locus-tag class description ND443_00005 PF00308 Bacterial dnaA protein ND443_00005 PF08299 Bacterial dnaA protein helix-turn-helix ND443_00005 PF11638 DnaA N-terminal domain ND443_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ND443_00010 PF02767 DNA polymerase III beta subunit, central domain ND443_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ND443_00015 PF02463 RecF/RecN/SMC N terminal domain ND443_00020 PF01751 Toprim domain ND443_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ND443_00020 PF00204 DNA gyrase B ND443_00020 PF18053 DNA gyrase B subunit insert domain ND443_00030 PF12566 Protein of unknown function (DUF3748) ND443_00030 PF07676 WD40-like Beta Propeller Repeat ND443_00035 PF07119 Protein of unknown function (DUF1375) ND443_00040 PF00011 Hsp20/alpha crystallin family ND443_00045 PF00011 Hsp20/alpha crystallin family ND443_00050 PF02080 TrkA-C domain ND443_00050 PF06826 Predicted Permease Membrane Region ND443_00055 PF00155 Aminotransferase class I and II ND443_00060 PF13488 Glycine zipper ND443_00060 PF00691 OmpA family ND443_00080 PF03352 Methyladenine glycosylase ND443_00090 PF02091 Glycyl-tRNA synthetase alpha subunit ND443_00095 PF05746 DALR anticodon binding domain ND443_00095 PF02092 Glycyl-tRNA synthetase beta subunit ND443_00100 PF11254 Protein of unknown function (DUF3053) ND443_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND443_00130 PF02378 Phosphotransferase system, EIIC ND443_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND443_00135 PF01232 Mannitol dehydrogenase Rossmann domain ND443_00135 PF08125 Mannitol dehydrogenase C-terminal domain ND443_00140 PF05068 Mannitol repressor ND443_00145 PF10928 Protein of unknown function (DUF2810) ND443_00150 PF03473 MOSC domain ND443_00150 PF03475 3-alpha domain ND443_00155 PF00672 HAMP domain ND443_00155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND443_00155 PF02203 Tar ligand binding domain homologue ND443_00160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND443_00160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND443_00165 PF02634 FdhD/NarQ family ND443_00175 PF13247 4Fe-4S dicluster domain ND443_00175 PF09163 Formate dehydrogenase N, transmembrane ND443_00180 PF01292 Prokaryotic cytochrome b561 ND443_00185 PF04216 Protein involved in formate dehydrogenase formation ND443_00190 PF03841 L-seryl-tRNA selenium transferase ND443_00190 PF12390 Selenocysteine synthase N terminal ND443_00195 PF09107 Elongation factor SelB, winged helix ND443_00195 PF09106 Elongation factor SelB, winged helix ND443_00195 PF03144 Elongation factor Tu domain 2 ND443_00195 PF00009 Elongation factor Tu GTP binding domain ND443_00200 PF01427 D-ala-D-ala dipeptidase ND443_00205 PF07690 Major Facilitator Superfamily ND443_00210 PF01757 Acyltransferase family ND443_00220 PF14659 Phage integrase, N-terminal SAM-like domain ND443_00220 PF13356 Arm DNA-binding domain ND443_00220 PF00589 Phage integrase family ND443_00230 PF04606 Ogr/Delta-like zinc finger ND443_00255 PF01175 Urocanase Rossmann-like domain ND443_00255 PF17392 Urocanase C-terminal domain ND443_00255 PF17391 Urocanase N-terminal domain ND443_00260 PF00221 Aromatic amino acid lyase ND443_00265 PF00324 Amino acid permease ND443_00275 PF12146 Serine aminopeptidase, S33 ND443_00280 PF08019 Phosphoethanolamine transferase EptA/EptB ND443_00280 PF00884 Sulfatase ND443_00285 PF00196 Bacterial regulatory proteins, luxR family ND443_00285 PF00072 Response regulator receiver domain ND443_00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_00290 PF05231 MASE1 ND443_00290 PF07730 Histidine kinase ND443_00295 PF07690 Major Facilitator Superfamily ND443_00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND443_00310 PF00528 Binding-protein-dependent transport system inner membrane component ND443_00315 PF00528 Binding-protein-dependent transport system inner membrane component ND443_00315 PF12911 N-terminal TM domain of oligopeptide transport permease C ND443_00320 PF00005 ABC transporter ND443_00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND443_00325 PF00005 ABC transporter ND443_00325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND443_00330 PF11658 Cellulose biosynthesis protein BcsG ND443_00335 PF11120 Cellulose biosynthesis protein BcsF ND443_00340 PF10995 Cellulose biosynthesis GIL ND443_00350 PF06564 Cellulose biosynthesis protein BcsQ ND443_00355 PF00535 Glycosyl transferase family 2 ND443_00355 PF07238 PilZ domain ND443_00355 PF03552 Cellulose synthase ND443_00360 PF03170 Bacterial cellulose synthase subunit ND443_00365 PF01270 Glycosyl hydrolases family 8 ND443_00370 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ND443_00375 PF00563 EAL domain ND443_00375 PF00990 Diguanylate cyclase, GGDEF domain ND443_00375 PF00672 HAMP domain ND443_00375 PF17154 Gammaproteobacterial periplasmic sensor domain ND443_00380 PF00375 Sodium:dicarboxylate symporter family ND443_00385 PF00675 Insulinase (Peptidase family M16) ND443_00385 PF05193 Peptidase M16 inactive domain ND443_00390 PF00294 pfkB family carbohydrate kinase ND443_00395 PF01361 Tautomerase enzyme ND443_00400 PF00563 EAL domain ND443_00405 PF02611 CDP-diacylglycerol pyrophosphatase ND443_00410 PF03631 Virulence factor BrkB ND443_00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_00415 PF03466 LysR substrate binding domain ND443_00420 PF00375 Sodium:dicarboxylate symporter family ND443_00425 PF01053 Cys/Met metabolism PLP-dependent enzyme ND443_00430 PF11924 Inverse autotransporter, beta-domain ND443_00430 PF07979 Intimin C-type lectin domain ND443_00430 PF09134 Invasin, domain 3 ND443_00430 PF02369 Bacterial Ig-like domain (group 1) ND443_00435 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND443_00435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND443_00440 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ND443_00445 PF01432 Peptidase family M3 ND443_00450 PF04445 Putative SAM-dependent methyltransferase ND443_00455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ND443_00455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ND443_00460 PF00582 Universal stress protein family ND443_00465 PF10625 Universal stress protein B (UspB) ND443_00470 PF01384 Phosphate transporter family ND443_00480 PF01810 LysE type translocator ND443_00485 PF00583 Acetyltransferase (GNAT) family ND443_00495 PF02678 Pirin ND443_00495 PF17954 Quercetinase C-terminal cupin domain ND443_00500 PF00356 Bacterial regulatory proteins, lacI family ND443_00500 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND443_00505 PF02447 GntP family permease ND443_00510 PF01202 Shikimate kinase ND443_00515 PF01914 MarC family integral membrane protein ND443_00520 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND443_00520 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND443_00525 PF07694 5TMR of 5TMR-LYT ND443_00525 PF06580 Histidine kinase ND443_00530 PF00128 Alpha amylase, catalytic domain ND443_00530 PF02806 Alpha amylase, C-terminal all-beta domain ND443_00530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND443_00535 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND443_00535 PF18390 Glycogen debranching enzyme C-terminal domain ND443_00535 PF00128 Alpha amylase, catalytic domain ND443_00540 PF00483 Nucleotidyl transferase ND443_00545 PF00534 Glycosyl transferases group 1 ND443_00545 PF08323 Starch synthase catalytic domain ND443_00550 PF00343 Carbohydrate phosphorylase ND443_00555 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ND443_00555 PF01266 FAD dependent oxidoreductase ND443_00560 PF00455 DeoR C terminal sensor domain ND443_00560 PF08220 DeoR-like helix-turn-helix domain ND443_00565 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ND443_00565 PF01694 Rhomboid family ND443_00570 PF00581 Rhodanese-like domain ND443_00575 PF00196 Bacterial regulatory proteins, luxR family ND443_00575 PF17874 MalT-like TPR region ND443_00580 PF00343 Carbohydrate phosphorylase ND443_00585 PF02446 4-alpha-glucanotransferase ND443_00590 PF01106 NifU-like domain ND443_00590 PF01521 Iron-sulphur cluster biosynthesis ND443_00595 PF00156 Phosphoribosyl transferase domain ND443_00600 PF00561 alpha/beta hydrolase fold ND443_00610 PF09012 FeoC like transcriptional regulator ND443_00615 PF02421 Ferrous iron transport protein B ND443_00615 PF07670 Nucleoside recognition ND443_00615 PF07664 Ferrous iron transport protein B C terminus ND443_00615 PF17910 FeoB cytosolic helical domain ND443_00620 PF04023 FeoA domain ND443_00625 PF17674 HHH domain ND443_00625 PF00575 S1 RNA binding domain ND443_00625 PF16921 Tex protein YqgF-like domain ND443_00625 PF09371 Tex-like protein N-terminal domain ND443_00650 PF03449 Transcription elongation factor, N-terminal ND443_00650 PF01272 Transcription elongation factor, GreA/GreB, C-term ND443_00655 PF00072 Response regulator receiver domain ND443_00655 PF00486 Transcriptional regulatory protein, C terminal ND443_00660 PF00672 HAMP domain ND443_00660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_00660 PF00512 His Kinase A (phospho-acceptor) domain ND443_00665 PF01293 Phosphoenolpyruvate carboxykinase ND443_00670 PF01430 Hsp33 protein ND443_00675 PF01479 S4 domain ND443_00680 PF13419 Haloacid dehalogenase-like hydrolase ND443_00685 PF07095 Intracellular growth attenuator protein IgaA ND443_00690 PF00293 NUDIX domain ND443_00695 PF00905 Penicillin binding protein transpeptidase domain ND443_00695 PF00912 Transglycosylase ND443_00695 PF17092 Penicillin-binding protein OB-like domain ND443_00720 PF03958 Bacterial type II/III secretion system short domain ND443_00720 PF00263 Bacterial type II and III secretion system protein ND443_00725 PF01202 Shikimate kinase ND443_00730 PF01761 3-dehydroquinate synthase ND443_00735 PF05036 Sporulation related domain ND443_00740 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND443_00745 PF00834 Ribulose-phosphate 3 epimerase family ND443_00750 PF13419 Haloacid dehalogenase-like hydrolase ND443_00755 PF00579 tRNA synthetases class I (W and Y) ND443_00760 PF14824 Sirohaem biosynthesis protein central ND443_00760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND443_00760 PF10414 Sirohaem synthase dimerisation region ND443_00765 PF01226 Formate/nitrite transporter ND443_00770 PF13806 Rieske-like [2Fe-2S] domain ND443_00775 PF04324 BFD-like [2Fe-2S] binding domain ND443_00775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND443_00775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND443_00775 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND443_00775 PF18267 Rubredoxin NAD+ reductase C-terminal domain ND443_00780 PF07969 Amidohydrolase family ND443_00785 PF07690 Major Facilitator Superfamily ND443_00800 PF00356 Bacterial regulatory proteins, lacI family ND443_00805 PF11975 Family 4 glycosyl hydrolase C-terminal domain ND443_00805 PF02056 Family 4 glycosyl hydrolase ND443_00810 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND443_00815 PF00117 Glutamine amidotransferase class-I ND443_00820 PF00202 Aminotransferase class-III ND443_00825 PF12805 FUSC-like inner membrane protein yccS ND443_00830 PF00027 Cyclic nucleotide-binding domain ND443_00830 PF13545 Crp-like helix-turn-helix domain ND443_00835 PF02566 OsmC-like protein ND443_00855 PF00156 Phosphoribosyl transferase domain ND443_00860 PF00291 Pyridoxal-phosphate dependent enzyme ND443_00865 PF00485 Phosphoribulokinase / Uridine kinase family ND443_00870 PF06794 Uncharacterised protein family (UPF0270) ND443_00875 PF00561 alpha/beta hydrolase fold ND443_00880 PF01810 LysE type translocator ND443_00885 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND443_00890 PF00535 Glycosyl transferase family 2 ND443_00895 PF00005 ABC transporter ND443_00895 PF12848 ABC transporter ND443_00900 PF02525 Flavodoxin-like fold ND443_00905 PF00999 Sodium/hydrogen exchanger family ND443_00905 PF02254 TrkA-N domain ND443_00910 PF09526 Probable metal-binding protein (DUF2387) ND443_00915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND443_00920 PF04102 SlyX ND443_00925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND443_00925 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND443_00930 PF13309 HTH domain ND443_00930 PF08348 YheO-like PAS domain ND443_00935 PF02635 DsrE/DsrF-like family ND443_00940 PF02635 DsrE/DsrF-like family ND443_00945 PF04077 DsrH like protein ND443_00950 PF00164 Ribosomal protein S12/S23 ND443_00955 PF00177 Ribosomal protein S7p/S5e ND443_00960 PF14492 Elongation Factor G, domain II ND443_00960 PF03764 Elongation factor G, domain IV ND443_00960 PF03144 Elongation factor Tu domain 2 ND443_00960 PF00679 Elongation factor G C-terminus ND443_00960 PF00009 Elongation factor Tu GTP binding domain ND443_00965 PF00009 Elongation factor Tu GTP binding domain ND443_00965 PF03144 Elongation factor Tu domain 2 ND443_00965 PF03143 Elongation factor Tu C-terminal domain ND443_00970 PF04324 BFD-like [2Fe-2S] binding domain ND443_00975 PF00210 Ferritin-like domain ND443_00980 PF00338 Ribosomal protein S10p/S20e ND443_00985 PF00297 Ribosomal protein L3 ND443_00990 PF00573 Ribosomal protein L4/L1 family ND443_00995 PF00276 Ribosomal protein L23 ND443_01000 PF00181 Ribosomal Proteins L2, RNA binding domain ND443_01000 PF03947 Ribosomal Proteins L2, C-terminal domain ND443_01005 PF00203 Ribosomal protein S19 ND443_01010 PF00237 Ribosomal protein L22p/L17e ND443_01015 PF07650 KH domain ND443_01015 PF00189 Ribosomal protein S3, C-terminal domain ND443_01020 PF00252 Ribosomal protein L16p/L10e ND443_01025 PF00831 Ribosomal L29 protein ND443_01030 PF00366 Ribosomal protein S17 ND443_01035 PF00238 Ribosomal protein L14p/L23e ND443_01040 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ND443_01040 PF00467 KOW motif ND443_01045 PF00281 Ribosomal protein L5 ND443_01045 PF00673 ribosomal L5P family C-terminus ND443_01050 PF00253 Ribosomal protein S14p/S29e ND443_01055 PF00410 Ribosomal protein S8 ND443_01060 PF00347 Ribosomal protein L6 ND443_01065 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ND443_01070 PF00333 Ribosomal protein S5, N-terminal domain ND443_01070 PF03719 Ribosomal protein S5, C-terminal domain ND443_01075 PF00327 Ribosomal protein L30p/L7e ND443_01080 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ND443_01085 PF00344 SecY translocase ND443_01090 PF00444 Ribosomal protein L36 ND443_01095 PF00416 Ribosomal protein S13/S18 ND443_01100 PF00411 Ribosomal protein S11 ND443_01105 PF00163 Ribosomal protein S4/S9 N-terminal domain ND443_01105 PF01479 S4 domain ND443_01110 PF01000 RNA polymerase Rpb3/RpoA insert domain ND443_01110 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ND443_01110 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ND443_01115 PF01196 Ribosomal protein L17 ND443_01120 PF13411 MerR HTH family regulatory protein ND443_01125 PF03889 Alternative ribosome-rescue factor A ND443_01130 PF01741 Large-conductance mechanosensitive channel, MscL ND443_01135 PF02080 TrkA-C domain ND443_01135 PF02254 TrkA-N domain ND443_01140 PF01029 NusB family ND443_01140 PF01189 16S rRNA methyltransferase RsmB/F ND443_01145 PF00551 Formyl transferase ND443_01145 PF02911 Formyl transferase, C-terminal domain ND443_01150 PF01327 Polypeptide deformylase ND443_01155 PF17782 DprA winged helix domain ND443_01155 PF02481 DNA recombination-mediator protein A ND443_01160 PF04361 Protein of unknown function (DUF494) ND443_01165 PF01396 Topoisomerase DNA binding C4 zinc finger ND443_01170 PF01300 Telomere recombination ND443_01175 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ND443_01175 PF01488 Shikimate / quinate 5-dehydrogenase ND443_01175 PF08501 Shikimate dehydrogenase substrate binding domain ND443_01180 PF00132 Bacterial transferase hexapeptide (six repeats) ND443_01210 PF00474 Sodium:solute symporter family ND443_01215 PF04341 Protein of unknown function, DUF485 ND443_01220 PF16177 Acetyl-coenzyme A synthetase N-terminus ND443_01220 PF13193 AMP-binding enzyme C-terminal domain ND443_01220 PF00501 AMP-binding enzyme ND443_01225 PF00375 Sodium:dicarboxylate symporter family ND443_01235 PF04143 Sulphur transport ND443_01240 PF01206 Sulfurtransferase TusA ND443_01245 PF02719 Polysaccharide biosynthesis protein ND443_01250 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND443_01255 PF02350 UDP-N-acetylglucosamine 2-epimerase ND443_01260 PF03102 NeuB family ND443_01260 PF08666 SAF domain ND443_01270 PF00483 Nucleotidyl transferase ND443_01280 PF02348 Cytidylyltransferase ND443_01280 PF13472 GDSL-like Lipase/Acylhydrolase family ND443_01305 PF00795 Carbon-nitrogen hydrolase ND443_01305 PF02540 NAD synthase ND443_01310 PF00117 Glutamine amidotransferase class-I ND443_01315 PF00977 Histidine biosynthesis protein ND443_01320 PF02719 Polysaccharide biosynthesis protein ND443_01320 PF08485 Polysaccharide biosynthesis protein C-terminal ND443_01325 PF01370 NAD dependent epimerase/dehydratase family ND443_01330 PF02350 UDP-N-acetylglucosamine 2-epimerase ND443_01355 PF11412 Disulphide bond corrector protein DsbC ND443_01355 PF02683 Cytochrome C biogenesis protein transmembrane region ND443_01360 PF03091 CutA1 divalent ion tolerance protein ND443_01365 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND443_01370 PF10415 Fumarase C C-terminus ND443_01370 PF00206 Lyase ND443_01375 PF04186 FxsA cytoplasmic membrane protein ND443_01380 PF00166 Chaperonin 10 Kd subunit ND443_01385 PF00118 TCP-1/cpn60 chaperonin family ND443_01390 PF13698 Domain of unknown function (DUF4156) ND443_01395 PF04055 Radical SAM superfamily ND443_01400 PF01132 Elongation factor P (EF-P) OB domain ND443_01400 PF08207 Elongation factor P (EF-P) KOW-like domain ND443_01400 PF09285 Elongation factor P, C-terminal ND443_01405 PF18416 N-acetylglucosamine binding protein domain 2 ND443_01405 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND443_01410 PF00196 Bacterial regulatory proteins, luxR family ND443_01420 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND443_01420 PF02753 Pili assembly chaperone PapD, C-terminal domain ND443_01425 PF13953 PapC C-terminal domain ND443_01425 PF00577 Outer membrane usher protein ND443_01425 PF13954 PapC N-terminal domain ND443_01430 PF00419 Fimbrial protein ND443_01435 PF00893 Small Multidrug Resistance protein ND443_01440 PF08212 Lipocalin-like domain ND443_01445 PF02313 Fumarate reductase subunit D ND443_01450 PF02300 Fumarate reductase subunit C ND443_01455 PF13085 2Fe-2S iron-sulfur cluster binding domain ND443_01455 PF13183 4Fe-4S dicluster domain ND443_01460 PF02910 Fumarate reductase flavoprotein C-term ND443_01460 PF00890 FAD binding domain ND443_01465 PF00152 tRNA synthetases class II (D, K and N) ND443_01470 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND443_01470 PF12795 Mechanosensitive ion channel porin domain ND443_01470 PF00924 Mechanosensitive ion channel ND443_01475 PF02666 Phosphatidylserine decarboxylase ND443_01480 PF03193 RsgA GTPase ND443_01485 PF00929 Exonuclease ND443_01505 PF08331 Domain of unknown function (DUF1730) ND443_01510 PF03853 YjeF-related protein N-terminus ND443_01510 PF01256 Carbohydrate kinase ND443_01515 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ND443_01520 PF01520 N-acetylmuramoyl-L-alanine amidase ND443_01525 PF01119 DNA mismatch repair protein, C-terminal domain ND443_01525 PF08676 MutL C terminal dimerisation domain ND443_01535 PF17209 Hfq protein ND443_01540 PF16360 GTP-binding GTPase Middle Region ND443_01540 PF01926 50S ribosome-binding GTPase ND443_01540 PF13167 GTP-binding GTPase N-terminal ND443_01545 PF12221 Bacterial membrane protein N terminal ND443_01545 PF01145 SPFH domain / Band 7 family ND443_01550 PF01145 SPFH domain / Band 7 family ND443_01555 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ND443_01560 PF00709 Adenylosuccinate synthetase ND443_01565 PF02082 Transcriptional regulator ND443_01570 PF17876 Cold shock domain ND443_01570 PF00575 S1 RNA binding domain ND443_01570 PF00773 RNB domain ND443_01570 PF08206 Ribonuclease B OB domain ND443_01570 PF08461 Ribonuclease R winged-helix domain ND443_01575 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND443_01575 PF00588 SpoU rRNA Methylase family ND443_01595 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND443_01600 PF13954 PapC N-terminal domain ND443_01600 PF00577 Outer membrane usher protein ND443_01600 PF13953 PapC C-terminal domain ND443_01620 PF00326 Prolyl oligopeptidase family ND443_01630 PF01250 Ribosomal protein S6 ND443_01635 PF00436 Single-strand binding protein family ND443_01640 PF01084 Ribosomal protein S18 ND443_01645 PF03948 Ribosomal protein L9, C-terminal domain ND443_01645 PF01281 Ribosomal protein L9, N-terminal domain ND443_01650 PF04225 Opacity-associated protein A LysM-like domain ND443_01650 PF08525 Opacity-associated protein A N-terminal motif ND443_01655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND443_01655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND443_01660 PF04405 Domain of Unknown function (DUF542) ND443_01660 PF01814 Hemerythrin HHE cation binding domain ND443_01665 PF00149 Calcineurin-like phosphoesterase ND443_01665 PF02872 5'-nucleotidase, C-terminal domain ND443_01670 PF00459 Inositol monophosphatase family ND443_01675 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ND443_01680 PF06526 Protein of unknown function (DUF1107) ND443_01685 PF00571 CBS domain ND443_01685 PF03471 Transporter associated domain ND443_01685 PF01595 Cyclin M transmembrane N-terminal domain ND443_01690 PF01625 Peptide methionine sulfoxide reductase ND443_01695 PF17243 POTRA domain TamA domain 1 ND443_01695 PF01103 Surface antigen ND443_01695 PF07244 Surface antigen variable number repeat ND443_01700 PF04357 TamB, inner membrane protein subunit of TAM complex ND443_01705 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ND443_01710 PF00719 Inorganic pyrophosphatase ND443_01715 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ND443_01720 PF01225 Mur ligase family, catalytic domain ND443_01720 PF02875 Mur ligase family, glutamate ligase domain ND443_01720 PF08245 Mur ligase middle domain ND443_01725 PF01316 Arginine repressor, DNA binding domain ND443_01725 PF02863 Arginine repressor, C-terminal domain ND443_01730 PF00056 lactate/malate dehydrogenase, NAD binding domain ND443_01730 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ND443_01735 PF13693 Winged helix-turn-helix DNA-binding ND443_01750 PF00348 Polyprenyl synthetase ND443_01755 PF00829 Ribosomal prokaryotic L21 protein ND443_01760 PF01016 Ribosomal L27 protein ND443_01765 PF00892 EamA-like transporter family ND443_01770 PF01926 50S ribosome-binding GTPase ND443_01770 PF01018 GTP1/OBG ND443_01775 PF00512 His Kinase A (phospho-acceptor) domain ND443_01775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_01775 PF00672 HAMP domain ND443_01780 PF00486 Transcriptional regulatory protein, C terminal ND443_01780 PF00072 Response regulator receiver domain ND443_01785 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ND443_01790 PF03449 Transcription elongation factor, N-terminal ND443_01790 PF01272 Transcription elongation factor, GreA/GreB, C-term ND443_01795 PF01985 CRS1 / YhbY (CRM) domain ND443_01800 PF01728 FtsJ-like methyltransferase ND443_01805 PF17862 AAA+ lid domain ND443_01805 PF06480 FtsH Extracellular ND443_01805 PF01434 Peptidase family M41 ND443_01805 PF00004 ATPase family associated with various cellular activities (AAA) ND443_01810 PF00809 Pterin binding enzyme ND443_01815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND443_01815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND443_01815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND443_01815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND443_01820 PF03840 Preprotein translocase SecG subunit ND443_01835 PF17384 RimP C-terminal SH3 domain ND443_01835 PF02576 RimP N-terminal domain ND443_01840 PF08529 NusA N-terminal domain ND443_01840 PF00575 S1 RNA binding domain ND443_01840 PF13184 NusA-like KH domain ND443_01845 PF00009 Elongation factor Tu GTP binding domain ND443_01845 PF03144 Elongation factor Tu domain 2 ND443_01845 PF11987 Translation-initiation factor 2 ND443_01845 PF08364 Bacterial translation initiation factor IF-2 associated region ND443_01845 PF04760 Translation initiation factor IF-2, N-terminal region ND443_01850 PF02033 Ribosome-binding factor A ND443_01855 PF16198 tRNA pseudouridylate synthase B C-terminal domain ND443_01855 PF01509 TruB family pseudouridylate synthase (N terminal domain) ND443_01855 PF09157 Pseudouridine synthase II TruB, C-terminal ND443_01860 PF00312 Ribosomal protein S15 ND443_01865 PF00575 S1 RNA binding domain ND443_01865 PF03725 3' exoribonuclease family, domain 2 ND443_01865 PF01138 3' exoribonuclease family, domain 1 ND443_01865 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ND443_01865 PF00013 KH domain ND443_01870 PF07719 Tetratricopeptide repeat ND443_01870 PF13181 Tetratricopeptide repeat ND443_01875 PF00271 Helicase conserved C-terminal domain ND443_01875 PF00270 DEAD/DEAH box helicase ND443_01875 PF03880 DbpA RNA binding domain ND443_01875 PF12343 Cold shock protein DEAD box A ND443_01880 PF00296 Luciferase-like monooxygenase ND443_01890 PF03313 Serine dehydratase alpha chain ND443_01895 PF01136 Peptidase family U32 ND443_01900 PF01136 Peptidase family U32 ND443_01905 PF02036 SCP-2 sterol transfer family ND443_01910 PF13508 Acetyltransferase (GNAT) domain ND443_01915 PF01541 GIY-YIG catalytic domain ND443_01920 PF13520 Amino acid permease ND443_01925 PF01276 Orn/Lys/Arg decarboxylase, major domain ND443_01925 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND443_01925 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND443_01930 PF10940 Protein of unknown function (DUF2618) ND443_01940 PF13460 NAD(P)H-binding ND443_01945 PF12706 Beta-lactamase superfamily domain ND443_01955 PF07969 Amidohydrolase family ND443_01960 PF00005 ABC transporter ND443_01965 PF00005 ABC transporter ND443_01970 PF06007 Phosphonate metabolism protein PhnJ ND443_01975 PF05861 Bacterial phosphonate metabolism protein (PhnI) ND443_01980 PF05845 Bacterial phosphonate metabolism protein (PhnH) ND443_01985 PF06754 Phosphonate metabolism protein PhnG ND443_01995 PF03477 ATP cone domain ND443_01995 PF13597 Anaerobic ribonucleoside-triphosphate reductase ND443_02000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND443_02000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND443_02005 PF06877 Regulator of ribonuclease activity B ND443_02010 PF00583 Acetyltransferase (GNAT) family ND443_02015 PF00133 tRNA synthetases class I (I, L, M and V) ND443_02015 PF10458 Valyl tRNA synthetase tRNA binding arm ND443_02015 PF08264 Anticodon-binding domain of tRNA ND443_02020 PF04364 DNA polymerase III chi subunit, HolC ND443_02025 PF02789 Cytosol aminopeptidase family, N-terminal domain ND443_02025 PF00883 Cytosol aminopeptidase family, catalytic domain ND443_02030 PF03739 Lipopolysaccharide export system permease LptF/LptG ND443_02035 PF03739 Lipopolysaccharide export system permease LptF/LptG ND443_02075 PF04221 RelB antitoxin ND443_02080 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ND443_02125 PF00892 EamA-like transporter family ND443_02170 PF01344 Kelch motif ND443_02175 PF06178 Oligogalacturonate-specific porin protein (KdgM) ND443_02180 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND443_02180 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND443_02180 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain ND443_02195 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND443_02195 PF09093 Lyase, catalytic ND443_02195 PF09092 Lyase, N terminal ND443_02195 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND443_02200 PF00884 Sulfatase ND443_02205 PF00455 DeoR C terminal sensor domain ND443_02205 PF08220 DeoR-like helix-turn-helix domain ND443_02210 PF08013 Tagatose 6 phosphate kinase ND443_02215 PF01380 SIS domain ND443_02220 PF03830 PTS system sorbose subfamily IIB component ND443_02225 PF03609 PTS system sorbose-specific iic component ND443_02230 PF03613 PTS system mannose/fructose/sorbose family IID component ND443_02240 PF01979 Amidohydrolase family ND443_02245 PF04962 KduI/IolB family ND443_02255 PF07470 Glycosyl Hydrolase Family 88 ND443_02260 PF04055 Radical SAM superfamily ND443_02260 PF13186 Iron-sulfur cluster-binding domain ND443_02265 PF00884 Sulfatase ND443_02275 PF01116 Fructose-bisphosphate aldolase class-II ND443_02285 PF10696 Protein of unknown function (DUF2501) ND443_02290 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND443_02305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND443_02310 PF00873 AcrB/AcrD/AcrF family ND443_02315 PF00465 Iron-containing alcohol dehydrogenase ND443_02320 PF02733 Dak1 domain ND443_02325 PF02734 DAK2 domain ND443_02330 PF03610 PTS system fructose IIA component ND443_02330 PF05524 PEP-utilising enzyme, N-terminal ND443_02330 PF00391 PEP-utilising enzyme, mobile domain ND443_02330 PF00381 PTS HPr component phosphorylation site ND443_02335 PF00989 PAS fold ND443_02335 PF02954 Bacterial regulatory protein, Fis family ND443_02335 PF00158 Sigma-54 interaction domain ND443_02340 PF00990 Diguanylate cyclase, GGDEF domain ND443_02345 PF07256 Protein of unknown function (DUF1435) ND443_02365 PF08468 Methyltransferase small domain N-terminal ND443_02365 PF05175 Methyltransferase small domain ND443_02370 PF03603 DNA polymerase III psi subunit ND443_02375 PF00583 Acetyltransferase (GNAT) family ND443_02380 PF00009 Elongation factor Tu GTP binding domain ND443_02380 PF03144 Elongation factor Tu domain 2 ND443_02380 PF16658 Class II release factor RF3, C-terminal domain ND443_02385 PF04972 BON domain ND443_02390 PF07043 Protein of unknown function (DUF1328) ND443_02395 PF01734 Patatin-like phospholipase ND443_02400 PF01026 TatD related DNase ND443_02405 PF01773 Na+ dependent nucleoside transporter N-terminus ND443_02405 PF07670 Nucleoside recognition ND443_02405 PF07662 Na+ dependent nucleoside transporter C-terminus ND443_02410 PF01791 DeoC/LacD family aldolase ND443_02415 PF02885 Glycosyl transferase family, helical bundle domain ND443_02415 PF00591 Glycosyl transferase family, a/b domain ND443_02415 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ND443_02420 PF01676 Metalloenzyme superfamily ND443_02425 PF01048 Phosphorylase superfamily ND443_02430 PF10144 Bacterial virulence factor haemolysin ND443_02435 PF18429 Domain of unknown function (DUF5609) ND443_02440 PF18073 Rubredoxin metal binding domain ND443_02445 PF13521 AAA domain ND443_02445 PF01381 Helix-turn-helix ND443_02450 PF00005 ABC transporter ND443_02450 PF12848 ABC transporter ND443_02465 PF00689 Cation transporting ATPase, C-terminus ND443_02465 PF00690 Cation transporter/ATPase, N-terminus ND443_02475 PF01464 Transglycosylase SLT domain ND443_02475 PF14718 Soluble lytic murein transglycosylase L domain ND443_02480 PF01371 Trp repressor protein ND443_02485 PF01931 Protein of unknown function DUF84 ND443_02490 PF00300 Histidine phosphatase superfamily (branch 1) ND443_02495 PF06445 GyrI-like small molecule binding domain ND443_02495 PF12833 Helix-turn-helix domain ND443_02500 PF05981 CreA protein ND443_02505 PF00072 Response regulator receiver domain ND443_02505 PF00486 Transcriptional regulatory protein, C terminal ND443_02515 PF08254 Threonine leader peptide ND443_02520 PF00696 Amino acid kinase family ND443_02520 PF01842 ACT domain ND443_02520 PF13840 ACT domain ND443_02520 PF00742 Homoserine dehydrogenase ND443_02520 PF03447 Homoserine dehydrogenase, NAD binding domain ND443_02525 PF08544 GHMP kinases C terminal ND443_02525 PF00288 GHMP kinases N terminal domain ND443_02530 PF00291 Pyridoxal-phosphate dependent enzyme ND443_02530 PF14821 Threonine synthase N terminus ND443_02535 PF03883 Peroxide stress protein YaaA ND443_02540 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND443_02545 PF00994 Probable molybdopterin binding domain ND443_02550 PF07690 Major Facilitator Superfamily ND443_02560 PF01184 GPR1/FUN34/yaaH family ND443_02565 PF00012 Hsp70 protein ND443_02570 PF00226 DnaJ domain ND443_02570 PF01556 DnaJ C terminal domain ND443_02570 PF00684 DnaJ central domain ND443_02575 PF06965 Na+/H+ antiporter 1 ND443_02580 PF03466 LysR substrate binding domain ND443_02580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_02585 PF01649 Ribosomal protein S20 ND443_02590 PF06574 FAD synthetase ND443_02590 PF01687 Riboflavin kinase ND443_02595 PF08264 Anticodon-binding domain of tRNA ND443_02595 PF00133 tRNA synthetases class I (I, L, M and V) ND443_02595 PF06827 Zinc finger found in FPG and IleRS ND443_02600 PF01252 Signal peptidase (SPase) II ND443_02605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND443_02610 PF02401 LytB protein ND443_02615 PF01113 Dihydrodipicolinate reductase, N-terminus ND443_02615 PF05173 Dihydrodipicolinate reductase, C-terminus ND443_02620 PF00117 Glutamine amidotransferase class-I ND443_02620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ND443_02625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND443_02625 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ND443_02625 PF02142 MGS-like domain ND443_02630 PF01810 LysE type translocator ND443_02635 PF06738 Putative threonine/serine exporter ND443_02640 PF12821 Threonine/Serine exporter, ThrE ND443_02645 PF00186 Dihydrofolate reductase ND443_02655 PF00149 Calcineurin-like phosphoesterase ND443_02660 PF04379 ApaG domain ND443_02665 PF00398 Ribosomal RNA adenine dimethylase ND443_02670 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ND443_02675 PF00639 PPIC-type PPIASE domain ND443_02675 PF09312 SurA N-terminal domain ND443_02680 PF04453 LPS transport system D ND443_02680 PF03968 OstA-like protein ND443_02685 PF05099 Tellurite resistance protein TerB ND443_02685 PF00226 DnaJ domain ND443_02690 PF00849 RNA pseudouridylate synthase ND443_02695 PF12137 RNA polymerase recycling family C-terminal ND443_02695 PF00176 SNF2 family N-terminal domain ND443_02695 PF18339 RapA N-terminal Tudor like domain 1 ND443_02695 PF18337 RapA N-terminal Tudor like domain ND443_02695 PF00271 Helicase conserved C-terminal domain ND443_02700 PF00136 DNA polymerase family B ND443_02700 PF03104 DNA polymerase family B, exonuclease domain ND443_02705 PF09335 SNARE associated Golgi protein ND443_02710 PF00005 ABC transporter ND443_02715 PF00528 Binding-protein-dependent transport system inner membrane component ND443_02725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND443_02725 PF12793 Sugar transport-related sRNA regulator N-term ND443_02735 PF07690 Major Facilitator Superfamily ND443_02740 PF00694 Aconitase C-terminal domain ND443_02745 PF00330 Aconitase family (aconitate hydratase) ND443_02750 PF00180 Isocitrate/isopropylmalate dehydrogenase ND443_02755 PF08502 LeuA allosteric (dimerisation) domain ND443_02755 PF00682 HMGL-like ND443_02760 PF03466 LysR substrate binding domain ND443_02760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_02765 PF00501 AMP-binding enzyme ND443_02770 PF00205 Thiamine pyrophosphate enzyme, central domain ND443_02770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND443_02770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND443_02775 PF10369 Small subunit of acetolactate synthase ND443_02780 PF00356 Bacterial regulatory proteins, lacI family ND443_02780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND443_02785 PF06610 L-alanine exporter ND443_02790 PF02381 MraZ protein, putative antitoxin-like ND443_02795 PF01795 MraW methylase family ND443_02800 PF04999 Cell division protein FtsL ND443_02805 PF03717 Penicillin-binding Protein dimerisation domain ND443_02805 PF00905 Penicillin binding protein transpeptidase domain ND443_02810 PF01225 Mur ligase family, catalytic domain ND443_02810 PF02875 Mur ligase family, glutamate ligase domain ND443_02810 PF08245 Mur ligase middle domain ND443_02815 PF08245 Mur ligase middle domain ND443_02815 PF01225 Mur ligase family, catalytic domain ND443_02815 PF02875 Mur ligase family, glutamate ligase domain ND443_02820 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ND443_02820 PF00953 Glycosyl transferase family 4 ND443_02825 PF02875 Mur ligase family, glutamate ligase domain ND443_02825 PF08245 Mur ligase middle domain ND443_02830 PF01098 Cell cycle protein ND443_02835 PF04101 Glycosyltransferase family 28 C-terminal domain ND443_02835 PF03033 Glycosyltransferase family 28 N-terminal domain ND443_02840 PF01225 Mur ligase family, catalytic domain ND443_02840 PF02875 Mur ligase family, glutamate ligase domain ND443_02840 PF08245 Mur ligase middle domain ND443_02845 PF07478 D-ala D-ala ligase C-terminus ND443_02845 PF01820 D-ala D-ala ligase N-terminus ND443_02850 PF03799 Cell division protein FtsQ ND443_02850 PF08478 POTRA domain, FtsQ-type ND443_02855 PF02491 SHS2 domain inserted in FTSA ND443_02860 PF00091 Tubulin/FtsZ family, GTPase domain ND443_02860 PF12327 FtsZ family, C-terminal domain ND443_02865 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ND443_02875 PF06558 Secretion monitor precursor protein (SecM) ND443_02880 PF07517 SecA DEAD-like domain ND443_02880 PF01043 SecA preprotein cross-linking domain ND443_02880 PF02810 SEC-C motif ND443_02880 PF07516 SecA Wing and Scaffold domain ND443_02885 PF00293 NUDIX domain ND443_02890 PF03884 DNA gyrase inhibitor YacG ND443_02895 PF07072 Cell division protein ND443_02900 PF01121 Dephospho-CoA kinase ND443_02905 PF00478 IMP dehydrogenase / GMP reductase domain ND443_02910 PF00482 Type II secretion system (T2SS), protein F ND443_02915 PF00437 Type II/IV secretion system protein ND443_02915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ND443_02920 PF07963 Prokaryotic N-terminal methylation motif ND443_02925 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ND443_02925 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ND443_02930 PF01510 N-acetylmuramoyl-L-alanine amidase ND443_02935 PF17113 Regulatory signalling modulator protein AmpE ND443_02940 PF00324 Amino acid permease ND443_02945 PF07729 FCD domain ND443_02945 PF00392 Bacterial regulatory proteins, gntR family ND443_02950 PF17831 Pyruvate dehydrogenase E1 component middle domain ND443_02950 PF00456 Transketolase, thiamine diphosphate binding domain ND443_02955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND443_02955 PF00364 Biotin-requiring enzyme ND443_02955 PF02817 e3 binding domain ND443_02960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND443_02960 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND443_02970 PF00330 Aconitase family (aconitate hydratase) ND443_02970 PF06434 Aconitate hydratase 2 N-terminus ND443_02970 PF11791 Aconitate B N-terminal domain ND443_02975 PF06062 Uncharacterised protein family (UPF0231) ND443_02980 PF00892 EamA-like transporter family ND443_02985 PF02675 S-adenosylmethionine decarboxylase ND443_02990 PF17284 Spermidine synthase tetramerisation domain ND443_02995 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND443_03000 PF07731 Multicopper oxidase ND443_03000 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND443_03000 PF07732 Multicopper oxidase ND443_03000 PF00394 Multicopper oxidase ND443_03005 PF00156 Phosphoribosyl transferase domain ND443_03010 PF00484 Carbonic anhydrase ND443_03015 PF00005 ABC transporter ND443_03020 PF01061 ABC-2 type transporter ND443_03025 PF01522 Polysaccharide deacetylase ND443_03030 PF02261 Aspartate decarboxylase ND443_03035 PF02569 Pantoate-beta-alanine ligase ND443_03040 PF02548 Ketopantoate hydroxymethyltransferase ND443_03045 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ND443_03050 PF12627 Probable RNA and SrmB- binding site of polymerase A ND443_03050 PF01743 Poly A polymerase head domain ND443_03050 PF12626 Polymerase A arginine-rich C-terminus ND443_03055 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND443_03060 PF01258 Prokaryotic dksA/traR C4-type zinc finger ND443_03065 PF03749 Sugar fermentation stimulation protein RE domain ND443_03065 PF17746 SfsA N-terminal OB domain ND443_03070 PF02834 LigT like Phosphoesterase ND443_03075 PF08482 ATP-dependent helicase C-terminal ND443_03075 PF00270 DEAD/DEAH box helicase ND443_03075 PF04408 Helicase associated domain (HA2) ND443_03075 PF00271 Helicase conserved C-terminal domain ND443_03080 PF00905 Penicillin binding protein transpeptidase domain ND443_03080 PF14814 Bifunctional transglycosylase second domain ND443_03080 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ND443_03080 PF00912 Transglycosylase ND443_03085 PF00202 Aminotransferase class-III ND443_03090 PF00654 Voltage gated chloride channel ND443_03095 PF01521 Iron-sulphur cluster biosynthesis ND443_03100 PF03458 UPF0126 domain ND443_03105 PF01497 Periplasmic binding protein ND443_03110 PF01048 Phosphorylase superfamily ND443_03115 PF13286 Phosphohydrolase-associated domain ND443_03115 PF01966 HD domain ND443_03120 PF00595 PDZ domain ND443_03125 PF00072 Response regulator receiver domain ND443_03125 PF01627 Hpt domain ND443_03125 PF00512 His Kinase A (phospho-acceptor) domain ND443_03125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_03125 PF00672 HAMP domain ND443_03125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND443_03130 PF05958 tRNA (Uracil-5-)-methyltransferase ND443_03130 PF01938 TRAM domain ND443_03135 PF02824 TGS domain ND443_03135 PF04607 Region found in RelA / SpoT proteins ND443_03135 PF13291 ACT domain ND443_03140 PF03819 MazG nucleotide pyrophosphohydrolase domain ND443_03145 PF06418 CTP synthase N-terminus ND443_03145 PF00117 Glutamine amidotransferase class-I ND443_03150 PF03952 Enolase, N-terminal domain ND443_03150 PF00113 Enolase, C-terminal TIM barrel domain ND443_03155 PF04055 Radical SAM superfamily ND443_03160 PF01242 6-pyruvoyl tetrahydropterin synthase ND443_03165 PF00667 FAD binding domain ND443_03165 PF00258 Flavodoxin ND443_03165 PF00175 Oxidoreductase NAD-binding domain ND443_03170 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND443_03170 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND443_03175 PF01507 Phosphoadenosine phosphosulfate reductase family ND443_03190 PF04389 Peptidase family M28 ND443_03195 PF10414 Sirohaem synthase dimerisation region ND443_03195 PF14824 Sirohaem biosynthesis protein central ND443_03195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND443_03200 PF01507 Phosphoadenosine phosphosulfate reductase family ND443_03205 PF00009 Elongation factor Tu GTP binding domain ND443_03215 PF12084 Protein of unknown function (DUF3561) ND443_03220 PF04977 Septum formation initiator ND443_03225 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ND443_03230 PF02542 YgbB family ND443_03235 PF01142 tRNA pseudouridine synthase D (TruD) ND443_03240 PF01975 Survival protein SurE ND443_03250 PF01476 LysM domain ND443_03250 PF01551 Peptidase family M23 ND443_03255 PF00140 Sigma-70 factor, region 1.2 ND443_03255 PF04542 Sigma-70 region 2 ND443_03255 PF04539 Sigma-70 region 3 ND443_03255 PF04545 Sigma-70, region 4 ND443_03260 PF00488 MutS domain V ND443_03260 PF01624 MutS domain I ND443_03260 PF05188 MutS domain II ND443_03260 PF05192 MutS domain III ND443_03260 PF05190 MutS family domain IV ND443_03295 PF00501 AMP-binding enzyme ND443_03295 PF00668 Condensation domain ND443_03295 PF00550 Phosphopantetheine attachment site ND443_03295 PF13193 AMP-binding enzyme C-terminal domain ND443_03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_03330 PF00512 His Kinase A (phospho-acceptor) domain ND443_03330 PF09308 LuxQ, periplasmic ND443_03330 PF00072 Response regulator receiver domain ND443_03335 PF00196 Bacterial regulatory proteins, luxR family ND443_03335 PF00072 Response regulator receiver domain ND443_03350 PF01464 Transglycosylase SLT domain ND443_03370 PF01514 Secretory protein of YscJ/FliF family ND443_03390 PF12833 Helix-turn-helix domain ND443_03395 PF00263 Bacterial type II and III secretion system protein ND443_03395 PF03958 Bacterial type II/III secretion system short domain ND443_03400 PF07201 HrpJ-like domain ND443_03405 PF00771 FHIPEP family ND443_03415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND443_03415 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND443_03415 PF18269 T3SS EscN ATPase C-terminal domain ND443_03430 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND443_03435 PF00813 FliP family ND443_03440 PF01313 Bacterial export proteins, family 3 ND443_03445 PF01311 Bacterial export proteins, family 1 ND443_03450 PF01312 FlhB HrpN YscU SpaS Family ND443_03455 PF07720 Tetratricopeptide repeat ND443_03480 PF00550 Phosphopantetheine attachment site ND443_03500 PF18416 N-acetylglucosamine binding protein domain 2 ND443_03500 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND443_03505 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND443_03510 PF06750 Bacterial Peptidase A24 N-terminal domain ND443_03510 PF01478 Type IV leader peptidase family ND443_03520 PF12693 GspL periplasmic domain ND443_03520 PF05134 Type II secretion system (T2SS), protein L ND443_03525 PF03934 Type II secretion system (T2SS), protein K ND443_03530 PF07963 Prokaryotic N-terminal methylation motif ND443_03530 PF11612 Type II secretion system (T2SS), protein J ND443_03535 PF02501 Type II secretion system (T2SS), protein I ND443_03535 PF07963 Prokaryotic N-terminal methylation motif ND443_03545 PF08334 Type II secretion system (T2SS), protein G ND443_03545 PF07963 Prokaryotic N-terminal methylation motif ND443_03550 PF00482 Type II secretion system (T2SS), protein F ND443_03555 PF00437 Type II/IV secretion system protein ND443_03560 PF03958 Bacterial type II/III secretion system short domain ND443_03560 PF00263 Bacterial type II and III secretion system protein ND443_03565 PF11356 Type II secretion system protein C ND443_03590 PF05683 Fumarase C-terminus ND443_03590 PF05681 Fumarate hydratase (Fumerase) ND443_03595 PF07690 Major Facilitator Superfamily ND443_03600 PF02464 Competence-damaged protein ND443_03605 PF00154 recA bacterial DNA recombination protein ND443_03610 PF02631 RecX family ND443_03615 PF02272 DHHA1 domain ND443_03615 PF01411 tRNA synthetases class II (A) ND443_03615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND443_03620 PF02599 Global regulator protein family ND443_03645 PF01411 tRNA synthetases class II (A) ND443_03645 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND443_03650 PF13419 Haloacid dehalogenase-like hydrolase ND443_03655 PF09335 SNARE associated Golgi protein ND443_03660 PF04262 Glutamate-cysteine ligase ND443_03665 PF02664 S-Ribosylhomocysteinase (LuxS) ND443_03670 PF03471 Transporter associated domain ND443_03670 PF00571 CBS domain ND443_03670 PF01595 Cyclin M transmembrane N-terminal domain ND443_03675 PF01578 Cytochrome C assembly protein ND443_03680 PF00448 SRP54-type protein, GTPase domain ND443_03680 PF02881 SRP54-type protein, helical bundle domain ND443_03680 PF02978 Signal peptide binding domain ND443_03685 PF00886 Ribosomal protein S16 ND443_03690 PF01782 RimM N-terminal domain ND443_03690 PF05239 PRC-barrel domain ND443_03695 PF01746 tRNA (Guanine-1)-methyltransferase ND443_03700 PF01245 Ribosomal protein L19 ND443_03705 PF04338 Protein of unknown function, DUF481 ND443_03710 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND443_03715 PF00072 Response regulator receiver domain ND443_03715 PF04397 LytTr DNA-binding domain ND443_03720 PF00793 DAHP synthetase I family ND443_03725 PF02153 Prephenate dehydrogenase ND443_03725 PF01817 Chorismate mutase type II ND443_03730 PF01817 Chorismate mutase type II ND443_03730 PF00800 Prephenate dehydratase ND443_03740 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND443_03745 PF13525 Outer membrane lipoprotein ND443_03750 PF01479 S4 domain ND443_03750 PF00849 RNA pseudouridylate synthase ND443_03755 PF02578 Multi-copper polyphenol oxidoreductase laccase ND443_03760 PF00004 ATPase family associated with various cellular activities (AAA) ND443_03760 PF07724 AAA domain (Cdc48 subfamily) ND443_03760 PF17871 AAA lid domain ND443_03760 PF02861 Clp amino terminal domain, pathogenicity island component ND443_03760 PF10431 C-terminal, D2-small domain, of ClpB protein ND443_03795 PF03372 Endonuclease/Exonuclease/phosphatase family ND443_03800 PF01464 Transglycosylase SLT domain ND443_03800 PF01476 LysM domain ND443_03805 PF16123 Hydroxyacylglutathione hydrolase C-terminus ND443_03805 PF00753 Metallo-beta-lactamase superfamily ND443_03810 PF08241 Methyltransferase domain ND443_03815 PF00075 RNase H ND443_03820 PF00929 Exonuclease ND443_03830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND443_03830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND443_03830 PF09317 Domain of unknown function (DUF1974) ND443_03835 PF13580 SIS domain ND443_03840 PF13230 Glutamine amidotransferases class-II ND443_03845 PF03734 L,D-transpeptidase catalytic domain ND443_03850 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ND443_03850 PF11973 NQRA C-terminal domain ND443_03855 PF03116 NQR2, RnfD, RnfE family ND443_03860 PF04205 FMN-binding domain ND443_03865 PF02508 Rnf-Nqr subunit, membrane protein ND443_03870 PF02508 Rnf-Nqr subunit, membrane protein ND443_03875 PF00970 Oxidoreductase FAD-binding domain ND443_03875 PF00111 2Fe-2S iron-sulfur cluster binding domain ND443_03875 PF00175 Oxidoreductase NAD-binding domain ND443_03880 PF02424 ApbE family ND443_03885 PF04400 (Na+)-NQR maturation NqrM ND443_03890 PF03009 Glycerophosphoryl diester phosphodiesterase family ND443_03895 PF11798 IMS family HHH motif ND443_03895 PF00817 impB/mucB/samB family ND443_03895 PF11799 impB/mucB/samB family C-terminal domain ND443_03900 PF07687 Peptidase dimerisation domain ND443_03900 PF01546 Peptidase family M20/M25/M40 ND443_03905 PF00156 Phosphoribosyl transferase domain ND443_03910 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ND443_03915 PF07417 Sigma factor-binding transcriptional regulator Crl ND443_03920 PF01472 PUA domain ND443_03920 PF00696 Amino acid kinase family ND443_03925 PF00171 Aldehyde dehydrogenase family ND443_03930 PF07238 PilZ domain ND443_03930 PF07317 Flagellar regulator YcgR ND443_03955 PF07715 TonB-dependent Receptor Plug Domain ND443_03955 PF00593 TonB dependent receptor ND443_03960 PF01202 Shikimate kinase ND443_03980 PF07302 AroM protein ND443_03985 PF06865 Pyrimidine/purine nucleoside phosphorylase ND443_03990 PF04381 Putative exonuclease, RdgC ND443_03995 PF00480 ROK family ND443_04000 PF13476 AAA domain ND443_04005 PF12320 Type 5 capsule protein repressor C-terminal domain ND443_04005 PF00149 Calcineurin-like phosphoesterase ND443_04010 PF00072 Response regulator receiver domain ND443_04010 PF00486 Transcriptional regulatory protein, C terminal ND443_04015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_04015 PF00512 His Kinase A (phospho-acceptor) domain ND443_04015 PF00989 PAS fold ND443_04015 PF11808 Phosphate regulon sensor protein PhoR ND443_04020 PF12849 PBP superfamily domain ND443_04025 PF05525 Branched-chain amino acid transport protein ND443_04030 PF00324 Amino acid permease ND443_04035 PF00128 Alpha amylase, catalytic domain ND443_04035 PF02903 Alpha amylase, N-terminal ig-like domain ND443_04045 PF10417 C-terminal domain of 1-Cys peroxiredoxin ND443_04045 PF00578 AhpC/TSA family ND443_04050 PF04336 Acyl carrier protein phosphodiesterase ND443_04055 PF02547 Queuosine biosynthesis protein ND443_04060 PF01702 Queuine tRNA-ribosyltransferase ND443_04065 PF02699 Preprotein translocase subunit ND443_04070 PF13721 SecD export protein N-terminal TM region ND443_04070 PF02355 Protein export membrane protein ND443_04070 PF07549 SecD/SecF GG Motif ND443_04075 PF07549 SecD/SecF GG Motif ND443_04075 PF02355 Protein export membrane protein ND443_04080 PF03477 ATP cone domain ND443_04085 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND443_04085 PF01872 RibD C-terminal domain ND443_04090 PF00885 6,7-dimethyl-8-ribityllumazine synthase ND443_04095 PF01029 NusB family ND443_04100 PF02769 AIR synthase related protein, C-terminal domain ND443_04100 PF00586 AIR synthase related protein, N-terminal domain ND443_04105 PF04608 Phosphatidylglycerophosphatase A ND443_04110 PF02780 Transketolase, C-terminal domain ND443_04110 PF02779 Transketolase, pyrimidine binding domain ND443_04110 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ND443_04115 PF00348 Polyprenyl synthetase ND443_04120 PF02609 Exonuclease VII small subunit ND443_04125 PF02568 Thiamine biosynthesis protein (ThiI) ND443_04125 PF02926 THUMP domain ND443_04130 PF02954 Bacterial regulatory protein, Fis family ND443_04130 PF00072 Response regulator receiver domain ND443_04130 PF14532 Sigma-54 interaction domain ND443_04135 PF00672 HAMP domain ND443_04135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_04135 PF00512 His Kinase A (phospho-acceptor) domain ND443_04145 PF07690 Major Facilitator Superfamily ND443_04150 PF01965 DJ-1/PfpI family ND443_04155 PF08546 Ketopantoate reductase PanE/ApbA C terminal ND443_04155 PF02558 Ketopantoate reductase PanE/ApbA ND443_04160 PF04461 Protein of unknown function (DUF520) ND443_04165 PF07690 Major Facilitator Superfamily ND443_04170 PF01040 UbiA prenyltransferase family ND443_04175 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ND443_04180 PF00510 Cytochrome c oxidase subunit III ND443_04185 PF00115 Cytochrome C and Quinol oxidase polypeptide I ND443_04190 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ND443_04190 PF06481 COX Aromatic Rich Motif ND443_04195 PF03502 Nucleoside-specific channel-forming protein, Tsx ND443_04200 PF07690 Major Facilitator Superfamily ND443_04205 PF03923 Uncharacterized lipoprotein ND443_04205 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND443_04210 PF01722 BolA-like protein ND443_04215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND443_04215 PF05698 Bacterial trigger factor protein (TF) C-terminus ND443_04215 PF05697 Bacterial trigger factor protein (TF) ND443_04220 PF00574 Clp protease ND443_04225 PF07724 AAA domain (Cdc48 subfamily) ND443_04225 PF06689 ClpX C4-type zinc finger ND443_04225 PF10431 C-terminal, D2-small domain, of ClpB protein ND443_04230 PF00004 ATPase family associated with various cellular activities (AAA) ND443_04230 PF05362 Lon protease (S16) C-terminal proteolytic domain ND443_04230 PF02190 ATP-dependent protease La (LON) substrate-binding domain ND443_04235 PF00216 Bacterial DNA-binding protein ND443_04240 PF13145 PPIC-type PPIASE domain ND443_04255 PF06508 Queuosine biosynthesis protein QueC ND443_04260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND443_04260 PF12793 Sugar transport-related sRNA regulator N-term ND443_04275 PF01037 Lrp/AsnC ligand binding domain ND443_04275 PF13404 AsnC-type helix-turn-helix domain ND443_04280 PF00664 ABC transporter transmembrane region ND443_04280 PF00005 ABC transporter ND443_04285 PF00664 ABC transporter transmembrane region ND443_04285 PF00005 ABC transporter ND443_04290 PF00543 Nitrogen regulatory protein P-II ND443_04295 PF00909 Ammonium Transporter Family ND443_04305 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND443_04315 PF05321 Haemolysin expression modulating protein ND443_04320 PF10757 Biofilm formation regulator YbaJ ND443_04330 PF00444 Ribosomal protein L36 ND443_04335 PF01197 Ribosomal protein L31 ND443_04340 PF00873 AcrB/AcrD/AcrF family ND443_04345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND443_04345 PF00529 HlyD membrane-fusion protein of T1SS ND443_04350 PF08361 MAATS-type transcriptional repressor, C-terminal region ND443_04350 PF00440 Bacterial regulatory proteins, tetR family ND443_04355 PF02635 DsrE/DsrF-like family ND443_04360 PF00924 Mechanosensitive ion channel ND443_04360 PF12795 Mechanosensitive ion channel porin domain ND443_04360 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND443_04365 PF10689 Protein of unknown function (DUF2496) ND443_04375 PF04304 Protein of unknown function (DUF454) ND443_04380 PF00156 Phosphoribosyl transferase domain ND443_04385 PF01970 Tripartite tricarboxylate transporter TctA family ND443_04400 PF00072 Response regulator receiver domain ND443_04400 PF00486 Transcriptional regulatory protein, C terminal ND443_04405 PF00512 His Kinase A (phospho-acceptor) domain ND443_04405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_04410 PF12169 DNA polymerase III subunits gamma and tau domain III ND443_04410 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ND443_04410 PF12170 DNA polymerase III tau subunit V interacting with alpha ND443_04415 PF02575 YbaB/EbfC DNA-binding family ND443_04420 PF02132 RecR protein ND443_04420 PF13662 Toprim domain ND443_04425 PF00183 Hsp90 protein ND443_04425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_04430 PF05191 Adenylate kinase, active site lid ND443_04435 PF00762 Ferrochelatase ND443_04440 PF02706 Chain length determinant protein ND443_04445 PF00294 pfkB family carbohydrate kinase ND443_04450 PF00999 Sodium/hydrogen exchanger family ND443_04450 PF02254 TrkA-N domain ND443_04455 PF02872 5'-nucleotidase, C-terminal domain ND443_04455 PF00149 Calcineurin-like phosphoesterase ND443_04460 PF04073 Aminoacyl-tRNA editing domain ND443_04465 PF01963 TraB family ND443_04470 PF00403 Heavy-metal-associated domain ND443_04475 PF13411 MerR HTH family regulatory protein ND443_04480 PF01957 NfeD-like C-terminal, partner-binding ND443_04485 PF01145 SPFH domain / Band 7 family ND443_04485 PF16200 C-terminal region of band_7 ND443_04490 PF00085 Thioredoxin ND443_04495 PF00106 short chain dehydrogenase ND443_04500 PF13472 GDSL-like Lipase/Acylhydrolase family ND443_04505 PF00005 ABC transporter ND443_04515 PF02222 ATP-grasp domain ND443_04515 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ND443_04520 PF00731 AIR carboxylase ND443_04525 PF00149 Calcineurin-like phosphoesterase ND443_04530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND443_04535 PF09190 DALR domain ND443_04535 PF01406 tRNA synthetases class I (C) catalytic domain ND443_04550 PF00419 Fimbrial protein ND443_04555 PF13953 PapC C-terminal domain ND443_04555 PF13954 PapC N-terminal domain ND443_04555 PF00577 Outer membrane usher protein ND443_04560 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND443_04560 PF02753 Pili assembly chaperone PapD, C-terminal domain ND443_04595 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ND443_04595 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ND443_04605 PF01022 Bacterial regulatory protein, arsR family ND443_04610 PF02040 Arsenical pump membrane protein ND443_04615 PF03960 ArsC family ND443_04625 PF00501 AMP-binding enzyme ND443_04650 PF01292 Prokaryotic cytochrome b561 ND443_04660 PF00343 Carbohydrate phosphorylase ND443_04670 PF00072 Response regulator receiver domain ND443_04670 PF00486 Transcriptional regulatory protein, C terminal ND443_04680 PF00483 Nucleotidyl transferase ND443_04690 PF00535 Glycosyl transferase family 2 ND443_04690 PF07238 PilZ domain ND443_04690 PF03552 Cellulose synthase ND443_04710 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND443_04710 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND443_04710 PF00703 Glycosyl hydrolases family 2 ND443_04710 PF16355 Domain of unknown function (DUF4982) ND443_04715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_04715 PF00072 Response regulator receiver domain ND443_04715 PF01627 Hpt domain ND443_04715 PF00672 HAMP domain ND443_04715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND443_04715 PF00512 His Kinase A (phospho-acceptor) domain ND443_04720 PF00990 Diguanylate cyclase, GGDEF domain ND443_04720 PF00072 Response regulator receiver domain ND443_04725 PF00440 Bacterial regulatory proteins, tetR family ND443_04755 PF00196 Bacterial regulatory proteins, luxR family ND443_04760 PF00313 'Cold-shock' DNA-binding domain ND443_04765 PF00313 'Cold-shock' DNA-binding domain ND443_04770 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ND443_04780 PF00990 Diguanylate cyclase, GGDEF domain ND443_04780 PF05230 MASE2 domain ND443_04785 PF02416 mttA/Hcf106 family ND443_04790 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ND443_04790 PF04055 Radical SAM superfamily ND443_04795 PF03099 Biotin/lipoate A/B protein ligase family ND443_04800 PF04359 Protein of unknown function (DUF493) ND443_04805 PF00768 D-alanyl-D-alanine carboxypeptidase ND443_04805 PF07943 Penicillin-binding protein 5, C-terminal domain ND443_04810 PF03330 Lytic transglycolase ND443_04810 PF05036 Sporulation related domain ND443_04815 PF01098 Cell cycle protein ND443_04820 PF00905 Penicillin binding protein transpeptidase domain ND443_04820 PF03717 Penicillin-binding Protein dimerisation domain ND443_04825 PF02590 Predicted SPOUT methyltransferase ND443_04835 PF01467 Cytidylyltransferase-like ND443_04840 PF06144 DNA polymerase III, delta subunit ND443_04840 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ND443_04845 PF04390 Lipopolysaccharide-assembly ND443_04850 PF08264 Anticodon-binding domain of tRNA ND443_04850 PF13603 Leucyl-tRNA synthetase, Domain 2 ND443_04850 PF00133 tRNA synthetases class I (I, L, M and V) ND443_04855 PF07295 Zinc-ribbon containing domain ND443_04860 PF00005 ABC transporter ND443_04865 PF00528 Binding-protein-dependent transport system inner membrane component ND443_04870 PF00528 Binding-protein-dependent transport system inner membrane component ND443_04875 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND443_04880 PF00795 Carbon-nitrogen hydrolase ND443_04885 PF00571 CBS domain ND443_04885 PF03471 Transporter associated domain ND443_04890 PF02130 Uncharacterized protein family UPF0054 ND443_04895 PF02562 PhoH-like protein ND443_04900 PF04055 Radical SAM superfamily ND443_04900 PF00919 Uncharacterized protein family UPF0004 ND443_04900 PF01938 TRAM domain ND443_04905 PF01494 FAD binding domain ND443_04940 PF00733 Asparagine synthase ND443_04940 PF13537 Glutamine amidotransferase domain ND443_04945 PF13344 Haloacid dehalogenase-like hydrolase ND443_04950 PF01047 MarR family ND443_04950 PF00480 ROK family ND443_04955 PF01979 Amidohydrolase family ND443_04960 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ND443_04965 PF02378 Phosphotransferase system, EIIC ND443_04965 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND443_04965 PF00367 phosphotransferase system, EIIB ND443_04970 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND443_04970 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ND443_04975 PF03573 outer membrane porin, OprD family ND443_04980 PF13982 YbfN-like lipoprotein ND443_04985 PF03173 Putative carbohydrate binding domain ND443_04985 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ND443_04985 PF00728 Glycosyl hydrolase family 20, catalytic domain ND443_04985 PF02838 Glycosyl hydrolase family 20, domain 2 ND443_04990 PF01475 Ferric uptake regulator family ND443_04995 PF00258 Flavodoxin ND443_05000 PF02203 Tar ligand binding domain homologue ND443_05000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND443_05000 PF00672 HAMP domain ND443_05005 PF01402 Ribbon-helix-helix protein, copG family ND443_05010 PF12697 Alpha/beta hydrolase family ND443_05015 PF17206 SeqA protein N-terminal domain ND443_05015 PF03925 SeqA protein C-terminal domain ND443_05020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND443_05020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND443_05020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND443_05020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND443_05030 PF00072 Response regulator receiver domain ND443_05030 PF00486 Transcriptional regulatory protein, C terminal ND443_05035 PF13493 Domain of unknown function (DUF4118) ND443_05035 PF13492 GAF domain ND443_05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_05035 PF00512 His Kinase A (phospho-acceptor) domain ND443_05035 PF02702 Osmosensitive K+ channel His kinase sensor domain ND443_05040 PF02669 K+-transporting ATPase, c chain ND443_05050 PF03814 Potassium-transporting ATPase A subunit ND443_05055 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) ND443_05060 PF10725 Protein of unknown function (DUF2517) ND443_05065 PF08349 Protein of unknown function (DUF1722) ND443_05070 PF00875 DNA photolyase ND443_05070 PF03441 FAD binding domain of DNA photolyase ND443_05075 PF02112 cAMP phosphodiesterases class-II ND443_05080 PF01784 NIF3 (NGG1p interacting factor 3) ND443_05085 PF02682 Carboxyltransferase domain, subdomain C and D ND443_05090 PF02626 Carboxyltransferase domain, subdomain A and B ND443_05095 PF03746 LamB/YcsF family ND443_05110 PF01470 Pyroglutamyl peptidase ND443_05120 PF00285 Citrate synthase, C-terminal domain ND443_05125 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND443_05130 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND443_05135 PF02910 Fumarate reductase flavoprotein C-term ND443_05135 PF00890 FAD binding domain ND443_05140 PF13085 2Fe-2S iron-sulfur cluster binding domain ND443_05145 PF16078 2-oxoglutarate dehydrogenase N-terminus ND443_05145 PF00676 Dehydrogenase E1 component ND443_05145 PF02779 Transketolase, pyrimidine binding domain ND443_05145 PF16870 2-oxoglutarate dehydrogenase C-terminal ND443_05150 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND443_05150 PF00364 Biotin-requiring enzyme ND443_05150 PF02817 e3 binding domain ND443_05155 PF08442 ATP-grasp domain ND443_05155 PF00549 CoA-ligase ND443_05160 PF02629 CoA binding domain ND443_05160 PF00549 CoA-ligase ND443_05165 PF02872 5'-nucleotidase, C-terminal domain ND443_05165 PF00149 Calcineurin-like phosphoesterase ND443_05170 PF01654 Cytochrome bd terminal oxidase subunit I ND443_05175 PF02322 Cytochrome bd terminal oxidase subunit II ND443_05180 PF08173 Membrane bound YbgT-like protein ND443_05185 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ND443_05190 PF03061 Thioesterase superfamily ND443_05195 PF01618 MotA/TolQ/ExbB proton channel family ND443_05200 PF02472 Biopolymer transport protein ExbD/TolR ND443_05205 PF06519 TolA C-terminal ND443_05205 PF06519 TolA C-terminal ND443_05210 PF07676 WD40-like Beta Propeller Repeat ND443_05210 PF04052 TolB amino-terminal domain ND443_05215 PF00691 OmpA family ND443_05220 PF16331 TolA binding protein trimerisation ND443_05220 PF13174 Tetratricopeptide repeat ND443_05250 PF02445 Quinolinate synthetase A protein ND443_05255 PF04973 Nicotinamide mononucleotide transporter ND443_05260 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND443_05260 PF00072 Response regulator receiver domain ND443_05260 PF01627 Hpt domain ND443_05260 PF00512 His Kinase A (phospho-acceptor) domain ND443_05260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_05260 PF00989 PAS fold ND443_05265 PF00196 Bacterial regulatory proteins, luxR family ND443_05265 PF00072 Response regulator receiver domain ND443_05270 PF00793 DAHP synthetase I family ND443_05275 PF00300 Histidine phosphatase superfamily (branch 1) ND443_05285 PF01263 Aldose 1-epimerase ND443_05290 PF10509 Galactokinase galactose-binding signature ND443_05290 PF08544 GHMP kinases C terminal ND443_05290 PF00288 GHMP kinases N terminal domain ND443_05295 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ND443_05295 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ND443_05300 PF16363 GDP-mannose 4,6 dehydratase ND443_05315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_05315 PF03459 TOBE domain ND443_05320 PF10766 Multidrug efflux pump-associated protein AcrZ ND443_05330 PF00528 Binding-protein-dependent transport system inner membrane component ND443_05335 PF03459 TOBE domain ND443_05335 PF00005 ABC transporter ND443_05345 PF10282 Lactonase, 7-bladed beta-propeller ND443_05350 PF00202 Aminotransferase class-III ND443_05355 PF06968 Biotin and Thiamin Synthesis associated domain ND443_05355 PF04055 Radical SAM superfamily ND443_05360 PF00155 Aminotransferase class I and II ND443_05365 PF08241 Methyltransferase domain ND443_05375 PF00005 ABC transporter ND443_05380 PF00271 Helicase conserved C-terminal domain ND443_05380 PF04851 Type III restriction enzyme, res subunit ND443_05380 PF02151 UvrB/uvrC motif ND443_05380 PF12344 Ultra-violet resistance protein B ND443_05380 PF17757 UvrB interaction domain ND443_05385 PF09905 DNA-binding protein VF530 ND443_05400 PF01032 FecCD transport family ND443_05405 PF00005 ABC transporter ND443_05410 PF01933 Uncharacterised protein family UPF0052 ND443_05415 PF04055 Radical SAM superfamily ND443_05415 PF06463 Molybdenum Cofactor Synthesis C ND443_05420 PF01967 MoaC family ND443_05425 PF02597 ThiS family ND443_05430 PF02391 MoaE protein ND443_05435 PF01027 Inhibitor of apoptosis-promoting Bax1 ND443_05450 PF00005 ABC transporter ND443_05455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND443_05460 PF09209 Tetracyclin repressor-like, C-terminal domain ND443_05460 PF00440 Bacterial regulatory proteins, tetR family ND443_05465 PF00271 Helicase conserved C-terminal domain ND443_05465 PF00270 DEAD/DEAH box helicase ND443_05470 PF01207 Dihydrouridine synthase (Dus) ND443_05480 PF00768 D-alanyl-D-alanine carboxypeptidase ND443_05485 PF01565 FAD binding domain ND443_05485 PF09330 D-lactate dehydrogenase, membrane binding ND443_05490 PF01928 CYTH domain ND443_05495 PF01844 HNH endonuclease ND443_05505 PF04226 Transglycosylase associated protein ND443_05510 PF00005 ABC transporter ND443_05520 PF00528 Binding-protein-dependent transport system inner membrane component ND443_05525 PF00528 Binding-protein-dependent transport system inner membrane component ND443_05530 PF07308 Protein of unknown function (DUF1456) ND443_05535 PF00581 Rhodanese-like domain ND443_05540 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND443_05545 PF00528 Binding-protein-dependent transport system inner membrane component ND443_05550 PF00005 ABC transporter ND443_05555 PF00528 Binding-protein-dependent transport system inner membrane component ND443_05560 PF13520 Amino acid permease ND443_05565 PF01276 Orn/Lys/Arg decarboxylase, major domain ND443_05565 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND443_05565 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND443_05575 PF00892 EamA-like transporter family ND443_05580 PF00267 Gram-negative porin ND443_05585 PF13307 Helicase C-terminal domain ND443_05585 PF06733 DEAD_2 ND443_05590 PF02885 Glycosyl transferase family, helical bundle domain ND443_05595 PF05971 RNA methyltransferase ND443_05600 PF00005 ABC transporter ND443_05605 PF00528 Binding-protein-dependent transport system inner membrane component ND443_05610 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND443_05615 PF00210 Ferritin-like domain ND443_05620 PF13649 Methyltransferase domain ND443_05625 PF00892 EamA-like transporter family ND443_05630 PF13505 Outer membrane protein beta-barrel domain ND443_05635 PF03448 MgtE intracellular N domain ND443_05635 PF00571 CBS domain ND443_05635 PF01769 Divalent cation transporter ND443_05640 PF16916 Dimerisation domain of Zinc Transporter ND443_05640 PF01545 Cation efflux family ND443_05645 PF00005 ABC transporter ND443_05645 PF12848 ABC transporter ND443_05650 PF00899 ThiF family ND443_05655 PF00994 Probable molybdopterin binding domain ND443_05655 PF03454 MoeA C-terminal region (domain IV) ND443_05655 PF03453 MoeA N-terminal region (domain I and II) ND443_05665 PF00756 Putative esterase ND443_05670 PF08240 Alcohol dehydrogenase GroES-like domain ND443_05670 PF00107 Zinc-binding dehydrogenase ND443_05675 PF03466 LysR substrate binding domain ND443_05675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_05680 PF06779 Uncharacterised MFS-type transporter YbfB ND443_05685 PF01227 GTP cyclohydrolase I ND443_05690 PF04235 Protein of unknown function (DUF418) ND443_05695 PF00356 Bacterial regulatory proteins, lacI family ND443_05700 PF13407 Periplasmic binding protein domain ND443_05705 PF00005 ABC transporter ND443_05710 PF02653 Branched-chain amino acid transport system / permease component ND443_05715 PF02698 DUF218 domain ND443_05720 PF03949 Malic enzyme, NAD binding domain ND443_05720 PF00390 Malic enzyme, N-terminal domain ND443_05730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_05730 PF03466 LysR substrate binding domain ND443_05735 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND443_05735 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ND443_05740 PF04172 LrgB-like family ND443_05745 PF03788 LrgA family ND443_05755 PF09334 tRNA synthetases class I (M) ND443_05755 PF01588 Putative tRNA binding domain ND443_05760 PF10609 NUBPL iron-transfer P-loop NTPase ND443_05765 PF00485 Phosphoribulokinase / Uridine kinase family ND443_05770 PF00692 dUTPase ND443_05775 PF05170 AsmA family ND443_05780 PF03606 C4-dicarboxylate anaerobic carrier ND443_05785 PF00571 CBS domain ND443_05785 PF03471 Transporter associated domain ND443_05785 PF03741 Integral membrane protein TerC family ND443_05790 PF00483 Nucleotidyl transferase ND443_05795 PF00483 Nucleotidyl transferase ND443_05800 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ND443_05800 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ND443_05810 PF01502 Phosphoribosyl-AMP cyclohydrolase ND443_05810 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ND443_05815 PF00977 Histidine biosynthesis protein ND443_05820 PF00977 Histidine biosynthesis protein ND443_05825 PF00117 Glutamine amidotransferase class-I ND443_05830 PF00475 Imidazoleglycerol-phosphate dehydratase ND443_05835 PF00155 Aminotransferase class I and II ND443_05840 PF00815 Histidinol dehydrogenase ND443_05845 PF01634 ATP phosphoribosyltransferase ND443_05845 PF08029 HisG, C-terminal domain ND443_05855 PF01370 NAD dependent epimerase/dehydratase family ND443_05860 PF00043 Glutathione S-transferase, C-terminal domain ND443_05860 PF13417 Glutathione S-transferase, N-terminal domain ND443_05875 PF01053 Cys/Met metabolism PLP-dependent enzyme ND443_05880 PF00291 Pyridoxal-phosphate dependent enzyme ND443_05880 PF00571 CBS domain ND443_05885 PF07943 Penicillin-binding protein 5, C-terminal domain ND443_05885 PF00768 D-alanyl-D-alanine carboxypeptidase ND443_05890 PF03315 Serine dehydratase beta chain ND443_05890 PF03313 Serine dehydratase alpha chain ND443_05900 PF00455 DeoR C terminal sensor domain ND443_05900 PF08220 DeoR-like helix-turn-helix domain ND443_05905 PF01791 DeoC/LacD family aldolase ND443_05910 PF01569 PAP2 superfamily ND443_05920 PF06826 Predicted Permease Membrane Region ND443_05920 PF02080 TrkA-C domain ND443_05925 PF00462 Glutaredoxin ND443_05930 PF07214 Protein of unknown function (DUF1418) ND443_05935 PF10722 Putative bacterial sensory transduction regulator ND443_05940 PF13416 Bacterial extracellular solute-binding protein ND443_05945 PF00005 ABC transporter ND443_05945 PF08402 TOBE domain ND443_05950 PF00528 Binding-protein-dependent transport system inner membrane component ND443_05955 PF00528 Binding-protein-dependent transport system inner membrane component ND443_05960 PF10767 Protein of unknown function (DUF2593) ND443_05965 PF05958 tRNA (Uracil-5-)-methyltransferase ND443_05970 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND443_05975 PF00528 Binding-protein-dependent transport system inner membrane component ND443_05980 PF00528 Binding-protein-dependent transport system inner membrane component ND443_05985 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND443_05990 PF00005 ABC transporter ND443_05995 PF12883 Protein of unknown function (DUF3828) ND443_06000 PF01906 Putative heavy-metal-binding ND443_06005 PF01370 NAD dependent epimerase/dehydratase family ND443_06010 PF11066 Protein of unknown function (DUF2867) ND443_06010 PF13460 NAD(P)H-binding ND443_06015 PF01212 Beta-eliminating lyase ND443_06020 PF00970 Oxidoreductase FAD-binding domain ND443_06020 PF00111 2Fe-2S iron-sulfur cluster binding domain ND443_06020 PF00175 Oxidoreductase NAD-binding domain ND443_06025 PF03063 Prismane/CO dehydrogenase family ND443_06030 PF03956 Lysine exporter LysO ND443_06035 PF11398 Protein of unknown function (DUF2813) ND443_06040 PF04393 Protein of unknown function (DUF535) ND443_06045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND443_06050 PF00005 ABC transporter ND443_06050 PF02687 FtsX-like permease family ND443_06050 PF12704 MacB-like periplasmic core domain ND443_06055 PF00313 'Cold-shock' DNA-binding domain ND443_06060 PF02617 ATP-dependent Clp protease adaptor protein ClpS ND443_06065 PF17871 AAA lid domain ND443_06065 PF10431 C-terminal, D2-small domain, of ClpB protein ND443_06065 PF07724 AAA domain (Cdc48 subfamily) ND443_06065 PF00004 ATPase family associated with various cellular activities (AAA) ND443_06065 PF02861 Clp amino terminal domain, pathogenicity island component ND443_06070 PF01176 Translation initiation factor 1A / IF-1 ND443_06075 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ND443_06080 PF00664 ABC transporter transmembrane region ND443_06080 PF00005 ABC transporter ND443_06085 PF00664 ABC transporter transmembrane region ND443_06085 PF00005 ABC transporter ND443_06090 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND443_06095 PF01037 Lrp/AsnC ligand binding domain ND443_06100 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND443_06100 PF17854 FtsK alpha domain ND443_06100 PF09397 Ftsk gamma domain ND443_06100 PF01580 FtsK/SpoIIIE family ND443_06105 PF03548 Outer membrane lipoprotein carrier protein LolA ND443_06110 PF00004 ATPase family associated with various cellular activities (AAA) ND443_06110 PF16193 AAA C-terminal domain ND443_06110 PF12002 MgsA AAA+ ATPase C terminal ND443_06115 PF02403 Seryl-tRNA synthetase N-terminal domain ND443_06115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND443_06120 PF07690 Major Facilitator Superfamily ND443_06125 PF04055 Radical SAM superfamily ND443_06130 PF01228 Glycine radical ND443_06130 PF02901 Pyruvate formate lyase-like ND443_06135 PF01226 Formate/nitrite transporter ND443_06140 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ND443_06140 PF18381 YcaO cyclodehydratase C-terminal domain ND443_06145 PF00710 Asparaginase, N-terminal ND443_06145 PF17763 Glutaminase/Asparaginase C-terminal domain ND443_06150 PF00266 Aminotransferase class-V ND443_06155 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND443_06160 PF02224 Cytidylate kinase ND443_06165 PF00575 S1 RNA binding domain ND443_06170 PF00216 Bacterial DNA-binding protein ND443_06175 PF03772 Competence protein ND443_06175 PF00753 Metallo-beta-lactamase superfamily ND443_06180 PF00005 ABC transporter ND443_06180 PF00664 ABC transporter transmembrane region ND443_06185 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ND443_06190 PF07063 Domain of unknown function (DUF1338) ND443_06195 PF00313 'Cold-shock' DNA-binding domain ND443_06200 PF00313 'Cold-shock' DNA-binding domain ND443_06205 PF03966 Trm112p-like protein ND443_06210 PF02348 Cytidylyltransferase ND443_06215 PF01636 Phosphotransferase enzyme family ND443_06220 PF02698 DUF218 domain ND443_06225 PF13847 Methyltransferase domain ND443_06230 PF17193 MukF C-terminal domain ND443_06230 PF03882 MukF winged-helix domain ND443_06230 PF17192 MukF middle domain ND443_06235 PF04288 MukE-like family ND443_06240 PF16330 MukB hinge domain ND443_06240 PF04310 MukB N-terminal ND443_06245 PF03734 L,D-transpeptidase catalytic domain ND443_06245 PF01471 Putative peptidoglycan binding domain ND443_06250 PF05951 Bacterial protein of unknown function (DUF882) ND443_06255 PF00753 Metallo-beta-lactamase superfamily ND443_06260 PF00155 Aminotransferase class I and II ND443_06265 PF00267 Gram-negative porin ND443_06270 PF00152 tRNA synthetases class II (D, K and N) ND443_06270 PF01336 OB-fold nucleic acid binding domain ND443_06275 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ND443_06275 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ND443_06280 PF01433 Peptidase family M1 domain ND443_06280 PF11940 Domain of unknown function (DUF3458) Ig-like fold ND443_06280 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ND443_06285 PF01180 Dihydroorotate dehydrogenase ND443_06290 PF07126 Cell-division protein ZapC ND443_06295 PF00111 2Fe-2S iron-sulfur cluster binding domain ND443_06295 PF03473 MOSC domain ND443_06295 PF03476 MOSC N-terminal beta barrel domain ND443_06300 PF10672 S-adenosylmethionine-dependent methyltransferase ND443_06300 PF02926 THUMP domain ND443_06300 PF01170 Putative RNA methylase family UPF0020 ND443_06305 PF16326 ABC transporter C-terminal domain ND443_06305 PF12848 ABC transporter ND443_06305 PF00005 ABC transporter ND443_06310 PF04403 Paraquat-inducible protein A ND443_06315 PF02470 MlaD protein ND443_06320 PF03886 ABC-type transport auxiliary lipoprotein component ND443_06325 PF04957 Ribosome modulation factor ND443_06330 PF07977 FabA-like domain ND443_06335 PF13654 AAA domain ND443_06335 PF05362 Lon protease (S16) C-terminal proteolytic domain ND443_06340 PF06303 MatP N-terminal domain ND443_06340 PF17414 MatP C-terminal ribbon-helix-helix domain ND443_06345 PF00691 OmpA family ND443_06345 PF01389 OmpA-like transmembrane domain ND443_06350 PF03846 Cell division inhibitor SulA ND443_06355 PF04994 TfoX C-terminal domain ND443_06355 PF04993 TfoX N-terminal domain ND443_06360 PF12805 FUSC-like inner membrane protein yccS ND443_06365 PF03733 Inner membrane component domain ND443_06370 PF12462 DNA helicase IV / RNA helicase N terminal ND443_06370 PF00580 UvrD/REP helicase N-terminal domain ND443_06370 PF13361 UvrD-like helicase C-terminal domain ND443_06375 PF02142 MGS-like domain ND443_06380 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ND443_06385 PF13380 CoA binding domain ND443_06390 PF08755 Hemimethylated DNA-binding protein YccV like ND443_06395 PF10672 S-adenosylmethionine-dependent methyltransferase ND443_06395 PF17785 PUA-like domain ND443_06400 PF00708 Acylphosphatase ND443_06405 PF04358 DsrC like protein ND443_06415 PF00484 Carbonic anhydrase ND443_06420 PF03471 Transporter associated domain ND443_06420 PF02080 TrkA-C domain ND443_06420 PF00999 Sodium/hydrogen exchanger family ND443_06430 PF01757 Acyltransferase family ND443_06435 PF04349 Periplasmic glucan biosynthesis protein, MdoG ND443_06440 PF00535 Glycosyl transferase family 2 ND443_06450 PF01797 Transposase IS200 like ND443_06455 PF07282 Putative transposase DNA-binding domain ND443_06455 PF01385 Probable transposase ND443_06455 PF12323 Helix-turn-helix domain ND443_06460 PF00854 POT family ND443_06470 PF03279 Bacterial lipid A biosynthesis acyltransferase ND443_06475 PF00581 Rhodanese-like domain ND443_06475 PF12368 Rhodanase C-terminal ND443_06475 PF17773 UPF0176 acylphosphatase like domain ND443_06480 PF01594 AI-2E family transporter ND443_06485 PF00196 Bacterial regulatory proteins, luxR family ND443_06490 PF01266 FAD dependent oxidoreductase ND443_06495 PF13991 BssS protein family ND443_06500 PF06183 DinI-like family ND443_06505 PF01979 Amidohydrolase family ND443_06510 PF03992 Antibiotic biosynthesis monooxygenase ND443_06520 PF00575 S1 RNA binding domain ND443_06520 PF12111 Polyribonucleotide phosphorylase C terminal ND443_06520 PF10150 Ribonuclease E/G family ND443_06525 PF00849 RNA pseudouridylate synthase ND443_06525 PF01479 S4 domain ND443_06530 PF02545 Maf-like protein ND443_06535 PF02620 Large ribosomal RNA subunit accumulation protein YceD ND443_06540 PF01783 Ribosomal L32p protein family ND443_06545 PF02504 Fatty acid synthesis protein ND443_06550 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ND443_06550 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ND443_06555 PF00698 Acyl transferase domain ND443_06565 PF00550 Phosphopantetheine attachment site ND443_06570 PF00109 Beta-ketoacyl synthase, N-terminal domain ND443_06570 PF02801 Beta-ketoacyl synthase, C-terminal domain ND443_06575 PF01063 Amino-transferase class IV ND443_06580 PF02618 YceG-like family ND443_06585 PF02223 Thymidylate kinase ND443_06590 PF09115 DNA polymerase III, delta subunit, C terminal ND443_06595 PF01026 TatD related DNase ND443_06600 PF02378 Phosphotransferase system, EIIC ND443_06600 PF00367 phosphotransferase system, EIIB ND443_06605 PF01230 HIT domain ND443_06610 PF07233 Protein of unknown function (DUF1425) ND443_06615 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND443_06615 PF13036 Peptidoglycan-synthase activator LpoB ND443_06620 PF01636 Phosphotransferase enzyme family ND443_06625 PF00933 Glycosyl hydrolase family 3 N terminal domain ND443_06630 PF05728 Uncharacterised protein family (UPF0227) ND443_06635 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND443_06640 PF05433 Glycine zipper 2TM domain ND443_06645 PF00271 Helicase conserved C-terminal domain ND443_06645 PF02559 CarD-like/TRCF domain ND443_06645 PF17757 UvrB interaction domain ND443_06645 PF00270 DEAD/DEAH box helicase ND443_06645 PF03461 TRCF domain ND443_06650 PF02687 FtsX-like permease family ND443_06650 PF12704 MacB-like periplasmic core domain ND443_06655 PF00005 ABC transporter ND443_06660 PF02687 FtsX-like permease family ND443_06660 PF12704 MacB-like periplasmic core domain ND443_06665 PF00480 ROK family ND443_06670 PF02146 Sir2 family ND443_06675 PF07687 Peptidase dimerisation domain ND443_06675 PF01546 Peptidase family M20/M25/M40 ND443_06680 PF08007 Cupin superfamily protein ND443_06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_06685 PF08918 PhoQ Sensor ND443_06690 PF00072 Response regulator receiver domain ND443_06690 PF00486 Transcriptional regulatory protein, C terminal ND443_06700 PF08328 Adenylosuccinate lyase C-terminal ND443_06700 PF00206 Lyase ND443_06705 PF04356 Protein of unknown function (DUF489) ND443_06715 PF00293 NUDIX domain ND443_06720 PF00849 RNA pseudouridylate synthase ND443_06725 PF00180 Isocitrate/isopropylmalate dehydrogenase ND443_06730 PF00196 Bacterial regulatory proteins, luxR family ND443_06730 PF03472 Autoinducer binding domain ND443_06735 PF00765 Autoinducer synthase ND443_06740 PF00232 Glycosyl hydrolase family 1 ND443_06750 PF01432 Peptidase family M3 ND443_06755 PF00672 HAMP domain ND443_06755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND443_06755 PF02203 Tar ligand binding domain homologue ND443_06775 PF01797 Transposase IS200 like ND443_06780 PF07282 Putative transposase DNA-binding domain ND443_06780 PF01385 Probable transposase ND443_06780 PF12323 Helix-turn-helix domain ND443_06790 PF00072 Response regulator receiver domain ND443_06795 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND443_06795 PF17203 Single cache domain 3 ND443_06795 PF00989 PAS fold ND443_06795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_06800 PF00939 Sodium:sulfate symporter transmembrane region ND443_06805 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ND443_06805 PF00413 Matrixin ND443_06805 PF08548 Peptidase M10 serralysin C terminal ND443_06810 PF02974 Protease inhibitor Inh ND443_06815 PF00664 ABC transporter transmembrane region ND443_06815 PF00005 ABC transporter ND443_06820 PF00529 HlyD membrane-fusion protein of T1SS ND443_06825 PF02321 Outer membrane efflux protein ND443_06840 PF02311 AraC-like ligand binding domain ND443_06840 PF12833 Helix-turn-helix domain ND443_06845 PF02562 PhoH-like protein ND443_06850 PF01699 Sodium/calcium exchanger protein ND443_06855 PF08021 Siderophore-interacting FAD-binding domain ND443_06855 PF04954 Siderophore-interacting protein ND443_06860 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ND443_06860 PF07730 Histidine kinase ND443_06860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_06860 PF00672 HAMP domain ND443_06870 PF02322 Cytochrome bd terminal oxidase subunit II ND443_06875 PF01654 Cytochrome bd terminal oxidase subunit I ND443_06880 PF00155 Aminotransferase class I and II ND443_06880 PF00392 Bacterial regulatory proteins, gntR family ND443_06885 PF00202 Aminotransferase class-III ND443_06890 PF04958 Arginine N-succinyltransferase beta subunit ND443_06895 PF00171 Aldehyde dehydrogenase family ND443_06900 PF04996 Succinylarginine dihydrolase ND443_06910 PF00267 Gram-negative porin ND443_06920 PF01979 Amidohydrolase family ND443_06925 PF00392 Bacterial regulatory proteins, gntR family ND443_06925 PF07702 UTRA domain ND443_06930 PF01979 Amidohydrolase family ND443_06935 PF05962 HutD ND443_06940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_06940 PF03466 LysR substrate binding domain ND443_06950 PF03824 High-affinity nickel-transport protein ND443_06955 PF00708 Acylphosphatase ND443_06955 PF17788 HypF Kae1-like domain ND443_06955 PF07503 HypF finger ND443_06955 PF01300 Telomere recombination ND443_06960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND443_06960 PF00384 Molybdopterin oxidoreductase ND443_06960 PF01568 Molydopterin dinucleotide binding domain ND443_06965 PF13247 4Fe-4S dicluster domain ND443_06965 PF12800 4Fe-4S binding domain ND443_06970 PF01750 Hydrogenase maturation protease ND443_06975 PF07450 Formate hydrogenlyase maturation protein HycH ND443_06980 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND443_06985 PF12838 4Fe-4S dicluster domain ND443_06990 PF00374 Nickel-dependent hydrogenase ND443_06990 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND443_06990 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND443_06995 PF00146 NADH dehydrogenase ND443_07000 PF00361 Proton-conducting membrane transporter ND443_07005 PF13247 4Fe-4S dicluster domain ND443_07010 PF11046 Transcriptional repressor of hyc and hyp operons ND443_07015 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ND443_07020 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND443_07025 PF01455 HupF/HypC family ND443_07030 PF01924 Hydrogenase formation hypA family ND443_07035 PF00586 AIR synthase related protein, N-terminal domain ND443_07035 PF02769 AIR synthase related protein, C-terminal domain ND443_07040 PF02954 Bacterial regulatory protein, Fis family ND443_07040 PF00158 Sigma-54 interaction domain ND443_07040 PF01590 GAF domain ND443_07050 PF13954 PapC N-terminal domain ND443_07050 PF00577 Outer membrane usher protein ND443_07055 PF02753 Pili assembly chaperone PapD, C-terminal domain ND443_07055 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND443_07070 PF12833 Helix-turn-helix domain ND443_07075 PF01926 50S ribosome-binding GTPase ND443_07075 PF06071 Protein of unknown function (DUF933) ND443_07085 PF01195 Peptidyl-tRNA hydrolase ND443_07090 PF10762 Protein of unknown function (DUF2583) ND443_07095 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ND443_07095 PF14572 Phosphoribosyl synthetase-associated domain ND443_07100 PF08544 GHMP kinases C terminal ND443_07100 PF00288 GHMP kinases N terminal domain ND443_07105 PF03550 Outer membrane lipoprotein LolB ND443_07110 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ND443_07110 PF01488 Shikimate / quinate 5-dehydrogenase ND443_07110 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ND443_07115 PF03462 PCRF domain ND443_07115 PF00472 RF-1 domain ND443_07120 PF17827 PrmC N-terminal domain ND443_07120 PF13847 Methyltransferase domain ND443_07125 PF04247 Invasion gene expression up-regulator, SirB ND443_07130 PF13369 Transglutaminase-like superfamily ND443_07135 PF00793 DAHP synthetase I family ND443_07140 PF01740 STAS domain ND443_07140 PF00916 Sulfate permease family ND443_07145 PF00990 Diguanylate cyclase, GGDEF domain ND443_07155 PF03009 Glycerophosphoryl diester phosphodiesterase family ND443_07165 PF00854 POT family ND443_07170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND443_07175 PF02811 PHP domain ND443_07180 PF02613 Nitrate reductase delta subunit ND443_07185 PF07273 Protein of unknown function (DUF1439) ND443_07195 PF07690 Major Facilitator Superfamily ND443_07200 PF13302 Acetyltransferase (GNAT) domain ND443_07205 PF04337 Protein of unknown function, DUF480 ND443_07210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND443_07215 PF03023 Lipid II flippase MurJ ND443_07220 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND443_07220 PF17287 POTRA domain ND443_07220 PF08479 POTRA domain, ShlB-type ND443_07225 PF13332 Hemagglutinin repeat ND443_07225 PF05860 haemagglutination activity domain ND443_07235 PF03485 Arginyl tRNA synthetase N terminal domain ND443_07235 PF05746 DALR anticodon binding domain ND443_07235 PF00750 tRNA synthetases class I (R) ND443_07240 PF06185 YecM protein ND443_07245 PF03932 CutC family ND443_07250 PF08003 Protein of unknown function (DUF1698) ND443_07255 PF13649 Methyltransferase domain ND443_07260 PF01124 MAPEG family ND443_07265 PF01904 Protein of unknown function DUF72 ND443_07275 PF02938 GAD domain ND443_07275 PF00152 tRNA synthetases class II (D, K and N) ND443_07275 PF01336 OB-fold nucleic acid binding domain ND443_07280 PF00293 NUDIX domain ND443_07285 PF01709 Transcriptional regulator ND443_07290 PF02075 Crossover junction endodeoxyribonuclease RuvC ND443_07295 PF07499 RuvA, C-terminal domain ND443_07295 PF01330 RuvA N terminal domain ND443_07300 PF05491 RuvB C-terminal winged helix domain ND443_07300 PF05496 Holliday junction DNA helicase RuvB P-loop domain ND443_07300 PF17864 RuvB AAA lid domain ND443_07305 PF00854 POT family ND443_07310 PF00950 ABC 3 transport family ND443_07315 PF00005 ABC transporter ND443_07320 PF01297 Zinc-uptake complex component A periplasmic ND443_07325 PF01476 LysM domain ND443_07325 PF08525 Opacity-associated protein A N-terminal motif ND443_07325 PF01551 Peptidase family M23 ND443_07330 PF03279 Bacterial lipid A biosynthesis acyltransferase ND443_07335 PF02887 Pyruvate kinase, alpha/beta domain ND443_07335 PF00224 Pyruvate kinase, barrel domain ND443_07340 PF01418 Helix-turn-helix domain, rpiR family ND443_07340 PF01380 SIS domain ND443_07345 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ND443_07345 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ND443_07350 PF01081 KDPG and KHG aldolase ND443_07355 PF00893 Small Multidrug Resistance protein ND443_07360 PF00893 Small Multidrug Resistance protein ND443_07365 PF01042 Endoribonuclease L-PSP ND443_07370 PF04851 Type III restriction enzyme, res subunit ND443_07370 PF13307 Helicase C-terminal domain ND443_07375 PF00814 Glycoprotease family ND443_07380 PF03843 Outer membrane lipoprotein Slp family ND443_07385 PF13193 AMP-binding enzyme C-terminal domain ND443_07385 PF00501 AMP-binding enzyme ND443_07390 PF00570 HRDC domain ND443_07390 PF01612 3'-5' exonuclease ND443_07395 PF03776 Septum formation topological specificity factor MinE ND443_07400 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ND443_07405 PF03775 Septum formation inhibitor MinC, C-terminal domain ND443_07405 PF05209 Septum formation inhibitor MinC, N-terminal domain ND443_07410 PF05166 YcgL domain ND443_07415 PF01557 Fumarylacetoacetate (FAA) hydrolase family ND443_07420 PF03692 Putative zinc- or iron-chelating domain ND443_07435 PF02600 Disulfide bond formation protein DsbB ND443_07440 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ND443_07445 PF00392 Bacterial regulatory proteins, gntR family ND443_07445 PF07840 FadR C-terminal domain ND443_07450 PF04293 SpoVR like protein ND443_07455 PF01266 FAD dependent oxidoreductase ND443_07460 PF00842 Alanine racemase, C-terminal domain ND443_07460 PF01168 Alanine racemase, N-terminal domain ND443_07465 PF07690 Major Facilitator Superfamily ND443_07475 PF00563 EAL domain ND443_07475 PF00990 Diguanylate cyclase, GGDEF domain ND443_07475 PF13426 PAS domain ND443_07480 PF03466 LysR substrate binding domain ND443_07480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_07485 PF03306 Alpha-acetolactate decarboxylase ND443_07490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND443_07490 PF00205 Thiamine pyrophosphate enzyme, central domain ND443_07490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND443_07495 PF04285 Protein of unknown function (DUF444) ND443_07500 PF06798 PrkA serine protein kinase C-terminal domain ND443_07500 PF08298 PrkA AAA domain ND443_07510 PF06629 MltA-interacting protein MipA ND443_07515 PF00884 Sulfatase ND443_07520 PF01263 Aldose 1-epimerase ND443_07525 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND443_07525 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND443_07530 PF01641 SelR domain ND443_07535 PF07023 Protein of unknown function (DUF1315) ND443_07540 PF00857 Isochorismatase family ND443_07545 PF00710 Asparaginase, N-terminal ND443_07545 PF17763 Glutaminase/Asparaginase C-terminal domain ND443_07550 PF01343 Peptidase family S49 ND443_07555 PF00881 Nitroreductase family ND443_07560 PF02769 AIR synthase related protein, C-terminal domain ND443_07560 PF00586 AIR synthase related protein, N-terminal domain ND443_07565 PF01751 Toprim domain ND443_07565 PF01131 DNA topoisomerase ND443_07570 PF07383 Protein of unknown function (DUF1496) ND443_07575 PF00293 NUDIX domain ND443_07580 PF03372 Endonuclease/Exonuclease/phosphatase family ND443_07590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_07590 PF03466 LysR substrate binding domain ND443_07610 PF01842 ACT domain ND443_07610 PF00551 Formyl transferase ND443_07615 PF02810 SEC-C motif ND443_07620 PF01734 Patatin-like phospholipase ND443_07625 PF00072 Response regulator receiver domain ND443_07630 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND443_07630 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND443_07630 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND443_07635 PF00816 H-NS histone family ND443_07640 PF00265 Thymidine kinase ND443_07645 PF00465 Iron-containing alcohol dehydrogenase ND443_07645 PF00171 Aldehyde dehydrogenase family ND443_07655 PF01914 MarC family integral membrane protein ND443_07660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND443_07665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND443_07670 PF00528 Binding-protein-dependent transport system inner membrane component ND443_07675 PF00528 Binding-protein-dependent transport system inner membrane component ND443_07675 PF12911 N-terminal TM domain of oligopeptide transport permease C ND443_07680 PF00005 ABC transporter ND443_07680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND443_07685 PF00005 ABC transporter ND443_07685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND443_07690 PF04269 Protein of unknown function, DUF440 ND443_07695 PF13091 PLD-like domain ND443_07695 PF13396 Phospholipase_D-nuclease N-terminal ND443_07715 PF03795 YCII-related domain ND443_07730 PF00486 Transcriptional regulatory protein, C terminal ND443_07740 PF02753 Pili assembly chaperone PapD, C-terminal domain ND443_07740 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND443_07745 PF13953 PapC C-terminal domain ND443_07745 PF13954 PapC N-terminal domain ND443_07745 PF00577 Outer membrane usher protein ND443_07765 PF03544 Gram-negative bacterial TonB protein C-terminal ND443_07770 PF03061 Thioesterase superfamily ND443_07775 PF04279 Intracellular septation protein A ND443_07780 PF00916 Sulfate permease family ND443_07780 PF01740 STAS domain ND443_07790 PF03692 Putative zinc- or iron-chelating domain ND443_07795 PF03922 OmpW family ND443_07805 PF00290 Tryptophan synthase alpha chain ND443_07810 PF00291 Pyridoxal-phosphate dependent enzyme ND443_07815 PF00218 Indole-3-glycerol phosphate synthase ND443_07815 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ND443_07820 PF02885 Glycosyl transferase family, helical bundle domain ND443_07820 PF00591 Glycosyl transferase family, a/b domain ND443_07825 PF00117 Glutamine amidotransferase class-I ND443_07830 PF04715 Anthranilate synthase component I, N terminal region ND443_07830 PF00425 chorismate binding enzyme ND443_07835 PF02811 PHP domain ND443_07840 PF01300 Telomere recombination ND443_07860 PF00849 RNA pseudouridylate synthase ND443_07860 PF01479 S4 domain ND443_07865 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ND443_07870 PF00106 short chain dehydrogenase ND443_07875 PF01343 Peptidase family S49 ND443_07875 PF08496 Peptidase family S49 N-terminal ND443_07880 PF10692 Protein of unknown function (DUF2498) ND443_07885 PF08272 Topoisomerase I zinc-ribbon-like ND443_07885 PF01131 DNA topoisomerase ND443_07885 PF01751 Toprim domain ND443_07885 PF01396 Topoisomerase DNA binding C4 zinc finger ND443_07890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_07890 PF03466 LysR substrate binding domain ND443_07905 PF00330 Aconitase family (aconitate hydratase) ND443_07905 PF00694 Aconitase C-terminal domain ND443_07910 PF00925 GTP cyclohydrolase II ND443_07915 PF01569 PAP2 superfamily ND443_07920 PF06305 Lipopolysaccharide assembly protein A domain ND443_07925 PF18073 Rubredoxin metal binding domain ND443_07935 PF07338 Protein of unknown function (DUF1471) ND443_07940 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND443_07945 PF01253 Translation initiation factor SUI1 ND443_07950 PF05433 Glycine zipper 2TM domain ND443_07955 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND443_07960 PF00563 EAL domain ND443_07960 PF00990 Diguanylate cyclase, GGDEF domain ND443_07960 PF05231 MASE1 ND443_07960 PF08447 PAS fold ND443_07960 PF08448 PAS fold ND443_07960 PF13426 PAS domain ND443_07965 PF00575 S1 RNA binding domain ND443_07965 PF08206 Ribonuclease B OB domain ND443_07965 PF00773 RNB domain ND443_07970 PF00633 Helix-hairpin-helix motif ND443_07970 PF00730 HhH-GPD superfamily base excision DNA repair protein ND443_07970 PF10576 Iron-sulfur binding domain of endonuclease III ND443_07975 PF02508 Rnf-Nqr subunit, membrane protein ND443_07980 PF04205 FMN-binding domain ND443_07985 PF03116 NQR2, RnfD, RnfE family ND443_07990 PF06445 GyrI-like small molecule binding domain ND443_07990 PF12833 Helix-turn-helix domain ND443_07995 PF13375 RnfC Barrel sandwich hybrid domain ND443_07995 PF13237 4Fe-4S dicluster domain ND443_07995 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND443_07995 PF10531 SLBB domain ND443_08000 PF04060 Putative Fe-S cluster ND443_08005 PF02508 Rnf-Nqr subunit, membrane protein ND443_08010 PF10754 Protein of unknown function (DUF2569) ND443_08015 PF01268 Formate--tetrahydrofolate ligase ND443_08020 PF09313 Domain of unknown function (DUF1971) ND443_08020 PF03848 Tellurite resistance protein TehB ND443_08025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND443_08025 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ND443_08030 PF13593 SBF-like CPA transporter family (DUF4137) ND443_08035 PF00962 Adenosine/AMP deaminase ND443_08040 PF06097 Bacterial protein of unknown function (DUF945) ND443_08045 PF01238 Phosphomannose isomerase type I ND443_08050 PF00206 Lyase ND443_08050 PF10415 Fumarase C C-terminus ND443_08055 PF05472 DNA replication terminus site-binding protein (Ter protein) ND443_08060 PF00480 ROK family ND443_08070 PF00654 Voltage gated chloride channel ND443_08075 PF06649 Protein of unknown function (DUF1161) ND443_08080 PF06932 Protein of unknown function (DUF1283) ND443_08085 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ND443_08090 PF00106 short chain dehydrogenase ND443_08095 PF01510 N-acetylmuramoyl-L-alanine amidase ND443_08115 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ND443_08115 PF01048 Phosphorylase superfamily ND443_08155 PF13419 Haloacid dehalogenase-like hydrolase ND443_08165 PF06445 GyrI-like small molecule binding domain ND443_08170 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ND443_08170 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND443_08175 PF13545 Crp-like helix-turn-helix domain ND443_08175 PF00027 Cyclic nucleotide-binding domain ND443_08180 PF00582 Universal stress protein family ND443_08190 PF00455 DeoR C terminal sensor domain ND443_08190 PF08220 DeoR-like helix-turn-helix domain ND443_08195 PF03611 PTS system sugar-specific permease component ND443_08200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND443_08205 PF00596 Class II Aldolase and Adducin N-terminal domain ND443_08210 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND443_08215 PF01261 Xylose isomerase-like TIM barrel ND443_08220 PF02233 NAD(P) transhydrogenase beta subunit ND443_08225 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ND443_08225 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ND443_08225 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ND443_08230 PF07338 Protein of unknown function (DUF1471) ND443_08235 PF13520 Amino acid permease ND443_08245 PF00072 Response regulator receiver domain ND443_08245 PF00486 Transcriptional regulatory protein, C terminal ND443_08250 PF00672 HAMP domain ND443_08250 PF00512 His Kinase A (phospho-acceptor) domain ND443_08250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_08255 PF00080 Copper/zinc superoxide dismutase (SODC) ND443_08260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND443_08265 PF12833 Helix-turn-helix domain ND443_08270 PF01161 Phosphatidylethanolamine-binding protein ND443_08275 PF06392 Acid shock protein repeat ND443_08280 PF00089 Trypsin ND443_08285 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ND443_08285 PF00271 Helicase conserved C-terminal domain ND443_08285 PF11898 Domain of unknown function (DUF3418) ND443_08285 PF00270 DEAD/DEAH box helicase ND443_08285 PF04408 Helicase associated domain (HA2) ND443_08290 PF02525 Flavodoxin-like fold ND443_08295 PF07027 Protein of unknown function (DUF1318) ND443_08300 PF13617 YnbE-like lipoprotein ND443_08310 PF11739 Dicarboxylate transport ND443_08315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND443_08315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND443_08320 PF03724 META domain ND443_08325 PF03891 Domain of unknown function (DUF333) ND443_08330 PF02308 MgtC family ND443_08335 PF00893 Small Multidrug Resistance protein ND443_08340 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ND443_08340 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ND443_08340 PF10371 Domain of unknown function ND443_08340 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ND443_08340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND443_08345 PF01171 PP-loop family ND443_08350 PF01544 CorA-like Mg2+ transporter protein ND443_08355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND443_08360 PF00246 Zinc carboxypeptidase ND443_08365 PF13378 Enolase C-terminal domain-like ND443_08365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ND443_08370 PF08534 Redoxin ND443_08375 PF18024 Helix-turn-helix domain ND443_08375 PF00158 Sigma-54 interaction domain ND443_08380 PF09722 Protein of unknown function (DUF2384) ND443_08385 PF08808 RES domain ND443_08390 PF05128 Domain of unknown function (DUF697) ND443_08395 PF04317 YcjX-like family, DUF463 ND443_08400 PF09584 Phage shock protein PspD (Phageshock_PspD) ND443_08405 PF04024 PspC domain ND443_08410 PF06667 Phage shock protein B ND443_08415 PF04012 PspA/IM30 family ND443_08420 PF02954 Bacterial regulatory protein, Fis family ND443_08420 PF00158 Sigma-54 interaction domain ND443_08430 PF02917 Pertussis toxin, subunit 1 ND443_08435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND443_08440 PF00528 Binding-protein-dependent transport system inner membrane component ND443_08445 PF12911 N-terminal TM domain of oligopeptide transport permease C ND443_08445 PF00528 Binding-protein-dependent transport system inner membrane component ND443_08450 PF00005 ABC transporter ND443_08450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND443_08455 PF00005 ABC transporter ND443_08465 PF00854 POT family ND443_08475 PF00226 DnaJ domain ND443_08475 PF01556 DnaJ C terminal domain ND443_08485 PF04893 Yip1 domain ND443_08495 PF11656 YjbD family (DUF3811) ND443_08500 PF00043 Glutathione S-transferase, C-terminal domain ND443_08500 PF02798 Glutathione S-transferase, N-terminal domain ND443_08505 PF08543 Phosphomethylpyrimidine kinase ND443_08510 PF01479 S4 domain ND443_08510 PF00579 tRNA synthetases class I (W and Y) ND443_08515 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ND443_08515 PF01243 Pyridoxamine 5'-phosphate oxidase ND443_08520 PF03702 Anhydro-N-acetylmuramic acid kinase ND443_08525 PF05433 Glycine zipper 2TM domain ND443_08530 PF01047 MarR family ND443_08540 PF00248 Aldo/keto reductase family ND443_08545 PF06945 Protein of unknown function (DUF1289) ND443_08550 PF08019 Phosphoethanolamine transferase EptA/EptB ND443_08550 PF00884 Sulfatase ND443_08555 PF16925 Tetracyclin repressor-like, C-terminal domain ND443_08555 PF00440 Bacterial regulatory proteins, tetR family ND443_08560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND443_08565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND443_08570 PF00929 Exonuclease ND443_08575 PF00462 Glutaredoxin ND443_08580 PF00877 NlpC/P60 family ND443_08585 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND443_08585 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND443_08595 PF00356 Bacterial regulatory proteins, lacI family ND443_08600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_08600 PF03466 LysR substrate binding domain ND443_08605 PF07690 Major Facilitator Superfamily ND443_08615 PF00677 Lumazine binding domain ND443_08620 PF01554 MatE ND443_08640 PF02887 Pyruvate kinase, alpha/beta domain ND443_08640 PF00224 Pyruvate kinase, barrel domain ND443_08645 PF04728 Lipoprotein leucine-zipper ND443_08650 PF03734 L,D-transpeptidase catalytic domain ND443_08650 PF17969 L,D-transpeptidase C-terminal domain ND443_08650 PF01476 LysM domain ND443_08655 PF02657 Fe-S metabolism associated domain ND443_08660 PF00266 Aminotransferase class-V ND443_08665 PF01458 Uncharacterized protein family (UPF0051) ND443_08670 PF00005 ABC transporter ND443_08675 PF01458 Uncharacterized protein family (UPF0051) ND443_08680 PF01521 Iron-sulphur cluster biosynthesis ND443_08685 PF03061 Thioesterase superfamily ND443_08690 PF02913 FAD linked oxidases, C-terminal domain ND443_08690 PF01565 FAD binding domain ND443_08690 PF13183 4Fe-4S dicluster domain ND443_08695 PF01594 AI-2E family transporter ND443_08705 PF00391 PEP-utilising enzyme, mobile domain ND443_08705 PF02896 PEP-utilising enzyme, TIM barrel domain ND443_08705 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ND443_08710 PF03618 Kinase/pyrophosphorylase ND443_08715 PF00793 DAHP synthetase I family ND443_08720 PF10636 Hemin uptake protein hemP ND443_08725 PF00593 TonB dependent receptor ND443_08725 PF07715 TonB-dependent Receptor Plug Domain ND443_08730 PF05171 Haemin-degrading HemS.ChuX domain ND443_08735 PF01497 Periplasmic binding protein ND443_08740 PF01032 FecCD transport family ND443_08745 PF00005 ABC transporter ND443_08750 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ND443_08755 PF10437 Bacterial lipoate protein ligase C-terminus ND443_08755 PF03099 Biotin/lipoate A/B protein ligase family ND443_08760 PF00877 NlpC/P60 family ND443_08770 PF00892 EamA-like transporter family ND443_08775 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ND443_08780 PF01522 Polysaccharide deacetylase ND443_08785 PF00551 Formyl transferase ND443_08785 PF02911 Formyl transferase, C-terminal domain ND443_08785 PF01370 NAD dependent epimerase/dehydratase family ND443_08790 PF00535 Glycosyl transferase family 2 ND443_08795 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND443_08800 PF00005 ABC transporter ND443_08805 PF01032 FecCD transport family ND443_08810 PF00145 C-5 cytosine-specific DNA methylase ND443_08810 PF13411 MerR HTH family regulatory protein ND443_08815 PF09553 Eco47II restriction endonuclease ND443_08850 PF02661 Fic/DOC family ND443_08865 PF05154 TM2 domain ND443_08870 PF00216 Bacterial DNA-binding protein ND443_08875 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ND443_08875 PF03147 Ferredoxin-fold anticodon binding domain ND443_08875 PF03484 tRNA synthetase B5 domain ND443_08875 PF03483 B3/4 domain ND443_08875 PF01588 Putative tRNA binding domain ND443_08880 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ND443_08880 PF01409 tRNA synthetases class II core domain (F) ND443_08885 PF00453 Ribosomal protein L20 ND443_08890 PF01632 Ribosomal protein L35 ND443_08895 PF00707 Translation initiation factor IF-3, C-terminal domain ND443_08895 PF05198 Translation initiation factor IF-3, N-terminal domain ND443_08900 PF02824 TGS domain ND443_08900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND443_08900 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND443_08900 PF03129 Anticodon binding domain ND443_08930 PF01914 MarC family integral membrane protein ND443_08935 PF01464 Transglycosylase SLT domain ND443_08940 PF01297 Zinc-uptake complex component A periplasmic ND443_08945 PF00005 ABC transporter ND443_08950 PF00950 ABC 3 transport family ND443_08955 PF00950 ABC 3 transport family ND443_08960 PF03881 Fructosamine kinase ND443_08965 PF14002 YniB-like protein ND443_08970 PF13419 Haloacid dehalogenase-like hydrolase ND443_08975 PF04307 LexA-binding, inner membrane-associated putative hydrolase ND443_08980 PF00375 Sodium:dicarboxylate symporter family ND443_08985 PF01510 N-acetylmuramoyl-L-alanine amidase ND443_08990 PF01614 Bacterial transcriptional regulator ND443_08990 PF09339 IclR helix-turn-helix domain ND443_08995 PF07690 Major Facilitator Superfamily ND443_09005 PF01435 Peptidase family M48 ND443_09010 PF17804 Tail specific protease N-terminal domain ND443_09010 PF00595 PDZ domain ND443_09010 PF11818 C-terminal domain of tail specific protease (DUF3340) ND443_09010 PF03572 Peptidase family S41 ND443_09015 PF17516 ProQ C-terminal domain ND443_09015 PF04352 ProQ/FINO family ND443_09020 PF13185 GAF domain ND443_09025 PF04403 Paraquat-inducible protein A ND443_09030 PF02470 MlaD protein ND443_09035 PF00563 EAL domain ND443_09035 PF01590 GAF domain ND443_09035 PF00990 Diguanylate cyclase, GGDEF domain ND443_09035 PF00360 Phytochrome region ND443_09040 PF07351 Protein of unknown function (DUF1480) ND443_09065 PF05643 Putative bacterial lipoprotein (DUF799) ND443_09075 PF03783 Curli production assembly/transport component CsgG ND443_09080 PF10753 Toxin GhoT_OrtT ND443_09100 PF00144 Beta-lactamase ND443_09245 PF00959 Phage lysozyme ND443_09250 PF04971 Bacteriophage P21 holin S ND443_09270 PF07102 Protein of unknown function (DUF1364) ND443_09280 PF05063 MT-A70 ND443_09285 PF01555 DNA methylase ND443_09295 PF17854 FtsK alpha domain ND443_09295 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND443_09295 PF09397 Ftsk gamma domain ND443_09295 PF01580 FtsK/SpoIIIE family ND443_09335 PF01381 Helix-turn-helix ND443_09335 PF00717 Peptidase S24-like ND443_09400 PF07825 Excisionase-like protein ND443_09410 PF10709 Protein of unknown function (DUF2511) ND443_09415 PF05425 Copper resistance protein D ND443_09420 PF04234 CopC domain ND443_09425 PF00210 Ferritin-like domain ND443_09430 PF06440 DNA polymerase III, theta subunit ND443_09435 PF00561 alpha/beta hydrolase fold ND443_09440 PF00929 Exonuclease ND443_09445 PF00326 Prolyl oligopeptidase family ND443_09445 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ND443_09450 PF13995 YebF-like protein ND443_09455 PF04266 ASCH domain ND443_09460 PF07130 YebG protein ND443_09465 PF03880 DbpA RNA binding domain ND443_09465 PF00270 DEAD/DEAH box helicase ND443_09465 PF00271 Helicase conserved C-terminal domain ND443_09470 PF02222 ATP-grasp domain ND443_09475 PF03701 Uncharacterised protein family (UPF0181) ND443_09480 PF00425 chorismate binding enzyme ND443_09480 PF04715 Anthranilate synthase component I, N terminal region ND443_09485 PF00293 NUDIX domain ND443_09490 PF03313 Serine dehydratase alpha chain ND443_09490 PF03315 Serine dehydratase beta chain ND443_09495 PF03471 Transporter associated domain ND443_09495 PF03741 Integral membrane protein TerC family ND443_09500 PF03610 PTS system fructose IIA component ND443_09500 PF03830 PTS system sorbose subfamily IIB component ND443_09505 PF03609 PTS system sorbose-specific iic component ND443_09510 PF03613 PTS system mannose/fructose/sorbose family IID component ND443_09515 PF06173 Protein of unknown function (DUF986) ND443_09520 PF02659 Putative manganese efflux pump ND443_09525 PF02441 Flavoprotein ND443_09540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND443_09540 PF02770 Acyl-CoA dehydrogenase, middle domain ND443_09540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND443_09550 PF00732 GMC oxidoreductase ND443_09550 PF05199 GMC oxidoreductase ND443_09555 PF13193 AMP-binding enzyme C-terminal domain ND443_09555 PF00501 AMP-binding enzyme ND443_09555 PF00668 Condensation domain ND443_09555 PF00550 Phosphopantetheine attachment site ND443_09560 PF07690 Major Facilitator Superfamily ND443_09580 PF13847 Methyltransferase domain ND443_09585 PF03717 Penicillin-binding Protein dimerisation domain ND443_09585 PF00905 Penicillin binding protein transpeptidase domain ND443_09590 PF02578 Multi-copper polyphenol oxidoreductase laccase ND443_09595 PF00313 'Cold-shock' DNA-binding domain ND443_09600 PF10736 Protein of unknown function (DUF2627) ND443_09605 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ND443_09610 PF00324 Amino acid permease ND443_09625 PF13974 YebO-like protein ND443_09630 PF13998 MgrB protein ND443_09635 PF13996 YobH-like protein ND443_09640 PF10964 Protein of unknown function (DUF2766) ND443_09645 PF12833 Helix-turn-helix domain ND443_09660 PF13520 Amino acid permease ND443_09665 PF00664 ABC transporter transmembrane region ND443_09665 PF00005 ABC transporter ND443_09675 PF00990 Diguanylate cyclase, GGDEF domain ND443_09675 PF01590 GAF domain ND443_09675 PF00563 EAL domain ND443_09675 PF00360 Phytochrome region ND443_09680 PF03372 Endonuclease/Exonuclease/phosphatase family ND443_09690 PF06411 HdeA/HdeB family ND443_09695 PF01820 D-ala D-ala ligase N-terminus ND443_09695 PF07478 D-ala D-ala ligase C-terminus ND443_09710 PF08241 Methyltransferase domain ND443_09715 PF00313 'Cold-shock' DNA-binding domain ND443_09720 PF00313 'Cold-shock' DNA-binding domain ND443_09725 PF00313 'Cold-shock' DNA-binding domain ND443_09735 PF04794 YdjC-like protein ND443_09740 PF07883 Cupin domain ND443_09740 PF12833 Helix-turn-helix domain ND443_09745 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ND443_09750 PF00232 Glycosyl hydrolase family 1 ND443_09755 PF02378 Phosphotransferase system, EIIC ND443_09760 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND443_09765 PF00849 RNA pseudouridylate synthase ND443_09765 PF01479 S4 domain ND443_09775 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ND443_09780 PF03553 Na+/H+ antiporter family ND443_09790 PF13520 Amino acid permease ND443_09805 PF00849 RNA pseudouridylate synthase ND443_09810 PF00282 Pyridoxal-dependent decarboxylase conserved domain ND443_09815 PF13520 Amino acid permease ND443_09820 PF04960 Glutaminase ND443_09850 PF13673 Acetyltransferase (GNAT) domain ND443_09860 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ND443_09860 PF00034 Cytochrome c ND443_09870 PF00528 Binding-protein-dependent transport system inner membrane component ND443_09875 PF00005 ABC transporter ND443_09885 PF02203 Tar ligand binding domain homologue ND443_09885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND443_09885 PF00672 HAMP domain ND443_09890 PF13276 HTH-like domain ND443_09890 PF00665 Integrase core domain ND443_09890 PF13333 Integrase core domain ND443_09910 PF01066 CDP-alcohol phosphatidyltransferase ND443_09915 PF02151 UvrB/uvrC motif ND443_09915 PF08459 UvrC Helix-hairpin-helix N-terminal ND443_09915 PF01541 GIY-YIG catalytic domain ND443_09920 PF00196 Bacterial regulatory proteins, luxR family ND443_09920 PF00072 Response regulator receiver domain ND443_09925 PF10769 Protein of unknown function (DUF2594) ND443_09945 PF00324 Amino acid permease ND443_09950 PF01276 Orn/Lys/Arg decarboxylase, major domain ND443_09950 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND443_09950 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND443_09955 PF13520 Amino acid permease ND443_09960 PF18500 CadC C-terminal domain 1 ND443_09960 PF00486 Transcriptional regulatory protein, C terminal ND443_09965 PF00474 Sodium:solute symporter family ND443_09970 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ND443_09970 PF01619 Proline dehydrogenase ND443_09970 PF00171 Aldehyde dehydrogenase family ND443_09970 PF14850 DNA-binding domain of Proline dehydrogenase ND443_09975 PF00005 ABC transporter ND443_09980 PF00528 Binding-protein-dependent transport system inner membrane component ND443_09985 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND443_09990 PF00291 Pyridoxal-phosphate dependent enzyme ND443_09995 PF02899 Phage integrase, N-terminal SAM-like domain ND443_10000 PF04542 Sigma-70 region 2 ND443_10000 PF04539 Sigma-70 region 3 ND443_10000 PF04545 Sigma-70, region 4 ND443_10005 PF00700 Bacterial flagellin C-terminal helical region ND443_10005 PF08884 Flagellin D3 domain ND443_10005 PF00669 Bacterial flagellin N-terminal helical region ND443_10010 PF00700 Bacterial flagellin C-terminal helical region ND443_10010 PF08884 Flagellin D3 domain ND443_10010 PF00669 Bacterial flagellin N-terminal helical region ND443_10015 PF00700 Bacterial flagellin C-terminal helical region ND443_10015 PF08884 Flagellin D3 domain ND443_10015 PF00669 Bacterial flagellin N-terminal helical region ND443_10020 PF07196 Flagellin hook IN motif ND443_10020 PF07195 Flagellar hook-associated protein 2 C-terminus ND443_10020 PF02465 Flagellar hook-associated protein 2 N-terminus ND443_10025 PF02561 Flagellar protein FliS ND443_10030 PF05400 Flagellar protein FliT ND443_10035 PF12833 Helix-turn-helix domain ND443_10040 PF01966 HD domain ND443_10045 PF07885 Ion channel ND443_10045 PF02254 TrkA-N domain ND443_10050 PF01223 DNA/RNA non-specific endonuclease ND443_10060 PF02049 Flagellar hook-basal body complex protein FliE ND443_10065 PF01514 Secretory protein of YscJ/FliF family ND443_10065 PF08345 Flagellar M-ring protein C-terminal ND443_10070 PF01706 FliG C-terminal domain ND443_10070 PF14841 FliG middle domain ND443_10070 PF14842 FliG N-terminal domain ND443_10075 PF02108 Flagellar assembly protein FliH ND443_10080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND443_10080 PF18269 T3SS EscN ATPase C-terminal domain ND443_10085 PF02050 Flagellar FliJ protein ND443_10090 PF02120 Flagellar hook-length control protein FliK ND443_10095 PF03748 Flagellar basal body-associated protein FliL ND443_10100 PF02154 Flagellar motor switch protein FliM ND443_10100 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND443_10105 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND443_10105 PF16973 Flagellar motor switch protein FliN N-terminal ND443_10110 PF04347 Flagellar biosynthesis protein, FliO ND443_10115 PF00813 FliP family ND443_10120 PF01313 Bacterial export proteins, family 3 ND443_10125 PF01311 Bacterial export proteins, family 1 ND443_10130 PF00669 Bacterial flagellin N-terminal helical region ND443_10135 PF00460 Flagella basal body rod protein ND443_10135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND443_10140 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ND443_10140 PF10135 Rod binding protein ND443_10145 PF02119 Flagellar P-ring protein ND443_10150 PF02107 Flagellar L-ring protein ND443_10155 PF00460 Flagella basal body rod protein ND443_10155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND443_10160 PF00460 Flagella basal body rod protein ND443_10160 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND443_10165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND443_10165 PF07559 Flagellar basal body protein FlaE ND443_10165 PF00460 Flagella basal body rod protein ND443_10170 PF13861 FlgD Tudor-like domain ND443_10170 PF03963 Flagellar hook capping protein - N-terminal region ND443_10170 PF13860 FlgD Ig-like domain ND443_10175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND443_10175 PF00460 Flagella basal body rod protein ND443_10180 PF00460 Flagella basal body rod protein ND443_10185 PF13144 Chaperone for flagella basal body P-ring formation ND443_10185 PF17656 FlgA N-terminal domain ND443_10190 PF04316 Anti-sigma-28 factor, FlgM ND443_10195 PF05130 FlgN protein ND443_10200 PF06366 Flagellar protein FlhE ND443_10205 PF00771 FHIPEP family ND443_10210 PF01312 FlhB HrpN YscU SpaS Family ND443_10215 PF01483 Proprotein convertase P-domain ND443_10215 PF00082 Subtilase family ND443_10220 PF00196 Bacterial regulatory proteins, luxR family ND443_10230 PF00419 Fimbrial protein ND443_10235 PF13953 PapC C-terminal domain ND443_10235 PF13954 PapC N-terminal domain ND443_10235 PF00577 Outer membrane usher protein ND443_10240 PF02753 Pili assembly chaperone PapD, C-terminal domain ND443_10240 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND443_10250 PF00419 Fimbrial protein ND443_10280 PF04344 Chemotaxis phosphatase, CheZ ND443_10285 PF00072 Response regulator receiver domain ND443_10290 PF01339 CheB methylesterase ND443_10290 PF00072 Response regulator receiver domain ND443_10295 PF03705 CheR methyltransferase, all-alpha domain ND443_10295 PF01739 CheR methyltransferase, SAM binding domain ND443_10300 PF00672 HAMP domain ND443_10300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND443_10300 PF02203 Tar ligand binding domain homologue ND443_10305 PF00672 HAMP domain ND443_10305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND443_10305 PF02203 Tar ligand binding domain homologue ND443_10310 PF01584 CheW-like domain ND443_10315 PF01627 Hpt domain ND443_10315 PF02895 Signal transducing histidine kinase, homodimeric domain ND443_10315 PF01584 CheW-like domain ND443_10315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_10315 PF09078 CheY binding ND443_10320 PF13677 Membrane MotB of proton-channel complex MotA/MotB ND443_10320 PF00691 OmpA family ND443_10325 PF01618 MotA/TolQ/ExbB proton channel family ND443_10330 PF05280 Flagellar transcriptional activator (FlhC) ND443_10335 PF05247 Flagellar transcriptional activator (FlhD) ND443_10340 PF00582 Universal stress protein family ND443_10345 PF02308 MgtC family ND443_10350 PF00672 HAMP domain ND443_10350 PF02203 Tar ligand binding domain homologue ND443_10350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND443_10355 PF10781 Dextransucrase DSRB ND443_10360 PF00313 'Cold-shock' DNA-binding domain ND443_10370 PF00356 Bacterial regulatory proteins, lacI family ND443_10375 PF16353 Domain of unknown function(DUF4981) ND443_10375 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND443_10375 PF02929 Beta galactosidase small chain ND443_10375 PF00703 Glycosyl hydrolases family 2 ND443_10375 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND443_10380 PF00698 Acyl transferase domain ND443_10380 PF08240 Alcohol dehydrogenase GroES-like domain ND443_10380 PF00107 Zinc-binding dehydrogenase ND443_10380 PF16197 Ketoacyl-synthetase C-terminal extension ND443_10380 PF02801 Beta-ketoacyl synthase, C-terminal domain ND443_10380 PF08659 KR domain ND443_10380 PF00550 Phosphopantetheine attachment site ND443_10380 PF14765 Polyketide synthase dehydratase ND443_10380 PF00109 Beta-ketoacyl synthase, N-terminal domain ND443_10385 PF10777 Inner membrane protein YlaC ND443_10395 PF14001 YdfZ protein ND443_10405 PF06167 Glucose-regulated metallo-peptidase M90 ND443_10415 PF00589 Phage integrase family ND443_10415 PF13356 Arm DNA-binding domain ND443_10430 PF13693 Winged helix-turn-helix DNA-binding ND443_10465 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ND443_10485 PF04335 VirB8 protein ND443_10490 PF03524 Conjugal transfer protein ND443_10495 PF03743 Bacterial conjugation TrbI-like protein ND443_10500 PF00437 Type II/IV secretion system protein ND443_10515 PF08401 Domain of unknown function (DUF1738) ND443_10515 PF18818 Metallopeptidase superfamily domain ND443_10570 PF01648 4'-phosphopantetheinyl transferase superfamily ND443_10570 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ND443_10575 PF00939 Sodium:sulfate symporter transmembrane region ND443_10580 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ND443_10585 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase ND443_10590 PF04223 Citrate lyase, alpha subunit (CitF) ND443_10595 PF03328 HpcH/HpaI aldolase/citrate lyase family ND443_10600 PF06857 Malonate decarboxylase delta subunit (MdcD) ND443_10605 PF08218 Citrate lyase ligase C-terminal domain ND443_10610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_10610 PF17203 Single cache domain 3 ND443_10610 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND443_10610 PF00989 PAS fold ND443_10615 PF12431 Transcriptional regulator ND443_10615 PF00072 Response regulator receiver domain ND443_10620 PF00072 Response regulator receiver domain ND443_10620 PF00196 Bacterial regulatory proteins, luxR family ND443_10625 PF07730 Histidine kinase ND443_10625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_10625 PF05231 MASE1 ND443_10630 PF07690 Major Facilitator Superfamily ND443_10640 PF00528 Binding-protein-dependent transport system inner membrane component ND443_10645 PF08402 TOBE domain ND443_10645 PF00005 ABC transporter ND443_10660 PF04363 Protein of unknown function (DUF496) ND443_10665 PF04632 Fusaric acid resistance protein family ND443_10675 PF08411 Exonuclease C-terminal ND443_10675 PF00929 Exonuclease ND443_10680 PF13520 Amino acid permease ND443_10685 PF00593 TonB dependent receptor ND443_10685 PF07715 TonB-dependent Receptor Plug Domain ND443_10690 PF00005 ABC transporter ND443_10695 PF01032 FecCD transport family ND443_10705 PF00324 Amino acid permease ND443_10710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_10710 PF03466 LysR substrate binding domain ND443_10720 PF03601 Conserved hypothetical protein 698 ND443_10725 PF01261 Xylose isomerase-like TIM barrel ND443_10730 PF02378 Phosphotransferase system, EIIC ND443_10730 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND443_10735 PF00294 pfkB family carbohydrate kinase ND443_10740 PF00381 PTS HPr component phosphorylation site ND443_10740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND443_10745 PF00293 NUDIX domain ND443_10750 PF03264 NapC/NirT cytochrome c family, N-terminal region ND443_10755 PF00384 Molybdopterin oxidoreductase ND443_10755 PF18364 Molybdopterin oxidoreductase N-terminal domain ND443_10755 PF01568 Molydopterin dinucleotide binding domain ND443_10760 PF03692 Putative zinc- or iron-chelating domain ND443_10765 PF03222 Tryptophan/tyrosine permease family ND443_10770 PF09285 Elongation factor P, C-terminal ND443_10770 PF08207 Elongation factor P (EF-P) KOW-like domain ND443_10770 PF01132 Elongation factor P (EF-P) OB domain ND443_10775 PF03786 D-mannonate dehydratase (UxuA) ND443_10780 PF08125 Mannitol dehydrogenase C-terminal domain ND443_10780 PF01232 Mannitol dehydrogenase Rossmann domain ND443_10790 PF07683 Cobalamin synthesis protein cobW C-terminal domain ND443_10790 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND443_10795 PF01569 PAP2 superfamily ND443_10800 PF00877 NlpC/P60 family ND443_10805 PF12792 CSS motif domain associated with EAL ND443_10805 PF00563 EAL domain ND443_10810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND443_10815 PF00528 Binding-protein-dependent transport system inner membrane component ND443_10820 PF00528 Binding-protein-dependent transport system inner membrane component ND443_10820 PF12911 N-terminal TM domain of oligopeptide transport permease C ND443_10825 PF00005 ABC transporter ND443_10825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND443_10830 PF13989 YejG-like protein ND443_10835 PF07690 Major Facilitator Superfamily ND443_10840 PF00849 RNA pseudouridylate synthase ND443_10840 PF01479 S4 domain ND443_10845 PF00271 Helicase conserved C-terminal domain ND443_10845 PF04851 Type III restriction enzyme, res subunit ND443_10850 PF01386 Ribosomal L25p family ND443_10855 PF04245 37-kD nucleoid-associated bacterial protein ND443_10860 PF07208 Protein of unknown function (DUF1414) ND443_10865 PF11893 Domain of unknown function (DUF3413) ND443_10865 PF00884 Sulfatase ND443_10880 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND443_10895 PF04865 Baseplate J-like protein ND443_10940 PF17482 Phage tail sheath C-terminal domain ND443_10940 PF04984 Phage tail sheath protein subtilisin-like domain ND443_10980 PF01343 Peptidase family S49 ND443_11030 PF00182 Chitinase class I ND443_11045 PF00561 alpha/beta hydrolase fold ND443_11050 PF01555 DNA methylase ND443_11070 PF06530 Phage antitermination protein Q ND443_11075 PF06147 Protein of unknown function (DUF968) ND443_11090 PF05869 DNA N-6-adenine-methyltransferase (Dam) ND443_11095 PF03354 Phage Terminase ND443_11120 PF01381 Helix-turn-helix ND443_11120 PF00717 Peptidase S24-like ND443_11140 PF10065 Uncharacterized conserved protein (DUF2303) ND443_11185 PF06183 DinI-like family ND443_11190 PF12706 Beta-lactamase superfamily domain ND443_11195 PF00144 Beta-lactamase ND443_11200 PF13302 Acetyltransferase (GNAT) domain ND443_11215 PF00267 Gram-negative porin ND443_11220 PF07690 Major Facilitator Superfamily ND443_11225 PF16359 RcsD-ABL domain ND443_11225 PF01627 Hpt domain ND443_11225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_11230 PF00072 Response regulator receiver domain ND443_11230 PF00196 Bacterial regulatory proteins, luxR family ND443_11235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_11235 PF00512 His Kinase A (phospho-acceptor) domain ND443_11235 PF00072 Response regulator receiver domain ND443_11235 PF09456 RcsC Alpha-Beta-Loop (ABL) ND443_11240 PF00521 DNA gyrase/topoisomerase IV, subunit A ND443_11240 PF03989 DNA gyrase C-terminal domain, beta-propeller ND443_11250 PF03477 ATP cone domain ND443_11250 PF02867 Ribonucleotide reductase, barrel domain ND443_11250 PF00317 Ribonucleotide reductase, all-alpha domain ND443_11255 PF00268 Ribonucleotide reductase, small chain ND443_11260 PF00111 2Fe-2S iron-sulfur cluster binding domain ND443_11270 PF03974 Ecotin ND443_11275 PF00994 Probable molybdopterin binding domain ND443_11280 PF04138 GtrA-like protein ND443_11285 PF00535 Glycosyl transferase family 2 ND443_11295 PF03222 Tryptophan/tyrosine permease family ND443_11300 PF07437 YfaZ precursor ND443_11305 PF00199 Catalase ND443_11305 PF06628 Catalase-related immune-responsive ND443_11310 PF00501 AMP-binding enzyme ND443_11310 PF13193 AMP-binding enzyme C-terminal domain ND443_11315 PF13378 Enolase C-terminal domain-like ND443_11320 PF00378 Enoyl-CoA hydratase/isomerase ND443_11325 PF12697 Alpha/beta hydrolase family ND443_11330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND443_11330 PF16582 Middle domain of thiamine pyrophosphate ND443_11330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND443_11335 PF00425 chorismate binding enzyme ND443_11340 PF05957 Bacterial protein of unknown function (DUF883) ND443_11345 PF06496 Protein of unknown function (DUF1097) ND443_11350 PF00361 Proton-conducting membrane transporter ND443_11355 PF00361 Proton-conducting membrane transporter ND443_11360 PF00361 Proton-conducting membrane transporter ND443_11360 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ND443_11365 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ND443_11370 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ND443_11375 PF12838 4Fe-4S dicluster domain ND443_11380 PF00146 NADH dehydrogenase ND443_11385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND443_11385 PF00384 Molybdopterin oxidoreductase ND443_11385 PF01568 Molydopterin dinucleotide binding domain ND443_11385 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ND443_11390 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND443_11390 PF10531 SLBB domain ND443_11390 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ND443_11400 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND443_11400 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND443_11405 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND443_11410 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ND443_11415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_11415 PF03466 LysR substrate binding domain ND443_11420 PF00155 Aminotransferase class I and II ND443_11430 PF03600 Citrate transporter ND443_11430 PF02080 TrkA-C domain ND443_11440 PF03887 YfbU domain ND443_11445 PF04217 Protein of unknown function, DUF412 ND443_11450 PF00871 Acetokinase family ND443_11455 PF01515 Phosphate acetyl/butaryl transferase ND443_11455 PF07085 DRTGG domain ND443_11460 PF00356 Bacterial regulatory proteins, lacI family ND443_11460 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND443_11465 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND443_11475 PF03611 PTS system sugar-specific permease component ND443_11480 PF00293 NUDIX domain ND443_11485 PF12850 Calcineurin-like phosphoesterase superfamily domain ND443_11500 PF00043 Glutathione S-transferase, C-terminal domain ND443_11500 PF02798 Glutathione S-transferase, N-terminal domain ND443_11505 PF08338 Domain of unknown function (DUF1731) ND443_11505 PF01370 NAD dependent epimerase/dehydratase family ND443_11510 PF00005 ABC transporter ND443_11515 PF00528 Binding-protein-dependent transport system inner membrane component ND443_11520 PF00528 Binding-protein-dependent transport system inner membrane component ND443_11525 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND443_11535 PF02441 Flavoprotein ND443_11540 PF00156 Phosphoribosyl transferase domain ND443_11545 PF02674 Colicin V production protein ND443_11550 PF05036 Sporulation related domain ND443_11555 PF02875 Mur ligase family, glutamate ligase domain ND443_11555 PF08245 Mur ligase middle domain ND443_11560 PF01039 Carboxyl transferase domain ND443_11560 PF17848 Acetyl-coA carboxylase zinc finger domain ND443_11565 PF09335 SNARE associated Golgi protein ND443_11570 PF01416 tRNA pseudouridine synthase ND443_11575 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND443_11575 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND443_11580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND443_11580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND443_11580 PF11890 Domain of unknown function (DUF3410) ND443_11600 PF00155 Aminotransferase class I and II ND443_11605 PF00578 AhpC/TSA family ND443_11635 PF00109 Beta-ketoacyl synthase, N-terminal domain ND443_11635 PF02801 Beta-ketoacyl synthase, C-terminal domain ND443_11640 PF01266 FAD dependent oxidoreductase ND443_11640 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ND443_11645 PF08891 YfcL protein ND443_11650 PF04315 Elongation factor P hydroxylase ND443_11655 PF01925 Sulfite exporter TauE/SafE ND443_11660 PF03411 Penicillin-insensitive murein endopeptidase ND443_11665 PF01264 Chorismate synthase ND443_11670 PF05175 Methyltransferase small domain ND443_11675 PF01713 Smr domain ND443_11680 PF00300 Histidine phosphatase superfamily (branch 1) ND443_11685 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND443_11685 PF00378 Enoyl-CoA hydratase/isomerase ND443_11685 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND443_11690 PF02803 Thiolase, C-terminal domain ND443_11690 PF00108 Thiolase, N-terminal domain ND443_11695 PF04175 Protein of unknown function (DUF406) ND443_11700 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ND443_11705 PF04333 MlaA lipoprotein ND443_11710 PF03918 Cytochrome C biogenesis protein ND443_11715 PF03918 Cytochrome C biogenesis protein ND443_11720 PF08534 Redoxin ND443_11725 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ND443_11725 PF01578 Cytochrome C assembly protein ND443_11730 PF03100 CcmE ND443_11735 PF04995 Heme exporter protein D (CcmD) ND443_11740 PF01578 Cytochrome C assembly protein ND443_11745 PF03379 CcmB protein ND443_11750 PF00005 ABC transporter ND443_11765 PF03831 PhnA domain ND443_11765 PF08274 PhnA Zinc-Ribbon ND443_11770 PF13406 Transglycosylase SLT domain ND443_11785 PF01292 Prokaryotic cytochrome b561 ND443_11790 PF00155 Aminotransferase class I and II ND443_11795 PF07350 Protein of unknown function (DUF1479) ND443_11800 PF06580 Histidine kinase ND443_11800 PF07694 5TMR of 5TMR-LYT ND443_11800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_11805 PF04397 LytTr DNA-binding domain ND443_11805 PF00072 Response regulator receiver domain ND443_11810 PF07690 Major Facilitator Superfamily ND443_11815 PF02685 Glucokinase ND443_11825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_11825 PF03466 LysR substrate binding domain ND443_11835 PF01566 Natural resistance-associated macrophage protein ND443_11840 PF07670 Nucleoside recognition ND443_11840 PF07662 Na+ dependent nucleoside transporter C-terminus ND443_11840 PF01773 Na+ dependent nucleoside transporter N-terminus ND443_11875 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND443_11900 PF12843 Putative quorum-sensing-regulated virulence factor ND443_11905 PF03120 NAD-dependent DNA ligase OB-fold domain ND443_11905 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ND443_11905 PF12826 Helix-hairpin-helix motif ND443_11905 PF00533 BRCA1 C Terminus (BRCT) domain ND443_11905 PF01653 NAD-dependent DNA ligase adenylation domain ND443_11910 PF04354 ZipA, C-terminal FtsZ-binding domain ND443_11920 PF00291 Pyridoxal-phosphate dependent enzyme ND443_11925 PF00381 PTS HPr component phosphorylation site ND443_11930 PF05524 PEP-utilising enzyme, N-terminal ND443_11930 PF00391 PEP-utilising enzyme, mobile domain ND443_11930 PF02896 PEP-utilising enzyme, TIM barrel domain ND443_11935 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND443_11940 PF00291 Pyridoxal-phosphate dependent enzyme ND443_11945 PF00005 ABC transporter ND443_11950 PF00528 Binding-protein-dependent transport system inner membrane component ND443_11955 PF00528 Binding-protein-dependent transport system inner membrane component ND443_11965 PF07690 Major Facilitator Superfamily ND443_11970 PF01418 Helix-turn-helix domain, rpiR family ND443_11970 PF01380 SIS domain ND443_11975 PF04074 YhcH/YjgK/YiaL ND443_11980 PF00480 ROK family ND443_11985 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ND443_11990 PF00701 Dihydrodipicolinate synthetase family ND443_11995 PF04261 Dyp-type peroxidase family ND443_12000 PF06572 Protein of unknown function (DUF1131) ND443_12005 PF04076 Bacterial OB fold (BOF) protein ND443_12055 PF00583 Acetyltransferase (GNAT) family ND443_12060 PF01218 Coproporphyrinogen III oxidase ND443_12065 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ND443_12070 PF00390 Malic enzyme, N-terminal domain ND443_12070 PF03949 Malic enzyme, NAD binding domain ND443_12070 PF01515 Phosphate acetyl/butaryl transferase ND443_12075 PF00293 NUDIX domain ND443_12080 PF03264 NapC/NirT cytochrome c family, N-terminal region ND443_12085 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ND443_12090 PF00384 Molybdopterin oxidoreductase ND443_12090 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND443_12090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND443_12090 PF01568 Molydopterin dinucleotide binding domain ND443_12095 PF03927 NapD protein ND443_12100 PF00037 4Fe-4S binding domain ND443_12100 PF12800 4Fe-4S binding domain ND443_12100 PF13187 4Fe-4S dicluster domain ND443_12105 PF00196 Bacterial regulatory proteins, luxR family ND443_12105 PF00072 Response regulator receiver domain ND443_12115 PF00873 AcrB/AcrD/AcrF family ND443_12125 PF01817 Chorismate mutase type II ND443_12130 PF03960 ArsC family ND443_12135 PF07687 Peptidase dimerisation domain ND443_12135 PF01546 Peptidase family M20/M25/M40 ND443_12140 PF02557 D-alanyl-D-alanine carboxypeptidase ND443_12145 PF13980 Uncharacterised protein family (UPF0370) ND443_12150 PF02230 Phospholipase/Carboxylesterase ND443_12155 PF13718 GNAT acetyltransferase 2 ND443_12155 PF17176 tRNA-binding domain ND443_12155 PF08351 Domain of unknown function (DUF1726) ND443_12155 PF05127 Helicase ND443_12160 PF04284 Protein of unknown function (DUF441) ND443_12165 PF01259 SAICAR synthetase ND443_12170 PF06804 NlpB/DapX lipoprotein ND443_12175 PF00701 Dihydrodipicolinate synthetase family ND443_12180 PF01842 ACT domain ND443_12185 PF00578 AhpC/TSA family ND443_12190 PF01594 AI-2E family transporter ND443_12195 PF07720 Tetratricopeptide repeat ND443_12195 PF01435 Peptidase family M48 ND443_12200 PF03960 ArsC family ND443_12205 PF00308 Bacterial dnaA protein ND443_12210 PF00860 Permease family ND443_12220 PF00586 AIR synthase related protein, N-terminal domain ND443_12220 PF02769 AIR synthase related protein, C-terminal domain ND443_12225 PF00551 Formyl transferase ND443_12230 PF13302 Acetyltransferase (GNAT) domain ND443_12235 PF00005 ABC transporter ND443_12240 PF00528 Binding-protein-dependent transport system inner membrane component ND443_12245 PF00528 Binding-protein-dependent transport system inner membrane component ND443_12250 PF13090 Polyphosphate kinase C-terminal domain 2 ND443_12250 PF13089 Polyphosphate kinase N-terminal domain ND443_12250 PF02503 Polyphosphate kinase middle domain ND443_12250 PF17941 Polyphosphate kinase C-terminal domain 1 ND443_12255 PF02541 Ppx/GppA phosphatase family ND443_12265 PF01769 Divalent cation transporter ND443_12265 PF00571 CBS domain ND443_12265 PF03448 MgtE intracellular N domain ND443_12270 PF00012 Hsp70 protein ND443_12280 PF02753 Pili assembly chaperone PapD, C-terminal domain ND443_12280 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND443_12285 PF13953 PapC C-terminal domain ND443_12285 PF13954 PapC N-terminal domain ND443_12285 PF00577 Outer membrane usher protein ND443_12300 PF13533 Biotin-lipoyl like ND443_12305 PF00873 AcrB/AcrD/AcrF family ND443_12310 PF00873 AcrB/AcrD/AcrF family ND443_12315 PF07690 Major Facilitator Superfamily ND443_12320 PF00672 HAMP domain ND443_12320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_12320 PF00512 His Kinase A (phospho-acceptor) domain ND443_12325 PF00486 Transcriptional regulatory protein, C terminal ND443_12325 PF00072 Response regulator receiver domain ND443_12330 PF07411 Domain of unknown function (DUF1508) ND443_12335 PF16325 Peptidase family U32 C-terminal domain ND443_12335 PF01136 Peptidase family U32 ND443_12340 PF00781 Diacylglycerol kinase catalytic domain ND443_12355 PF08543 Phosphomethylpyrimidine kinase ND443_12365 PF02540 NAD synthase ND443_12365 PF00958 GMP synthase C terminal domain ND443_12365 PF00117 Glutamine amidotransferase class-I ND443_12370 PF00478 IMP dehydrogenase / GMP reductase domain ND443_12370 PF00571 CBS domain ND443_12375 PF13742 OB-fold nucleic acid binding domain ND443_12375 PF02601 Exonuclease VII, large subunit ND443_12380 PF07191 zinc-ribbons ND443_12385 PF01926 50S ribosome-binding GTPase ND443_12385 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ND443_12390 PF13360 PQQ-like domain ND443_12395 PF09976 Tetratricopeptide repeat-like domain ND443_12400 PF03129 Anticodon binding domain ND443_12400 PF13393 Histidyl-tRNA synthetase ND443_12405 PF04551 GcpE protein ND443_12410 PF13464 Domain of unknown function (DUF4115) ND443_12420 PF04055 Radical SAM superfamily ND443_12425 PF00334 Nucleoside diphosphate kinase ND443_12435 PF06832 Penicillin-Binding Protein C-terminus Family ND443_12435 PF00912 Transglycosylase ND443_12435 PF00905 Penicillin binding protein transpeptidase domain ND443_12440 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ND443_12440 PF00207 Alpha-2-macroglobulin family ND443_12440 PF07703 Alpha-2-macroglobulin bait region domain ND443_12440 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain ND443_12440 PF17962 Bacterial macroglobulin domain 6 ND443_12440 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ND443_12440 PF01835 MG2 domain ND443_12440 PF07678 A-macroglobulin TED domain ND443_12440 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ND443_12445 PF07179 SseB protein N-terminal domain ND443_12445 PF14581 SseB protein C-terminal domain ND443_12450 PF12404 Peptidase ND443_12450 PF00883 Cytosol aminopeptidase family, catalytic domain ND443_12455 PF04384 Iron-sulphur cluster assembly ND443_12460 PF00111 2Fe-2S iron-sulfur cluster binding domain ND443_12465 PF00012 Hsp70 protein ND443_12470 PF00226 DnaJ domain ND443_12470 PF07743 HSCB C-terminal oligomerisation domain ND443_12475 PF01521 Iron-sulphur cluster biosynthesis ND443_12480 PF01592 NifU-like N terminal domain ND443_12485 PF00266 Aminotransferase class-V ND443_12490 PF02082 Transcriptional regulator ND443_12495 PF00588 SpoU rRNA Methylase family ND443_12500 PF00459 Inositol monophosphatase family ND443_12505 PF03824 High-affinity nickel-transport protein ND443_12510 PF06226 Protein of unknown function (DUF1007) ND443_12515 PF00874 PRD domain ND443_12520 PF12832 MFS_1 like family ND443_12525 PF00464 Serine hydroxymethyltransferase ND443_12530 PF00042 Globin ND443_12530 PF00175 Oxidoreductase NAD-binding domain ND443_12530 PF00970 Oxidoreductase FAD-binding domain ND443_12535 PF14502 Helix-turn-helix domain ND443_12535 PF14503 YhfZ C-terminal domain ND443_12545 PF01168 Alanine racemase, N-terminal domain ND443_12550 PF02126 Phosphotriesterase family ND443_12555 PF10941 Protein of unknown function DUF2620 ND443_12560 PF10797 Protein of unknown function ND443_12565 PF00543 Nitrogen regulatory protein P-II ND443_12570 PF02540 NAD synthase ND443_12570 PF00795 Carbon-nitrogen hydrolase ND443_12575 PF00158 Sigma-54 interaction domain ND443_12575 PF00072 Response regulator receiver domain ND443_12580 PF13942 YfhG lipoprotein ND443_12585 PF00512 His Kinase A (phospho-acceptor) domain ND443_12585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_12595 PF02769 AIR synthase related protein, C-terminal domain ND443_12595 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ND443_12595 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ND443_12600 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND443_12600 PF01464 Transglycosylase SLT domain ND443_12605 PF14437 MafB19-like deaminase ND443_12615 PF02378 Phosphotransferase system, EIIC ND443_12615 PF00367 phosphotransferase system, EIIB ND443_12620 PF01380 SIS domain ND443_12625 PF01418 Helix-turn-helix domain, rpiR family ND443_12625 PF01380 SIS domain ND443_12630 PF12838 4Fe-4S dicluster domain ND443_12635 PF01648 4'-phosphopantetheinyl transferase superfamily ND443_12640 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ND443_12645 PF02565 Recombination protein O C terminal ND443_12645 PF11967 Recombination protein O N terminal ND443_12650 PF07650 KH domain ND443_12650 PF01926 50S ribosome-binding GTPase ND443_12655 PF00035 Double-stranded RNA binding motif ND443_12655 PF14622 Ribonuclease-III-like ND443_12660 PF10502 Signal peptidase, peptidase S26 ND443_12665 PF06421 GTP-binding protein LepA C-terminus ND443_12665 PF00679 Elongation factor G C-terminus ND443_12665 PF00009 Elongation factor Tu GTP binding domain ND443_12665 PF03144 Elongation factor Tu domain 2 ND443_12675 PF03888 MucB/RseB N-terminal domain ND443_12675 PF17188 MucB/RseB C-terminal domain ND443_12680 PF03873 Anti sigma-E protein RseA, C-terminal domain ND443_12680 PF03872 Anti sigma-E protein RseA, N-terminal domain ND443_12685 PF04542 Sigma-70 region 2 ND443_12685 PF08281 Sigma-70, region 4 ND443_12690 PF00890 FAD binding domain ND443_12690 PF02910 Fumarate reductase flavoprotein C-term ND443_12695 PF05175 Methyltransferase small domain ND443_12700 PF00270 DEAD/DEAH box helicase ND443_12700 PF00271 Helicase conserved C-terminal domain ND443_12705 PF12796 Ankyrin repeats (3 copies) ND443_12715 PF01228 Glycine radical ND443_12720 PF03167 Uracil DNA glycosylase superfamily ND443_12725 PF01025 GrpE ND443_12730 PF01513 ATP-NAD kinase ND443_12735 PF02463 RecF/RecN/SMC N terminal domain ND443_12740 PF04355 SmpA / OmlA family ND443_12745 PF03658 RnfH family Ubiquitin ND443_12750 PF03364 Polyketide cyclase / dehydrase and lipid transport ND443_12755 PF01668 SmpB protein ND443_12765 PF00589 Phage integrase family ND443_12765 PF13356 Arm DNA-binding domain ND443_12795 PF01926 50S ribosome-binding GTPase ND443_12800 PF13280 WYL domain ND443_12800 PF08220 DeoR-like helix-turn-helix domain ND443_12825 PF06067 Domain of unknown function (DUF932) ND443_12830 PF03230 Antirestriction protein ND443_12835 PF04002 RadC-like JAB domain ND443_12840 PF06174 Protein of unknown function (DUF987) ND443_12845 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A ND443_12850 PF06755 CbtA_toxin of type IV toxin-antitoxin system ND443_12890 PF02753 Pili assembly chaperone PapD, C-terminal domain ND443_12890 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND443_12895 PF00577 Outer membrane usher protein ND443_12895 PF13953 PapC C-terminal domain ND443_12895 PF13954 PapC N-terminal domain ND443_12920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_12920 PF03466 LysR substrate binding domain ND443_12935 PF01527 Transposase ND443_12945 PF18413 Neuraminidase-like domain ND443_12945 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND443_12945 PF18413 Neuraminidase-like domain ND443_12945 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND443_12955 PF03534 Salmonella virulence plasmid 65kDa B protein ND443_12955 PF12255 Insecticide toxin TcdB middle/C-terminal region ND443_12955 PF12256 Insecticide toxin TcdB middle/N-terminal region ND443_12960 PF14431 YwqJ-like deaminase ND443_12960 PF18807 Tripartite Tc toxins repeat ND443_12990 PF00571 CBS domain ND443_12990 PF01380 SIS domain ND443_12995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND443_12995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND443_13005 PF02653 Branched-chain amino acid transport system / permease component ND443_13010 PF00005 ABC transporter ND443_13020 PF00561 alpha/beta hydrolase fold ND443_13025 PF03466 LysR substrate binding domain ND443_13025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_13030 PF02652 L-lactate permease ND443_13035 PF01070 FMN-dependent dehydrogenase ND443_13040 PF06039 Malate:quinone oxidoreductase (Mqo) ND443_13045 PF00313 'Cold-shock' DNA-binding domain ND443_13055 PF06711 Protein of unknown function (DUF1198) ND443_13060 PF09400 Protein of unknown function (DUF2002) ND443_13075 PF07972 NrdI Flavodoxin like ND443_13080 PF08343 Ribonucleotide reductase N-terminal ND443_13080 PF02867 Ribonucleotide reductase, barrel domain ND443_13080 PF00317 Ribonucleotide reductase, all-alpha domain ND443_13085 PF00268 Ribonucleotide reductase, small chain ND443_13090 PF00005 ABC transporter ND443_13090 PF00571 CBS domain ND443_13095 PF00528 Binding-protein-dependent transport system inner membrane component ND443_13100 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND443_13110 PF07690 Major Facilitator Superfamily ND443_13115 PF01047 MarR family ND443_13125 PF00529 HlyD membrane-fusion protein of T1SS ND443_13125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND443_13130 PF07690 Major Facilitator Superfamily ND443_13135 PF00588 SpoU rRNA Methylase family ND443_13135 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND443_13140 PF00085 Thioredoxin ND443_13145 PF03942 DTW domain ND443_13150 PF00583 Acetyltransferase (GNAT) family ND443_13150 PF13380 CoA binding domain ND443_13150 PF13607 Succinyl-CoA ligase like flavodoxin domain ND443_13155 PF13091 PLD-like domain ND443_13160 PF10043 Predicted periplasmic lipoprotein (DUF2279) ND443_13190 PF00005 ABC transporter ND443_13190 PF09383 NIL domain ND443_13195 PF00528 Binding-protein-dependent transport system inner membrane component ND443_13200 PF03180 NLPA lipoprotein ND443_13205 PF16358 RcsF lipoprotein ND443_13210 PF01980 tRNA-methyltransferase O ND443_13210 PF18389 TrmO C-terminal domain ND443_13215 PF03129 Anticodon binding domain ND443_13215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND443_13215 PF04073 Aminoacyl-tRNA editing domain ND443_13220 PF04170 NlpE N-terminal domain ND443_13220 PF17185 NlpE C-terminal OB domain ND443_13225 PF00472 RF-1 domain ND443_13230 PF07152 YaeQ protein ND443_13235 PF06786 Uncharacterised protein family (UPF0253) ND443_13240 PF07073 Modulator of Rho-dependent transcription termination (ROF) ND443_13245 PF00034 Cytochrome c ND443_13250 PF01171 PP-loop family ND443_13250 PF09179 TilS substrate binding domain ND443_13250 PF11734 TilS substrate C-terminal domain ND443_13255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND443_13270 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ND443_13275 PF07733 Bacterial DNA polymerase III alpha NTPase domain ND443_13275 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ND443_13275 PF14579 Helix-hairpin-helix motif ND443_13275 PF02811 PHP domain ND443_13275 PF01336 OB-fold nucleic acid binding domain ND443_13280 PF01351 Ribonuclease HII ND443_13285 PF02684 Lipid-A-disaccharide synthetase ND443_13290 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ND443_13290 PF00132 Bacterial transferase hexapeptide (six repeats) ND443_13295 PF07977 FabA-like domain ND443_13300 PF00132 Bacterial transferase hexapeptide (six repeats) ND443_13300 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ND443_13305 PF03938 Outer membrane protein (OmpH-like) ND443_13310 PF01103 Surface antigen ND443_13310 PF07244 Surface antigen variable number repeat ND443_13315 PF17820 PDZ domain ND443_13315 PF02163 Peptidase family M50 ND443_13325 PF01255 Putative undecaprenyl diphosphate synthase ND443_13330 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ND443_13330 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ND443_13330 PF13288 DXP reductoisomerase C-terminal domain ND443_13335 PF01765 Ribosome recycling factor ND443_13340 PF00696 Amino acid kinase family ND443_13345 PF00889 Elongation factor TS ND443_13350 PF00318 Ribosomal protein S2 ND443_13355 PF00557 Metallopeptidase family M24 ND443_13360 PF08335 GlnD PII-uridylyltransferase ND443_13360 PF01966 HD domain ND443_13360 PF01909 Nucleotidyltransferase domain ND443_13360 PF01842 ACT domain ND443_13365 PF00132 Bacterial transferase hexapeptide (six repeats) ND443_13365 PF14602 Hexapeptide repeat of succinyl-transferase ND443_13365 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ND443_13370 PF11944 Protein of unknown function (DUF3461) ND443_13375 PF00258 Flavodoxin ND443_13380 PF00849 RNA pseudouridylate synthase ND443_13385 PF04287 tRNA pseudouridine synthase C ND443_13390 PF07348 Syd protein (SUKH-2) ND443_13395 PF14489 QueF-like protein ND443_13395 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ND443_13400 PF03641 Possible lysine decarboxylase ND443_13400 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ND443_13400 PF11892 Domain of unknown function (DUF3412) ND443_13405 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND443_13405 PF01367 5'-3' exonuclease, C-terminal SAM fold ND443_13410 PF01728 FtsJ-like methyltransferase ND443_13410 PF18125 RlmM ferredoxin-like domain ND443_13415 PF04241 Protein of unknown function (DUF423) ND443_13420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_13420 PF03466 LysR substrate binding domain ND443_13425 PF06004 Bacterial protein of unknown function (DUF903) ND443_13430 PF00266 Aminotransferase class-V ND443_13435 PF02657 Fe-S metabolism associated domain ND443_13440 PF00899 ThiF family ND443_13445 PF06725 3D domain ND443_13445 PF03562 MltA specific insert domain ND443_13465 PF01520 N-acetylmuramoyl-L-alanine amidase ND443_13465 PF11741 AMIN domain ND443_13470 PF00696 Amino acid kinase family ND443_13470 PF00583 Acetyltransferase (GNAT) family ND443_13475 PF13538 UvrD-like helicase C-terminal domain ND443_13480 PF12705 PD-(D/E)XK nuclease superfamily ND443_13480 PF00580 UvrD/REP helicase N-terminal domain ND443_13480 PF13361 UvrD-like helicase C-terminal domain ND443_13485 PF00675 Insulinase (Peptidase family M16) ND443_13485 PF05193 Peptidase M16 inactive domain ND443_13485 PF16187 Middle or third domain of peptidase_M16 ND443_13490 PF17946 RecC C-terminal domain ND443_13495 PF07963 Prokaryotic N-terminal methylation motif ND443_13495 PF12528 Type II secretion prepilin peptidase dependent protein C ND443_13510 PF07963 Prokaryotic N-terminal methylation motif ND443_13510 PF00114 Pilin (bacterial filament) ND443_13515 PF00303 Thymidylate synthase ND443_13520 PF01790 Prolipoprotein diacylglyceryl transferase ND443_13525 PF05524 PEP-utilising enzyme, N-terminal ND443_13525 PF00391 PEP-utilising enzyme, mobile domain ND443_13525 PF02896 PEP-utilising enzyme, TIM barrel domain ND443_13525 PF01590 GAF domain ND443_13530 PF00293 NUDIX domain ND443_13535 PF02976 DNA mismatch repair enzyme MutH ND443_13540 PF03741 Integral membrane protein TerC family ND443_13545 PF00248 Aldo/keto reductase family ND443_13550 PF07690 Major Facilitator Superfamily ND443_13555 PF01553 Acyltransferase ND443_13555 PF00501 AMP-binding enzyme ND443_13555 PF13193 AMP-binding enzyme C-terminal domain ND443_13560 PF00356 Bacterial regulatory proteins, lacI family ND443_13565 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ND443_13565 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND443_13570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_13570 PF03466 LysR substrate binding domain ND443_13575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_13575 PF03466 LysR substrate binding domain ND443_13615 PF11612 Type II secretion system (T2SS), protein J ND443_13615 PF07963 Prokaryotic N-terminal methylation motif ND443_13620 PF07963 Prokaryotic N-terminal methylation motif ND443_13620 PF02501 Type II secretion system (T2SS), protein I ND443_13630 PF07963 Prokaryotic N-terminal methylation motif ND443_13630 PF08334 Type II secretion system (T2SS), protein G ND443_13635 PF00482 Type II secretion system (T2SS), protein F ND443_13640 PF00437 Type II/IV secretion system protein ND443_13645 PF00263 Bacterial type II and III secretion system protein ND443_13645 PF03958 Bacterial type II/III secretion system short domain ND443_13670 PF00005 ABC transporter ND443_13675 PF02405 Permease MlaE ND443_13685 PF00152 tRNA synthetases class II (D, K and N) ND443_13685 PF01336 OB-fold nucleic acid binding domain ND443_13695 PF01368 DHH family ND443_13695 PF17768 RecJ OB domain ND443_13695 PF02272 DHHA1 domain ND443_13700 PF10411 Disulfide bond isomerase protein N-terminus ND443_13700 PF13098 Thioredoxin-like domain ND443_13705 PF02899 Phage integrase, N-terminal SAM-like domain ND443_13705 PF00589 Phage integrase family ND443_13710 PF00258 Flavodoxin ND443_13715 PF07254 Membrane-bound toxin component of toxin-antitoxin system ND443_13720 PF03937 Flavinator of succinate dehydrogenase ND443_13725 PF01571 Aminomethyltransferase folate-binding domain ND443_13730 PF03006 Haemolysin-III related ND443_13740 PF02347 Glycine cleavage system P-protein ND443_13745 PF01597 Glycine cleavage H-protein ND443_13750 PF01571 Aminomethyltransferase folate-binding domain ND443_13750 PF08669 Glycine cleavage T-protein C-terminal barrel domain ND443_13755 PF01494 FAD binding domain ND443_13760 PF01494 FAD binding domain ND443_13765 PF00557 Metallopeptidase family M24 ND443_13765 PF05195 Aminopeptidase P, N-terminal domain ND443_13770 PF03695 Uncharacterised protein family (UPF0149) ND443_13775 PF05164 Cell division protein ZapA ND443_13785 PF01812 5-formyltetrahydrofolate cyclo-ligase family ND443_13790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND443_13790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND443_13790 PF01842 ACT domain ND443_13795 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ND443_13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_13800 PF03466 LysR substrate binding domain ND443_13805 PF04402 Protein of unknown function (DUF541) ND443_13810 PF01810 LysE type translocator ND443_13815 PF05552 Conserved TM helix ND443_13815 PF00924 Mechanosensitive ion channel ND443_13820 PF01116 Fructose-bisphosphate aldolase class-II ND443_13825 PF00162 Phosphoglycerate kinase ND443_13830 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND443_13830 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND443_13835 PF02779 Transketolase, pyrimidine binding domain ND443_13835 PF02780 Transketolase, C-terminal domain ND443_13835 PF00456 Transketolase, thiamine diphosphate binding domain ND443_13845 PF17810 Arginine decarboxylase helical bundle domain ND443_13845 PF17944 Arginine decarboxylase C-terminal helical extension ND443_13845 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND443_13850 PF02773 S-adenosylmethionine synthetase, C-terminal domain ND443_13850 PF02772 S-adenosylmethionine synthetase, central domain ND443_13850 PF00438 S-adenosylmethionine synthetase, N-terminal domain ND443_13860 PF04143 Sulphur transport ND443_13870 PF10263 SprT-like family ND443_13870 PF17283 SprT-like zinc ribbon domain ND443_13875 PF04231 Endonuclease I ND443_13880 PF04452 RNA methyltransferase ND443_13885 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ND443_13885 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ND443_13890 PF02622 Uncharacterized ACR, COG1678 ND443_13895 PF03652 Holliday junction resolvase ND443_13900 PF00795 Carbon-nitrogen hydrolase ND443_13905 PF04371 Porphyromonas-type peptidyl-arginine deiminase ND443_13910 PF00437 Type II/IV secretion system protein ND443_13915 PF01168 Alanine racemase, N-terminal domain ND443_13920 PF03807 NADP oxidoreductase coenzyme F420-dependent ND443_13920 PF14748 Pyrroline-5-carboxylate reductase dimerisation ND443_13925 PF02325 YGGT family ND443_13930 PF02594 Uncharacterised ACR, YggU family COG1872 ND443_13935 PF01725 Ham1 family ND443_13940 PF06969 HemN C-terminal domain ND443_13940 PF04055 Radical SAM superfamily ND443_13945 PF11101 Protein of unknown function (DUF2884) ND443_13950 PF04960 Glutaminase ND443_13955 PF04320 Protein with unknown function (DUF469) ND443_13960 PF02390 Putative methyltransferase ND443_13965 PF00730 HhH-GPD superfamily base excision DNA repair protein ND443_13965 PF14815 NUDIX domain ND443_13965 PF00633 Helix-hairpin-helix motif ND443_13965 PF10576 Iron-sulfur binding domain of endonuclease III ND443_13970 PF04362 Bacterial Fe(2+) trafficking ND443_13975 PF01464 Transglycosylase SLT domain ND443_13975 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ND443_14020 PF00294 pfkB family carbohydrate kinase ND443_14025 PF02901 Pyruvate formate lyase-like ND443_14025 PF01228 Glycine radical ND443_14030 PF00871 Acetokinase family ND443_14035 PF01490 Transmembrane amino acid transporter protein ND443_14040 PF00291 Pyridoxal-phosphate dependent enzyme ND443_14045 PF00668 Condensation domain ND443_14045 PF00501 AMP-binding enzyme ND443_14045 PF13193 AMP-binding enzyme C-terminal domain ND443_14045 PF00550 Phosphopantetheine attachment site ND443_14045 PF00975 Thioesterase domain ND443_14055 PF00550 Phosphopantetheine attachment site ND443_14055 PF00857 Isochorismatase family ND443_14060 PF13193 AMP-binding enzyme C-terminal domain ND443_14060 PF00501 AMP-binding enzyme ND443_14065 PF00425 chorismate binding enzyme ND443_14070 PF01497 Periplasmic binding protein ND443_14075 PF05977 Transmembrane secretion effector ND443_14080 PF01032 FecCD transport family ND443_14085 PF01032 FecCD transport family ND443_14090 PF00005 ABC transporter ND443_14100 PF00501 AMP-binding enzyme ND443_14100 PF13193 AMP-binding enzyme C-terminal domain ND443_14100 PF00668 Condensation domain ND443_14100 PF00550 Phosphopantetheine attachment site ND443_14100 PF00975 Thioesterase domain ND443_14105 PF03621 MbtH-like protein ND443_14110 PF11806 Domain of unknown function (DUF3327) ND443_14110 PF00756 Putative esterase ND443_14115 PF00593 TonB dependent receptor ND443_14115 PF07715 TonB-dependent Receptor Plug Domain ND443_14120 PF08501 Shikimate dehydrogenase substrate binding domain ND443_14145 PF04972 BON domain ND443_14145 PF00263 Bacterial type II and III secretion system protein ND443_14145 PF13629 Pilus formation protein N terminal region ND443_14165 PF00437 Type II/IV secretion system protein ND443_14205 PF02472 Biopolymer transport protein ExbD/TolR ND443_14210 PF01618 MotA/TolQ/ExbB proton channel family ND443_14215 PF01053 Cys/Met metabolism PLP-dependent enzyme ND443_14220 PF09335 SNARE associated Golgi protein ND443_14225 PF06719 AraC-type transcriptional regulator N-terminus ND443_14225 PF12833 Helix-turn-helix domain ND443_14230 PF00465 Iron-containing alcohol dehydrogenase ND443_14235 PF00248 Aldo/keto reductase family ND443_14240 PF04055 Radical SAM superfamily ND443_14240 PF08497 Radical SAM N-terminal ND443_14240 PF11842 Domain of unknown function (DUF3362) ND443_14245 PF07731 Multicopper oxidase ND443_14245 PF07732 Multicopper oxidase ND443_14250 PF01553 Acyltransferase ND443_14255 PF03989 DNA gyrase C-terminal domain, beta-propeller ND443_14255 PF00521 DNA gyrase/topoisomerase IV, subunit A ND443_14260 PF02525 Flavodoxin-like fold ND443_14265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_14265 PF03466 LysR substrate binding domain ND443_14270 PF01751 Toprim domain ND443_14270 PF00986 DNA gyrase B subunit, carboxyl terminus ND443_14270 PF00204 DNA gyrase B ND443_14270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_14275 PF05728 Uncharacterised protein family (UPF0227) ND443_14280 PF00149 Calcineurin-like phosphoesterase ND443_14285 PF06853 Protein of unknown function (DUF1249) ND443_14290 PF00293 NUDIX domain ND443_14295 PF02321 Outer membrane efflux protein ND443_14300 PF06693 Protein of unknown function (DUF1190) ND443_14305 PF03738 Glutathionylspermidine synthase preATP-grasp ND443_14310 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ND443_14315 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ND443_14320 PF04380 Membrane fusogenic activity ND443_14330 PF01467 Cytidylyltransferase-like ND443_14330 PF00294 pfkB family carbohydrate kinase ND443_14335 PF03710 Glutamate-ammonia ligase adenylyltransferase ND443_14335 PF08335 GlnD PII-uridylyltransferase ND443_14340 PF01928 CYTH domain ND443_14345 PF08239 Bacterial SH3 domain ND443_14350 PF01966 HD domain ND443_14350 PF12627 Probable RNA and SrmB- binding site of polymerase A ND443_14350 PF01743 Poly A polymerase head domain ND443_14355 PF02673 Bacitracin resistance protein BacA ND443_14360 PF02152 Dihydroneopterin aldolase ND443_14365 PF02660 Glycerol-3-phosphate acyltransferase ND443_14370 PF00814 Glycoprotease family ND443_14375 PF01165 Ribosomal protein S21 ND443_14380 PF01807 CHC2 zinc finger ND443_14380 PF10410 DnaB-helicase binding domain of primase ND443_14380 PF08278 DNA primase DnaG DnaB-binding ND443_14380 PF08275 DNA primase catalytic core, N-terminal domain ND443_14385 PF04546 Sigma-70, non-essential region ND443_14385 PF03979 Sigma-70 factor, region 1.1 ND443_14385 PF00140 Sigma-70 factor, region 1.2 ND443_14385 PF04542 Sigma-70 region 2 ND443_14385 PF04539 Sigma-70 region 3 ND443_14385 PF04545 Sigma-70, region 4 ND443_14410 PF00106 short chain dehydrogenase ND443_14435 PF08241 Methyltransferase domain ND443_14440 PF00535 Glycosyl transferase family 2 ND443_14475 PF13018 Extended Signal Peptide of Type V secretion system ND443_14475 PF13332 Hemagglutinin repeat ND443_14475 PF05860 haemagglutination activity domain ND443_14475 PF04829 Pre-toxin domain with VENN motif ND443_14480 PF08479 POTRA domain, ShlB-type ND443_14480 PF17287 POTRA domain ND443_14480 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND443_14485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND443_14485 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND443_14490 PF05175 Methyltransferase small domain ND443_14500 PF01863 Protein of unknown function DUF45 ND443_14505 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND443_14510 PF03741 Integral membrane protein TerC family ND443_14515 PF00375 Sodium:dicarboxylate symporter family ND443_14520 PF10688 Bacterial inner membrane protein ND443_14525 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ND443_14525 PF08666 SAF domain ND443_14530 PF01232 Mannitol dehydrogenase Rossmann domain ND443_14530 PF08125 Mannitol dehydrogenase C-terminal domain ND443_14535 PF02614 Glucuronate isomerase ND443_14540 PF07690 Major Facilitator Superfamily ND443_14545 PF00392 Bacterial regulatory proteins, gntR family ND443_14545 PF07729 FCD domain ND443_14555 PF09335 SNARE associated Golgi protein ND443_14560 PF13721 SecD export protein N-terminal TM region ND443_14570 PF05957 Bacterial protein of unknown function (DUF883) ND443_14575 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ND443_14580 PF13997 YqjK-like protein ND443_14585 PF07681 DoxX ND443_14590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_14590 PF03466 LysR substrate binding domain ND443_14595 PF17954 Quercetinase C-terminal cupin domain ND443_14595 PF02678 Pirin ND443_14610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND443_14615 PF04348 LppC putative lipoprotein ND443_14620 PF02021 Uncharacterised protein family UPF0102 ND443_14625 PF13580 SIS domain ND443_14630 PF04972 BON domain ND443_14635 PF00912 Transglycosylase ND443_14645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_14645 PF18415 Histidine kinase receptor ArcB trans-membrane domain ND443_14645 PF01627 Hpt domain ND443_14645 PF00989 PAS fold ND443_14645 PF00072 Response regulator receiver domain ND443_14645 PF00512 His Kinase A (phospho-acceptor) domain ND443_14650 PF04055 Radical SAM superfamily ND443_14650 PF16199 Radical_SAM C-terminal domain ND443_14655 PF04898 Glutamate synthase central domain ND443_14655 PF01493 GXGXG motif ND443_14655 PF00310 Glutamine amidotransferases class-II ND443_14655 PF01645 Conserved region in glutamate synthase ND443_14660 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND443_14660 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ND443_14670 PF04386 Stringent starvation protein B ND443_14675 PF00043 Glutathione S-transferase, C-terminal domain ND443_14675 PF02798 Glutathione S-transferase, N-terminal domain ND443_14680 PF00380 Ribosomal protein S9/S16 ND443_14685 PF00572 Ribosomal protein L13 ND443_14690 PF03969 AFG1-like ATPase ND443_14695 PF06295 Protein of unknown function (DUF1043) ND443_14700 PF00595 PDZ domain ND443_14700 PF13180 PDZ domain ND443_14705 PF13180 PDZ domain ND443_14710 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND443_14715 PF01722 BolA-like protein ND443_14720 PF13466 STAS domain ND443_14725 PF05494 MlaC protein ND443_14730 PF02470 MlaD protein ND443_14735 PF02405 Permease MlaE ND443_14740 PF00005 ABC transporter ND443_14745 PF01699 Sodium/calcium exchanger protein ND443_14750 PF00571 CBS domain ND443_14750 PF01380 SIS domain ND443_14760 PF06835 Lipopolysaccharide-assembly, LptC-related ND443_14765 PF03968 OstA-like protein ND443_14770 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND443_14770 PF00005 ABC transporter ND443_14775 PF00309 Sigma-54 factor, Activator interacting domain (AID) ND443_14775 PF04963 Sigma-54 factor, core binding domain ND443_14775 PF04552 Sigma-54, DNA binding domain ND443_14780 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND443_14785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND443_14790 PF03668 P-loop ATPase protein family ND443_14795 PF00381 PTS HPr component phosphorylation site ND443_14800 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND443_14800 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND443_14805 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ND443_14805 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ND443_14810 PF01042 Endoribonuclease L-PSP ND443_14815 PF00128 Alpha amylase, catalytic domain ND443_14815 PF11941 Domain of unknown function (DUF3459) ND443_14820 PF02378 Phosphotransferase system, EIIC ND443_14820 PF00367 phosphotransferase system, EIIB ND443_14825 PF00356 Bacterial regulatory proteins, lacI family ND443_14830 PF00689 Cation transporting ATPase, C-terminus ND443_14830 PF00690 Cation transporter/ATPase, N-terminus ND443_14840 PF01272 Transcription elongation factor, GreA/GreB, C-term ND443_14840 PF14760 Rnk N-terminus ND443_14845 PF07361 Cytochrome b562 ND443_14850 PF01523 Putative modulator of DNA gyrase ND443_14855 PF04751 Protein of unknown function (DUF615) ND443_14860 PF01337 Barstar (barnase inhibitor) ND443_14865 PF00545 ribonuclease ND443_14870 PF00171 Aldehyde dehydrogenase family ND443_14875 PF04632 Fusaric acid resistance protein family ND443_14880 PF13533 Biotin-lipoyl like ND443_14885 PF07869 Protein of unknown function (DUF1656) ND443_14890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_14890 PF03466 LysR substrate binding domain ND443_14895 PF01523 Putative modulator of DNA gyrase ND443_14900 PF00795 Carbon-nitrogen hydrolase ND443_14905 PF13502 AsmA-like C-terminal region ND443_14905 PF13116 Protein of unknown function ND443_14910 PF10150 Ribonuclease E/G family ND443_14910 PF00575 S1 RNA binding domain ND443_14915 PF02545 Maf-like protein ND443_14920 PF04093 rod shape-determining protein MreD ND443_14925 PF04085 rod shape-determining protein MreC ND443_14935 PF17157 Gammaproteobacterial periplasmic sensor domain ND443_14935 PF00990 Diguanylate cyclase, GGDEF domain ND443_14935 PF00563 EAL domain ND443_14940 PF00107 Zinc-binding dehydrogenase ND443_14940 PF08240 Alcohol dehydrogenase GroES-like domain ND443_14945 PF00174 Oxidoreductase molybdopterin binding domain ND443_14950 PF01794 Ferric reductase like transmembrane component ND443_14955 PF01220 Dehydroquinase class II ND443_14960 PF00364 Biotin-requiring enzyme ND443_14965 PF02785 Biotin carboxylase C-terminal domain ND443_14965 PF00289 Biotin carboxylase, N-terminal domain ND443_14965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND443_14970 PF06196 Protein of unknown function (DUF997) ND443_14975 PF00474 Sodium:solute symporter family ND443_14985 PF01207 Dihydrouridine synthase (Dus) ND443_14990 PF02954 Bacterial regulatory protein, Fis family ND443_15000 PF03279 Bacterial lipid A biosynthesis acyltransferase ND443_15005 PF00484 Carbonic anhydrase ND443_15010 PF04172 LrgB-like family ND443_15015 PF03788 LrgA family ND443_15020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_15020 PF03466 LysR substrate binding domain ND443_15025 PF00999 Sodium/hydrogen exchanger family ND443_15030 PF00860 Permease family ND443_15040 PF00436 Single-strand binding protein family ND443_15045 PF00005 ABC transporter ND443_15045 PF17755 UvrA DNA-binding domain ND443_15045 PF17760 UvrA interaction domain ND443_15050 PF04237 YjbR ND443_15055 PF00155 Aminotransferase class I and II ND443_15060 PF01168 Alanine racemase, N-terminal domain ND443_15060 PF00842 Alanine racemase, C-terminal domain ND443_15065 PF00772 DnaB-like helicase N terminal domain ND443_15065 PF03796 DnaB-like helicase C terminal domain ND443_15070 PF00107 Zinc-binding dehydrogenase ND443_15070 PF08240 Alcohol dehydrogenase GroES-like domain ND443_15075 PF09583 Phage shock protein G (Phageshock_PspG) ND443_15080 PF01207 Dihydrouridine synthase (Dus) ND443_15085 PF01475 Ferric uptake regulator family ND443_15090 PF01726 LexA DNA binding domain ND443_15090 PF00717 Peptidase S24-like ND443_15095 PF01219 Prokaryotic diacylglycerol kinase ND443_15100 PF01553 Acyltransferase ND443_15105 PF01040 UbiA prenyltransferase family ND443_15110 PF04345 Chorismate lyase ND443_15115 PF07148 Maltose operon periplasmic protein precursor (MalM) ND443_15120 PF02264 LamB porin ND443_15125 PF00005 ABC transporter ND443_15125 PF17912 MalK OB fold domain ND443_15135 PF01547 Bacterial extracellular solute-binding protein ND443_15140 PF00528 Binding-protein-dependent transport system inner membrane component ND443_15140 PF14785 Maltose transport system permease protein MalF P2 domain ND443_15145 PF00528 Binding-protein-dependent transport system inner membrane component ND443_15150 PF06146 Phosphate-starvation-inducible E ND443_15155 PF00342 Phosphoglucose isomerase ND443_15160 PF01842 ACT domain ND443_15160 PF00696 Amino acid kinase family ND443_15165 PF17287 POTRA domain ND443_15165 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND443_15165 PF08479 POTRA domain, ShlB-type ND443_15170 PF13332 Hemagglutinin repeat ND443_15170 PF05860 haemagglutination activity domain ND443_15175 PF00872 Transposase, Mutator family ND443_15180 PF02369 Bacterial Ig-like domain (group 1) ND443_15180 PF11924 Inverse autotransporter, beta-domain ND443_15180 PF07979 Intimin C-type lectin domain ND443_15180 PF09134 Invasin, domain 3 ND443_15190 PF04488 Glycosyltransferase sugar-binding region containing DXD motif ND443_15200 PF00004 ATPase family associated with various cellular activities (AAA) ND443_15200 PF17862 AAA+ lid domain ND443_15200 PF01434 Peptidase family M41 ND443_15280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_15280 PF03466 LysR substrate binding domain ND443_15300 PF02310 B12 binding domain ND443_15300 PF02607 B12 binding domain ND443_15300 PF00809 Pterin binding enzyme ND443_15300 PF02574 Homocysteine S-methyltransferase ND443_15300 PF02965 Vitamin B12 dependent methionine synthase, activation domain ND443_15305 PF01614 Bacterial transcriptional regulator ND443_15305 PF09339 IclR helix-turn-helix domain ND443_15310 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ND443_15315 PF00463 Isocitrate lyase family ND443_15320 PF01274 Malate synthase ND443_15325 PF04204 Homoserine O-succinyltransferase ND443_15360 PF01808 AICARFT/IMPCHase bienzyme ND443_15360 PF02142 MGS-like domain ND443_15365 PF02843 Phosphoribosylglycinamide synthetase, C domain ND443_15365 PF02844 Phosphoribosylglycinamide synthetase, N domain ND443_15365 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ND443_15370 PF07356 Protein of unknown function (DUF1481) ND443_15375 PF00216 Bacterial DNA-binding protein ND443_15380 PF04222 Protein of unknown function (DUF416) ND443_15385 PF04493 Endonuclease V ND443_15390 PF01208 Uroporphyrinogen decarboxylase (URO-D) ND443_15395 PF00293 NUDIX domain ND443_15395 PF09297 NADH pyrophosphatase zinc ribbon domain ND443_15400 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ND443_15405 PF01964 Radical SAM ThiC family ND443_15405 PF13667 ThiC-associated domain ND443_15410 PF02581 Thiamine monophosphate synthase ND443_15415 PF00899 ThiF family ND443_15420 PF02597 ThiS family ND443_15425 PF05690 Thiazole biosynthesis protein ThiG ND443_15430 PF06968 Biotin and Thiamin Synthesis associated domain ND443_15430 PF04055 Radical SAM superfamily ND443_15435 PF04997 RNA polymerase Rpb1, domain 1 ND443_15435 PF04983 RNA polymerase Rpb1, domain 3 ND443_15435 PF00623 RNA polymerase Rpb1, domain 2 ND443_15435 PF04998 RNA polymerase Rpb1, domain 5 ND443_15435 PF05000 RNA polymerase Rpb1, domain 4 ND443_15440 PF04565 RNA polymerase Rpb2, domain 3 ND443_15440 PF10385 RNA polymerase beta subunit external 1 domain ND443_15440 PF04563 RNA polymerase beta subunit ND443_15440 PF00562 RNA polymerase Rpb2, domain 6 ND443_15440 PF04560 RNA polymerase Rpb2, domain 7 ND443_15440 PF04561 RNA polymerase Rpb2, domain 2 ND443_15445 PF00542 Ribosomal protein L7/L12 C-terminal domain ND443_15445 PF16320 Ribosomal protein L7/L12 dimerisation domain ND443_15450 PF00466 Ribosomal protein L10 ND443_15455 PF00687 Ribosomal protein L1p/L10e family ND443_15460 PF00298 Ribosomal protein L11, RNA binding domain ND443_15460 PF03946 Ribosomal protein L11, N-terminal domain ND443_15465 PF00467 KOW motif ND443_15465 PF02357 Transcription termination factor nusG ND443_15470 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ND443_15475 PF00009 Elongation factor Tu GTP binding domain ND443_15475 PF03144 Elongation factor Tu domain 2 ND443_15475 PF03143 Elongation factor Tu C-terminal domain ND443_15500 PF00485 Phosphoribulokinase / Uridine kinase family ND443_15505 PF03099 Biotin/lipoate A/B protein ligase family ND443_15505 PF08279 HTH domain ND443_15505 PF02237 Biotin protein ligase C terminal domain ND443_15510 PF01565 FAD binding domain ND443_15510 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ND443_15535 PF12724 Flavodoxin domain ND443_15540 PF02386 Cation transport protein ND443_15545 PF09186 Domain of unknown function (DUF1949) ND443_15545 PF01205 Uncharacterized protein family UPF0029 ND443_15550 PF00557 Metallopeptidase family M24 ND443_15555 PF00378 Enoyl-CoA hydratase/isomerase ND443_15555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND443_15555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND443_15560 PF02803 Thiolase, C-terminal domain ND443_15560 PF00108 Thiolase, N-terminal domain ND443_15565 PF00970 Oxidoreductase FAD-binding domain ND443_15565 PF00175 Oxidoreductase NAD-binding domain ND443_15570 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ND443_15580 PF02357 Transcription termination factor nusG ND443_15585 PF00490 Delta-aminolevulinic acid dehydratase ND443_15590 PF01026 TatD related DNase ND443_15595 PF00902 Sec-independent protein translocase protein (TatC) ND443_15605 PF02416 mttA/Hcf106 family ND443_15610 PF03109 ABC1 family ND443_15615 PF02036 SCP-2 sterol transfer family ND443_15620 PF01209 ubiE/COQ5 methyltransferase family ND443_15625 PF02646 RmuC family ND443_15630 PF09335 SNARE associated Golgi protein ND443_15635 PF13722 5TM C-terminal transporter carbon starvation CstA ND443_15635 PF02554 Carbon starvation protein CstA ND443_15645 PF01048 Phosphorylase superfamily ND443_15650 PF01738 Dienelactone hydrolase family ND443_15655 PF01717 Cobalamin-independent synthase, Catalytic domain ND443_15655 PF08267 Cobalamin-independent synthase, N-terminal domain ND443_15660 PF03466 LysR substrate binding domain ND443_15660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_15665 PF00892 EamA-like transporter family ND443_15675 PF03009 Glycerophosphoryl diester phosphodiesterase family ND443_15680 PF17912 MalK OB fold domain ND443_15680 PF00005 ABC transporter ND443_15685 PF00528 Binding-protein-dependent transport system inner membrane component ND443_15690 PF00528 Binding-protein-dependent transport system inner membrane component ND443_15695 PF13416 Bacterial extracellular solute-binding protein ND443_15730 PF00005 ABC transporter ND443_15735 PF00005 ABC transporter ND443_15735 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND443_15740 PF11862 Domain of unknown function (DUF3382) ND443_15740 PF02653 Branched-chain amino acid transport system / permease component ND443_15745 PF02653 Branched-chain amino acid transport system / permease component ND443_15750 PF13458 Periplasmic binding protein ND443_15755 PF12568 Acetyltransferase (GNAT) domain, PanZ ND443_15760 PF02595 Glycerate kinase family ND443_15765 PF02447 GntP family permease ND443_15770 PF05651 Putative sugar diacid recognition ND443_15770 PF17853 GGDEF-like domain ND443_15770 PF13556 PucR C-terminal helix-turn-helix domain ND443_15775 PF04542 Sigma-70 region 2 ND443_15775 PF04545 Sigma-70, region 4 ND443_15775 PF00140 Sigma-70 factor, region 1.2 ND443_15780 PF18075 FtsX extracellular domain ND443_15780 PF02687 FtsX-like permease family ND443_15785 PF00005 ABC transporter ND443_15790 PF02881 SRP54-type protein, helical bundle domain ND443_15790 PF00448 SRP54-type protein, GTPase domain ND443_15790 PF02881 SRP54-type protein, helical bundle domain ND443_15790 PF00448 SRP54-type protein, GTPase domain ND443_15800 PF06611 Protein of unknown function (DUF1145) ND443_15815 PF07947 YhhN family ND443_15820 PF00403 Heavy-metal-associated domain ND443_15825 PF01206 Sulfurtransferase TusA ND443_15830 PF02592 Putative vitamin uptake transporter ND443_15835 PF08786 DcrB ND443_15840 PF13183 4Fe-4S dicluster domain ND443_15840 PF02754 Cysteine-rich domain ND443_15845 PF00890 FAD binding domain ND443_15850 PF01266 FAD dependent oxidoreductase ND443_15850 PF04324 BFD-like [2Fe-2S] binding domain ND443_15860 PF07690 Major Facilitator Superfamily ND443_15865 PF03009 Glycerophosphoryl diester phosphodiesterase family ND443_15875 PF12146 Serine aminopeptidase, S33 ND443_15880 PF01810 LysE type translocator ND443_15885 PF00270 DEAD/DEAH box helicase ND443_15885 PF00570 HRDC domain ND443_15885 PF16124 RecQ zinc-binding ND443_15885 PF09382 RQC domain ND443_15885 PF00271 Helicase conserved C-terminal domain ND443_15890 PF02253 Phospholipase A1 ND443_15895 PF03061 Thioesterase superfamily ND443_15900 PF00892 EamA-like transporter family ND443_15905 PF01544 CorA-like Mg2+ transporter protein ND443_15915 PF09370 Phosphoenolpyruvate hydrolase-like ND443_15930 PF13361 UvrD-like helicase C-terminal domain ND443_15930 PF00580 UvrD/REP helicase N-terminal domain ND443_15935 PF13419 Haloacid dehalogenase-like hydrolase ND443_15940 PF02899 Phage integrase, N-terminal SAM-like domain ND443_15940 PF00589 Phage integrase family ND443_15945 PF04340 Protein of unknown function, DUF484 ND443_15950 PF01678 Diaminopimelate epimerase ND443_15955 PF13627 Prokaryotic lipoprotein-attachment site ND443_15960 PF01491 Frataxin-like domain ND443_15965 PF12633 Adenylate cyclase NT domain ND443_15965 PF01295 Adenylate cyclase, class-I ND443_15970 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ND443_15970 PF03900 Porphobilinogen deaminase, C-terminal domain ND443_15975 PF02602 Uroporphyrinogen-III synthase HemD ND443_15980 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ND443_15985 PF07719 Tetratricopeptide repeat ND443_15985 PF07219 HemY protein N-terminus ND443_16015 PF00324 Amino acid permease ND443_16020 PF03808 Glycosyl transferase WecB/TagA/CpsF family ND443_16025 PF06899 WzyE protein, O-antigen assembly polymerase ND443_16030 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ND443_16035 PF01943 Polysaccharide biosynthesis protein ND443_16040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND443_16050 PF00483 Nucleotidyl transferase ND443_16055 PF16363 GDP-mannose 4,6 dehydratase ND443_16060 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND443_16060 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND443_16060 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND443_16065 PF02350 UDP-N-acetylglucosamine 2-epimerase ND443_16070 PF02706 Chain length determinant protein ND443_16075 PF00953 Glycosyl transferase family 4 ND443_16080 PF07497 Rho termination factor, RNA-binding domain ND443_16080 PF07498 Rho termination factor, N-terminal domain ND443_16080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND443_16085 PF00085 Thioredoxin ND443_16090 PF00270 DEAD/DEAH box helicase ND443_16090 PF00271 Helicase conserved C-terminal domain ND443_16095 PF02541 Ppx/GppA phosphatase family ND443_16100 PF00580 UvrD/REP helicase N-terminal domain ND443_16100 PF13361 UvrD-like helicase C-terminal domain ND443_16110 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ND443_16110 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ND443_16115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_16115 PF03466 LysR substrate binding domain ND443_16120 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND443_16120 PF18416 N-acetylglucosamine binding protein domain 2 ND443_16125 PF00585 C-terminal regulatory domain of Threonine dehydratase ND443_16125 PF00291 Pyridoxal-phosphate dependent enzyme ND443_16130 PF00920 Dehydratase family ND443_16135 PF01063 Amino-transferase class IV ND443_16145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND443_16145 PF00205 Thiamine pyrophosphate enzyme, central domain ND443_16145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND443_16150 PF08046 IlvGEDA operon leader peptide ND443_16155 PF01078 Magnesium chelatase, subunit ChlI ND443_16155 PF13335 Magnesium chelatase, subunit ChlI C-terminal ND443_16160 PF04219 Protein of unknown function, DUF ND443_16165 PF03466 LysR substrate binding domain ND443_16165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_16215 PF01177 Asp/Glu/Hydantoin racemase ND443_16220 PF00593 TonB dependent receptor ND443_16220 PF07715 TonB-dependent Receptor Plug Domain ND443_16225 PF05958 tRNA (Uracil-5-)-methyltransferase ND443_16230 PF07226 Protein of unknown function (DUF1422) ND443_16235 PF00440 Bacterial regulatory proteins, tetR family ND443_16240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND443_16240 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND443_16245 PF03466 LysR substrate binding domain ND443_16245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_16250 PF08534 Redoxin ND443_16250 PF00462 Glutaredoxin ND443_16255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND443_16255 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND443_16275 PF00529 HlyD membrane-fusion protein of T1SS ND443_16280 PF00005 ABC transporter ND443_16280 PF00664 ABC transporter transmembrane region ND443_16290 PF07715 TonB-dependent Receptor Plug Domain ND443_16290 PF00593 TonB dependent receptor ND443_16295 PF14698 Argininosuccinate lyase C-terminal ND443_16295 PF00206 Lyase ND443_16300 PF00764 Arginosuccinate synthase ND443_16305 PF00696 Amino acid kinase family ND443_16310 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND443_16310 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND443_16315 PF07687 Peptidase dimerisation domain ND443_16315 PF01546 Peptidase family M20/M25/M40 ND443_16320 PF00311 Phosphoenolpyruvate carboxylase ND443_16330 PF02219 Methylenetetrahydrofolate reductase ND443_16350 PF00696 Amino acid kinase family ND443_16350 PF00742 Homoserine dehydrogenase ND443_16350 PF03447 Homoserine dehydrogenase, NAD binding domain ND443_16355 PF01053 Cys/Met metabolism PLP-dependent enzyme ND443_16360 PF01340 Met Apo-repressor, MetJ ND443_16365 PF01197 Ribosomal protein L31 ND443_16370 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ND443_16370 PF18074 Primosomal protein N C-terminal domain ND443_16370 PF17764 3′ DNA-binding domain (3′BD) ND443_16370 PF00271 Helicase conserved C-terminal domain ND443_16370 PF00270 DEAD/DEAH box helicase ND443_16375 PF00356 Bacterial regulatory proteins, lacI family ND443_16380 PF05036 Sporulation related domain ND443_16385 PF00227 Proteasome subunit ND443_16390 PF00004 ATPase family associated with various cellular activities (AAA) ND443_16390 PF10431 C-terminal, D2-small domain, of ClpB protein ND443_16390 PF07724 AAA domain (Cdc48 subfamily) ND443_16395 PF01040 UbiA prenyltransferase family ND443_16400 PF03737 Aldolase/RraA ND443_16405 PF06005 Cell division protein ZapB ND443_16410 PF00230 Major intrinsic protein ND443_16415 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND443_16415 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND443_16420 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ND443_16425 PF07690 Major Facilitator Superfamily ND443_16430 PF00175 Oxidoreductase NAD-binding domain ND443_16430 PF00970 Oxidoreductase FAD-binding domain ND443_16435 PF05656 Protein of unknown function (DUF805) ND443_16440 PF07305 Protein of unknown function (DUF1454) ND443_16445 PF00121 Triosephosphate isomerase ND443_16455 PF00365 Phosphofructokinase ND443_16460 PF01545 Cation efflux family ND443_16460 PF16916 Dimerisation domain of Zinc Transporter ND443_16465 PF07813 LTXXQ motif family protein ND443_16470 PF00486 Transcriptional regulatory protein, C terminal ND443_16470 PF00072 Response regulator receiver domain ND443_16475 PF16527 Two-component sensor protein CpxA, periplasmic domain ND443_16475 PF00672 HAMP domain ND443_16475 PF00512 His Kinase A (phospho-acceptor) domain ND443_16475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_16480 PF00588 SpoU rRNA Methylase family ND443_16485 PF06426 Serine acetyltransferase, N-terminal ND443_16485 PF00132 Bacterial transferase hexapeptide (six repeats) ND443_16490 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ND443_16490 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ND443_16495 PF02556 Preprotein translocase subunit SecB ND443_16500 PF00462 Glutaredoxin ND443_16505 PF00581 Rhodanese-like domain ND443_16510 PF01676 Metalloenzyme superfamily ND443_16510 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ND443_16515 PF01551 Peptidase family M23 ND443_16520 PF04748 Divergent polysaccharide deacetylase ND443_16525 PF08240 Alcohol dehydrogenase GroES-like domain ND443_16525 PF00107 Zinc-binding dehydrogenase ND443_16530 PF00155 Aminotransferase class I and II ND443_16535 PF01370 NAD dependent epimerase/dehydratase family ND443_16540 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND443_16545 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND443_16550 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ND443_16555 PF00535 Glycosyl transferase family 2 ND443_16560 PF01467 Cytidylyltransferase-like ND443_16565 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ND443_16565 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ND443_16565 PF06827 Zinc finger found in FPG and IleRS ND443_16570 PF00471 Ribosomal protein L33 ND443_16575 PF00830 Ribosomal L28 family ND443_16580 PF04002 RadC-like JAB domain ND443_16585 PF02441 Flavoprotein ND443_16585 PF04127 DNA / pantothenate metabolism flavoprotein ND443_16590 PF00692 dUTPase ND443_16595 PF00440 Bacterial regulatory proteins, tetR family ND443_16600 PF00156 Phosphoribosyl transferase domain ND443_16605 PF01138 3' exoribonuclease family, domain 1 ND443_16605 PF03725 3' exoribonuclease family, domain 2 ND443_16610 PF03755 YicC-like family, N-terminal region ND443_16610 PF08340 Domain of unknown function (DUF1732) ND443_16620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND443_16620 PF03466 LysR substrate binding domain ND443_16625 PF00990 Diguanylate cyclase, GGDEF domain ND443_16625 PF13426 PAS domain ND443_16625 PF00563 EAL domain ND443_16630 PF00378 Enoyl-CoA hydratase/isomerase ND443_16635 PF07662 Na+ dependent nucleoside transporter C-terminus ND443_16635 PF07670 Nucleoside recognition ND443_16635 PF01773 Na+ dependent nucleoside transporter N-terminus ND443_16645 PF03458 UPF0126 domain ND443_16650 PF03120 NAD-dependent DNA ligase OB-fold domain ND443_16650 PF01653 NAD-dependent DNA ligase adenylation domain ND443_16655 PF00625 Guanylate kinase ND443_16660 PF01192 RNA polymerase Rpb6 ND443_16665 PF13291 ACT domain ND443_16665 PF04607 Region found in RelA / SpoT proteins ND443_16665 PF02824 TGS domain ND443_16670 PF12105 SpoU, rRNA methylase, C-terminal ND443_16670 PF00588 SpoU rRNA Methylase family ND443_16675 PF17191 RecG wedge domain ND443_16675 PF00271 Helicase conserved C-terminal domain ND443_16675 PF00270 DEAD/DEAH box helicase ND443_16680 PF03616 Sodium/glutamate symporter ND443_16685 PF00860 Permease family ND443_16690 PF05170 AsmA family ND443_16695 PF09500 Putative thioesterase (yiiD_Cterm) ND443_16695 PF00583 Acetyltransferase (GNAT) family ND443_16700 PF02580 D-Tyr-tRNA(Tyr) deacylase ND443_16705 PF03631 Virulence factor BrkB ND443_16710 PF13419 Haloacid dehalogenase-like hydrolase ND443_16715 PF00679 Elongation factor G C-terminus ND443_16715 PF00009 Elongation factor Tu GTP binding domain ND443_16715 PF03144 Elongation factor Tu domain 2 ND443_16720 PF03951 Glutamine synthetase, beta-Grasp domain ND443_16720 PF00120 Glutamine synthetase, catalytic domain ND443_16725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND443_16725 PF00512 His Kinase A (phospho-acceptor) domain ND443_16725 PF00989 PAS fold ND443_16730 PF00072 Response regulator receiver domain ND443_16730 PF02954 Bacterial regulatory protein, Fis family ND443_16730 PF00158 Sigma-54 interaction domain ND443_16735 PF04055 Radical SAM superfamily ND443_16735 PF06969 HemN C-terminal domain ND443_16740 PF04220 Der GTPase activator (YihI) ND443_16745 PF01926 50S ribosome-binding GTPase ND443_16750 PF00476 DNA polymerase family A ND443_16750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND443_16750 PF01367 5'-3' exonuclease, C-terminal SAM fold ND443_16750 PF01612 3'-5' exonuclease ND443_16755 PF01323 DSBA-like thioredoxin domain ND443_16760 PF01636 Phosphotransferase enzyme family ND443_16765 PF06288 Protein of unknown function (DUF1040) ND443_16770 PF12804 MobA-like NTP transferase domain ND443_16775 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ND443_16800 PF07729 FCD domain ND443_16800 PF00392 Bacterial regulatory proteins, gntR family ND443_16805 PF00356 Bacterial regulatory proteins, lacI family ND443_16810 PF00294 pfkB family carbohydrate kinase ND443_16815 PF13407 Periplasmic binding protein domain ND443_16820 PF02653 Branched-chain amino acid transport system / permease component ND443_16825 PF00005 ABC transporter ND443_16830 PF05025 RbsD / FucU transport protein family ND443_16835 PF02705 K+ potassium transporter ND443_16840 PF12592 Protein of unknown function (DUF3763) ND443_16840 PF07728 AAA domain (dynein-related subfamily) ND443_16840 PF17868 AAA lid domain ND443_16845 PF05762 VWA domain containing CoxE-like protein ND443_16855 PF03590 Aspartate-ammonia ligase ND443_16860 PF01037 Lrp/AsnC ligand binding domain ND443_16865 PF00258 Flavodoxin ND443_16870 PF01134 Glucose inhibited division protein A ND443_16870 PF13932 GidA associated domain ND443_16875 PF02527 rRNA small subunit methyltransferase G ND443_16880 PF03899 ATP synthase I chain ND443_16885 PF00119 ATP synthase A chain ND443_16890 PF00137 ATP synthase subunit C ND443_16895 PF00430 ATP synthase B/B' CF(0) ND443_16900 PF00213 ATP synthase delta (OSCP) subunit ND443_16905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND443_16905 PF00306 ATP synthase alpha/beta chain, C terminal domain ND443_16905 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND443_16910 PF00231 ATP synthase ND443_16915 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND443_16915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND443_16920 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ND443_16920 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ND443_16925 PF12804 MobA-like NTP transferase domain ND443_16925 PF00132 Bacterial transferase hexapeptide (six repeats) ND443_16930 PF01380 SIS domain ND443_16935 PF12849 PBP superfamily domain ND443_16940 PF00528 Binding-protein-dependent transport system inner membrane component ND443_16945 PF00528 Binding-protein-dependent transport system inner membrane component ND443_16950 PF00005 ABC transporter ND443_16955 PF01895 PhoU domain ND443_16960 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND443_16965 PF00528 Binding-protein-dependent transport system inner membrane component ND443_16970 PF00528 Binding-protein-dependent transport system inner membrane component ND443_16975 PF00860 Permease family ND443_16980 PF00672 HAMP domain ND443_16980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND443_16980 PF02203 Tar ligand binding domain homologue ND443_16990 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND443_16990 PF02753 Pili assembly chaperone PapD, C-terminal domain ND443_16995 PF00577 Outer membrane usher protein ND443_16995 PF13953 PapC C-terminal domain ND443_16995 PF13954 PapC N-terminal domain ND443_17005 PF01926 50S ribosome-binding GTPase ND443_17005 PF12631 MnmE helical domain ND443_17005 PF10396 GTP-binding protein TrmE N-terminus ND443_17010 PF02096 60Kd inner membrane protein ND443_17010 PF14849 YidC periplasmic domain ND443_17015 PF01809 Putative membrane protein insertion efficiency factor ND443_17020 PF00825 Ribonuclease P ND443_17025 PF00468 Ribosomal protein L34 ND443_17040 PF02796 Helix-turn-helix domain of resolvase ND443_17040 PF00239 Resolvase, N terminal domain ND443_17050 PF13614 AAA domain ND443_17055 PF06406 StbA protein ND443_17120 PF01381 Helix-turn-helix ND443_17140 PF18821 Large polyvalent protein-associated domain 7 ND443_17140 PF03432 Relaxase/Mobilisation nuclease domain ND443_17245 PF08401 Domain of unknown function (DUF1738) ND443_17245 PF18818 Metallopeptidase superfamily domain ND443_17245 PF13362 Toprim domain ND443_17255 PF00437 Type II/IV secretion system protein ND443_17270 PF04917 Bacterial shufflon protein, N-terminal constant region ND443_17280 PF01464 Transglycosylase SLT domain ND443_17295 PF00437 Type II/IV secretion system protein ND443_17380 PF02796 Helix-turn-helix domain of resolvase ND443_17380 PF00239 Resolvase, N terminal domain ND443_17400 PF00465 Iron-containing alcohol dehydrogenase ND443_17405 PF02583 Metal-sensitive transcriptional repressor ND443_17410 PF08240 Alcohol dehydrogenase GroES-like domain ND443_17410 PF00107 Zinc-binding dehydrogenase ND443_17420 PF00756 Putative esterase ND443_17435 PF13610 DDE domain ND443_17440 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ND443_17445 PF02796 Helix-turn-helix domain of resolvase ND443_17445 PF00239 Resolvase, N terminal domain ND443_17450 PF13610 DDE domain