locus-tag class description ND440_00005 PF00308 Bacterial dnaA protein ND440_00005 PF08299 Bacterial dnaA protein helix-turn-helix ND440_00005 PF11638 DnaA N-terminal domain ND440_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ND440_00010 PF02767 DNA polymerase III beta subunit, central domain ND440_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ND440_00015 PF02463 RecF/RecN/SMC N terminal domain ND440_00020 PF00204 DNA gyrase B ND440_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ND440_00020 PF18053 DNA gyrase B subunit insert domain ND440_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_00020 PF01751 Toprim domain ND440_00030 PF12566 Protein of unknown function (DUF3748) ND440_00030 PF07676 WD40-like Beta Propeller Repeat ND440_00035 PF07119 Protein of unknown function (DUF1375) ND440_00040 PF00011 Hsp20/alpha crystallin family ND440_00045 PF00011 Hsp20/alpha crystallin family ND440_00050 PF06826 Predicted Permease Membrane Region ND440_00050 PF02080 TrkA-C domain ND440_00055 PF00155 Aminotransferase class I and II ND440_00060 PF13488 Glycine zipper ND440_00060 PF00691 OmpA family ND440_00080 PF03352 Methyladenine glycosylase ND440_00090 PF02091 Glycyl-tRNA synthetase alpha subunit ND440_00095 PF05746 DALR anticodon binding domain ND440_00095 PF02092 Glycyl-tRNA synthetase beta subunit ND440_00100 PF11254 Protein of unknown function (DUF3053) ND440_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND440_00130 PF02378 Phosphotransferase system, EIIC ND440_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND440_00135 PF01232 Mannitol dehydrogenase Rossmann domain ND440_00135 PF08125 Mannitol dehydrogenase C-terminal domain ND440_00140 PF05068 Mannitol repressor ND440_00145 PF10928 Protein of unknown function (DUF2810) ND440_00150 PF03475 3-alpha domain ND440_00150 PF03473 MOSC domain ND440_00155 PF00672 HAMP domain ND440_00155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND440_00155 PF02203 Tar ligand binding domain homologue ND440_00160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND440_00160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND440_00165 PF02634 FdhD/NarQ family ND440_00175 PF13247 4Fe-4S dicluster domain ND440_00175 PF09163 Formate dehydrogenase N, transmembrane ND440_00180 PF01292 Prokaryotic cytochrome b561 ND440_00185 PF04216 Protein involved in formate dehydrogenase formation ND440_00190 PF12390 Selenocysteine synthase N terminal ND440_00190 PF03841 L-seryl-tRNA selenium transferase ND440_00195 PF09107 Elongation factor SelB, winged helix ND440_00195 PF09106 Elongation factor SelB, winged helix ND440_00195 PF03144 Elongation factor Tu domain 2 ND440_00195 PF00009 Elongation factor Tu GTP binding domain ND440_00200 PF01427 D-ala-D-ala dipeptidase ND440_00205 PF07690 Major Facilitator Superfamily ND440_00210 PF01757 Acyltransferase family ND440_00220 PF14659 Phage integrase, N-terminal SAM-like domain ND440_00220 PF13356 Arm DNA-binding domain ND440_00220 PF00589 Phage integrase family ND440_00255 PF01175 Urocanase Rossmann-like domain ND440_00255 PF17392 Urocanase C-terminal domain ND440_00255 PF17391 Urocanase N-terminal domain ND440_00260 PF00221 Aromatic amino acid lyase ND440_00265 PF00324 Amino acid permease ND440_00275 PF12146 Serine aminopeptidase, S33 ND440_00280 PF00884 Sulfatase ND440_00280 PF08019 Phosphoethanolamine transferase EptA/EptB ND440_00285 PF00072 Response regulator receiver domain ND440_00285 PF00196 Bacterial regulatory proteins, luxR family ND440_00290 PF07730 Histidine kinase ND440_00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_00290 PF05231 MASE1 ND440_00295 PF07690 Major Facilitator Superfamily ND440_00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND440_00310 PF00528 Binding-protein-dependent transport system inner membrane component ND440_00315 PF00528 Binding-protein-dependent transport system inner membrane component ND440_00315 PF12911 N-terminal TM domain of oligopeptide transport permease C ND440_00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND440_00320 PF00005 ABC transporter ND440_00325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND440_00325 PF00005 ABC transporter ND440_00330 PF11658 Cellulose biosynthesis protein BcsG ND440_00335 PF11120 Cellulose biosynthesis protein BcsF ND440_00340 PF10995 Cellulose biosynthesis GIL ND440_00350 PF06564 Cellulose biosynthesis protein BcsQ ND440_00355 PF03552 Cellulose synthase ND440_00355 PF00535 Glycosyl transferase family 2 ND440_00355 PF07238 PilZ domain ND440_00360 PF03170 Bacterial cellulose synthase subunit ND440_00365 PF01270 Glycosyl hydrolases family 8 ND440_00370 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ND440_00375 PF00672 HAMP domain ND440_00375 PF00990 Diguanylate cyclase, GGDEF domain ND440_00375 PF17154 Gammaproteobacterial periplasmic sensor domain ND440_00375 PF00563 EAL domain ND440_00380 PF00375 Sodium:dicarboxylate symporter family ND440_00385 PF05193 Peptidase M16 inactive domain ND440_00385 PF00675 Insulinase (Peptidase family M16) ND440_00390 PF00294 pfkB family carbohydrate kinase ND440_00395 PF01361 Tautomerase enzyme ND440_00400 PF00563 EAL domain ND440_00405 PF02611 CDP-diacylglycerol pyrophosphatase ND440_00410 PF03631 Virulence factor BrkB ND440_00415 PF03466 LysR substrate binding domain ND440_00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_00420 PF00375 Sodium:dicarboxylate symporter family ND440_00425 PF01053 Cys/Met metabolism PLP-dependent enzyme ND440_00465 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND440_00465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND440_00470 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ND440_00475 PF01432 Peptidase family M3 ND440_00480 PF04445 Putative SAM-dependent methyltransferase ND440_00485 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ND440_00485 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ND440_00490 PF00582 Universal stress protein family ND440_00495 PF10625 Universal stress protein B (UspB) ND440_00500 PF01384 Phosphate transporter family ND440_00510 PF01810 LysE type translocator ND440_00515 PF00583 Acetyltransferase (GNAT) family ND440_00520 PF17954 Quercetinase C-terminal cupin domain ND440_00520 PF02678 Pirin ND440_00525 PF00356 Bacterial regulatory proteins, lacI family ND440_00525 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND440_00530 PF02447 GntP family permease ND440_00535 PF01202 Shikimate kinase ND440_00540 PF01914 MarC family integral membrane protein ND440_00545 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND440_00545 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND440_00550 PF07694 5TMR of 5TMR-LYT ND440_00550 PF06580 Histidine kinase ND440_00555 PF00128 Alpha amylase, catalytic domain ND440_00555 PF02806 Alpha amylase, C-terminal all-beta domain ND440_00555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND440_00560 PF18390 Glycogen debranching enzyme C-terminal domain ND440_00560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND440_00560 PF00128 Alpha amylase, catalytic domain ND440_00565 PF00483 Nucleotidyl transferase ND440_00570 PF00534 Glycosyl transferases group 1 ND440_00570 PF08323 Starch synthase catalytic domain ND440_00575 PF00343 Carbohydrate phosphorylase ND440_00580 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ND440_00580 PF01266 FAD dependent oxidoreductase ND440_00585 PF08220 DeoR-like helix-turn-helix domain ND440_00585 PF00455 DeoR C terminal sensor domain ND440_00590 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ND440_00590 PF01694 Rhomboid family ND440_00595 PF00581 Rhodanese-like domain ND440_00600 PF17874 MalT-like TPR region ND440_00600 PF00196 Bacterial regulatory proteins, luxR family ND440_00605 PF00343 Carbohydrate phosphorylase ND440_00610 PF02446 4-alpha-glucanotransferase ND440_00615 PF01106 NifU-like domain ND440_00615 PF01521 Iron-sulphur cluster biosynthesis ND440_00620 PF00156 Phosphoribosyl transferase domain ND440_00625 PF00561 alpha/beta hydrolase fold ND440_00635 PF09012 FeoC like transcriptional regulator ND440_00640 PF07664 Ferrous iron transport protein B C terminus ND440_00640 PF07670 Nucleoside recognition ND440_00640 PF17910 FeoB cytosolic helical domain ND440_00640 PF02421 Ferrous iron transport protein B ND440_00645 PF04023 FeoA domain ND440_00650 PF16921 Tex protein YqgF-like domain ND440_00650 PF09371 Tex-like protein N-terminal domain ND440_00650 PF00575 S1 RNA binding domain ND440_00650 PF17674 HHH domain ND440_00675 PF03449 Transcription elongation factor, N-terminal ND440_00675 PF01272 Transcription elongation factor, GreA/GreB, C-term ND440_00680 PF00072 Response regulator receiver domain ND440_00680 PF00486 Transcriptional regulatory protein, C terminal ND440_00685 PF00672 HAMP domain ND440_00685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_00685 PF00512 His Kinase A (phospho-acceptor) domain ND440_00690 PF01293 Phosphoenolpyruvate carboxykinase ND440_00695 PF01430 Hsp33 protein ND440_00700 PF01479 S4 domain ND440_00705 PF13419 Haloacid dehalogenase-like hydrolase ND440_00710 PF07095 Intracellular growth attenuator protein IgaA ND440_00715 PF00293 NUDIX domain ND440_00720 PF00905 Penicillin binding protein transpeptidase domain ND440_00720 PF00912 Transglycosylase ND440_00720 PF17092 Penicillin-binding protein OB-like domain ND440_00745 PF03958 Bacterial type II/III secretion system short domain ND440_00745 PF00263 Bacterial type II and III secretion system protein ND440_00750 PF01202 Shikimate kinase ND440_00755 PF01761 3-dehydroquinate synthase ND440_00760 PF05036 Sporulation related domain ND440_00765 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND440_00770 PF00834 Ribulose-phosphate 3 epimerase family ND440_00775 PF13419 Haloacid dehalogenase-like hydrolase ND440_00780 PF00579 tRNA synthetases class I (W and Y) ND440_00785 PF10414 Sirohaem synthase dimerisation region ND440_00785 PF14824 Sirohaem biosynthesis protein central ND440_00785 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND440_00790 PF01226 Formate/nitrite transporter ND440_00795 PF13806 Rieske-like [2Fe-2S] domain ND440_00800 PF04324 BFD-like [2Fe-2S] binding domain ND440_00800 PF18267 Rubredoxin NAD+ reductase C-terminal domain ND440_00800 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND440_00800 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND440_00800 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND440_00805 PF07969 Amidohydrolase family ND440_00810 PF07690 Major Facilitator Superfamily ND440_00825 PF00356 Bacterial regulatory proteins, lacI family ND440_00830 PF11975 Family 4 glycosyl hydrolase C-terminal domain ND440_00830 PF02056 Family 4 glycosyl hydrolase ND440_00835 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND440_00840 PF00117 Glutamine amidotransferase class-I ND440_00845 PF00202 Aminotransferase class-III ND440_00850 PF12805 FUSC-like inner membrane protein yccS ND440_00855 PF13545 Crp-like helix-turn-helix domain ND440_00855 PF00027 Cyclic nucleotide-binding domain ND440_00880 PF00156 Phosphoribosyl transferase domain ND440_00885 PF00291 Pyridoxal-phosphate dependent enzyme ND440_00890 PF00485 Phosphoribulokinase / Uridine kinase family ND440_00895 PF06794 Uncharacterised protein family (UPF0270) ND440_00900 PF00561 alpha/beta hydrolase fold ND440_00905 PF01810 LysE type translocator ND440_00910 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND440_00915 PF00535 Glycosyl transferase family 2 ND440_00920 PF12848 ABC transporter ND440_00920 PF00005 ABC transporter ND440_00925 PF02525 Flavodoxin-like fold ND440_00930 PF02254 TrkA-N domain ND440_00930 PF00999 Sodium/hydrogen exchanger family ND440_00935 PF09526 Probable metal-binding protein (DUF2387) ND440_00940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND440_00945 PF04102 SlyX ND440_00950 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND440_00950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND440_00955 PF13309 HTH domain ND440_00955 PF08348 YheO-like PAS domain ND440_00960 PF02635 DsrE/DsrF-like family ND440_00965 PF02635 DsrE/DsrF-like family ND440_00970 PF04077 DsrH like protein ND440_00975 PF00164 Ribosomal protein S12/S23 ND440_00980 PF00177 Ribosomal protein S7p/S5e ND440_00985 PF00679 Elongation factor G C-terminus ND440_00985 PF14492 Elongation Factor G, domain II ND440_00985 PF03764 Elongation factor G, domain IV ND440_00985 PF00009 Elongation factor Tu GTP binding domain ND440_00985 PF03144 Elongation factor Tu domain 2 ND440_00990 PF03144 Elongation factor Tu domain 2 ND440_00990 PF03143 Elongation factor Tu C-terminal domain ND440_00990 PF00009 Elongation factor Tu GTP binding domain ND440_00995 PF04324 BFD-like [2Fe-2S] binding domain ND440_01000 PF00210 Ferritin-like domain ND440_01005 PF00338 Ribosomal protein S10p/S20e ND440_01010 PF00297 Ribosomal protein L3 ND440_01015 PF00573 Ribosomal protein L4/L1 family ND440_01020 PF00276 Ribosomal protein L23 ND440_01025 PF03947 Ribosomal Proteins L2, C-terminal domain ND440_01025 PF00181 Ribosomal Proteins L2, RNA binding domain ND440_01030 PF00203 Ribosomal protein S19 ND440_01035 PF00237 Ribosomal protein L22p/L17e ND440_01040 PF00189 Ribosomal protein S3, C-terminal domain ND440_01040 PF07650 KH domain ND440_01045 PF00252 Ribosomal protein L16p/L10e ND440_01050 PF00831 Ribosomal L29 protein ND440_01055 PF00366 Ribosomal protein S17 ND440_01060 PF00238 Ribosomal protein L14p/L23e ND440_01065 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ND440_01065 PF00467 KOW motif ND440_01070 PF00281 Ribosomal protein L5 ND440_01070 PF00673 ribosomal L5P family C-terminus ND440_01075 PF00253 Ribosomal protein S14p/S29e ND440_01080 PF00410 Ribosomal protein S8 ND440_01085 PF00347 Ribosomal protein L6 ND440_01090 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ND440_01095 PF00333 Ribosomal protein S5, N-terminal domain ND440_01095 PF03719 Ribosomal protein S5, C-terminal domain ND440_01100 PF00327 Ribosomal protein L30p/L7e ND440_01105 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ND440_01110 PF00344 SecY translocase ND440_01115 PF00444 Ribosomal protein L36 ND440_01120 PF00416 Ribosomal protein S13/S18 ND440_01125 PF00411 Ribosomal protein S11 ND440_01130 PF00163 Ribosomal protein S4/S9 N-terminal domain ND440_01130 PF01479 S4 domain ND440_01135 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ND440_01135 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ND440_01135 PF01000 RNA polymerase Rpb3/RpoA insert domain ND440_01140 PF01196 Ribosomal protein L17 ND440_01145 PF13411 MerR HTH family regulatory protein ND440_01150 PF03889 Alternative ribosome-rescue factor A ND440_01155 PF01741 Large-conductance mechanosensitive channel, MscL ND440_01160 PF02254 TrkA-N domain ND440_01160 PF02080 TrkA-C domain ND440_01165 PF01029 NusB family ND440_01165 PF01189 16S rRNA methyltransferase RsmB/F ND440_01170 PF00551 Formyl transferase ND440_01170 PF02911 Formyl transferase, C-terminal domain ND440_01175 PF01327 Polypeptide deformylase ND440_01180 PF02481 DNA recombination-mediator protein A ND440_01180 PF17782 DprA winged helix domain ND440_01185 PF04361 Protein of unknown function (DUF494) ND440_01190 PF01396 Topoisomerase DNA binding C4 zinc finger ND440_01195 PF01300 Telomere recombination ND440_01200 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ND440_01200 PF08501 Shikimate dehydrogenase substrate binding domain ND440_01200 PF01488 Shikimate / quinate 5-dehydrogenase ND440_01205 PF00132 Bacterial transferase hexapeptide (six repeats) ND440_01230 PF01565 FAD binding domain ND440_01230 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ND440_01235 PF02237 Biotin protein ligase C terminal domain ND440_01235 PF03099 Biotin/lipoate A/B protein ligase family ND440_01235 PF08279 HTH domain ND440_01240 PF00485 Phosphoribulokinase / Uridine kinase family ND440_01265 PF00009 Elongation factor Tu GTP binding domain ND440_01265 PF03144 Elongation factor Tu domain 2 ND440_01265 PF03143 Elongation factor Tu C-terminal domain ND440_01270 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ND440_01275 PF02357 Transcription termination factor nusG ND440_01275 PF00467 KOW motif ND440_01280 PF00298 Ribosomal protein L11, RNA binding domain ND440_01280 PF03946 Ribosomal protein L11, N-terminal domain ND440_01285 PF00687 Ribosomal protein L1p/L10e family ND440_01290 PF00466 Ribosomal protein L10 ND440_01295 PF16320 Ribosomal protein L7/L12 dimerisation domain ND440_01295 PF00542 Ribosomal protein L7/L12 C-terminal domain ND440_01300 PF04560 RNA polymerase Rpb2, domain 7 ND440_01300 PF00562 RNA polymerase Rpb2, domain 6 ND440_01300 PF10385 RNA polymerase beta subunit external 1 domain ND440_01300 PF04561 RNA polymerase Rpb2, domain 2 ND440_01300 PF04563 RNA polymerase beta subunit ND440_01300 PF04565 RNA polymerase Rpb2, domain 3 ND440_01305 PF04997 RNA polymerase Rpb1, domain 1 ND440_01305 PF04983 RNA polymerase Rpb1, domain 3 ND440_01305 PF05000 RNA polymerase Rpb1, domain 4 ND440_01305 PF04998 RNA polymerase Rpb1, domain 5 ND440_01305 PF00623 RNA polymerase Rpb1, domain 2 ND440_01310 PF06968 Biotin and Thiamin Synthesis associated domain ND440_01310 PF04055 Radical SAM superfamily ND440_01315 PF05690 Thiazole biosynthesis protein ThiG ND440_01320 PF02597 ThiS family ND440_01325 PF00899 ThiF family ND440_01330 PF02581 Thiamine monophosphate synthase ND440_01335 PF13667 ThiC-associated domain ND440_01335 PF01964 Radical SAM ThiC family ND440_01340 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ND440_01345 PF00293 NUDIX domain ND440_01345 PF09297 NADH pyrophosphatase zinc ribbon domain ND440_01350 PF01208 Uroporphyrinogen decarboxylase (URO-D) ND440_01355 PF04493 Endonuclease V ND440_01360 PF04222 Protein of unknown function (DUF416) ND440_01365 PF00216 Bacterial DNA-binding protein ND440_01370 PF07356 Protein of unknown function (DUF1481) ND440_01375 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ND440_01375 PF02843 Phosphoribosylglycinamide synthetase, C domain ND440_01375 PF02844 Phosphoribosylglycinamide synthetase, N domain ND440_01380 PF02142 MGS-like domain ND440_01380 PF01808 AICARFT/IMPCHase bienzyme ND440_01415 PF04204 Homoserine O-succinyltransferase ND440_01420 PF01274 Malate synthase ND440_01425 PF00463 Isocitrate lyase family ND440_01430 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ND440_01435 PF01614 Bacterial transcriptional regulator ND440_01435 PF09339 IclR helix-turn-helix domain ND440_01440 PF02965 Vitamin B12 dependent methionine synthase, activation domain ND440_01440 PF00809 Pterin binding enzyme ND440_01440 PF02607 B12 binding domain ND440_01440 PF02310 B12 binding domain ND440_01440 PF02574 Homocysteine S-methyltransferase ND440_01455 PF03466 LysR substrate binding domain ND440_01455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_01535 PF16450 Proteasomal ATPase OB C-terminal domain ND440_01535 PF00004 ATPase family associated with various cellular activities (AAA) ND440_01535 PF17758 Proteasomal ATPase OB N-terminal domain ND440_01545 PF04488 Glycosyltransferase sugar-binding region containing DXD motif ND440_01550 PF13332 Hemagglutinin repeat ND440_01550 PF05860 haemagglutination activity domain ND440_01555 PF08479 POTRA domain, ShlB-type ND440_01555 PF17287 POTRA domain ND440_01555 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND440_01560 PF00696 Amino acid kinase family ND440_01560 PF01842 ACT domain ND440_01565 PF00342 Phosphoglucose isomerase ND440_01570 PF06146 Phosphate-starvation-inducible E ND440_01575 PF00528 Binding-protein-dependent transport system inner membrane component ND440_01580 PF14785 Maltose transport system permease protein MalF P2 domain ND440_01580 PF00528 Binding-protein-dependent transport system inner membrane component ND440_01585 PF01547 Bacterial extracellular solute-binding protein ND440_01595 PF17912 MalK OB fold domain ND440_01595 PF00005 ABC transporter ND440_01600 PF02264 LamB porin ND440_01605 PF07148 Maltose operon periplasmic protein precursor (MalM) ND440_01610 PF04345 Chorismate lyase ND440_01615 PF01040 UbiA prenyltransferase family ND440_01620 PF01553 Acyltransferase ND440_01625 PF01219 Prokaryotic diacylglycerol kinase ND440_01630 PF01726 LexA DNA binding domain ND440_01630 PF00717 Peptidase S24-like ND440_01635 PF01475 Ferric uptake regulator family ND440_01640 PF01207 Dihydrouridine synthase (Dus) ND440_01645 PF09583 Phage shock protein G (Phageshock_PspG) ND440_01650 PF00107 Zinc-binding dehydrogenase ND440_01650 PF08240 Alcohol dehydrogenase GroES-like domain ND440_01655 PF00772 DnaB-like helicase N terminal domain ND440_01655 PF03796 DnaB-like helicase C terminal domain ND440_01660 PF01168 Alanine racemase, N-terminal domain ND440_01660 PF00842 Alanine racemase, C-terminal domain ND440_01665 PF00155 Aminotransferase class I and II ND440_01670 PF04237 YjbR ND440_01675 PF00005 ABC transporter ND440_01675 PF17755 UvrA DNA-binding domain ND440_01675 PF17760 UvrA interaction domain ND440_01680 PF00436 Single-strand binding protein family ND440_01690 PF00860 Permease family ND440_01695 PF00999 Sodium/hydrogen exchanger family ND440_01700 PF03466 LysR substrate binding domain ND440_01700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_01705 PF03788 LrgA family ND440_01710 PF04172 LrgB-like family ND440_01715 PF00484 Carbonic anhydrase ND440_01720 PF03279 Bacterial lipid A biosynthesis acyltransferase ND440_01730 PF02954 Bacterial regulatory protein, Fis family ND440_01735 PF01207 Dihydrouridine synthase (Dus) ND440_01745 PF00474 Sodium:solute symporter family ND440_01750 PF06196 Protein of unknown function (DUF997) ND440_01755 PF00289 Biotin carboxylase, N-terminal domain ND440_01755 PF02785 Biotin carboxylase C-terminal domain ND440_01755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND440_01760 PF00364 Biotin-requiring enzyme ND440_01765 PF01220 Dehydroquinase class II ND440_01770 PF01794 Ferric reductase like transmembrane component ND440_01775 PF00174 Oxidoreductase molybdopterin binding domain ND440_01780 PF08240 Alcohol dehydrogenase GroES-like domain ND440_01780 PF00107 Zinc-binding dehydrogenase ND440_01785 PF00990 Diguanylate cyclase, GGDEF domain ND440_01785 PF00563 EAL domain ND440_01785 PF17157 Gammaproteobacterial periplasmic sensor domain ND440_01795 PF04085 rod shape-determining protein MreC ND440_01800 PF04093 rod shape-determining protein MreD ND440_01805 PF02545 Maf-like protein ND440_01810 PF00575 S1 RNA binding domain ND440_01810 PF10150 Ribonuclease E/G family ND440_01815 PF13116 Protein of unknown function ND440_01815 PF13502 AsmA-like C-terminal region ND440_01820 PF00795 Carbon-nitrogen hydrolase ND440_01825 PF01523 Putative modulator of DNA gyrase ND440_01830 PF03466 LysR substrate binding domain ND440_01830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_01835 PF07869 Protein of unknown function (DUF1656) ND440_01840 PF13533 Biotin-lipoyl like ND440_01845 PF04632 Fusaric acid resistance protein family ND440_01850 PF00171 Aldehyde dehydrogenase family ND440_01855 PF00545 ribonuclease ND440_01860 PF01337 Barstar (barnase inhibitor) ND440_01865 PF04751 Protein of unknown function (DUF615) ND440_01870 PF01523 Putative modulator of DNA gyrase ND440_01875 PF07361 Cytochrome b562 ND440_01880 PF01272 Transcription elongation factor, GreA/GreB, C-term ND440_01880 PF14760 Rnk N-terminus ND440_01890 PF00689 Cation transporting ATPase, C-terminus ND440_01890 PF00690 Cation transporter/ATPase, N-terminus ND440_01895 PF00356 Bacterial regulatory proteins, lacI family ND440_01900 PF00367 phosphotransferase system, EIIB ND440_01900 PF02378 Phosphotransferase system, EIIC ND440_01905 PF11941 Domain of unknown function (DUF3459) ND440_01905 PF00128 Alpha amylase, catalytic domain ND440_01910 PF01042 Endoribonuclease L-PSP ND440_01915 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ND440_01915 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ND440_01920 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND440_01920 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND440_01925 PF00381 PTS HPr component phosphorylation site ND440_01930 PF03668 P-loop ATPase protein family ND440_01935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND440_01940 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND440_01945 PF00309 Sigma-54 factor, Activator interacting domain (AID) ND440_01945 PF04552 Sigma-54, DNA binding domain ND440_01945 PF04963 Sigma-54 factor, core binding domain ND440_01950 PF00005 ABC transporter ND440_01950 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND440_01955 PF03968 OstA-like protein ND440_01960 PF06835 Lipopolysaccharide-assembly, LptC-related ND440_01970 PF00571 CBS domain ND440_01970 PF01380 SIS domain ND440_01975 PF01699 Sodium/calcium exchanger protein ND440_01980 PF00005 ABC transporter ND440_01985 PF02405 Permease MlaE ND440_01990 PF02470 MlaD protein ND440_01995 PF05494 MlaC protein ND440_02000 PF13466 STAS domain ND440_02005 PF01722 BolA-like protein ND440_02010 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND440_02015 PF13180 PDZ domain ND440_02020 PF00595 PDZ domain ND440_02020 PF13180 PDZ domain ND440_02025 PF06295 Protein of unknown function (DUF1043) ND440_02030 PF03969 AFG1-like ATPase ND440_02035 PF00572 Ribosomal protein L13 ND440_02040 PF00380 Ribosomal protein S9/S16 ND440_02045 PF02798 Glutathione S-transferase, N-terminal domain ND440_02045 PF00043 Glutathione S-transferase, C-terminal domain ND440_02050 PF04386 Stringent starvation protein B ND440_02060 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ND440_02060 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND440_02065 PF00310 Glutamine amidotransferases class-II ND440_02065 PF04898 Glutamate synthase central domain ND440_02065 PF01645 Conserved region in glutamate synthase ND440_02065 PF01493 GXGXG motif ND440_02070 PF04055 Radical SAM superfamily ND440_02070 PF16199 Radical_SAM C-terminal domain ND440_02095 PF04972 BON domain ND440_02100 PF13580 SIS domain ND440_02130 PF17954 Quercetinase C-terminal cupin domain ND440_02130 PF02678 Pirin ND440_02135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_02135 PF03466 LysR substrate binding domain ND440_02140 PF07681 DoxX ND440_02145 PF13997 YqjK-like protein ND440_02150 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ND440_02155 PF05957 Bacterial protein of unknown function (DUF883) ND440_02165 PF13721 SecD export protein N-terminal TM region ND440_02170 PF09335 SNARE associated Golgi protein ND440_02180 PF07729 FCD domain ND440_02180 PF00392 Bacterial regulatory proteins, gntR family ND440_02185 PF07690 Major Facilitator Superfamily ND440_02190 PF02614 Glucuronate isomerase ND440_02195 PF01232 Mannitol dehydrogenase Rossmann domain ND440_02195 PF08125 Mannitol dehydrogenase C-terminal domain ND440_02200 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ND440_02200 PF08666 SAF domain ND440_02205 PF10688 Bacterial inner membrane protein ND440_02210 PF00375 Sodium:dicarboxylate symporter family ND440_02215 PF03741 Integral membrane protein TerC family ND440_02220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND440_02225 PF01863 Protein of unknown function DUF45 ND440_02235 PF05175 Methyltransferase small domain ND440_02240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND440_02240 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND440_02245 PF08479 POTRA domain, ShlB-type ND440_02245 PF17287 POTRA domain ND440_02245 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND440_02250 PF13018 Extended Signal Peptide of Type V secretion system ND440_02250 PF05860 haemagglutination activity domain ND440_02250 PF04829 Pre-toxin domain with VENN motif ND440_02250 PF13332 Hemagglutinin repeat ND440_02275 PF00535 Glycosyl transferase family 2 ND440_02280 PF08241 Methyltransferase domain ND440_02305 PF00106 short chain dehydrogenase ND440_02330 PF02661 Fic/DOC family ND440_02390 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A ND440_02395 PF06755 CbtA_toxin of type IV toxin-antitoxin system ND440_02410 PF04545 Sigma-70, region 4 ND440_02410 PF04542 Sigma-70 region 2 ND440_02410 PF00140 Sigma-70 factor, region 1.2 ND440_02410 PF03979 Sigma-70 factor, region 1.1 ND440_02410 PF04546 Sigma-70, non-essential region ND440_02410 PF04539 Sigma-70 region 3 ND440_02415 PF10410 DnaB-helicase binding domain of primase ND440_02415 PF08278 DNA primase DnaG DnaB-binding ND440_02415 PF08275 DNA primase catalytic core, N-terminal domain ND440_02415 PF01807 CHC2 zinc finger ND440_02420 PF01165 Ribosomal protein S21 ND440_02425 PF00814 Glycoprotease family ND440_02430 PF02660 Glycerol-3-phosphate acyltransferase ND440_02435 PF02152 Dihydroneopterin aldolase ND440_02440 PF02673 Bacitracin resistance protein BacA ND440_02445 PF01966 HD domain ND440_02445 PF12627 Probable RNA and SrmB- binding site of polymerase A ND440_02445 PF01743 Poly A polymerase head domain ND440_02450 PF08239 Bacterial SH3 domain ND440_02455 PF01928 CYTH domain ND440_02460 PF08335 GlnD PII-uridylyltransferase ND440_02460 PF03710 Glutamate-ammonia ligase adenylyltransferase ND440_02465 PF01467 Cytidylyltransferase-like ND440_02465 PF00294 pfkB family carbohydrate kinase ND440_02470 PF04380 Membrane fusogenic activity ND440_02475 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ND440_02480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ND440_02485 PF03738 Glutathionylspermidine synthase preATP-grasp ND440_02490 PF06693 Protein of unknown function (DUF1190) ND440_02495 PF02321 Outer membrane efflux protein ND440_02500 PF00293 NUDIX domain ND440_02505 PF06853 Protein of unknown function (DUF1249) ND440_02510 PF00149 Calcineurin-like phosphoesterase ND440_02515 PF05728 Uncharacterised protein family (UPF0227) ND440_02520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_02520 PF00986 DNA gyrase B subunit, carboxyl terminus ND440_02520 PF00204 DNA gyrase B ND440_02520 PF01751 Toprim domain ND440_02525 PF03466 LysR substrate binding domain ND440_02525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_02530 PF02525 Flavodoxin-like fold ND440_02535 PF03989 DNA gyrase C-terminal domain, beta-propeller ND440_02535 PF00521 DNA gyrase/topoisomerase IV, subunit A ND440_02540 PF01553 Acyltransferase ND440_02545 PF07732 Multicopper oxidase ND440_02545 PF07731 Multicopper oxidase ND440_02550 PF08497 Radical SAM N-terminal ND440_02550 PF11842 Domain of unknown function (DUF3362) ND440_02550 PF04055 Radical SAM superfamily ND440_02555 PF00248 Aldo/keto reductase family ND440_02560 PF00465 Iron-containing alcohol dehydrogenase ND440_02565 PF06719 AraC-type transcriptional regulator N-terminus ND440_02565 PF12833 Helix-turn-helix domain ND440_02570 PF09335 SNARE associated Golgi protein ND440_02575 PF01053 Cys/Met metabolism PLP-dependent enzyme ND440_02580 PF01618 MotA/TolQ/ExbB proton channel family ND440_02585 PF02472 Biopolymer transport protein ExbD/TolR ND440_02635 PF04972 BON domain ND440_02635 PF00263 Bacterial type II and III secretion system protein ND440_02635 PF13629 Pilus formation protein N terminal region ND440_02660 PF08501 Shikimate dehydrogenase substrate binding domain ND440_02665 PF07715 TonB-dependent Receptor Plug Domain ND440_02665 PF00593 TonB dependent receptor ND440_02670 PF00756 Putative esterase ND440_02670 PF11806 Domain of unknown function (DUF3327) ND440_02675 PF03621 MbtH-like protein ND440_02680 PF00975 Thioesterase domain ND440_02680 PF00550 Phosphopantetheine attachment site ND440_02680 PF00668 Condensation domain ND440_02680 PF13193 AMP-binding enzyme C-terminal domain ND440_02680 PF00501 AMP-binding enzyme ND440_02690 PF00005 ABC transporter ND440_02695 PF01032 FecCD transport family ND440_02700 PF01032 FecCD transport family ND440_02705 PF05977 Transmembrane secretion effector ND440_02710 PF01497 Periplasmic binding protein ND440_02715 PF00425 chorismate binding enzyme ND440_02720 PF00501 AMP-binding enzyme ND440_02720 PF13193 AMP-binding enzyme C-terminal domain ND440_02725 PF00857 Isochorismatase family ND440_02725 PF00550 Phosphopantetheine attachment site ND440_02735 PF00975 Thioesterase domain ND440_02735 PF13193 AMP-binding enzyme C-terminal domain ND440_02735 PF00668 Condensation domain ND440_02735 PF00501 AMP-binding enzyme ND440_02735 PF00550 Phosphopantetheine attachment site ND440_02740 PF00291 Pyridoxal-phosphate dependent enzyme ND440_02745 PF01490 Transmembrane amino acid transporter protein ND440_02750 PF00871 Acetokinase family ND440_02755 PF01228 Glycine radical ND440_02755 PF02901 Pyruvate formate lyase-like ND440_02760 PF00294 pfkB family carbohydrate kinase ND440_02795 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ND440_02795 PF01464 Transglycosylase SLT domain ND440_02800 PF04362 Bacterial Fe(2+) trafficking ND440_02805 PF10576 Iron-sulfur binding domain of endonuclease III ND440_02805 PF00633 Helix-hairpin-helix motif ND440_02805 PF00730 HhH-GPD superfamily base excision DNA repair protein ND440_02805 PF14815 NUDIX domain ND440_02810 PF02390 Putative methyltransferase ND440_02815 PF04320 Protein with unknown function (DUF469) ND440_02820 PF04960 Glutaminase ND440_02825 PF11101 Protein of unknown function (DUF2884) ND440_02830 PF04055 Radical SAM superfamily ND440_02830 PF06969 HemN C-terminal domain ND440_02835 PF01725 Ham1 family ND440_02840 PF02594 Uncharacterised ACR, YggU family COG1872 ND440_02845 PF02325 YGGT family ND440_02850 PF03807 NADP oxidoreductase coenzyme F420-dependent ND440_02850 PF14748 Pyrroline-5-carboxylate reductase dimerisation ND440_02855 PF01168 Alanine racemase, N-terminal domain ND440_02860 PF00437 Type II/IV secretion system protein ND440_02865 PF04371 Porphyromonas-type peptidyl-arginine deiminase ND440_02870 PF00795 Carbon-nitrogen hydrolase ND440_02875 PF03652 Holliday junction resolvase ND440_02880 PF02622 Uncharacterized ACR, COG1678 ND440_02885 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ND440_02885 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ND440_02890 PF04452 RNA methyltransferase ND440_02895 PF04231 Endonuclease I ND440_02900 PF10263 SprT-like family ND440_02900 PF17283 SprT-like zinc ribbon domain ND440_02910 PF04143 Sulphur transport ND440_02920 PF02772 S-adenosylmethionine synthetase, central domain ND440_02920 PF00438 S-adenosylmethionine synthetase, N-terminal domain ND440_02920 PF02773 S-adenosylmethionine synthetase, C-terminal domain ND440_02925 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND440_02925 PF17944 Arginine decarboxylase C-terminal helical extension ND440_02925 PF17810 Arginine decarboxylase helical bundle domain ND440_02935 PF00456 Transketolase, thiamine diphosphate binding domain ND440_02935 PF02779 Transketolase, pyrimidine binding domain ND440_02935 PF02780 Transketolase, C-terminal domain ND440_02940 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND440_02940 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND440_02945 PF00162 Phosphoglycerate kinase ND440_02950 PF01116 Fructose-bisphosphate aldolase class-II ND440_02955 PF00924 Mechanosensitive ion channel ND440_02955 PF05552 Conserved TM helix ND440_02960 PF01810 LysE type translocator ND440_02965 PF04402 Protein of unknown function (DUF541) ND440_02970 PF03466 LysR substrate binding domain ND440_02970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_02975 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ND440_02980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND440_02980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND440_02980 PF01842 ACT domain ND440_02985 PF01812 5-formyltetrahydrofolate cyclo-ligase family ND440_02995 PF05164 Cell division protein ZapA ND440_03000 PF03695 Uncharacterised protein family (UPF0149) ND440_03005 PF05195 Aminopeptidase P, N-terminal domain ND440_03005 PF00557 Metallopeptidase family M24 ND440_03010 PF01494 FAD binding domain ND440_03015 PF01494 FAD binding domain ND440_03020 PF08669 Glycine cleavage T-protein C-terminal barrel domain ND440_03020 PF01571 Aminomethyltransferase folate-binding domain ND440_03025 PF01597 Glycine cleavage H-protein ND440_03030 PF02347 Glycine cleavage system P-protein ND440_03040 PF03006 Haemolysin-III related ND440_03045 PF01571 Aminomethyltransferase folate-binding domain ND440_03050 PF03937 Flavinator of succinate dehydrogenase ND440_03055 PF07254 Membrane-bound toxin component of toxin-antitoxin system ND440_03060 PF00258 Flavodoxin ND440_03065 PF00589 Phage integrase family ND440_03065 PF02899 Phage integrase, N-terminal SAM-like domain ND440_03070 PF13098 Thioredoxin-like domain ND440_03070 PF10411 Disulfide bond isomerase protein N-terminus ND440_03075 PF01368 DHH family ND440_03075 PF02272 DHHA1 domain ND440_03075 PF17768 RecJ OB domain ND440_03085 PF00152 tRNA synthetases class II (D, K and N) ND440_03085 PF01336 OB-fold nucleic acid binding domain ND440_03095 PF02405 Permease MlaE ND440_03100 PF00005 ABC transporter ND440_03125 PF00263 Bacterial type II and III secretion system protein ND440_03125 PF03958 Bacterial type II/III secretion system short domain ND440_03130 PF00437 Type II/IV secretion system protein ND440_03135 PF00482 Type II secretion system (T2SS), protein F ND440_03140 PF07963 Prokaryotic N-terminal methylation motif ND440_03140 PF08334 Type II secretion system (T2SS), protein G ND440_03150 PF07963 Prokaryotic N-terminal methylation motif ND440_03150 PF02501 Type II secretion system (T2SS), protein I ND440_03155 PF07963 Prokaryotic N-terminal methylation motif ND440_03155 PF11612 Type II secretion system (T2SS), protein J ND440_03195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_03195 PF03466 LysR substrate binding domain ND440_03200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_03200 PF03466 LysR substrate binding domain ND440_03205 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ND440_03205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND440_03210 PF00356 Bacterial regulatory proteins, lacI family ND440_03215 PF01553 Acyltransferase ND440_03215 PF00501 AMP-binding enzyme ND440_03215 PF13193 AMP-binding enzyme C-terminal domain ND440_03220 PF07690 Major Facilitator Superfamily ND440_03225 PF00248 Aldo/keto reductase family ND440_03230 PF03741 Integral membrane protein TerC family ND440_03235 PF02976 DNA mismatch repair enzyme MutH ND440_03240 PF00293 NUDIX domain ND440_03245 PF05524 PEP-utilising enzyme, N-terminal ND440_03245 PF00391 PEP-utilising enzyme, mobile domain ND440_03245 PF02896 PEP-utilising enzyme, TIM barrel domain ND440_03245 PF01590 GAF domain ND440_03250 PF01790 Prolipoprotein diacylglyceryl transferase ND440_03255 PF00303 Thymidylate synthase ND440_03275 PF07963 Prokaryotic N-terminal methylation motif ND440_03275 PF12528 Type II secretion prepilin peptidase dependent protein C ND440_03280 PF17946 RecC C-terminal domain ND440_03285 PF05193 Peptidase M16 inactive domain ND440_03285 PF00675 Insulinase (Peptidase family M16) ND440_03285 PF16187 Middle or third domain of peptidase_M16 ND440_03290 PF00580 UvrD/REP helicase N-terminal domain ND440_03290 PF13361 UvrD-like helicase C-terminal domain ND440_03290 PF12705 PD-(D/E)XK nuclease superfamily ND440_03295 PF13538 UvrD-like helicase C-terminal domain ND440_03300 PF00696 Amino acid kinase family ND440_03300 PF00583 Acetyltransferase (GNAT) family ND440_03305 PF01520 N-acetylmuramoyl-L-alanine amidase ND440_03305 PF11741 AMIN domain ND440_03325 PF06725 3D domain ND440_03325 PF03562 MltA specific insert domain ND440_03330 PF00899 ThiF family ND440_03335 PF02657 Fe-S metabolism associated domain ND440_03340 PF00266 Aminotransferase class-V ND440_03345 PF06004 Bacterial protein of unknown function (DUF903) ND440_03350 PF03466 LysR substrate binding domain ND440_03350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_03355 PF04241 Protein of unknown function (DUF423) ND440_03360 PF18125 RlmM ferredoxin-like domain ND440_03360 PF01728 FtsJ-like methyltransferase ND440_03370 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND440_03370 PF01367 5'-3' exonuclease, C-terminal SAM fold ND440_03375 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ND440_03375 PF03641 Possible lysine decarboxylase ND440_03375 PF11892 Domain of unknown function (DUF3412) ND440_03380 PF14489 QueF-like protein ND440_03380 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ND440_03385 PF07348 Syd protein (SUKH-2) ND440_03390 PF04287 tRNA pseudouridine synthase C ND440_03395 PF00849 RNA pseudouridylate synthase ND440_03400 PF00258 Flavodoxin ND440_03405 PF11944 Protein of unknown function (DUF3461) ND440_03410 PF00132 Bacterial transferase hexapeptide (six repeats) ND440_03410 PF14602 Hexapeptide repeat of succinyl-transferase ND440_03410 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ND440_03415 PF01842 ACT domain ND440_03415 PF08335 GlnD PII-uridylyltransferase ND440_03415 PF01966 HD domain ND440_03415 PF01909 Nucleotidyltransferase domain ND440_03420 PF00557 Metallopeptidase family M24 ND440_03430 PF00318 Ribosomal protein S2 ND440_03435 PF00889 Elongation factor TS ND440_03440 PF00696 Amino acid kinase family ND440_03445 PF01765 Ribosome recycling factor ND440_03450 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ND440_03450 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ND440_03450 PF13288 DXP reductoisomerase C-terminal domain ND440_03455 PF01255 Putative undecaprenyl diphosphate synthase ND440_03465 PF02163 Peptidase family M50 ND440_03465 PF17820 PDZ domain ND440_03470 PF07244 Surface antigen variable number repeat ND440_03470 PF01103 Surface antigen ND440_03475 PF03938 Outer membrane protein (OmpH-like) ND440_03480 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ND440_03480 PF00132 Bacterial transferase hexapeptide (six repeats) ND440_03485 PF07977 FabA-like domain ND440_03490 PF00132 Bacterial transferase hexapeptide (six repeats) ND440_03490 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ND440_03495 PF02684 Lipid-A-disaccharide synthetase ND440_03500 PF01351 Ribonuclease HII ND440_03505 PF07733 Bacterial DNA polymerase III alpha NTPase domain ND440_03505 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ND440_03505 PF14579 Helix-hairpin-helix motif ND440_03505 PF02811 PHP domain ND440_03505 PF01336 OB-fold nucleic acid binding domain ND440_03510 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ND440_03525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND440_03530 PF01171 PP-loop family ND440_03530 PF09179 TilS substrate binding domain ND440_03530 PF11734 TilS substrate C-terminal domain ND440_03535 PF00034 Cytochrome c ND440_03540 PF07073 Modulator of Rho-dependent transcription termination (ROF) ND440_03545 PF06786 Uncharacterised protein family (UPF0253) ND440_03550 PF07152 YaeQ protein ND440_03555 PF00472 RF-1 domain ND440_03560 PF04170 NlpE N-terminal domain ND440_03560 PF17185 NlpE C-terminal OB domain ND440_03565 PF04073 Aminoacyl-tRNA editing domain ND440_03565 PF03129 Anticodon binding domain ND440_03565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND440_03570 PF01980 tRNA-methyltransferase O ND440_03570 PF18389 TrmO C-terminal domain ND440_03575 PF16358 RcsF lipoprotein ND440_03580 PF03180 NLPA lipoprotein ND440_03585 PF00528 Binding-protein-dependent transport system inner membrane component ND440_03590 PF00005 ABC transporter ND440_03590 PF09383 NIL domain ND440_03625 PF03372 Endonuclease/Exonuclease/phosphatase family ND440_03630 PF01476 LysM domain ND440_03630 PF01464 Transglycosylase SLT domain ND440_03635 PF16123 Hydroxyacylglutathione hydrolase C-terminus ND440_03635 PF00753 Metallo-beta-lactamase superfamily ND440_03640 PF08241 Methyltransferase domain ND440_03645 PF00075 RNase H ND440_03650 PF00929 Exonuclease ND440_03660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND440_03660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND440_03660 PF09317 Domain of unknown function (DUF1974) ND440_03665 PF13580 SIS domain ND440_03670 PF13230 Glutamine amidotransferases class-II ND440_03675 PF03734 L,D-transpeptidase catalytic domain ND440_03680 PF11973 NQRA C-terminal domain ND440_03680 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ND440_03685 PF03116 NQR2, RnfD, RnfE family ND440_03690 PF04205 FMN-binding domain ND440_03695 PF02508 Rnf-Nqr subunit, membrane protein ND440_03700 PF02508 Rnf-Nqr subunit, membrane protein ND440_03705 PF00111 2Fe-2S iron-sulfur cluster binding domain ND440_03705 PF00175 Oxidoreductase NAD-binding domain ND440_03705 PF00970 Oxidoreductase FAD-binding domain ND440_03710 PF02424 ApbE family ND440_03715 PF04400 (Na+)-NQR maturation NqrM ND440_03720 PF03009 Glycerophosphoryl diester phosphodiesterase family ND440_03725 PF11798 IMS family HHH motif ND440_03725 PF00817 impB/mucB/samB family ND440_03725 PF11799 impB/mucB/samB family C-terminal domain ND440_03730 PF07687 Peptidase dimerisation domain ND440_03730 PF01546 Peptidase family M20/M25/M40 ND440_03735 PF00156 Phosphoribosyl transferase domain ND440_03740 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ND440_03745 PF07417 Sigma factor-binding transcriptional regulator Crl ND440_03750 PF00696 Amino acid kinase family ND440_03750 PF01472 PUA domain ND440_03755 PF00171 Aldehyde dehydrogenase family ND440_03760 PF07317 Flagellar regulator YcgR ND440_03760 PF07238 PilZ domain ND440_03785 PF07715 TonB-dependent Receptor Plug Domain ND440_03785 PF00593 TonB dependent receptor ND440_03790 PF01202 Shikimate kinase ND440_03810 PF07302 AroM protein ND440_03815 PF06865 Pyrimidine/purine nucleoside phosphorylase ND440_03820 PF04381 Putative exonuclease, RdgC ND440_03825 PF00480 ROK family ND440_03830 PF13476 AAA domain ND440_03835 PF12320 Type 5 capsule protein repressor C-terminal domain ND440_03835 PF00149 Calcineurin-like phosphoesterase ND440_03840 PF00072 Response regulator receiver domain ND440_03840 PF00486 Transcriptional regulatory protein, C terminal ND440_03845 PF11808 Phosphate regulon sensor protein PhoR ND440_03845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_03845 PF00512 His Kinase A (phospho-acceptor) domain ND440_03845 PF00989 PAS fold ND440_03850 PF12849 PBP superfamily domain ND440_03855 PF05525 Branched-chain amino acid transport protein ND440_03860 PF00324 Amino acid permease ND440_03865 PF00128 Alpha amylase, catalytic domain ND440_03865 PF02903 Alpha amylase, N-terminal ig-like domain ND440_03875 PF10417 C-terminal domain of 1-Cys peroxiredoxin ND440_03875 PF00578 AhpC/TSA family ND440_03880 PF04336 Acyl carrier protein phosphodiesterase ND440_03885 PF02547 Queuosine biosynthesis protein ND440_03890 PF01702 Queuine tRNA-ribosyltransferase ND440_03895 PF02699 Preprotein translocase subunit ND440_03900 PF07549 SecD/SecF GG Motif ND440_03900 PF02355 Protein export membrane protein ND440_03900 PF13721 SecD export protein N-terminal TM region ND440_03905 PF07549 SecD/SecF GG Motif ND440_03905 PF02355 Protein export membrane protein ND440_03910 PF03477 ATP cone domain ND440_03915 PF01872 RibD C-terminal domain ND440_03915 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND440_03920 PF00885 6,7-dimethyl-8-ribityllumazine synthase ND440_03925 PF01029 NusB family ND440_03930 PF00586 AIR synthase related protein, N-terminal domain ND440_03930 PF02769 AIR synthase related protein, C-terminal domain ND440_03935 PF04608 Phosphatidylglycerophosphatase A ND440_03940 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ND440_03940 PF02780 Transketolase, C-terminal domain ND440_03940 PF02779 Transketolase, pyrimidine binding domain ND440_03945 PF00348 Polyprenyl synthetase ND440_03950 PF02609 Exonuclease VII small subunit ND440_03955 PF02568 Thiamine biosynthesis protein (ThiI) ND440_03955 PF02926 THUMP domain ND440_03960 PF02954 Bacterial regulatory protein, Fis family ND440_03960 PF14532 Sigma-54 interaction domain ND440_03960 PF00072 Response regulator receiver domain ND440_03965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_03965 PF00512 His Kinase A (phospho-acceptor) domain ND440_03965 PF00672 HAMP domain ND440_03975 PF07690 Major Facilitator Superfamily ND440_03980 PF01965 DJ-1/PfpI family ND440_03985 PF02558 Ketopantoate reductase PanE/ApbA ND440_03985 PF08546 Ketopantoate reductase PanE/ApbA C terminal ND440_03990 PF04461 Protein of unknown function (DUF520) ND440_03995 PF07690 Major Facilitator Superfamily ND440_04000 PF01040 UbiA prenyltransferase family ND440_04005 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ND440_04010 PF00510 Cytochrome c oxidase subunit III ND440_04015 PF00115 Cytochrome C and Quinol oxidase polypeptide I ND440_04020 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ND440_04020 PF06481 COX Aromatic Rich Motif ND440_04025 PF03502 Nucleoside-specific channel-forming protein, Tsx ND440_04030 PF07690 Major Facilitator Superfamily ND440_04035 PF03923 Uncharacterized lipoprotein ND440_04035 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND440_04040 PF01722 BolA-like protein ND440_04045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND440_04045 PF05698 Bacterial trigger factor protein (TF) C-terminus ND440_04045 PF05697 Bacterial trigger factor protein (TF) ND440_04050 PF00574 Clp protease ND440_04055 PF06689 ClpX C4-type zinc finger ND440_04055 PF10431 C-terminal, D2-small domain, of ClpB protein ND440_04055 PF07724 AAA domain (Cdc48 subfamily) ND440_04060 PF05362 Lon protease (S16) C-terminal proteolytic domain ND440_04060 PF02190 ATP-dependent protease La (LON) substrate-binding domain ND440_04060 PF00004 ATPase family associated with various cellular activities (AAA) ND440_04065 PF00216 Bacterial DNA-binding protein ND440_04070 PF13145 PPIC-type PPIASE domain ND440_04085 PF06508 Queuosine biosynthesis protein QueC ND440_04090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND440_04090 PF12793 Sugar transport-related sRNA regulator N-term ND440_04105 PF13404 AsnC-type helix-turn-helix domain ND440_04105 PF01037 Lrp/AsnC ligand binding domain ND440_04110 PF00664 ABC transporter transmembrane region ND440_04110 PF00005 ABC transporter ND440_04115 PF00664 ABC transporter transmembrane region ND440_04115 PF00005 ABC transporter ND440_04120 PF00543 Nitrogen regulatory protein P-II ND440_04125 PF00909 Ammonium Transporter Family ND440_04135 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND440_04145 PF05321 Haemolysin expression modulating protein ND440_04150 PF10757 Biofilm formation regulator YbaJ ND440_04160 PF00444 Ribosomal protein L36 ND440_04165 PF01197 Ribosomal protein L31 ND440_04170 PF00873 AcrB/AcrD/AcrF family ND440_04175 PF00529 HlyD membrane-fusion protein of T1SS ND440_04175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND440_04180 PF08361 MAATS-type transcriptional repressor, C-terminal region ND440_04180 PF00440 Bacterial regulatory proteins, tetR family ND440_04185 PF02635 DsrE/DsrF-like family ND440_04190 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND440_04190 PF00924 Mechanosensitive ion channel ND440_04190 PF12795 Mechanosensitive ion channel porin domain ND440_04195 PF10689 Protein of unknown function (DUF2496) ND440_04205 PF04304 Protein of unknown function (DUF454) ND440_04210 PF00156 Phosphoribosyl transferase domain ND440_04215 PF01970 Tripartite tricarboxylate transporter TctA family ND440_04230 PF00072 Response regulator receiver domain ND440_04230 PF00486 Transcriptional regulatory protein, C terminal ND440_04235 PF00512 His Kinase A (phospho-acceptor) domain ND440_04235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_04240 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ND440_04240 PF12170 DNA polymerase III tau subunit V interacting with alpha ND440_04240 PF12169 DNA polymerase III subunits gamma and tau domain III ND440_04245 PF02575 YbaB/EbfC DNA-binding family ND440_04250 PF02132 RecR protein ND440_04250 PF13662 Toprim domain ND440_04255 PF00183 Hsp90 protein ND440_04255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_04260 PF05191 Adenylate kinase, active site lid ND440_04265 PF00762 Ferrochelatase ND440_04270 PF02706 Chain length determinant protein ND440_04275 PF00294 pfkB family carbohydrate kinase ND440_04280 PF02254 TrkA-N domain ND440_04280 PF00999 Sodium/hydrogen exchanger family ND440_04285 PF00149 Calcineurin-like phosphoesterase ND440_04285 PF02872 5'-nucleotidase, C-terminal domain ND440_04290 PF04073 Aminoacyl-tRNA editing domain ND440_04295 PF01963 TraB family ND440_04300 PF00403 Heavy-metal-associated domain ND440_04305 PF13411 MerR HTH family regulatory protein ND440_04310 PF01957 NfeD-like C-terminal, partner-binding ND440_04315 PF16200 C-terminal region of band_7 ND440_04315 PF01145 SPFH domain / Band 7 family ND440_04320 PF00085 Thioredoxin ND440_04325 PF00106 short chain dehydrogenase ND440_04330 PF13472 GDSL-like Lipase/Acylhydrolase family ND440_04335 PF00005 ABC transporter ND440_04345 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ND440_04345 PF02222 ATP-grasp domain ND440_04350 PF00731 AIR carboxylase ND440_04355 PF00149 Calcineurin-like phosphoesterase ND440_04360 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND440_04365 PF01406 tRNA synthetases class I (C) catalytic domain ND440_04365 PF09190 DALR domain ND440_04380 PF00419 Fimbrial protein ND440_04385 PF00577 Outer membrane usher protein ND440_04385 PF13954 PapC N-terminal domain ND440_04385 PF13953 PapC C-terminal domain ND440_04390 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND440_04390 PF02753 Pili assembly chaperone PapD, C-terminal domain ND440_04425 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ND440_04425 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ND440_04435 PF01022 Bacterial regulatory protein, arsR family ND440_04440 PF02040 Arsenical pump membrane protein ND440_04445 PF03960 ArsC family ND440_04455 PF00501 AMP-binding enzyme ND440_04480 PF01292 Prokaryotic cytochrome b561 ND440_04490 PF00343 Carbohydrate phosphorylase ND440_04500 PF00072 Response regulator receiver domain ND440_04500 PF00486 Transcriptional regulatory protein, C terminal ND440_04510 PF00483 Nucleotidyl transferase ND440_04520 PF03552 Cellulose synthase ND440_04520 PF00535 Glycosyl transferase family 2 ND440_04520 PF07238 PilZ domain ND440_04540 PF16355 Domain of unknown function (DUF4982) ND440_04540 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND440_04540 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND440_04540 PF00703 Glycosyl hydrolases family 2 ND440_04545 PF00512 His Kinase A (phospho-acceptor) domain ND440_04545 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND440_04545 PF00072 Response regulator receiver domain ND440_04545 PF01627 Hpt domain ND440_04545 PF00672 HAMP domain ND440_04545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_04550 PF00072 Response regulator receiver domain ND440_04550 PF00990 Diguanylate cyclase, GGDEF domain ND440_04555 PF00440 Bacterial regulatory proteins, tetR family ND440_04585 PF00196 Bacterial regulatory proteins, luxR family ND440_04590 PF00313 'Cold-shock' DNA-binding domain ND440_04595 PF00313 'Cold-shock' DNA-binding domain ND440_04600 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ND440_04610 PF00990 Diguanylate cyclase, GGDEF domain ND440_04610 PF05230 MASE2 domain ND440_04615 PF02416 mttA/Hcf106 family ND440_04620 PF04055 Radical SAM superfamily ND440_04620 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ND440_04625 PF03099 Biotin/lipoate A/B protein ligase family ND440_04630 PF04359 Protein of unknown function (DUF493) ND440_04635 PF00768 D-alanyl-D-alanine carboxypeptidase ND440_04635 PF07943 Penicillin-binding protein 5, C-terminal domain ND440_04640 PF05036 Sporulation related domain ND440_04640 PF03330 Lytic transglycolase ND440_04645 PF01098 Cell cycle protein ND440_04650 PF03717 Penicillin-binding Protein dimerisation domain ND440_04650 PF00905 Penicillin binding protein transpeptidase domain ND440_04655 PF02590 Predicted SPOUT methyltransferase ND440_04665 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain ND440_04665 PF00589 Phage integrase family ND440_04725 PF00929 Exonuclease ND440_04790 PF00772 DnaB-like helicase N terminal domain ND440_04790 PF03796 DnaB-like helicase C terminal domain ND440_04815 PF00149 Calcineurin-like phosphoesterase ND440_04850 PF03245 Bacteriophage Rz lysis protein ND440_04890 PF01343 Peptidase family S49 ND440_04930 PF17482 Phage tail sheath C-terminal domain ND440_04930 PF04984 Phage tail sheath protein subtilisin-like domain ND440_04970 PF04865 Baseplate J-like protein ND440_04985 PF07484 Phage Tail Collar Domain ND440_04985 PF03335 Phage tail fibre repeat ND440_04985 PF08400 Prophage tail fibre N-terminal ND440_04990 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND440_04995 PF01467 Cytidylyltransferase-like ND440_05000 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ND440_05000 PF06144 DNA polymerase III, delta subunit ND440_05005 PF04390 Lipopolysaccharide-assembly ND440_05010 PF00133 tRNA synthetases class I (I, L, M and V) ND440_05010 PF13603 Leucyl-tRNA synthetase, Domain 2 ND440_05010 PF08264 Anticodon-binding domain of tRNA ND440_05015 PF07295 Zinc-ribbon containing domain ND440_05020 PF00005 ABC transporter ND440_05025 PF00528 Binding-protein-dependent transport system inner membrane component ND440_05030 PF00528 Binding-protein-dependent transport system inner membrane component ND440_05035 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND440_05040 PF00795 Carbon-nitrogen hydrolase ND440_05045 PF00571 CBS domain ND440_05045 PF03471 Transporter associated domain ND440_05050 PF02130 Uncharacterized protein family UPF0054 ND440_05055 PF02562 PhoH-like protein ND440_05060 PF04055 Radical SAM superfamily ND440_05060 PF01938 TRAM domain ND440_05060 PF00919 Uncharacterized protein family UPF0004 ND440_05065 PF01494 FAD binding domain ND440_05100 PF00733 Asparagine synthase ND440_05100 PF13537 Glutamine amidotransferase domain ND440_05105 PF13344 Haloacid dehalogenase-like hydrolase ND440_05110 PF00480 ROK family ND440_05110 PF01047 MarR family ND440_05115 PF01979 Amidohydrolase family ND440_05120 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ND440_05125 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND440_05125 PF00367 phosphotransferase system, EIIB ND440_05125 PF02378 Phosphotransferase system, EIIC ND440_05130 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND440_05130 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ND440_05135 PF03573 outer membrane porin, OprD family ND440_05140 PF13982 YbfN-like lipoprotein ND440_05145 PF03173 Putative carbohydrate binding domain ND440_05145 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ND440_05145 PF00728 Glycosyl hydrolase family 20, catalytic domain ND440_05145 PF02838 Glycosyl hydrolase family 20, domain 2 ND440_05150 PF01475 Ferric uptake regulator family ND440_05155 PF00258 Flavodoxin ND440_05160 PF02203 Tar ligand binding domain homologue ND440_05160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND440_05160 PF00672 HAMP domain ND440_05165 PF01402 Ribbon-helix-helix protein, copG family ND440_05170 PF12697 Alpha/beta hydrolase family ND440_05175 PF03925 SeqA protein C-terminal domain ND440_05175 PF17206 SeqA protein N-terminal domain ND440_05180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND440_05180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND440_05180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND440_05180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND440_05190 PF00486 Transcriptional regulatory protein, C terminal ND440_05190 PF00072 Response regulator receiver domain ND440_05195 PF13493 Domain of unknown function (DUF4118) ND440_05195 PF13492 GAF domain ND440_05195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_05195 PF00512 His Kinase A (phospho-acceptor) domain ND440_05195 PF02702 Osmosensitive K+ channel His kinase sensor domain ND440_05200 PF02669 K+-transporting ATPase, c chain ND440_05210 PF03814 Potassium-transporting ATPase A subunit ND440_05215 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) ND440_05220 PF10725 Protein of unknown function (DUF2517) ND440_05225 PF08349 Protein of unknown function (DUF1722) ND440_05230 PF03441 FAD binding domain of DNA photolyase ND440_05230 PF00875 DNA photolyase ND440_05235 PF02112 cAMP phosphodiesterases class-II ND440_05240 PF01784 NIF3 (NGG1p interacting factor 3) ND440_05245 PF02682 Carboxyltransferase domain, subdomain C and D ND440_05250 PF02626 Carboxyltransferase domain, subdomain A and B ND440_05255 PF03746 LamB/YcsF family ND440_05270 PF01470 Pyroglutamyl peptidase ND440_05280 PF00285 Citrate synthase, C-terminal domain ND440_05285 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND440_05290 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND440_05295 PF02910 Fumarate reductase flavoprotein C-term ND440_05295 PF00890 FAD binding domain ND440_05300 PF13085 2Fe-2S iron-sulfur cluster binding domain ND440_05305 PF16078 2-oxoglutarate dehydrogenase N-terminus ND440_05305 PF00676 Dehydrogenase E1 component ND440_05305 PF16870 2-oxoglutarate dehydrogenase C-terminal ND440_05305 PF02779 Transketolase, pyrimidine binding domain ND440_05310 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND440_05310 PF00364 Biotin-requiring enzyme ND440_05310 PF02817 e3 binding domain ND440_05315 PF08442 ATP-grasp domain ND440_05315 PF00549 CoA-ligase ND440_05320 PF02629 CoA binding domain ND440_05320 PF00549 CoA-ligase ND440_05325 PF02872 5'-nucleotidase, C-terminal domain ND440_05325 PF00149 Calcineurin-like phosphoesterase ND440_05330 PF01654 Cytochrome bd terminal oxidase subunit I ND440_05335 PF02322 Cytochrome bd terminal oxidase subunit II ND440_05340 PF08173 Membrane bound YbgT-like protein ND440_05345 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ND440_05350 PF03061 Thioesterase superfamily ND440_05355 PF01618 MotA/TolQ/ExbB proton channel family ND440_05360 PF02472 Biopolymer transport protein ExbD/TolR ND440_05365 PF06519 TolA C-terminal ND440_05365 PF06519 TolA C-terminal ND440_05370 PF07676 WD40-like Beta Propeller Repeat ND440_05370 PF04052 TolB amino-terminal domain ND440_05375 PF00691 OmpA family ND440_05380 PF16331 TolA binding protein trimerisation ND440_05380 PF13174 Tetratricopeptide repeat ND440_05410 PF02445 Quinolinate synthetase A protein ND440_05415 PF04973 Nicotinamide mononucleotide transporter ND440_05420 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND440_05420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_05420 PF00512 His Kinase A (phospho-acceptor) domain ND440_05420 PF01627 Hpt domain ND440_05420 PF00989 PAS fold ND440_05420 PF00072 Response regulator receiver domain ND440_05425 PF00196 Bacterial regulatory proteins, luxR family ND440_05425 PF00072 Response regulator receiver domain ND440_05430 PF00793 DAHP synthetase I family ND440_05435 PF00300 Histidine phosphatase superfamily (branch 1) ND440_05445 PF01263 Aldose 1-epimerase ND440_05450 PF10509 Galactokinase galactose-binding signature ND440_05450 PF08544 GHMP kinases C terminal ND440_05450 PF00288 GHMP kinases N terminal domain ND440_05455 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ND440_05455 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ND440_05460 PF16363 GDP-mannose 4,6 dehydratase ND440_05475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_05475 PF03459 TOBE domain ND440_05480 PF10766 Multidrug efflux pump-associated protein AcrZ ND440_05490 PF00528 Binding-protein-dependent transport system inner membrane component ND440_05495 PF03459 TOBE domain ND440_05495 PF00005 ABC transporter ND440_05505 PF10282 Lactonase, 7-bladed beta-propeller ND440_05510 PF00202 Aminotransferase class-III ND440_05515 PF06968 Biotin and Thiamin Synthesis associated domain ND440_05515 PF04055 Radical SAM superfamily ND440_05520 PF00155 Aminotransferase class I and II ND440_05525 PF08241 Methyltransferase domain ND440_05535 PF00005 ABC transporter ND440_05540 PF00271 Helicase conserved C-terminal domain ND440_05540 PF04851 Type III restriction enzyme, res subunit ND440_05540 PF02151 UvrB/uvrC motif ND440_05540 PF12344 Ultra-violet resistance protein B ND440_05540 PF17757 UvrB interaction domain ND440_05545 PF09905 DNA-binding protein VF530 ND440_05560 PF01032 FecCD transport family ND440_05565 PF00005 ABC transporter ND440_05570 PF01933 Uncharacterised protein family UPF0052 ND440_05575 PF06463 Molybdenum Cofactor Synthesis C ND440_05575 PF04055 Radical SAM superfamily ND440_05580 PF01967 MoaC family ND440_05585 PF02597 ThiS family ND440_05590 PF02391 MoaE protein ND440_05595 PF01027 Inhibitor of apoptosis-promoting Bax1 ND440_05610 PF00005 ABC transporter ND440_05615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND440_05620 PF09209 Tetracyclin repressor-like, C-terminal domain ND440_05620 PF00440 Bacterial regulatory proteins, tetR family ND440_05625 PF00270 DEAD/DEAH box helicase ND440_05625 PF00271 Helicase conserved C-terminal domain ND440_05630 PF01207 Dihydrouridine synthase (Dus) ND440_05640 PF00768 D-alanyl-D-alanine carboxypeptidase ND440_05645 PF01565 FAD binding domain ND440_05645 PF09330 D-lactate dehydrogenase, membrane binding ND440_05650 PF01928 CYTH domain ND440_05655 PF01844 HNH endonuclease ND440_05665 PF04226 Transglycosylase associated protein ND440_05670 PF00005 ABC transporter ND440_05680 PF00528 Binding-protein-dependent transport system inner membrane component ND440_05685 PF00528 Binding-protein-dependent transport system inner membrane component ND440_05690 PF07308 Protein of unknown function (DUF1456) ND440_05695 PF00581 Rhodanese-like domain ND440_05700 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND440_05705 PF00528 Binding-protein-dependent transport system inner membrane component ND440_05710 PF00005 ABC transporter ND440_05715 PF00528 Binding-protein-dependent transport system inner membrane component ND440_05720 PF13520 Amino acid permease ND440_05725 PF01276 Orn/Lys/Arg decarboxylase, major domain ND440_05725 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND440_05725 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND440_05735 PF00892 EamA-like transporter family ND440_05740 PF00267 Gram-negative porin ND440_05745 PF06733 DEAD_2 ND440_05745 PF13307 Helicase C-terminal domain ND440_05750 PF02885 Glycosyl transferase family, helical bundle domain ND440_05755 PF05971 RNA methyltransferase ND440_05760 PF00005 ABC transporter ND440_05765 PF00528 Binding-protein-dependent transport system inner membrane component ND440_05770 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND440_05775 PF00210 Ferritin-like domain ND440_05780 PF13649 Methyltransferase domain ND440_05785 PF00892 EamA-like transporter family ND440_05790 PF13505 Outer membrane protein beta-barrel domain ND440_05795 PF00571 CBS domain ND440_05795 PF01769 Divalent cation transporter ND440_05795 PF03448 MgtE intracellular N domain ND440_05800 PF16916 Dimerisation domain of Zinc Transporter ND440_05800 PF01545 Cation efflux family ND440_05805 PF00005 ABC transporter ND440_05805 PF12848 ABC transporter ND440_05810 PF00899 ThiF family ND440_05815 PF00994 Probable molybdopterin binding domain ND440_05815 PF03454 MoeA C-terminal region (domain IV) ND440_05815 PF03453 MoeA N-terminal region (domain I and II) ND440_05825 PF00756 Putative esterase ND440_05830 PF00107 Zinc-binding dehydrogenase ND440_05830 PF08240 Alcohol dehydrogenase GroES-like domain ND440_05835 PF03466 LysR substrate binding domain ND440_05835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_05840 PF06779 Uncharacterised MFS-type transporter YbfB ND440_05845 PF01227 GTP cyclohydrolase I ND440_05850 PF04235 Protein of unknown function (DUF418) ND440_05855 PF00356 Bacterial regulatory proteins, lacI family ND440_05860 PF13407 Periplasmic binding protein domain ND440_05865 PF00005 ABC transporter ND440_05870 PF02653 Branched-chain amino acid transport system / permease component ND440_05875 PF02698 DUF218 domain ND440_05880 PF03949 Malic enzyme, NAD binding domain ND440_05880 PF00390 Malic enzyme, N-terminal domain ND440_05890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_05890 PF03466 LysR substrate binding domain ND440_05895 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND440_05895 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ND440_05900 PF04172 LrgB-like family ND440_05905 PF03788 LrgA family ND440_05915 PF09334 tRNA synthetases class I (M) ND440_05915 PF01588 Putative tRNA binding domain ND440_05920 PF10609 NUBPL iron-transfer P-loop NTPase ND440_05925 PF00485 Phosphoribulokinase / Uridine kinase family ND440_05930 PF00692 dUTPase ND440_05935 PF05170 AsmA family ND440_05940 PF03606 C4-dicarboxylate anaerobic carrier ND440_05945 PF03741 Integral membrane protein TerC family ND440_05945 PF03471 Transporter associated domain ND440_05945 PF00571 CBS domain ND440_05950 PF00483 Nucleotidyl transferase ND440_05955 PF00483 Nucleotidyl transferase ND440_05960 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ND440_05960 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ND440_05970 PF01502 Phosphoribosyl-AMP cyclohydrolase ND440_05970 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ND440_05975 PF00977 Histidine biosynthesis protein ND440_05980 PF00977 Histidine biosynthesis protein ND440_05985 PF00117 Glutamine amidotransferase class-I ND440_05990 PF00475 Imidazoleglycerol-phosphate dehydratase ND440_05995 PF00155 Aminotransferase class I and II ND440_06000 PF00815 Histidinol dehydrogenase ND440_06005 PF01634 ATP phosphoribosyltransferase ND440_06005 PF08029 HisG, C-terminal domain ND440_06015 PF01370 NAD dependent epimerase/dehydratase family ND440_06020 PF00043 Glutathione S-transferase, C-terminal domain ND440_06020 PF13417 Glutathione S-transferase, N-terminal domain ND440_06035 PF01053 Cys/Met metabolism PLP-dependent enzyme ND440_06040 PF00291 Pyridoxal-phosphate dependent enzyme ND440_06040 PF00571 CBS domain ND440_06045 PF07943 Penicillin-binding protein 5, C-terminal domain ND440_06045 PF00768 D-alanyl-D-alanine carboxypeptidase ND440_06050 PF03313 Serine dehydratase alpha chain ND440_06050 PF03315 Serine dehydratase beta chain ND440_06060 PF00455 DeoR C terminal sensor domain ND440_06060 PF08220 DeoR-like helix-turn-helix domain ND440_06065 PF01791 DeoC/LacD family aldolase ND440_06070 PF01569 PAP2 superfamily ND440_06080 PF02080 TrkA-C domain ND440_06080 PF06826 Predicted Permease Membrane Region ND440_06085 PF00462 Glutaredoxin ND440_06090 PF07214 Protein of unknown function (DUF1418) ND440_06095 PF10722 Putative bacterial sensory transduction regulator ND440_06100 PF13416 Bacterial extracellular solute-binding protein ND440_06105 PF00005 ABC transporter ND440_06105 PF08402 TOBE domain ND440_06110 PF00528 Binding-protein-dependent transport system inner membrane component ND440_06115 PF00528 Binding-protein-dependent transport system inner membrane component ND440_06120 PF10767 Protein of unknown function (DUF2593) ND440_06125 PF05958 tRNA (Uracil-5-)-methyltransferase ND440_06130 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND440_06135 PF00528 Binding-protein-dependent transport system inner membrane component ND440_06140 PF00528 Binding-protein-dependent transport system inner membrane component ND440_06145 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND440_06150 PF00005 ABC transporter ND440_06155 PF12883 Protein of unknown function (DUF3828) ND440_06160 PF01906 Putative heavy-metal-binding ND440_06165 PF01370 NAD dependent epimerase/dehydratase family ND440_06170 PF13460 NAD(P)H-binding ND440_06170 PF11066 Protein of unknown function (DUF2867) ND440_06175 PF01212 Beta-eliminating lyase ND440_06180 PF00970 Oxidoreductase FAD-binding domain ND440_06180 PF00175 Oxidoreductase NAD-binding domain ND440_06180 PF00111 2Fe-2S iron-sulfur cluster binding domain ND440_06185 PF03063 Prismane/CO dehydrogenase family ND440_06190 PF03956 Lysine exporter LysO ND440_06195 PF11398 Protein of unknown function (DUF2813) ND440_06200 PF04393 Protein of unknown function (DUF535) ND440_06205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND440_06210 PF12704 MacB-like periplasmic core domain ND440_06210 PF02687 FtsX-like permease family ND440_06210 PF00005 ABC transporter ND440_06215 PF00313 'Cold-shock' DNA-binding domain ND440_06220 PF02617 ATP-dependent Clp protease adaptor protein ClpS ND440_06225 PF10431 C-terminal, D2-small domain, of ClpB protein ND440_06225 PF02861 Clp amino terminal domain, pathogenicity island component ND440_06225 PF17871 AAA lid domain ND440_06225 PF00004 ATPase family associated with various cellular activities (AAA) ND440_06225 PF07724 AAA domain (Cdc48 subfamily) ND440_06230 PF01176 Translation initiation factor 1A / IF-1 ND440_06235 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ND440_06240 PF00664 ABC transporter transmembrane region ND440_06240 PF00005 ABC transporter ND440_06245 PF00664 ABC transporter transmembrane region ND440_06245 PF00005 ABC transporter ND440_06250 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND440_06255 PF01037 Lrp/AsnC ligand binding domain ND440_06260 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND440_06260 PF17854 FtsK alpha domain ND440_06260 PF09397 Ftsk gamma domain ND440_06260 PF01580 FtsK/SpoIIIE family ND440_06265 PF03548 Outer membrane lipoprotein carrier protein LolA ND440_06270 PF00004 ATPase family associated with various cellular activities (AAA) ND440_06270 PF16193 AAA C-terminal domain ND440_06270 PF12002 MgsA AAA+ ATPase C terminal ND440_06275 PF02403 Seryl-tRNA synthetase N-terminal domain ND440_06275 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND440_06280 PF07690 Major Facilitator Superfamily ND440_06285 PF04055 Radical SAM superfamily ND440_06290 PF02901 Pyruvate formate lyase-like ND440_06290 PF01228 Glycine radical ND440_06295 PF01226 Formate/nitrite transporter ND440_06300 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ND440_06300 PF18381 YcaO cyclodehydratase C-terminal domain ND440_06305 PF17763 Glutaminase/Asparaginase C-terminal domain ND440_06305 PF00710 Asparaginase, N-terminal ND440_06310 PF00266 Aminotransferase class-V ND440_06315 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND440_06320 PF02224 Cytidylate kinase ND440_06325 PF00575 S1 RNA binding domain ND440_06330 PF00216 Bacterial DNA-binding protein ND440_06335 PF03772 Competence protein ND440_06335 PF00753 Metallo-beta-lactamase superfamily ND440_06340 PF00664 ABC transporter transmembrane region ND440_06340 PF00005 ABC transporter ND440_06345 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ND440_06350 PF07063 Domain of unknown function (DUF1338) ND440_06355 PF00313 'Cold-shock' DNA-binding domain ND440_06360 PF00313 'Cold-shock' DNA-binding domain ND440_06365 PF03966 Trm112p-like protein ND440_06370 PF02348 Cytidylyltransferase ND440_06375 PF01636 Phosphotransferase enzyme family ND440_06380 PF02698 DUF218 domain ND440_06385 PF13847 Methyltransferase domain ND440_06390 PF03882 MukF winged-helix domain ND440_06390 PF17193 MukF C-terminal domain ND440_06390 PF17192 MukF middle domain ND440_06395 PF04288 MukE-like family ND440_06400 PF16330 MukB hinge domain ND440_06400 PF04310 MukB N-terminal ND440_06405 PF01471 Putative peptidoglycan binding domain ND440_06405 PF03734 L,D-transpeptidase catalytic domain ND440_06410 PF05951 Bacterial protein of unknown function (DUF882) ND440_06415 PF00753 Metallo-beta-lactamase superfamily ND440_06420 PF00155 Aminotransferase class I and II ND440_06425 PF00267 Gram-negative porin ND440_06430 PF00152 tRNA synthetases class II (D, K and N) ND440_06430 PF01336 OB-fold nucleic acid binding domain ND440_06435 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ND440_06435 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ND440_06440 PF01433 Peptidase family M1 domain ND440_06440 PF11940 Domain of unknown function (DUF3458) Ig-like fold ND440_06440 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ND440_06445 PF01180 Dihydroorotate dehydrogenase ND440_06450 PF07126 Cell-division protein ZapC ND440_06455 PF00111 2Fe-2S iron-sulfur cluster binding domain ND440_06455 PF03473 MOSC domain ND440_06455 PF03476 MOSC N-terminal beta barrel domain ND440_06460 PF10672 S-adenosylmethionine-dependent methyltransferase ND440_06460 PF02926 THUMP domain ND440_06460 PF01170 Putative RNA methylase family UPF0020 ND440_06465 PF00005 ABC transporter ND440_06465 PF16326 ABC transporter C-terminal domain ND440_06465 PF12848 ABC transporter ND440_06470 PF04403 Paraquat-inducible protein A ND440_06475 PF02470 MlaD protein ND440_06480 PF03886 ABC-type transport auxiliary lipoprotein component ND440_06485 PF04957 Ribosome modulation factor ND440_06490 PF07977 FabA-like domain ND440_06495 PF05362 Lon protease (S16) C-terminal proteolytic domain ND440_06495 PF13654 AAA domain ND440_06500 PF17414 MatP C-terminal ribbon-helix-helix domain ND440_06500 PF06303 MatP N-terminal domain ND440_06505 PF00691 OmpA family ND440_06505 PF01389 OmpA-like transmembrane domain ND440_06510 PF03846 Cell division inhibitor SulA ND440_06515 PF04993 TfoX N-terminal domain ND440_06515 PF04994 TfoX C-terminal domain ND440_06520 PF12805 FUSC-like inner membrane protein yccS ND440_06525 PF03733 Inner membrane component domain ND440_06530 PF12462 DNA helicase IV / RNA helicase N terminal ND440_06530 PF00580 UvrD/REP helicase N-terminal domain ND440_06530 PF13361 UvrD-like helicase C-terminal domain ND440_06535 PF02142 MGS-like domain ND440_06540 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ND440_06545 PF13380 CoA binding domain ND440_06550 PF08755 Hemimethylated DNA-binding protein YccV like ND440_06555 PF10672 S-adenosylmethionine-dependent methyltransferase ND440_06555 PF17785 PUA-like domain ND440_06560 PF00708 Acylphosphatase ND440_06565 PF04358 DsrC like protein ND440_06575 PF00484 Carbonic anhydrase ND440_06580 PF02080 TrkA-C domain ND440_06580 PF03471 Transporter associated domain ND440_06580 PF00999 Sodium/hydrogen exchanger family ND440_06590 PF01757 Acyltransferase family ND440_06595 PF04349 Periplasmic glucan biosynthesis protein, MdoG ND440_06600 PF00535 Glycosyl transferase family 2 ND440_06610 PF00854 POT family ND440_06620 PF03279 Bacterial lipid A biosynthesis acyltransferase ND440_06625 PF00581 Rhodanese-like domain ND440_06625 PF17773 UPF0176 acylphosphatase like domain ND440_06625 PF12368 Rhodanase C-terminal ND440_06630 PF01594 AI-2E family transporter ND440_06635 PF00196 Bacterial regulatory proteins, luxR family ND440_06640 PF01266 FAD dependent oxidoreductase ND440_06645 PF13991 BssS protein family ND440_06650 PF06183 DinI-like family ND440_06655 PF01979 Amidohydrolase family ND440_06660 PF03992 Antibiotic biosynthesis monooxygenase ND440_06670 PF12111 Polyribonucleotide phosphorylase C terminal ND440_06670 PF00575 S1 RNA binding domain ND440_06670 PF10150 Ribonuclease E/G family ND440_06675 PF00849 RNA pseudouridylate synthase ND440_06675 PF01479 S4 domain ND440_06680 PF02545 Maf-like protein ND440_06685 PF02620 Large ribosomal RNA subunit accumulation protein YceD ND440_06690 PF01783 Ribosomal L32p protein family ND440_06695 PF02504 Fatty acid synthesis protein ND440_06700 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ND440_06700 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ND440_06705 PF00698 Acyl transferase domain ND440_06715 PF00550 Phosphopantetheine attachment site ND440_06720 PF00109 Beta-ketoacyl synthase, N-terminal domain ND440_06720 PF02801 Beta-ketoacyl synthase, C-terminal domain ND440_06725 PF01063 Amino-transferase class IV ND440_06730 PF02618 YceG-like family ND440_06735 PF02223 Thymidylate kinase ND440_06740 PF09115 DNA polymerase III, delta subunit, C terminal ND440_06745 PF01026 TatD related DNase ND440_06750 PF02378 Phosphotransferase system, EIIC ND440_06750 PF00367 phosphotransferase system, EIIB ND440_06755 PF01230 HIT domain ND440_06760 PF07233 Protein of unknown function (DUF1425) ND440_06765 PF13036 Peptidoglycan-synthase activator LpoB ND440_06765 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND440_06770 PF01636 Phosphotransferase enzyme family ND440_06775 PF00933 Glycosyl hydrolase family 3 N terminal domain ND440_06780 PF05728 Uncharacterised protein family (UPF0227) ND440_06785 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND440_06790 PF05433 Glycine zipper 2TM domain ND440_06795 PF17757 UvrB interaction domain ND440_06795 PF03461 TRCF domain ND440_06795 PF00271 Helicase conserved C-terminal domain ND440_06795 PF02559 CarD-like/TRCF domain ND440_06795 PF00270 DEAD/DEAH box helicase ND440_06800 PF02687 FtsX-like permease family ND440_06800 PF12704 MacB-like periplasmic core domain ND440_06805 PF00005 ABC transporter ND440_06810 PF02687 FtsX-like permease family ND440_06810 PF12704 MacB-like periplasmic core domain ND440_06815 PF00480 ROK family ND440_06820 PF02146 Sir2 family ND440_06825 PF07687 Peptidase dimerisation domain ND440_06825 PF01546 Peptidase family M20/M25/M40 ND440_06830 PF08007 Cupin superfamily protein ND440_06835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_06835 PF08918 PhoQ Sensor ND440_06840 PF00072 Response regulator receiver domain ND440_06840 PF00486 Transcriptional regulatory protein, C terminal ND440_06850 PF08328 Adenylosuccinate lyase C-terminal ND440_06850 PF00206 Lyase ND440_06855 PF04356 Protein of unknown function (DUF489) ND440_06865 PF00293 NUDIX domain ND440_06870 PF00849 RNA pseudouridylate synthase ND440_06875 PF00180 Isocitrate/isopropylmalate dehydrogenase ND440_06880 PF03472 Autoinducer binding domain ND440_06880 PF00196 Bacterial regulatory proteins, luxR family ND440_06885 PF00765 Autoinducer synthase ND440_06890 PF00232 Glycosyl hydrolase family 1 ND440_06900 PF01432 Peptidase family M3 ND440_06910 PF03390 2-hydroxycarboxylate transporter family ND440_06915 PF00072 Response regulator receiver domain ND440_06920 PF17203 Single cache domain 3 ND440_06920 PF00989 PAS fold ND440_06920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_06920 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND440_06925 PF00939 Sodium:sulfate symporter transmembrane region ND440_06930 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ND440_06930 PF00413 Matrixin ND440_06930 PF08548 Peptidase M10 serralysin C terminal ND440_06935 PF02974 Protease inhibitor Inh ND440_06940 PF00664 ABC transporter transmembrane region ND440_06940 PF00005 ABC transporter ND440_06945 PF00529 HlyD membrane-fusion protein of T1SS ND440_06950 PF02321 Outer membrane efflux protein ND440_06965 PF02311 AraC-like ligand binding domain ND440_06965 PF12833 Helix-turn-helix domain ND440_06970 PF02562 PhoH-like protein ND440_06975 PF01699 Sodium/calcium exchanger protein ND440_06980 PF04954 Siderophore-interacting protein ND440_06980 PF08021 Siderophore-interacting FAD-binding domain ND440_06985 PF07730 Histidine kinase ND440_06985 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ND440_06985 PF00672 HAMP domain ND440_06985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_06995 PF02322 Cytochrome bd terminal oxidase subunit II ND440_07000 PF01654 Cytochrome bd terminal oxidase subunit I ND440_07005 PF00155 Aminotransferase class I and II ND440_07005 PF00392 Bacterial regulatory proteins, gntR family ND440_07010 PF00202 Aminotransferase class-III ND440_07015 PF04958 Arginine N-succinyltransferase beta subunit ND440_07020 PF00171 Aldehyde dehydrogenase family ND440_07025 PF04996 Succinylarginine dihydrolase ND440_07035 PF00267 Gram-negative porin ND440_07045 PF01979 Amidohydrolase family ND440_07050 PF00392 Bacterial regulatory proteins, gntR family ND440_07050 PF07702 UTRA domain ND440_07055 PF01979 Amidohydrolase family ND440_07060 PF05962 HutD ND440_07065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_07065 PF03466 LysR substrate binding domain ND440_07075 PF03824 High-affinity nickel-transport protein ND440_07080 PF00708 Acylphosphatase ND440_07080 PF01300 Telomere recombination ND440_07080 PF17788 HypF Kae1-like domain ND440_07080 PF07503 HypF finger ND440_07085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND440_07085 PF00384 Molybdopterin oxidoreductase ND440_07085 PF01568 Molydopterin dinucleotide binding domain ND440_07090 PF13247 4Fe-4S dicluster domain ND440_07090 PF12800 4Fe-4S binding domain ND440_07095 PF01750 Hydrogenase maturation protease ND440_07100 PF07450 Formate hydrogenlyase maturation protein HycH ND440_07105 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND440_07110 PF12838 4Fe-4S dicluster domain ND440_07115 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND440_07115 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND440_07115 PF00374 Nickel-dependent hydrogenase ND440_07120 PF00146 NADH dehydrogenase ND440_07125 PF00361 Proton-conducting membrane transporter ND440_07130 PF13247 4Fe-4S dicluster domain ND440_07135 PF11046 Transcriptional repressor of hyc and hyp operons ND440_07140 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ND440_07145 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND440_07150 PF01455 HupF/HypC family ND440_07155 PF01924 Hydrogenase formation hypA family ND440_07160 PF02769 AIR synthase related protein, C-terminal domain ND440_07160 PF00586 AIR synthase related protein, N-terminal domain ND440_07165 PF01590 GAF domain ND440_07165 PF02954 Bacterial regulatory protein, Fis family ND440_07165 PF00158 Sigma-54 interaction domain ND440_07175 PF13954 PapC N-terminal domain ND440_07175 PF00577 Outer membrane usher protein ND440_07180 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND440_07180 PF02753 Pili assembly chaperone PapD, C-terminal domain ND440_07195 PF12833 Helix-turn-helix domain ND440_07200 PF01926 50S ribosome-binding GTPase ND440_07200 PF06071 Protein of unknown function (DUF933) ND440_07210 PF01195 Peptidyl-tRNA hydrolase ND440_07215 PF10762 Protein of unknown function (DUF2583) ND440_07220 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ND440_07220 PF14572 Phosphoribosyl synthetase-associated domain ND440_07225 PF08544 GHMP kinases C terminal ND440_07225 PF00288 GHMP kinases N terminal domain ND440_07230 PF03550 Outer membrane lipoprotein LolB ND440_07235 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ND440_07235 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ND440_07235 PF01488 Shikimate / quinate 5-dehydrogenase ND440_07240 PF03462 PCRF domain ND440_07240 PF00472 RF-1 domain ND440_07245 PF13847 Methyltransferase domain ND440_07245 PF17827 PrmC N-terminal domain ND440_07250 PF04247 Invasion gene expression up-regulator, SirB ND440_07255 PF13369 Transglutaminase-like superfamily ND440_07260 PF00793 DAHP synthetase I family ND440_07265 PF01740 STAS domain ND440_07265 PF00916 Sulfate permease family ND440_07270 PF00990 Diguanylate cyclase, GGDEF domain ND440_07280 PF03009 Glycerophosphoryl diester phosphodiesterase family ND440_07290 PF00854 POT family ND440_07295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND440_07300 PF02811 PHP domain ND440_07305 PF02613 Nitrate reductase delta subunit ND440_07310 PF07273 Protein of unknown function (DUF1439) ND440_07320 PF07690 Major Facilitator Superfamily ND440_07325 PF13302 Acetyltransferase (GNAT) domain ND440_07330 PF04337 Protein of unknown function, DUF480 ND440_07335 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND440_07340 PF03023 Lipid II flippase MurJ ND440_07345 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND440_07345 PF17287 POTRA domain ND440_07345 PF08479 POTRA domain, ShlB-type ND440_07350 PF13332 Hemagglutinin repeat ND440_07350 PF05860 haemagglutination activity domain ND440_07360 PF05746 DALR anticodon binding domain ND440_07360 PF03485 Arginyl tRNA synthetase N terminal domain ND440_07360 PF00750 tRNA synthetases class I (R) ND440_07365 PF06185 YecM protein ND440_07370 PF03932 CutC family ND440_07375 PF08003 Protein of unknown function (DUF1698) ND440_07380 PF13649 Methyltransferase domain ND440_07385 PF01124 MAPEG family ND440_07390 PF01904 Protein of unknown function DUF72 ND440_07400 PF00152 tRNA synthetases class II (D, K and N) ND440_07400 PF01336 OB-fold nucleic acid binding domain ND440_07400 PF02938 GAD domain ND440_07405 PF00293 NUDIX domain ND440_07410 PF01709 Transcriptional regulator ND440_07415 PF02075 Crossover junction endodeoxyribonuclease RuvC ND440_07420 PF01330 RuvA N terminal domain ND440_07420 PF07499 RuvA, C-terminal domain ND440_07425 PF17864 RuvB AAA lid domain ND440_07425 PF05491 RuvB C-terminal winged helix domain ND440_07425 PF05496 Holliday junction DNA helicase RuvB P-loop domain ND440_07430 PF00854 POT family ND440_07435 PF00950 ABC 3 transport family ND440_07440 PF00005 ABC transporter ND440_07445 PF01297 Zinc-uptake complex component A periplasmic ND440_07450 PF01476 LysM domain ND440_07450 PF08525 Opacity-associated protein A N-terminal motif ND440_07450 PF01551 Peptidase family M23 ND440_07455 PF03279 Bacterial lipid A biosynthesis acyltransferase ND440_07460 PF00224 Pyruvate kinase, barrel domain ND440_07460 PF02887 Pyruvate kinase, alpha/beta domain ND440_07465 PF01418 Helix-turn-helix domain, rpiR family ND440_07465 PF01380 SIS domain ND440_07470 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ND440_07470 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ND440_07475 PF01081 KDPG and KHG aldolase ND440_07480 PF00893 Small Multidrug Resistance protein ND440_07485 PF00893 Small Multidrug Resistance protein ND440_07490 PF01042 Endoribonuclease L-PSP ND440_07495 PF13307 Helicase C-terminal domain ND440_07495 PF04851 Type III restriction enzyme, res subunit ND440_07500 PF00814 Glycoprotease family ND440_07505 PF03843 Outer membrane lipoprotein Slp family ND440_07510 PF00501 AMP-binding enzyme ND440_07510 PF13193 AMP-binding enzyme C-terminal domain ND440_07515 PF01612 3'-5' exonuclease ND440_07515 PF00570 HRDC domain ND440_07520 PF03776 Septum formation topological specificity factor MinE ND440_07525 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ND440_07530 PF03775 Septum formation inhibitor MinC, C-terminal domain ND440_07530 PF05209 Septum formation inhibitor MinC, N-terminal domain ND440_07535 PF05166 YcgL domain ND440_07540 PF01557 Fumarylacetoacetate (FAA) hydrolase family ND440_07545 PF03692 Putative zinc- or iron-chelating domain ND440_07560 PF02600 Disulfide bond formation protein DsbB ND440_07565 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ND440_07570 PF00392 Bacterial regulatory proteins, gntR family ND440_07570 PF07840 FadR C-terminal domain ND440_07575 PF04293 SpoVR like protein ND440_07580 PF01266 FAD dependent oxidoreductase ND440_07585 PF00842 Alanine racemase, C-terminal domain ND440_07585 PF01168 Alanine racemase, N-terminal domain ND440_07590 PF07690 Major Facilitator Superfamily ND440_07600 PF00563 EAL domain ND440_07600 PF00990 Diguanylate cyclase, GGDEF domain ND440_07600 PF13426 PAS domain ND440_07605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_07605 PF03466 LysR substrate binding domain ND440_07610 PF03306 Alpha-acetolactate decarboxylase ND440_07615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND440_07615 PF00205 Thiamine pyrophosphate enzyme, central domain ND440_07615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND440_07620 PF04285 Protein of unknown function (DUF444) ND440_07625 PF08298 PrkA AAA domain ND440_07625 PF06798 PrkA serine protein kinase C-terminal domain ND440_07635 PF06629 MltA-interacting protein MipA ND440_07640 PF00884 Sulfatase ND440_07645 PF01263 Aldose 1-epimerase ND440_07650 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND440_07650 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND440_07655 PF01641 SelR domain ND440_07660 PF07023 Protein of unknown function (DUF1315) ND440_07665 PF00857 Isochorismatase family ND440_07670 PF17763 Glutaminase/Asparaginase C-terminal domain ND440_07670 PF00710 Asparaginase, N-terminal ND440_07675 PF01343 Peptidase family S49 ND440_07680 PF00881 Nitroreductase family ND440_07685 PF02769 AIR synthase related protein, C-terminal domain ND440_07685 PF00586 AIR synthase related protein, N-terminal domain ND440_07690 PF01751 Toprim domain ND440_07690 PF01131 DNA topoisomerase ND440_07695 PF07383 Protein of unknown function (DUF1496) ND440_07700 PF00293 NUDIX domain ND440_07705 PF03372 Endonuclease/Exonuclease/phosphatase family ND440_07715 PF03466 LysR substrate binding domain ND440_07715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_07740 PF01842 ACT domain ND440_07740 PF00551 Formyl transferase ND440_07745 PF02810 SEC-C motif ND440_07750 PF01734 Patatin-like phospholipase ND440_07755 PF00072 Response regulator receiver domain ND440_07760 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND440_07760 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND440_07760 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND440_07765 PF00816 H-NS histone family ND440_07770 PF00265 Thymidine kinase ND440_07775 PF00171 Aldehyde dehydrogenase family ND440_07775 PF00465 Iron-containing alcohol dehydrogenase ND440_07785 PF01914 MarC family integral membrane protein ND440_07790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND440_07795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND440_07800 PF00528 Binding-protein-dependent transport system inner membrane component ND440_07805 PF00528 Binding-protein-dependent transport system inner membrane component ND440_07805 PF12911 N-terminal TM domain of oligopeptide transport permease C ND440_07810 PF00005 ABC transporter ND440_07810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND440_07815 PF00005 ABC transporter ND440_07815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND440_07820 PF04269 Protein of unknown function, DUF440 ND440_07825 PF13396 Phospholipase_D-nuclease N-terminal ND440_07825 PF13091 PLD-like domain ND440_07845 PF03795 YCII-related domain ND440_07860 PF00486 Transcriptional regulatory protein, C terminal ND440_07870 PF02753 Pili assembly chaperone PapD, C-terminal domain ND440_07870 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND440_07875 PF13953 PapC C-terminal domain ND440_07875 PF13954 PapC N-terminal domain ND440_07875 PF00577 Outer membrane usher protein ND440_07895 PF03544 Gram-negative bacterial TonB protein C-terminal ND440_07900 PF03061 Thioesterase superfamily ND440_07905 PF04279 Intracellular septation protein A ND440_07910 PF00916 Sulfate permease family ND440_07910 PF01740 STAS domain ND440_07920 PF03692 Putative zinc- or iron-chelating domain ND440_07925 PF03922 OmpW family ND440_07935 PF00290 Tryptophan synthase alpha chain ND440_07940 PF00291 Pyridoxal-phosphate dependent enzyme ND440_07945 PF00218 Indole-3-glycerol phosphate synthase ND440_07945 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ND440_07950 PF02885 Glycosyl transferase family, helical bundle domain ND440_07950 PF00591 Glycosyl transferase family, a/b domain ND440_07955 PF00117 Glutamine amidotransferase class-I ND440_07960 PF00425 chorismate binding enzyme ND440_07960 PF04715 Anthranilate synthase component I, N terminal region ND440_07965 PF02811 PHP domain ND440_07970 PF01300 Telomere recombination ND440_07975 PF00849 RNA pseudouridylate synthase ND440_07975 PF01479 S4 domain ND440_07980 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ND440_07985 PF00106 short chain dehydrogenase ND440_07990 PF08496 Peptidase family S49 N-terminal ND440_07990 PF01343 Peptidase family S49 ND440_07995 PF10692 Protein of unknown function (DUF2498) ND440_08000 PF01131 DNA topoisomerase ND440_08000 PF01751 Toprim domain ND440_08000 PF01396 Topoisomerase DNA binding C4 zinc finger ND440_08000 PF08272 Topoisomerase I zinc-ribbon-like ND440_08005 PF03466 LysR substrate binding domain ND440_08005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_08030 PF00694 Aconitase C-terminal domain ND440_08030 PF00330 Aconitase family (aconitate hydratase) ND440_08035 PF00925 GTP cyclohydrolase II ND440_08040 PF01569 PAP2 superfamily ND440_08045 PF06305 Lipopolysaccharide assembly protein A domain ND440_08050 PF18073 Rubredoxin metal binding domain ND440_08060 PF07338 Protein of unknown function (DUF1471) ND440_08065 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND440_08070 PF01253 Translation initiation factor SUI1 ND440_08075 PF05433 Glycine zipper 2TM domain ND440_08080 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND440_08085 PF00563 EAL domain ND440_08085 PF00990 Diguanylate cyclase, GGDEF domain ND440_08085 PF05231 MASE1 ND440_08085 PF08447 PAS fold ND440_08085 PF13426 PAS domain ND440_08085 PF08448 PAS fold ND440_08090 PF00773 RNB domain ND440_08090 PF08206 Ribonuclease B OB domain ND440_08090 PF00575 S1 RNA binding domain ND440_08095 PF00633 Helix-hairpin-helix motif ND440_08095 PF00730 HhH-GPD superfamily base excision DNA repair protein ND440_08095 PF10576 Iron-sulfur binding domain of endonuclease III ND440_08100 PF02508 Rnf-Nqr subunit, membrane protein ND440_08105 PF04205 FMN-binding domain ND440_08110 PF03116 NQR2, RnfD, RnfE family ND440_08115 PF12833 Helix-turn-helix domain ND440_08115 PF06445 GyrI-like small molecule binding domain ND440_08120 PF13375 RnfC Barrel sandwich hybrid domain ND440_08120 PF10531 SLBB domain ND440_08120 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND440_08120 PF13237 4Fe-4S dicluster domain ND440_08125 PF04060 Putative Fe-S cluster ND440_08130 PF02508 Rnf-Nqr subunit, membrane protein ND440_08135 PF10754 Protein of unknown function (DUF2569) ND440_08140 PF01268 Formate--tetrahydrofolate ligase ND440_08145 PF03848 Tellurite resistance protein TehB ND440_08145 PF09313 Domain of unknown function (DUF1971) ND440_08150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ND440_08150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND440_08155 PF13593 SBF-like CPA transporter family (DUF4137) ND440_08160 PF00962 Adenosine/AMP deaminase ND440_08165 PF06097 Bacterial protein of unknown function (DUF945) ND440_08170 PF01238 Phosphomannose isomerase type I ND440_08175 PF00206 Lyase ND440_08175 PF10415 Fumarase C C-terminus ND440_08180 PF05472 DNA replication terminus site-binding protein (Ter protein) ND440_08185 PF00480 ROK family ND440_08195 PF00654 Voltage gated chloride channel ND440_08200 PF06649 Protein of unknown function (DUF1161) ND440_08205 PF06932 Protein of unknown function (DUF1283) ND440_08210 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ND440_08215 PF00106 short chain dehydrogenase ND440_08220 PF01510 N-acetylmuramoyl-L-alanine amidase ND440_08240 PF01048 Phosphorylase superfamily ND440_08240 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ND440_08280 PF13419 Haloacid dehalogenase-like hydrolase ND440_08290 PF06445 GyrI-like small molecule binding domain ND440_08295 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ND440_08295 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND440_08300 PF13545 Crp-like helix-turn-helix domain ND440_08300 PF00027 Cyclic nucleotide-binding domain ND440_08305 PF00582 Universal stress protein family ND440_08315 PF08220 DeoR-like helix-turn-helix domain ND440_08315 PF00455 DeoR C terminal sensor domain ND440_08320 PF03611 PTS system sugar-specific permease component ND440_08325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND440_08330 PF00596 Class II Aldolase and Adducin N-terminal domain ND440_08335 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND440_08340 PF01261 Xylose isomerase-like TIM barrel ND440_08345 PF02233 NAD(P) transhydrogenase beta subunit ND440_08350 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ND440_08350 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ND440_08350 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ND440_08355 PF07338 Protein of unknown function (DUF1471) ND440_08360 PF13520 Amino acid permease ND440_08370 PF00072 Response regulator receiver domain ND440_08370 PF00486 Transcriptional regulatory protein, C terminal ND440_08375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_08375 PF00672 HAMP domain ND440_08375 PF00512 His Kinase A (phospho-acceptor) domain ND440_08380 PF00080 Copper/zinc superoxide dismutase (SODC) ND440_08390 PF12833 Helix-turn-helix domain ND440_08395 PF01161 Phosphatidylethanolamine-binding protein ND440_08405 PF00089 Trypsin ND440_08410 PF11898 Domain of unknown function (DUF3418) ND440_08410 PF04408 Helicase associated domain (HA2) ND440_08410 PF00271 Helicase conserved C-terminal domain ND440_08410 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ND440_08410 PF00270 DEAD/DEAH box helicase ND440_08415 PF02525 Flavodoxin-like fold ND440_08420 PF07027 Protein of unknown function (DUF1318) ND440_08425 PF13617 YnbE-like lipoprotein ND440_08435 PF11739 Dicarboxylate transport ND440_08440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND440_08440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND440_08445 PF03724 META domain ND440_08450 PF03891 Domain of unknown function (DUF333) ND440_08455 PF02308 MgtC family ND440_08460 PF00893 Small Multidrug Resistance protein ND440_08465 PF10371 Domain of unknown function ND440_08465 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ND440_08465 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ND440_08465 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ND440_08465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND440_08470 PF01171 PP-loop family ND440_08475 PF01544 CorA-like Mg2+ transporter protein ND440_08480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND440_08485 PF00246 Zinc carboxypeptidase ND440_08490 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ND440_08490 PF13378 Enolase C-terminal domain-like ND440_08495 PF08534 Redoxin ND440_08500 PF18024 Helix-turn-helix domain ND440_08500 PF00158 Sigma-54 interaction domain ND440_08505 PF09722 Protein of unknown function (DUF2384) ND440_08510 PF08808 RES domain ND440_08515 PF05128 Domain of unknown function (DUF697) ND440_08520 PF04317 YcjX-like family, DUF463 ND440_08525 PF09584 Phage shock protein PspD (Phageshock_PspD) ND440_08530 PF04024 PspC domain ND440_08535 PF06667 Phage shock protein B ND440_08540 PF04012 PspA/IM30 family ND440_08545 PF02954 Bacterial regulatory protein, Fis family ND440_08545 PF00158 Sigma-54 interaction domain ND440_08555 PF02917 Pertussis toxin, subunit 1 ND440_08560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND440_08565 PF00528 Binding-protein-dependent transport system inner membrane component ND440_08570 PF00528 Binding-protein-dependent transport system inner membrane component ND440_08570 PF12911 N-terminal TM domain of oligopeptide transport permease C ND440_08575 PF00005 ABC transporter ND440_08575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND440_08580 PF00005 ABC transporter ND440_08590 PF00854 POT family ND440_08600 PF00226 DnaJ domain ND440_08600 PF01556 DnaJ C terminal domain ND440_08610 PF04893 Yip1 domain ND440_08620 PF11656 YjbD family (DUF3811) ND440_08625 PF00043 Glutathione S-transferase, C-terminal domain ND440_08625 PF02798 Glutathione S-transferase, N-terminal domain ND440_08630 PF08543 Phosphomethylpyrimidine kinase ND440_08635 PF01479 S4 domain ND440_08635 PF00579 tRNA synthetases class I (W and Y) ND440_08640 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ND440_08640 PF01243 Pyridoxamine 5'-phosphate oxidase ND440_08645 PF03702 Anhydro-N-acetylmuramic acid kinase ND440_08650 PF05433 Glycine zipper 2TM domain ND440_08655 PF01047 MarR family ND440_08665 PF00248 Aldo/keto reductase family ND440_08670 PF06945 Protein of unknown function (DUF1289) ND440_08675 PF08019 Phosphoethanolamine transferase EptA/EptB ND440_08675 PF00884 Sulfatase ND440_08680 PF00440 Bacterial regulatory proteins, tetR family ND440_08680 PF16925 Tetracyclin repressor-like, C-terminal domain ND440_08685 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND440_08690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND440_08695 PF00929 Exonuclease ND440_08700 PF00462 Glutaredoxin ND440_08705 PF00877 NlpC/P60 family ND440_08710 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND440_08710 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND440_08720 PF00356 Bacterial regulatory proteins, lacI family ND440_08725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_08725 PF03466 LysR substrate binding domain ND440_08730 PF07690 Major Facilitator Superfamily ND440_08740 PF00677 Lumazine binding domain ND440_08745 PF01554 MatE ND440_08765 PF02887 Pyruvate kinase, alpha/beta domain ND440_08765 PF00224 Pyruvate kinase, barrel domain ND440_08770 PF04728 Lipoprotein leucine-zipper ND440_08775 PF17969 L,D-transpeptidase C-terminal domain ND440_08775 PF01476 LysM domain ND440_08775 PF03734 L,D-transpeptidase catalytic domain ND440_08780 PF02657 Fe-S metabolism associated domain ND440_08785 PF00266 Aminotransferase class-V ND440_08790 PF01458 Uncharacterized protein family (UPF0051) ND440_08795 PF00005 ABC transporter ND440_08800 PF01458 Uncharacterized protein family (UPF0051) ND440_08805 PF01521 Iron-sulphur cluster biosynthesis ND440_08810 PF03061 Thioesterase superfamily ND440_08815 PF02913 FAD linked oxidases, C-terminal domain ND440_08815 PF01565 FAD binding domain ND440_08815 PF13183 4Fe-4S dicluster domain ND440_08820 PF01594 AI-2E family transporter ND440_08830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ND440_08830 PF02896 PEP-utilising enzyme, TIM barrel domain ND440_08830 PF00391 PEP-utilising enzyme, mobile domain ND440_08835 PF03618 Kinase/pyrophosphorylase ND440_08840 PF00793 DAHP synthetase I family ND440_08845 PF10636 Hemin uptake protein hemP ND440_08850 PF07715 TonB-dependent Receptor Plug Domain ND440_08850 PF00593 TonB dependent receptor ND440_08855 PF05171 Haemin-degrading HemS.ChuX domain ND440_08860 PF01497 Periplasmic binding protein ND440_08865 PF01032 FecCD transport family ND440_08870 PF00005 ABC transporter ND440_08875 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ND440_08880 PF03099 Biotin/lipoate A/B protein ligase family ND440_08880 PF10437 Bacterial lipoate protein ligase C-terminus ND440_08885 PF00877 NlpC/P60 family ND440_08895 PF00892 EamA-like transporter family ND440_08900 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ND440_08905 PF01522 Polysaccharide deacetylase ND440_08910 PF01370 NAD dependent epimerase/dehydratase family ND440_08910 PF02911 Formyl transferase, C-terminal domain ND440_08910 PF00551 Formyl transferase ND440_08915 PF00535 Glycosyl transferase family 2 ND440_08920 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND440_08925 PF00005 ABC transporter ND440_08930 PF01032 FecCD transport family ND440_08935 PF00145 C-5 cytosine-specific DNA methylase ND440_08935 PF13411 MerR HTH family regulatory protein ND440_08940 PF09553 Eco47II restriction endonuclease ND440_08990 PF04606 Ogr/Delta-like zinc finger ND440_09000 PF00216 Bacterial DNA-binding protein ND440_09005 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ND440_09005 PF01588 Putative tRNA binding domain ND440_09005 PF03484 tRNA synthetase B5 domain ND440_09005 PF03147 Ferredoxin-fold anticodon binding domain ND440_09005 PF03483 B3/4 domain ND440_09010 PF01409 tRNA synthetases class II core domain (F) ND440_09010 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ND440_09015 PF00453 Ribosomal protein L20 ND440_09020 PF01632 Ribosomal protein L35 ND440_09025 PF00707 Translation initiation factor IF-3, C-terminal domain ND440_09025 PF05198 Translation initiation factor IF-3, N-terminal domain ND440_09030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND440_09030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND440_09030 PF03129 Anticodon binding domain ND440_09030 PF02824 TGS domain ND440_09060 PF01914 MarC family integral membrane protein ND440_09065 PF01464 Transglycosylase SLT domain ND440_09070 PF01297 Zinc-uptake complex component A periplasmic ND440_09075 PF00005 ABC transporter ND440_09080 PF00950 ABC 3 transport family ND440_09085 PF00950 ABC 3 transport family ND440_09090 PF03881 Fructosamine kinase ND440_09095 PF14002 YniB-like protein ND440_09100 PF13419 Haloacid dehalogenase-like hydrolase ND440_09105 PF04307 LexA-binding, inner membrane-associated putative hydrolase ND440_09110 PF00375 Sodium:dicarboxylate symporter family ND440_09115 PF01510 N-acetylmuramoyl-L-alanine amidase ND440_09120 PF09339 IclR helix-turn-helix domain ND440_09120 PF01614 Bacterial transcriptional regulator ND440_09125 PF07690 Major Facilitator Superfamily ND440_09135 PF01435 Peptidase family M48 ND440_09140 PF11818 C-terminal domain of tail specific protease (DUF3340) ND440_09140 PF00595 PDZ domain ND440_09140 PF03572 Peptidase family S41 ND440_09140 PF17804 Tail specific protease N-terminal domain ND440_09145 PF17516 ProQ C-terminal domain ND440_09145 PF04352 ProQ/FINO family ND440_09150 PF13185 GAF domain ND440_09155 PF04403 Paraquat-inducible protein A ND440_09160 PF02470 MlaD protein ND440_09165 PF00563 EAL domain ND440_09165 PF01590 GAF domain ND440_09165 PF00990 Diguanylate cyclase, GGDEF domain ND440_09165 PF00360 Phytochrome region ND440_09170 PF07351 Protein of unknown function (DUF1480) ND440_09195 PF05643 Putative bacterial lipoprotein (DUF799) ND440_09205 PF03783 Curli production assembly/transport component CsgG ND440_09210 PF10753 Toxin GhoT_OrtT ND440_09230 PF00144 Beta-lactamase ND440_09240 PF10709 Protein of unknown function (DUF2511) ND440_09245 PF05425 Copper resistance protein D ND440_09250 PF04234 CopC domain ND440_09255 PF00210 Ferritin-like domain ND440_09260 PF06440 DNA polymerase III, theta subunit ND440_09265 PF00561 alpha/beta hydrolase fold ND440_09270 PF00929 Exonuclease ND440_09275 PF00326 Prolyl oligopeptidase family ND440_09275 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ND440_09280 PF13995 YebF-like protein ND440_09285 PF04266 ASCH domain ND440_09290 PF07130 YebG protein ND440_09295 PF03880 DbpA RNA binding domain ND440_09295 PF00270 DEAD/DEAH box helicase ND440_09295 PF00271 Helicase conserved C-terminal domain ND440_09300 PF02222 ATP-grasp domain ND440_09305 PF03701 Uncharacterised protein family (UPF0181) ND440_09310 PF04715 Anthranilate synthase component I, N terminal region ND440_09310 PF00425 chorismate binding enzyme ND440_09315 PF00293 NUDIX domain ND440_09320 PF03315 Serine dehydratase beta chain ND440_09320 PF03313 Serine dehydratase alpha chain ND440_09325 PF03471 Transporter associated domain ND440_09325 PF03741 Integral membrane protein TerC family ND440_09330 PF03610 PTS system fructose IIA component ND440_09330 PF03830 PTS system sorbose subfamily IIB component ND440_09335 PF03609 PTS system sorbose-specific iic component ND440_09340 PF03613 PTS system mannose/fructose/sorbose family IID component ND440_09345 PF06173 Protein of unknown function (DUF986) ND440_09350 PF02659 Putative manganese efflux pump ND440_09355 PF02441 Flavoprotein ND440_09370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND440_09370 PF02770 Acyl-CoA dehydrogenase, middle domain ND440_09370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND440_09380 PF05199 GMC oxidoreductase ND440_09380 PF00732 GMC oxidoreductase ND440_09385 PF00501 AMP-binding enzyme ND440_09385 PF13193 AMP-binding enzyme C-terminal domain ND440_09385 PF00668 Condensation domain ND440_09385 PF00550 Phosphopantetheine attachment site ND440_09390 PF07690 Major Facilitator Superfamily ND440_09410 PF13847 Methyltransferase domain ND440_09415 PF03717 Penicillin-binding Protein dimerisation domain ND440_09415 PF00905 Penicillin binding protein transpeptidase domain ND440_09420 PF02578 Multi-copper polyphenol oxidoreductase laccase ND440_09425 PF00313 'Cold-shock' DNA-binding domain ND440_09430 PF10736 Protein of unknown function (DUF2627) ND440_09435 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ND440_09440 PF00324 Amino acid permease ND440_09455 PF13974 YebO-like protein ND440_09460 PF13998 MgrB protein ND440_09465 PF13996 YobH-like protein ND440_09470 PF10964 Protein of unknown function (DUF2766) ND440_09475 PF12833 Helix-turn-helix domain ND440_09490 PF13520 Amino acid permease ND440_09495 PF00664 ABC transporter transmembrane region ND440_09495 PF00005 ABC transporter ND440_09505 PF00360 Phytochrome region ND440_09505 PF00990 Diguanylate cyclase, GGDEF domain ND440_09505 PF01590 GAF domain ND440_09505 PF00563 EAL domain ND440_09510 PF03372 Endonuclease/Exonuclease/phosphatase family ND440_09520 PF06411 HdeA/HdeB family ND440_09525 PF07478 D-ala D-ala ligase C-terminus ND440_09525 PF01820 D-ala D-ala ligase N-terminus ND440_09540 PF08241 Methyltransferase domain ND440_09545 PF00313 'Cold-shock' DNA-binding domain ND440_09550 PF00313 'Cold-shock' DNA-binding domain ND440_09555 PF00313 'Cold-shock' DNA-binding domain ND440_09565 PF04794 YdjC-like protein ND440_09570 PF07883 Cupin domain ND440_09570 PF12833 Helix-turn-helix domain ND440_09575 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ND440_09580 PF00232 Glycosyl hydrolase family 1 ND440_09585 PF02378 Phosphotransferase system, EIIC ND440_09590 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND440_09595 PF01479 S4 domain ND440_09595 PF00849 RNA pseudouridylate synthase ND440_09605 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ND440_09610 PF03553 Na+/H+ antiporter family ND440_09620 PF13520 Amino acid permease ND440_09635 PF00849 RNA pseudouridylate synthase ND440_09640 PF00282 Pyridoxal-dependent decarboxylase conserved domain ND440_09645 PF13520 Amino acid permease ND440_09650 PF04960 Glutaminase ND440_09680 PF13673 Acetyltransferase (GNAT) domain ND440_09690 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ND440_09690 PF00034 Cytochrome c ND440_09700 PF00528 Binding-protein-dependent transport system inner membrane component ND440_09705 PF00005 ABC transporter ND440_09715 PF00672 HAMP domain ND440_09715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND440_09715 PF02203 Tar ligand binding domain homologue ND440_09720 PF13276 HTH-like domain ND440_09720 PF00665 Integrase core domain ND440_09720 PF13333 Integrase core domain ND440_09775 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND440_09780 PF05840 Bacteriophage replication gene A protein (GPA) ND440_09785 PF05840 Bacteriophage replication gene A protein (GPA) ND440_09845 PF01066 CDP-alcohol phosphatidyltransferase ND440_09850 PF01541 GIY-YIG catalytic domain ND440_09850 PF08459 UvrC Helix-hairpin-helix N-terminal ND440_09850 PF02151 UvrB/uvrC motif ND440_09855 PF00196 Bacterial regulatory proteins, luxR family ND440_09855 PF00072 Response regulator receiver domain ND440_09860 PF10769 Protein of unknown function (DUF2594) ND440_09880 PF00324 Amino acid permease ND440_09885 PF01276 Orn/Lys/Arg decarboxylase, major domain ND440_09885 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND440_09885 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND440_09890 PF13520 Amino acid permease ND440_09895 PF18500 CadC C-terminal domain 1 ND440_09895 PF00486 Transcriptional regulatory protein, C terminal ND440_09900 PF00474 Sodium:solute symporter family ND440_09905 PF00171 Aldehyde dehydrogenase family ND440_09905 PF01619 Proline dehydrogenase ND440_09905 PF14850 DNA-binding domain of Proline dehydrogenase ND440_09905 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ND440_09910 PF00005 ABC transporter ND440_09915 PF00528 Binding-protein-dependent transport system inner membrane component ND440_09920 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND440_09925 PF00291 Pyridoxal-phosphate dependent enzyme ND440_09930 PF02899 Phage integrase, N-terminal SAM-like domain ND440_09935 PF04542 Sigma-70 region 2 ND440_09935 PF04539 Sigma-70 region 3 ND440_09935 PF04545 Sigma-70, region 4 ND440_09940 PF00700 Bacterial flagellin C-terminal helical region ND440_09940 PF08884 Flagellin D3 domain ND440_09940 PF00669 Bacterial flagellin N-terminal helical region ND440_09945 PF00669 Bacterial flagellin N-terminal helical region ND440_09945 PF00700 Bacterial flagellin C-terminal helical region ND440_09945 PF08884 Flagellin D3 domain ND440_09950 PF00669 Bacterial flagellin N-terminal helical region ND440_09950 PF00700 Bacterial flagellin C-terminal helical region ND440_09950 PF08884 Flagellin D3 domain ND440_09955 PF07196 Flagellin hook IN motif ND440_09955 PF02465 Flagellar hook-associated protein 2 N-terminus ND440_09955 PF07195 Flagellar hook-associated protein 2 C-terminus ND440_09960 PF02561 Flagellar protein FliS ND440_09965 PF05400 Flagellar protein FliT ND440_09970 PF12833 Helix-turn-helix domain ND440_09975 PF01966 HD domain ND440_09980 PF07885 Ion channel ND440_09980 PF02254 TrkA-N domain ND440_09985 PF01223 DNA/RNA non-specific endonuclease ND440_09995 PF02049 Flagellar hook-basal body complex protein FliE ND440_10000 PF01514 Secretory protein of YscJ/FliF family ND440_10000 PF08345 Flagellar M-ring protein C-terminal ND440_10005 PF01706 FliG C-terminal domain ND440_10005 PF14841 FliG middle domain ND440_10005 PF14842 FliG N-terminal domain ND440_10010 PF02108 Flagellar assembly protein FliH ND440_10015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND440_10015 PF18269 T3SS EscN ATPase C-terminal domain ND440_10020 PF02050 Flagellar FliJ protein ND440_10025 PF02120 Flagellar hook-length control protein FliK ND440_10030 PF03748 Flagellar basal body-associated protein FliL ND440_10035 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND440_10035 PF02154 Flagellar motor switch protein FliM ND440_10040 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND440_10040 PF16973 Flagellar motor switch protein FliN N-terminal ND440_10045 PF04347 Flagellar biosynthesis protein, FliO ND440_10050 PF00813 FliP family ND440_10055 PF01313 Bacterial export proteins, family 3 ND440_10060 PF01311 Bacterial export proteins, family 1 ND440_10065 PF00669 Bacterial flagellin N-terminal helical region ND440_10070 PF00460 Flagella basal body rod protein ND440_10070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND440_10075 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ND440_10075 PF10135 Rod binding protein ND440_10080 PF02119 Flagellar P-ring protein ND440_10085 PF02107 Flagellar L-ring protein ND440_10090 PF00460 Flagella basal body rod protein ND440_10090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND440_10095 PF00460 Flagella basal body rod protein ND440_10095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND440_10100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND440_10100 PF07559 Flagellar basal body protein FlaE ND440_10100 PF00460 Flagella basal body rod protein ND440_10105 PF13860 FlgD Ig-like domain ND440_10105 PF03963 Flagellar hook capping protein - N-terminal region ND440_10105 PF13861 FlgD Tudor-like domain ND440_10110 PF00460 Flagella basal body rod protein ND440_10110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND440_10115 PF00460 Flagella basal body rod protein ND440_10120 PF17656 FlgA N-terminal domain ND440_10120 PF13144 Chaperone for flagella basal body P-ring formation ND440_10125 PF04316 Anti-sigma-28 factor, FlgM ND440_10130 PF05130 FlgN protein ND440_10135 PF06366 Flagellar protein FlhE ND440_10140 PF00771 FHIPEP family ND440_10145 PF01312 FlhB HrpN YscU SpaS Family ND440_10150 PF01483 Proprotein convertase P-domain ND440_10150 PF00082 Subtilase family ND440_10155 PF04344 Chemotaxis phosphatase, CheZ ND440_10160 PF00072 Response regulator receiver domain ND440_10165 PF01339 CheB methylesterase ND440_10165 PF00072 Response regulator receiver domain ND440_10170 PF01739 CheR methyltransferase, SAM binding domain ND440_10170 PF03705 CheR methyltransferase, all-alpha domain ND440_10175 PF00672 HAMP domain ND440_10175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND440_10175 PF02203 Tar ligand binding domain homologue ND440_10180 PF00672 HAMP domain ND440_10180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND440_10180 PF02203 Tar ligand binding domain homologue ND440_10185 PF01584 CheW-like domain ND440_10190 PF01584 CheW-like domain ND440_10190 PF09078 CheY binding ND440_10190 PF02895 Signal transducing histidine kinase, homodimeric domain ND440_10190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_10190 PF01627 Hpt domain ND440_10195 PF13677 Membrane MotB of proton-channel complex MotA/MotB ND440_10195 PF00691 OmpA family ND440_10200 PF01618 MotA/TolQ/ExbB proton channel family ND440_10205 PF05280 Flagellar transcriptional activator (FlhC) ND440_10210 PF05247 Flagellar transcriptional activator (FlhD) ND440_10215 PF00582 Universal stress protein family ND440_10220 PF02308 MgtC family ND440_10225 PF00672 HAMP domain ND440_10225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND440_10225 PF02203 Tar ligand binding domain homologue ND440_10230 PF10781 Dextransucrase DSRB ND440_10235 PF00313 'Cold-shock' DNA-binding domain ND440_10240 PF00356 Bacterial regulatory proteins, lacI family ND440_10245 PF16353 Domain of unknown function(DUF4981) ND440_10245 PF00703 Glycosyl hydrolases family 2 ND440_10245 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND440_10245 PF02929 Beta galactosidase small chain ND440_10245 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND440_10250 PF00698 Acyl transferase domain ND440_10250 PF08240 Alcohol dehydrogenase GroES-like domain ND440_10250 PF00107 Zinc-binding dehydrogenase ND440_10250 PF16197 Ketoacyl-synthetase C-terminal extension ND440_10250 PF00109 Beta-ketoacyl synthase, N-terminal domain ND440_10250 PF08659 KR domain ND440_10250 PF00550 Phosphopantetheine attachment site ND440_10250 PF14765 Polyketide synthase dehydratase ND440_10250 PF02801 Beta-ketoacyl synthase, C-terminal domain ND440_10255 PF10777 Inner membrane protein YlaC ND440_10270 PF14001 YdfZ protein ND440_10280 PF06167 Glucose-regulated metallo-peptidase M90 ND440_10300 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ND440_10300 PF01648 4'-phosphopantetheinyl transferase superfamily ND440_10305 PF00939 Sodium:sulfate symporter transmembrane region ND440_10310 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ND440_10315 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase ND440_10320 PF04223 Citrate lyase, alpha subunit (CitF) ND440_10325 PF03328 HpcH/HpaI aldolase/citrate lyase family ND440_10330 PF06857 Malonate decarboxylase delta subunit (MdcD) ND440_10335 PF08218 Citrate lyase ligase C-terminal domain ND440_10340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_10340 PF17203 Single cache domain 3 ND440_10340 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND440_10340 PF00989 PAS fold ND440_10345 PF00072 Response regulator receiver domain ND440_10345 PF12431 Transcriptional regulator ND440_10350 PF00196 Bacterial regulatory proteins, luxR family ND440_10350 PF00072 Response regulator receiver domain ND440_10355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_10355 PF07730 Histidine kinase ND440_10355 PF05231 MASE1 ND440_10360 PF07690 Major Facilitator Superfamily ND440_10370 PF00528 Binding-protein-dependent transport system inner membrane component ND440_10375 PF00005 ABC transporter ND440_10375 PF08402 TOBE domain ND440_10390 PF04363 Protein of unknown function (DUF496) ND440_10395 PF04632 Fusaric acid resistance protein family ND440_10405 PF08411 Exonuclease C-terminal ND440_10405 PF00929 Exonuclease ND440_10410 PF13520 Amino acid permease ND440_10415 PF07715 TonB-dependent Receptor Plug Domain ND440_10415 PF00593 TonB dependent receptor ND440_10420 PF00005 ABC transporter ND440_10425 PF01032 FecCD transport family ND440_10435 PF00324 Amino acid permease ND440_10440 PF03466 LysR substrate binding domain ND440_10440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_10450 PF03601 Conserved hypothetical protein 698 ND440_10455 PF01261 Xylose isomerase-like TIM barrel ND440_10460 PF02378 Phosphotransferase system, EIIC ND440_10460 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND440_10465 PF00294 pfkB family carbohydrate kinase ND440_10470 PF00381 PTS HPr component phosphorylation site ND440_10470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND440_10475 PF00293 NUDIX domain ND440_10480 PF03264 NapC/NirT cytochrome c family, N-terminal region ND440_10485 PF00384 Molybdopterin oxidoreductase ND440_10485 PF18364 Molybdopterin oxidoreductase N-terminal domain ND440_10485 PF01568 Molydopterin dinucleotide binding domain ND440_10490 PF03692 Putative zinc- or iron-chelating domain ND440_10495 PF03222 Tryptophan/tyrosine permease family ND440_10500 PF08207 Elongation factor P (EF-P) KOW-like domain ND440_10500 PF09285 Elongation factor P, C-terminal ND440_10500 PF01132 Elongation factor P (EF-P) OB domain ND440_10505 PF03786 D-mannonate dehydratase (UxuA) ND440_10510 PF01232 Mannitol dehydrogenase Rossmann domain ND440_10510 PF08125 Mannitol dehydrogenase C-terminal domain ND440_10520 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND440_10520 PF07683 Cobalamin synthesis protein cobW C-terminal domain ND440_10525 PF01569 PAP2 superfamily ND440_10530 PF00877 NlpC/P60 family ND440_10535 PF12792 CSS motif domain associated with EAL ND440_10535 PF00563 EAL domain ND440_10540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND440_10545 PF00528 Binding-protein-dependent transport system inner membrane component ND440_10550 PF00528 Binding-protein-dependent transport system inner membrane component ND440_10550 PF12911 N-terminal TM domain of oligopeptide transport permease C ND440_10555 PF00005 ABC transporter ND440_10555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND440_10560 PF13989 YejG-like protein ND440_10565 PF07690 Major Facilitator Superfamily ND440_10570 PF00849 RNA pseudouridylate synthase ND440_10570 PF01479 S4 domain ND440_10575 PF04851 Type III restriction enzyme, res subunit ND440_10575 PF00271 Helicase conserved C-terminal domain ND440_10580 PF01386 Ribosomal L25p family ND440_10585 PF04245 37-kD nucleoid-associated bacterial protein ND440_10590 PF07208 Protein of unknown function (DUF1414) ND440_10595 PF00884 Sulfatase ND440_10595 PF11893 Domain of unknown function (DUF3413) ND440_10610 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND440_10620 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) ND440_10625 PF04865 Baseplate J-like protein ND440_10670 PF17482 Phage tail sheath C-terminal domain ND440_10670 PF04984 Phage tail sheath protein subtilisin-like domain ND440_10720 PF03354 Phage Terminase ND440_10740 PF03245 Bacteriophage Rz lysis protein ND440_10745 PF13539 D-alanyl-D-alanine carboxypeptidase ND440_10775 PF03793 PASTA domain ND440_10775 PF00069 Protein kinase domain ND440_10780 PF01555 DNA methylase ND440_10790 PF06147 Protein of unknown function (DUF968) ND440_10805 PF05869 DNA N-6-adenine-methyltransferase (Dam) ND440_10810 PF03354 Phage Terminase ND440_10845 PF10065 Uncharacterized conserved protein (DUF2303) ND440_10890 PF06183 DinI-like family ND440_10895 PF12706 Beta-lactamase superfamily domain ND440_10900 PF00144 Beta-lactamase ND440_10905 PF13302 Acetyltransferase (GNAT) domain ND440_10920 PF00267 Gram-negative porin ND440_10925 PF07690 Major Facilitator Superfamily ND440_10930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_10930 PF01627 Hpt domain ND440_10930 PF16359 RcsD-ABL domain ND440_10935 PF00196 Bacterial regulatory proteins, luxR family ND440_10935 PF00072 Response regulator receiver domain ND440_10940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_10940 PF09456 RcsC Alpha-Beta-Loop (ABL) ND440_10940 PF00072 Response regulator receiver domain ND440_10940 PF00512 His Kinase A (phospho-acceptor) domain ND440_10945 PF00521 DNA gyrase/topoisomerase IV, subunit A ND440_10945 PF03989 DNA gyrase C-terminal domain, beta-propeller ND440_10955 PF02867 Ribonucleotide reductase, barrel domain ND440_10955 PF03477 ATP cone domain ND440_10955 PF00317 Ribonucleotide reductase, all-alpha domain ND440_10960 PF00268 Ribonucleotide reductase, small chain ND440_10965 PF00111 2Fe-2S iron-sulfur cluster binding domain ND440_10975 PF03974 Ecotin ND440_10980 PF00994 Probable molybdopterin binding domain ND440_10985 PF04138 GtrA-like protein ND440_10990 PF00535 Glycosyl transferase family 2 ND440_11000 PF03222 Tryptophan/tyrosine permease family ND440_11005 PF07437 YfaZ precursor ND440_11010 PF00199 Catalase ND440_11010 PF06628 Catalase-related immune-responsive ND440_11015 PF13193 AMP-binding enzyme C-terminal domain ND440_11015 PF00501 AMP-binding enzyme ND440_11020 PF13378 Enolase C-terminal domain-like ND440_11025 PF00378 Enoyl-CoA hydratase/isomerase ND440_11030 PF12697 Alpha/beta hydrolase family ND440_11035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND440_11035 PF16582 Middle domain of thiamine pyrophosphate ND440_11035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND440_11040 PF00425 chorismate binding enzyme ND440_11045 PF05957 Bacterial protein of unknown function (DUF883) ND440_11050 PF06496 Protein of unknown function (DUF1097) ND440_11055 PF00361 Proton-conducting membrane transporter ND440_11060 PF00361 Proton-conducting membrane transporter ND440_11065 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ND440_11065 PF00361 Proton-conducting membrane transporter ND440_11070 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ND440_11075 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ND440_11080 PF12838 4Fe-4S dicluster domain ND440_11085 PF00146 NADH dehydrogenase ND440_11090 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ND440_11090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND440_11090 PF01568 Molydopterin dinucleotide binding domain ND440_11090 PF00384 Molybdopterin oxidoreductase ND440_11095 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND440_11095 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ND440_11095 PF10531 SLBB domain ND440_11105 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND440_11105 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND440_11110 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND440_11115 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ND440_11120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_11120 PF03466 LysR substrate binding domain ND440_11125 PF00155 Aminotransferase class I and II ND440_11135 PF03600 Citrate transporter ND440_11135 PF02080 TrkA-C domain ND440_11145 PF03887 YfbU domain ND440_11150 PF04217 Protein of unknown function, DUF412 ND440_11155 PF00871 Acetokinase family ND440_11160 PF07085 DRTGG domain ND440_11160 PF01515 Phosphate acetyl/butaryl transferase ND440_11165 PF00356 Bacterial regulatory proteins, lacI family ND440_11165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND440_11170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND440_11180 PF03611 PTS system sugar-specific permease component ND440_11185 PF00293 NUDIX domain ND440_11190 PF12850 Calcineurin-like phosphoesterase superfamily domain ND440_11200 PF00043 Glutathione S-transferase, C-terminal domain ND440_11200 PF02798 Glutathione S-transferase, N-terminal domain ND440_11205 PF08338 Domain of unknown function (DUF1731) ND440_11205 PF01370 NAD dependent epimerase/dehydratase family ND440_11210 PF00005 ABC transporter ND440_11215 PF00528 Binding-protein-dependent transport system inner membrane component ND440_11220 PF00528 Binding-protein-dependent transport system inner membrane component ND440_11225 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND440_11235 PF02441 Flavoprotein ND440_11240 PF00156 Phosphoribosyl transferase domain ND440_11245 PF02674 Colicin V production protein ND440_11250 PF05036 Sporulation related domain ND440_11255 PF02875 Mur ligase family, glutamate ligase domain ND440_11255 PF08245 Mur ligase middle domain ND440_11260 PF01039 Carboxyl transferase domain ND440_11260 PF17848 Acetyl-coA carboxylase zinc finger domain ND440_11265 PF09335 SNARE associated Golgi protein ND440_11270 PF01416 tRNA pseudouridine synthase ND440_11275 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND440_11275 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND440_11280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND440_11280 PF11890 Domain of unknown function (DUF3410) ND440_11280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND440_11300 PF00155 Aminotransferase class I and II ND440_11305 PF00578 AhpC/TSA family ND440_11335 PF02801 Beta-ketoacyl synthase, C-terminal domain ND440_11335 PF00109 Beta-ketoacyl synthase, N-terminal domain ND440_11340 PF01266 FAD dependent oxidoreductase ND440_11340 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ND440_11345 PF08891 YfcL protein ND440_11350 PF04315 Elongation factor P hydroxylase ND440_11355 PF01925 Sulfite exporter TauE/SafE ND440_11360 PF03411 Penicillin-insensitive murein endopeptidase ND440_11365 PF01264 Chorismate synthase ND440_11370 PF05175 Methyltransferase small domain ND440_11375 PF01713 Smr domain ND440_11380 PF00300 Histidine phosphatase superfamily (branch 1) ND440_11385 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND440_11385 PF00378 Enoyl-CoA hydratase/isomerase ND440_11385 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND440_11390 PF02803 Thiolase, C-terminal domain ND440_11390 PF00108 Thiolase, N-terminal domain ND440_11395 PF04175 Protein of unknown function (DUF406) ND440_11400 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ND440_11405 PF04333 MlaA lipoprotein ND440_11410 PF03918 Cytochrome C biogenesis protein ND440_11415 PF03918 Cytochrome C biogenesis protein ND440_11420 PF08534 Redoxin ND440_11425 PF01578 Cytochrome C assembly protein ND440_11425 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ND440_11430 PF03100 CcmE ND440_11435 PF04995 Heme exporter protein D (CcmD) ND440_11440 PF01578 Cytochrome C assembly protein ND440_11445 PF03379 CcmB protein ND440_11450 PF00005 ABC transporter ND440_11465 PF03831 PhnA domain ND440_11465 PF08274 PhnA Zinc-Ribbon ND440_11470 PF13406 Transglycosylase SLT domain ND440_11485 PF01292 Prokaryotic cytochrome b561 ND440_11505 PF07350 Protein of unknown function (DUF1479) ND440_11510 PF06580 Histidine kinase ND440_11510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_11510 PF07694 5TMR of 5TMR-LYT ND440_11515 PF00072 Response regulator receiver domain ND440_11515 PF04397 LytTr DNA-binding domain ND440_11520 PF07690 Major Facilitator Superfamily ND440_11525 PF02685 Glucokinase ND440_11535 PF03466 LysR substrate binding domain ND440_11535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_11545 PF01566 Natural resistance-associated macrophage protein ND440_11550 PF07670 Nucleoside recognition ND440_11550 PF07662 Na+ dependent nucleoside transporter C-terminus ND440_11550 PF01773 Na+ dependent nucleoside transporter N-terminus ND440_11595 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND440_11620 PF12843 Putative quorum-sensing-regulated virulence factor ND440_11625 PF12826 Helix-hairpin-helix motif ND440_11625 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ND440_11625 PF01653 NAD-dependent DNA ligase adenylation domain ND440_11625 PF03120 NAD-dependent DNA ligase OB-fold domain ND440_11625 PF00533 BRCA1 C Terminus (BRCT) domain ND440_11630 PF04354 ZipA, C-terminal FtsZ-binding domain ND440_11640 PF00291 Pyridoxal-phosphate dependent enzyme ND440_11645 PF00381 PTS HPr component phosphorylation site ND440_11650 PF05524 PEP-utilising enzyme, N-terminal ND440_11650 PF00391 PEP-utilising enzyme, mobile domain ND440_11650 PF02896 PEP-utilising enzyme, TIM barrel domain ND440_11655 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND440_11660 PF00291 Pyridoxal-phosphate dependent enzyme ND440_11665 PF00005 ABC transporter ND440_11670 PF00528 Binding-protein-dependent transport system inner membrane component ND440_11675 PF00528 Binding-protein-dependent transport system inner membrane component ND440_11685 PF07690 Major Facilitator Superfamily ND440_11690 PF01418 Helix-turn-helix domain, rpiR family ND440_11690 PF01380 SIS domain ND440_11695 PF04074 YhcH/YjgK/YiaL ND440_11700 PF00480 ROK family ND440_11705 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ND440_11710 PF00701 Dihydrodipicolinate synthetase family ND440_11715 PF04261 Dyp-type peroxidase family ND440_11720 PF06572 Protein of unknown function (DUF1131) ND440_11725 PF04076 Bacterial OB fold (BOF) protein ND440_11810 PF00583 Acetyltransferase (GNAT) family ND440_11815 PF01218 Coproporphyrinogen III oxidase ND440_11820 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ND440_11825 PF00390 Malic enzyme, N-terminal domain ND440_11825 PF03949 Malic enzyme, NAD binding domain ND440_11825 PF01515 Phosphate acetyl/butaryl transferase ND440_11835 PF03264 NapC/NirT cytochrome c family, N-terminal region ND440_11840 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ND440_11845 PF00384 Molybdopterin oxidoreductase ND440_11845 PF01568 Molydopterin dinucleotide binding domain ND440_11845 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND440_11845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND440_11850 PF03927 NapD protein ND440_11855 PF00037 4Fe-4S binding domain ND440_11855 PF12800 4Fe-4S binding domain ND440_11855 PF13187 4Fe-4S dicluster domain ND440_11860 PF00196 Bacterial regulatory proteins, luxR family ND440_11860 PF00072 Response regulator receiver domain ND440_11870 PF00873 AcrB/AcrD/AcrF family ND440_11880 PF01817 Chorismate mutase type II ND440_11885 PF03960 ArsC family ND440_11890 PF07687 Peptidase dimerisation domain ND440_11890 PF01546 Peptidase family M20/M25/M40 ND440_11895 PF02557 D-alanyl-D-alanine carboxypeptidase ND440_11900 PF13980 Uncharacterised protein family (UPF0370) ND440_11905 PF02230 Phospholipase/Carboxylesterase ND440_11910 PF08351 Domain of unknown function (DUF1726) ND440_11910 PF13718 GNAT acetyltransferase 2 ND440_11910 PF17176 tRNA-binding domain ND440_11910 PF05127 Helicase ND440_11915 PF04284 Protein of unknown function (DUF441) ND440_11920 PF01259 SAICAR synthetase ND440_11925 PF06804 NlpB/DapX lipoprotein ND440_11930 PF00701 Dihydrodipicolinate synthetase family ND440_11935 PF01842 ACT domain ND440_11940 PF00578 AhpC/TSA family ND440_11945 PF01594 AI-2E family transporter ND440_11950 PF07720 Tetratricopeptide repeat ND440_11950 PF01435 Peptidase family M48 ND440_11955 PF03960 ArsC family ND440_11960 PF00308 Bacterial dnaA protein ND440_11965 PF00860 Permease family ND440_11975 PF00586 AIR synthase related protein, N-terminal domain ND440_11975 PF02769 AIR synthase related protein, C-terminal domain ND440_11980 PF00551 Formyl transferase ND440_11985 PF13302 Acetyltransferase (GNAT) domain ND440_11990 PF00005 ABC transporter ND440_11995 PF00528 Binding-protein-dependent transport system inner membrane component ND440_12000 PF00528 Binding-protein-dependent transport system inner membrane component ND440_12005 PF02503 Polyphosphate kinase middle domain ND440_12005 PF13090 Polyphosphate kinase C-terminal domain 2 ND440_12005 PF17941 Polyphosphate kinase C-terminal domain 1 ND440_12005 PF13089 Polyphosphate kinase N-terminal domain ND440_12010 PF02541 Ppx/GppA phosphatase family ND440_12020 PF03448 MgtE intracellular N domain ND440_12020 PF01769 Divalent cation transporter ND440_12020 PF00571 CBS domain ND440_12025 PF00012 Hsp70 protein ND440_12035 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND440_12035 PF02753 Pili assembly chaperone PapD, C-terminal domain ND440_12040 PF13953 PapC C-terminal domain ND440_12040 PF13954 PapC N-terminal domain ND440_12040 PF00577 Outer membrane usher protein ND440_12050 PF13533 Biotin-lipoyl like ND440_12055 PF00873 AcrB/AcrD/AcrF family ND440_12060 PF00873 AcrB/AcrD/AcrF family ND440_12065 PF07690 Major Facilitator Superfamily ND440_12070 PF00672 HAMP domain ND440_12070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_12070 PF00512 His Kinase A (phospho-acceptor) domain ND440_12075 PF00486 Transcriptional regulatory protein, C terminal ND440_12075 PF00072 Response regulator receiver domain ND440_12080 PF07411 Domain of unknown function (DUF1508) ND440_12085 PF16325 Peptidase family U32 C-terminal domain ND440_12085 PF01136 Peptidase family U32 ND440_12090 PF00781 Diacylglycerol kinase catalytic domain ND440_12105 PF08543 Phosphomethylpyrimidine kinase ND440_12115 PF00958 GMP synthase C terminal domain ND440_12115 PF00117 Glutamine amidotransferase class-I ND440_12115 PF02540 NAD synthase ND440_12120 PF00478 IMP dehydrogenase / GMP reductase domain ND440_12120 PF00571 CBS domain ND440_12125 PF02601 Exonuclease VII, large subunit ND440_12125 PF13742 OB-fold nucleic acid binding domain ND440_12130 PF07191 zinc-ribbons ND440_12135 PF01926 50S ribosome-binding GTPase ND440_12135 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ND440_12140 PF13360 PQQ-like domain ND440_12145 PF09976 Tetratricopeptide repeat-like domain ND440_12150 PF13393 Histidyl-tRNA synthetase ND440_12150 PF03129 Anticodon binding domain ND440_12155 PF04551 GcpE protein ND440_12160 PF13464 Domain of unknown function (DUF4115) ND440_12170 PF04055 Radical SAM superfamily ND440_12175 PF00334 Nucleoside diphosphate kinase ND440_12185 PF00905 Penicillin binding protein transpeptidase domain ND440_12185 PF00912 Transglycosylase ND440_12185 PF06832 Penicillin-Binding Protein C-terminus Family ND440_12190 PF07703 Alpha-2-macroglobulin bait region domain ND440_12190 PF00207 Alpha-2-macroglobulin family ND440_12190 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ND440_12190 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ND440_12190 PF17962 Bacterial macroglobulin domain 6 ND440_12190 PF01835 MG2 domain ND440_12190 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain ND440_12190 PF07678 A-macroglobulin TED domain ND440_12190 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ND440_12195 PF14581 SseB protein C-terminal domain ND440_12195 PF07179 SseB protein N-terminal domain ND440_12200 PF12404 Peptidase ND440_12200 PF00883 Cytosol aminopeptidase family, catalytic domain ND440_12205 PF04384 Iron-sulphur cluster assembly ND440_12210 PF00111 2Fe-2S iron-sulfur cluster binding domain ND440_12215 PF00012 Hsp70 protein ND440_12220 PF00226 DnaJ domain ND440_12220 PF07743 HSCB C-terminal oligomerisation domain ND440_12225 PF01521 Iron-sulphur cluster biosynthesis ND440_12230 PF01592 NifU-like N terminal domain ND440_12235 PF00266 Aminotransferase class-V ND440_12240 PF02082 Transcriptional regulator ND440_12245 PF00588 SpoU rRNA Methylase family ND440_12250 PF00459 Inositol monophosphatase family ND440_12255 PF03824 High-affinity nickel-transport protein ND440_12260 PF06226 Protein of unknown function (DUF1007) ND440_12265 PF00874 PRD domain ND440_12270 PF12832 MFS_1 like family ND440_12275 PF00464 Serine hydroxymethyltransferase ND440_12280 PF00970 Oxidoreductase FAD-binding domain ND440_12280 PF00042 Globin ND440_12280 PF00175 Oxidoreductase NAD-binding domain ND440_12285 PF14502 Helix-turn-helix domain ND440_12285 PF14503 YhfZ C-terminal domain ND440_12295 PF01168 Alanine racemase, N-terminal domain ND440_12300 PF02126 Phosphotriesterase family ND440_12305 PF10941 Protein of unknown function DUF2620 ND440_12310 PF10797 Protein of unknown function ND440_12315 PF00543 Nitrogen regulatory protein P-II ND440_12320 PF00795 Carbon-nitrogen hydrolase ND440_12320 PF02540 NAD synthase ND440_12325 PF00072 Response regulator receiver domain ND440_12325 PF00158 Sigma-54 interaction domain ND440_12330 PF13942 YfhG lipoprotein ND440_12335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_12335 PF00512 His Kinase A (phospho-acceptor) domain ND440_12345 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ND440_12345 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ND440_12345 PF02769 AIR synthase related protein, C-terminal domain ND440_12350 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND440_12350 PF01464 Transglycosylase SLT domain ND440_12355 PF14437 MafB19-like deaminase ND440_12365 PF00367 phosphotransferase system, EIIB ND440_12365 PF02378 Phosphotransferase system, EIIC ND440_12370 PF01380 SIS domain ND440_12375 PF01380 SIS domain ND440_12375 PF01418 Helix-turn-helix domain, rpiR family ND440_12380 PF12838 4Fe-4S dicluster domain ND440_12385 PF01648 4'-phosphopantetheinyl transferase superfamily ND440_12390 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ND440_12395 PF11967 Recombination protein O N terminal ND440_12395 PF02565 Recombination protein O C terminal ND440_12400 PF07650 KH domain ND440_12400 PF01926 50S ribosome-binding GTPase ND440_12405 PF00035 Double-stranded RNA binding motif ND440_12405 PF14622 Ribonuclease-III-like ND440_12410 PF10502 Signal peptidase, peptidase S26 ND440_12415 PF06421 GTP-binding protein LepA C-terminus ND440_12415 PF00679 Elongation factor G C-terminus ND440_12415 PF03144 Elongation factor Tu domain 2 ND440_12415 PF00009 Elongation factor Tu GTP binding domain ND440_12425 PF17188 MucB/RseB C-terminal domain ND440_12425 PF03888 MucB/RseB N-terminal domain ND440_12430 PF03872 Anti sigma-E protein RseA, N-terminal domain ND440_12430 PF03873 Anti sigma-E protein RseA, C-terminal domain ND440_12435 PF04542 Sigma-70 region 2 ND440_12435 PF08281 Sigma-70, region 4 ND440_12440 PF00890 FAD binding domain ND440_12440 PF02910 Fumarate reductase flavoprotein C-term ND440_12445 PF05175 Methyltransferase small domain ND440_12450 PF00271 Helicase conserved C-terminal domain ND440_12450 PF00270 DEAD/DEAH box helicase ND440_12455 PF12796 Ankyrin repeats (3 copies) ND440_12465 PF01228 Glycine radical ND440_12470 PF03167 Uracil DNA glycosylase superfamily ND440_12475 PF01025 GrpE ND440_12480 PF01513 ATP-NAD kinase ND440_12485 PF02463 RecF/RecN/SMC N terminal domain ND440_12490 PF04355 SmpA / OmlA family ND440_12495 PF03658 RnfH family Ubiquitin ND440_12500 PF03364 Polyketide cyclase / dehydrase and lipid transport ND440_12505 PF01668 SmpB protein ND440_12515 PF13356 Arm DNA-binding domain ND440_12515 PF00589 Phage integrase family ND440_12525 PF04917 Bacterial shufflon protein, N-terminal constant region ND440_12540 PF01443 Viral (Superfamily 1) RNA helicase ND440_12540 PF17841 BID domain of Bartonella effector protein (Bep) ND440_12540 PF03389 MobA/MobL family ND440_12550 PF00005 ABC transporter ND440_12600 PF00571 CBS domain ND440_12600 PF01380 SIS domain ND440_12605 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND440_12605 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND440_12615 PF02653 Branched-chain amino acid transport system / permease component ND440_12620 PF00005 ABC transporter ND440_12630 PF00561 alpha/beta hydrolase fold ND440_12635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_12635 PF03466 LysR substrate binding domain ND440_12640 PF02652 L-lactate permease ND440_12645 PF01070 FMN-dependent dehydrogenase ND440_12650 PF06039 Malate:quinone oxidoreductase (Mqo) ND440_12655 PF00313 'Cold-shock' DNA-binding domain ND440_12665 PF06711 Protein of unknown function (DUF1198) ND440_12670 PF09400 Protein of unknown function (DUF2002) ND440_12685 PF07972 NrdI Flavodoxin like ND440_12690 PF02867 Ribonucleotide reductase, barrel domain ND440_12690 PF00317 Ribonucleotide reductase, all-alpha domain ND440_12690 PF08343 Ribonucleotide reductase N-terminal ND440_12695 PF00268 Ribonucleotide reductase, small chain ND440_12700 PF00571 CBS domain ND440_12700 PF00005 ABC transporter ND440_12705 PF00528 Binding-protein-dependent transport system inner membrane component ND440_12710 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND440_12715 PF07690 Major Facilitator Superfamily ND440_12720 PF01047 MarR family ND440_12730 PF00529 HlyD membrane-fusion protein of T1SS ND440_12730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND440_12735 PF07690 Major Facilitator Superfamily ND440_12740 PF00588 SpoU rRNA Methylase family ND440_12740 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND440_12745 PF00085 Thioredoxin ND440_12750 PF03942 DTW domain ND440_12755 PF13607 Succinyl-CoA ligase like flavodoxin domain ND440_12755 PF13380 CoA binding domain ND440_12755 PF00583 Acetyltransferase (GNAT) family ND440_12760 PF13091 PLD-like domain ND440_12765 PF10043 Predicted periplasmic lipoprotein (DUF2279) ND440_12795 PF07724 AAA domain (Cdc48 subfamily) ND440_12795 PF17871 AAA lid domain ND440_12795 PF02861 Clp amino terminal domain, pathogenicity island component ND440_12795 PF10431 C-terminal, D2-small domain, of ClpB protein ND440_12795 PF00004 ATPase family associated with various cellular activities (AAA) ND440_12800 PF02578 Multi-copper polyphenol oxidoreductase laccase ND440_12805 PF00849 RNA pseudouridylate synthase ND440_12805 PF01479 S4 domain ND440_12810 PF13525 Outer membrane lipoprotein ND440_12815 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND440_12825 PF01817 Chorismate mutase type II ND440_12825 PF00800 Prephenate dehydratase ND440_12830 PF01817 Chorismate mutase type II ND440_12830 PF02153 Prephenate dehydrogenase ND440_12835 PF00793 DAHP synthetase I family ND440_12840 PF04397 LytTr DNA-binding domain ND440_12840 PF00072 Response regulator receiver domain ND440_12845 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND440_12850 PF04338 Protein of unknown function, DUF481 ND440_12855 PF01245 Ribosomal protein L19 ND440_12860 PF01746 tRNA (Guanine-1)-methyltransferase ND440_12865 PF05239 PRC-barrel domain ND440_12865 PF01782 RimM N-terminal domain ND440_12870 PF00886 Ribosomal protein S16 ND440_12875 PF00448 SRP54-type protein, GTPase domain ND440_12875 PF02881 SRP54-type protein, helical bundle domain ND440_12875 PF02978 Signal peptide binding domain ND440_12880 PF01578 Cytochrome C assembly protein ND440_12885 PF00571 CBS domain ND440_12885 PF03471 Transporter associated domain ND440_12885 PF01595 Cyclin M transmembrane N-terminal domain ND440_12890 PF02664 S-Ribosylhomocysteinase (LuxS) ND440_12895 PF04262 Glutamate-cysteine ligase ND440_12900 PF09335 SNARE associated Golgi protein ND440_12905 PF13419 Haloacid dehalogenase-like hydrolase ND440_12935 PF02599 Global regulator protein family ND440_12940 PF01411 tRNA synthetases class II (A) ND440_12940 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND440_12940 PF02272 DHHA1 domain ND440_12945 PF02631 RecX family ND440_12950 PF00154 recA bacterial DNA recombination protein ND440_12955 PF02464 Competence-damaged protein ND440_12960 PF07690 Major Facilitator Superfamily ND440_12965 PF05681 Fumarate hydratase (Fumerase) ND440_12965 PF05683 Fumarase C-terminus ND440_12990 PF11356 Type II secretion system protein C ND440_12995 PF03958 Bacterial type II/III secretion system short domain ND440_12995 PF00263 Bacterial type II and III secretion system protein ND440_13000 PF00437 Type II/IV secretion system protein ND440_13005 PF00482 Type II secretion system (T2SS), protein F ND440_13010 PF07963 Prokaryotic N-terminal methylation motif ND440_13010 PF08334 Type II secretion system (T2SS), protein G ND440_13020 PF07963 Prokaryotic N-terminal methylation motif ND440_13020 PF02501 Type II secretion system (T2SS), protein I ND440_13025 PF07963 Prokaryotic N-terminal methylation motif ND440_13025 PF11612 Type II secretion system (T2SS), protein J ND440_13030 PF03934 Type II secretion system (T2SS), protein K ND440_13035 PF12693 GspL periplasmic domain ND440_13035 PF05134 Type II secretion system (T2SS), protein L ND440_13045 PF06750 Bacterial Peptidase A24 N-terminal domain ND440_13045 PF01478 Type IV leader peptidase family ND440_13050 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND440_13055 PF18416 N-acetylglucosamine binding protein domain 2 ND440_13055 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND440_13075 PF00550 Phosphopantetheine attachment site ND440_13100 PF07720 Tetratricopeptide repeat ND440_13105 PF01312 FlhB HrpN YscU SpaS Family ND440_13110 PF01311 Bacterial export proteins, family 1 ND440_13115 PF01313 Bacterial export proteins, family 3 ND440_13120 PF00813 FliP family ND440_13125 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND440_13140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND440_13140 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND440_13140 PF18269 T3SS EscN ATPase C-terminal domain ND440_13150 PF00771 FHIPEP family ND440_13155 PF07201 HrpJ-like domain ND440_13160 PF00263 Bacterial type II and III secretion system protein ND440_13160 PF03958 Bacterial type II/III secretion system short domain ND440_13165 PF12833 Helix-turn-helix domain ND440_13185 PF01514 Secretory protein of YscJ/FliF family ND440_13205 PF01464 Transglycosylase SLT domain ND440_13220 PF00072 Response regulator receiver domain ND440_13220 PF00196 Bacterial regulatory proteins, luxR family ND440_13225 PF09308 LuxQ, periplasmic ND440_13225 PF00072 Response regulator receiver domain ND440_13225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_13225 PF00512 His Kinase A (phospho-acceptor) domain ND440_13265 PF00501 AMP-binding enzyme ND440_13265 PF13193 AMP-binding enzyme C-terminal domain ND440_13265 PF00668 Condensation domain ND440_13265 PF00550 Phosphopantetheine attachment site ND440_13300 PF05188 MutS domain II ND440_13300 PF05192 MutS domain III ND440_13300 PF05190 MutS family domain IV ND440_13300 PF00488 MutS domain V ND440_13300 PF01624 MutS domain I ND440_13305 PF04542 Sigma-70 region 2 ND440_13305 PF04539 Sigma-70 region 3 ND440_13305 PF04545 Sigma-70, region 4 ND440_13305 PF00140 Sigma-70 factor, region 1.2 ND440_13310 PF01476 LysM domain ND440_13310 PF01551 Peptidase family M23 ND440_13320 PF01975 Survival protein SurE ND440_13325 PF01142 tRNA pseudouridine synthase D (TruD) ND440_13330 PF02542 YgbB family ND440_13335 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ND440_13340 PF04977 Septum formation initiator ND440_13345 PF12084 Protein of unknown function (DUF3561) ND440_13355 PF00009 Elongation factor Tu GTP binding domain ND440_13360 PF01507 Phosphoadenosine phosphosulfate reductase family ND440_13365 PF10414 Sirohaem synthase dimerisation region ND440_13365 PF14824 Sirohaem biosynthesis protein central ND440_13365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND440_13370 PF04389 Peptidase family M28 ND440_13385 PF01507 Phosphoadenosine phosphosulfate reductase family ND440_13390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND440_13390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND440_13395 PF00667 FAD binding domain ND440_13395 PF00258 Flavodoxin ND440_13395 PF00175 Oxidoreductase NAD-binding domain ND440_13400 PF01242 6-pyruvoyl tetrahydropterin synthase ND440_13410 PF02796 Helix-turn-helix domain of resolvase ND440_13410 PF00239 Resolvase, N terminal domain ND440_13415 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND440_13420 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND440_13480 PF04984 Phage tail sheath protein subtilisin-like domain ND440_13480 PF17482 Phage tail sheath C-terminal domain ND440_13505 PF10124 Mu-like prophage major head subunit gpT ND440_13530 PF06074 Protein of unknown function (DUF935) ND440_13585 PF06252 Protein of unknown function (DUF1018) ND440_13650 PF13693 Winged helix-turn-helix DNA-binding ND440_13665 PF00113 Enolase, C-terminal TIM barrel domain ND440_13665 PF03952 Enolase, N-terminal domain ND440_13670 PF00117 Glutamine amidotransferase class-I ND440_13670 PF06418 CTP synthase N-terminus ND440_13675 PF03819 MazG nucleotide pyrophosphohydrolase domain ND440_13680 PF04607 Region found in RelA / SpoT proteins ND440_13680 PF13291 ACT domain ND440_13680 PF02824 TGS domain ND440_13685 PF05958 tRNA (Uracil-5-)-methyltransferase ND440_13685 PF01938 TRAM domain ND440_13690 PF00072 Response regulator receiver domain ND440_13690 PF00672 HAMP domain ND440_13690 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND440_13690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_13690 PF01627 Hpt domain ND440_13690 PF00512 His Kinase A (phospho-acceptor) domain ND440_13695 PF00595 PDZ domain ND440_13700 PF13286 Phosphohydrolase-associated domain ND440_13700 PF01966 HD domain ND440_13705 PF01048 Phosphorylase superfamily ND440_13710 PF01497 Periplasmic binding protein ND440_13715 PF03458 UPF0126 domain ND440_13720 PF01521 Iron-sulphur cluster biosynthesis ND440_13725 PF00654 Voltage gated chloride channel ND440_13730 PF00202 Aminotransferase class-III ND440_13735 PF00912 Transglycosylase ND440_13735 PF00905 Penicillin binding protein transpeptidase domain ND440_13735 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ND440_13735 PF14814 Bifunctional transglycosylase second domain ND440_13740 PF00270 DEAD/DEAH box helicase ND440_13740 PF04408 Helicase associated domain (HA2) ND440_13740 PF00271 Helicase conserved C-terminal domain ND440_13740 PF08482 ATP-dependent helicase C-terminal ND440_13745 PF02834 LigT like Phosphoesterase ND440_13750 PF17746 SfsA N-terminal OB domain ND440_13750 PF03749 Sugar fermentation stimulation protein RE domain ND440_13755 PF01258 Prokaryotic dksA/traR C4-type zinc finger ND440_13760 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND440_13765 PF12626 Polymerase A arginine-rich C-terminus ND440_13765 PF12627 Probable RNA and SrmB- binding site of polymerase A ND440_13765 PF01743 Poly A polymerase head domain ND440_13770 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ND440_13775 PF02548 Ketopantoate hydroxymethyltransferase ND440_13780 PF02569 Pantoate-beta-alanine ligase ND440_13785 PF02261 Aspartate decarboxylase ND440_13790 PF01522 Polysaccharide deacetylase ND440_13795 PF01061 ABC-2 type transporter ND440_13800 PF00005 ABC transporter ND440_13805 PF00484 Carbonic anhydrase ND440_13810 PF00156 Phosphoribosyl transferase domain ND440_13815 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND440_13815 PF07732 Multicopper oxidase ND440_13815 PF07731 Multicopper oxidase ND440_13815 PF00394 Multicopper oxidase ND440_13820 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND440_13825 PF17284 Spermidine synthase tetramerisation domain ND440_13830 PF02675 S-adenosylmethionine decarboxylase ND440_13835 PF00892 EamA-like transporter family ND440_13840 PF06062 Uncharacterised protein family (UPF0231) ND440_13845 PF06434 Aconitate hydratase 2 N-terminus ND440_13845 PF00330 Aconitase family (aconitate hydratase) ND440_13845 PF11791 Aconitate B N-terminal domain ND440_13855 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND440_13855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND440_13860 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND440_13860 PF00364 Biotin-requiring enzyme ND440_13860 PF02817 e3 binding domain ND440_13865 PF17831 Pyruvate dehydrogenase E1 component middle domain ND440_13865 PF00456 Transketolase, thiamine diphosphate binding domain ND440_13870 PF07729 FCD domain ND440_13870 PF00392 Bacterial regulatory proteins, gntR family ND440_13875 PF00324 Amino acid permease ND440_13880 PF17113 Regulatory signalling modulator protein AmpE ND440_13885 PF01510 N-acetylmuramoyl-L-alanine amidase ND440_13890 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ND440_13890 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ND440_13895 PF07963 Prokaryotic N-terminal methylation motif ND440_13900 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ND440_13900 PF00437 Type II/IV secretion system protein ND440_13905 PF00482 Type II secretion system (T2SS), protein F ND440_13910 PF00478 IMP dehydrogenase / GMP reductase domain ND440_13915 PF01121 Dephospho-CoA kinase ND440_13920 PF07072 Cell division protein ND440_13925 PF03884 DNA gyrase inhibitor YacG ND440_13930 PF00293 NUDIX domain ND440_13935 PF02810 SEC-C motif ND440_13935 PF07517 SecA DEAD-like domain ND440_13935 PF01043 SecA preprotein cross-linking domain ND440_13935 PF07516 SecA Wing and Scaffold domain ND440_13940 PF06558 Secretion monitor precursor protein (SecM) ND440_13950 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ND440_13955 PF00091 Tubulin/FtsZ family, GTPase domain ND440_13955 PF12327 FtsZ family, C-terminal domain ND440_13960 PF02491 SHS2 domain inserted in FTSA ND440_13965 PF03799 Cell division protein FtsQ ND440_13965 PF08478 POTRA domain, FtsQ-type ND440_13970 PF07478 D-ala D-ala ligase C-terminus ND440_13970 PF01820 D-ala D-ala ligase N-terminus ND440_13975 PF01225 Mur ligase family, catalytic domain ND440_13975 PF02875 Mur ligase family, glutamate ligase domain ND440_13975 PF08245 Mur ligase middle domain ND440_13980 PF04101 Glycosyltransferase family 28 C-terminal domain ND440_13980 PF03033 Glycosyltransferase family 28 N-terminal domain ND440_13985 PF01098 Cell cycle protein ND440_13990 PF02875 Mur ligase family, glutamate ligase domain ND440_13990 PF08245 Mur ligase middle domain ND440_13995 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ND440_13995 PF00953 Glycosyl transferase family 4 ND440_14000 PF08245 Mur ligase middle domain ND440_14000 PF02875 Mur ligase family, glutamate ligase domain ND440_14000 PF01225 Mur ligase family, catalytic domain ND440_14005 PF08245 Mur ligase middle domain ND440_14005 PF01225 Mur ligase family, catalytic domain ND440_14005 PF02875 Mur ligase family, glutamate ligase domain ND440_14010 PF03717 Penicillin-binding Protein dimerisation domain ND440_14010 PF00905 Penicillin binding protein transpeptidase domain ND440_14015 PF04999 Cell division protein FtsL ND440_14020 PF01795 MraW methylase family ND440_14025 PF02381 MraZ protein, putative antitoxin-like ND440_14030 PF06610 L-alanine exporter ND440_14035 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND440_14035 PF00356 Bacterial regulatory proteins, lacI family ND440_14040 PF12323 Helix-turn-helix domain ND440_14040 PF01385 Probable transposase ND440_14040 PF07282 Putative transposase DNA-binding domain ND440_14045 PF01797 Transposase IS200 like ND440_14050 PF10369 Small subunit of acetolactate synthase ND440_14055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND440_14055 PF00205 Thiamine pyrophosphate enzyme, central domain ND440_14055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND440_14060 PF00501 AMP-binding enzyme ND440_14065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_14065 PF03466 LysR substrate binding domain ND440_14070 PF00682 HMGL-like ND440_14070 PF08502 LeuA allosteric (dimerisation) domain ND440_14075 PF00180 Isocitrate/isopropylmalate dehydrogenase ND440_14080 PF00330 Aconitase family (aconitate hydratase) ND440_14085 PF00694 Aconitase C-terminal domain ND440_14090 PF07690 Major Facilitator Superfamily ND440_14100 PF12793 Sugar transport-related sRNA regulator N-term ND440_14100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND440_14110 PF00528 Binding-protein-dependent transport system inner membrane component ND440_14115 PF00005 ABC transporter ND440_14120 PF09335 SNARE associated Golgi protein ND440_14125 PF03104 DNA polymerase family B, exonuclease domain ND440_14125 PF00136 DNA polymerase family B ND440_14130 PF00271 Helicase conserved C-terminal domain ND440_14130 PF12137 RNA polymerase recycling family C-terminal ND440_14130 PF00176 SNF2 family N-terminal domain ND440_14130 PF18339 RapA N-terminal Tudor like domain 1 ND440_14130 PF18337 RapA N-terminal Tudor like domain ND440_14135 PF00849 RNA pseudouridylate synthase ND440_14140 PF00226 DnaJ domain ND440_14140 PF05099 Tellurite resistance protein TerB ND440_14145 PF03968 OstA-like protein ND440_14145 PF04453 LPS transport system D ND440_14150 PF09312 SurA N-terminal domain ND440_14150 PF00639 PPIC-type PPIASE domain ND440_14155 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ND440_14160 PF00398 Ribosomal RNA adenine dimethylase ND440_14165 PF04379 ApaG domain ND440_14170 PF00149 Calcineurin-like phosphoesterase ND440_14180 PF00186 Dihydrofolate reductase ND440_14185 PF12821 Threonine/Serine exporter, ThrE ND440_14190 PF06738 Putative threonine/serine exporter ND440_14195 PF01810 LysE type translocator ND440_14200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND440_14200 PF02142 MGS-like domain ND440_14200 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ND440_14205 PF00117 Glutamine amidotransferase class-I ND440_14205 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ND440_14210 PF01113 Dihydrodipicolinate reductase, N-terminus ND440_14210 PF05173 Dihydrodipicolinate reductase, C-terminus ND440_14215 PF02401 LytB protein ND440_14220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND440_14225 PF01252 Signal peptidase (SPase) II ND440_14230 PF06827 Zinc finger found in FPG and IleRS ND440_14230 PF00133 tRNA synthetases class I (I, L, M and V) ND440_14230 PF08264 Anticodon-binding domain of tRNA ND440_14235 PF01687 Riboflavin kinase ND440_14235 PF06574 FAD synthetase ND440_14240 PF01649 Ribosomal protein S20 ND440_14245 PF03466 LysR substrate binding domain ND440_14245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_14250 PF06965 Na+/H+ antiporter 1 ND440_14255 PF00226 DnaJ domain ND440_14255 PF00684 DnaJ central domain ND440_14255 PF01556 DnaJ C terminal domain ND440_14260 PF00012 Hsp70 protein ND440_14265 PF01184 GPR1/FUN34/yaaH family ND440_14275 PF07690 Major Facilitator Superfamily ND440_14280 PF00994 Probable molybdopterin binding domain ND440_14285 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND440_14290 PF03883 Peroxide stress protein YaaA ND440_14295 PF00291 Pyridoxal-phosphate dependent enzyme ND440_14295 PF14821 Threonine synthase N terminus ND440_14300 PF00288 GHMP kinases N terminal domain ND440_14300 PF08544 GHMP kinases C terminal ND440_14305 PF01842 ACT domain ND440_14305 PF13840 ACT domain ND440_14305 PF00742 Homoserine dehydrogenase ND440_14305 PF03447 Homoserine dehydrogenase, NAD binding domain ND440_14305 PF00696 Amino acid kinase family ND440_14310 PF08254 Threonine leader peptide ND440_14320 PF00072 Response regulator receiver domain ND440_14320 PF00486 Transcriptional regulatory protein, C terminal ND440_14325 PF05981 CreA protein ND440_14330 PF06445 GyrI-like small molecule binding domain ND440_14330 PF12833 Helix-turn-helix domain ND440_14335 PF00300 Histidine phosphatase superfamily (branch 1) ND440_14340 PF01931 Protein of unknown function DUF84 ND440_14345 PF01371 Trp repressor protein ND440_14350 PF01464 Transglycosylase SLT domain ND440_14350 PF14718 Soluble lytic murein transglycosylase L domain ND440_14355 PF00689 Cation transporting ATPase, C-terminus ND440_14355 PF00690 Cation transporter/ATPase, N-terminus ND440_14370 PF00005 ABC transporter ND440_14370 PF12848 ABC transporter ND440_14375 PF13521 AAA domain ND440_14375 PF01381 Helix-turn-helix ND440_14380 PF18073 Rubredoxin metal binding domain ND440_14385 PF18429 Domain of unknown function (DUF5609) ND440_14390 PF10144 Bacterial virulence factor haemolysin ND440_14395 PF01048 Phosphorylase superfamily ND440_14400 PF01676 Metalloenzyme superfamily ND440_14405 PF02885 Glycosyl transferase family, helical bundle domain ND440_14405 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ND440_14405 PF00591 Glycosyl transferase family, a/b domain ND440_14410 PF01791 DeoC/LacD family aldolase ND440_14415 PF07670 Nucleoside recognition ND440_14415 PF01773 Na+ dependent nucleoside transporter N-terminus ND440_14415 PF07662 Na+ dependent nucleoside transporter C-terminus ND440_14420 PF01026 TatD related DNase ND440_14425 PF01734 Patatin-like phospholipase ND440_14430 PF07043 Protein of unknown function (DUF1328) ND440_14435 PF04972 BON domain ND440_14440 PF00009 Elongation factor Tu GTP binding domain ND440_14440 PF03144 Elongation factor Tu domain 2 ND440_14440 PF16658 Class II release factor RF3, C-terminal domain ND440_14445 PF00583 Acetyltransferase (GNAT) family ND440_14450 PF03603 DNA polymerase III psi subunit ND440_14455 PF05175 Methyltransferase small domain ND440_14455 PF08468 Methyltransferase small domain N-terminal ND440_14475 PF07256 Protein of unknown function (DUF1435) ND440_14480 PF00990 Diguanylate cyclase, GGDEF domain ND440_14485 PF02954 Bacterial regulatory protein, Fis family ND440_14485 PF00989 PAS fold ND440_14485 PF00158 Sigma-54 interaction domain ND440_14490 PF03610 PTS system fructose IIA component ND440_14490 PF05524 PEP-utilising enzyme, N-terminal ND440_14490 PF00381 PTS HPr component phosphorylation site ND440_14490 PF00391 PEP-utilising enzyme, mobile domain ND440_14495 PF02734 DAK2 domain ND440_14500 PF02733 Dak1 domain ND440_14505 PF00465 Iron-containing alcohol dehydrogenase ND440_14510 PF00873 AcrB/AcrD/AcrF family ND440_14515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND440_14530 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND440_14535 PF10696 Protein of unknown function (DUF2501) ND440_14545 PF01116 Fructose-bisphosphate aldolase class-II ND440_14555 PF00884 Sulfatase ND440_14560 PF13186 Iron-sulfur cluster-binding domain ND440_14560 PF04055 Radical SAM superfamily ND440_14565 PF07470 Glycosyl Hydrolase Family 88 ND440_14575 PF04962 KduI/IolB family ND440_14580 PF01979 Amidohydrolase family ND440_14590 PF03613 PTS system mannose/fructose/sorbose family IID component ND440_14595 PF03609 PTS system sorbose-specific iic component ND440_14600 PF03830 PTS system sorbose subfamily IIB component ND440_14605 PF01380 SIS domain ND440_14610 PF08013 Tagatose 6 phosphate kinase ND440_14615 PF00455 DeoR C terminal sensor domain ND440_14615 PF08220 DeoR-like helix-turn-helix domain ND440_14620 PF00884 Sulfatase ND440_14625 PF09092 Lyase, N terminal ND440_14625 PF09093 Lyase, catalytic ND440_14625 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND440_14625 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND440_14640 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND440_14640 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain ND440_14640 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND440_14645 PF06178 Oligogalacturonate-specific porin protein (KdgM) ND440_14650 PF01344 Kelch motif ND440_14725 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ND440_14730 PF04221 RelB antitoxin ND440_14745 PF18766 SWI2/SNF2 ATPase ND440_14745 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ND440_14745 PF11867 Domain of unknown function (DUF3387) ND440_14750 PF01420 Type I restriction modification DNA specificity domain ND440_14755 PF02384 N-6 DNA Methylase ND440_14795 PF03739 Lipopolysaccharide export system permease LptF/LptG ND440_14800 PF03739 Lipopolysaccharide export system permease LptF/LptG ND440_14805 PF00883 Cytosol aminopeptidase family, catalytic domain ND440_14805 PF02789 Cytosol aminopeptidase family, N-terminal domain ND440_14810 PF04364 DNA polymerase III chi subunit, HolC ND440_14815 PF08264 Anticodon-binding domain of tRNA ND440_14815 PF00133 tRNA synthetases class I (I, L, M and V) ND440_14815 PF10458 Valyl tRNA synthetase tRNA binding arm ND440_14820 PF00583 Acetyltransferase (GNAT) family ND440_14825 PF06877 Regulator of ribonuclease activity B ND440_14830 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND440_14830 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND440_14835 PF13597 Anaerobic ribonucleoside-triphosphate reductase ND440_14835 PF03477 ATP cone domain ND440_14845 PF06754 Phosphonate metabolism protein PhnG ND440_14850 PF05845 Bacterial phosphonate metabolism protein (PhnH) ND440_14855 PF05861 Bacterial phosphonate metabolism protein (PhnI) ND440_14860 PF06007 Phosphonate metabolism protein PhnJ ND440_14865 PF00005 ABC transporter ND440_14870 PF00005 ABC transporter ND440_14875 PF07969 Amidohydrolase family ND440_14885 PF12706 Beta-lactamase superfamily domain ND440_14890 PF13460 NAD(P)H-binding ND440_14900 PF10940 Protein of unknown function (DUF2618) ND440_14905 PF01276 Orn/Lys/Arg decarboxylase, major domain ND440_14905 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND440_14905 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND440_14910 PF13520 Amino acid permease ND440_14915 PF01541 GIY-YIG catalytic domain ND440_14920 PF13508 Acetyltransferase (GNAT) domain ND440_14925 PF02036 SCP-2 sterol transfer family ND440_14930 PF01136 Peptidase family U32 ND440_14935 PF01136 Peptidase family U32 ND440_14940 PF03313 Serine dehydratase alpha chain ND440_14950 PF00296 Luciferase-like monooxygenase ND440_14955 PF00271 Helicase conserved C-terminal domain ND440_14955 PF12343 Cold shock protein DEAD box A ND440_14955 PF00270 DEAD/DEAH box helicase ND440_14955 PF03880 DbpA RNA binding domain ND440_14960 PF13181 Tetratricopeptide repeat ND440_14960 PF07719 Tetratricopeptide repeat ND440_14965 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ND440_14965 PF01138 3' exoribonuclease family, domain 1 ND440_14965 PF00575 S1 RNA binding domain ND440_14965 PF00013 KH domain ND440_14965 PF03725 3' exoribonuclease family, domain 2 ND440_14970 PF00312 Ribosomal protein S15 ND440_14975 PF01509 TruB family pseudouridylate synthase (N terminal domain) ND440_14975 PF16198 tRNA pseudouridylate synthase B C-terminal domain ND440_14975 PF09157 Pseudouridine synthase II TruB, C-terminal ND440_14980 PF02033 Ribosome-binding factor A ND440_14985 PF04760 Translation initiation factor IF-2, N-terminal region ND440_14985 PF08364 Bacterial translation initiation factor IF-2 associated region ND440_14985 PF11987 Translation-initiation factor 2 ND440_14985 PF03144 Elongation factor Tu domain 2 ND440_14985 PF00009 Elongation factor Tu GTP binding domain ND440_14990 PF00575 S1 RNA binding domain ND440_14990 PF08529 NusA N-terminal domain ND440_14990 PF13184 NusA-like KH domain ND440_14995 PF17384 RimP C-terminal SH3 domain ND440_14995 PF02576 RimP N-terminal domain ND440_15010 PF03840 Preprotein translocase SecG subunit ND440_15015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND440_15015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND440_15015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND440_15015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND440_15020 PF00809 Pterin binding enzyme ND440_15025 PF17862 AAA+ lid domain ND440_15025 PF06480 FtsH Extracellular ND440_15025 PF01434 Peptidase family M41 ND440_15025 PF00004 ATPase family associated with various cellular activities (AAA) ND440_15030 PF01728 FtsJ-like methyltransferase ND440_15035 PF01985 CRS1 / YhbY (CRM) domain ND440_15040 PF03449 Transcription elongation factor, N-terminal ND440_15040 PF01272 Transcription elongation factor, GreA/GreB, C-term ND440_15045 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ND440_15050 PF00072 Response regulator receiver domain ND440_15050 PF00486 Transcriptional regulatory protein, C terminal ND440_15055 PF00672 HAMP domain ND440_15055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_15055 PF00512 His Kinase A (phospho-acceptor) domain ND440_15060 PF01926 50S ribosome-binding GTPase ND440_15060 PF01018 GTP1/OBG ND440_15065 PF00892 EamA-like transporter family ND440_15070 PF01016 Ribosomal L27 protein ND440_15075 PF00829 Ribosomal prokaryotic L21 protein ND440_15080 PF00348 Polyprenyl synthetase ND440_15095 PF13693 Winged helix-turn-helix DNA-binding ND440_15100 PF00056 lactate/malate dehydrogenase, NAD binding domain ND440_15100 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ND440_15105 PF02863 Arginine repressor, C-terminal domain ND440_15105 PF01316 Arginine repressor, DNA binding domain ND440_15110 PF08245 Mur ligase middle domain ND440_15110 PF02875 Mur ligase family, glutamate ligase domain ND440_15110 PF01225 Mur ligase family, catalytic domain ND440_15115 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ND440_15120 PF00719 Inorganic pyrophosphatase ND440_15125 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ND440_15130 PF04357 TamB, inner membrane protein subunit of TAM complex ND440_15135 PF17243 POTRA domain TamA domain 1 ND440_15135 PF07244 Surface antigen variable number repeat ND440_15135 PF01103 Surface antigen ND440_15140 PF01625 Peptide methionine sulfoxide reductase ND440_15145 PF00571 CBS domain ND440_15145 PF03471 Transporter associated domain ND440_15145 PF01595 Cyclin M transmembrane N-terminal domain ND440_15150 PF06526 Protein of unknown function (DUF1107) ND440_15155 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ND440_15160 PF00459 Inositol monophosphatase family ND440_15165 PF02872 5'-nucleotidase, C-terminal domain ND440_15165 PF00149 Calcineurin-like phosphoesterase ND440_15170 PF01814 Hemerythrin HHE cation binding domain ND440_15170 PF04405 Domain of Unknown function (DUF542) ND440_15175 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND440_15175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND440_15180 PF08525 Opacity-associated protein A N-terminal motif ND440_15180 PF04225 Opacity-associated protein A LysM-like domain ND440_15185 PF01281 Ribosomal protein L9, N-terminal domain ND440_15185 PF03948 Ribosomal protein L9, C-terminal domain ND440_15190 PF01084 Ribosomal protein S18 ND440_15195 PF00436 Single-strand binding protein family ND440_15200 PF01250 Ribosomal protein S6 ND440_15210 PF00326 Prolyl oligopeptidase family ND440_15230 PF00577 Outer membrane usher protein ND440_15230 PF13953 PapC C-terminal domain ND440_15230 PF13954 PapC N-terminal domain ND440_15235 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND440_15255 PF00588 SpoU rRNA Methylase family ND440_15255 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND440_15260 PF00575 S1 RNA binding domain ND440_15260 PF00773 RNB domain ND440_15260 PF08206 Ribonuclease B OB domain ND440_15260 PF08461 Ribonuclease R winged-helix domain ND440_15260 PF17876 Cold shock domain ND440_15265 PF02082 Transcriptional regulator ND440_15270 PF00709 Adenylosuccinate synthetase ND440_15275 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ND440_15280 PF01145 SPFH domain / Band 7 family ND440_15285 PF01145 SPFH domain / Band 7 family ND440_15285 PF12221 Bacterial membrane protein N terminal ND440_15290 PF01926 50S ribosome-binding GTPase ND440_15290 PF16360 GTP-binding GTPase Middle Region ND440_15290 PF13167 GTP-binding GTPase N-terminal ND440_15295 PF17209 Hfq protein ND440_15305 PF01119 DNA mismatch repair protein, C-terminal domain ND440_15305 PF08676 MutL C terminal dimerisation domain ND440_15310 PF01520 N-acetylmuramoyl-L-alanine amidase ND440_15315 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ND440_15320 PF03853 YjeF-related protein N-terminus ND440_15320 PF01256 Carbohydrate kinase ND440_15325 PF08331 Domain of unknown function (DUF1730) ND440_15345 PF00929 Exonuclease ND440_15350 PF03193 RsgA GTPase ND440_15355 PF02666 Phosphatidylserine decarboxylase ND440_15360 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND440_15360 PF12795 Mechanosensitive ion channel porin domain ND440_15360 PF00924 Mechanosensitive ion channel ND440_15365 PF00152 tRNA synthetases class II (D, K and N) ND440_15370 PF00890 FAD binding domain ND440_15370 PF02910 Fumarate reductase flavoprotein C-term ND440_15375 PF13183 4Fe-4S dicluster domain ND440_15375 PF13085 2Fe-2S iron-sulfur cluster binding domain ND440_15380 PF02300 Fumarate reductase subunit C ND440_15385 PF02313 Fumarate reductase subunit D ND440_15390 PF08212 Lipocalin-like domain ND440_15395 PF00893 Small Multidrug Resistance protein ND440_15400 PF00419 Fimbrial protein ND440_15405 PF00577 Outer membrane usher protein ND440_15405 PF13954 PapC N-terminal domain ND440_15405 PF13953 PapC C-terminal domain ND440_15410 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND440_15410 PF02753 Pili assembly chaperone PapD, C-terminal domain ND440_15420 PF00196 Bacterial regulatory proteins, luxR family ND440_15425 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND440_15425 PF18416 N-acetylglucosamine binding protein domain 2 ND440_15430 PF09285 Elongation factor P, C-terminal ND440_15430 PF08207 Elongation factor P (EF-P) KOW-like domain ND440_15430 PF01132 Elongation factor P (EF-P) OB domain ND440_15435 PF04055 Radical SAM superfamily ND440_15440 PF13698 Domain of unknown function (DUF4156) ND440_15445 PF00118 TCP-1/cpn60 chaperonin family ND440_15450 PF00166 Chaperonin 10 Kd subunit ND440_15455 PF04186 FxsA cytoplasmic membrane protein ND440_15460 PF10415 Fumarase C C-terminus ND440_15460 PF00206 Lyase ND440_15465 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND440_15470 PF03091 CutA1 divalent ion tolerance protein ND440_15475 PF02683 Cytochrome C biogenesis protein transmembrane region ND440_15475 PF11412 Disulphide bond corrector protein DsbC ND440_15500 PF02350 UDP-N-acetylglucosamine 2-epimerase ND440_15505 PF01370 NAD dependent epimerase/dehydratase family ND440_15510 PF02719 Polysaccharide biosynthesis protein ND440_15510 PF08485 Polysaccharide biosynthesis protein C-terminal ND440_15515 PF00977 Histidine biosynthesis protein ND440_15520 PF00117 Glutamine amidotransferase class-I ND440_15525 PF02540 NAD synthase ND440_15525 PF00795 Carbon-nitrogen hydrolase ND440_15550 PF13472 GDSL-like Lipase/Acylhydrolase family ND440_15550 PF02348 Cytidylyltransferase ND440_15560 PF00483 Nucleotidyl transferase ND440_15570 PF08666 SAF domain ND440_15570 PF03102 NeuB family ND440_15575 PF02350 UDP-N-acetylglucosamine 2-epimerase ND440_15580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND440_15585 PF02719 Polysaccharide biosynthesis protein ND440_15590 PF01206 Sulfurtransferase TusA ND440_15595 PF04143 Sulphur transport ND440_15600 PF00375 Sodium:dicarboxylate symporter family ND440_15605 PF13193 AMP-binding enzyme C-terminal domain ND440_15605 PF00501 AMP-binding enzyme ND440_15605 PF16177 Acetyl-coenzyme A synthetase N-terminus ND440_15610 PF04341 Protein of unknown function, DUF485 ND440_15615 PF00474 Sodium:solute symporter family ND440_15645 PF12724 Flavodoxin domain ND440_15650 PF02386 Cation transport protein ND440_15655 PF09186 Domain of unknown function (DUF1949) ND440_15655 PF01205 Uncharacterized protein family UPF0029 ND440_15660 PF00557 Metallopeptidase family M24 ND440_15665 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND440_15665 PF00378 Enoyl-CoA hydratase/isomerase ND440_15665 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND440_15670 PF00108 Thiolase, N-terminal domain ND440_15670 PF02803 Thiolase, C-terminal domain ND440_15675 PF00175 Oxidoreductase NAD-binding domain ND440_15675 PF00970 Oxidoreductase FAD-binding domain ND440_15680 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ND440_15690 PF02357 Transcription termination factor nusG ND440_15695 PF00490 Delta-aminolevulinic acid dehydratase ND440_15700 PF01026 TatD related DNase ND440_15705 PF00902 Sec-independent protein translocase protein (TatC) ND440_15715 PF02416 mttA/Hcf106 family ND440_15720 PF03109 ABC1 family ND440_15725 PF02036 SCP-2 sterol transfer family ND440_15730 PF01209 ubiE/COQ5 methyltransferase family ND440_15735 PF02646 RmuC family ND440_15740 PF09335 SNARE associated Golgi protein ND440_15745 PF13722 5TM C-terminal transporter carbon starvation CstA ND440_15745 PF02554 Carbon starvation protein CstA ND440_15755 PF01048 Phosphorylase superfamily ND440_15760 PF01738 Dienelactone hydrolase family ND440_15765 PF01717 Cobalamin-independent synthase, Catalytic domain ND440_15765 PF08267 Cobalamin-independent synthase, N-terminal domain ND440_15770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_15770 PF03466 LysR substrate binding domain ND440_15775 PF00892 EamA-like transporter family ND440_15785 PF03009 Glycerophosphoryl diester phosphodiesterase family ND440_15790 PF00005 ABC transporter ND440_15790 PF17912 MalK OB fold domain ND440_15795 PF00528 Binding-protein-dependent transport system inner membrane component ND440_15800 PF00528 Binding-protein-dependent transport system inner membrane component ND440_15805 PF13416 Bacterial extracellular solute-binding protein ND440_15840 PF00005 ABC transporter ND440_15845 PF00005 ABC transporter ND440_15845 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND440_15850 PF02653 Branched-chain amino acid transport system / permease component ND440_15850 PF11862 Domain of unknown function (DUF3382) ND440_15855 PF02653 Branched-chain amino acid transport system / permease component ND440_15860 PF13458 Periplasmic binding protein ND440_15865 PF12568 Acetyltransferase (GNAT) domain, PanZ ND440_15870 PF02595 Glycerate kinase family ND440_15875 PF02447 GntP family permease ND440_15880 PF05651 Putative sugar diacid recognition ND440_15880 PF13556 PucR C-terminal helix-turn-helix domain ND440_15880 PF17853 GGDEF-like domain ND440_15885 PF04545 Sigma-70, region 4 ND440_15885 PF04542 Sigma-70 region 2 ND440_15885 PF00140 Sigma-70 factor, region 1.2 ND440_15890 PF02687 FtsX-like permease family ND440_15890 PF18075 FtsX extracellular domain ND440_15895 PF00005 ABC transporter ND440_15900 PF00448 SRP54-type protein, GTPase domain ND440_15900 PF02881 SRP54-type protein, helical bundle domain ND440_15900 PF00448 SRP54-type protein, GTPase domain ND440_15900 PF02881 SRP54-type protein, helical bundle domain ND440_15910 PF06611 Protein of unknown function (DUF1145) ND440_15925 PF07947 YhhN family ND440_15930 PF00403 Heavy-metal-associated domain ND440_15935 PF01206 Sulfurtransferase TusA ND440_15940 PF02592 Putative vitamin uptake transporter ND440_15945 PF08786 DcrB ND440_15950 PF13183 4Fe-4S dicluster domain ND440_15950 PF02754 Cysteine-rich domain ND440_15955 PF00890 FAD binding domain ND440_15960 PF04324 BFD-like [2Fe-2S] binding domain ND440_15960 PF01266 FAD dependent oxidoreductase ND440_15970 PF07690 Major Facilitator Superfamily ND440_15975 PF03009 Glycerophosphoryl diester phosphodiesterase family ND440_15985 PF12146 Serine aminopeptidase, S33 ND440_15990 PF01810 LysE type translocator ND440_15995 PF00570 HRDC domain ND440_15995 PF00271 Helicase conserved C-terminal domain ND440_15995 PF00270 DEAD/DEAH box helicase ND440_15995 PF16124 RecQ zinc-binding ND440_15995 PF09382 RQC domain ND440_16000 PF02253 Phospholipase A1 ND440_16005 PF03061 Thioesterase superfamily ND440_16010 PF00892 EamA-like transporter family ND440_16015 PF01544 CorA-like Mg2+ transporter protein ND440_16025 PF09370 Phosphoenolpyruvate hydrolase-like ND440_16040 PF13361 UvrD-like helicase C-terminal domain ND440_16040 PF00580 UvrD/REP helicase N-terminal domain ND440_16045 PF13419 Haloacid dehalogenase-like hydrolase ND440_16050 PF00589 Phage integrase family ND440_16050 PF02899 Phage integrase, N-terminal SAM-like domain ND440_16055 PF04340 Protein of unknown function, DUF484 ND440_16060 PF01678 Diaminopimelate epimerase ND440_16065 PF13627 Prokaryotic lipoprotein-attachment site ND440_16070 PF01491 Frataxin-like domain ND440_16075 PF01295 Adenylate cyclase, class-I ND440_16075 PF12633 Adenylate cyclase NT domain ND440_16080 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ND440_16080 PF03900 Porphobilinogen deaminase, C-terminal domain ND440_16085 PF02602 Uroporphyrinogen-III synthase HemD ND440_16090 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ND440_16095 PF07719 Tetratricopeptide repeat ND440_16095 PF07219 HemY protein N-terminus ND440_16120 PF00324 Amino acid permease ND440_16125 PF03808 Glycosyl transferase WecB/TagA/CpsF family ND440_16130 PF06899 WzyE protein, O-antigen assembly polymerase ND440_16135 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ND440_16140 PF01943 Polysaccharide biosynthesis protein ND440_16145 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND440_16155 PF00483 Nucleotidyl transferase ND440_16160 PF16363 GDP-mannose 4,6 dehydratase ND440_16165 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND440_16165 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND440_16165 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND440_16170 PF02350 UDP-N-acetylglucosamine 2-epimerase ND440_16175 PF02706 Chain length determinant protein ND440_16180 PF00953 Glycosyl transferase family 4 ND440_16185 PF07497 Rho termination factor, RNA-binding domain ND440_16185 PF07498 Rho termination factor, N-terminal domain ND440_16185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND440_16190 PF00085 Thioredoxin ND440_16195 PF00270 DEAD/DEAH box helicase ND440_16195 PF00271 Helicase conserved C-terminal domain ND440_16200 PF02541 Ppx/GppA phosphatase family ND440_16205 PF00580 UvrD/REP helicase N-terminal domain ND440_16205 PF13361 UvrD-like helicase C-terminal domain ND440_16215 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ND440_16215 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ND440_16220 PF03466 LysR substrate binding domain ND440_16220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_16225 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND440_16225 PF18416 N-acetylglucosamine binding protein domain 2 ND440_16230 PF00291 Pyridoxal-phosphate dependent enzyme ND440_16230 PF00585 C-terminal regulatory domain of Threonine dehydratase ND440_16235 PF00920 Dehydratase family ND440_16240 PF01063 Amino-transferase class IV ND440_16250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND440_16250 PF00205 Thiamine pyrophosphate enzyme, central domain ND440_16250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND440_16255 PF08046 IlvGEDA operon leader peptide ND440_16260 PF01078 Magnesium chelatase, subunit ChlI ND440_16260 PF13335 Magnesium chelatase, subunit ChlI C-terminal ND440_16265 PF04219 Protein of unknown function, DUF ND440_16270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_16270 PF03466 LysR substrate binding domain ND440_16325 PF01177 Asp/Glu/Hydantoin racemase ND440_16330 PF00593 TonB dependent receptor ND440_16330 PF07715 TonB-dependent Receptor Plug Domain ND440_16335 PF05958 tRNA (Uracil-5-)-methyltransferase ND440_16340 PF07226 Protein of unknown function (DUF1422) ND440_16345 PF00440 Bacterial regulatory proteins, tetR family ND440_16350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND440_16350 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND440_16355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_16355 PF03466 LysR substrate binding domain ND440_16360 PF00462 Glutaredoxin ND440_16360 PF08534 Redoxin ND440_16365 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND440_16365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND440_16385 PF00529 HlyD membrane-fusion protein of T1SS ND440_16390 PF00664 ABC transporter transmembrane region ND440_16390 PF00005 ABC transporter ND440_16400 PF07715 TonB-dependent Receptor Plug Domain ND440_16400 PF00593 TonB dependent receptor ND440_16405 PF14698 Argininosuccinate lyase C-terminal ND440_16405 PF00206 Lyase ND440_16410 PF00764 Arginosuccinate synthase ND440_16415 PF00696 Amino acid kinase family ND440_16420 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND440_16420 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND440_16425 PF07687 Peptidase dimerisation domain ND440_16425 PF01546 Peptidase family M20/M25/M40 ND440_16430 PF00311 Phosphoenolpyruvate carboxylase ND440_16440 PF02219 Methylenetetrahydrofolate reductase ND440_16460 PF00742 Homoserine dehydrogenase ND440_16460 PF00696 Amino acid kinase family ND440_16460 PF03447 Homoserine dehydrogenase, NAD binding domain ND440_16465 PF01053 Cys/Met metabolism PLP-dependent enzyme ND440_16470 PF01340 Met Apo-repressor, MetJ ND440_16475 PF01197 Ribosomal protein L31 ND440_16480 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ND440_16480 PF17764 3′ DNA-binding domain (3′BD) ND440_16480 PF00271 Helicase conserved C-terminal domain ND440_16480 PF18074 Primosomal protein N C-terminal domain ND440_16480 PF00270 DEAD/DEAH box helicase ND440_16485 PF00356 Bacterial regulatory proteins, lacI family ND440_16490 PF05036 Sporulation related domain ND440_16495 PF00227 Proteasome subunit ND440_16500 PF10431 C-terminal, D2-small domain, of ClpB protein ND440_16500 PF07724 AAA domain (Cdc48 subfamily) ND440_16500 PF00004 ATPase family associated with various cellular activities (AAA) ND440_16505 PF01040 UbiA prenyltransferase family ND440_16510 PF03737 Aldolase/RraA ND440_16515 PF06005 Cell division protein ZapB ND440_16520 PF00230 Major intrinsic protein ND440_16525 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND440_16525 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND440_16530 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ND440_16535 PF07690 Major Facilitator Superfamily ND440_16540 PF00970 Oxidoreductase FAD-binding domain ND440_16540 PF00175 Oxidoreductase NAD-binding domain ND440_16545 PF05656 Protein of unknown function (DUF805) ND440_16550 PF07305 Protein of unknown function (DUF1454) ND440_16555 PF00121 Triosephosphate isomerase ND440_16565 PF00365 Phosphofructokinase ND440_16570 PF16916 Dimerisation domain of Zinc Transporter ND440_16570 PF01545 Cation efflux family ND440_16575 PF07813 LTXXQ motif family protein ND440_16580 PF00486 Transcriptional regulatory protein, C terminal ND440_16580 PF00072 Response regulator receiver domain ND440_16585 PF16527 Two-component sensor protein CpxA, periplasmic domain ND440_16585 PF00672 HAMP domain ND440_16585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_16585 PF00512 His Kinase A (phospho-acceptor) domain ND440_16590 PF00588 SpoU rRNA Methylase family ND440_16595 PF00132 Bacterial transferase hexapeptide (six repeats) ND440_16595 PF06426 Serine acetyltransferase, N-terminal ND440_16600 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ND440_16600 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ND440_16605 PF02556 Preprotein translocase subunit SecB ND440_16610 PF00462 Glutaredoxin ND440_16615 PF00581 Rhodanese-like domain ND440_16620 PF01676 Metalloenzyme superfamily ND440_16620 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ND440_16625 PF01551 Peptidase family M23 ND440_16630 PF04748 Divergent polysaccharide deacetylase ND440_16635 PF00107 Zinc-binding dehydrogenase ND440_16635 PF08240 Alcohol dehydrogenase GroES-like domain ND440_16640 PF00155 Aminotransferase class I and II ND440_16645 PF01370 NAD dependent epimerase/dehydratase family ND440_16650 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND440_16655 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND440_16660 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ND440_16665 PF00535 Glycosyl transferase family 2 ND440_16670 PF01467 Cytidylyltransferase-like ND440_16675 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ND440_16675 PF06827 Zinc finger found in FPG and IleRS ND440_16675 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ND440_16680 PF00471 Ribosomal protein L33 ND440_16685 PF00830 Ribosomal L28 family ND440_16690 PF04002 RadC-like JAB domain ND440_16695 PF02441 Flavoprotein ND440_16695 PF04127 DNA / pantothenate metabolism flavoprotein ND440_16700 PF00692 dUTPase ND440_16705 PF00440 Bacterial regulatory proteins, tetR family ND440_16710 PF00156 Phosphoribosyl transferase domain ND440_16715 PF03725 3' exoribonuclease family, domain 2 ND440_16715 PF01138 3' exoribonuclease family, domain 1 ND440_16720 PF08340 Domain of unknown function (DUF1732) ND440_16720 PF03755 YicC-like family, N-terminal region ND440_16755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND440_16755 PF03466 LysR substrate binding domain ND440_16765 PF13426 PAS domain ND440_16765 PF00563 EAL domain ND440_16765 PF00990 Diguanylate cyclase, GGDEF domain ND440_16770 PF00378 Enoyl-CoA hydratase/isomerase ND440_16775 PF07670 Nucleoside recognition ND440_16775 PF07662 Na+ dependent nucleoside transporter C-terminus ND440_16775 PF01773 Na+ dependent nucleoside transporter N-terminus ND440_16785 PF03458 UPF0126 domain ND440_16790 PF03120 NAD-dependent DNA ligase OB-fold domain ND440_16790 PF01653 NAD-dependent DNA ligase adenylation domain ND440_16795 PF00625 Guanylate kinase ND440_16800 PF01192 RNA polymerase Rpb6 ND440_16805 PF13291 ACT domain ND440_16805 PF04607 Region found in RelA / SpoT proteins ND440_16805 PF02824 TGS domain ND440_16810 PF00588 SpoU rRNA Methylase family ND440_16810 PF12105 SpoU, rRNA methylase, C-terminal ND440_16815 PF00270 DEAD/DEAH box helicase ND440_16815 PF17191 RecG wedge domain ND440_16815 PF00271 Helicase conserved C-terminal domain ND440_16820 PF03616 Sodium/glutamate symporter ND440_16825 PF00860 Permease family ND440_16830 PF05170 AsmA family ND440_16835 PF00583 Acetyltransferase (GNAT) family ND440_16835 PF09500 Putative thioesterase (yiiD_Cterm) ND440_16840 PF02580 D-Tyr-tRNA(Tyr) deacylase ND440_16845 PF03631 Virulence factor BrkB ND440_16850 PF13419 Haloacid dehalogenase-like hydrolase ND440_16855 PF03144 Elongation factor Tu domain 2 ND440_16855 PF00679 Elongation factor G C-terminus ND440_16855 PF00009 Elongation factor Tu GTP binding domain ND440_16860 PF00120 Glutamine synthetase, catalytic domain ND440_16860 PF03951 Glutamine synthetase, beta-Grasp domain ND440_16865 PF00989 PAS fold ND440_16865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_16865 PF00512 His Kinase A (phospho-acceptor) domain ND440_16870 PF02954 Bacterial regulatory protein, Fis family ND440_16870 PF00072 Response regulator receiver domain ND440_16870 PF00158 Sigma-54 interaction domain ND440_16875 PF04055 Radical SAM superfamily ND440_16875 PF06969 HemN C-terminal domain ND440_16880 PF04220 Der GTPase activator (YihI) ND440_16885 PF01926 50S ribosome-binding GTPase ND440_16890 PF01367 5'-3' exonuclease, C-terminal SAM fold ND440_16890 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND440_16890 PF01612 3'-5' exonuclease ND440_16890 PF00476 DNA polymerase family A ND440_16895 PF01323 DSBA-like thioredoxin domain ND440_16900 PF01636 Phosphotransferase enzyme family ND440_16905 PF06288 Protein of unknown function (DUF1040) ND440_16910 PF12804 MobA-like NTP transferase domain ND440_16915 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ND440_16940 PF07729 FCD domain ND440_16940 PF00392 Bacterial regulatory proteins, gntR family ND440_16945 PF00356 Bacterial regulatory proteins, lacI family ND440_16950 PF00294 pfkB family carbohydrate kinase ND440_16955 PF13407 Periplasmic binding protein domain ND440_16960 PF02653 Branched-chain amino acid transport system / permease component ND440_16965 PF00005 ABC transporter ND440_16970 PF05025 RbsD / FucU transport protein family ND440_16975 PF02705 K+ potassium transporter ND440_16980 PF17868 AAA lid domain ND440_16980 PF07728 AAA domain (dynein-related subfamily) ND440_16980 PF12592 Protein of unknown function (DUF3763) ND440_16985 PF05762 VWA domain containing CoxE-like protein ND440_16995 PF03590 Aspartate-ammonia ligase ND440_17000 PF01037 Lrp/AsnC ligand binding domain ND440_17005 PF00258 Flavodoxin ND440_17010 PF01134 Glucose inhibited division protein A ND440_17010 PF13932 GidA associated domain ND440_17015 PF02527 rRNA small subunit methyltransferase G ND440_17020 PF03899 ATP synthase I chain ND440_17025 PF00119 ATP synthase A chain ND440_17030 PF00137 ATP synthase subunit C ND440_17035 PF00430 ATP synthase B/B' CF(0) ND440_17040 PF00213 ATP synthase delta (OSCP) subunit ND440_17045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND440_17045 PF00306 ATP synthase alpha/beta chain, C terminal domain ND440_17045 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND440_17050 PF00231 ATP synthase ND440_17055 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND440_17055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND440_17060 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ND440_17060 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ND440_17065 PF12804 MobA-like NTP transferase domain ND440_17065 PF00132 Bacterial transferase hexapeptide (six repeats) ND440_17070 PF01380 SIS domain ND440_17075 PF12849 PBP superfamily domain ND440_17080 PF00528 Binding-protein-dependent transport system inner membrane component ND440_17085 PF00528 Binding-protein-dependent transport system inner membrane component ND440_17090 PF00005 ABC transporter ND440_17095 PF01895 PhoU domain ND440_17100 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND440_17105 PF00528 Binding-protein-dependent transport system inner membrane component ND440_17110 PF00528 Binding-protein-dependent transport system inner membrane component ND440_17115 PF00860 Permease family ND440_17120 PF02203 Tar ligand binding domain homologue ND440_17120 PF00672 HAMP domain ND440_17120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND440_17130 PF02753 Pili assembly chaperone PapD, C-terminal domain ND440_17130 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND440_17135 PF13954 PapC N-terminal domain ND440_17135 PF00577 Outer membrane usher protein ND440_17135 PF13953 PapC C-terminal domain ND440_17145 PF01926 50S ribosome-binding GTPase ND440_17145 PF12631 MnmE helical domain ND440_17145 PF10396 GTP-binding protein TrmE N-terminus ND440_17150 PF02096 60Kd inner membrane protein ND440_17150 PF14849 YidC periplasmic domain ND440_17155 PF01809 Putative membrane protein insertion efficiency factor ND440_17160 PF00825 Ribonuclease P ND440_17165 PF00468 Ribosomal protein L34 ND440_17170 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND440_17170 PF00072 Response regulator receiver domain ND440_17170 PF01627 Hpt domain ND440_17170 PF00672 HAMP domain ND440_17170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND440_17170 PF00512 His Kinase A (phospho-acceptor) domain ND440_17175 PF02796 Helix-turn-helix domain of resolvase ND440_17175 PF00239 Resolvase, N terminal domain ND440_17180 PF01526 Tn3 transposase DDE domain ND440_17180 PF13700 Domain of unknown function (DUF4158) ND440_17210 PF00239 Resolvase, N terminal domain ND440_17210 PF02796 Helix-turn-helix domain of resolvase ND440_17215 PF00589 Phage integrase family ND440_17260 PF13438 Domain of unknown function (DUF4113) ND440_17260 PF00817 impB/mucB/samB family ND440_17260 PF11799 impB/mucB/samB family C-terminal domain ND440_17260 PF11798 IMS family HHH motif ND440_17265 PF00717 Peptidase S24-like ND440_17275 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB ND440_17280 PF01381 Helix-turn-helix ND440_17290 PF06406 StbA protein ND440_17310 PF06924 Protein of unknown function (DUF1281) ND440_17335 PF02195 ParB-like nuclease domain ND440_17345 PF06952 PsiA protein ND440_17375 PF06067 Domain of unknown function (DUF932) ND440_17395 PF18821 Large polyvalent protein-associated domain 7 ND440_17395 PF03432 Relaxase/Mobilisation nuclease domain ND440_17405 PF13091 PLD-like domain ND440_17500 PF00437 Type II/IV secretion system protein ND440_17520 PF04917 Bacterial shufflon protein, N-terminal constant region ND440_17545 PF00437 Type II/IV secretion system protein ND440_17590 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase)