012_15995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_15995 PF00512 His Kinase A (phospho-acceptor) domain ND012_16000 PF00486 Transcriptional regulatory protein, C terminal ND012_16000 PF00072 Response regulator receiver domain ND012_16005 PF07813 LTXXQ motif family protein ND012_16010 PF01545 Cation efflux family ND012_16010 PF16916 Dimerisation domain of Zinc Transporter ND012_16015 PF00365 Phosphofructokinase ND012_16025 PF00121 Triosephosphate isomerase ND012_16030 PF07305 Protein of unknown function (DUF1454) ND012_16035 PF05656 Protein of unknown function (DUF805) ND012_16040 PF00175 Oxidoreductase NAD-binding domain ND012_16040 PF00970 Oxidoreductase FAD-binding domain ND012_16045 PF07690 Major Facilitator Superfamily ND012_16050 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ND012_16055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND012_16055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND012_16060 PF00230 Major intrinsic protein ND012_16065 PF06005 Cell division protein ZapB ND012_16070 PF03737 Aldolase/RraA ND012_16075 PF01040 UbiA prenyltransferase family ND012_16080 PF10431 C-terminal, D2-small domain, of ClpB protein ND012_16080 PF07724 AAA domain (Cdc48 subfamily) ND012_16080 PF00004 ATPase family associated with various cellular activities (AAA) ND012_16085 PF00227 Proteasome subunit ND012_16090 PF05036 Sporulation related domain ND012_16095 PF00356 Bacterial regulatory proteins, lacI family ND012_16100 PF18074 Primosomal protein N C-terminal domain ND012_16100 PF17764 3′ DNA-binding domain (3′BD) ND012_16100 PF00271 Helicase conserved C-terminal domain ND012_16100 PF00270 DEAD/DEAH box helicase ND012_16100 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ND012_16105 PF01197 Ribosomal protein L31 ND012_16110 PF01340 Met Apo-repressor, MetJ ND012_16115 PF01053 Cys/Met metabolism PLP-dependent enzyme ND012_16120 PF00696 Amino acid kinase family ND012_16120 PF00742 Homoserine dehydrogenase ND012_16120 PF03447 Homoserine dehydrogenase, NAD binding domain ND012_16145 PF00990 Diguanylate cyclase, GGDEF domain ND012_16145 PF13426 PAS domain ND012_16145 PF00563 EAL domain ND012_16150 PF00378 Enoyl-CoA hydratase/isomerase ND012_16155 PF07670 Nucleoside recognition ND012_16155 PF07662 Na+ dependent nucleoside transporter C-terminus ND012_16155 PF01773 Na+ dependent nucleoside transporter N-terminus ND012_16170 PF03458 UPF0126 domain ND012_16175 PF03120 NAD-dependent DNA ligase OB-fold domain ND012_16175 PF01653 NAD-dependent DNA ligase adenylation domain ND012_16180 PF00625 Guanylate kinase ND012_16185 PF01192 RNA polymerase Rpb6 ND012_16190 PF02824 TGS domain ND012_16190 PF04607 Region found in RelA / SpoT proteins ND012_16190 PF13291 ACT domain ND012_16195 PF12105 SpoU, rRNA methylase, C-terminal ND012_16195 PF00588 SpoU rRNA Methylase family ND012_16200 PF00270 DEAD/DEAH box helicase ND012_16200 PF00271 Helicase conserved C-terminal domain ND012_16200 PF17191 RecG wedge domain ND012_16205 PF03616 Sodium/glutamate symporter ND012_16210 PF00860 Permease family ND012_16215 PF05170 AsmA family ND012_16220 PF09500 Putative thioesterase (yiiD_Cterm) ND012_16220 PF00583 Acetyltransferase (GNAT) family ND012_16225 PF02580 D-Tyr-tRNA(Tyr) deacylase ND012_16230 PF03631 Virulence factor BrkB ND012_16235 PF13419 Haloacid dehalogenase-like hydrolase ND012_16240 PF03144 Elongation factor Tu domain 2 ND012_16240 PF00009 Elongation factor Tu GTP binding domain ND012_16240 PF00679 Elongation factor G C-terminus ND012_16245 PF03951 Glutamine synthetase, beta-Grasp domain ND012_16245 PF00120 Glutamine synthetase, catalytic domain ND012_16250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_16250 PF00512 His Kinase A (phospho-acceptor) domain ND012_16250 PF00989 PAS fold ND012_16255 PF02954 Bacterial regulatory protein, Fis family ND012_16255 PF00158 Sigma-54 interaction domain ND012_16255 PF00072 Response regulator receiver domain ND012_16260 PF06969 HemN C-terminal domain ND012_16260 PF04055 Radical SAM superfamily ND012_16265 PF04220 Der GTPase activator (YihI) ND012_16270 PF01926 50S ribosome-binding GTPase ND012_16275 PF01612 3'-5' exonuclease ND012_16275 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND012_16275 PF01367 5'-3' exonuclease, C-terminal SAM fold ND012_16275 PF00476 DNA polymerase family A ND012_16280 PF01323 DSBA-like thioredoxin domain ND012_16285 PF01636 Phosphotransferase enzyme family ND012_16290 PF06288 Protein of unknown function (DUF1040) ND012_16295 PF12804 MobA-like NTP transferase domain ND012_16300 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ND012_16325 PF00392 Bacterial regulatory proteins, gntR family ND012_16325 PF07729 FCD domain ND012_16330 PF00356 Bacterial regulatory proteins, lacI family ND012_16335 PF00294 pfkB family carbohydrate kinase ND012_16340 PF13407 Periplasmic binding protein domain ND012_16345 PF02653 Branched-chain amino acid transport system / permease component ND012_16350 PF00005 ABC transporter ND012_16355 PF05025 RbsD / FucU transport protein family ND012_16360 PF02705 K+ potassium transporter ND012_16365 PF17868 AAA lid domain ND012_16365 PF12592 Protein of unknown function (DUF3763) ND012_16365 PF07728 AAA domain (dynein-related subfamily) ND012_16370 PF05762 VWA domain containing CoxE-like protein ND012_16380 PF03590 Aspartate-ammonia ligase ND012_16385 PF01037 Lrp/AsnC ligand binding domain ND012_16390 PF00258 Flavodoxin ND012_16395 PF01134 Glucose inhibited division protein A ND012_16395 PF13932 GidA associated domain ND012_16400 PF02527 rRNA small subunit methyltransferase G ND012_16405 PF03899 ATP synthase I chain ND012_16410 PF00119 ATP synthase A chain ND012_16415 PF00137 ATP synthase subunit C ND012_16420 PF00430 ATP synthase B/B' CF(0) ND012_16425 PF00213 ATP synthase delta (OSCP) subunit ND012_16430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND012_16430 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND012_16430 PF00306 ATP synthase alpha/beta chain, C terminal domain ND012_16435 PF00231 ATP synthase ND012_16440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND012_16440 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND012_16445 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ND012_16445 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ND012_16450 PF12804 MobA-like NTP transferase domain ND012_16450 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_16455 PF01380 SIS domain ND012_16460 PF12849 PBP superfamily domain ND012_16465 PF00528 Binding-protein-dependent transport system inner membrane component ND012_16470 PF00528 Binding-protein-dependent transport system inner membrane component ND012_16475 PF00005 ABC transporter ND012_16480 PF01895 PhoU domain ND012_16485 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_16490 PF00528 Binding-protein-dependent transport system inner membrane component ND012_16500 PF00860 Permease family ND012_16505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_16505 PF02203 Tar ligand binding domain homologue ND012_16505 PF00672 HAMP domain ND012_16515 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_16515 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_16520 PF00577 Outer membrane usher protein ND012_16520 PF13953 PapC C-terminal domain ND012_16520 PF13954 PapC N-terminal domain ND012_16530 PF01926 50S ribosome-binding GTPase ND012_16530 PF12631 MnmE helical domain ND012_16530 PF10396 GTP-binding protein TrmE N-terminus ND012_16535 PF02096 60Kd inner membrane protein ND012_16535 PF14849 YidC periplasmic domain ND012_16540 PF01809 Putative membrane protein insertion efficiency factor ND012_16545 PF00825 Ribonuclease P ND012_16550 PF00468 Ribosomal protein L34