locus-tag class description ND449_00005 PF00308 Bacterial dnaA protein ND449_00005 PF08299 Bacterial dnaA protein helix-turn-helix ND449_00005 PF11638 DnaA N-terminal domain ND449_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ND449_00010 PF02767 DNA polymerase III beta subunit, central domain ND449_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ND449_00015 PF02463 RecF/RecN/SMC N terminal domain ND449_00020 PF00204 DNA gyrase B ND449_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ND449_00020 PF18053 DNA gyrase B subunit insert domain ND449_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_00020 PF01751 Toprim domain ND449_00030 PF12566 Protein of unknown function (DUF3748) ND449_00030 PF07676 WD40-like Beta Propeller Repeat ND449_00035 PF07119 Protein of unknown function (DUF1375) ND449_00040 PF00011 Hsp20/alpha crystallin family ND449_00045 PF00011 Hsp20/alpha crystallin family ND449_00050 PF06826 Predicted Permease Membrane Region ND449_00050 PF02080 TrkA-C domain ND449_00055 PF00155 Aminotransferase class I and II ND449_00060 PF13488 Glycine zipper ND449_00060 PF00691 OmpA family ND449_00080 PF03352 Methyladenine glycosylase ND449_00090 PF02091 Glycyl-tRNA synthetase alpha subunit ND449_00095 PF02092 Glycyl-tRNA synthetase beta subunit ND449_00095 PF05746 DALR anticodon binding domain ND449_00100 PF11254 Protein of unknown function (DUF3053) ND449_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND449_00130 PF02378 Phosphotransferase system, EIIC ND449_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND449_00135 PF01232 Mannitol dehydrogenase Rossmann domain ND449_00135 PF08125 Mannitol dehydrogenase C-terminal domain ND449_00140 PF05068 Mannitol repressor ND449_00145 PF10928 Protein of unknown function (DUF2810) ND449_00150 PF03473 MOSC domain ND449_00150 PF03475 3-alpha domain ND449_00155 PF00672 HAMP domain ND449_00155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND449_00155 PF02203 Tar ligand binding domain homologue ND449_00160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND449_00160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND449_00165 PF02634 FdhD/NarQ family ND449_00175 PF09163 Formate dehydrogenase N, transmembrane ND449_00175 PF13247 4Fe-4S dicluster domain ND449_00180 PF01292 Prokaryotic cytochrome b561 ND449_00185 PF04216 Protein involved in formate dehydrogenase formation ND449_00190 PF03841 L-seryl-tRNA selenium transferase ND449_00190 PF12390 Selenocysteine synthase N terminal ND449_00195 PF03144 Elongation factor Tu domain 2 ND449_00195 PF00009 Elongation factor Tu GTP binding domain ND449_00195 PF09107 Elongation factor SelB, winged helix ND449_00195 PF09106 Elongation factor SelB, winged helix ND449_00200 PF01427 D-ala-D-ala dipeptidase ND449_00205 PF07690 Major Facilitator Superfamily ND449_00210 PF01757 Acyltransferase family ND449_00220 PF13356 Arm DNA-binding domain ND449_00220 PF14659 Phage integrase, N-terminal SAM-like domain ND449_00220 PF00589 Phage integrase family ND449_00230 PF04606 Ogr/Delta-like zinc finger ND449_00255 PF17391 Urocanase N-terminal domain ND449_00255 PF17392 Urocanase C-terminal domain ND449_00255 PF01175 Urocanase Rossmann-like domain ND449_00260 PF00221 Aromatic amino acid lyase ND449_00265 PF00324 Amino acid permease ND449_00275 PF12146 Serine aminopeptidase, S33 ND449_00280 PF08019 Phosphoethanolamine transferase EptA/EptB ND449_00280 PF00884 Sulfatase ND449_00285 PF00196 Bacterial regulatory proteins, luxR family ND449_00285 PF00072 Response regulator receiver domain ND449_00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_00290 PF07730 Histidine kinase ND449_00290 PF05231 MASE1 ND449_00295 PF07690 Major Facilitator Superfamily ND449_00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND449_00310 PF00528 Binding-protein-dependent transport system inner membrane component ND449_00315 PF00528 Binding-protein-dependent transport system inner membrane component ND449_00315 PF12911 N-terminal TM domain of oligopeptide transport permease C ND449_00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND449_00320 PF00005 ABC transporter ND449_00325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND449_00325 PF00005 ABC transporter ND449_00330 PF11658 Cellulose biosynthesis protein BcsG ND449_00335 PF11120 Cellulose biosynthesis protein BcsF ND449_00340 PF10995 Cellulose biosynthesis GIL ND449_00350 PF06564 Cellulose biosynthesis protein BcsQ ND449_00355 PF07238 PilZ domain ND449_00355 PF00535 Glycosyl transferase family 2 ND449_00355 PF03552 Cellulose synthase ND449_00360 PF03170 Bacterial cellulose synthase subunit ND449_00365 PF01270 Glycosyl hydrolases family 8 ND449_00370 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ND449_00375 PF00990 Diguanylate cyclase, GGDEF domain ND449_00375 PF17154 Gammaproteobacterial periplasmic sensor domain ND449_00375 PF00672 HAMP domain ND449_00375 PF00563 EAL domain ND449_00380 PF00375 Sodium:dicarboxylate symporter family ND449_00385 PF00675 Insulinase (Peptidase family M16) ND449_00385 PF05193 Peptidase M16 inactive domain ND449_00390 PF00294 pfkB family carbohydrate kinase ND449_00395 PF01361 Tautomerase enzyme ND449_00400 PF00563 EAL domain ND449_00405 PF02611 CDP-diacylglycerol pyrophosphatase ND449_00410 PF03631 Virulence factor BrkB ND449_00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_00415 PF03466 LysR substrate binding domain ND449_00420 PF00375 Sodium:dicarboxylate symporter family ND449_00425 PF01053 Cys/Met metabolism PLP-dependent enzyme ND449_00430 PF02369 Bacterial Ig-like domain (group 1) ND449_00430 PF11924 Inverse autotransporter, beta-domain ND449_00430 PF07979 Intimin C-type lectin domain ND449_00430 PF09134 Invasin, domain 3 ND449_00435 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND449_00435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND449_00440 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ND449_00445 PF01432 Peptidase family M3 ND449_00450 PF04445 Putative SAM-dependent methyltransferase ND449_00455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ND449_00455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ND449_00460 PF00582 Universal stress protein family ND449_00465 PF10625 Universal stress protein B (UspB) ND449_00470 PF01384 Phosphate transporter family ND449_00480 PF01810 LysE type translocator ND449_00485 PF00583 Acetyltransferase (GNAT) family ND449_00495 PF02678 Pirin ND449_00495 PF17954 Quercetinase C-terminal cupin domain ND449_00500 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND449_00500 PF00356 Bacterial regulatory proteins, lacI family ND449_00505 PF02447 GntP family permease ND449_00510 PF01202 Shikimate kinase ND449_00515 PF01914 MarC family integral membrane protein ND449_00520 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND449_00520 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND449_00525 PF06580 Histidine kinase ND449_00525 PF07694 5TMR of 5TMR-LYT ND449_00530 PF02806 Alpha amylase, C-terminal all-beta domain ND449_00530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND449_00530 PF00128 Alpha amylase, catalytic domain ND449_00535 PF00128 Alpha amylase, catalytic domain ND449_00535 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND449_00535 PF18390 Glycogen debranching enzyme C-terminal domain ND449_00540 PF00483 Nucleotidyl transferase ND449_00545 PF00534 Glycosyl transferases group 1 ND449_00545 PF08323 Starch synthase catalytic domain ND449_00550 PF00343 Carbohydrate phosphorylase ND449_00555 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ND449_00555 PF01266 FAD dependent oxidoreductase ND449_00560 PF08220 DeoR-like helix-turn-helix domain ND449_00560 PF00455 DeoR C terminal sensor domain ND449_00565 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ND449_00565 PF01694 Rhomboid family ND449_00570 PF00581 Rhodanese-like domain ND449_00575 PF00196 Bacterial regulatory proteins, luxR family ND449_00575 PF17874 MalT-like TPR region ND449_00580 PF00343 Carbohydrate phosphorylase ND449_00585 PF02446 4-alpha-glucanotransferase ND449_00590 PF01521 Iron-sulphur cluster biosynthesis ND449_00590 PF01106 NifU-like domain ND449_00595 PF00156 Phosphoribosyl transferase domain ND449_00600 PF00561 alpha/beta hydrolase fold ND449_00610 PF09012 FeoC like transcriptional regulator ND449_00615 PF07664 Ferrous iron transport protein B C terminus ND449_00615 PF07670 Nucleoside recognition ND449_00615 PF02421 Ferrous iron transport protein B ND449_00615 PF17910 FeoB cytosolic helical domain ND449_00620 PF04023 FeoA domain ND449_00625 PF16921 Tex protein YqgF-like domain ND449_00625 PF09371 Tex-like protein N-terminal domain ND449_00625 PF00575 S1 RNA binding domain ND449_00625 PF17674 HHH domain ND449_00650 PF03449 Transcription elongation factor, N-terminal ND449_00650 PF01272 Transcription elongation factor, GreA/GreB, C-term ND449_00655 PF00486 Transcriptional regulatory protein, C terminal ND449_00655 PF00072 Response regulator receiver domain ND449_00660 PF00672 HAMP domain ND449_00660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_00660 PF00512 His Kinase A (phospho-acceptor) domain ND449_00665 PF01293 Phosphoenolpyruvate carboxykinase ND449_00670 PF01430 Hsp33 protein ND449_00675 PF01479 S4 domain ND449_00680 PF13419 Haloacid dehalogenase-like hydrolase ND449_00685 PF07095 Intracellular growth attenuator protein IgaA ND449_00690 PF00293 NUDIX domain ND449_00695 PF00905 Penicillin binding protein transpeptidase domain ND449_00695 PF00912 Transglycosylase ND449_00695 PF17092 Penicillin-binding protein OB-like domain ND449_00720 PF00263 Bacterial type II and III secretion system protein ND449_00720 PF03958 Bacterial type II/III secretion system short domain ND449_00725 PF01202 Shikimate kinase ND449_00730 PF01761 3-dehydroquinate synthase ND449_00735 PF05036 Sporulation related domain ND449_00740 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND449_00745 PF00834 Ribulose-phosphate 3 epimerase family ND449_00750 PF13419 Haloacid dehalogenase-like hydrolase ND449_00755 PF00579 tRNA synthetases class I (W and Y) ND449_00760 PF10414 Sirohaem synthase dimerisation region ND449_00760 PF14824 Sirohaem biosynthesis protein central ND449_00760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND449_00765 PF01226 Formate/nitrite transporter ND449_00770 PF13806 Rieske-like [2Fe-2S] domain ND449_00775 PF04324 BFD-like [2Fe-2S] binding domain ND449_00775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND449_00775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND449_00775 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND449_00775 PF18267 Rubredoxin NAD+ reductase C-terminal domain ND449_00780 PF07969 Amidohydrolase family ND449_00785 PF07690 Major Facilitator Superfamily ND449_00800 PF00356 Bacterial regulatory proteins, lacI family ND449_00805 PF02056 Family 4 glycosyl hydrolase ND449_00805 PF11975 Family 4 glycosyl hydrolase C-terminal domain ND449_00810 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND449_00815 PF00117 Glutamine amidotransferase class-I ND449_00820 PF00202 Aminotransferase class-III ND449_00825 PF12805 FUSC-like inner membrane protein yccS ND449_00830 PF13545 Crp-like helix-turn-helix domain ND449_00830 PF00027 Cyclic nucleotide-binding domain ND449_00835 PF02566 OsmC-like protein ND449_00855 PF00156 Phosphoribosyl transferase domain ND449_00860 PF00291 Pyridoxal-phosphate dependent enzyme ND449_00865 PF00485 Phosphoribulokinase / Uridine kinase family ND449_00870 PF06794 Uncharacterised protein family (UPF0270) ND449_00875 PF00561 alpha/beta hydrolase fold ND449_00880 PF01810 LysE type translocator ND449_00885 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND449_00890 PF00535 Glycosyl transferase family 2 ND449_00895 PF00005 ABC transporter ND449_00895 PF12848 ABC transporter ND449_00900 PF02525 Flavodoxin-like fold ND449_00905 PF02254 TrkA-N domain ND449_00905 PF00999 Sodium/hydrogen exchanger family ND449_00910 PF09526 Probable metal-binding protein (DUF2387) ND449_00915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND449_00920 PF04102 SlyX ND449_00925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND449_00925 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND449_00930 PF13309 HTH domain ND449_00930 PF08348 YheO-like PAS domain ND449_00935 PF02635 DsrE/DsrF-like family ND449_00940 PF02635 DsrE/DsrF-like family ND449_00945 PF04077 DsrH like protein ND449_00950 PF00164 Ribosomal protein S12/S23 ND449_00955 PF00177 Ribosomal protein S7p/S5e ND449_00960 PF03144 Elongation factor Tu domain 2 ND449_00960 PF00009 Elongation factor Tu GTP binding domain ND449_00960 PF14492 Elongation Factor G, domain II ND449_00960 PF03764 Elongation factor G, domain IV ND449_00960 PF00679 Elongation factor G C-terminus ND449_00965 PF03144 Elongation factor Tu domain 2 ND449_00965 PF00009 Elongation factor Tu GTP binding domain ND449_00965 PF03143 Elongation factor Tu C-terminal domain ND449_00970 PF04324 BFD-like [2Fe-2S] binding domain ND449_00975 PF00210 Ferritin-like domain ND449_00980 PF00338 Ribosomal protein S10p/S20e ND449_00985 PF00297 Ribosomal protein L3 ND449_00990 PF00573 Ribosomal protein L4/L1 family ND449_00995 PF00276 Ribosomal protein L23 ND449_01000 PF00181 Ribosomal Proteins L2, RNA binding domain ND449_01000 PF03947 Ribosomal Proteins L2, C-terminal domain ND449_01005 PF00203 Ribosomal protein S19 ND449_01010 PF00237 Ribosomal protein L22p/L17e ND449_01015 PF07650 KH domain ND449_01015 PF00189 Ribosomal protein S3, C-terminal domain ND449_01020 PF00252 Ribosomal protein L16p/L10e ND449_01025 PF00831 Ribosomal L29 protein ND449_01030 PF00366 Ribosomal protein S17 ND449_01035 PF00238 Ribosomal protein L14p/L23e ND449_01040 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ND449_01040 PF00467 KOW motif ND449_01045 PF00281 Ribosomal protein L5 ND449_01045 PF00673 ribosomal L5P family C-terminus ND449_01050 PF00253 Ribosomal protein S14p/S29e ND449_01055 PF00410 Ribosomal protein S8 ND449_01060 PF00347 Ribosomal protein L6 ND449_01065 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ND449_01070 PF00333 Ribosomal protein S5, N-terminal domain ND449_01070 PF03719 Ribosomal protein S5, C-terminal domain ND449_01075 PF00327 Ribosomal protein L30p/L7e ND449_01080 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ND449_01085 PF00344 SecY translocase ND449_01090 PF00444 Ribosomal protein L36 ND449_01095 PF00416 Ribosomal protein S13/S18 ND449_01100 PF00411 Ribosomal protein S11 ND449_01105 PF01479 S4 domain ND449_01105 PF00163 Ribosomal protein S4/S9 N-terminal domain ND449_01110 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ND449_01110 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ND449_01110 PF01000 RNA polymerase Rpb3/RpoA insert domain ND449_01115 PF01196 Ribosomal protein L17 ND449_01120 PF13411 MerR HTH family regulatory protein ND449_01125 PF03889 Alternative ribosome-rescue factor A ND449_01130 PF01741 Large-conductance mechanosensitive channel, MscL ND449_01135 PF02080 TrkA-C domain ND449_01135 PF02254 TrkA-N domain ND449_01140 PF01189 16S rRNA methyltransferase RsmB/F ND449_01140 PF01029 NusB family ND449_01145 PF02911 Formyl transferase, C-terminal domain ND449_01145 PF00551 Formyl transferase ND449_01150 PF01327 Polypeptide deformylase ND449_01155 PF17782 DprA winged helix domain ND449_01155 PF02481 DNA recombination-mediator protein A ND449_01160 PF04361 Protein of unknown function (DUF494) ND449_01165 PF01396 Topoisomerase DNA binding C4 zinc finger ND449_01170 PF01300 Telomere recombination ND449_01175 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ND449_01175 PF08501 Shikimate dehydrogenase substrate binding domain ND449_01175 PF01488 Shikimate / quinate 5-dehydrogenase ND449_01180 PF00132 Bacterial transferase hexapeptide (six repeats) ND449_01210 PF00474 Sodium:solute symporter family ND449_01215 PF04341 Protein of unknown function, DUF485 ND449_01220 PF00501 AMP-binding enzyme ND449_01220 PF16177 Acetyl-coenzyme A synthetase N-terminus ND449_01220 PF13193 AMP-binding enzyme C-terminal domain ND449_01225 PF00375 Sodium:dicarboxylate symporter family ND449_01235 PF04143 Sulphur transport ND449_01240 PF01206 Sulfurtransferase TusA ND449_01245 PF02719 Polysaccharide biosynthesis protein ND449_01250 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND449_01255 PF02350 UDP-N-acetylglucosamine 2-epimerase ND449_01260 PF03102 NeuB family ND449_01260 PF08666 SAF domain ND449_01270 PF00483 Nucleotidyl transferase ND449_01280 PF13472 GDSL-like Lipase/Acylhydrolase family ND449_01280 PF02348 Cytidylyltransferase ND449_01305 PF00795 Carbon-nitrogen hydrolase ND449_01305 PF02540 NAD synthase ND449_01310 PF00117 Glutamine amidotransferase class-I ND449_01315 PF00977 Histidine biosynthesis protein ND449_01320 PF08485 Polysaccharide biosynthesis protein C-terminal ND449_01320 PF02719 Polysaccharide biosynthesis protein ND449_01325 PF01370 NAD dependent epimerase/dehydratase family ND449_01330 PF02350 UDP-N-acetylglucosamine 2-epimerase ND449_01355 PF11412 Disulphide bond corrector protein DsbC ND449_01355 PF02683 Cytochrome C biogenesis protein transmembrane region ND449_01360 PF03091 CutA1 divalent ion tolerance protein ND449_01365 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND449_01370 PF10415 Fumarase C C-terminus ND449_01370 PF00206 Lyase ND449_01375 PF04186 FxsA cytoplasmic membrane protein ND449_01380 PF00166 Chaperonin 10 Kd subunit ND449_01385 PF00118 TCP-1/cpn60 chaperonin family ND449_01390 PF13698 Domain of unknown function (DUF4156) ND449_01395 PF04055 Radical SAM superfamily ND449_01400 PF09285 Elongation factor P, C-terminal ND449_01400 PF01132 Elongation factor P (EF-P) OB domain ND449_01400 PF08207 Elongation factor P (EF-P) KOW-like domain ND449_01405 PF18416 N-acetylglucosamine binding protein domain 2 ND449_01405 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND449_01410 PF00196 Bacterial regulatory proteins, luxR family ND449_01420 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND449_01420 PF02753 Pili assembly chaperone PapD, C-terminal domain ND449_01425 PF13953 PapC C-terminal domain ND449_01425 PF13954 PapC N-terminal domain ND449_01425 PF00577 Outer membrane usher protein ND449_01430 PF00419 Fimbrial protein ND449_01435 PF00893 Small Multidrug Resistance protein ND449_01440 PF08212 Lipocalin-like domain ND449_01445 PF02313 Fumarate reductase subunit D ND449_01450 PF02300 Fumarate reductase subunit C ND449_01455 PF13085 2Fe-2S iron-sulfur cluster binding domain ND449_01455 PF13183 4Fe-4S dicluster domain ND449_01460 PF00890 FAD binding domain ND449_01460 PF02910 Fumarate reductase flavoprotein C-term ND449_01465 PF00152 tRNA synthetases class II (D, K and N) ND449_01470 PF00924 Mechanosensitive ion channel ND449_01470 PF12795 Mechanosensitive ion channel porin domain ND449_01470 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND449_01475 PF02666 Phosphatidylserine decarboxylase ND449_01480 PF03193 RsgA GTPase ND449_01485 PF00929 Exonuclease ND449_01505 PF08331 Domain of unknown function (DUF1730) ND449_01510 PF01256 Carbohydrate kinase ND449_01510 PF03853 YjeF-related protein N-terminus ND449_01515 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ND449_01520 PF01520 N-acetylmuramoyl-L-alanine amidase ND449_01525 PF01119 DNA mismatch repair protein, C-terminal domain ND449_01525 PF08676 MutL C terminal dimerisation domain ND449_01535 PF17209 Hfq protein ND449_01540 PF01926 50S ribosome-binding GTPase ND449_01540 PF16360 GTP-binding GTPase Middle Region ND449_01540 PF13167 GTP-binding GTPase N-terminal ND449_01545 PF12221 Bacterial membrane protein N terminal ND449_01545 PF01145 SPFH domain / Band 7 family ND449_01550 PF01145 SPFH domain / Band 7 family ND449_01555 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ND449_01560 PF00709 Adenylosuccinate synthetase ND449_01565 PF02082 Transcriptional regulator ND449_01570 PF08206 Ribonuclease B OB domain ND449_01570 PF00773 RNB domain ND449_01570 PF00575 S1 RNA binding domain ND449_01570 PF08461 Ribonuclease R winged-helix domain ND449_01570 PF17876 Cold shock domain ND449_01575 PF00588 SpoU rRNA Methylase family ND449_01575 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND449_01595 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND449_01600 PF13953 PapC C-terminal domain ND449_01600 PF13954 PapC N-terminal domain ND449_01600 PF00577 Outer membrane usher protein ND449_01620 PF00326 Prolyl oligopeptidase family ND449_01630 PF01250 Ribosomal protein S6 ND449_01635 PF00436 Single-strand binding protein family ND449_01640 PF01084 Ribosomal protein S18 ND449_01645 PF03948 Ribosomal protein L9, C-terminal domain ND449_01645 PF01281 Ribosomal protein L9, N-terminal domain ND449_01650 PF08525 Opacity-associated protein A N-terminal motif ND449_01650 PF04225 Opacity-associated protein A LysM-like domain ND449_01655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND449_01655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND449_01660 PF01814 Hemerythrin HHE cation binding domain ND449_01660 PF04405 Domain of Unknown function (DUF542) ND449_01665 PF02872 5'-nucleotidase, C-terminal domain ND449_01665 PF00149 Calcineurin-like phosphoesterase ND449_01670 PF00459 Inositol monophosphatase family ND449_01675 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ND449_01680 PF06526 Protein of unknown function (DUF1107) ND449_01685 PF01595 Cyclin M transmembrane N-terminal domain ND449_01685 PF00571 CBS domain ND449_01685 PF03471 Transporter associated domain ND449_01690 PF01625 Peptide methionine sulfoxide reductase ND449_01695 PF07244 Surface antigen variable number repeat ND449_01695 PF17243 POTRA domain TamA domain 1 ND449_01695 PF01103 Surface antigen ND449_01700 PF04357 TamB, inner membrane protein subunit of TAM complex ND449_01705 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ND449_01710 PF00719 Inorganic pyrophosphatase ND449_01715 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ND449_01720 PF02875 Mur ligase family, glutamate ligase domain ND449_01720 PF08245 Mur ligase middle domain ND449_01720 PF01225 Mur ligase family, catalytic domain ND449_01725 PF01316 Arginine repressor, DNA binding domain ND449_01725 PF02863 Arginine repressor, C-terminal domain ND449_01730 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ND449_01730 PF00056 lactate/malate dehydrogenase, NAD binding domain ND449_01735 PF13693 Winged helix-turn-helix DNA-binding ND449_01750 PF00348 Polyprenyl synthetase ND449_01755 PF00829 Ribosomal prokaryotic L21 protein ND449_01760 PF01016 Ribosomal L27 protein ND449_01765 PF00892 EamA-like transporter family ND449_01770 PF01018 GTP1/OBG ND449_01770 PF01926 50S ribosome-binding GTPase ND449_01775 PF00672 HAMP domain ND449_01775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_01775 PF00512 His Kinase A (phospho-acceptor) domain ND449_01780 PF00072 Response regulator receiver domain ND449_01780 PF00486 Transcriptional regulatory protein, C terminal ND449_01785 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ND449_01790 PF03449 Transcription elongation factor, N-terminal ND449_01790 PF01272 Transcription elongation factor, GreA/GreB, C-term ND449_01795 PF01985 CRS1 / YhbY (CRM) domain ND449_01800 PF01728 FtsJ-like methyltransferase ND449_01805 PF00004 ATPase family associated with various cellular activities (AAA) ND449_01805 PF17862 AAA+ lid domain ND449_01805 PF06480 FtsH Extracellular ND449_01805 PF01434 Peptidase family M41 ND449_01810 PF00809 Pterin binding enzyme ND449_01815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND449_01815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND449_01815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND449_01815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND449_01820 PF03840 Preprotein translocase SecG subunit ND449_01835 PF02576 RimP N-terminal domain ND449_01835 PF17384 RimP C-terminal SH3 domain ND449_01840 PF13184 NusA-like KH domain ND449_01840 PF00575 S1 RNA binding domain ND449_01840 PF08529 NusA N-terminal domain ND449_01845 PF00009 Elongation factor Tu GTP binding domain ND449_01845 PF03144 Elongation factor Tu domain 2 ND449_01845 PF11987 Translation-initiation factor 2 ND449_01845 PF08364 Bacterial translation initiation factor IF-2 associated region ND449_01845 PF04760 Translation initiation factor IF-2, N-terminal region ND449_01850 PF02033 Ribosome-binding factor A ND449_01855 PF16198 tRNA pseudouridylate synthase B C-terminal domain ND449_01855 PF09157 Pseudouridine synthase II TruB, C-terminal ND449_01855 PF01509 TruB family pseudouridylate synthase (N terminal domain) ND449_01860 PF00312 Ribosomal protein S15 ND449_01865 PF00013 KH domain ND449_01865 PF01138 3' exoribonuclease family, domain 1 ND449_01865 PF03725 3' exoribonuclease family, domain 2 ND449_01865 PF00575 S1 RNA binding domain ND449_01865 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ND449_01870 PF07719 Tetratricopeptide repeat ND449_01870 PF13181 Tetratricopeptide repeat ND449_01875 PF03880 DbpA RNA binding domain ND449_01875 PF00270 DEAD/DEAH box helicase ND449_01875 PF12343 Cold shock protein DEAD box A ND449_01875 PF00271 Helicase conserved C-terminal domain ND449_01880 PF00296 Luciferase-like monooxygenase ND449_01890 PF03313 Serine dehydratase alpha chain ND449_01895 PF01136 Peptidase family U32 ND449_01900 PF01136 Peptidase family U32 ND449_01905 PF02036 SCP-2 sterol transfer family ND449_01910 PF13508 Acetyltransferase (GNAT) domain ND449_01915 PF01541 GIY-YIG catalytic domain ND449_01920 PF13520 Amino acid permease ND449_01925 PF01276 Orn/Lys/Arg decarboxylase, major domain ND449_01925 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND449_01925 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND449_01930 PF10940 Protein of unknown function (DUF2618) ND449_01940 PF13460 NAD(P)H-binding ND449_01945 PF12706 Beta-lactamase superfamily domain ND449_01955 PF07969 Amidohydrolase family ND449_01960 PF00005 ABC transporter ND449_01965 PF00005 ABC transporter ND449_01970 PF06007 Phosphonate metabolism protein PhnJ ND449_01975 PF05861 Bacterial phosphonate metabolism protein (PhnI) ND449_01980 PF05845 Bacterial phosphonate metabolism protein (PhnH) ND449_01985 PF06754 Phosphonate metabolism protein PhnG ND449_01995 PF03477 ATP cone domain ND449_01995 PF13597 Anaerobic ribonucleoside-triphosphate reductase ND449_02000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND449_02000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND449_02005 PF06877 Regulator of ribonuclease activity B ND449_02010 PF00583 Acetyltransferase (GNAT) family ND449_02015 PF00133 tRNA synthetases class I (I, L, M and V) ND449_02015 PF10458 Valyl tRNA synthetase tRNA binding arm ND449_02015 PF08264 Anticodon-binding domain of tRNA ND449_02020 PF04364 DNA polymerase III chi subunit, HolC ND449_02025 PF00883 Cytosol aminopeptidase family, catalytic domain ND449_02025 PF02789 Cytosol aminopeptidase family, N-terminal domain ND449_02030 PF03739 Lipopolysaccharide export system permease LptF/LptG ND449_02035 PF03739 Lipopolysaccharide export system permease LptF/LptG ND449_02075 PF04221 RelB antitoxin ND449_02080 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ND449_02125 PF00892 EamA-like transporter family ND449_02170 PF01344 Kelch motif ND449_02175 PF06178 Oligogalacturonate-specific porin protein (KdgM) ND449_02180 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND449_02180 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND449_02180 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain ND449_02195 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND449_02195 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND449_02195 PF09093 Lyase, catalytic ND449_02195 PF09092 Lyase, N terminal ND449_02200 PF00884 Sulfatase ND449_02205 PF00455 DeoR C terminal sensor domain ND449_02205 PF08220 DeoR-like helix-turn-helix domain ND449_02210 PF08013 Tagatose 6 phosphate kinase ND449_02215 PF01380 SIS domain ND449_02220 PF03830 PTS system sorbose subfamily IIB component ND449_02225 PF03609 PTS system sorbose-specific iic component ND449_02230 PF03613 PTS system mannose/fructose/sorbose family IID component ND449_02240 PF01979 Amidohydrolase family ND449_02245 PF04962 KduI/IolB family ND449_02255 PF07470 Glycosyl Hydrolase Family 88 ND449_02260 PF04055 Radical SAM superfamily ND449_02260 PF13186 Iron-sulfur cluster-binding domain ND449_02265 PF00884 Sulfatase ND449_02275 PF01116 Fructose-bisphosphate aldolase class-II ND449_02285 PF10696 Protein of unknown function (DUF2501) ND449_02290 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND449_02305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND449_02310 PF00873 AcrB/AcrD/AcrF family ND449_02315 PF00465 Iron-containing alcohol dehydrogenase ND449_02320 PF02733 Dak1 domain ND449_02325 PF02734 DAK2 domain ND449_02330 PF00381 PTS HPr component phosphorylation site ND449_02330 PF03610 PTS system fructose IIA component ND449_02330 PF05524 PEP-utilising enzyme, N-terminal ND449_02330 PF00391 PEP-utilising enzyme, mobile domain ND449_02335 PF02954 Bacterial regulatory protein, Fis family ND449_02335 PF00989 PAS fold ND449_02335 PF00158 Sigma-54 interaction domain ND449_02340 PF00990 Diguanylate cyclase, GGDEF domain ND449_02345 PF07256 Protein of unknown function (DUF1435) ND449_02365 PF05175 Methyltransferase small domain ND449_02365 PF08468 Methyltransferase small domain N-terminal ND449_02370 PF03603 DNA polymerase III psi subunit ND449_02375 PF00583 Acetyltransferase (GNAT) family ND449_02380 PF00009 Elongation factor Tu GTP binding domain ND449_02380 PF03144 Elongation factor Tu domain 2 ND449_02380 PF16658 Class II release factor RF3, C-terminal domain ND449_02385 PF04972 BON domain ND449_02390 PF07043 Protein of unknown function (DUF1328) ND449_02395 PF01734 Patatin-like phospholipase ND449_02400 PF01026 TatD related DNase ND449_02405 PF07670 Nucleoside recognition ND449_02405 PF07662 Na+ dependent nucleoside transporter C-terminus ND449_02405 PF01773 Na+ dependent nucleoside transporter N-terminus ND449_02410 PF01791 DeoC/LacD family aldolase ND449_02415 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ND449_02415 PF00591 Glycosyl transferase family, a/b domain ND449_02415 PF02885 Glycosyl transferase family, helical bundle domain ND449_02420 PF01676 Metalloenzyme superfamily ND449_02425 PF01048 Phosphorylase superfamily ND449_02430 PF10144 Bacterial virulence factor haemolysin ND449_02435 PF18429 Domain of unknown function (DUF5609) ND449_02440 PF18073 Rubredoxin metal binding domain ND449_02445 PF13521 AAA domain ND449_02445 PF01381 Helix-turn-helix ND449_02450 PF12848 ABC transporter ND449_02450 PF00005 ABC transporter ND449_02465 PF00690 Cation transporter/ATPase, N-terminus ND449_02465 PF00689 Cation transporting ATPase, C-terminus ND449_02475 PF14718 Soluble lytic murein transglycosylase L domain ND449_02475 PF01464 Transglycosylase SLT domain ND449_02480 PF01371 Trp repressor protein ND449_02485 PF01931 Protein of unknown function DUF84 ND449_02490 PF00300 Histidine phosphatase superfamily (branch 1) ND449_02495 PF06445 GyrI-like small molecule binding domain ND449_02495 PF12833 Helix-turn-helix domain ND449_02500 PF05981 CreA protein ND449_02505 PF00486 Transcriptional regulatory protein, C terminal ND449_02505 PF00072 Response regulator receiver domain ND449_02515 PF08254 Threonine leader peptide ND449_02520 PF00742 Homoserine dehydrogenase ND449_02520 PF13840 ACT domain ND449_02520 PF01842 ACT domain ND449_02520 PF00696 Amino acid kinase family ND449_02520 PF03447 Homoserine dehydrogenase, NAD binding domain ND449_02525 PF00288 GHMP kinases N terminal domain ND449_02525 PF08544 GHMP kinases C terminal ND449_02530 PF00291 Pyridoxal-phosphate dependent enzyme ND449_02530 PF14821 Threonine synthase N terminus ND449_02535 PF03883 Peroxide stress protein YaaA ND449_02540 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND449_02545 PF00994 Probable molybdopterin binding domain ND449_02550 PF07690 Major Facilitator Superfamily ND449_02560 PF01184 GPR1/FUN34/yaaH family ND449_02565 PF00012 Hsp70 protein ND449_02570 PF01556 DnaJ C terminal domain ND449_02570 PF00226 DnaJ domain ND449_02570 PF00684 DnaJ central domain ND449_02575 PF06965 Na+/H+ antiporter 1 ND449_02580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_02580 PF03466 LysR substrate binding domain ND449_02585 PF01649 Ribosomal protein S20 ND449_02590 PF01687 Riboflavin kinase ND449_02590 PF06574 FAD synthetase ND449_02595 PF06827 Zinc finger found in FPG and IleRS ND449_02595 PF00133 tRNA synthetases class I (I, L, M and V) ND449_02595 PF08264 Anticodon-binding domain of tRNA ND449_02600 PF01252 Signal peptidase (SPase) II ND449_02605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND449_02610 PF02401 LytB protein ND449_02615 PF01113 Dihydrodipicolinate reductase, N-terminus ND449_02615 PF05173 Dihydrodipicolinate reductase, C-terminus ND449_02620 PF00117 Glutamine amidotransferase class-I ND449_02620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ND449_02625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND449_02625 PF02142 MGS-like domain ND449_02625 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ND449_02630 PF01810 LysE type translocator ND449_02635 PF06738 Putative threonine/serine exporter ND449_02640 PF12821 Threonine/Serine exporter, ThrE ND449_02645 PF00186 Dihydrofolate reductase ND449_02655 PF00149 Calcineurin-like phosphoesterase ND449_02660 PF04379 ApaG domain ND449_02665 PF00398 Ribosomal RNA adenine dimethylase ND449_02670 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ND449_02675 PF09312 SurA N-terminal domain ND449_02675 PF00639 PPIC-type PPIASE domain ND449_02680 PF04453 LPS transport system D ND449_02680 PF03968 OstA-like protein ND449_02685 PF00226 DnaJ domain ND449_02685 PF05099 Tellurite resistance protein TerB ND449_02690 PF00849 RNA pseudouridylate synthase ND449_02695 PF00176 SNF2 family N-terminal domain ND449_02695 PF18339 RapA N-terminal Tudor like domain 1 ND449_02695 PF18337 RapA N-terminal Tudor like domain ND449_02695 PF00271 Helicase conserved C-terminal domain ND449_02695 PF12137 RNA polymerase recycling family C-terminal ND449_02700 PF00136 DNA polymerase family B ND449_02700 PF03104 DNA polymerase family B, exonuclease domain ND449_02705 PF09335 SNARE associated Golgi protein ND449_02710 PF00005 ABC transporter ND449_02715 PF00528 Binding-protein-dependent transport system inner membrane component ND449_02725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND449_02725 PF12793 Sugar transport-related sRNA regulator N-term ND449_02735 PF07690 Major Facilitator Superfamily ND449_02740 PF00694 Aconitase C-terminal domain ND449_02745 PF00330 Aconitase family (aconitate hydratase) ND449_02750 PF00180 Isocitrate/isopropylmalate dehydrogenase ND449_02755 PF00682 HMGL-like ND449_02755 PF08502 LeuA allosteric (dimerisation) domain ND449_02760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_02760 PF03466 LysR substrate binding domain ND449_02765 PF00501 AMP-binding enzyme ND449_02770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND449_02770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND449_02770 PF00205 Thiamine pyrophosphate enzyme, central domain ND449_02775 PF10369 Small subunit of acetolactate synthase ND449_02780 PF00356 Bacterial regulatory proteins, lacI family ND449_02780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND449_02785 PF06610 L-alanine exporter ND449_02790 PF02381 MraZ protein, putative antitoxin-like ND449_02795 PF01795 MraW methylase family ND449_02800 PF04999 Cell division protein FtsL ND449_02805 PF03717 Penicillin-binding Protein dimerisation domain ND449_02805 PF00905 Penicillin binding protein transpeptidase domain ND449_02810 PF01225 Mur ligase family, catalytic domain ND449_02810 PF02875 Mur ligase family, glutamate ligase domain ND449_02810 PF08245 Mur ligase middle domain ND449_02815 PF01225 Mur ligase family, catalytic domain ND449_02815 PF02875 Mur ligase family, glutamate ligase domain ND449_02815 PF08245 Mur ligase middle domain ND449_02820 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ND449_02820 PF00953 Glycosyl transferase family 4 ND449_02825 PF08245 Mur ligase middle domain ND449_02825 PF02875 Mur ligase family, glutamate ligase domain ND449_02830 PF01098 Cell cycle protein ND449_02835 PF04101 Glycosyltransferase family 28 C-terminal domain ND449_02835 PF03033 Glycosyltransferase family 28 N-terminal domain ND449_02840 PF01225 Mur ligase family, catalytic domain ND449_02840 PF02875 Mur ligase family, glutamate ligase domain ND449_02840 PF08245 Mur ligase middle domain ND449_02845 PF07478 D-ala D-ala ligase C-terminus ND449_02845 PF01820 D-ala D-ala ligase N-terminus ND449_02850 PF08478 POTRA domain, FtsQ-type ND449_02850 PF03799 Cell division protein FtsQ ND449_02855 PF02491 SHS2 domain inserted in FTSA ND449_02860 PF12327 FtsZ family, C-terminal domain ND449_02860 PF00091 Tubulin/FtsZ family, GTPase domain ND449_02865 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ND449_02875 PF06558 Secretion monitor precursor protein (SecM) ND449_02880 PF07517 SecA DEAD-like domain ND449_02880 PF02810 SEC-C motif ND449_02880 PF01043 SecA preprotein cross-linking domain ND449_02880 PF07516 SecA Wing and Scaffold domain ND449_02885 PF00293 NUDIX domain ND449_02890 PF03884 DNA gyrase inhibitor YacG ND449_02895 PF07072 Cell division protein ND449_02900 PF01121 Dephospho-CoA kinase ND449_02905 PF00478 IMP dehydrogenase / GMP reductase domain ND449_02910 PF00482 Type II secretion system (T2SS), protein F ND449_02915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ND449_02915 PF00437 Type II/IV secretion system protein ND449_02920 PF07963 Prokaryotic N-terminal methylation motif ND449_02925 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ND449_02925 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ND449_02930 PF01510 N-acetylmuramoyl-L-alanine amidase ND449_02935 PF17113 Regulatory signalling modulator protein AmpE ND449_02940 PF00324 Amino acid permease ND449_02945 PF07729 FCD domain ND449_02945 PF00392 Bacterial regulatory proteins, gntR family ND449_02950 PF00456 Transketolase, thiamine diphosphate binding domain ND449_02950 PF17831 Pyruvate dehydrogenase E1 component middle domain ND449_02955 PF00364 Biotin-requiring enzyme ND449_02955 PF02817 e3 binding domain ND449_02955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND449_02960 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND449_02960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND449_02970 PF00330 Aconitase family (aconitate hydratase) ND449_02970 PF06434 Aconitate hydratase 2 N-terminus ND449_02970 PF11791 Aconitate B N-terminal domain ND449_02975 PF06062 Uncharacterised protein family (UPF0231) ND449_02980 PF00892 EamA-like transporter family ND449_02985 PF02675 S-adenosylmethionine decarboxylase ND449_02990 PF17284 Spermidine synthase tetramerisation domain ND449_02995 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND449_03000 PF00394 Multicopper oxidase ND449_03000 PF07731 Multicopper oxidase ND449_03000 PF07732 Multicopper oxidase ND449_03000 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND449_03005 PF00156 Phosphoribosyl transferase domain ND449_03010 PF00484 Carbonic anhydrase ND449_03015 PF00005 ABC transporter ND449_03020 PF01061 ABC-2 type transporter ND449_03025 PF01522 Polysaccharide deacetylase ND449_03030 PF02261 Aspartate decarboxylase ND449_03035 PF02569 Pantoate-beta-alanine ligase ND449_03040 PF02548 Ketopantoate hydroxymethyltransferase ND449_03045 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ND449_03050 PF01743 Poly A polymerase head domain ND449_03050 PF12626 Polymerase A arginine-rich C-terminus ND449_03050 PF12627 Probable RNA and SrmB- binding site of polymerase A ND449_03055 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND449_03060 PF01258 Prokaryotic dksA/traR C4-type zinc finger ND449_03065 PF03749 Sugar fermentation stimulation protein RE domain ND449_03065 PF17746 SfsA N-terminal OB domain ND449_03070 PF02834 LigT like Phosphoesterase ND449_03075 PF00271 Helicase conserved C-terminal domain ND449_03075 PF08482 ATP-dependent helicase C-terminal ND449_03075 PF00270 DEAD/DEAH box helicase ND449_03075 PF04408 Helicase associated domain (HA2) ND449_03080 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ND449_03080 PF00912 Transglycosylase ND449_03080 PF00905 Penicillin binding protein transpeptidase domain ND449_03080 PF14814 Bifunctional transglycosylase second domain ND449_03085 PF00202 Aminotransferase class-III ND449_03090 PF00654 Voltage gated chloride channel ND449_03095 PF01521 Iron-sulphur cluster biosynthesis ND449_03100 PF03458 UPF0126 domain ND449_03105 PF01497 Periplasmic binding protein ND449_03110 PF01048 Phosphorylase superfamily ND449_03115 PF13286 Phosphohydrolase-associated domain ND449_03115 PF01966 HD domain ND449_03120 PF00595 PDZ domain ND449_03125 PF00672 HAMP domain ND449_03125 PF00512 His Kinase A (phospho-acceptor) domain ND449_03125 PF01627 Hpt domain ND449_03125 PF00072 Response regulator receiver domain ND449_03125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND449_03125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_03130 PF05958 tRNA (Uracil-5-)-methyltransferase ND449_03130 PF01938 TRAM domain ND449_03135 PF02824 TGS domain ND449_03135 PF13291 ACT domain ND449_03135 PF04607 Region found in RelA / SpoT proteins ND449_03140 PF03819 MazG nucleotide pyrophosphohydrolase domain ND449_03145 PF00117 Glutamine amidotransferase class-I ND449_03145 PF06418 CTP synthase N-terminus ND449_03150 PF00113 Enolase, C-terminal TIM barrel domain ND449_03150 PF03952 Enolase, N-terminal domain ND449_03155 PF04055 Radical SAM superfamily ND449_03160 PF01242 6-pyruvoyl tetrahydropterin synthase ND449_03165 PF00175 Oxidoreductase NAD-binding domain ND449_03165 PF00667 FAD binding domain ND449_03165 PF00258 Flavodoxin ND449_03170 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND449_03170 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND449_03175 PF01507 Phosphoadenosine phosphosulfate reductase family ND449_03190 PF04389 Peptidase family M28 ND449_03195 PF10414 Sirohaem synthase dimerisation region ND449_03195 PF14824 Sirohaem biosynthesis protein central ND449_03195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND449_03200 PF01507 Phosphoadenosine phosphosulfate reductase family ND449_03205 PF00009 Elongation factor Tu GTP binding domain ND449_03215 PF12084 Protein of unknown function (DUF3561) ND449_03220 PF04977 Septum formation initiator ND449_03225 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ND449_03230 PF02542 YgbB family ND449_03235 PF01142 tRNA pseudouridine synthase D (TruD) ND449_03240 PF01975 Survival protein SurE ND449_03250 PF01476 LysM domain ND449_03250 PF01551 Peptidase family M23 ND449_03255 PF00140 Sigma-70 factor, region 1.2 ND449_03255 PF04542 Sigma-70 region 2 ND449_03255 PF04539 Sigma-70 region 3 ND449_03255 PF04545 Sigma-70, region 4 ND449_03260 PF00488 MutS domain V ND449_03260 PF05190 MutS family domain IV ND449_03260 PF01624 MutS domain I ND449_03260 PF05192 MutS domain III ND449_03260 PF05188 MutS domain II ND449_03295 PF00501 AMP-binding enzyme ND449_03295 PF13193 AMP-binding enzyme C-terminal domain ND449_03295 PF00668 Condensation domain ND449_03295 PF00550 Phosphopantetheine attachment site ND449_03330 PF00512 His Kinase A (phospho-acceptor) domain ND449_03330 PF09308 LuxQ, periplasmic ND449_03330 PF00072 Response regulator receiver domain ND449_03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_03335 PF00072 Response regulator receiver domain ND449_03335 PF00196 Bacterial regulatory proteins, luxR family ND449_03350 PF01464 Transglycosylase SLT domain ND449_03370 PF01514 Secretory protein of YscJ/FliF family ND449_03390 PF12833 Helix-turn-helix domain ND449_03395 PF00263 Bacterial type II and III secretion system protein ND449_03395 PF03958 Bacterial type II/III secretion system short domain ND449_03400 PF07201 HrpJ-like domain ND449_03405 PF00771 FHIPEP family ND449_03415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND449_03415 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND449_03415 PF18269 T3SS EscN ATPase C-terminal domain ND449_03430 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND449_03435 PF00813 FliP family ND449_03440 PF01313 Bacterial export proteins, family 3 ND449_03445 PF01311 Bacterial export proteins, family 1 ND449_03450 PF01312 FlhB HrpN YscU SpaS Family ND449_03455 PF07720 Tetratricopeptide repeat ND449_03480 PF00550 Phosphopantetheine attachment site ND449_03500 PF18416 N-acetylglucosamine binding protein domain 2 ND449_03500 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND449_03505 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND449_03510 PF06750 Bacterial Peptidase A24 N-terminal domain ND449_03510 PF01478 Type IV leader peptidase family ND449_03520 PF12693 GspL periplasmic domain ND449_03520 PF05134 Type II secretion system (T2SS), protein L ND449_03525 PF03934 Type II secretion system (T2SS), protein K ND449_03530 PF07963 Prokaryotic N-terminal methylation motif ND449_03530 PF11612 Type II secretion system (T2SS), protein J ND449_03535 PF07963 Prokaryotic N-terminal methylation motif ND449_03535 PF02501 Type II secretion system (T2SS), protein I ND449_03545 PF08334 Type II secretion system (T2SS), protein G ND449_03545 PF07963 Prokaryotic N-terminal methylation motif ND449_03550 PF00482 Type II secretion system (T2SS), protein F ND449_03555 PF00437 Type II/IV secretion system protein ND449_03560 PF00263 Bacterial type II and III secretion system protein ND449_03560 PF03958 Bacterial type II/III secretion system short domain ND449_03565 PF11356 Type II secretion system protein C ND449_03590 PF05681 Fumarate hydratase (Fumerase) ND449_03590 PF05683 Fumarase C-terminus ND449_03595 PF07690 Major Facilitator Superfamily ND449_03600 PF02464 Competence-damaged protein ND449_03605 PF00154 recA bacterial DNA recombination protein ND449_03610 PF02631 RecX family ND449_03615 PF02272 DHHA1 domain ND449_03615 PF01411 tRNA synthetases class II (A) ND449_03615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND449_03620 PF02599 Global regulator protein family ND449_03650 PF01411 tRNA synthetases class II (A) ND449_03650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND449_03655 PF01411 tRNA synthetases class II (A) ND449_03655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND449_03660 PF13419 Haloacid dehalogenase-like hydrolase ND449_03665 PF09335 SNARE associated Golgi protein ND449_03670 PF04262 Glutamate-cysteine ligase ND449_03675 PF02664 S-Ribosylhomocysteinase (LuxS) ND449_03680 PF00571 CBS domain ND449_03680 PF03471 Transporter associated domain ND449_03680 PF01595 Cyclin M transmembrane N-terminal domain ND449_03685 PF01578 Cytochrome C assembly protein ND449_03690 PF00448 SRP54-type protein, GTPase domain ND449_03690 PF02881 SRP54-type protein, helical bundle domain ND449_03690 PF02978 Signal peptide binding domain ND449_03695 PF00886 Ribosomal protein S16 ND449_03700 PF01782 RimM N-terminal domain ND449_03700 PF05239 PRC-barrel domain ND449_03705 PF01746 tRNA (Guanine-1)-methyltransferase ND449_03710 PF01245 Ribosomal protein L19 ND449_03715 PF04338 Protein of unknown function, DUF481 ND449_03720 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND449_03725 PF00072 Response regulator receiver domain ND449_03725 PF04397 LytTr DNA-binding domain ND449_03730 PF00793 DAHP synthetase I family ND449_03735 PF01817 Chorismate mutase type II ND449_03735 PF02153 Prephenate dehydrogenase ND449_03740 PF01817 Chorismate mutase type II ND449_03740 PF00800 Prephenate dehydratase ND449_03750 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND449_03755 PF13525 Outer membrane lipoprotein ND449_03760 PF01479 S4 domain ND449_03760 PF00849 RNA pseudouridylate synthase ND449_03765 PF02578 Multi-copper polyphenol oxidoreductase laccase ND449_03770 PF07724 AAA domain (Cdc48 subfamily) ND449_03770 PF17871 AAA lid domain ND449_03770 PF02861 Clp amino terminal domain, pathogenicity island component ND449_03770 PF10431 C-terminal, D2-small domain, of ClpB protein ND449_03770 PF00004 ATPase family associated with various cellular activities (AAA) ND449_03805 PF03372 Endonuclease/Exonuclease/phosphatase family ND449_03810 PF01476 LysM domain ND449_03810 PF01464 Transglycosylase SLT domain ND449_03815 PF00753 Metallo-beta-lactamase superfamily ND449_03815 PF16123 Hydroxyacylglutathione hydrolase C-terminus ND449_03820 PF08241 Methyltransferase domain ND449_03825 PF00075 RNase H ND449_03830 PF00929 Exonuclease ND449_03840 PF09317 Domain of unknown function (DUF1974) ND449_03840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND449_03840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND449_03845 PF13580 SIS domain ND449_03850 PF13230 Glutamine amidotransferases class-II ND449_03855 PF03734 L,D-transpeptidase catalytic domain ND449_03860 PF11973 NQRA C-terminal domain ND449_03860 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ND449_03865 PF03116 NQR2, RnfD, RnfE family ND449_03870 PF04205 FMN-binding domain ND449_03875 PF02508 Rnf-Nqr subunit, membrane protein ND449_03880 PF02508 Rnf-Nqr subunit, membrane protein ND449_03885 PF00970 Oxidoreductase FAD-binding domain ND449_03885 PF00111 2Fe-2S iron-sulfur cluster binding domain ND449_03885 PF00175 Oxidoreductase NAD-binding domain ND449_03890 PF02424 ApbE family ND449_03895 PF04400 (Na+)-NQR maturation NqrM ND449_03900 PF03009 Glycerophosphoryl diester phosphodiesterase family ND449_03905 PF11799 impB/mucB/samB family C-terminal domain ND449_03905 PF11798 IMS family HHH motif ND449_03905 PF00817 impB/mucB/samB family ND449_03910 PF07687 Peptidase dimerisation domain ND449_03910 PF01546 Peptidase family M20/M25/M40 ND449_03915 PF00156 Phosphoribosyl transferase domain ND449_03920 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ND449_03925 PF07417 Sigma factor-binding transcriptional regulator Crl ND449_03930 PF00696 Amino acid kinase family ND449_03930 PF01472 PUA domain ND449_03935 PF00171 Aldehyde dehydrogenase family ND449_03940 PF07238 PilZ domain ND449_03940 PF07317 Flagellar regulator YcgR ND449_03965 PF07715 TonB-dependent Receptor Plug Domain ND449_03965 PF00593 TonB dependent receptor ND449_03970 PF01202 Shikimate kinase ND449_03990 PF07302 AroM protein ND449_03995 PF06865 Pyrimidine/purine nucleoside phosphorylase ND449_04000 PF04381 Putative exonuclease, RdgC ND449_04005 PF00480 ROK family ND449_04010 PF13476 AAA domain ND449_04015 PF00149 Calcineurin-like phosphoesterase ND449_04015 PF12320 Type 5 capsule protein repressor C-terminal domain ND449_04020 PF00072 Response regulator receiver domain ND449_04020 PF00486 Transcriptional regulatory protein, C terminal ND449_04025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_04025 PF00512 His Kinase A (phospho-acceptor) domain ND449_04025 PF00989 PAS fold ND449_04025 PF11808 Phosphate regulon sensor protein PhoR ND449_04030 PF12849 PBP superfamily domain ND449_04035 PF05525 Branched-chain amino acid transport protein ND449_04040 PF00324 Amino acid permease ND449_04045 PF00128 Alpha amylase, catalytic domain ND449_04045 PF02903 Alpha amylase, N-terminal ig-like domain ND449_04055 PF10417 C-terminal domain of 1-Cys peroxiredoxin ND449_04055 PF00578 AhpC/TSA family ND449_04060 PF04336 Acyl carrier protein phosphodiesterase ND449_04065 PF02547 Queuosine biosynthesis protein ND449_04070 PF01702 Queuine tRNA-ribosyltransferase ND449_04075 PF02699 Preprotein translocase subunit ND449_04080 PF07549 SecD/SecF GG Motif ND449_04080 PF13721 SecD export protein N-terminal TM region ND449_04080 PF02355 Protein export membrane protein ND449_04085 PF02355 Protein export membrane protein ND449_04085 PF07549 SecD/SecF GG Motif ND449_04090 PF03477 ATP cone domain ND449_04095 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND449_04095 PF01872 RibD C-terminal domain ND449_04100 PF00885 6,7-dimethyl-8-ribityllumazine synthase ND449_04105 PF01029 NusB family ND449_04110 PF00586 AIR synthase related protein, N-terminal domain ND449_04110 PF02769 AIR synthase related protein, C-terminal domain ND449_04115 PF04608 Phosphatidylglycerophosphatase A ND449_04120 PF02779 Transketolase, pyrimidine binding domain ND449_04120 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ND449_04120 PF02780 Transketolase, C-terminal domain ND449_04125 PF00348 Polyprenyl synthetase ND449_04130 PF02609 Exonuclease VII small subunit ND449_04135 PF02568 Thiamine biosynthesis protein (ThiI) ND449_04135 PF02926 THUMP domain ND449_04140 PF02954 Bacterial regulatory protein, Fis family ND449_04140 PF00072 Response regulator receiver domain ND449_04140 PF14532 Sigma-54 interaction domain ND449_04145 PF00672 HAMP domain ND449_04145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_04145 PF00512 His Kinase A (phospho-acceptor) domain ND449_04155 PF07690 Major Facilitator Superfamily ND449_04160 PF01965 DJ-1/PfpI family ND449_04165 PF08546 Ketopantoate reductase PanE/ApbA C terminal ND449_04165 PF02558 Ketopantoate reductase PanE/ApbA ND449_04170 PF04461 Protein of unknown function (DUF520) ND449_04175 PF07690 Major Facilitator Superfamily ND449_04180 PF01040 UbiA prenyltransferase family ND449_04185 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ND449_04190 PF00510 Cytochrome c oxidase subunit III ND449_04195 PF00115 Cytochrome C and Quinol oxidase polypeptide I ND449_04200 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ND449_04200 PF06481 COX Aromatic Rich Motif ND449_04205 PF03502 Nucleoside-specific channel-forming protein, Tsx ND449_04210 PF07690 Major Facilitator Superfamily ND449_04215 PF03923 Uncharacterized lipoprotein ND449_04215 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND449_04220 PF01722 BolA-like protein ND449_04225 PF05698 Bacterial trigger factor protein (TF) C-terminus ND449_04225 PF05697 Bacterial trigger factor protein (TF) ND449_04225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND449_04230 PF00574 Clp protease ND449_04235 PF07724 AAA domain (Cdc48 subfamily) ND449_04235 PF06689 ClpX C4-type zinc finger ND449_04235 PF10431 C-terminal, D2-small domain, of ClpB protein ND449_04240 PF00004 ATPase family associated with various cellular activities (AAA) ND449_04240 PF05362 Lon protease (S16) C-terminal proteolytic domain ND449_04240 PF02190 ATP-dependent protease La (LON) substrate-binding domain ND449_04245 PF00216 Bacterial DNA-binding protein ND449_04250 PF13145 PPIC-type PPIASE domain ND449_04265 PF06508 Queuosine biosynthesis protein QueC ND449_04270 PF12793 Sugar transport-related sRNA regulator N-term ND449_04270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND449_04285 PF01037 Lrp/AsnC ligand binding domain ND449_04285 PF13404 AsnC-type helix-turn-helix domain ND449_04290 PF00005 ABC transporter ND449_04290 PF00664 ABC transporter transmembrane region ND449_04295 PF00005 ABC transporter ND449_04295 PF00664 ABC transporter transmembrane region ND449_04300 PF00543 Nitrogen regulatory protein P-II ND449_04305 PF00909 Ammonium Transporter Family ND449_04315 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND449_04325 PF05321 Haemolysin expression modulating protein ND449_04330 PF10757 Biofilm formation regulator YbaJ ND449_04340 PF00444 Ribosomal protein L36 ND449_04345 PF01197 Ribosomal protein L31 ND449_04350 PF00873 AcrB/AcrD/AcrF family ND449_04355 PF00529 HlyD membrane-fusion protein of T1SS ND449_04355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND449_04360 PF08361 MAATS-type transcriptional repressor, C-terminal region ND449_04360 PF00440 Bacterial regulatory proteins, tetR family ND449_04365 PF02635 DsrE/DsrF-like family ND449_04370 PF00924 Mechanosensitive ion channel ND449_04370 PF12795 Mechanosensitive ion channel porin domain ND449_04370 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND449_04375 PF10689 Protein of unknown function (DUF2496) ND449_04385 PF04304 Protein of unknown function (DUF454) ND449_04390 PF00156 Phosphoribosyl transferase domain ND449_04395 PF01970 Tripartite tricarboxylate transporter TctA family ND449_04410 PF00072 Response regulator receiver domain ND449_04410 PF00486 Transcriptional regulatory protein, C terminal ND449_04415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_04415 PF00512 His Kinase A (phospho-acceptor) domain ND449_04420 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ND449_04420 PF12170 DNA polymerase III tau subunit V interacting with alpha ND449_04420 PF12169 DNA polymerase III subunits gamma and tau domain III ND449_04425 PF02575 YbaB/EbfC DNA-binding family ND449_04430 PF13662 Toprim domain ND449_04430 PF02132 RecR protein ND449_04435 PF00183 Hsp90 protein ND449_04435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_04440 PF05191 Adenylate kinase, active site lid ND449_04445 PF00762 Ferrochelatase ND449_04450 PF02706 Chain length determinant protein ND449_04455 PF00294 pfkB family carbohydrate kinase ND449_04460 PF02254 TrkA-N domain ND449_04460 PF00999 Sodium/hydrogen exchanger family ND449_04465 PF00149 Calcineurin-like phosphoesterase ND449_04465 PF02872 5'-nucleotidase, C-terminal domain ND449_04470 PF04073 Aminoacyl-tRNA editing domain ND449_04475 PF01963 TraB family ND449_04480 PF00403 Heavy-metal-associated domain ND449_04485 PF13411 MerR HTH family regulatory protein ND449_04490 PF01957 NfeD-like C-terminal, partner-binding ND449_04495 PF16200 C-terminal region of band_7 ND449_04495 PF01145 SPFH domain / Band 7 family ND449_04500 PF00085 Thioredoxin ND449_04505 PF00106 short chain dehydrogenase ND449_04510 PF13472 GDSL-like Lipase/Acylhydrolase family ND449_04515 PF00005 ABC transporter ND449_04525 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ND449_04525 PF02222 ATP-grasp domain ND449_04530 PF00731 AIR carboxylase ND449_04535 PF00149 Calcineurin-like phosphoesterase ND449_04540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND449_04545 PF01406 tRNA synthetases class I (C) catalytic domain ND449_04545 PF09190 DALR domain ND449_04560 PF00419 Fimbrial protein ND449_04565 PF00577 Outer membrane usher protein ND449_04565 PF13953 PapC C-terminal domain ND449_04565 PF13954 PapC N-terminal domain ND449_04570 PF02753 Pili assembly chaperone PapD, C-terminal domain ND449_04570 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND449_04605 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ND449_04605 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ND449_04615 PF01022 Bacterial regulatory protein, arsR family ND449_04620 PF02040 Arsenical pump membrane protein ND449_04625 PF03960 ArsC family ND449_04635 PF00501 AMP-binding enzyme ND449_04660 PF01292 Prokaryotic cytochrome b561 ND449_04670 PF00343 Carbohydrate phosphorylase ND449_04680 PF00072 Response regulator receiver domain ND449_04680 PF00486 Transcriptional regulatory protein, C terminal ND449_04690 PF00483 Nucleotidyl transferase ND449_04700 PF07238 PilZ domain ND449_04700 PF00535 Glycosyl transferase family 2 ND449_04700 PF03552 Cellulose synthase ND449_04720 PF16355 Domain of unknown function (DUF4982) ND449_04720 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND449_04720 PF00703 Glycosyl hydrolases family 2 ND449_04720 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND449_04725 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND449_04725 PF00672 HAMP domain ND449_04725 PF00512 His Kinase A (phospho-acceptor) domain ND449_04725 PF01627 Hpt domain ND449_04725 PF00072 Response regulator receiver domain ND449_04725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_04730 PF00990 Diguanylate cyclase, GGDEF domain ND449_04730 PF00072 Response regulator receiver domain ND449_04735 PF00440 Bacterial regulatory proteins, tetR family ND449_04765 PF00196 Bacterial regulatory proteins, luxR family ND449_04770 PF00313 'Cold-shock' DNA-binding domain ND449_04775 PF00313 'Cold-shock' DNA-binding domain ND449_04780 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ND449_04790 PF00990 Diguanylate cyclase, GGDEF domain ND449_04790 PF05230 MASE2 domain ND449_04795 PF02416 mttA/Hcf106 family ND449_04800 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ND449_04800 PF04055 Radical SAM superfamily ND449_04805 PF03099 Biotin/lipoate A/B protein ligase family ND449_04810 PF04359 Protein of unknown function (DUF493) ND449_04815 PF07943 Penicillin-binding protein 5, C-terminal domain ND449_04815 PF00768 D-alanyl-D-alanine carboxypeptidase ND449_04820 PF03330 Lytic transglycolase ND449_04820 PF05036 Sporulation related domain ND449_04825 PF01098 Cell cycle protein ND449_04830 PF03717 Penicillin-binding Protein dimerisation domain ND449_04830 PF00905 Penicillin binding protein transpeptidase domain ND449_04835 PF02590 Predicted SPOUT methyltransferase ND449_04845 PF01467 Cytidylyltransferase-like ND449_04850 PF06144 DNA polymerase III, delta subunit ND449_04850 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ND449_04855 PF04390 Lipopolysaccharide-assembly ND449_04860 PF08264 Anticodon-binding domain of tRNA ND449_04860 PF00133 tRNA synthetases class I (I, L, M and V) ND449_04860 PF13603 Leucyl-tRNA synthetase, Domain 2 ND449_04865 PF07295 Zinc-ribbon containing domain ND449_04870 PF00005 ABC transporter ND449_04875 PF00528 Binding-protein-dependent transport system inner membrane component ND449_04880 PF00528 Binding-protein-dependent transport system inner membrane component ND449_04885 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND449_04890 PF00795 Carbon-nitrogen hydrolase ND449_04895 PF03471 Transporter associated domain ND449_04895 PF00571 CBS domain ND449_04900 PF02130 Uncharacterized protein family UPF0054 ND449_04905 PF02562 PhoH-like protein ND449_04910 PF01938 TRAM domain ND449_04910 PF00919 Uncharacterized protein family UPF0004 ND449_04910 PF04055 Radical SAM superfamily ND449_04915 PF01494 FAD binding domain ND449_04950 PF00733 Asparagine synthase ND449_04950 PF13537 Glutamine amidotransferase domain ND449_04955 PF13344 Haloacid dehalogenase-like hydrolase ND449_04960 PF01047 MarR family ND449_04960 PF00480 ROK family ND449_04965 PF01979 Amidohydrolase family ND449_04970 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ND449_04975 PF00367 phosphotransferase system, EIIB ND449_04975 PF02378 Phosphotransferase system, EIIC ND449_04975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND449_04980 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND449_04980 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ND449_04985 PF03573 outer membrane porin, OprD family ND449_04990 PF13982 YbfN-like lipoprotein ND449_04995 PF03173 Putative carbohydrate binding domain ND449_04995 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ND449_04995 PF00728 Glycosyl hydrolase family 20, catalytic domain ND449_04995 PF02838 Glycosyl hydrolase family 20, domain 2 ND449_05000 PF01475 Ferric uptake regulator family ND449_05005 PF00258 Flavodoxin ND449_05010 PF00672 HAMP domain ND449_05010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND449_05010 PF02203 Tar ligand binding domain homologue ND449_05015 PF01402 Ribbon-helix-helix protein, copG family ND449_05020 PF12697 Alpha/beta hydrolase family ND449_05025 PF03925 SeqA protein C-terminal domain ND449_05025 PF17206 SeqA protein N-terminal domain ND449_05030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND449_05030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND449_05030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND449_05030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND449_05040 PF00072 Response regulator receiver domain ND449_05040 PF00486 Transcriptional regulatory protein, C terminal ND449_05045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_05045 PF13492 GAF domain ND449_05045 PF13493 Domain of unknown function (DUF4118) ND449_05045 PF00512 His Kinase A (phospho-acceptor) domain ND449_05045 PF02702 Osmosensitive K+ channel His kinase sensor domain ND449_05050 PF02669 K+-transporting ATPase, c chain ND449_05060 PF03814 Potassium-transporting ATPase A subunit ND449_05065 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) ND449_05070 PF10725 Protein of unknown function (DUF2517) ND449_05075 PF08349 Protein of unknown function (DUF1722) ND449_05080 PF00875 DNA photolyase ND449_05080 PF03441 FAD binding domain of DNA photolyase ND449_05085 PF02112 cAMP phosphodiesterases class-II ND449_05090 PF01784 NIF3 (NGG1p interacting factor 3) ND449_05095 PF02682 Carboxyltransferase domain, subdomain C and D ND449_05100 PF02626 Carboxyltransferase domain, subdomain A and B ND449_05105 PF03746 LamB/YcsF family ND449_05120 PF01470 Pyroglutamyl peptidase ND449_05130 PF00285 Citrate synthase, C-terminal domain ND449_05135 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND449_05140 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND449_05145 PF02910 Fumarate reductase flavoprotein C-term ND449_05145 PF00890 FAD binding domain ND449_05150 PF13085 2Fe-2S iron-sulfur cluster binding domain ND449_05155 PF00676 Dehydrogenase E1 component ND449_05155 PF16870 2-oxoglutarate dehydrogenase C-terminal ND449_05155 PF02779 Transketolase, pyrimidine binding domain ND449_05155 PF16078 2-oxoglutarate dehydrogenase N-terminus ND449_05160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND449_05160 PF02817 e3 binding domain ND449_05160 PF00364 Biotin-requiring enzyme ND449_05165 PF08442 ATP-grasp domain ND449_05165 PF00549 CoA-ligase ND449_05170 PF02629 CoA binding domain ND449_05170 PF00549 CoA-ligase ND449_05175 PF02872 5'-nucleotidase, C-terminal domain ND449_05175 PF00149 Calcineurin-like phosphoesterase ND449_05180 PF01654 Cytochrome bd terminal oxidase subunit I ND449_05185 PF02322 Cytochrome bd terminal oxidase subunit II ND449_05190 PF08173 Membrane bound YbgT-like protein ND449_05195 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ND449_05200 PF03061 Thioesterase superfamily ND449_05205 PF01618 MotA/TolQ/ExbB proton channel family ND449_05210 PF02472 Biopolymer transport protein ExbD/TolR ND449_05215 PF06519 TolA C-terminal ND449_05215 PF06519 TolA C-terminal ND449_05220 PF07676 WD40-like Beta Propeller Repeat ND449_05220 PF04052 TolB amino-terminal domain ND449_05225 PF00691 OmpA family ND449_05230 PF16331 TolA binding protein trimerisation ND449_05230 PF13174 Tetratricopeptide repeat ND449_05265 PF02445 Quinolinate synthetase A protein ND449_05270 PF04973 Nicotinamide mononucleotide transporter ND449_05275 PF01627 Hpt domain ND449_05275 PF00512 His Kinase A (phospho-acceptor) domain ND449_05275 PF00989 PAS fold ND449_05275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_05275 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND449_05275 PF00072 Response regulator receiver domain ND449_05280 PF00196 Bacterial regulatory proteins, luxR family ND449_05280 PF00072 Response regulator receiver domain ND449_05285 PF00793 DAHP synthetase I family ND449_05290 PF00300 Histidine phosphatase superfamily (branch 1) ND449_05300 PF01263 Aldose 1-epimerase ND449_05305 PF00288 GHMP kinases N terminal domain ND449_05305 PF08544 GHMP kinases C terminal ND449_05305 PF10509 Galactokinase galactose-binding signature ND449_05310 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ND449_05310 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ND449_05315 PF16363 GDP-mannose 4,6 dehydratase ND449_05330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_05330 PF03459 TOBE domain ND449_05335 PF10766 Multidrug efflux pump-associated protein AcrZ ND449_05345 PF00528 Binding-protein-dependent transport system inner membrane component ND449_05350 PF00005 ABC transporter ND449_05350 PF03459 TOBE domain ND449_05360 PF10282 Lactonase, 7-bladed beta-propeller ND449_05365 PF00202 Aminotransferase class-III ND449_05370 PF04055 Radical SAM superfamily ND449_05370 PF06968 Biotin and Thiamin Synthesis associated domain ND449_05375 PF00155 Aminotransferase class I and II ND449_05380 PF08241 Methyltransferase domain ND449_05390 PF00005 ABC transporter ND449_05395 PF04851 Type III restriction enzyme, res subunit ND449_05395 PF17757 UvrB interaction domain ND449_05395 PF12344 Ultra-violet resistance protein B ND449_05395 PF00271 Helicase conserved C-terminal domain ND449_05395 PF02151 UvrB/uvrC motif ND449_05400 PF09905 DNA-binding protein VF530 ND449_05415 PF01032 FecCD transport family ND449_05420 PF00005 ABC transporter ND449_05425 PF01933 Uncharacterised protein family UPF0052 ND449_05430 PF06463 Molybdenum Cofactor Synthesis C ND449_05430 PF04055 Radical SAM superfamily ND449_05435 PF01967 MoaC family ND449_05440 PF02597 ThiS family ND449_05445 PF02391 MoaE protein ND449_05450 PF01027 Inhibitor of apoptosis-promoting Bax1 ND449_05465 PF00005 ABC transporter ND449_05470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND449_05475 PF00440 Bacterial regulatory proteins, tetR family ND449_05475 PF09209 Tetracyclin repressor-like, C-terminal domain ND449_05480 PF00271 Helicase conserved C-terminal domain ND449_05480 PF00270 DEAD/DEAH box helicase ND449_05485 PF01207 Dihydrouridine synthase (Dus) ND449_05495 PF00768 D-alanyl-D-alanine carboxypeptidase ND449_05500 PF09330 D-lactate dehydrogenase, membrane binding ND449_05500 PF01565 FAD binding domain ND449_05505 PF01928 CYTH domain ND449_05510 PF01844 HNH endonuclease ND449_05520 PF04226 Transglycosylase associated protein ND449_05525 PF00005 ABC transporter ND449_05535 PF00528 Binding-protein-dependent transport system inner membrane component ND449_05540 PF00528 Binding-protein-dependent transport system inner membrane component ND449_05545 PF07308 Protein of unknown function (DUF1456) ND449_05550 PF00581 Rhodanese-like domain ND449_05555 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND449_05560 PF00528 Binding-protein-dependent transport system inner membrane component ND449_05565 PF00005 ABC transporter ND449_05570 PF00528 Binding-protein-dependent transport system inner membrane component ND449_05575 PF13520 Amino acid permease ND449_05580 PF01276 Orn/Lys/Arg decarboxylase, major domain ND449_05580 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND449_05580 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND449_05590 PF00892 EamA-like transporter family ND449_05595 PF00267 Gram-negative porin ND449_05600 PF06733 DEAD_2 ND449_05600 PF13307 Helicase C-terminal domain ND449_05605 PF02885 Glycosyl transferase family, helical bundle domain ND449_05610 PF05971 RNA methyltransferase ND449_05615 PF00005 ABC transporter ND449_05620 PF00528 Binding-protein-dependent transport system inner membrane component ND449_05625 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND449_05630 PF00210 Ferritin-like domain ND449_05635 PF13649 Methyltransferase domain ND449_05640 PF00892 EamA-like transporter family ND449_05645 PF13505 Outer membrane protein beta-barrel domain ND449_05650 PF03448 MgtE intracellular N domain ND449_05650 PF00571 CBS domain ND449_05650 PF01769 Divalent cation transporter ND449_05655 PF01545 Cation efflux family ND449_05655 PF16916 Dimerisation domain of Zinc Transporter ND449_05660 PF00005 ABC transporter ND449_05660 PF12848 ABC transporter ND449_05665 PF00899 ThiF family ND449_05670 PF00994 Probable molybdopterin binding domain ND449_05670 PF03454 MoeA C-terminal region (domain IV) ND449_05670 PF03453 MoeA N-terminal region (domain I and II) ND449_05680 PF00756 Putative esterase ND449_05685 PF08240 Alcohol dehydrogenase GroES-like domain ND449_05685 PF00107 Zinc-binding dehydrogenase ND449_05690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_05690 PF03466 LysR substrate binding domain ND449_05695 PF06779 Uncharacterised MFS-type transporter YbfB ND449_05700 PF01227 GTP cyclohydrolase I ND449_05705 PF04235 Protein of unknown function (DUF418) ND449_05710 PF00356 Bacterial regulatory proteins, lacI family ND449_05715 PF13407 Periplasmic binding protein domain ND449_05720 PF00005 ABC transporter ND449_05725 PF02653 Branched-chain amino acid transport system / permease component ND449_05730 PF02698 DUF218 domain ND449_05735 PF00390 Malic enzyme, N-terminal domain ND449_05735 PF03949 Malic enzyme, NAD binding domain ND449_05745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_05745 PF03466 LysR substrate binding domain ND449_05750 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ND449_05750 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND449_05755 PF04172 LrgB-like family ND449_05760 PF03788 LrgA family ND449_05770 PF01588 Putative tRNA binding domain ND449_05770 PF09334 tRNA synthetases class I (M) ND449_05775 PF10609 NUBPL iron-transfer P-loop NTPase ND449_05780 PF00485 Phosphoribulokinase / Uridine kinase family ND449_05785 PF00692 dUTPase ND449_05790 PF05170 AsmA family ND449_05795 PF03606 C4-dicarboxylate anaerobic carrier ND449_05800 PF03741 Integral membrane protein TerC family ND449_05800 PF03471 Transporter associated domain ND449_05800 PF00571 CBS domain ND449_05805 PF00483 Nucleotidyl transferase ND449_05810 PF00483 Nucleotidyl transferase ND449_05815 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ND449_05815 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ND449_05825 PF01502 Phosphoribosyl-AMP cyclohydrolase ND449_05825 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ND449_05830 PF00977 Histidine biosynthesis protein ND449_05835 PF00977 Histidine biosynthesis protein ND449_05840 PF00117 Glutamine amidotransferase class-I ND449_05845 PF00475 Imidazoleglycerol-phosphate dehydratase ND449_05850 PF00155 Aminotransferase class I and II ND449_05855 PF00815 Histidinol dehydrogenase ND449_05860 PF01634 ATP phosphoribosyltransferase ND449_05860 PF08029 HisG, C-terminal domain ND449_05870 PF01370 NAD dependent epimerase/dehydratase family ND449_05875 PF13417 Glutathione S-transferase, N-terminal domain ND449_05875 PF00043 Glutathione S-transferase, C-terminal domain ND449_05890 PF01053 Cys/Met metabolism PLP-dependent enzyme ND449_05895 PF00291 Pyridoxal-phosphate dependent enzyme ND449_05895 PF00571 CBS domain ND449_05900 PF00768 D-alanyl-D-alanine carboxypeptidase ND449_05900 PF07943 Penicillin-binding protein 5, C-terminal domain ND449_05905 PF03315 Serine dehydratase beta chain ND449_05905 PF03313 Serine dehydratase alpha chain ND449_05915 PF00455 DeoR C terminal sensor domain ND449_05915 PF08220 DeoR-like helix-turn-helix domain ND449_05920 PF01791 DeoC/LacD family aldolase ND449_05925 PF01569 PAP2 superfamily ND449_05935 PF06826 Predicted Permease Membrane Region ND449_05935 PF02080 TrkA-C domain ND449_05940 PF00462 Glutaredoxin ND449_05945 PF07214 Protein of unknown function (DUF1418) ND449_05950 PF10722 Putative bacterial sensory transduction regulator ND449_05955 PF13416 Bacterial extracellular solute-binding protein ND449_05960 PF00005 ABC transporter ND449_05960 PF08402 TOBE domain ND449_05965 PF00528 Binding-protein-dependent transport system inner membrane component ND449_05970 PF00528 Binding-protein-dependent transport system inner membrane component ND449_05975 PF10767 Protein of unknown function (DUF2593) ND449_05980 PF05958 tRNA (Uracil-5-)-methyltransferase ND449_05985 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND449_05990 PF00528 Binding-protein-dependent transport system inner membrane component ND449_05995 PF00528 Binding-protein-dependent transport system inner membrane component ND449_06000 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND449_06005 PF00005 ABC transporter ND449_06010 PF12883 Protein of unknown function (DUF3828) ND449_06015 PF01906 Putative heavy-metal-binding ND449_06020 PF01370 NAD dependent epimerase/dehydratase family ND449_06025 PF11066 Protein of unknown function (DUF2867) ND449_06025 PF13460 NAD(P)H-binding ND449_06030 PF01212 Beta-eliminating lyase ND449_06035 PF00970 Oxidoreductase FAD-binding domain ND449_06035 PF00111 2Fe-2S iron-sulfur cluster binding domain ND449_06035 PF00175 Oxidoreductase NAD-binding domain ND449_06040 PF03063 Prismane/CO dehydrogenase family ND449_06045 PF03956 Lysine exporter LysO ND449_06050 PF11398 Protein of unknown function (DUF2813) ND449_06055 PF04393 Protein of unknown function (DUF535) ND449_06060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND449_06065 PF00005 ABC transporter ND449_06065 PF02687 FtsX-like permease family ND449_06065 PF12704 MacB-like periplasmic core domain ND449_06070 PF00313 'Cold-shock' DNA-binding domain ND449_06075 PF02617 ATP-dependent Clp protease adaptor protein ClpS ND449_06080 PF00004 ATPase family associated with various cellular activities (AAA) ND449_06080 PF07724 AAA domain (Cdc48 subfamily) ND449_06080 PF17871 AAA lid domain ND449_06080 PF02861 Clp amino terminal domain, pathogenicity island component ND449_06080 PF10431 C-terminal, D2-small domain, of ClpB protein ND449_06085 PF01176 Translation initiation factor 1A / IF-1 ND449_06090 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ND449_06095 PF00664 ABC transporter transmembrane region ND449_06095 PF00005 ABC transporter ND449_06100 PF00005 ABC transporter ND449_06100 PF00664 ABC transporter transmembrane region ND449_06105 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND449_06110 PF01037 Lrp/AsnC ligand binding domain ND449_06115 PF09397 Ftsk gamma domain ND449_06115 PF17854 FtsK alpha domain ND449_06115 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND449_06115 PF01580 FtsK/SpoIIIE family ND449_06120 PF03548 Outer membrane lipoprotein carrier protein LolA ND449_06125 PF00004 ATPase family associated with various cellular activities (AAA) ND449_06125 PF16193 AAA C-terminal domain ND449_06125 PF12002 MgsA AAA+ ATPase C terminal ND449_06130 PF02403 Seryl-tRNA synthetase N-terminal domain ND449_06130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND449_06135 PF07690 Major Facilitator Superfamily ND449_06140 PF04055 Radical SAM superfamily ND449_06145 PF01228 Glycine radical ND449_06145 PF02901 Pyruvate formate lyase-like ND449_06150 PF01226 Formate/nitrite transporter ND449_06155 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ND449_06155 PF18381 YcaO cyclodehydratase C-terminal domain ND449_06160 PF00710 Asparaginase, N-terminal ND449_06160 PF17763 Glutaminase/Asparaginase C-terminal domain ND449_06165 PF00266 Aminotransferase class-V ND449_06170 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND449_06175 PF02224 Cytidylate kinase ND449_06180 PF00575 S1 RNA binding domain ND449_06185 PF00216 Bacterial DNA-binding protein ND449_06190 PF00753 Metallo-beta-lactamase superfamily ND449_06190 PF03772 Competence protein ND449_06195 PF00005 ABC transporter ND449_06195 PF00664 ABC transporter transmembrane region ND449_06200 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ND449_06205 PF07063 Domain of unknown function (DUF1338) ND449_06210 PF00313 'Cold-shock' DNA-binding domain ND449_06215 PF00313 'Cold-shock' DNA-binding domain ND449_06220 PF03966 Trm112p-like protein ND449_06225 PF02348 Cytidylyltransferase ND449_06230 PF01636 Phosphotransferase enzyme family ND449_06235 PF02698 DUF218 domain ND449_06240 PF13847 Methyltransferase domain ND449_06245 PF03882 MukF winged-helix domain ND449_06245 PF17193 MukF C-terminal domain ND449_06245 PF17192 MukF middle domain ND449_06250 PF04288 MukE-like family ND449_06255 PF04310 MukB N-terminal ND449_06255 PF16330 MukB hinge domain ND449_06260 PF03734 L,D-transpeptidase catalytic domain ND449_06260 PF01471 Putative peptidoglycan binding domain ND449_06265 PF05951 Bacterial protein of unknown function (DUF882) ND449_06270 PF00753 Metallo-beta-lactamase superfamily ND449_06275 PF00155 Aminotransferase class I and II ND449_06280 PF00267 Gram-negative porin ND449_06285 PF00152 tRNA synthetases class II (D, K and N) ND449_06285 PF01336 OB-fold nucleic acid binding domain ND449_06290 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ND449_06290 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ND449_06295 PF11940 Domain of unknown function (DUF3458) Ig-like fold ND449_06295 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ND449_06295 PF01433 Peptidase family M1 domain ND449_06300 PF01180 Dihydroorotate dehydrogenase ND449_06305 PF07126 Cell-division protein ZapC ND449_06310 PF00111 2Fe-2S iron-sulfur cluster binding domain ND449_06310 PF03476 MOSC N-terminal beta barrel domain ND449_06310 PF03473 MOSC domain ND449_06315 PF10672 S-adenosylmethionine-dependent methyltransferase ND449_06315 PF01170 Putative RNA methylase family UPF0020 ND449_06315 PF02926 THUMP domain ND449_06320 PF12848 ABC transporter ND449_06320 PF16326 ABC transporter C-terminal domain ND449_06320 PF00005 ABC transporter ND449_06325 PF04403 Paraquat-inducible protein A ND449_06330 PF02470 MlaD protein ND449_06335 PF03886 ABC-type transport auxiliary lipoprotein component ND449_06340 PF04957 Ribosome modulation factor ND449_06345 PF07977 FabA-like domain ND449_06350 PF13654 AAA domain ND449_06350 PF05362 Lon protease (S16) C-terminal proteolytic domain ND449_06355 PF06303 MatP N-terminal domain ND449_06355 PF17414 MatP C-terminal ribbon-helix-helix domain ND449_06360 PF00691 OmpA family ND449_06360 PF01389 OmpA-like transmembrane domain ND449_06365 PF03846 Cell division inhibitor SulA ND449_06370 PF04994 TfoX C-terminal domain ND449_06370 PF04993 TfoX N-terminal domain ND449_06375 PF12805 FUSC-like inner membrane protein yccS ND449_06380 PF03733 Inner membrane component domain ND449_06385 PF12462 DNA helicase IV / RNA helicase N terminal ND449_06385 PF00580 UvrD/REP helicase N-terminal domain ND449_06385 PF13361 UvrD-like helicase C-terminal domain ND449_06390 PF02142 MGS-like domain ND449_06395 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ND449_06400 PF13380 CoA binding domain ND449_06405 PF08755 Hemimethylated DNA-binding protein YccV like ND449_06410 PF10672 S-adenosylmethionine-dependent methyltransferase ND449_06410 PF17785 PUA-like domain ND449_06415 PF00708 Acylphosphatase ND449_06420 PF04358 DsrC like protein ND449_06430 PF00484 Carbonic anhydrase ND449_06435 PF00999 Sodium/hydrogen exchanger family ND449_06435 PF02080 TrkA-C domain ND449_06435 PF03471 Transporter associated domain ND449_06445 PF01757 Acyltransferase family ND449_06450 PF04349 Periplasmic glucan biosynthesis protein, MdoG ND449_06455 PF00535 Glycosyl transferase family 2 ND449_06465 PF01797 Transposase IS200 like ND449_06470 PF01385 Probable transposase ND449_06470 PF07282 Putative transposase DNA-binding domain ND449_06470 PF12323 Helix-turn-helix domain ND449_06475 PF00854 POT family ND449_06485 PF03279 Bacterial lipid A biosynthesis acyltransferase ND449_06490 PF00581 Rhodanese-like domain ND449_06490 PF12368 Rhodanase C-terminal ND449_06490 PF17773 UPF0176 acylphosphatase like domain ND449_06495 PF01594 AI-2E family transporter ND449_06500 PF00196 Bacterial regulatory proteins, luxR family ND449_06505 PF01266 FAD dependent oxidoreductase ND449_06510 PF13991 BssS protein family ND449_06515 PF06183 DinI-like family ND449_06520 PF01979 Amidohydrolase family ND449_06525 PF03992 Antibiotic biosynthesis monooxygenase ND449_06535 PF12111 Polyribonucleotide phosphorylase C terminal ND449_06535 PF10150 Ribonuclease E/G family ND449_06535 PF00575 S1 RNA binding domain ND449_06540 PF00849 RNA pseudouridylate synthase ND449_06540 PF01479 S4 domain ND449_06545 PF02545 Maf-like protein ND449_06550 PF02620 Large ribosomal RNA subunit accumulation protein YceD ND449_06555 PF01783 Ribosomal L32p protein family ND449_06560 PF02504 Fatty acid synthesis protein ND449_06565 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ND449_06565 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ND449_06570 PF00698 Acyl transferase domain ND449_06580 PF00550 Phosphopantetheine attachment site ND449_06585 PF02801 Beta-ketoacyl synthase, C-terminal domain ND449_06585 PF00109 Beta-ketoacyl synthase, N-terminal domain ND449_06590 PF01063 Amino-transferase class IV ND449_06595 PF02618 YceG-like family ND449_06600 PF02223 Thymidylate kinase ND449_06605 PF09115 DNA polymerase III, delta subunit, C terminal ND449_06610 PF01026 TatD related DNase ND449_06615 PF00367 phosphotransferase system, EIIB ND449_06615 PF02378 Phosphotransferase system, EIIC ND449_06620 PF01230 HIT domain ND449_06625 PF07233 Protein of unknown function (DUF1425) ND449_06630 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND449_06630 PF13036 Peptidoglycan-synthase activator LpoB ND449_06635 PF01636 Phosphotransferase enzyme family ND449_06640 PF00933 Glycosyl hydrolase family 3 N terminal domain ND449_06645 PF05728 Uncharacterised protein family (UPF0227) ND449_06650 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND449_06655 PF05433 Glycine zipper 2TM domain ND449_06660 PF00270 DEAD/DEAH box helicase ND449_06660 PF17757 UvrB interaction domain ND449_06660 PF03461 TRCF domain ND449_06660 PF02559 CarD-like/TRCF domain ND449_06660 PF00271 Helicase conserved C-terminal domain ND449_06665 PF02687 FtsX-like permease family ND449_06665 PF12704 MacB-like periplasmic core domain ND449_06670 PF00005 ABC transporter ND449_06675 PF12704 MacB-like periplasmic core domain ND449_06675 PF02687 FtsX-like permease family ND449_06680 PF00480 ROK family ND449_06685 PF02146 Sir2 family ND449_06690 PF07687 Peptidase dimerisation domain ND449_06690 PF01546 Peptidase family M20/M25/M40 ND449_06695 PF08007 Cupin superfamily protein ND449_06700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_06700 PF08918 PhoQ Sensor ND449_06705 PF00072 Response regulator receiver domain ND449_06705 PF00486 Transcriptional regulatory protein, C terminal ND449_06715 PF08328 Adenylosuccinate lyase C-terminal ND449_06715 PF00206 Lyase ND449_06720 PF04356 Protein of unknown function (DUF489) ND449_06730 PF00293 NUDIX domain ND449_06735 PF00849 RNA pseudouridylate synthase ND449_06740 PF00180 Isocitrate/isopropylmalate dehydrogenase ND449_06745 PF00196 Bacterial regulatory proteins, luxR family ND449_06745 PF03472 Autoinducer binding domain ND449_06750 PF00765 Autoinducer synthase ND449_06755 PF00232 Glycosyl hydrolase family 1 ND449_06765 PF01432 Peptidase family M3 ND449_06770 PF00672 HAMP domain ND449_06770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND449_06770 PF02203 Tar ligand binding domain homologue ND449_06790 PF01797 Transposase IS200 like ND449_06795 PF12323 Helix-turn-helix domain ND449_06795 PF07282 Putative transposase DNA-binding domain ND449_06795 PF01385 Probable transposase ND449_06805 PF00072 Response regulator receiver domain ND449_06810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_06810 PF00989 PAS fold ND449_06810 PF17203 Single cache domain 3 ND449_06810 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND449_06815 PF00939 Sodium:sulfate symporter transmembrane region ND449_06820 PF00413 Matrixin ND449_06820 PF08548 Peptidase M10 serralysin C terminal ND449_06820 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ND449_06825 PF02974 Protease inhibitor Inh ND449_06830 PF00664 ABC transporter transmembrane region ND449_06830 PF00005 ABC transporter ND449_06835 PF00529 HlyD membrane-fusion protein of T1SS ND449_06840 PF02321 Outer membrane efflux protein ND449_06855 PF02311 AraC-like ligand binding domain ND449_06855 PF12833 Helix-turn-helix domain ND449_06860 PF02562 PhoH-like protein ND449_06865 PF01699 Sodium/calcium exchanger protein ND449_06870 PF08021 Siderophore-interacting FAD-binding domain ND449_06870 PF04954 Siderophore-interacting protein ND449_06875 PF00672 HAMP domain ND449_06875 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ND449_06875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_06875 PF07730 Histidine kinase ND449_06885 PF02322 Cytochrome bd terminal oxidase subunit II ND449_06890 PF01654 Cytochrome bd terminal oxidase subunit I ND449_06895 PF00155 Aminotransferase class I and II ND449_06895 PF00392 Bacterial regulatory proteins, gntR family ND449_06900 PF00202 Aminotransferase class-III ND449_06905 PF04958 Arginine N-succinyltransferase beta subunit ND449_06910 PF00171 Aldehyde dehydrogenase family ND449_06915 PF04996 Succinylarginine dihydrolase ND449_06925 PF00267 Gram-negative porin ND449_06935 PF01979 Amidohydrolase family ND449_06940 PF07702 UTRA domain ND449_06940 PF00392 Bacterial regulatory proteins, gntR family ND449_06945 PF01979 Amidohydrolase family ND449_06950 PF05962 HutD ND449_06955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_06955 PF03466 LysR substrate binding domain ND449_06965 PF03824 High-affinity nickel-transport protein ND449_06970 PF17788 HypF Kae1-like domain ND449_06970 PF00708 Acylphosphatase ND449_06970 PF07503 HypF finger ND449_06970 PF01300 Telomere recombination ND449_06975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND449_06975 PF00384 Molybdopterin oxidoreductase ND449_06975 PF01568 Molydopterin dinucleotide binding domain ND449_06980 PF13247 4Fe-4S dicluster domain ND449_06980 PF12800 4Fe-4S binding domain ND449_06985 PF01750 Hydrogenase maturation protease ND449_06990 PF07450 Formate hydrogenlyase maturation protein HycH ND449_06995 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND449_07000 PF12838 4Fe-4S dicluster domain ND449_07005 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND449_07005 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND449_07005 PF00374 Nickel-dependent hydrogenase ND449_07010 PF00146 NADH dehydrogenase ND449_07015 PF00361 Proton-conducting membrane transporter ND449_07020 PF13247 4Fe-4S dicluster domain ND449_07025 PF11046 Transcriptional repressor of hyc and hyp operons ND449_07030 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ND449_07035 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND449_07040 PF01455 HupF/HypC family ND449_07045 PF01924 Hydrogenase formation hypA family ND449_07050 PF02769 AIR synthase related protein, C-terminal domain ND449_07050 PF00586 AIR synthase related protein, N-terminal domain ND449_07055 PF01590 GAF domain ND449_07055 PF00158 Sigma-54 interaction domain ND449_07055 PF02954 Bacterial regulatory protein, Fis family ND449_07065 PF13954 PapC N-terminal domain ND449_07065 PF00577 Outer membrane usher protein ND449_07070 PF02753 Pili assembly chaperone PapD, C-terminal domain ND449_07070 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND449_07085 PF12833 Helix-turn-helix domain ND449_07090 PF06071 Protein of unknown function (DUF933) ND449_07090 PF01926 50S ribosome-binding GTPase ND449_07100 PF01195 Peptidyl-tRNA hydrolase ND449_07105 PF10762 Protein of unknown function (DUF2583) ND449_07110 PF14572 Phosphoribosyl synthetase-associated domain ND449_07110 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ND449_07115 PF00288 GHMP kinases N terminal domain ND449_07115 PF08544 GHMP kinases C terminal ND449_07120 PF03550 Outer membrane lipoprotein LolB ND449_07125 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ND449_07125 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ND449_07125 PF01488 Shikimate / quinate 5-dehydrogenase ND449_07130 PF03462 PCRF domain ND449_07130 PF00472 RF-1 domain ND449_07135 PF13847 Methyltransferase domain ND449_07135 PF17827 PrmC N-terminal domain ND449_07140 PF04247 Invasion gene expression up-regulator, SirB ND449_07145 PF13369 Transglutaminase-like superfamily ND449_07150 PF00793 DAHP synthetase I family ND449_07155 PF01740 STAS domain ND449_07155 PF00916 Sulfate permease family ND449_07160 PF00990 Diguanylate cyclase, GGDEF domain ND449_07170 PF03009 Glycerophosphoryl diester phosphodiesterase family ND449_07180 PF00854 POT family ND449_07185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND449_07190 PF02811 PHP domain ND449_07195 PF02613 Nitrate reductase delta subunit ND449_07200 PF07273 Protein of unknown function (DUF1439) ND449_07210 PF07690 Major Facilitator Superfamily ND449_07215 PF13302 Acetyltransferase (GNAT) domain ND449_07220 PF04337 Protein of unknown function, DUF480 ND449_07225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND449_07230 PF03023 Lipid II flippase MurJ ND449_07235 PF17287 POTRA domain ND449_07235 PF08479 POTRA domain, ShlB-type ND449_07235 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND449_07240 PF13332 Hemagglutinin repeat ND449_07240 PF05860 haemagglutination activity domain ND449_07250 PF03485 Arginyl tRNA synthetase N terminal domain ND449_07250 PF05746 DALR anticodon binding domain ND449_07250 PF00750 tRNA synthetases class I (R) ND449_07255 PF06185 YecM protein ND449_07260 PF03932 CutC family ND449_07265 PF08003 Protein of unknown function (DUF1698) ND449_07270 PF13649 Methyltransferase domain ND449_07275 PF01124 MAPEG family ND449_07280 PF01904 Protein of unknown function DUF72 ND449_07290 PF02938 GAD domain ND449_07290 PF00152 tRNA synthetases class II (D, K and N) ND449_07290 PF01336 OB-fold nucleic acid binding domain ND449_07295 PF00293 NUDIX domain ND449_07300 PF01709 Transcriptional regulator ND449_07305 PF02075 Crossover junction endodeoxyribonuclease RuvC ND449_07310 PF07499 RuvA, C-terminal domain ND449_07310 PF01330 RuvA N terminal domain ND449_07315 PF05496 Holliday junction DNA helicase RuvB P-loop domain ND449_07315 PF17864 RuvB AAA lid domain ND449_07315 PF05491 RuvB C-terminal winged helix domain ND449_07320 PF00854 POT family ND449_07325 PF00950 ABC 3 transport family ND449_07330 PF00005 ABC transporter ND449_07335 PF01297 Zinc-uptake complex component A periplasmic ND449_07340 PF01551 Peptidase family M23 ND449_07340 PF08525 Opacity-associated protein A N-terminal motif ND449_07340 PF01476 LysM domain ND449_07345 PF03279 Bacterial lipid A biosynthesis acyltransferase ND449_07350 PF02887 Pyruvate kinase, alpha/beta domain ND449_07350 PF00224 Pyruvate kinase, barrel domain ND449_07355 PF01380 SIS domain ND449_07355 PF01418 Helix-turn-helix domain, rpiR family ND449_07360 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ND449_07360 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ND449_07365 PF01081 KDPG and KHG aldolase ND449_07370 PF00893 Small Multidrug Resistance protein ND449_07375 PF00893 Small Multidrug Resistance protein ND449_07380 PF01042 Endoribonuclease L-PSP ND449_07385 PF13307 Helicase C-terminal domain ND449_07385 PF04851 Type III restriction enzyme, res subunit ND449_07390 PF00814 Glycoprotease family ND449_07395 PF03843 Outer membrane lipoprotein Slp family ND449_07400 PF00501 AMP-binding enzyme ND449_07400 PF13193 AMP-binding enzyme C-terminal domain ND449_07405 PF01612 3'-5' exonuclease ND449_07405 PF00570 HRDC domain ND449_07410 PF03776 Septum formation topological specificity factor MinE ND449_07415 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ND449_07420 PF03775 Septum formation inhibitor MinC, C-terminal domain ND449_07420 PF05209 Septum formation inhibitor MinC, N-terminal domain ND449_07425 PF05166 YcgL domain ND449_07430 PF01557 Fumarylacetoacetate (FAA) hydrolase family ND449_07435 PF03692 Putative zinc- or iron-chelating domain ND449_07450 PF02600 Disulfide bond formation protein DsbB ND449_07455 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ND449_07460 PF07840 FadR C-terminal domain ND449_07460 PF00392 Bacterial regulatory proteins, gntR family ND449_07465 PF04293 SpoVR like protein ND449_07470 PF01266 FAD dependent oxidoreductase ND449_07475 PF01168 Alanine racemase, N-terminal domain ND449_07475 PF00842 Alanine racemase, C-terminal domain ND449_07480 PF07690 Major Facilitator Superfamily ND449_07490 PF00563 EAL domain ND449_07490 PF13426 PAS domain ND449_07490 PF00990 Diguanylate cyclase, GGDEF domain ND449_07495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_07495 PF03466 LysR substrate binding domain ND449_07500 PF03306 Alpha-acetolactate decarboxylase ND449_07505 PF00205 Thiamine pyrophosphate enzyme, central domain ND449_07505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND449_07505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND449_07510 PF04285 Protein of unknown function (DUF444) ND449_07515 PF06798 PrkA serine protein kinase C-terminal domain ND449_07515 PF08298 PrkA AAA domain ND449_07525 PF06629 MltA-interacting protein MipA ND449_07530 PF00884 Sulfatase ND449_07535 PF01263 Aldose 1-epimerase ND449_07540 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND449_07540 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND449_07545 PF01641 SelR domain ND449_07550 PF07023 Protein of unknown function (DUF1315) ND449_07555 PF00857 Isochorismatase family ND449_07560 PF00710 Asparaginase, N-terminal ND449_07560 PF17763 Glutaminase/Asparaginase C-terminal domain ND449_07565 PF01343 Peptidase family S49 ND449_07570 PF00881 Nitroreductase family ND449_07575 PF02769 AIR synthase related protein, C-terminal domain ND449_07575 PF00586 AIR synthase related protein, N-terminal domain ND449_07580 PF01751 Toprim domain ND449_07580 PF01131 DNA topoisomerase ND449_07585 PF07383 Protein of unknown function (DUF1496) ND449_07590 PF00293 NUDIX domain ND449_07595 PF03372 Endonuclease/Exonuclease/phosphatase family ND449_07605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_07605 PF03466 LysR substrate binding domain ND449_07625 PF01842 ACT domain ND449_07625 PF00551 Formyl transferase ND449_07630 PF02810 SEC-C motif ND449_07635 PF01734 Patatin-like phospholipase ND449_07640 PF00072 Response regulator receiver domain ND449_07645 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND449_07645 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND449_07645 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND449_07650 PF00816 H-NS histone family ND449_07655 PF00265 Thymidine kinase ND449_07660 PF00465 Iron-containing alcohol dehydrogenase ND449_07660 PF00171 Aldehyde dehydrogenase family ND449_07670 PF01914 MarC family integral membrane protein ND449_07675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND449_07680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND449_07685 PF00528 Binding-protein-dependent transport system inner membrane component ND449_07690 PF00528 Binding-protein-dependent transport system inner membrane component ND449_07690 PF12911 N-terminal TM domain of oligopeptide transport permease C ND449_07695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND449_07695 PF00005 ABC transporter ND449_07700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND449_07700 PF00005 ABC transporter ND449_07705 PF04269 Protein of unknown function, DUF440 ND449_07710 PF13396 Phospholipase_D-nuclease N-terminal ND449_07710 PF13091 PLD-like domain ND449_07730 PF03795 YCII-related domain ND449_07745 PF00486 Transcriptional regulatory protein, C terminal ND449_07755 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND449_07755 PF02753 Pili assembly chaperone PapD, C-terminal domain ND449_07760 PF13954 PapC N-terminal domain ND449_07760 PF00577 Outer membrane usher protein ND449_07760 PF13953 PapC C-terminal domain ND449_07780 PF03544 Gram-negative bacterial TonB protein C-terminal ND449_07785 PF03061 Thioesterase superfamily ND449_07790 PF04279 Intracellular septation protein A ND449_07795 PF00916 Sulfate permease family ND449_07795 PF01740 STAS domain ND449_07805 PF03692 Putative zinc- or iron-chelating domain ND449_07810 PF03922 OmpW family ND449_07820 PF00290 Tryptophan synthase alpha chain ND449_07825 PF00291 Pyridoxal-phosphate dependent enzyme ND449_07830 PF00218 Indole-3-glycerol phosphate synthase ND449_07830 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ND449_07835 PF02885 Glycosyl transferase family, helical bundle domain ND449_07835 PF00591 Glycosyl transferase family, a/b domain ND449_07840 PF00117 Glutamine amidotransferase class-I ND449_07845 PF04715 Anthranilate synthase component I, N terminal region ND449_07845 PF00425 chorismate binding enzyme ND449_07850 PF02811 PHP domain ND449_07855 PF01300 Telomere recombination ND449_07875 PF00849 RNA pseudouridylate synthase ND449_07875 PF01479 S4 domain ND449_07880 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ND449_07885 PF00106 short chain dehydrogenase ND449_07890 PF01343 Peptidase family S49 ND449_07890 PF08496 Peptidase family S49 N-terminal ND449_07895 PF10692 Protein of unknown function (DUF2498) ND449_07900 PF01131 DNA topoisomerase ND449_07900 PF01751 Toprim domain ND449_07900 PF01396 Topoisomerase DNA binding C4 zinc finger ND449_07900 PF08272 Topoisomerase I zinc-ribbon-like ND449_07905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_07905 PF03466 LysR substrate binding domain ND449_07920 PF00330 Aconitase family (aconitate hydratase) ND449_07920 PF00694 Aconitase C-terminal domain ND449_07925 PF00925 GTP cyclohydrolase II ND449_07930 PF01569 PAP2 superfamily ND449_07935 PF06305 Lipopolysaccharide assembly protein A domain ND449_07940 PF18073 Rubredoxin metal binding domain ND449_07950 PF07338 Protein of unknown function (DUF1471) ND449_07955 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND449_07960 PF01253 Translation initiation factor SUI1 ND449_07965 PF05433 Glycine zipper 2TM domain ND449_07970 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND449_07975 PF00563 EAL domain ND449_07975 PF00990 Diguanylate cyclase, GGDEF domain ND449_07975 PF05231 MASE1 ND449_07975 PF08447 PAS fold ND449_07975 PF08448 PAS fold ND449_07975 PF13426 PAS domain ND449_07980 PF00575 S1 RNA binding domain ND449_07980 PF08206 Ribonuclease B OB domain ND449_07980 PF00773 RNB domain ND449_07985 PF10576 Iron-sulfur binding domain of endonuclease III ND449_07985 PF00633 Helix-hairpin-helix motif ND449_07985 PF00730 HhH-GPD superfamily base excision DNA repair protein ND449_07990 PF02508 Rnf-Nqr subunit, membrane protein ND449_07995 PF04205 FMN-binding domain ND449_08000 PF03116 NQR2, RnfD, RnfE family ND449_08005 PF12833 Helix-turn-helix domain ND449_08005 PF06445 GyrI-like small molecule binding domain ND449_08010 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND449_08010 PF10531 SLBB domain ND449_08010 PF13375 RnfC Barrel sandwich hybrid domain ND449_08010 PF13237 4Fe-4S dicluster domain ND449_08015 PF04060 Putative Fe-S cluster ND449_08020 PF02508 Rnf-Nqr subunit, membrane protein ND449_08025 PF10754 Protein of unknown function (DUF2569) ND449_08030 PF01268 Formate--tetrahydrofolate ligase ND449_08035 PF09313 Domain of unknown function (DUF1971) ND449_08035 PF03848 Tellurite resistance protein TehB ND449_08040 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ND449_08040 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND449_08045 PF13593 SBF-like CPA transporter family (DUF4137) ND449_08050 PF00962 Adenosine/AMP deaminase ND449_08055 PF06097 Bacterial protein of unknown function (DUF945) ND449_08060 PF01238 Phosphomannose isomerase type I ND449_08065 PF10415 Fumarase C C-terminus ND449_08065 PF00206 Lyase ND449_08070 PF05472 DNA replication terminus site-binding protein (Ter protein) ND449_08075 PF00480 ROK family ND449_08085 PF00654 Voltage gated chloride channel ND449_08090 PF06649 Protein of unknown function (DUF1161) ND449_08095 PF06932 Protein of unknown function (DUF1283) ND449_08100 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ND449_08105 PF00106 short chain dehydrogenase ND449_08110 PF01510 N-acetylmuramoyl-L-alanine amidase ND449_08130 PF01048 Phosphorylase superfamily ND449_08130 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ND449_08170 PF13419 Haloacid dehalogenase-like hydrolase ND449_08180 PF06445 GyrI-like small molecule binding domain ND449_08185 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ND449_08185 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND449_08190 PF00027 Cyclic nucleotide-binding domain ND449_08190 PF13545 Crp-like helix-turn-helix domain ND449_08195 PF00582 Universal stress protein family ND449_08205 PF00455 DeoR C terminal sensor domain ND449_08205 PF08220 DeoR-like helix-turn-helix domain ND449_08210 PF03611 PTS system sugar-specific permease component ND449_08215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND449_08220 PF00596 Class II Aldolase and Adducin N-terminal domain ND449_08225 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND449_08230 PF01261 Xylose isomerase-like TIM barrel ND449_08235 PF02233 NAD(P) transhydrogenase beta subunit ND449_08240 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ND449_08240 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ND449_08240 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ND449_08245 PF07338 Protein of unknown function (DUF1471) ND449_08250 PF13520 Amino acid permease ND449_08260 PF00072 Response regulator receiver domain ND449_08260 PF00486 Transcriptional regulatory protein, C terminal ND449_08265 PF00672 HAMP domain ND449_08265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_08265 PF00512 His Kinase A (phospho-acceptor) domain ND449_08270 PF00080 Copper/zinc superoxide dismutase (SODC) ND449_08275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND449_08280 PF12833 Helix-turn-helix domain ND449_08285 PF01161 Phosphatidylethanolamine-binding protein ND449_08290 PF06392 Acid shock protein repeat ND449_08295 PF00089 Trypsin ND449_08300 PF11898 Domain of unknown function (DUF3418) ND449_08300 PF00270 DEAD/DEAH box helicase ND449_08300 PF04408 Helicase associated domain (HA2) ND449_08300 PF00271 Helicase conserved C-terminal domain ND449_08300 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ND449_08305 PF02525 Flavodoxin-like fold ND449_08310 PF07027 Protein of unknown function (DUF1318) ND449_08315 PF13617 YnbE-like lipoprotein ND449_08325 PF11739 Dicarboxylate transport ND449_08330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND449_08330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND449_08335 PF03724 META domain ND449_08340 PF03891 Domain of unknown function (DUF333) ND449_08345 PF02308 MgtC family ND449_08350 PF00893 Small Multidrug Resistance protein ND449_08355 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ND449_08355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND449_08355 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ND449_08355 PF10371 Domain of unknown function ND449_08355 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ND449_08360 PF01171 PP-loop family ND449_08365 PF01544 CorA-like Mg2+ transporter protein ND449_08370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND449_08375 PF00246 Zinc carboxypeptidase ND449_08380 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ND449_08380 PF13378 Enolase C-terminal domain-like ND449_08385 PF08534 Redoxin ND449_08390 PF18024 Helix-turn-helix domain ND449_08390 PF00158 Sigma-54 interaction domain ND449_08395 PF09722 Protein of unknown function (DUF2384) ND449_08400 PF08808 RES domain ND449_08405 PF05128 Domain of unknown function (DUF697) ND449_08410 PF04317 YcjX-like family, DUF463 ND449_08415 PF09584 Phage shock protein PspD (Phageshock_PspD) ND449_08420 PF04024 PspC domain ND449_08425 PF06667 Phage shock protein B ND449_08430 PF04012 PspA/IM30 family ND449_08435 PF02954 Bacterial regulatory protein, Fis family ND449_08435 PF00158 Sigma-54 interaction domain ND449_08445 PF02917 Pertussis toxin, subunit 1 ND449_08450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND449_08455 PF00528 Binding-protein-dependent transport system inner membrane component ND449_08460 PF00528 Binding-protein-dependent transport system inner membrane component ND449_08460 PF12911 N-terminal TM domain of oligopeptide transport permease C ND449_08465 PF00005 ABC transporter ND449_08465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND449_08470 PF00005 ABC transporter ND449_08480 PF00854 POT family ND449_08490 PF00226 DnaJ domain ND449_08490 PF01556 DnaJ C terminal domain ND449_08500 PF04893 Yip1 domain ND449_08510 PF11656 YjbD family (DUF3811) ND449_08515 PF02798 Glutathione S-transferase, N-terminal domain ND449_08515 PF00043 Glutathione S-transferase, C-terminal domain ND449_08520 PF08543 Phosphomethylpyrimidine kinase ND449_08525 PF00579 tRNA synthetases class I (W and Y) ND449_08525 PF01479 S4 domain ND449_08530 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ND449_08530 PF01243 Pyridoxamine 5'-phosphate oxidase ND449_08535 PF03702 Anhydro-N-acetylmuramic acid kinase ND449_08540 PF05433 Glycine zipper 2TM domain ND449_08545 PF01047 MarR family ND449_08555 PF00248 Aldo/keto reductase family ND449_08560 PF06945 Protein of unknown function (DUF1289) ND449_08565 PF08019 Phosphoethanolamine transferase EptA/EptB ND449_08565 PF00884 Sulfatase ND449_08570 PF16925 Tetracyclin repressor-like, C-terminal domain ND449_08570 PF00440 Bacterial regulatory proteins, tetR family ND449_08575 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND449_08580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND449_08585 PF00929 Exonuclease ND449_08590 PF00462 Glutaredoxin ND449_08595 PF00877 NlpC/P60 family ND449_08600 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND449_08600 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND449_08610 PF00356 Bacterial regulatory proteins, lacI family ND449_08615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_08615 PF03466 LysR substrate binding domain ND449_08620 PF07690 Major Facilitator Superfamily ND449_08630 PF00677 Lumazine binding domain ND449_08635 PF01554 MatE ND449_08655 PF00224 Pyruvate kinase, barrel domain ND449_08655 PF02887 Pyruvate kinase, alpha/beta domain ND449_08660 PF04728 Lipoprotein leucine-zipper ND449_08665 PF17969 L,D-transpeptidase C-terminal domain ND449_08665 PF01476 LysM domain ND449_08665 PF03734 L,D-transpeptidase catalytic domain ND449_08670 PF02657 Fe-S metabolism associated domain ND449_08675 PF00266 Aminotransferase class-V ND449_08680 PF01458 Uncharacterized protein family (UPF0051) ND449_08685 PF00005 ABC transporter ND449_08690 PF01458 Uncharacterized protein family (UPF0051) ND449_08695 PF01521 Iron-sulphur cluster biosynthesis ND449_08700 PF03061 Thioesterase superfamily ND449_08705 PF13183 4Fe-4S dicluster domain ND449_08705 PF02913 FAD linked oxidases, C-terminal domain ND449_08705 PF01565 FAD binding domain ND449_08710 PF01594 AI-2E family transporter ND449_08720 PF00391 PEP-utilising enzyme, mobile domain ND449_08720 PF02896 PEP-utilising enzyme, TIM barrel domain ND449_08720 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ND449_08725 PF03618 Kinase/pyrophosphorylase ND449_08730 PF00793 DAHP synthetase I family ND449_08735 PF10636 Hemin uptake protein hemP ND449_08740 PF07715 TonB-dependent Receptor Plug Domain ND449_08740 PF00593 TonB dependent receptor ND449_08745 PF05171 Haemin-degrading HemS.ChuX domain ND449_08750 PF01497 Periplasmic binding protein ND449_08755 PF01032 FecCD transport family ND449_08760 PF00005 ABC transporter ND449_08765 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ND449_08770 PF10437 Bacterial lipoate protein ligase C-terminus ND449_08770 PF03099 Biotin/lipoate A/B protein ligase family ND449_08775 PF00877 NlpC/P60 family ND449_08785 PF00892 EamA-like transporter family ND449_08790 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ND449_08795 PF01522 Polysaccharide deacetylase ND449_08800 PF01370 NAD dependent epimerase/dehydratase family ND449_08800 PF02911 Formyl transferase, C-terminal domain ND449_08800 PF00551 Formyl transferase ND449_08805 PF00535 Glycosyl transferase family 2 ND449_08810 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND449_08815 PF00005 ABC transporter ND449_08820 PF01032 FecCD transport family ND449_08825 PF00145 C-5 cytosine-specific DNA methylase ND449_08825 PF13411 MerR HTH family regulatory protein ND449_08830 PF09553 Eco47II restriction endonuclease ND449_08865 PF02661 Fic/DOC family ND449_08880 PF05154 TM2 domain ND449_08885 PF00216 Bacterial DNA-binding protein ND449_08890 PF03483 B3/4 domain ND449_08890 PF03484 tRNA synthetase B5 domain ND449_08890 PF03147 Ferredoxin-fold anticodon binding domain ND449_08890 PF01588 Putative tRNA binding domain ND449_08890 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ND449_08895 PF01409 tRNA synthetases class II core domain (F) ND449_08895 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ND449_08900 PF00453 Ribosomal protein L20 ND449_08905 PF01632 Ribosomal protein L35 ND449_08910 PF00707 Translation initiation factor IF-3, C-terminal domain ND449_08910 PF05198 Translation initiation factor IF-3, N-terminal domain ND449_08915 PF03129 Anticodon binding domain ND449_08915 PF02824 TGS domain ND449_08915 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND449_08915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND449_08945 PF01914 MarC family integral membrane protein ND449_08950 PF01464 Transglycosylase SLT domain ND449_08955 PF01297 Zinc-uptake complex component A periplasmic ND449_08960 PF00005 ABC transporter ND449_08965 PF00950 ABC 3 transport family ND449_08970 PF00950 ABC 3 transport family ND449_08975 PF03881 Fructosamine kinase ND449_08980 PF14002 YniB-like protein ND449_08985 PF13419 Haloacid dehalogenase-like hydrolase ND449_08990 PF04307 LexA-binding, inner membrane-associated putative hydrolase ND449_08995 PF00375 Sodium:dicarboxylate symporter family ND449_09000 PF01510 N-acetylmuramoyl-L-alanine amidase ND449_09005 PF09339 IclR helix-turn-helix domain ND449_09005 PF01614 Bacterial transcriptional regulator ND449_09010 PF07690 Major Facilitator Superfamily ND449_09020 PF01435 Peptidase family M48 ND449_09025 PF11818 C-terminal domain of tail specific protease (DUF3340) ND449_09025 PF00595 PDZ domain ND449_09025 PF03572 Peptidase family S41 ND449_09025 PF17804 Tail specific protease N-terminal domain ND449_09030 PF17516 ProQ C-terminal domain ND449_09030 PF04352 ProQ/FINO family ND449_09035 PF13185 GAF domain ND449_09040 PF04403 Paraquat-inducible protein A ND449_09045 PF02470 MlaD protein ND449_09050 PF00360 Phytochrome region ND449_09050 PF00990 Diguanylate cyclase, GGDEF domain ND449_09050 PF01590 GAF domain ND449_09050 PF00563 EAL domain ND449_09055 PF07351 Protein of unknown function (DUF1480) ND449_09080 PF05643 Putative bacterial lipoprotein (DUF799) ND449_09090 PF03783 Curli production assembly/transport component CsgG ND449_09095 PF10753 Toxin GhoT_OrtT ND449_09115 PF00144 Beta-lactamase ND449_09260 PF00959 Phage lysozyme ND449_09265 PF04971 Bacteriophage P21 holin S ND449_09285 PF07102 Protein of unknown function (DUF1364) ND449_09295 PF05063 MT-A70 ND449_09300 PF01555 DNA methylase ND449_09310 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND449_09310 PF17854 FtsK alpha domain ND449_09310 PF09397 Ftsk gamma domain ND449_09310 PF01580 FtsK/SpoIIIE family ND449_09350 PF00717 Peptidase S24-like ND449_09350 PF01381 Helix-turn-helix ND449_09415 PF07825 Excisionase-like protein ND449_09425 PF10709 Protein of unknown function (DUF2511) ND449_09430 PF05425 Copper resistance protein D ND449_09435 PF04234 CopC domain ND449_09440 PF00210 Ferritin-like domain ND449_09445 PF06440 DNA polymerase III, theta subunit ND449_09450 PF00561 alpha/beta hydrolase fold ND449_09460 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ND449_09460 PF00326 Prolyl oligopeptidase family ND449_09465 PF13995 YebF-like protein ND449_09470 PF04266 ASCH domain ND449_09475 PF07130 YebG protein ND449_09480 PF03880 DbpA RNA binding domain ND449_09480 PF00270 DEAD/DEAH box helicase ND449_09480 PF00271 Helicase conserved C-terminal domain ND449_09485 PF02222 ATP-grasp domain ND449_09490 PF03701 Uncharacterised protein family (UPF0181) ND449_09495 PF00425 chorismate binding enzyme ND449_09495 PF04715 Anthranilate synthase component I, N terminal region ND449_09500 PF00293 NUDIX domain ND449_09505 PF03315 Serine dehydratase beta chain ND449_09505 PF03313 Serine dehydratase alpha chain ND449_09510 PF03741 Integral membrane protein TerC family ND449_09510 PF03471 Transporter associated domain ND449_09515 PF03610 PTS system fructose IIA component ND449_09515 PF03830 PTS system sorbose subfamily IIB component ND449_09520 PF03609 PTS system sorbose-specific iic component ND449_09525 PF03613 PTS system mannose/fructose/sorbose family IID component ND449_09530 PF06173 Protein of unknown function (DUF986) ND449_09535 PF02659 Putative manganese efflux pump ND449_09540 PF02441 Flavoprotein ND449_09555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND449_09555 PF02770 Acyl-CoA dehydrogenase, middle domain ND449_09555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND449_09565 PF05199 GMC oxidoreductase ND449_09565 PF00732 GMC oxidoreductase ND449_09570 PF00550 Phosphopantetheine attachment site ND449_09570 PF00501 AMP-binding enzyme ND449_09570 PF13193 AMP-binding enzyme C-terminal domain ND449_09570 PF00668 Condensation domain ND449_09575 PF07690 Major Facilitator Superfamily ND449_09595 PF13847 Methyltransferase domain ND449_09600 PF00905 Penicillin binding protein transpeptidase domain ND449_09600 PF03717 Penicillin-binding Protein dimerisation domain ND449_09605 PF02578 Multi-copper polyphenol oxidoreductase laccase ND449_09610 PF00313 'Cold-shock' DNA-binding domain ND449_09615 PF10736 Protein of unknown function (DUF2627) ND449_09620 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ND449_09625 PF00324 Amino acid permease ND449_09640 PF13974 YebO-like protein ND449_09645 PF13998 MgrB protein ND449_09650 PF13996 YobH-like protein ND449_09655 PF10964 Protein of unknown function (DUF2766) ND449_09660 PF12833 Helix-turn-helix domain ND449_09675 PF13520 Amino acid permease ND449_09680 PF00664 ABC transporter transmembrane region ND449_09680 PF00005 ABC transporter ND449_09690 PF00360 Phytochrome region ND449_09690 PF00990 Diguanylate cyclase, GGDEF domain ND449_09690 PF01590 GAF domain ND449_09690 PF00563 EAL domain ND449_09695 PF03372 Endonuclease/Exonuclease/phosphatase family ND449_09705 PF06411 HdeA/HdeB family ND449_09710 PF07478 D-ala D-ala ligase C-terminus ND449_09710 PF01820 D-ala D-ala ligase N-terminus ND449_09725 PF08241 Methyltransferase domain ND449_09730 PF00313 'Cold-shock' DNA-binding domain ND449_09735 PF00313 'Cold-shock' DNA-binding domain ND449_09740 PF00313 'Cold-shock' DNA-binding domain ND449_09750 PF04794 YdjC-like protein ND449_09755 PF12833 Helix-turn-helix domain ND449_09755 PF07883 Cupin domain ND449_09760 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ND449_09765 PF00232 Glycosyl hydrolase family 1 ND449_09770 PF02378 Phosphotransferase system, EIIC ND449_09775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND449_09780 PF00849 RNA pseudouridylate synthase ND449_09780 PF01479 S4 domain ND449_09790 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ND449_09795 PF03553 Na+/H+ antiporter family ND449_09805 PF13520 Amino acid permease ND449_09820 PF00849 RNA pseudouridylate synthase ND449_09825 PF00282 Pyridoxal-dependent decarboxylase conserved domain ND449_09830 PF13520 Amino acid permease ND449_09835 PF04960 Glutaminase ND449_09865 PF13673 Acetyltransferase (GNAT) domain ND449_09875 PF00034 Cytochrome c ND449_09875 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ND449_09885 PF00528 Binding-protein-dependent transport system inner membrane component ND449_09890 PF00005 ABC transporter ND449_09900 PF00672 HAMP domain ND449_09900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND449_09900 PF02203 Tar ligand binding domain homologue ND449_09905 PF00665 Integrase core domain ND449_09905 PF13276 HTH-like domain ND449_09905 PF13333 Integrase core domain ND449_09925 PF01066 CDP-alcohol phosphatidyltransferase ND449_09930 PF08459 UvrC Helix-hairpin-helix N-terminal ND449_09930 PF02151 UvrB/uvrC motif ND449_09930 PF01541 GIY-YIG catalytic domain ND449_09935 PF00196 Bacterial regulatory proteins, luxR family ND449_09935 PF00072 Response regulator receiver domain ND449_09940 PF10769 Protein of unknown function (DUF2594) ND449_09960 PF00324 Amino acid permease ND449_09965 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND449_09965 PF01276 Orn/Lys/Arg decarboxylase, major domain ND449_09965 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND449_09970 PF13520 Amino acid permease ND449_09975 PF18500 CadC C-terminal domain 1 ND449_09975 PF00486 Transcriptional regulatory protein, C terminal ND449_09980 PF00474 Sodium:solute symporter family ND449_09985 PF00171 Aldehyde dehydrogenase family ND449_09985 PF01619 Proline dehydrogenase ND449_09985 PF14850 DNA-binding domain of Proline dehydrogenase ND449_09985 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ND449_09990 PF00005 ABC transporter ND449_09995 PF00528 Binding-protein-dependent transport system inner membrane component ND449_10000 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND449_10005 PF00291 Pyridoxal-phosphate dependent enzyme ND449_10010 PF02899 Phage integrase, N-terminal SAM-like domain ND449_10015 PF04542 Sigma-70 region 2 ND449_10015 PF04545 Sigma-70, region 4 ND449_10015 PF04539 Sigma-70 region 3 ND449_10020 PF00700 Bacterial flagellin C-terminal helical region ND449_10020 PF08884 Flagellin D3 domain ND449_10020 PF00669 Bacterial flagellin N-terminal helical region ND449_10025 PF00700 Bacterial flagellin C-terminal helical region ND449_10025 PF08884 Flagellin D3 domain ND449_10025 PF00669 Bacterial flagellin N-terminal helical region ND449_10030 PF00700 Bacterial flagellin C-terminal helical region ND449_10030 PF08884 Flagellin D3 domain ND449_10030 PF00669 Bacterial flagellin N-terminal helical region ND449_10035 PF07196 Flagellin hook IN motif ND449_10035 PF07195 Flagellar hook-associated protein 2 C-terminus ND449_10035 PF02465 Flagellar hook-associated protein 2 N-terminus ND449_10040 PF02561 Flagellar protein FliS ND449_10045 PF05400 Flagellar protein FliT ND449_10050 PF12833 Helix-turn-helix domain ND449_10055 PF01966 HD domain ND449_10060 PF07885 Ion channel ND449_10060 PF02254 TrkA-N domain ND449_10065 PF01223 DNA/RNA non-specific endonuclease ND449_10075 PF02049 Flagellar hook-basal body complex protein FliE ND449_10080 PF01514 Secretory protein of YscJ/FliF family ND449_10080 PF08345 Flagellar M-ring protein C-terminal ND449_10085 PF01706 FliG C-terminal domain ND449_10085 PF14841 FliG middle domain ND449_10085 PF14842 FliG N-terminal domain ND449_10090 PF02108 Flagellar assembly protein FliH ND449_10095 PF18269 T3SS EscN ATPase C-terminal domain ND449_10095 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND449_10100 PF02050 Flagellar FliJ protein ND449_10105 PF02120 Flagellar hook-length control protein FliK ND449_10110 PF03748 Flagellar basal body-associated protein FliL ND449_10115 PF02154 Flagellar motor switch protein FliM ND449_10115 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND449_10120 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND449_10120 PF16973 Flagellar motor switch protein FliN N-terminal ND449_10125 PF04347 Flagellar biosynthesis protein, FliO ND449_10130 PF00813 FliP family ND449_10135 PF01313 Bacterial export proteins, family 3 ND449_10140 PF01311 Bacterial export proteins, family 1 ND449_10145 PF00669 Bacterial flagellin N-terminal helical region ND449_10150 PF00460 Flagella basal body rod protein ND449_10150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND449_10155 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ND449_10155 PF10135 Rod binding protein ND449_10160 PF02119 Flagellar P-ring protein ND449_10165 PF02107 Flagellar L-ring protein ND449_10170 PF00460 Flagella basal body rod protein ND449_10170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND449_10175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND449_10175 PF00460 Flagella basal body rod protein ND449_10180 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND449_10180 PF00460 Flagella basal body rod protein ND449_10180 PF07559 Flagellar basal body protein FlaE ND449_10185 PF13861 FlgD Tudor-like domain ND449_10185 PF13860 FlgD Ig-like domain ND449_10185 PF03963 Flagellar hook capping protein - N-terminal region ND449_10190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND449_10190 PF00460 Flagella basal body rod protein ND449_10195 PF00460 Flagella basal body rod protein ND449_10200 PF13144 Chaperone for flagella basal body P-ring formation ND449_10200 PF17656 FlgA N-terminal domain ND449_10205 PF04316 Anti-sigma-28 factor, FlgM ND449_10210 PF05130 FlgN protein ND449_10215 PF06366 Flagellar protein FlhE ND449_10220 PF00771 FHIPEP family ND449_10225 PF01312 FlhB HrpN YscU SpaS Family ND449_10230 PF00082 Subtilase family ND449_10230 PF01483 Proprotein convertase P-domain ND449_10235 PF00196 Bacterial regulatory proteins, luxR family ND449_10245 PF00419 Fimbrial protein ND449_10250 PF00577 Outer membrane usher protein ND449_10250 PF13954 PapC N-terminal domain ND449_10250 PF13953 PapC C-terminal domain ND449_10255 PF02753 Pili assembly chaperone PapD, C-terminal domain ND449_10255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND449_10265 PF00419 Fimbrial protein ND449_10295 PF04344 Chemotaxis phosphatase, CheZ ND449_10300 PF00072 Response regulator receiver domain ND449_10305 PF01339 CheB methylesterase ND449_10305 PF00072 Response regulator receiver domain ND449_10310 PF03705 CheR methyltransferase, all-alpha domain ND449_10310 PF01739 CheR methyltransferase, SAM binding domain ND449_10315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND449_10315 PF02203 Tar ligand binding domain homologue ND449_10315 PF00672 HAMP domain ND449_10320 PF02203 Tar ligand binding domain homologue ND449_10320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND449_10320 PF00672 HAMP domain ND449_10325 PF01584 CheW-like domain ND449_10330 PF01584 CheW-like domain ND449_10330 PF02895 Signal transducing histidine kinase, homodimeric domain ND449_10330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_10330 PF01627 Hpt domain ND449_10330 PF09078 CheY binding ND449_10335 PF13677 Membrane MotB of proton-channel complex MotA/MotB ND449_10335 PF00691 OmpA family ND449_10340 PF01618 MotA/TolQ/ExbB proton channel family ND449_10345 PF05280 Flagellar transcriptional activator (FlhC) ND449_10350 PF05247 Flagellar transcriptional activator (FlhD) ND449_10355 PF00582 Universal stress protein family ND449_10360 PF02308 MgtC family ND449_10365 PF00672 HAMP domain ND449_10365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND449_10365 PF02203 Tar ligand binding domain homologue ND449_10370 PF10781 Dextransucrase DSRB ND449_10375 PF00313 'Cold-shock' DNA-binding domain ND449_10385 PF00356 Bacterial regulatory proteins, lacI family ND449_10390 PF02929 Beta galactosidase small chain ND449_10390 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND449_10390 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND449_10390 PF16353 Domain of unknown function(DUF4981) ND449_10390 PF00703 Glycosyl hydrolases family 2 ND449_10395 PF14765 Polyketide synthase dehydratase ND449_10395 PF08659 KR domain ND449_10395 PF02801 Beta-ketoacyl synthase, C-terminal domain ND449_10395 PF00550 Phosphopantetheine attachment site ND449_10395 PF16197 Ketoacyl-synthetase C-terminal extension ND449_10395 PF00107 Zinc-binding dehydrogenase ND449_10395 PF08240 Alcohol dehydrogenase GroES-like domain ND449_10395 PF00698 Acyl transferase domain ND449_10395 PF00109 Beta-ketoacyl synthase, N-terminal domain ND449_10400 PF10777 Inner membrane protein YlaC ND449_10410 PF14001 YdfZ protein ND449_10420 PF06167 Glucose-regulated metallo-peptidase M90 ND449_10430 PF13356 Arm DNA-binding domain ND449_10430 PF00589 Phage integrase family ND449_10445 PF13693 Winged helix-turn-helix DNA-binding ND449_10480 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ND449_10500 PF04335 VirB8 protein ND449_10505 PF03524 Conjugal transfer protein ND449_10510 PF03743 Bacterial conjugation TrbI-like protein ND449_10515 PF00437 Type II/IV secretion system protein ND449_10530 PF18818 Metallopeptidase superfamily domain ND449_10530 PF08401 Domain of unknown function (DUF1738) ND449_10590 PF01648 4'-phosphopantetheinyl transferase superfamily ND449_10590 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ND449_10595 PF00939 Sodium:sulfate symporter transmembrane region ND449_10600 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ND449_10605 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase ND449_10610 PF04223 Citrate lyase, alpha subunit (CitF) ND449_10615 PF03328 HpcH/HpaI aldolase/citrate lyase family ND449_10620 PF06857 Malonate decarboxylase delta subunit (MdcD) ND449_10625 PF08218 Citrate lyase ligase C-terminal domain ND449_10630 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND449_10630 PF17203 Single cache domain 3 ND449_10630 PF00989 PAS fold ND449_10630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_10635 PF12431 Transcriptional regulator ND449_10635 PF00072 Response regulator receiver domain ND449_10640 PF00196 Bacterial regulatory proteins, luxR family ND449_10640 PF00072 Response regulator receiver domain ND449_10645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_10645 PF07730 Histidine kinase ND449_10645 PF05231 MASE1 ND449_10650 PF07690 Major Facilitator Superfamily ND449_10660 PF00528 Binding-protein-dependent transport system inner membrane component ND449_10665 PF00005 ABC transporter ND449_10665 PF08402 TOBE domain ND449_10680 PF04363 Protein of unknown function (DUF496) ND449_10685 PF04632 Fusaric acid resistance protein family ND449_10695 PF08411 Exonuclease C-terminal ND449_10695 PF00929 Exonuclease ND449_10700 PF13520 Amino acid permease ND449_10705 PF00593 TonB dependent receptor ND449_10705 PF07715 TonB-dependent Receptor Plug Domain ND449_10710 PF00005 ABC transporter ND449_10715 PF01032 FecCD transport family ND449_10725 PF00324 Amino acid permease ND449_10730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_10730 PF03466 LysR substrate binding domain ND449_10740 PF03601 Conserved hypothetical protein 698 ND449_10745 PF01261 Xylose isomerase-like TIM barrel ND449_10750 PF02378 Phosphotransferase system, EIIC ND449_10750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND449_10755 PF00294 pfkB family carbohydrate kinase ND449_10760 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND449_10760 PF00381 PTS HPr component phosphorylation site ND449_10765 PF00293 NUDIX domain ND449_10770 PF03264 NapC/NirT cytochrome c family, N-terminal region ND449_10775 PF00384 Molybdopterin oxidoreductase ND449_10775 PF18364 Molybdopterin oxidoreductase N-terminal domain ND449_10775 PF01568 Molydopterin dinucleotide binding domain ND449_10780 PF03692 Putative zinc- or iron-chelating domain ND449_10785 PF03222 Tryptophan/tyrosine permease family ND449_10790 PF01132 Elongation factor P (EF-P) OB domain ND449_10790 PF09285 Elongation factor P, C-terminal ND449_10790 PF08207 Elongation factor P (EF-P) KOW-like domain ND449_10795 PF03786 D-mannonate dehydratase (UxuA) ND449_10800 PF08125 Mannitol dehydrogenase C-terminal domain ND449_10800 PF01232 Mannitol dehydrogenase Rossmann domain ND449_10810 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND449_10810 PF07683 Cobalamin synthesis protein cobW C-terminal domain ND449_10815 PF01569 PAP2 superfamily ND449_10820 PF00877 NlpC/P60 family ND449_10825 PF12792 CSS motif domain associated with EAL ND449_10825 PF00563 EAL domain ND449_10830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND449_10835 PF00528 Binding-protein-dependent transport system inner membrane component ND449_10840 PF00528 Binding-protein-dependent transport system inner membrane component ND449_10840 PF12911 N-terminal TM domain of oligopeptide transport permease C ND449_10845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND449_10845 PF00005 ABC transporter ND449_10850 PF13989 YejG-like protein ND449_10855 PF07690 Major Facilitator Superfamily ND449_10860 PF00849 RNA pseudouridylate synthase ND449_10860 PF01479 S4 domain ND449_10865 PF00271 Helicase conserved C-terminal domain ND449_10865 PF04851 Type III restriction enzyme, res subunit ND449_10870 PF01386 Ribosomal L25p family ND449_10875 PF04245 37-kD nucleoid-associated bacterial protein ND449_10880 PF07208 Protein of unknown function (DUF1414) ND449_10885 PF11893 Domain of unknown function (DUF3413) ND449_10885 PF00884 Sulfatase ND449_10900 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND449_10910 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) ND449_10915 PF04865 Baseplate J-like protein ND449_10960 PF04984 Phage tail sheath protein subtilisin-like domain ND449_10960 PF17482 Phage tail sheath C-terminal domain ND449_11010 PF03354 Phage Terminase ND449_11030 PF03245 Bacteriophage Rz lysis protein ND449_11035 PF13539 D-alanyl-D-alanine carboxypeptidase ND449_11065 PF00069 Protein kinase domain ND449_11065 PF03793 PASTA domain ND449_11070 PF01555 DNA methylase ND449_11080 PF06147 Protein of unknown function (DUF968) ND449_11095 PF05869 DNA N-6-adenine-methyltransferase (Dam) ND449_11100 PF03354 Phage Terminase ND449_11135 PF10065 Uncharacterized conserved protein (DUF2303) ND449_11180 PF06183 DinI-like family ND449_11185 PF12706 Beta-lactamase superfamily domain ND449_11190 PF00144 Beta-lactamase ND449_11195 PF13302 Acetyltransferase (GNAT) domain ND449_11210 PF00267 Gram-negative porin ND449_11215 PF07690 Major Facilitator Superfamily ND449_11220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_11220 PF01627 Hpt domain ND449_11220 PF16359 RcsD-ABL domain ND449_11225 PF00196 Bacterial regulatory proteins, luxR family ND449_11225 PF00072 Response regulator receiver domain ND449_11230 PF00512 His Kinase A (phospho-acceptor) domain ND449_11230 PF09456 RcsC Alpha-Beta-Loop (ABL) ND449_11230 PF00072 Response regulator receiver domain ND449_11230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_11235 PF03989 DNA gyrase C-terminal domain, beta-propeller ND449_11235 PF00521 DNA gyrase/topoisomerase IV, subunit A ND449_11245 PF03477 ATP cone domain ND449_11245 PF02867 Ribonucleotide reductase, barrel domain ND449_11245 PF00317 Ribonucleotide reductase, all-alpha domain ND449_11250 PF00268 Ribonucleotide reductase, small chain ND449_11255 PF00111 2Fe-2S iron-sulfur cluster binding domain ND449_11265 PF03974 Ecotin ND449_11270 PF00994 Probable molybdopterin binding domain ND449_11275 PF04138 GtrA-like protein ND449_11280 PF00535 Glycosyl transferase family 2 ND449_11290 PF03222 Tryptophan/tyrosine permease family ND449_11295 PF07437 YfaZ precursor ND449_11300 PF00199 Catalase ND449_11300 PF06628 Catalase-related immune-responsive ND449_11305 PF00501 AMP-binding enzyme ND449_11305 PF13193 AMP-binding enzyme C-terminal domain ND449_11310 PF13378 Enolase C-terminal domain-like ND449_11315 PF00378 Enoyl-CoA hydratase/isomerase ND449_11320 PF12697 Alpha/beta hydrolase family ND449_11325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND449_11325 PF16582 Middle domain of thiamine pyrophosphate ND449_11325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND449_11330 PF00425 chorismate binding enzyme ND449_11335 PF05957 Bacterial protein of unknown function (DUF883) ND449_11340 PF06496 Protein of unknown function (DUF1097) ND449_11345 PF00361 Proton-conducting membrane transporter ND449_11350 PF00361 Proton-conducting membrane transporter ND449_11355 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ND449_11355 PF00361 Proton-conducting membrane transporter ND449_11360 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ND449_11365 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ND449_11370 PF12838 4Fe-4S dicluster domain ND449_11375 PF00146 NADH dehydrogenase ND449_11380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND449_11380 PF00384 Molybdopterin oxidoreductase ND449_11380 PF01568 Molydopterin dinucleotide binding domain ND449_11380 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ND449_11385 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND449_11385 PF10531 SLBB domain ND449_11385 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ND449_11395 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND449_11395 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND449_11400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND449_11405 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ND449_11410 PF03466 LysR substrate binding domain ND449_11410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_11415 PF00155 Aminotransferase class I and II ND449_11425 PF03600 Citrate transporter ND449_11425 PF02080 TrkA-C domain ND449_11435 PF03887 YfbU domain ND449_11440 PF04217 Protein of unknown function, DUF412 ND449_11445 PF00871 Acetokinase family ND449_11450 PF01515 Phosphate acetyl/butaryl transferase ND449_11450 PF07085 DRTGG domain ND449_11455 PF00356 Bacterial regulatory proteins, lacI family ND449_11455 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND449_11460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND449_11470 PF03611 PTS system sugar-specific permease component ND449_11475 PF00293 NUDIX domain ND449_11480 PF12850 Calcineurin-like phosphoesterase superfamily domain ND449_11495 PF00043 Glutathione S-transferase, C-terminal domain ND449_11495 PF02798 Glutathione S-transferase, N-terminal domain ND449_11500 PF01370 NAD dependent epimerase/dehydratase family ND449_11500 PF08338 Domain of unknown function (DUF1731) ND449_11505 PF00005 ABC transporter ND449_11510 PF00528 Binding-protein-dependent transport system inner membrane component ND449_11515 PF00528 Binding-protein-dependent transport system inner membrane component ND449_11520 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND449_11530 PF02441 Flavoprotein ND449_11535 PF00156 Phosphoribosyl transferase domain ND449_11540 PF02674 Colicin V production protein ND449_11545 PF05036 Sporulation related domain ND449_11550 PF02875 Mur ligase family, glutamate ligase domain ND449_11550 PF08245 Mur ligase middle domain ND449_11555 PF17848 Acetyl-coA carboxylase zinc finger domain ND449_11555 PF01039 Carboxyl transferase domain ND449_11560 PF09335 SNARE associated Golgi protein ND449_11565 PF01416 tRNA pseudouridine synthase ND449_11570 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND449_11570 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND449_11575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND449_11575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND449_11575 PF11890 Domain of unknown function (DUF3410) ND449_11595 PF00155 Aminotransferase class I and II ND449_11600 PF00578 AhpC/TSA family ND449_11630 PF00109 Beta-ketoacyl synthase, N-terminal domain ND449_11630 PF02801 Beta-ketoacyl synthase, C-terminal domain ND449_11635 PF01266 FAD dependent oxidoreductase ND449_11635 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ND449_11640 PF08891 YfcL protein ND449_11645 PF04315 Elongation factor P hydroxylase ND449_11650 PF01925 Sulfite exporter TauE/SafE ND449_11655 PF03411 Penicillin-insensitive murein endopeptidase ND449_11660 PF01264 Chorismate synthase ND449_11665 PF05175 Methyltransferase small domain ND449_11670 PF01713 Smr domain ND449_11675 PF00300 Histidine phosphatase superfamily (branch 1) ND449_11680 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND449_11680 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND449_11680 PF00378 Enoyl-CoA hydratase/isomerase ND449_11685 PF02803 Thiolase, C-terminal domain ND449_11685 PF00108 Thiolase, N-terminal domain ND449_11690 PF04175 Protein of unknown function (DUF406) ND449_11695 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ND449_11700 PF04333 MlaA lipoprotein ND449_11705 PF03918 Cytochrome C biogenesis protein ND449_11710 PF03918 Cytochrome C biogenesis protein ND449_11715 PF08534 Redoxin ND449_11720 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ND449_11720 PF01578 Cytochrome C assembly protein ND449_11725 PF03100 CcmE ND449_11730 PF04995 Heme exporter protein D (CcmD) ND449_11735 PF01578 Cytochrome C assembly protein ND449_11740 PF03379 CcmB protein ND449_11745 PF00005 ABC transporter ND449_11755 PF13356 Arm DNA-binding domain ND449_11755 PF14659 Phage integrase, N-terminal SAM-like domain ND449_11755 PF00589 Phage integrase family ND449_11760 PF08676 MutL C terminal dimerisation domain ND449_11760 PF01119 DNA mismatch repair protein, C-terminal domain ND449_11815 PF03831 PhnA domain ND449_11815 PF08274 PhnA Zinc-Ribbon ND449_11820 PF13406 Transglycosylase SLT domain ND449_11835 PF01292 Prokaryotic cytochrome b561 ND449_11840 PF00155 Aminotransferase class I and II ND449_11845 PF07350 Protein of unknown function (DUF1479) ND449_11850 PF06580 Histidine kinase ND449_11850 PF07694 5TMR of 5TMR-LYT ND449_11850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_11855 PF04397 LytTr DNA-binding domain ND449_11855 PF00072 Response regulator receiver domain ND449_11860 PF07690 Major Facilitator Superfamily ND449_11865 PF02685 Glucokinase ND449_11875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_11875 PF03466 LysR substrate binding domain ND449_11885 PF01566 Natural resistance-associated macrophage protein ND449_11890 PF07670 Nucleoside recognition ND449_11890 PF07662 Na+ dependent nucleoside transporter C-terminus ND449_11890 PF01773 Na+ dependent nucleoside transporter N-terminus ND449_11935 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND449_11960 PF12843 Putative quorum-sensing-regulated virulence factor ND449_11965 PF12826 Helix-hairpin-helix motif ND449_11965 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ND449_11965 PF01653 NAD-dependent DNA ligase adenylation domain ND449_11965 PF00533 BRCA1 C Terminus (BRCT) domain ND449_11965 PF03120 NAD-dependent DNA ligase OB-fold domain ND449_11970 PF04354 ZipA, C-terminal FtsZ-binding domain ND449_11980 PF00291 Pyridoxal-phosphate dependent enzyme ND449_11985 PF00381 PTS HPr component phosphorylation site ND449_11990 PF02896 PEP-utilising enzyme, TIM barrel domain ND449_11990 PF05524 PEP-utilising enzyme, N-terminal ND449_11990 PF00391 PEP-utilising enzyme, mobile domain ND449_11995 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND449_12000 PF00291 Pyridoxal-phosphate dependent enzyme ND449_12005 PF00005 ABC transporter ND449_12010 PF00528 Binding-protein-dependent transport system inner membrane component ND449_12015 PF00528 Binding-protein-dependent transport system inner membrane component ND449_12025 PF07690 Major Facilitator Superfamily ND449_12030 PF01418 Helix-turn-helix domain, rpiR family ND449_12030 PF01380 SIS domain ND449_12035 PF04074 YhcH/YjgK/YiaL ND449_12040 PF00480 ROK family ND449_12045 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ND449_12050 PF00701 Dihydrodipicolinate synthetase family ND449_12055 PF04261 Dyp-type peroxidase family ND449_12060 PF06572 Protein of unknown function (DUF1131) ND449_12065 PF04076 Bacterial OB fold (BOF) protein ND449_12115 PF00583 Acetyltransferase (GNAT) family ND449_12120 PF01218 Coproporphyrinogen III oxidase ND449_12125 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ND449_12130 PF00390 Malic enzyme, N-terminal domain ND449_12130 PF03949 Malic enzyme, NAD binding domain ND449_12130 PF01515 Phosphate acetyl/butaryl transferase ND449_12135 PF00293 NUDIX domain ND449_12140 PF03264 NapC/NirT cytochrome c family, N-terminal region ND449_12145 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ND449_12150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND449_12150 PF00384 Molybdopterin oxidoreductase ND449_12150 PF01568 Molydopterin dinucleotide binding domain ND449_12150 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND449_12155 PF03927 NapD protein ND449_12160 PF00037 4Fe-4S binding domain ND449_12160 PF12800 4Fe-4S binding domain ND449_12160 PF13187 4Fe-4S dicluster domain ND449_12165 PF00072 Response regulator receiver domain ND449_12165 PF00196 Bacterial regulatory proteins, luxR family ND449_12175 PF00873 AcrB/AcrD/AcrF family ND449_12185 PF01817 Chorismate mutase type II ND449_12190 PF03960 ArsC family ND449_12195 PF07687 Peptidase dimerisation domain ND449_12195 PF01546 Peptidase family M20/M25/M40 ND449_12200 PF02557 D-alanyl-D-alanine carboxypeptidase ND449_12205 PF13980 Uncharacterised protein family (UPF0370) ND449_12210 PF02230 Phospholipase/Carboxylesterase ND449_12215 PF08351 Domain of unknown function (DUF1726) ND449_12215 PF13718 GNAT acetyltransferase 2 ND449_12215 PF05127 Helicase ND449_12215 PF17176 tRNA-binding domain ND449_12220 PF04284 Protein of unknown function (DUF441) ND449_12225 PF01259 SAICAR synthetase ND449_12230 PF06804 NlpB/DapX lipoprotein ND449_12235 PF00701 Dihydrodipicolinate synthetase family ND449_12240 PF01842 ACT domain ND449_12245 PF00578 AhpC/TSA family ND449_12250 PF01594 AI-2E family transporter ND449_12255 PF07720 Tetratricopeptide repeat ND449_12255 PF01435 Peptidase family M48 ND449_12260 PF03960 ArsC family ND449_12265 PF00308 Bacterial dnaA protein ND449_12270 PF00860 Permease family ND449_12280 PF02769 AIR synthase related protein, C-terminal domain ND449_12280 PF00586 AIR synthase related protein, N-terminal domain ND449_12285 PF00551 Formyl transferase ND449_12290 PF13302 Acetyltransferase (GNAT) domain ND449_12295 PF00005 ABC transporter ND449_12300 PF00528 Binding-protein-dependent transport system inner membrane component ND449_12305 PF00528 Binding-protein-dependent transport system inner membrane component ND449_12310 PF02503 Polyphosphate kinase middle domain ND449_12310 PF13090 Polyphosphate kinase C-terminal domain 2 ND449_12310 PF17941 Polyphosphate kinase C-terminal domain 1 ND449_12310 PF13089 Polyphosphate kinase N-terminal domain ND449_12315 PF02541 Ppx/GppA phosphatase family ND449_12325 PF01769 Divalent cation transporter ND449_12325 PF00571 CBS domain ND449_12325 PF03448 MgtE intracellular N domain ND449_12330 PF00012 Hsp70 protein ND449_12340 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND449_12340 PF02753 Pili assembly chaperone PapD, C-terminal domain ND449_12345 PF13954 PapC N-terminal domain ND449_12345 PF00577 Outer membrane usher protein ND449_12345 PF13953 PapC C-terminal domain ND449_12360 PF13533 Biotin-lipoyl like ND449_12365 PF00873 AcrB/AcrD/AcrF family ND449_12370 PF00873 AcrB/AcrD/AcrF family ND449_12375 PF07690 Major Facilitator Superfamily ND449_12380 PF00512 His Kinase A (phospho-acceptor) domain ND449_12380 PF00672 HAMP domain ND449_12380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_12385 PF00072 Response regulator receiver domain ND449_12385 PF00486 Transcriptional regulatory protein, C terminal ND449_12390 PF07411 Domain of unknown function (DUF1508) ND449_12395 PF01136 Peptidase family U32 ND449_12395 PF16325 Peptidase family U32 C-terminal domain ND449_12400 PF00781 Diacylglycerol kinase catalytic domain ND449_12415 PF08543 Phosphomethylpyrimidine kinase ND449_12430 PF02540 NAD synthase ND449_12430 PF00958 GMP synthase C terminal domain ND449_12430 PF00117 Glutamine amidotransferase class-I ND449_12435 PF00478 IMP dehydrogenase / GMP reductase domain ND449_12435 PF00571 CBS domain ND449_12440 PF02601 Exonuclease VII, large subunit ND449_12440 PF13742 OB-fold nucleic acid binding domain ND449_12445 PF07191 zinc-ribbons ND449_12450 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ND449_12450 PF01926 50S ribosome-binding GTPase ND449_12455 PF13360 PQQ-like domain ND449_12460 PF09976 Tetratricopeptide repeat-like domain ND449_12465 PF13393 Histidyl-tRNA synthetase ND449_12465 PF03129 Anticodon binding domain ND449_12470 PF04551 GcpE protein ND449_12475 PF13464 Domain of unknown function (DUF4115) ND449_12485 PF04055 Radical SAM superfamily ND449_12490 PF00334 Nucleoside diphosphate kinase ND449_12500 PF00912 Transglycosylase ND449_12500 PF00905 Penicillin binding protein transpeptidase domain ND449_12500 PF06832 Penicillin-Binding Protein C-terminus Family ND449_12505 PF00207 Alpha-2-macroglobulin family ND449_12505 PF07703 Alpha-2-macroglobulin bait region domain ND449_12505 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ND449_12505 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ND449_12505 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ND449_12505 PF17962 Bacterial macroglobulin domain 6 ND449_12505 PF01835 MG2 domain ND449_12505 PF07678 A-macroglobulin TED domain ND449_12505 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain ND449_12510 PF07179 SseB protein N-terminal domain ND449_12510 PF14581 SseB protein C-terminal domain ND449_12515 PF00883 Cytosol aminopeptidase family, catalytic domain ND449_12515 PF12404 Peptidase ND449_12520 PF04384 Iron-sulphur cluster assembly ND449_12525 PF00111 2Fe-2S iron-sulfur cluster binding domain ND449_12530 PF00012 Hsp70 protein ND449_12535 PF00226 DnaJ domain ND449_12535 PF07743 HSCB C-terminal oligomerisation domain ND449_12540 PF01521 Iron-sulphur cluster biosynthesis ND449_12545 PF01592 NifU-like N terminal domain ND449_12550 PF00266 Aminotransferase class-V ND449_12555 PF02082 Transcriptional regulator ND449_12560 PF00588 SpoU rRNA Methylase family ND449_12565 PF00459 Inositol monophosphatase family ND449_12570 PF03824 High-affinity nickel-transport protein ND449_12575 PF06226 Protein of unknown function (DUF1007) ND449_12580 PF00874 PRD domain ND449_12585 PF12832 MFS_1 like family ND449_12590 PF00464 Serine hydroxymethyltransferase ND449_12595 PF00175 Oxidoreductase NAD-binding domain ND449_12595 PF00042 Globin ND449_12595 PF00970 Oxidoreductase FAD-binding domain ND449_12600 PF14502 Helix-turn-helix domain ND449_12600 PF14503 YhfZ C-terminal domain ND449_12610 PF01168 Alanine racemase, N-terminal domain ND449_12615 PF02126 Phosphotriesterase family ND449_12620 PF10941 Protein of unknown function DUF2620 ND449_12625 PF10797 Protein of unknown function ND449_12630 PF00543 Nitrogen regulatory protein P-II ND449_12635 PF00795 Carbon-nitrogen hydrolase ND449_12635 PF02540 NAD synthase ND449_12640 PF00072 Response regulator receiver domain ND449_12640 PF00158 Sigma-54 interaction domain ND449_12645 PF13942 YfhG lipoprotein ND449_12650 PF00512 His Kinase A (phospho-acceptor) domain ND449_12650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_12660 PF02769 AIR synthase related protein, C-terminal domain ND449_12660 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ND449_12660 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ND449_12665 PF01464 Transglycosylase SLT domain ND449_12665 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND449_12670 PF14437 MafB19-like deaminase ND449_12680 PF02378 Phosphotransferase system, EIIC ND449_12680 PF00367 phosphotransferase system, EIIB ND449_12685 PF01380 SIS domain ND449_12690 PF01418 Helix-turn-helix domain, rpiR family ND449_12690 PF01380 SIS domain ND449_12695 PF12838 4Fe-4S dicluster domain ND449_12700 PF01648 4'-phosphopantetheinyl transferase superfamily ND449_12705 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ND449_12710 PF02565 Recombination protein O C terminal ND449_12710 PF11967 Recombination protein O N terminal ND449_12715 PF07650 KH domain ND449_12715 PF01926 50S ribosome-binding GTPase ND449_12720 PF00035 Double-stranded RNA binding motif ND449_12720 PF14622 Ribonuclease-III-like ND449_12725 PF10502 Signal peptidase, peptidase S26 ND449_12730 PF06421 GTP-binding protein LepA C-terminus ND449_12730 PF00679 Elongation factor G C-terminus ND449_12730 PF03144 Elongation factor Tu domain 2 ND449_12730 PF00009 Elongation factor Tu GTP binding domain ND449_12740 PF03888 MucB/RseB N-terminal domain ND449_12740 PF17188 MucB/RseB C-terminal domain ND449_12745 PF03873 Anti sigma-E protein RseA, C-terminal domain ND449_12745 PF03872 Anti sigma-E protein RseA, N-terminal domain ND449_12750 PF04542 Sigma-70 region 2 ND449_12750 PF08281 Sigma-70, region 4 ND449_12755 PF02910 Fumarate reductase flavoprotein C-term ND449_12755 PF00890 FAD binding domain ND449_12760 PF05175 Methyltransferase small domain ND449_12765 PF00270 DEAD/DEAH box helicase ND449_12765 PF00271 Helicase conserved C-terminal domain ND449_12770 PF12796 Ankyrin repeats (3 copies) ND449_12780 PF01228 Glycine radical ND449_12785 PF03167 Uracil DNA glycosylase superfamily ND449_12790 PF01025 GrpE ND449_12795 PF01513 ATP-NAD kinase ND449_12800 PF02463 RecF/RecN/SMC N terminal domain ND449_12805 PF04355 SmpA / OmlA family ND449_12810 PF03658 RnfH family Ubiquitin ND449_12815 PF03364 Polyketide cyclase / dehydrase and lipid transport ND449_12820 PF01668 SmpB protein ND449_12830 PF13356 Arm DNA-binding domain ND449_12830 PF00589 Phage integrase family ND449_12860 PF01926 50S ribosome-binding GTPase ND449_12865 PF08220 DeoR-like helix-turn-helix domain ND449_12865 PF13280 WYL domain ND449_12890 PF06067 Domain of unknown function (DUF932) ND449_12895 PF03230 Antirestriction protein ND449_12900 PF04002 RadC-like JAB domain ND449_12905 PF06174 Protein of unknown function (DUF987) ND449_12910 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A ND449_12915 PF06755 CbtA_toxin of type IV toxin-antitoxin system ND449_12955 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND449_12955 PF02753 Pili assembly chaperone PapD, C-terminal domain ND449_12960 PF13954 PapC N-terminal domain ND449_12960 PF00577 Outer membrane usher protein ND449_12960 PF13953 PapC C-terminal domain ND449_12985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_12985 PF03466 LysR substrate binding domain ND449_13000 PF01527 Transposase ND449_13010 PF18413 Neuraminidase-like domain ND449_13010 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND449_13010 PF18413 Neuraminidase-like domain ND449_13010 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND449_13020 PF03534 Salmonella virulence plasmid 65kDa B protein ND449_13020 PF12255 Insecticide toxin TcdB middle/C-terminal region ND449_13020 PF12256 Insecticide toxin TcdB middle/N-terminal region ND449_13025 PF18807 Tripartite Tc toxins repeat ND449_13025 PF14431 YwqJ-like deaminase ND449_13055 PF00571 CBS domain ND449_13055 PF01380 SIS domain ND449_13060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND449_13060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND449_13070 PF02653 Branched-chain amino acid transport system / permease component ND449_13075 PF00005 ABC transporter ND449_13085 PF00561 alpha/beta hydrolase fold ND449_13090 PF03466 LysR substrate binding domain ND449_13090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_13095 PF02652 L-lactate permease ND449_13100 PF01070 FMN-dependent dehydrogenase ND449_13105 PF06039 Malate:quinone oxidoreductase (Mqo) ND449_13110 PF00313 'Cold-shock' DNA-binding domain ND449_13120 PF06711 Protein of unknown function (DUF1198) ND449_13125 PF09400 Protein of unknown function (DUF2002) ND449_13140 PF07972 NrdI Flavodoxin like ND449_13145 PF02867 Ribonucleotide reductase, barrel domain ND449_13145 PF00317 Ribonucleotide reductase, all-alpha domain ND449_13145 PF08343 Ribonucleotide reductase N-terminal ND449_13150 PF00268 Ribonucleotide reductase, small chain ND449_13155 PF00005 ABC transporter ND449_13155 PF00571 CBS domain ND449_13160 PF00528 Binding-protein-dependent transport system inner membrane component ND449_13165 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND449_13175 PF07690 Major Facilitator Superfamily ND449_13180 PF01047 MarR family ND449_13190 PF00529 HlyD membrane-fusion protein of T1SS ND449_13190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND449_13195 PF07690 Major Facilitator Superfamily ND449_13200 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND449_13200 PF00588 SpoU rRNA Methylase family ND449_13205 PF00085 Thioredoxin ND449_13210 PF03942 DTW domain ND449_13215 PF00583 Acetyltransferase (GNAT) family ND449_13215 PF13380 CoA binding domain ND449_13215 PF13607 Succinyl-CoA ligase like flavodoxin domain ND449_13220 PF13091 PLD-like domain ND449_13225 PF10043 Predicted periplasmic lipoprotein (DUF2279) ND449_13255 PF00005 ABC transporter ND449_13255 PF09383 NIL domain ND449_13260 PF00528 Binding-protein-dependent transport system inner membrane component ND449_13265 PF03180 NLPA lipoprotein ND449_13270 PF16358 RcsF lipoprotein ND449_13275 PF01980 tRNA-methyltransferase O ND449_13275 PF18389 TrmO C-terminal domain ND449_13280 PF03129 Anticodon binding domain ND449_13280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND449_13280 PF04073 Aminoacyl-tRNA editing domain ND449_13285 PF04170 NlpE N-terminal domain ND449_13285 PF17185 NlpE C-terminal OB domain ND449_13290 PF00472 RF-1 domain ND449_13295 PF07152 YaeQ protein ND449_13300 PF06786 Uncharacterised protein family (UPF0253) ND449_13305 PF07073 Modulator of Rho-dependent transcription termination (ROF) ND449_13310 PF00034 Cytochrome c ND449_13315 PF01171 PP-loop family ND449_13315 PF09179 TilS substrate binding domain ND449_13315 PF11734 TilS substrate C-terminal domain ND449_13320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND449_13335 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ND449_13340 PF01336 OB-fold nucleic acid binding domain ND449_13340 PF02811 PHP domain ND449_13340 PF07733 Bacterial DNA polymerase III alpha NTPase domain ND449_13340 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ND449_13340 PF14579 Helix-hairpin-helix motif ND449_13345 PF01351 Ribonuclease HII ND449_13350 PF02684 Lipid-A-disaccharide synthetase ND449_13355 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ND449_13355 PF00132 Bacterial transferase hexapeptide (six repeats) ND449_13360 PF07977 FabA-like domain ND449_13365 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ND449_13365 PF00132 Bacterial transferase hexapeptide (six repeats) ND449_13370 PF03938 Outer membrane protein (OmpH-like) ND449_13375 PF01103 Surface antigen ND449_13375 PF07244 Surface antigen variable number repeat ND449_13380 PF02163 Peptidase family M50 ND449_13380 PF17820 PDZ domain ND449_13390 PF01255 Putative undecaprenyl diphosphate synthase ND449_13395 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ND449_13395 PF13288 DXP reductoisomerase C-terminal domain ND449_13395 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ND449_13400 PF01765 Ribosome recycling factor ND449_13405 PF00696 Amino acid kinase family ND449_13410 PF00889 Elongation factor TS ND449_13415 PF00318 Ribosomal protein S2 ND449_13420 PF00557 Metallopeptidase family M24 ND449_13425 PF08335 GlnD PII-uridylyltransferase ND449_13425 PF01966 HD domain ND449_13425 PF01909 Nucleotidyltransferase domain ND449_13425 PF01842 ACT domain ND449_13430 PF00132 Bacterial transferase hexapeptide (six repeats) ND449_13430 PF14602 Hexapeptide repeat of succinyl-transferase ND449_13430 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ND449_13435 PF11944 Protein of unknown function (DUF3461) ND449_13440 PF00258 Flavodoxin ND449_13445 PF00849 RNA pseudouridylate synthase ND449_13450 PF04287 tRNA pseudouridine synthase C ND449_13455 PF07348 Syd protein (SUKH-2) ND449_13460 PF14489 QueF-like protein ND449_13460 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ND449_13465 PF11892 Domain of unknown function (DUF3412) ND449_13465 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ND449_13465 PF03641 Possible lysine decarboxylase ND449_13470 PF01367 5'-3' exonuclease, C-terminal SAM fold ND449_13470 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND449_13475 PF01728 FtsJ-like methyltransferase ND449_13475 PF18125 RlmM ferredoxin-like domain ND449_13480 PF04241 Protein of unknown function (DUF423) ND449_13485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_13485 PF03466 LysR substrate binding domain ND449_13490 PF06004 Bacterial protein of unknown function (DUF903) ND449_13495 PF00266 Aminotransferase class-V ND449_13500 PF02657 Fe-S metabolism associated domain ND449_13505 PF00899 ThiF family ND449_13510 PF03562 MltA specific insert domain ND449_13510 PF06725 3D domain ND449_13530 PF01520 N-acetylmuramoyl-L-alanine amidase ND449_13530 PF11741 AMIN domain ND449_13535 PF00696 Amino acid kinase family ND449_13535 PF00583 Acetyltransferase (GNAT) family ND449_13540 PF13538 UvrD-like helicase C-terminal domain ND449_13545 PF13361 UvrD-like helicase C-terminal domain ND449_13545 PF12705 PD-(D/E)XK nuclease superfamily ND449_13545 PF00580 UvrD/REP helicase N-terminal domain ND449_13550 PF00675 Insulinase (Peptidase family M16) ND449_13550 PF05193 Peptidase M16 inactive domain ND449_13550 PF16187 Middle or third domain of peptidase_M16 ND449_13555 PF17946 RecC C-terminal domain ND449_13560 PF07963 Prokaryotic N-terminal methylation motif ND449_13560 PF12528 Type II secretion prepilin peptidase dependent protein C ND449_13575 PF07963 Prokaryotic N-terminal methylation motif ND449_13575 PF00114 Pilin (bacterial filament) ND449_13580 PF00303 Thymidylate synthase ND449_13585 PF01790 Prolipoprotein diacylglyceryl transferase ND449_13590 PF01590 GAF domain ND449_13590 PF05524 PEP-utilising enzyme, N-terminal ND449_13590 PF00391 PEP-utilising enzyme, mobile domain ND449_13590 PF02896 PEP-utilising enzyme, TIM barrel domain ND449_13595 PF00293 NUDIX domain ND449_13600 PF02976 DNA mismatch repair enzyme MutH ND449_13605 PF03741 Integral membrane protein TerC family ND449_13610 PF00248 Aldo/keto reductase family ND449_13615 PF07690 Major Facilitator Superfamily ND449_13620 PF13193 AMP-binding enzyme C-terminal domain ND449_13620 PF01553 Acyltransferase ND449_13620 PF00501 AMP-binding enzyme ND449_13630 PF00356 Bacterial regulatory proteins, lacI family ND449_13635 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND449_13635 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ND449_13640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_13640 PF03466 LysR substrate binding domain ND449_13645 PF03466 LysR substrate binding domain ND449_13645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_13685 PF07963 Prokaryotic N-terminal methylation motif ND449_13685 PF11612 Type II secretion system (T2SS), protein J ND449_13690 PF07963 Prokaryotic N-terminal methylation motif ND449_13690 PF02501 Type II secretion system (T2SS), protein I ND449_13700 PF07963 Prokaryotic N-terminal methylation motif ND449_13700 PF08334 Type II secretion system (T2SS), protein G ND449_13705 PF00482 Type II secretion system (T2SS), protein F ND449_13710 PF00437 Type II/IV secretion system protein ND449_13715 PF00263 Bacterial type II and III secretion system protein ND449_13715 PF03958 Bacterial type II/III secretion system short domain ND449_13740 PF00005 ABC transporter ND449_13745 PF02405 Permease MlaE ND449_13755 PF00152 tRNA synthetases class II (D, K and N) ND449_13755 PF01336 OB-fold nucleic acid binding domain ND449_13765 PF01368 DHH family ND449_13765 PF17768 RecJ OB domain ND449_13765 PF02272 DHHA1 domain ND449_13770 PF10411 Disulfide bond isomerase protein N-terminus ND449_13770 PF13098 Thioredoxin-like domain ND449_13775 PF02899 Phage integrase, N-terminal SAM-like domain ND449_13775 PF00589 Phage integrase family ND449_13780 PF00258 Flavodoxin ND449_13785 PF07254 Membrane-bound toxin component of toxin-antitoxin system ND449_13790 PF03937 Flavinator of succinate dehydrogenase ND449_13795 PF01571 Aminomethyltransferase folate-binding domain ND449_13800 PF03006 Haemolysin-III related ND449_13810 PF02347 Glycine cleavage system P-protein ND449_13815 PF01597 Glycine cleavage H-protein ND449_13820 PF01571 Aminomethyltransferase folate-binding domain ND449_13820 PF08669 Glycine cleavage T-protein C-terminal barrel domain ND449_13825 PF01494 FAD binding domain ND449_13830 PF01494 FAD binding domain ND449_13835 PF05195 Aminopeptidase P, N-terminal domain ND449_13835 PF00557 Metallopeptidase family M24 ND449_13840 PF03695 Uncharacterised protein family (UPF0149) ND449_13845 PF05164 Cell division protein ZapA ND449_13855 PF01812 5-formyltetrahydrofolate cyclo-ligase family ND449_13860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND449_13860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND449_13860 PF01842 ACT domain ND449_13865 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ND449_13870 PF03466 LysR substrate binding domain ND449_13870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_13875 PF04402 Protein of unknown function (DUF541) ND449_13880 PF01810 LysE type translocator ND449_13885 PF00924 Mechanosensitive ion channel ND449_13885 PF05552 Conserved TM helix ND449_13890 PF01116 Fructose-bisphosphate aldolase class-II ND449_13895 PF00162 Phosphoglycerate kinase ND449_13900 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND449_13900 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND449_13905 PF02779 Transketolase, pyrimidine binding domain ND449_13905 PF02780 Transketolase, C-terminal domain ND449_13905 PF00456 Transketolase, thiamine diphosphate binding domain ND449_13915 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND449_13915 PF17810 Arginine decarboxylase helical bundle domain ND449_13915 PF17944 Arginine decarboxylase C-terminal helical extension ND449_13920 PF02773 S-adenosylmethionine synthetase, C-terminal domain ND449_13920 PF00438 S-adenosylmethionine synthetase, N-terminal domain ND449_13920 PF02772 S-adenosylmethionine synthetase, central domain ND449_13930 PF04143 Sulphur transport ND449_13940 PF10263 SprT-like family ND449_13940 PF17283 SprT-like zinc ribbon domain ND449_13945 PF04231 Endonuclease I ND449_13950 PF04452 RNA methyltransferase ND449_13955 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ND449_13955 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ND449_13960 PF02622 Uncharacterized ACR, COG1678 ND449_13965 PF03652 Holliday junction resolvase ND449_13970 PF00795 Carbon-nitrogen hydrolase ND449_13975 PF04371 Porphyromonas-type peptidyl-arginine deiminase ND449_13980 PF00437 Type II/IV secretion system protein ND449_13985 PF01168 Alanine racemase, N-terminal domain ND449_13990 PF14748 Pyrroline-5-carboxylate reductase dimerisation ND449_13990 PF03807 NADP oxidoreductase coenzyme F420-dependent ND449_13995 PF02325 YGGT family ND449_14000 PF02594 Uncharacterised ACR, YggU family COG1872 ND449_14005 PF01725 Ham1 family ND449_14010 PF04055 Radical SAM superfamily ND449_14010 PF06969 HemN C-terminal domain ND449_14015 PF11101 Protein of unknown function (DUF2884) ND449_14020 PF04960 Glutaminase ND449_14025 PF04320 Protein with unknown function (DUF469) ND449_14030 PF02390 Putative methyltransferase ND449_14035 PF10576 Iron-sulfur binding domain of endonuclease III ND449_14035 PF00633 Helix-hairpin-helix motif ND449_14035 PF00730 HhH-GPD superfamily base excision DNA repair protein ND449_14035 PF14815 NUDIX domain ND449_14040 PF04362 Bacterial Fe(2+) trafficking ND449_14045 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ND449_14045 PF01464 Transglycosylase SLT domain ND449_14090 PF00294 pfkB family carbohydrate kinase ND449_14095 PF01228 Glycine radical ND449_14095 PF02901 Pyruvate formate lyase-like ND449_14100 PF00871 Acetokinase family ND449_14105 PF01490 Transmembrane amino acid transporter protein ND449_14110 PF00291 Pyridoxal-phosphate dependent enzyme ND449_14115 PF00501 AMP-binding enzyme ND449_14115 PF13193 AMP-binding enzyme C-terminal domain ND449_14115 PF00668 Condensation domain ND449_14115 PF00550 Phosphopantetheine attachment site ND449_14115 PF00975 Thioesterase domain ND449_14125 PF00857 Isochorismatase family ND449_14125 PF00550 Phosphopantetheine attachment site ND449_14130 PF00501 AMP-binding enzyme ND449_14130 PF13193 AMP-binding enzyme C-terminal domain ND449_14135 PF00425 chorismate binding enzyme ND449_14140 PF01497 Periplasmic binding protein ND449_14145 PF05977 Transmembrane secretion effector ND449_14150 PF01032 FecCD transport family ND449_14155 PF01032 FecCD transport family ND449_14160 PF00005 ABC transporter ND449_14170 PF00501 AMP-binding enzyme ND449_14170 PF13193 AMP-binding enzyme C-terminal domain ND449_14170 PF00668 Condensation domain ND449_14170 PF00550 Phosphopantetheine attachment site ND449_14170 PF00975 Thioesterase domain ND449_14175 PF03621 MbtH-like protein ND449_14180 PF11806 Domain of unknown function (DUF3327) ND449_14180 PF00756 Putative esterase ND449_14185 PF07715 TonB-dependent Receptor Plug Domain ND449_14185 PF00593 TonB dependent receptor ND449_14190 PF08501 Shikimate dehydrogenase substrate binding domain ND449_14215 PF04972 BON domain ND449_14215 PF00263 Bacterial type II and III secretion system protein ND449_14215 PF13629 Pilus formation protein N terminal region ND449_14235 PF00437 Type II/IV secretion system protein ND449_14275 PF02472 Biopolymer transport protein ExbD/TolR ND449_14280 PF01618 MotA/TolQ/ExbB proton channel family ND449_14285 PF01053 Cys/Met metabolism PLP-dependent enzyme ND449_14290 PF09335 SNARE associated Golgi protein ND449_14295 PF06719 AraC-type transcriptional regulator N-terminus ND449_14295 PF12833 Helix-turn-helix domain ND449_14300 PF00465 Iron-containing alcohol dehydrogenase ND449_14305 PF00248 Aldo/keto reductase family ND449_14310 PF11842 Domain of unknown function (DUF3362) ND449_14310 PF04055 Radical SAM superfamily ND449_14310 PF08497 Radical SAM N-terminal ND449_14315 PF07731 Multicopper oxidase ND449_14315 PF07732 Multicopper oxidase ND449_14320 PF01553 Acyltransferase ND449_14325 PF03989 DNA gyrase C-terminal domain, beta-propeller ND449_14325 PF00521 DNA gyrase/topoisomerase IV, subunit A ND449_14330 PF02525 Flavodoxin-like fold ND449_14335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_14335 PF03466 LysR substrate binding domain ND449_14340 PF00204 DNA gyrase B ND449_14340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_14340 PF01751 Toprim domain ND449_14340 PF00986 DNA gyrase B subunit, carboxyl terminus ND449_14345 PF05728 Uncharacterised protein family (UPF0227) ND449_14350 PF00149 Calcineurin-like phosphoesterase ND449_14355 PF06853 Protein of unknown function (DUF1249) ND449_14360 PF00293 NUDIX domain ND449_14365 PF02321 Outer membrane efflux protein ND449_14370 PF06693 Protein of unknown function (DUF1190) ND449_14375 PF03738 Glutathionylspermidine synthase preATP-grasp ND449_14380 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ND449_14385 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ND449_14390 PF04380 Membrane fusogenic activity ND449_14400 PF01467 Cytidylyltransferase-like ND449_14400 PF00294 pfkB family carbohydrate kinase ND449_14405 PF08335 GlnD PII-uridylyltransferase ND449_14405 PF03710 Glutamate-ammonia ligase adenylyltransferase ND449_14410 PF01928 CYTH domain ND449_14415 PF08239 Bacterial SH3 domain ND449_14420 PF01743 Poly A polymerase head domain ND449_14420 PF12627 Probable RNA and SrmB- binding site of polymerase A ND449_14420 PF01966 HD domain ND449_14425 PF02673 Bacitracin resistance protein BacA ND449_14430 PF02152 Dihydroneopterin aldolase ND449_14435 PF02660 Glycerol-3-phosphate acyltransferase ND449_14440 PF00814 Glycoprotease family ND449_14445 PF01165 Ribosomal protein S21 ND449_14450 PF10410 DnaB-helicase binding domain of primase ND449_14450 PF08275 DNA primase catalytic core, N-terminal domain ND449_14450 PF01807 CHC2 zinc finger ND449_14450 PF08278 DNA primase DnaG DnaB-binding ND449_14455 PF04546 Sigma-70, non-essential region ND449_14455 PF03979 Sigma-70 factor, region 1.1 ND449_14455 PF00140 Sigma-70 factor, region 1.2 ND449_14455 PF04542 Sigma-70 region 2 ND449_14455 PF04545 Sigma-70, region 4 ND449_14455 PF04539 Sigma-70 region 3 ND449_14480 PF00106 short chain dehydrogenase ND449_14505 PF08241 Methyltransferase domain ND449_14510 PF00535 Glycosyl transferase family 2 ND449_14545 PF13332 Hemagglutinin repeat ND449_14545 PF05860 haemagglutination activity domain ND449_14545 PF04829 Pre-toxin domain with VENN motif ND449_14545 PF13018 Extended Signal Peptide of Type V secretion system ND449_14550 PF08479 POTRA domain, ShlB-type ND449_14550 PF17287 POTRA domain ND449_14550 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND449_14555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND449_14555 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND449_14560 PF05175 Methyltransferase small domain ND449_14570 PF01863 Protein of unknown function DUF45 ND449_14575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND449_14580 PF03741 Integral membrane protein TerC family ND449_14585 PF00375 Sodium:dicarboxylate symporter family ND449_14590 PF10688 Bacterial inner membrane protein ND449_14595 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ND449_14595 PF08666 SAF domain ND449_14600 PF01232 Mannitol dehydrogenase Rossmann domain ND449_14600 PF08125 Mannitol dehydrogenase C-terminal domain ND449_14605 PF02614 Glucuronate isomerase ND449_14610 PF07690 Major Facilitator Superfamily ND449_14615 PF07729 FCD domain ND449_14615 PF00392 Bacterial regulatory proteins, gntR family ND449_14625 PF09335 SNARE associated Golgi protein ND449_14630 PF13721 SecD export protein N-terminal TM region ND449_14640 PF05957 Bacterial protein of unknown function (DUF883) ND449_14645 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ND449_14650 PF13997 YqjK-like protein ND449_14655 PF07681 DoxX ND449_14660 PF03466 LysR substrate binding domain ND449_14660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_14665 PF02678 Pirin ND449_14665 PF17954 Quercetinase C-terminal cupin domain ND449_14680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND449_14685 PF04348 LppC putative lipoprotein ND449_14690 PF02021 Uncharacterised protein family UPF0102 ND449_14695 PF13580 SIS domain ND449_14700 PF04972 BON domain ND449_14705 PF00912 Transglycosylase ND449_14715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_14715 PF00512 His Kinase A (phospho-acceptor) domain ND449_14715 PF18415 Histidine kinase receptor ArcB trans-membrane domain ND449_14715 PF01627 Hpt domain ND449_14715 PF00989 PAS fold ND449_14715 PF00072 Response regulator receiver domain ND449_14720 PF04055 Radical SAM superfamily ND449_14720 PF16199 Radical_SAM C-terminal domain ND449_14725 PF00310 Glutamine amidotransferases class-II ND449_14725 PF04898 Glutamate synthase central domain ND449_14725 PF01645 Conserved region in glutamate synthase ND449_14725 PF01493 GXGXG motif ND449_14730 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ND449_14730 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND449_14740 PF04386 Stringent starvation protein B ND449_14745 PF02798 Glutathione S-transferase, N-terminal domain ND449_14745 PF00043 Glutathione S-transferase, C-terminal domain ND449_14750 PF00380 Ribosomal protein S9/S16 ND449_14755 PF00572 Ribosomal protein L13 ND449_14760 PF03969 AFG1-like ATPase ND449_14765 PF06295 Protein of unknown function (DUF1043) ND449_14770 PF13180 PDZ domain ND449_14770 PF00595 PDZ domain ND449_14775 PF13180 PDZ domain ND449_14780 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND449_14785 PF01722 BolA-like protein ND449_14790 PF13466 STAS domain ND449_14795 PF05494 MlaC protein ND449_14800 PF02470 MlaD protein ND449_14805 PF02405 Permease MlaE ND449_14810 PF00005 ABC transporter ND449_14815 PF01699 Sodium/calcium exchanger protein ND449_14820 PF00571 CBS domain ND449_14820 PF01380 SIS domain ND449_14830 PF06835 Lipopolysaccharide-assembly, LptC-related ND449_14835 PF03968 OstA-like protein ND449_14840 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND449_14840 PF00005 ABC transporter ND449_14845 PF00309 Sigma-54 factor, Activator interacting domain (AID) ND449_14845 PF04963 Sigma-54 factor, core binding domain ND449_14845 PF04552 Sigma-54, DNA binding domain ND449_14850 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND449_14855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND449_14860 PF03668 P-loop ATPase protein family ND449_14865 PF00381 PTS HPr component phosphorylation site ND449_14870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND449_14870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND449_14875 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ND449_14875 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ND449_14880 PF01042 Endoribonuclease L-PSP ND449_14885 PF00128 Alpha amylase, catalytic domain ND449_14885 PF11941 Domain of unknown function (DUF3459) ND449_14890 PF00367 phosphotransferase system, EIIB ND449_14890 PF02378 Phosphotransferase system, EIIC ND449_14895 PF00356 Bacterial regulatory proteins, lacI family ND449_14900 PF00689 Cation transporting ATPase, C-terminus ND449_14900 PF00690 Cation transporter/ATPase, N-terminus ND449_14910 PF01272 Transcription elongation factor, GreA/GreB, C-term ND449_14910 PF14760 Rnk N-terminus ND449_14915 PF07361 Cytochrome b562 ND449_14920 PF01523 Putative modulator of DNA gyrase ND449_14925 PF04751 Protein of unknown function (DUF615) ND449_14930 PF01337 Barstar (barnase inhibitor) ND449_14935 PF00545 ribonuclease ND449_14940 PF00171 Aldehyde dehydrogenase family ND449_14945 PF04632 Fusaric acid resistance protein family ND449_14950 PF13533 Biotin-lipoyl like ND449_14955 PF07869 Protein of unknown function (DUF1656) ND449_14960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_14960 PF03466 LysR substrate binding domain ND449_14965 PF01523 Putative modulator of DNA gyrase ND449_14970 PF00795 Carbon-nitrogen hydrolase ND449_14975 PF13502 AsmA-like C-terminal region ND449_14975 PF13116 Protein of unknown function ND449_14980 PF00575 S1 RNA binding domain ND449_14980 PF10150 Ribonuclease E/G family ND449_14985 PF02545 Maf-like protein ND449_14990 PF04093 rod shape-determining protein MreD ND449_14995 PF04085 rod shape-determining protein MreC ND449_15005 PF00563 EAL domain ND449_15005 PF17157 Gammaproteobacterial periplasmic sensor domain ND449_15005 PF00990 Diguanylate cyclase, GGDEF domain ND449_15010 PF08240 Alcohol dehydrogenase GroES-like domain ND449_15010 PF00107 Zinc-binding dehydrogenase ND449_15015 PF00174 Oxidoreductase molybdopterin binding domain ND449_15020 PF01794 Ferric reductase like transmembrane component ND449_15025 PF01220 Dehydroquinase class II ND449_15030 PF00364 Biotin-requiring enzyme ND449_15035 PF02785 Biotin carboxylase C-terminal domain ND449_15035 PF00289 Biotin carboxylase, N-terminal domain ND449_15035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND449_15040 PF06196 Protein of unknown function (DUF997) ND449_15045 PF00474 Sodium:solute symporter family ND449_15055 PF01207 Dihydrouridine synthase (Dus) ND449_15060 PF02954 Bacterial regulatory protein, Fis family ND449_15070 PF03279 Bacterial lipid A biosynthesis acyltransferase ND449_15075 PF00484 Carbonic anhydrase ND449_15080 PF04172 LrgB-like family ND449_15085 PF03788 LrgA family ND449_15090 PF03466 LysR substrate binding domain ND449_15090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_15095 PF00999 Sodium/hydrogen exchanger family ND449_15100 PF00860 Permease family ND449_15110 PF00436 Single-strand binding protein family ND449_15115 PF17760 UvrA interaction domain ND449_15115 PF00005 ABC transporter ND449_15115 PF17755 UvrA DNA-binding domain ND449_15120 PF04237 YjbR ND449_15125 PF00155 Aminotransferase class I and II ND449_15130 PF00842 Alanine racemase, C-terminal domain ND449_15130 PF01168 Alanine racemase, N-terminal domain ND449_15135 PF00772 DnaB-like helicase N terminal domain ND449_15135 PF03796 DnaB-like helicase C terminal domain ND449_15140 PF08240 Alcohol dehydrogenase GroES-like domain ND449_15140 PF00107 Zinc-binding dehydrogenase ND449_15145 PF09583 Phage shock protein G (Phageshock_PspG) ND449_15150 PF01207 Dihydrouridine synthase (Dus) ND449_15155 PF01475 Ferric uptake regulator family ND449_15160 PF01726 LexA DNA binding domain ND449_15160 PF00717 Peptidase S24-like ND449_15165 PF01219 Prokaryotic diacylglycerol kinase ND449_15170 PF01553 Acyltransferase ND449_15175 PF01040 UbiA prenyltransferase family ND449_15180 PF04345 Chorismate lyase ND449_15185 PF07148 Maltose operon periplasmic protein precursor (MalM) ND449_15190 PF02264 LamB porin ND449_15195 PF00005 ABC transporter ND449_15195 PF17912 MalK OB fold domain ND449_15205 PF01547 Bacterial extracellular solute-binding protein ND449_15210 PF00528 Binding-protein-dependent transport system inner membrane component ND449_15210 PF14785 Maltose transport system permease protein MalF P2 domain ND449_15215 PF00528 Binding-protein-dependent transport system inner membrane component ND449_15220 PF06146 Phosphate-starvation-inducible E ND449_15225 PF00342 Phosphoglucose isomerase ND449_15230 PF00696 Amino acid kinase family ND449_15230 PF01842 ACT domain ND449_15235 PF17287 POTRA domain ND449_15235 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND449_15235 PF08479 POTRA domain, ShlB-type ND449_15240 PF13332 Hemagglutinin repeat ND449_15240 PF05860 haemagglutination activity domain ND449_15245 PF00872 Transposase, Mutator family ND449_15250 PF09134 Invasin, domain 3 ND449_15250 PF07979 Intimin C-type lectin domain ND449_15250 PF11924 Inverse autotransporter, beta-domain ND449_15250 PF02369 Bacterial Ig-like domain (group 1) ND449_15255 PF00872 Transposase, Mutator family ND449_15260 PF11924 Inverse autotransporter, beta-domain ND449_15260 PF09134 Invasin, domain 3 ND449_15260 PF07979 Intimin C-type lectin domain ND449_15260 PF02369 Bacterial Ig-like domain (group 1) ND449_15265 PF00872 Transposase, Mutator family ND449_15270 PF07979 Intimin C-type lectin domain ND449_15270 PF02369 Bacterial Ig-like domain (group 1) ND449_15270 PF11924 Inverse autotransporter, beta-domain ND449_15270 PF09134 Invasin, domain 3 ND449_15280 PF04488 Glycosyltransferase sugar-binding region containing DXD motif ND449_15290 PF00004 ATPase family associated with various cellular activities (AAA) ND449_15290 PF17862 AAA+ lid domain ND449_15290 PF01434 Peptidase family M41 ND449_15370 PF03466 LysR substrate binding domain ND449_15370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_15390 PF00809 Pterin binding enzyme ND449_15390 PF02965 Vitamin B12 dependent methionine synthase, activation domain ND449_15390 PF02607 B12 binding domain ND449_15390 PF02310 B12 binding domain ND449_15390 PF02574 Homocysteine S-methyltransferase ND449_15395 PF01614 Bacterial transcriptional regulator ND449_15395 PF09339 IclR helix-turn-helix domain ND449_15400 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ND449_15405 PF00463 Isocitrate lyase family ND449_15410 PF01274 Malate synthase ND449_15415 PF04204 Homoserine O-succinyltransferase ND449_15450 PF02142 MGS-like domain ND449_15450 PF01808 AICARFT/IMPCHase bienzyme ND449_15455 PF02844 Phosphoribosylglycinamide synthetase, N domain ND449_15455 PF02843 Phosphoribosylglycinamide synthetase, C domain ND449_15455 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ND449_15460 PF07356 Protein of unknown function (DUF1481) ND449_15465 PF00216 Bacterial DNA-binding protein ND449_15470 PF04222 Protein of unknown function (DUF416) ND449_15475 PF04493 Endonuclease V ND449_15480 PF01208 Uroporphyrinogen decarboxylase (URO-D) ND449_15485 PF00293 NUDIX domain ND449_15485 PF09297 NADH pyrophosphatase zinc ribbon domain ND449_15490 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ND449_15495 PF13667 ThiC-associated domain ND449_15495 PF01964 Radical SAM ThiC family ND449_15500 PF02581 Thiamine monophosphate synthase ND449_15505 PF00899 ThiF family ND449_15510 PF02597 ThiS family ND449_15515 PF05690 Thiazole biosynthesis protein ThiG ND449_15520 PF04055 Radical SAM superfamily ND449_15520 PF06968 Biotin and Thiamin Synthesis associated domain ND449_15525 PF00623 RNA polymerase Rpb1, domain 2 ND449_15525 PF04983 RNA polymerase Rpb1, domain 3 ND449_15525 PF05000 RNA polymerase Rpb1, domain 4 ND449_15525 PF04998 RNA polymerase Rpb1, domain 5 ND449_15525 PF04997 RNA polymerase Rpb1, domain 1 ND449_15530 PF04561 RNA polymerase Rpb2, domain 2 ND449_15530 PF04565 RNA polymerase Rpb2, domain 3 ND449_15530 PF04560 RNA polymerase Rpb2, domain 7 ND449_15530 PF00562 RNA polymerase Rpb2, domain 6 ND449_15530 PF10385 RNA polymerase beta subunit external 1 domain ND449_15530 PF04563 RNA polymerase beta subunit ND449_15535 PF16320 Ribosomal protein L7/L12 dimerisation domain ND449_15535 PF00542 Ribosomal protein L7/L12 C-terminal domain ND449_15540 PF00466 Ribosomal protein L10 ND449_15545 PF00687 Ribosomal protein L1p/L10e family ND449_15550 PF03946 Ribosomal protein L11, N-terminal domain ND449_15550 PF00298 Ribosomal protein L11, RNA binding domain ND449_15555 PF02357 Transcription termination factor nusG ND449_15555 PF00467 KOW motif ND449_15560 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ND449_15565 PF00009 Elongation factor Tu GTP binding domain ND449_15565 PF03143 Elongation factor Tu C-terminal domain ND449_15565 PF03144 Elongation factor Tu domain 2 ND449_15590 PF00485 Phosphoribulokinase / Uridine kinase family ND449_15595 PF02237 Biotin protein ligase C terminal domain ND449_15595 PF08279 HTH domain ND449_15595 PF03099 Biotin/lipoate A/B protein ligase family ND449_15600 PF01565 FAD binding domain ND449_15600 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ND449_15625 PF12724 Flavodoxin domain ND449_15630 PF02386 Cation transport protein ND449_15635 PF09186 Domain of unknown function (DUF1949) ND449_15635 PF01205 Uncharacterized protein family UPF0029 ND449_15640 PF00557 Metallopeptidase family M24 ND449_15645 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND449_15645 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND449_15645 PF00378 Enoyl-CoA hydratase/isomerase ND449_15650 PF02803 Thiolase, C-terminal domain ND449_15650 PF00108 Thiolase, N-terminal domain ND449_15655 PF00970 Oxidoreductase FAD-binding domain ND449_15655 PF00175 Oxidoreductase NAD-binding domain ND449_15660 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ND449_15670 PF02357 Transcription termination factor nusG ND449_15675 PF00490 Delta-aminolevulinic acid dehydratase ND449_15680 PF01026 TatD related DNase ND449_15685 PF00902 Sec-independent protein translocase protein (TatC) ND449_15695 PF02416 mttA/Hcf106 family ND449_15700 PF03109 ABC1 family ND449_15705 PF02036 SCP-2 sterol transfer family ND449_15710 PF01209 ubiE/COQ5 methyltransferase family ND449_15715 PF02646 RmuC family ND449_15720 PF09335 SNARE associated Golgi protein ND449_15725 PF13722 5TM C-terminal transporter carbon starvation CstA ND449_15725 PF02554 Carbon starvation protein CstA ND449_15735 PF01048 Phosphorylase superfamily ND449_15740 PF01738 Dienelactone hydrolase family ND449_15745 PF01717 Cobalamin-independent synthase, Catalytic domain ND449_15745 PF08267 Cobalamin-independent synthase, N-terminal domain ND449_15750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_15750 PF03466 LysR substrate binding domain ND449_15755 PF00892 EamA-like transporter family ND449_15765 PF03009 Glycerophosphoryl diester phosphodiesterase family ND449_15770 PF17912 MalK OB fold domain ND449_15770 PF00005 ABC transporter ND449_15775 PF00528 Binding-protein-dependent transport system inner membrane component ND449_15780 PF00528 Binding-protein-dependent transport system inner membrane component ND449_15785 PF13416 Bacterial extracellular solute-binding protein ND449_15820 PF00005 ABC transporter ND449_15825 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND449_15825 PF00005 ABC transporter ND449_15830 PF02653 Branched-chain amino acid transport system / permease component ND449_15830 PF11862 Domain of unknown function (DUF3382) ND449_15835 PF02653 Branched-chain amino acid transport system / permease component ND449_15840 PF13458 Periplasmic binding protein ND449_15845 PF12568 Acetyltransferase (GNAT) domain, PanZ ND449_15850 PF02595 Glycerate kinase family ND449_15855 PF02447 GntP family permease ND449_15860 PF05651 Putative sugar diacid recognition ND449_15860 PF17853 GGDEF-like domain ND449_15860 PF13556 PucR C-terminal helix-turn-helix domain ND449_15865 PF04542 Sigma-70 region 2 ND449_15865 PF00140 Sigma-70 factor, region 1.2 ND449_15865 PF04545 Sigma-70, region 4 ND449_15870 PF02687 FtsX-like permease family ND449_15870 PF18075 FtsX extracellular domain ND449_15875 PF00005 ABC transporter ND449_15880 PF00448 SRP54-type protein, GTPase domain ND449_15880 PF02881 SRP54-type protein, helical bundle domain ND449_15880 PF00448 SRP54-type protein, GTPase domain ND449_15880 PF02881 SRP54-type protein, helical bundle domain ND449_15890 PF06611 Protein of unknown function (DUF1145) ND449_15905 PF07947 YhhN family ND449_15910 PF00403 Heavy-metal-associated domain ND449_15915 PF01206 Sulfurtransferase TusA ND449_15920 PF02592 Putative vitamin uptake transporter ND449_15925 PF08786 DcrB ND449_15930 PF13183 4Fe-4S dicluster domain ND449_15930 PF02754 Cysteine-rich domain ND449_15935 PF00890 FAD binding domain ND449_15940 PF04324 BFD-like [2Fe-2S] binding domain ND449_15940 PF01266 FAD dependent oxidoreductase ND449_15950 PF07690 Major Facilitator Superfamily ND449_15955 PF03009 Glycerophosphoryl diester phosphodiesterase family ND449_15965 PF12146 Serine aminopeptidase, S33 ND449_15970 PF01810 LysE type translocator ND449_15975 PF00270 DEAD/DEAH box helicase ND449_15975 PF00570 HRDC domain ND449_15975 PF16124 RecQ zinc-binding ND449_15975 PF09382 RQC domain ND449_15975 PF00271 Helicase conserved C-terminal domain ND449_15980 PF02253 Phospholipase A1 ND449_15985 PF03061 Thioesterase superfamily ND449_15990 PF00892 EamA-like transporter family ND449_15995 PF01544 CorA-like Mg2+ transporter protein ND449_16005 PF09370 Phosphoenolpyruvate hydrolase-like ND449_16020 PF13361 UvrD-like helicase C-terminal domain ND449_16020 PF00580 UvrD/REP helicase N-terminal domain ND449_16025 PF13419 Haloacid dehalogenase-like hydrolase ND449_16030 PF02899 Phage integrase, N-terminal SAM-like domain ND449_16030 PF00589 Phage integrase family ND449_16035 PF04340 Protein of unknown function, DUF484 ND449_16040 PF01678 Diaminopimelate epimerase ND449_16045 PF13627 Prokaryotic lipoprotein-attachment site ND449_16050 PF01491 Frataxin-like domain ND449_16055 PF01295 Adenylate cyclase, class-I ND449_16055 PF12633 Adenylate cyclase NT domain ND449_16060 PF03900 Porphobilinogen deaminase, C-terminal domain ND449_16060 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ND449_16065 PF02602 Uroporphyrinogen-III synthase HemD ND449_16070 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ND449_16075 PF07719 Tetratricopeptide repeat ND449_16075 PF07219 HemY protein N-terminus ND449_16105 PF00324 Amino acid permease ND449_16110 PF03808 Glycosyl transferase WecB/TagA/CpsF family ND449_16115 PF06899 WzyE protein, O-antigen assembly polymerase ND449_16120 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ND449_16125 PF01943 Polysaccharide biosynthesis protein ND449_16130 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND449_16140 PF00483 Nucleotidyl transferase ND449_16145 PF16363 GDP-mannose 4,6 dehydratase ND449_16150 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND449_16150 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND449_16150 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND449_16155 PF02350 UDP-N-acetylglucosamine 2-epimerase ND449_16160 PF02706 Chain length determinant protein ND449_16165 PF00953 Glycosyl transferase family 4 ND449_16170 PF07497 Rho termination factor, RNA-binding domain ND449_16170 PF07498 Rho termination factor, N-terminal domain ND449_16170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND449_16175 PF00085 Thioredoxin ND449_16180 PF00271 Helicase conserved C-terminal domain ND449_16180 PF00270 DEAD/DEAH box helicase ND449_16185 PF02541 Ppx/GppA phosphatase family ND449_16190 PF13361 UvrD-like helicase C-terminal domain ND449_16190 PF00580 UvrD/REP helicase N-terminal domain ND449_16200 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ND449_16200 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ND449_16205 PF03466 LysR substrate binding domain ND449_16205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_16210 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND449_16210 PF18416 N-acetylglucosamine binding protein domain 2 ND449_16215 PF00291 Pyridoxal-phosphate dependent enzyme ND449_16215 PF00585 C-terminal regulatory domain of Threonine dehydratase ND449_16220 PF00920 Dehydratase family ND449_16225 PF01063 Amino-transferase class IV ND449_16235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND449_16235 PF00205 Thiamine pyrophosphate enzyme, central domain ND449_16235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND449_16240 PF08046 IlvGEDA operon leader peptide ND449_16245 PF13335 Magnesium chelatase, subunit ChlI C-terminal ND449_16245 PF01078 Magnesium chelatase, subunit ChlI ND449_16250 PF04219 Protein of unknown function, DUF ND449_16255 PF03466 LysR substrate binding domain ND449_16255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_16305 PF01177 Asp/Glu/Hydantoin racemase ND449_16310 PF00593 TonB dependent receptor ND449_16310 PF07715 TonB-dependent Receptor Plug Domain ND449_16315 PF05958 tRNA (Uracil-5-)-methyltransferase ND449_16320 PF07226 Protein of unknown function (DUF1422) ND449_16325 PF00440 Bacterial regulatory proteins, tetR family ND449_16330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND449_16330 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND449_16335 PF03466 LysR substrate binding domain ND449_16335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_16340 PF08534 Redoxin ND449_16340 PF00462 Glutaredoxin ND449_16345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND449_16345 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND449_16365 PF00529 HlyD membrane-fusion protein of T1SS ND449_16370 PF00664 ABC transporter transmembrane region ND449_16370 PF00005 ABC transporter ND449_16380 PF00593 TonB dependent receptor ND449_16380 PF07715 TonB-dependent Receptor Plug Domain ND449_16385 PF14698 Argininosuccinate lyase C-terminal ND449_16385 PF00206 Lyase ND449_16390 PF00764 Arginosuccinate synthase ND449_16395 PF00696 Amino acid kinase family ND449_16400 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND449_16400 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND449_16405 PF07687 Peptidase dimerisation domain ND449_16405 PF01546 Peptidase family M20/M25/M40 ND449_16410 PF00311 Phosphoenolpyruvate carboxylase ND449_16420 PF02219 Methylenetetrahydrofolate reductase ND449_16440 PF00742 Homoserine dehydrogenase ND449_16440 PF00696 Amino acid kinase family ND449_16440 PF03447 Homoserine dehydrogenase, NAD binding domain ND449_16445 PF01053 Cys/Met metabolism PLP-dependent enzyme ND449_16450 PF01340 Met Apo-repressor, MetJ ND449_16455 PF01197 Ribosomal protein L31 ND449_16460 PF00271 Helicase conserved C-terminal domain ND449_16460 PF00270 DEAD/DEAH box helicase ND449_16460 PF17764 3′ DNA-binding domain (3′BD) ND449_16460 PF18074 Primosomal protein N C-terminal domain ND449_16460 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ND449_16465 PF00356 Bacterial regulatory proteins, lacI family ND449_16470 PF05036 Sporulation related domain ND449_16475 PF00227 Proteasome subunit ND449_16480 PF10431 C-terminal, D2-small domain, of ClpB protein ND449_16480 PF07724 AAA domain (Cdc48 subfamily) ND449_16480 PF00004 ATPase family associated with various cellular activities (AAA) ND449_16485 PF01040 UbiA prenyltransferase family ND449_16490 PF03737 Aldolase/RraA ND449_16495 PF06005 Cell division protein ZapB ND449_16500 PF00230 Major intrinsic protein ND449_16505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND449_16505 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND449_16510 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ND449_16515 PF07690 Major Facilitator Superfamily ND449_16520 PF00175 Oxidoreductase NAD-binding domain ND449_16520 PF00970 Oxidoreductase FAD-binding domain ND449_16525 PF05656 Protein of unknown function (DUF805) ND449_16530 PF07305 Protein of unknown function (DUF1454) ND449_16535 PF00121 Triosephosphate isomerase ND449_16545 PF00365 Phosphofructokinase ND449_16550 PF01545 Cation efflux family ND449_16550 PF16916 Dimerisation domain of Zinc Transporter ND449_16555 PF07813 LTXXQ motif family protein ND449_16560 PF00072 Response regulator receiver domain ND449_16560 PF00486 Transcriptional regulatory protein, C terminal ND449_16565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_16565 PF16527 Two-component sensor protein CpxA, periplasmic domain ND449_16565 PF00512 His Kinase A (phospho-acceptor) domain ND449_16565 PF00672 HAMP domain ND449_16570 PF00588 SpoU rRNA Methylase family ND449_16575 PF00132 Bacterial transferase hexapeptide (six repeats) ND449_16575 PF06426 Serine acetyltransferase, N-terminal ND449_16580 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ND449_16580 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ND449_16585 PF02556 Preprotein translocase subunit SecB ND449_16590 PF00462 Glutaredoxin ND449_16595 PF00581 Rhodanese-like domain ND449_16600 PF01676 Metalloenzyme superfamily ND449_16600 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ND449_16605 PF01551 Peptidase family M23 ND449_16610 PF04748 Divergent polysaccharide deacetylase ND449_16615 PF00107 Zinc-binding dehydrogenase ND449_16615 PF08240 Alcohol dehydrogenase GroES-like domain ND449_16620 PF00155 Aminotransferase class I and II ND449_16625 PF01370 NAD dependent epimerase/dehydratase family ND449_16630 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND449_16635 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND449_16640 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ND449_16645 PF00535 Glycosyl transferase family 2 ND449_16650 PF01467 Cytidylyltransferase-like ND449_16655 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ND449_16655 PF06827 Zinc finger found in FPG and IleRS ND449_16655 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ND449_16660 PF00471 Ribosomal protein L33 ND449_16665 PF00830 Ribosomal L28 family ND449_16670 PF04002 RadC-like JAB domain ND449_16675 PF04127 DNA / pantothenate metabolism flavoprotein ND449_16675 PF02441 Flavoprotein ND449_16680 PF00692 dUTPase ND449_16685 PF00440 Bacterial regulatory proteins, tetR family ND449_16690 PF00156 Phosphoribosyl transferase domain ND449_16695 PF01138 3' exoribonuclease family, domain 1 ND449_16695 PF03725 3' exoribonuclease family, domain 2 ND449_16700 PF03755 YicC-like family, N-terminal region ND449_16700 PF08340 Domain of unknown function (DUF1732) ND449_16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND449_16710 PF03466 LysR substrate binding domain ND449_16715 PF13426 PAS domain ND449_16715 PF00990 Diguanylate cyclase, GGDEF domain ND449_16715 PF00563 EAL domain ND449_16720 PF00378 Enoyl-CoA hydratase/isomerase ND449_16725 PF01773 Na+ dependent nucleoside transporter N-terminus ND449_16725 PF07662 Na+ dependent nucleoside transporter C-terminus ND449_16725 PF07670 Nucleoside recognition ND449_16735 PF03458 UPF0126 domain ND449_16740 PF01653 NAD-dependent DNA ligase adenylation domain ND449_16740 PF03120 NAD-dependent DNA ligase OB-fold domain ND449_16745 PF00625 Guanylate kinase ND449_16750 PF01192 RNA polymerase Rpb6 ND449_16755 PF02824 TGS domain ND449_16755 PF04607 Region found in RelA / SpoT proteins ND449_16755 PF13291 ACT domain ND449_16760 PF00588 SpoU rRNA Methylase family ND449_16760 PF12105 SpoU, rRNA methylase, C-terminal ND449_16765 PF17191 RecG wedge domain ND449_16765 PF00271 Helicase conserved C-terminal domain ND449_16765 PF00270 DEAD/DEAH box helicase ND449_16770 PF03616 Sodium/glutamate symporter ND449_16775 PF00860 Permease family ND449_16780 PF05170 AsmA family ND449_16785 PF09500 Putative thioesterase (yiiD_Cterm) ND449_16785 PF00583 Acetyltransferase (GNAT) family ND449_16790 PF02580 D-Tyr-tRNA(Tyr) deacylase ND449_16795 PF03631 Virulence factor BrkB ND449_16800 PF13419 Haloacid dehalogenase-like hydrolase ND449_16805 PF03144 Elongation factor Tu domain 2 ND449_16805 PF00679 Elongation factor G C-terminus ND449_16805 PF00009 Elongation factor Tu GTP binding domain ND449_16810 PF03951 Glutamine synthetase, beta-Grasp domain ND449_16810 PF00120 Glutamine synthetase, catalytic domain ND449_16815 PF00512 His Kinase A (phospho-acceptor) domain ND449_16815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND449_16815 PF00989 PAS fold ND449_16820 PF02954 Bacterial regulatory protein, Fis family ND449_16820 PF00072 Response regulator receiver domain ND449_16820 PF00158 Sigma-54 interaction domain ND449_16825 PF06969 HemN C-terminal domain ND449_16825 PF04055 Radical SAM superfamily ND449_16830 PF04220 Der GTPase activator (YihI) ND449_16835 PF01926 50S ribosome-binding GTPase ND449_16840 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND449_16840 PF00476 DNA polymerase family A ND449_16840 PF01612 3'-5' exonuclease ND449_16840 PF01367 5'-3' exonuclease, C-terminal SAM fold ND449_16845 PF01323 DSBA-like thioredoxin domain ND449_16850 PF01636 Phosphotransferase enzyme family ND449_16855 PF06288 Protein of unknown function (DUF1040) ND449_16860 PF12804 MobA-like NTP transferase domain ND449_16865 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ND449_16890 PF00392 Bacterial regulatory proteins, gntR family ND449_16890 PF07729 FCD domain ND449_16895 PF00356 Bacterial regulatory proteins, lacI family ND449_16900 PF00294 pfkB family carbohydrate kinase ND449_16905 PF13407 Periplasmic binding protein domain ND449_16910 PF02653 Branched-chain amino acid transport system / permease component ND449_16915 PF00005 ABC transporter ND449_16920 PF05025 RbsD / FucU transport protein family ND449_16925 PF02705 K+ potassium transporter ND449_16930 PF17868 AAA lid domain ND449_16930 PF07728 AAA domain (dynein-related subfamily) ND449_16930 PF12592 Protein of unknown function (DUF3763) ND449_16935 PF05762 VWA domain containing CoxE-like protein ND449_16945 PF03590 Aspartate-ammonia ligase ND449_16950 PF01037 Lrp/AsnC ligand binding domain ND449_16955 PF00258 Flavodoxin ND449_16960 PF01134 Glucose inhibited division protein A ND449_16960 PF13932 GidA associated domain ND449_16965 PF02527 rRNA small subunit methyltransferase G ND449_16970 PF03899 ATP synthase I chain ND449_16975 PF00119 ATP synthase A chain ND449_16980 PF00137 ATP synthase subunit C ND449_16985 PF00430 ATP synthase B/B' CF(0) ND449_16990 PF00213 ATP synthase delta (OSCP) subunit ND449_16995 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND449_16995 PF00306 ATP synthase alpha/beta chain, C terminal domain ND449_16995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND449_17000 PF00231 ATP synthase ND449_17005 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND449_17005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND449_17010 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ND449_17010 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ND449_17015 PF12804 MobA-like NTP transferase domain ND449_17015 PF00132 Bacterial transferase hexapeptide (six repeats) ND449_17020 PF01380 SIS domain ND449_17025 PF12849 PBP superfamily domain ND449_17030 PF00528 Binding-protein-dependent transport system inner membrane component ND449_17035 PF00528 Binding-protein-dependent transport system inner membrane component ND449_17040 PF00005 ABC transporter ND449_17045 PF01895 PhoU domain ND449_17050 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND449_17055 PF00528 Binding-protein-dependent transport system inner membrane component ND449_17060 PF00528 Binding-protein-dependent transport system inner membrane component ND449_17065 PF00860 Permease family ND449_17070 PF02203 Tar ligand binding domain homologue ND449_17070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND449_17070 PF00672 HAMP domain ND449_17080 PF02753 Pili assembly chaperone PapD, C-terminal domain ND449_17080 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND449_17085 PF00577 Outer membrane usher protein ND449_17085 PF13953 PapC C-terminal domain ND449_17085 PF13954 PapC N-terminal domain ND449_17095 PF10396 GTP-binding protein TrmE N-terminus ND449_17095 PF12631 MnmE helical domain ND449_17095 PF01926 50S ribosome-binding GTPase ND449_17100 PF14849 YidC periplasmic domain ND449_17100 PF02096 60Kd inner membrane protein ND449_17105 PF01809 Putative membrane protein insertion efficiency factor ND449_17110 PF00825 Ribonuclease P ND449_17115 PF00468 Ribosomal protein L34 ND449_17145 PF00239 Resolvase, N terminal domain ND449_17145 PF02796 Helix-turn-helix domain of resolvase ND449_17175 PF00817 impB/mucB/samB family ND449_17175 PF11799 impB/mucB/samB family C-terminal domain ND449_17175 PF13438 Domain of unknown function (DUF4113) ND449_17180 PF13476 AAA domain ND449_17210 PF00817 impB/mucB/samB family ND449_17210 PF13438 Domain of unknown function (DUF4113) ND449_17210 PF11798 IMS family HHH motif ND449_17210 PF11799 impB/mucB/samB family C-terminal domain ND449_17215 PF00717 Peptidase S24-like ND449_17225 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB ND449_17230 PF01381 Helix-turn-helix ND449_17240 PF06406 StbA protein ND449_17260 PF06924 Protein of unknown function (DUF1281) ND449_17290 PF02195 ParB-like nuclease domain ND449_17300 PF06952 PsiA protein ND449_17330 PF06067 Domain of unknown function (DUF932) ND449_17350 PF03432 Relaxase/Mobilisation nuclease domain ND449_17350 PF18821 Large polyvalent protein-associated domain 7 ND449_17360 PF13091 PLD-like domain ND449_17460 PF00437 Type II/IV secretion system protein ND449_17480 PF04917 Bacterial shufflon protein, N-terminal constant region ND449_17505 PF00437 Type II/IV secretion system protein ND449_17605 PF00437 Type II/IV secretion system protein ND449_17620 PF01464 Transglycosylase SLT domain ND449_17630 PF04917 Bacterial shufflon protein, N-terminal constant region ND449_17645 PF00437 Type II/IV secretion system protein ND449_17655 PF08401 Domain of unknown function (DUF1738) ND449_17655 PF18818 Metallopeptidase superfamily domain ND449_17655 PF13362 Toprim domain ND449_17760 PF18821 Large polyvalent protein-associated domain 7 ND449_17760 PF03432 Relaxase/Mobilisation nuclease domain ND449_17785 PF01381 Helix-turn-helix ND449_17850 PF06406 StbA protein ND449_17855 PF13614 AAA domain ND449_17865 PF02796 Helix-turn-helix domain of resolvase ND449_17865 PF00239 Resolvase, N terminal domain ND449_17880 PF13610 DDE domain ND449_17885 PF02796 Helix-turn-helix domain of resolvase ND449_17885 PF00239 Resolvase, N terminal domain ND449_17890 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ND449_17895 PF13610 DDE domain ND449_17910 PF00756 Putative esterase ND449_17920 PF00107 Zinc-binding dehydrogenase ND449_17920 PF08240 Alcohol dehydrogenase GroES-like domain ND449_17925 PF02583 Metal-sensitive transcriptional repressor ND449_17930 PF00465 Iron-containing alcohol dehydrogenase ND449_17950 PF02796 Helix-turn-helix domain of resolvase ND449_17950 PF00239 Resolvase, N terminal domain