locus-tag class description ND446_00005 PF00308 Bacterial dnaA protein ND446_00005 PF08299 Bacterial dnaA protein helix-turn-helix ND446_00005 PF11638 DnaA N-terminal domain ND446_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ND446_00010 PF02767 DNA polymerase III beta subunit, central domain ND446_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ND446_00015 PF02463 RecF/RecN/SMC N terminal domain ND446_00020 PF00204 DNA gyrase B ND446_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ND446_00020 PF18053 DNA gyrase B subunit insert domain ND446_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_00020 PF01751 Toprim domain ND446_00030 PF12566 Protein of unknown function (DUF3748) ND446_00030 PF07676 WD40-like Beta Propeller Repeat ND446_00035 PF07119 Protein of unknown function (DUF1375) ND446_00040 PF00011 Hsp20/alpha crystallin family ND446_00045 PF00011 Hsp20/alpha crystallin family ND446_00050 PF06826 Predicted Permease Membrane Region ND446_00050 PF02080 TrkA-C domain ND446_00055 PF00155 Aminotransferase class I and II ND446_00060 PF13488 Glycine zipper ND446_00060 PF00691 OmpA family ND446_00085 PF03352 Methyladenine glycosylase ND446_00095 PF02091 Glycyl-tRNA synthetase alpha subunit ND446_00100 PF05746 DALR anticodon binding domain ND446_00100 PF02092 Glycyl-tRNA synthetase beta subunit ND446_00105 PF11254 Protein of unknown function (DUF3053) ND446_00140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND446_00140 PF02378 Phosphotransferase system, EIIC ND446_00140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND446_00145 PF01232 Mannitol dehydrogenase Rossmann domain ND446_00145 PF08125 Mannitol dehydrogenase C-terminal domain ND446_00150 PF05068 Mannitol repressor ND446_00155 PF10928 Protein of unknown function (DUF2810) ND446_00160 PF03475 3-alpha domain ND446_00160 PF03473 MOSC domain ND446_00165 PF00672 HAMP domain ND446_00165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND446_00165 PF02203 Tar ligand binding domain homologue ND446_00170 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND446_00170 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND446_00175 PF02634 FdhD/NarQ family ND446_00185 PF09163 Formate dehydrogenase N, transmembrane ND446_00185 PF13247 4Fe-4S dicluster domain ND446_00190 PF01292 Prokaryotic cytochrome b561 ND446_00195 PF04216 Protein involved in formate dehydrogenase formation ND446_00200 PF03841 L-seryl-tRNA selenium transferase ND446_00200 PF12390 Selenocysteine synthase N terminal ND446_00205 PF09106 Elongation factor SelB, winged helix ND446_00205 PF09107 Elongation factor SelB, winged helix ND446_00205 PF03144 Elongation factor Tu domain 2 ND446_00205 PF00009 Elongation factor Tu GTP binding domain ND446_00210 PF01427 D-ala-D-ala dipeptidase ND446_00215 PF07690 Major Facilitator Superfamily ND446_00220 PF01757 Acyltransferase family ND446_00230 PF14659 Phage integrase, N-terminal SAM-like domain ND446_00230 PF00589 Phage integrase family ND446_00230 PF13356 Arm DNA-binding domain ND446_00240 PF04606 Ogr/Delta-like zinc finger ND446_00265 PF01175 Urocanase Rossmann-like domain ND446_00265 PF17392 Urocanase C-terminal domain ND446_00265 PF17391 Urocanase N-terminal domain ND446_00270 PF00221 Aromatic amino acid lyase ND446_00275 PF00324 Amino acid permease ND446_00285 PF12146 Serine aminopeptidase, S33 ND446_00290 PF00884 Sulfatase ND446_00290 PF08019 Phosphoethanolamine transferase EptA/EptB ND446_00295 PF00072 Response regulator receiver domain ND446_00295 PF00196 Bacterial regulatory proteins, luxR family ND446_00300 PF05231 MASE1 ND446_00300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_00300 PF07730 Histidine kinase ND446_00305 PF07690 Major Facilitator Superfamily ND446_00315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND446_00320 PF00528 Binding-protein-dependent transport system inner membrane component ND446_00325 PF00528 Binding-protein-dependent transport system inner membrane component ND446_00325 PF12911 N-terminal TM domain of oligopeptide transport permease C ND446_00330 PF00005 ABC transporter ND446_00330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND446_00335 PF00005 ABC transporter ND446_00335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND446_00340 PF11658 Cellulose biosynthesis protein BcsG ND446_00345 PF11120 Cellulose biosynthesis protein BcsF ND446_00350 PF10995 Cellulose biosynthesis GIL ND446_00360 PF06564 Cellulose biosynthesis protein BcsQ ND446_00365 PF00535 Glycosyl transferase family 2 ND446_00365 PF07238 PilZ domain ND446_00365 PF03552 Cellulose synthase ND446_00370 PF03170 Bacterial cellulose synthase subunit ND446_00375 PF01270 Glycosyl hydrolases family 8 ND446_00380 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ND446_00385 PF00672 HAMP domain ND446_00385 PF00990 Diguanylate cyclase, GGDEF domain ND446_00385 PF17154 Gammaproteobacterial periplasmic sensor domain ND446_00385 PF00563 EAL domain ND446_00390 PF00375 Sodium:dicarboxylate symporter family ND446_00395 PF00675 Insulinase (Peptidase family M16) ND446_00395 PF05193 Peptidase M16 inactive domain ND446_00400 PF00294 pfkB family carbohydrate kinase ND446_00405 PF01361 Tautomerase enzyme ND446_00410 PF00563 EAL domain ND446_00420 PF03631 Virulence factor BrkB ND446_00425 PF03466 LysR substrate binding domain ND446_00425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_00430 PF00375 Sodium:dicarboxylate symporter family ND446_00435 PF01053 Cys/Met metabolism PLP-dependent enzyme ND446_00440 PF09134 Invasin, domain 3 ND446_00440 PF07979 Intimin C-type lectin domain ND446_00440 PF02369 Bacterial Ig-like domain (group 1) ND446_00440 PF11924 Inverse autotransporter, beta-domain ND446_00445 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND446_00445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND446_00450 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ND446_00455 PF01432 Peptidase family M3 ND446_00460 PF04445 Putative SAM-dependent methyltransferase ND446_00465 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ND446_00465 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ND446_00470 PF00582 Universal stress protein family ND446_00475 PF10625 Universal stress protein B (UspB) ND446_00480 PF01384 Phosphate transporter family ND446_00490 PF01810 LysE type translocator ND446_00495 PF00583 Acetyltransferase (GNAT) family ND446_00500 PF17954 Quercetinase C-terminal cupin domain ND446_00500 PF02678 Pirin ND446_00505 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND446_00505 PF00356 Bacterial regulatory proteins, lacI family ND446_00510 PF02447 GntP family permease ND446_00515 PF01202 Shikimate kinase ND446_00520 PF01914 MarC family integral membrane protein ND446_00525 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND446_00525 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND446_00530 PF07694 5TMR of 5TMR-LYT ND446_00530 PF06580 Histidine kinase ND446_00535 PF00128 Alpha amylase, catalytic domain ND446_00535 PF02806 Alpha amylase, C-terminal all-beta domain ND446_00535 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND446_00540 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND446_00540 PF18390 Glycogen debranching enzyme C-terminal domain ND446_00540 PF00128 Alpha amylase, catalytic domain ND446_00545 PF00483 Nucleotidyl transferase ND446_00550 PF08323 Starch synthase catalytic domain ND446_00550 PF00534 Glycosyl transferases group 1 ND446_00555 PF00343 Carbohydrate phosphorylase ND446_00560 PF01266 FAD dependent oxidoreductase ND446_00560 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ND446_00565 PF00455 DeoR C terminal sensor domain ND446_00565 PF08220 DeoR-like helix-turn-helix domain ND446_00570 PF01694 Rhomboid family ND446_00570 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ND446_00575 PF00581 Rhodanese-like domain ND446_00580 PF17874 MalT-like TPR region ND446_00580 PF00196 Bacterial regulatory proteins, luxR family ND446_00585 PF00343 Carbohydrate phosphorylase ND446_00590 PF02446 4-alpha-glucanotransferase ND446_00595 PF01521 Iron-sulphur cluster biosynthesis ND446_00595 PF01106 NifU-like domain ND446_00600 PF00156 Phosphoribosyl transferase domain ND446_00605 PF00561 alpha/beta hydrolase fold ND446_00615 PF09012 FeoC like transcriptional regulator ND446_00620 PF07670 Nucleoside recognition ND446_00620 PF02421 Ferrous iron transport protein B ND446_00620 PF17910 FeoB cytosolic helical domain ND446_00620 PF07664 Ferrous iron transport protein B C terminus ND446_00625 PF04023 FeoA domain ND446_00630 PF16921 Tex protein YqgF-like domain ND446_00630 PF09371 Tex-like protein N-terminal domain ND446_00630 PF00575 S1 RNA binding domain ND446_00630 PF17674 HHH domain ND446_00655 PF01272 Transcription elongation factor, GreA/GreB, C-term ND446_00655 PF03449 Transcription elongation factor, N-terminal ND446_00660 PF00072 Response regulator receiver domain ND446_00660 PF00486 Transcriptional regulatory protein, C terminal ND446_00665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_00665 PF00672 HAMP domain ND446_00665 PF00512 His Kinase A (phospho-acceptor) domain ND446_00670 PF01293 Phosphoenolpyruvate carboxykinase ND446_00675 PF01430 Hsp33 protein ND446_00680 PF01479 S4 domain ND446_00685 PF13419 Haloacid dehalogenase-like hydrolase ND446_00690 PF07095 Intracellular growth attenuator protein IgaA ND446_00695 PF00293 NUDIX domain ND446_00700 PF00905 Penicillin binding protein transpeptidase domain ND446_00700 PF00912 Transglycosylase ND446_00700 PF17092 Penicillin-binding protein OB-like domain ND446_00725 PF03958 Bacterial type II/III secretion system short domain ND446_00725 PF00263 Bacterial type II and III secretion system protein ND446_00730 PF01202 Shikimate kinase ND446_00735 PF01761 3-dehydroquinate synthase ND446_00740 PF05036 Sporulation related domain ND446_00745 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND446_00750 PF00834 Ribulose-phosphate 3 epimerase family ND446_00755 PF13419 Haloacid dehalogenase-like hydrolase ND446_00760 PF00579 tRNA synthetases class I (W and Y) ND446_00765 PF10414 Sirohaem synthase dimerisation region ND446_00765 PF14824 Sirohaem biosynthesis protein central ND446_00765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND446_00770 PF01226 Formate/nitrite transporter ND446_00775 PF13806 Rieske-like [2Fe-2S] domain ND446_00780 PF18267 Rubredoxin NAD+ reductase C-terminal domain ND446_00780 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND446_00780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND446_00780 PF04324 BFD-like [2Fe-2S] binding domain ND446_00780 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND446_00785 PF07969 Amidohydrolase family ND446_00790 PF07690 Major Facilitator Superfamily ND446_00805 PF00356 Bacterial regulatory proteins, lacI family ND446_00810 PF02056 Family 4 glycosyl hydrolase ND446_00810 PF11975 Family 4 glycosyl hydrolase C-terminal domain ND446_00815 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND446_00820 PF00117 Glutamine amidotransferase class-I ND446_00825 PF00202 Aminotransferase class-III ND446_00830 PF12805 FUSC-like inner membrane protein yccS ND446_00835 PF13545 Crp-like helix-turn-helix domain ND446_00835 PF00027 Cyclic nucleotide-binding domain ND446_00840 PF02566 OsmC-like protein ND446_00860 PF00156 Phosphoribosyl transferase domain ND446_00865 PF00291 Pyridoxal-phosphate dependent enzyme ND446_00870 PF00485 Phosphoribulokinase / Uridine kinase family ND446_00875 PF06794 Uncharacterised protein family (UPF0270) ND446_00880 PF00561 alpha/beta hydrolase fold ND446_00885 PF01810 LysE type translocator ND446_00890 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND446_00895 PF00535 Glycosyl transferase family 2 ND446_00900 PF12848 ABC transporter ND446_00900 PF00005 ABC transporter ND446_00905 PF02525 Flavodoxin-like fold ND446_00910 PF02254 TrkA-N domain ND446_00910 PF00999 Sodium/hydrogen exchanger family ND446_00915 PF09526 Probable metal-binding protein (DUF2387) ND446_00920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND446_00925 PF04102 SlyX ND446_00930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND446_00930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND446_00935 PF13309 HTH domain ND446_00935 PF08348 YheO-like PAS domain ND446_00940 PF02635 DsrE/DsrF-like family ND446_00945 PF02635 DsrE/DsrF-like family ND446_00950 PF04077 DsrH like protein ND446_00955 PF00164 Ribosomal protein S12/S23 ND446_00960 PF00177 Ribosomal protein S7p/S5e ND446_00965 PF00679 Elongation factor G C-terminus ND446_00965 PF14492 Elongation Factor G, domain II ND446_00965 PF03764 Elongation factor G, domain IV ND446_00965 PF00009 Elongation factor Tu GTP binding domain ND446_00965 PF03144 Elongation factor Tu domain 2 ND446_00970 PF03144 Elongation factor Tu domain 2 ND446_00970 PF03143 Elongation factor Tu C-terminal domain ND446_00970 PF00009 Elongation factor Tu GTP binding domain ND446_00975 PF04324 BFD-like [2Fe-2S] binding domain ND446_00980 PF00210 Ferritin-like domain ND446_00985 PF00338 Ribosomal protein S10p/S20e ND446_00990 PF00297 Ribosomal protein L3 ND446_00995 PF00573 Ribosomal protein L4/L1 family ND446_01000 PF00276 Ribosomal protein L23 ND446_01005 PF00181 Ribosomal Proteins L2, RNA binding domain ND446_01005 PF03947 Ribosomal Proteins L2, C-terminal domain ND446_01010 PF00203 Ribosomal protein S19 ND446_01015 PF00237 Ribosomal protein L22p/L17e ND446_01020 PF07650 KH domain ND446_01020 PF00189 Ribosomal protein S3, C-terminal domain ND446_01025 PF00252 Ribosomal protein L16p/L10e ND446_01030 PF00831 Ribosomal L29 protein ND446_01035 PF00366 Ribosomal protein S17 ND446_01040 PF00238 Ribosomal protein L14p/L23e ND446_01045 PF00467 KOW motif ND446_01045 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ND446_01050 PF00281 Ribosomal protein L5 ND446_01050 PF00673 ribosomal L5P family C-terminus ND446_01055 PF00253 Ribosomal protein S14p/S29e ND446_01060 PF00410 Ribosomal protein S8 ND446_01065 PF00347 Ribosomal protein L6 ND446_01070 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ND446_01075 PF00333 Ribosomal protein S5, N-terminal domain ND446_01075 PF03719 Ribosomal protein S5, C-terminal domain ND446_01080 PF00327 Ribosomal protein L30p/L7e ND446_01085 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ND446_01090 PF00344 SecY translocase ND446_01095 PF00444 Ribosomal protein L36 ND446_01100 PF00416 Ribosomal protein S13/S18 ND446_01105 PF00411 Ribosomal protein S11 ND446_01110 PF01479 S4 domain ND446_01110 PF00163 Ribosomal protein S4/S9 N-terminal domain ND446_01115 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ND446_01115 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ND446_01115 PF01000 RNA polymerase Rpb3/RpoA insert domain ND446_01120 PF01196 Ribosomal protein L17 ND446_01125 PF13411 MerR HTH family regulatory protein ND446_01130 PF03889 Alternative ribosome-rescue factor A ND446_01135 PF01741 Large-conductance mechanosensitive channel, MscL ND446_01140 PF02080 TrkA-C domain ND446_01140 PF02254 TrkA-N domain ND446_01145 PF01189 16S rRNA methyltransferase RsmB/F ND446_01145 PF01029 NusB family ND446_01150 PF00551 Formyl transferase ND446_01150 PF02911 Formyl transferase, C-terminal domain ND446_01155 PF01327 Polypeptide deformylase ND446_01160 PF17782 DprA winged helix domain ND446_01160 PF02481 DNA recombination-mediator protein A ND446_01165 PF04361 Protein of unknown function (DUF494) ND446_01170 PF01396 Topoisomerase DNA binding C4 zinc finger ND446_01175 PF01300 Telomere recombination ND446_01180 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ND446_01180 PF08501 Shikimate dehydrogenase substrate binding domain ND446_01180 PF01488 Shikimate / quinate 5-dehydrogenase ND446_01185 PF00132 Bacterial transferase hexapeptide (six repeats) ND446_01210 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ND446_01210 PF01565 FAD binding domain ND446_01215 PF08279 HTH domain ND446_01215 PF03099 Biotin/lipoate A/B protein ligase family ND446_01215 PF02237 Biotin protein ligase C terminal domain ND446_01220 PF00485 Phosphoribulokinase / Uridine kinase family ND446_01245 PF03144 Elongation factor Tu domain 2 ND446_01245 PF03143 Elongation factor Tu C-terminal domain ND446_01245 PF00009 Elongation factor Tu GTP binding domain ND446_01250 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ND446_01255 PF02357 Transcription termination factor nusG ND446_01255 PF00467 KOW motif ND446_01260 PF03946 Ribosomal protein L11, N-terminal domain ND446_01260 PF00298 Ribosomal protein L11, RNA binding domain ND446_01265 PF00687 Ribosomal protein L1p/L10e family ND446_01270 PF00466 Ribosomal protein L10 ND446_01275 PF00542 Ribosomal protein L7/L12 C-terminal domain ND446_01275 PF16320 Ribosomal protein L7/L12 dimerisation domain ND446_01280 PF04563 RNA polymerase beta subunit ND446_01280 PF04561 RNA polymerase Rpb2, domain 2 ND446_01280 PF10385 RNA polymerase beta subunit external 1 domain ND446_01280 PF00562 RNA polymerase Rpb2, domain 6 ND446_01280 PF04560 RNA polymerase Rpb2, domain 7 ND446_01280 PF04565 RNA polymerase Rpb2, domain 3 ND446_01285 PF04997 RNA polymerase Rpb1, domain 1 ND446_01285 PF00623 RNA polymerase Rpb1, domain 2 ND446_01285 PF05000 RNA polymerase Rpb1, domain 4 ND446_01285 PF04998 RNA polymerase Rpb1, domain 5 ND446_01285 PF04983 RNA polymerase Rpb1, domain 3 ND446_01290 PF04055 Radical SAM superfamily ND446_01290 PF06968 Biotin and Thiamin Synthesis associated domain ND446_01295 PF05690 Thiazole biosynthesis protein ThiG ND446_01300 PF02597 ThiS family ND446_01305 PF00899 ThiF family ND446_01310 PF02581 Thiamine monophosphate synthase ND446_01315 PF01964 Radical SAM ThiC family ND446_01315 PF13667 ThiC-associated domain ND446_01320 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ND446_01325 PF00293 NUDIX domain ND446_01325 PF09297 NADH pyrophosphatase zinc ribbon domain ND446_01330 PF01208 Uroporphyrinogen decarboxylase (URO-D) ND446_01335 PF04493 Endonuclease V ND446_01340 PF04222 Protein of unknown function (DUF416) ND446_01345 PF00216 Bacterial DNA-binding protein ND446_01350 PF07356 Protein of unknown function (DUF1481) ND446_01355 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ND446_01355 PF02843 Phosphoribosylglycinamide synthetase, C domain ND446_01355 PF02844 Phosphoribosylglycinamide synthetase, N domain ND446_01360 PF01808 AICARFT/IMPCHase bienzyme ND446_01360 PF02142 MGS-like domain ND446_01400 PF04204 Homoserine O-succinyltransferase ND446_01405 PF01274 Malate synthase ND446_01410 PF00463 Isocitrate lyase family ND446_01415 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ND446_01420 PF09339 IclR helix-turn-helix domain ND446_01420 PF01614 Bacterial transcriptional regulator ND446_01425 PF02310 B12 binding domain ND446_01425 PF02965 Vitamin B12 dependent methionine synthase, activation domain ND446_01425 PF00809 Pterin binding enzyme ND446_01425 PF02607 B12 binding domain ND446_01425 PF02574 Homocysteine S-methyltransferase ND446_01440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_01440 PF03466 LysR substrate binding domain ND446_01520 PF00004 ATPase family associated with various cellular activities (AAA) ND446_01520 PF16450 Proteasomal ATPase OB C-terminal domain ND446_01520 PF17758 Proteasomal ATPase OB N-terminal domain ND446_01530 PF04488 Glycosyltransferase sugar-binding region containing DXD motif ND446_01540 PF13332 Hemagglutinin repeat ND446_01540 PF05860 haemagglutination activity domain ND446_01545 PF17287 POTRA domain ND446_01545 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND446_01545 PF08479 POTRA domain, ShlB-type ND446_01550 PF00696 Amino acid kinase family ND446_01550 PF01842 ACT domain ND446_01555 PF00342 Phosphoglucose isomerase ND446_01560 PF06146 Phosphate-starvation-inducible E ND446_01565 PF00528 Binding-protein-dependent transport system inner membrane component ND446_01570 PF00528 Binding-protein-dependent transport system inner membrane component ND446_01570 PF14785 Maltose transport system permease protein MalF P2 domain ND446_01575 PF01547 Bacterial extracellular solute-binding protein ND446_01585 PF17912 MalK OB fold domain ND446_01585 PF00005 ABC transporter ND446_01590 PF02264 LamB porin ND446_01595 PF07148 Maltose operon periplasmic protein precursor (MalM) ND446_01600 PF04345 Chorismate lyase ND446_01605 PF01040 UbiA prenyltransferase family ND446_01610 PF01553 Acyltransferase ND446_01615 PF01219 Prokaryotic diacylglycerol kinase ND446_01620 PF01726 LexA DNA binding domain ND446_01620 PF00717 Peptidase S24-like ND446_01625 PF01475 Ferric uptake regulator family ND446_01630 PF01207 Dihydrouridine synthase (Dus) ND446_01635 PF09583 Phage shock protein G (Phageshock_PspG) ND446_01640 PF00107 Zinc-binding dehydrogenase ND446_01640 PF08240 Alcohol dehydrogenase GroES-like domain ND446_01645 PF00772 DnaB-like helicase N terminal domain ND446_01645 PF03796 DnaB-like helicase C terminal domain ND446_01650 PF00842 Alanine racemase, C-terminal domain ND446_01650 PF01168 Alanine racemase, N-terminal domain ND446_01655 PF00155 Aminotransferase class I and II ND446_01660 PF04237 YjbR ND446_01665 PF00005 ABC transporter ND446_01665 PF17755 UvrA DNA-binding domain ND446_01665 PF17760 UvrA interaction domain ND446_01670 PF00436 Single-strand binding protein family ND446_01680 PF00860 Permease family ND446_01685 PF00999 Sodium/hydrogen exchanger family ND446_01690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_01690 PF03466 LysR substrate binding domain ND446_01695 PF03788 LrgA family ND446_01700 PF04172 LrgB-like family ND446_01705 PF00484 Carbonic anhydrase ND446_01710 PF03279 Bacterial lipid A biosynthesis acyltransferase ND446_01720 PF02954 Bacterial regulatory protein, Fis family ND446_01725 PF01207 Dihydrouridine synthase (Dus) ND446_01735 PF00474 Sodium:solute symporter family ND446_01740 PF06196 Protein of unknown function (DUF997) ND446_01745 PF02785 Biotin carboxylase C-terminal domain ND446_01745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND446_01745 PF00289 Biotin carboxylase, N-terminal domain ND446_01750 PF00364 Biotin-requiring enzyme ND446_01755 PF01220 Dehydroquinase class II ND446_01760 PF01794 Ferric reductase like transmembrane component ND446_01765 PF00174 Oxidoreductase molybdopterin binding domain ND446_01770 PF08240 Alcohol dehydrogenase GroES-like domain ND446_01770 PF00107 Zinc-binding dehydrogenase ND446_01775 PF17157 Gammaproteobacterial periplasmic sensor domain ND446_01775 PF00990 Diguanylate cyclase, GGDEF domain ND446_01775 PF00563 EAL domain ND446_01785 PF04085 rod shape-determining protein MreC ND446_01790 PF04093 rod shape-determining protein MreD ND446_01795 PF02545 Maf-like protein ND446_01800 PF10150 Ribonuclease E/G family ND446_01800 PF00575 S1 RNA binding domain ND446_01805 PF13502 AsmA-like C-terminal region ND446_01805 PF13116 Protein of unknown function ND446_01810 PF00795 Carbon-nitrogen hydrolase ND446_01815 PF01523 Putative modulator of DNA gyrase ND446_01820 PF03466 LysR substrate binding domain ND446_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_01825 PF07869 Protein of unknown function (DUF1656) ND446_01830 PF13533 Biotin-lipoyl like ND446_01835 PF04632 Fusaric acid resistance protein family ND446_01840 PF00171 Aldehyde dehydrogenase family ND446_01845 PF00545 ribonuclease ND446_01850 PF01337 Barstar (barnase inhibitor) ND446_01855 PF04751 Protein of unknown function (DUF615) ND446_01860 PF01523 Putative modulator of DNA gyrase ND446_01865 PF07361 Cytochrome b562 ND446_01870 PF14760 Rnk N-terminus ND446_01870 PF01272 Transcription elongation factor, GreA/GreB, C-term ND446_01880 PF00689 Cation transporting ATPase, C-terminus ND446_01880 PF00690 Cation transporter/ATPase, N-terminus ND446_01885 PF00356 Bacterial regulatory proteins, lacI family ND446_01890 PF00367 phosphotransferase system, EIIB ND446_01890 PF02378 Phosphotransferase system, EIIC ND446_01895 PF00128 Alpha amylase, catalytic domain ND446_01895 PF11941 Domain of unknown function (DUF3459) ND446_01900 PF01042 Endoribonuclease L-PSP ND446_01905 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ND446_01905 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ND446_01910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND446_01910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND446_01915 PF00381 PTS HPr component phosphorylation site ND446_01920 PF03668 P-loop ATPase protein family ND446_01925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND446_01930 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND446_01935 PF04552 Sigma-54, DNA binding domain ND446_01935 PF00309 Sigma-54 factor, Activator interacting domain (AID) ND446_01935 PF04963 Sigma-54 factor, core binding domain ND446_01940 PF00005 ABC transporter ND446_01940 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND446_01945 PF03968 OstA-like protein ND446_01950 PF06835 Lipopolysaccharide-assembly, LptC-related ND446_01960 PF01380 SIS domain ND446_01960 PF00571 CBS domain ND446_01965 PF01699 Sodium/calcium exchanger protein ND446_01970 PF00005 ABC transporter ND446_01975 PF02405 Permease MlaE ND446_01980 PF02470 MlaD protein ND446_01985 PF05494 MlaC protein ND446_01990 PF13466 STAS domain ND446_01995 PF01722 BolA-like protein ND446_02000 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND446_02005 PF13180 PDZ domain ND446_02010 PF13180 PDZ domain ND446_02010 PF00595 PDZ domain ND446_02015 PF06295 Protein of unknown function (DUF1043) ND446_02020 PF03969 AFG1-like ATPase ND446_02025 PF00572 Ribosomal protein L13 ND446_02030 PF00380 Ribosomal protein S9/S16 ND446_02035 PF00043 Glutathione S-transferase, C-terminal domain ND446_02035 PF02798 Glutathione S-transferase, N-terminal domain ND446_02040 PF04386 Stringent starvation protein B ND446_02050 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ND446_02050 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND446_02055 PF00310 Glutamine amidotransferases class-II ND446_02055 PF04898 Glutamate synthase central domain ND446_02055 PF01645 Conserved region in glutamate synthase ND446_02055 PF01493 GXGXG motif ND446_02060 PF16199 Radical_SAM C-terminal domain ND446_02060 PF04055 Radical SAM superfamily ND446_02070 PF00512 His Kinase A (phospho-acceptor) domain ND446_02070 PF18415 Histidine kinase receptor ArcB trans-membrane domain ND446_02070 PF00989 PAS fold ND446_02070 PF00072 Response regulator receiver domain ND446_02070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_02070 PF01627 Hpt domain ND446_02080 PF00912 Transglycosylase ND446_02085 PF04972 BON domain ND446_02090 PF13580 SIS domain ND446_02095 PF02021 Uncharacterised protein family UPF0102 ND446_02100 PF04348 LppC putative lipoprotein ND446_02105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND446_02120 PF17954 Quercetinase C-terminal cupin domain ND446_02120 PF02678 Pirin ND446_02125 PF03466 LysR substrate binding domain ND446_02125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_02130 PF07681 DoxX ND446_02135 PF13997 YqjK-like protein ND446_02140 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ND446_02145 PF05957 Bacterial protein of unknown function (DUF883) ND446_02155 PF13721 SecD export protein N-terminal TM region ND446_02160 PF09335 SNARE associated Golgi protein ND446_02170 PF07729 FCD domain ND446_02170 PF00392 Bacterial regulatory proteins, gntR family ND446_02175 PF07690 Major Facilitator Superfamily ND446_02180 PF02614 Glucuronate isomerase ND446_02185 PF01232 Mannitol dehydrogenase Rossmann domain ND446_02185 PF08125 Mannitol dehydrogenase C-terminal domain ND446_02190 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ND446_02190 PF08666 SAF domain ND446_02195 PF10688 Bacterial inner membrane protein ND446_02200 PF00375 Sodium:dicarboxylate symporter family ND446_02205 PF03741 Integral membrane protein TerC family ND446_02210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND446_02215 PF01863 Protein of unknown function DUF45 ND446_02225 PF05175 Methyltransferase small domain ND446_02230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND446_02230 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND446_02235 PF08479 POTRA domain, ShlB-type ND446_02235 PF17287 POTRA domain ND446_02235 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND446_02240 PF13018 Extended Signal Peptide of Type V secretion system ND446_02240 PF05860 haemagglutination activity domain ND446_02240 PF04829 Pre-toxin domain with VENN motif ND446_02240 PF13332 Hemagglutinin repeat ND446_02245 PF18624 CDI immunity protein ND446_02255 PF04829 Pre-toxin domain with VENN motif ND446_02255 PF13332 Hemagglutinin repeat ND446_02285 PF00106 short chain dehydrogenase ND446_02310 PF02661 Fic/DOC family ND446_02340 PF13148 Protein of unknown function (DUF3987) ND446_02365 PF01926 50S ribosome-binding GTPase ND446_02370 PF06067 Domain of unknown function (DUF932) ND446_02375 PF08220 DeoR-like helix-turn-helix domain ND446_02375 PF13280 WYL domain ND446_02390 PF06006 Bacterial protein of unknown function (DUF905) ND446_02395 PF03230 Antirestriction protein ND446_02400 PF04002 RadC-like JAB domain ND446_02405 PF06174 Protein of unknown function (DUF987) ND446_02410 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A ND446_02415 PF06755 CbtA_toxin of type IV toxin-antitoxin system ND446_02430 PF02899 Phage integrase, N-terminal SAM-like domain ND446_02430 PF00589 Phage integrase family ND446_02450 PF06892 Phage regulatory protein CII (CP76) ND446_02480 PF05840 Bacteriophage replication gene A protein (GPA) ND446_02585 PF07484 Phage Tail Collar Domain ND446_02590 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND446_02620 PF00140 Sigma-70 factor, region 1.2 ND446_02620 PF04545 Sigma-70, region 4 ND446_02620 PF03979 Sigma-70 factor, region 1.1 ND446_02620 PF04542 Sigma-70 region 2 ND446_02620 PF04546 Sigma-70, non-essential region ND446_02620 PF04539 Sigma-70 region 3 ND446_02625 PF10410 DnaB-helicase binding domain of primase ND446_02625 PF08278 DNA primase DnaG DnaB-binding ND446_02625 PF08275 DNA primase catalytic core, N-terminal domain ND446_02625 PF01807 CHC2 zinc finger ND446_02630 PF01165 Ribosomal protein S21 ND446_02635 PF00814 Glycoprotease family ND446_02640 PF02660 Glycerol-3-phosphate acyltransferase ND446_02645 PF02152 Dihydroneopterin aldolase ND446_02650 PF02673 Bacitracin resistance protein BacA ND446_02655 PF01966 HD domain ND446_02655 PF12627 Probable RNA and SrmB- binding site of polymerase A ND446_02655 PF01743 Poly A polymerase head domain ND446_02660 PF08239 Bacterial SH3 domain ND446_02665 PF01928 CYTH domain ND446_02670 PF08335 GlnD PII-uridylyltransferase ND446_02670 PF03710 Glutamate-ammonia ligase adenylyltransferase ND446_02675 PF01467 Cytidylyltransferase-like ND446_02675 PF00294 pfkB family carbohydrate kinase ND446_02685 PF04380 Membrane fusogenic activity ND446_02690 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ND446_02695 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ND446_02700 PF03738 Glutathionylspermidine synthase preATP-grasp ND446_02705 PF06693 Protein of unknown function (DUF1190) ND446_02710 PF02321 Outer membrane efflux protein ND446_02715 PF00293 NUDIX domain ND446_02720 PF06853 Protein of unknown function (DUF1249) ND446_02725 PF00149 Calcineurin-like phosphoesterase ND446_02730 PF05728 Uncharacterised protein family (UPF0227) ND446_02735 PF00204 DNA gyrase B ND446_02735 PF00986 DNA gyrase B subunit, carboxyl terminus ND446_02735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_02735 PF01751 Toprim domain ND446_02740 PF03466 LysR substrate binding domain ND446_02740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_02745 PF02525 Flavodoxin-like fold ND446_02750 PF03989 DNA gyrase C-terminal domain, beta-propeller ND446_02750 PF00521 DNA gyrase/topoisomerase IV, subunit A ND446_02755 PF01553 Acyltransferase ND446_02760 PF07731 Multicopper oxidase ND446_02760 PF07732 Multicopper oxidase ND446_02765 PF11842 Domain of unknown function (DUF3362) ND446_02765 PF04055 Radical SAM superfamily ND446_02765 PF08497 Radical SAM N-terminal ND446_02770 PF00248 Aldo/keto reductase family ND446_02775 PF00465 Iron-containing alcohol dehydrogenase ND446_02780 PF12833 Helix-turn-helix domain ND446_02780 PF06719 AraC-type transcriptional regulator N-terminus ND446_02785 PF09335 SNARE associated Golgi protein ND446_02790 PF01053 Cys/Met metabolism PLP-dependent enzyme ND446_02795 PF01618 MotA/TolQ/ExbB proton channel family ND446_02800 PF02472 Biopolymer transport protein ExbD/TolR ND446_02835 PF00437 Type II/IV secretion system protein ND446_02845 PF04972 BON domain ND446_02845 PF00263 Bacterial type II and III secretion system protein ND446_02845 PF13629 Pilus formation protein N terminal region ND446_02870 PF08501 Shikimate dehydrogenase substrate binding domain ND446_02875 PF07715 TonB-dependent Receptor Plug Domain ND446_02875 PF00593 TonB dependent receptor ND446_02880 PF11806 Domain of unknown function (DUF3327) ND446_02880 PF00756 Putative esterase ND446_02885 PF03621 MbtH-like protein ND446_02890 PF13193 AMP-binding enzyme C-terminal domain ND446_02890 PF00668 Condensation domain ND446_02890 PF00550 Phosphopantetheine attachment site ND446_02890 PF00975 Thioesterase domain ND446_02890 PF00501 AMP-binding enzyme ND446_02900 PF00005 ABC transporter ND446_02905 PF01032 FecCD transport family ND446_02910 PF01032 FecCD transport family ND446_02915 PF05977 Transmembrane secretion effector ND446_02920 PF01497 Periplasmic binding protein ND446_02925 PF00425 chorismate binding enzyme ND446_02930 PF00501 AMP-binding enzyme ND446_02930 PF13193 AMP-binding enzyme C-terminal domain ND446_02935 PF00857 Isochorismatase family ND446_02935 PF00550 Phosphopantetheine attachment site ND446_02945 PF00501 AMP-binding enzyme ND446_02945 PF13193 AMP-binding enzyme C-terminal domain ND446_02945 PF00668 Condensation domain ND446_02945 PF00550 Phosphopantetheine attachment site ND446_02945 PF00975 Thioesterase domain ND446_02950 PF00291 Pyridoxal-phosphate dependent enzyme ND446_02955 PF01490 Transmembrane amino acid transporter protein ND446_02960 PF00871 Acetokinase family ND446_02965 PF01228 Glycine radical ND446_02965 PF02901 Pyruvate formate lyase-like ND446_02970 PF00294 pfkB family carbohydrate kinase ND446_02975 PF00571 CBS domain ND446_02975 PF01380 SIS domain ND446_02980 PF00455 DeoR C terminal sensor domain ND446_02980 PF08220 DeoR-like helix-turn-helix domain ND446_02985 PF06923 Glucitol operon activator protein (GutM) ND446_02990 PF00106 short chain dehydrogenase ND446_02995 PF03829 PTS system glucitol/sorbitol-specific IIA component ND446_03000 PF07663 Sorbitol phosphotransferase enzyme II C-terminus ND446_03000 PF03612 Sorbitol phosphotransferase enzyme II N-terminus ND446_03005 PF03608 PTS system enzyme II sorbitol-specific factor ND446_03015 PF16456 YmgD protein ND446_03020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_03020 PF03466 LysR substrate binding domain ND446_03105 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ND446_03105 PF01464 Transglycosylase SLT domain ND446_03110 PF04362 Bacterial Fe(2+) trafficking ND446_03115 PF10576 Iron-sulfur binding domain of endonuclease III ND446_03115 PF00633 Helix-hairpin-helix motif ND446_03115 PF00730 HhH-GPD superfamily base excision DNA repair protein ND446_03115 PF14815 NUDIX domain ND446_03120 PF02390 Putative methyltransferase ND446_03125 PF04320 Protein with unknown function (DUF469) ND446_03130 PF04960 Glutaminase ND446_03135 PF11101 Protein of unknown function (DUF2884) ND446_03140 PF06969 HemN C-terminal domain ND446_03140 PF04055 Radical SAM superfamily ND446_03145 PF01725 Ham1 family ND446_03150 PF02594 Uncharacterised ACR, YggU family COG1872 ND446_03155 PF02325 YGGT family ND446_03160 PF03807 NADP oxidoreductase coenzyme F420-dependent ND446_03160 PF14748 Pyrroline-5-carboxylate reductase dimerisation ND446_03165 PF01168 Alanine racemase, N-terminal domain ND446_03170 PF00437 Type II/IV secretion system protein ND446_03175 PF04371 Porphyromonas-type peptidyl-arginine deiminase ND446_03180 PF00795 Carbon-nitrogen hydrolase ND446_03185 PF03652 Holliday junction resolvase ND446_03190 PF02622 Uncharacterized ACR, COG1678 ND446_03195 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ND446_03195 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ND446_03200 PF04452 RNA methyltransferase ND446_03205 PF04231 Endonuclease I ND446_03210 PF10263 SprT-like family ND446_03210 PF17283 SprT-like zinc ribbon domain ND446_03220 PF04143 Sulphur transport ND446_03230 PF02773 S-adenosylmethionine synthetase, C-terminal domain ND446_03230 PF00438 S-adenosylmethionine synthetase, N-terminal domain ND446_03230 PF02772 S-adenosylmethionine synthetase, central domain ND446_03235 PF17810 Arginine decarboxylase helical bundle domain ND446_03235 PF17944 Arginine decarboxylase C-terminal helical extension ND446_03235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND446_03245 PF02779 Transketolase, pyrimidine binding domain ND446_03245 PF02780 Transketolase, C-terminal domain ND446_03245 PF00456 Transketolase, thiamine diphosphate binding domain ND446_03250 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND446_03250 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND446_03255 PF00162 Phosphoglycerate kinase ND446_03260 PF01116 Fructose-bisphosphate aldolase class-II ND446_03265 PF05552 Conserved TM helix ND446_03265 PF00924 Mechanosensitive ion channel ND446_03270 PF01810 LysE type translocator ND446_03275 PF04402 Protein of unknown function (DUF541) ND446_03280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_03280 PF03466 LysR substrate binding domain ND446_03285 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ND446_03290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND446_03290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND446_03290 PF01842 ACT domain ND446_03295 PF01812 5-formyltetrahydrofolate cyclo-ligase family ND446_03305 PF05164 Cell division protein ZapA ND446_03310 PF03695 Uncharacterised protein family (UPF0149) ND446_03315 PF00557 Metallopeptidase family M24 ND446_03315 PF05195 Aminopeptidase P, N-terminal domain ND446_03320 PF01494 FAD binding domain ND446_03325 PF01494 FAD binding domain ND446_03330 PF01571 Aminomethyltransferase folate-binding domain ND446_03330 PF08669 Glycine cleavage T-protein C-terminal barrel domain ND446_03335 PF01597 Glycine cleavage H-protein ND446_03340 PF02347 Glycine cleavage system P-protein ND446_03350 PF03006 Haemolysin-III related ND446_03355 PF01571 Aminomethyltransferase folate-binding domain ND446_03360 PF03937 Flavinator of succinate dehydrogenase ND446_03365 PF07254 Membrane-bound toxin component of toxin-antitoxin system ND446_03370 PF00258 Flavodoxin ND446_03375 PF00589 Phage integrase family ND446_03375 PF02899 Phage integrase, N-terminal SAM-like domain ND446_03380 PF13098 Thioredoxin-like domain ND446_03380 PF10411 Disulfide bond isomerase protein N-terminus ND446_03385 PF02272 DHHA1 domain ND446_03385 PF01368 DHH family ND446_03385 PF17768 RecJ OB domain ND446_03395 PF00152 tRNA synthetases class II (D, K and N) ND446_03395 PF01336 OB-fold nucleic acid binding domain ND446_03405 PF02405 Permease MlaE ND446_03410 PF00005 ABC transporter ND446_03440 PF00437 Type II/IV secretion system protein ND446_03445 PF00482 Type II secretion system (T2SS), protein F ND446_03450 PF07963 Prokaryotic N-terminal methylation motif ND446_03450 PF08334 Type II secretion system (T2SS), protein G ND446_03460 PF02501 Type II secretion system (T2SS), protein I ND446_03460 PF07963 Prokaryotic N-terminal methylation motif ND446_03465 PF07963 Prokaryotic N-terminal methylation motif ND446_03465 PF11612 Type II secretion system (T2SS), protein J ND446_03505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_03505 PF03466 LysR substrate binding domain ND446_03510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_03510 PF03466 LysR substrate binding domain ND446_03515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND446_03515 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ND446_03520 PF00356 Bacterial regulatory proteins, lacI family ND446_03525 PF01553 Acyltransferase ND446_03525 PF00501 AMP-binding enzyme ND446_03525 PF13193 AMP-binding enzyme C-terminal domain ND446_03530 PF07690 Major Facilitator Superfamily ND446_03535 PF00248 Aldo/keto reductase family ND446_03540 PF03741 Integral membrane protein TerC family ND446_03545 PF02976 DNA mismatch repair enzyme MutH ND446_03550 PF00293 NUDIX domain ND446_03555 PF05524 PEP-utilising enzyme, N-terminal ND446_03555 PF00391 PEP-utilising enzyme, mobile domain ND446_03555 PF01590 GAF domain ND446_03555 PF02896 PEP-utilising enzyme, TIM barrel domain ND446_03560 PF01790 Prolipoprotein diacylglyceryl transferase ND446_03565 PF00303 Thymidylate synthase ND446_03585 PF07963 Prokaryotic N-terminal methylation motif ND446_03585 PF12528 Type II secretion prepilin peptidase dependent protein C ND446_03590 PF17946 RecC C-terminal domain ND446_03595 PF16187 Middle or third domain of peptidase_M16 ND446_03595 PF00675 Insulinase (Peptidase family M16) ND446_03595 PF05193 Peptidase M16 inactive domain ND446_03600 PF12705 PD-(D/E)XK nuclease superfamily ND446_03600 PF00580 UvrD/REP helicase N-terminal domain ND446_03600 PF13361 UvrD-like helicase C-terminal domain ND446_03605 PF13538 UvrD-like helicase C-terminal domain ND446_03610 PF00696 Amino acid kinase family ND446_03610 PF00583 Acetyltransferase (GNAT) family ND446_03615 PF01520 N-acetylmuramoyl-L-alanine amidase ND446_03615 PF11741 AMIN domain ND446_03635 PF06725 3D domain ND446_03635 PF03562 MltA specific insert domain ND446_03640 PF00899 ThiF family ND446_03645 PF02657 Fe-S metabolism associated domain ND446_03650 PF00266 Aminotransferase class-V ND446_03655 PF06004 Bacterial protein of unknown function (DUF903) ND446_03660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_03660 PF03466 LysR substrate binding domain ND446_03665 PF04241 Protein of unknown function (DUF423) ND446_03670 PF01728 FtsJ-like methyltransferase ND446_03670 PF18125 RlmM ferredoxin-like domain ND446_03675 PF01367 5'-3' exonuclease, C-terminal SAM fold ND446_03675 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND446_03680 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ND446_03680 PF03641 Possible lysine decarboxylase ND446_03680 PF11892 Domain of unknown function (DUF3412) ND446_03685 PF14489 QueF-like protein ND446_03685 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ND446_03690 PF07348 Syd protein (SUKH-2) ND446_03695 PF04287 tRNA pseudouridine synthase C ND446_03700 PF00849 RNA pseudouridylate synthase ND446_03705 PF00258 Flavodoxin ND446_03710 PF11944 Protein of unknown function (DUF3461) ND446_03715 PF00132 Bacterial transferase hexapeptide (six repeats) ND446_03715 PF14602 Hexapeptide repeat of succinyl-transferase ND446_03715 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ND446_03720 PF01966 HD domain ND446_03720 PF01842 ACT domain ND446_03720 PF01909 Nucleotidyltransferase domain ND446_03720 PF08335 GlnD PII-uridylyltransferase ND446_03725 PF00557 Metallopeptidase family M24 ND446_03730 PF00318 Ribosomal protein S2 ND446_03735 PF00889 Elongation factor TS ND446_03740 PF00696 Amino acid kinase family ND446_03745 PF01765 Ribosome recycling factor ND446_03750 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ND446_03750 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ND446_03750 PF13288 DXP reductoisomerase C-terminal domain ND446_03755 PF01255 Putative undecaprenyl diphosphate synthase ND446_03765 PF17820 PDZ domain ND446_03765 PF02163 Peptidase family M50 ND446_03770 PF01103 Surface antigen ND446_03770 PF07244 Surface antigen variable number repeat ND446_03775 PF03938 Outer membrane protein (OmpH-like) ND446_03780 PF00132 Bacterial transferase hexapeptide (six repeats) ND446_03780 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ND446_03785 PF07977 FabA-like domain ND446_03790 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ND446_03790 PF00132 Bacterial transferase hexapeptide (six repeats) ND446_03795 PF02684 Lipid-A-disaccharide synthetase ND446_03800 PF01351 Ribonuclease HII ND446_03805 PF07733 Bacterial DNA polymerase III alpha NTPase domain ND446_03805 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ND446_03805 PF14579 Helix-hairpin-helix motif ND446_03805 PF02811 PHP domain ND446_03805 PF01336 OB-fold nucleic acid binding domain ND446_03810 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ND446_03825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND446_03830 PF01171 PP-loop family ND446_03830 PF11734 TilS substrate C-terminal domain ND446_03830 PF09179 TilS substrate binding domain ND446_03835 PF00034 Cytochrome c ND446_03840 PF07073 Modulator of Rho-dependent transcription termination (ROF) ND446_03845 PF06786 Uncharacterised protein family (UPF0253) ND446_03850 PF07152 YaeQ protein ND446_03855 PF00472 RF-1 domain ND446_03860 PF04170 NlpE N-terminal domain ND446_03860 PF17185 NlpE C-terminal OB domain ND446_03865 PF04073 Aminoacyl-tRNA editing domain ND446_03865 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND446_03865 PF03129 Anticodon binding domain ND446_03870 PF18389 TrmO C-terminal domain ND446_03870 PF01980 tRNA-methyltransferase O ND446_03875 PF16358 RcsF lipoprotein ND446_03880 PF03180 NLPA lipoprotein ND446_03885 PF00528 Binding-protein-dependent transport system inner membrane component ND446_03890 PF09383 NIL domain ND446_03890 PF00005 ABC transporter ND446_03920 PF10043 Predicted periplasmic lipoprotein (DUF2279) ND446_03925 PF13091 PLD-like domain ND446_03930 PF13380 CoA binding domain ND446_03930 PF00583 Acetyltransferase (GNAT) family ND446_03930 PF13607 Succinyl-CoA ligase like flavodoxin domain ND446_03935 PF03942 DTW domain ND446_03940 PF00085 Thioredoxin ND446_03945 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND446_03945 PF00588 SpoU rRNA Methylase family ND446_03950 PF07690 Major Facilitator Superfamily ND446_03955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND446_03955 PF00529 HlyD membrane-fusion protein of T1SS ND446_03965 PF01047 MarR family ND446_03970 PF07690 Major Facilitator Superfamily ND446_03980 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND446_03985 PF00528 Binding-protein-dependent transport system inner membrane component ND446_03990 PF00005 ABC transporter ND446_03990 PF00571 CBS domain ND446_04000 PF00268 Ribonucleotide reductase, small chain ND446_04005 PF08343 Ribonucleotide reductase N-terminal ND446_04005 PF02867 Ribonucleotide reductase, barrel domain ND446_04005 PF00317 Ribonucleotide reductase, all-alpha domain ND446_04010 PF07972 NrdI Flavodoxin like ND446_04025 PF09400 Protein of unknown function (DUF2002) ND446_04030 PF06711 Protein of unknown function (DUF1198) ND446_04040 PF00313 'Cold-shock' DNA-binding domain ND446_04045 PF06039 Malate:quinone oxidoreductase (Mqo) ND446_04050 PF01070 FMN-dependent dehydrogenase ND446_04055 PF02652 L-lactate permease ND446_04060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_04060 PF03466 LysR substrate binding domain ND446_04065 PF00561 alpha/beta hydrolase fold ND446_04075 PF00005 ABC transporter ND446_04080 PF02653 Branched-chain amino acid transport system / permease component ND446_04090 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND446_04090 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND446_04095 PF01380 SIS domain ND446_04095 PF00571 CBS domain ND446_04180 PF04917 Bacterial shufflon protein, N-terminal constant region ND446_04190 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ND446_04220 PF00589 Phage integrase family ND446_04220 PF13356 Arm DNA-binding domain ND446_04230 PF01668 SmpB protein ND446_04235 PF03364 Polyketide cyclase / dehydrase and lipid transport ND446_04240 PF03658 RnfH family Ubiquitin ND446_04245 PF04355 SmpA / OmlA family ND446_04250 PF02463 RecF/RecN/SMC N terminal domain ND446_04255 PF01513 ATP-NAD kinase ND446_04260 PF01025 GrpE ND446_04265 PF03167 Uracil DNA glycosylase superfamily ND446_04270 PF01228 Glycine radical ND446_04280 PF12796 Ankyrin repeats (3 copies) ND446_04285 PF00270 DEAD/DEAH box helicase ND446_04285 PF00271 Helicase conserved C-terminal domain ND446_04290 PF05175 Methyltransferase small domain ND446_04295 PF00890 FAD binding domain ND446_04295 PF02910 Fumarate reductase flavoprotein C-term ND446_04300 PF04542 Sigma-70 region 2 ND446_04300 PF08281 Sigma-70, region 4 ND446_04305 PF03872 Anti sigma-E protein RseA, N-terminal domain ND446_04305 PF03873 Anti sigma-E protein RseA, C-terminal domain ND446_04310 PF03888 MucB/RseB N-terminal domain ND446_04310 PF17188 MucB/RseB C-terminal domain ND446_04320 PF00679 Elongation factor G C-terminus ND446_04320 PF03144 Elongation factor Tu domain 2 ND446_04320 PF06421 GTP-binding protein LepA C-terminus ND446_04320 PF00009 Elongation factor Tu GTP binding domain ND446_04325 PF10502 Signal peptidase, peptidase S26 ND446_04330 PF00035 Double-stranded RNA binding motif ND446_04330 PF14622 Ribonuclease-III-like ND446_04335 PF01926 50S ribosome-binding GTPase ND446_04335 PF07650 KH domain ND446_04340 PF02565 Recombination protein O C terminal ND446_04340 PF11967 Recombination protein O N terminal ND446_04345 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ND446_04350 PF01648 4'-phosphopantetheinyl transferase superfamily ND446_04355 PF12838 4Fe-4S dicluster domain ND446_04360 PF01418 Helix-turn-helix domain, rpiR family ND446_04360 PF01380 SIS domain ND446_04365 PF01380 SIS domain ND446_04370 PF00367 phosphotransferase system, EIIB ND446_04370 PF02378 Phosphotransferase system, EIIC ND446_04380 PF14437 MafB19-like deaminase ND446_04385 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND446_04385 PF01464 Transglycosylase SLT domain ND446_04390 PF02769 AIR synthase related protein, C-terminal domain ND446_04390 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ND446_04390 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ND446_04400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_04400 PF00512 His Kinase A (phospho-acceptor) domain ND446_04405 PF13942 YfhG lipoprotein ND446_04410 PF00072 Response regulator receiver domain ND446_04410 PF00158 Sigma-54 interaction domain ND446_04415 PF02540 NAD synthase ND446_04415 PF00795 Carbon-nitrogen hydrolase ND446_04420 PF00543 Nitrogen regulatory protein P-II ND446_04425 PF10797 Protein of unknown function ND446_04430 PF10941 Protein of unknown function DUF2620 ND446_04435 PF02126 Phosphotriesterase family ND446_04440 PF01168 Alanine racemase, N-terminal domain ND446_04450 PF14502 Helix-turn-helix domain ND446_04450 PF14503 YhfZ C-terminal domain ND446_04455 PF00970 Oxidoreductase FAD-binding domain ND446_04455 PF00175 Oxidoreductase NAD-binding domain ND446_04455 PF00042 Globin ND446_04460 PF00464 Serine hydroxymethyltransferase ND446_04465 PF12832 MFS_1 like family ND446_04470 PF00874 PRD domain ND446_04475 PF06226 Protein of unknown function (DUF1007) ND446_04480 PF03824 High-affinity nickel-transport protein ND446_04485 PF00459 Inositol monophosphatase family ND446_04490 PF00588 SpoU rRNA Methylase family ND446_04495 PF02082 Transcriptional regulator ND446_04500 PF00266 Aminotransferase class-V ND446_04505 PF01592 NifU-like N terminal domain ND446_04510 PF01521 Iron-sulphur cluster biosynthesis ND446_04515 PF07743 HSCB C-terminal oligomerisation domain ND446_04515 PF00226 DnaJ domain ND446_04520 PF00012 Hsp70 protein ND446_04525 PF00111 2Fe-2S iron-sulfur cluster binding domain ND446_04530 PF04384 Iron-sulphur cluster assembly ND446_04535 PF12404 Peptidase ND446_04535 PF00883 Cytosol aminopeptidase family, catalytic domain ND446_04540 PF07179 SseB protein N-terminal domain ND446_04540 PF14581 SseB protein C-terminal domain ND446_04545 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ND446_04545 PF00207 Alpha-2-macroglobulin family ND446_04545 PF07703 Alpha-2-macroglobulin bait region domain ND446_04545 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain ND446_04545 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ND446_04545 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ND446_04545 PF07678 A-macroglobulin TED domain ND446_04545 PF01835 MG2 domain ND446_04545 PF17962 Bacterial macroglobulin domain 6 ND446_04550 PF06832 Penicillin-Binding Protein C-terminus Family ND446_04550 PF00912 Transglycosylase ND446_04550 PF00905 Penicillin binding protein transpeptidase domain ND446_04560 PF00334 Nucleoside diphosphate kinase ND446_04565 PF04055 Radical SAM superfamily ND446_04575 PF13464 Domain of unknown function (DUF4115) ND446_04580 PF04551 GcpE protein ND446_04585 PF03129 Anticodon binding domain ND446_04585 PF13393 Histidyl-tRNA synthetase ND446_04590 PF09976 Tetratricopeptide repeat-like domain ND446_04595 PF13360 PQQ-like domain ND446_04600 PF01926 50S ribosome-binding GTPase ND446_04600 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ND446_04605 PF07191 zinc-ribbons ND446_04610 PF13742 OB-fold nucleic acid binding domain ND446_04610 PF02601 Exonuclease VII, large subunit ND446_04615 PF00571 CBS domain ND446_04615 PF00478 IMP dehydrogenase / GMP reductase domain ND446_04620 PF02540 NAD synthase ND446_04620 PF00958 GMP synthase C terminal domain ND446_04620 PF00117 Glutamine amidotransferase class-I ND446_04630 PF08543 Phosphomethylpyrimidine kinase ND446_04645 PF00781 Diacylglycerol kinase catalytic domain ND446_04650 PF01136 Peptidase family U32 ND446_04650 PF16325 Peptidase family U32 C-terminal domain ND446_04655 PF07411 Domain of unknown function (DUF1508) ND446_04660 PF00072 Response regulator receiver domain ND446_04660 PF00486 Transcriptional regulatory protein, C terminal ND446_04665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_04665 PF00512 His Kinase A (phospho-acceptor) domain ND446_04665 PF00672 HAMP domain ND446_04670 PF07690 Major Facilitator Superfamily ND446_04675 PF00873 AcrB/AcrD/AcrF family ND446_04680 PF00873 AcrB/AcrD/AcrF family ND446_04685 PF13533 Biotin-lipoyl like ND446_04700 PF13953 PapC C-terminal domain ND446_04700 PF13954 PapC N-terminal domain ND446_04700 PF00577 Outer membrane usher protein ND446_04705 PF02753 Pili assembly chaperone PapD, C-terminal domain ND446_04705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND446_04715 PF00012 Hsp70 protein ND446_04720 PF00571 CBS domain ND446_04720 PF01769 Divalent cation transporter ND446_04720 PF03448 MgtE intracellular N domain ND446_04730 PF02541 Ppx/GppA phosphatase family ND446_04735 PF02503 Polyphosphate kinase middle domain ND446_04735 PF13090 Polyphosphate kinase C-terminal domain 2 ND446_04735 PF17941 Polyphosphate kinase C-terminal domain 1 ND446_04735 PF13089 Polyphosphate kinase N-terminal domain ND446_04740 PF00528 Binding-protein-dependent transport system inner membrane component ND446_04745 PF00528 Binding-protein-dependent transport system inner membrane component ND446_04750 PF00005 ABC transporter ND446_04755 PF13302 Acetyltransferase (GNAT) domain ND446_04760 PF00551 Formyl transferase ND446_04765 PF02769 AIR synthase related protein, C-terminal domain ND446_04765 PF00586 AIR synthase related protein, N-terminal domain ND446_04775 PF00860 Permease family ND446_04780 PF00308 Bacterial dnaA protein ND446_04785 PF03960 ArsC family ND446_04790 PF01435 Peptidase family M48 ND446_04790 PF07720 Tetratricopeptide repeat ND446_04795 PF01594 AI-2E family transporter ND446_04800 PF00578 AhpC/TSA family ND446_04805 PF01842 ACT domain ND446_04810 PF00701 Dihydrodipicolinate synthetase family ND446_04815 PF06804 NlpB/DapX lipoprotein ND446_04820 PF01259 SAICAR synthetase ND446_04825 PF04284 Protein of unknown function (DUF441) ND446_04830 PF05127 Helicase ND446_04830 PF08351 Domain of unknown function (DUF1726) ND446_04830 PF17176 tRNA-binding domain ND446_04830 PF13718 GNAT acetyltransferase 2 ND446_04835 PF02230 Phospholipase/Carboxylesterase ND446_04840 PF13980 Uncharacterised protein family (UPF0370) ND446_04845 PF02557 D-alanyl-D-alanine carboxypeptidase ND446_04850 PF07687 Peptidase dimerisation domain ND446_04850 PF01546 Peptidase family M20/M25/M40 ND446_04855 PF03960 ArsC family ND446_04885 PF02796 Helix-turn-helix domain of resolvase ND446_04885 PF00239 Resolvase, N terminal domain ND446_04925 PF01817 Chorismate mutase type II ND446_04935 PF00873 AcrB/AcrD/AcrF family ND446_04945 PF00072 Response regulator receiver domain ND446_04945 PF00196 Bacterial regulatory proteins, luxR family ND446_04950 PF00037 4Fe-4S binding domain ND446_04950 PF12800 4Fe-4S binding domain ND446_04950 PF13187 4Fe-4S dicluster domain ND446_04955 PF03927 NapD protein ND446_04960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND446_04960 PF01568 Molydopterin dinucleotide binding domain ND446_04960 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND446_04960 PF00384 Molybdopterin oxidoreductase ND446_04965 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ND446_04970 PF03264 NapC/NirT cytochrome c family, N-terminal region ND446_04975 PF00293 NUDIX domain ND446_04980 PF00390 Malic enzyme, N-terminal domain ND446_04980 PF03949 Malic enzyme, NAD binding domain ND446_04980 PF01515 Phosphate acetyl/butaryl transferase ND446_04985 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ND446_04990 PF01218 Coproporphyrinogen III oxidase ND446_04995 PF00583 Acetyltransferase (GNAT) family ND446_05000 PF04076 Bacterial OB fold (BOF) protein ND446_05005 PF06572 Protein of unknown function (DUF1131) ND446_05010 PF04261 Dyp-type peroxidase family ND446_05015 PF00701 Dihydrodipicolinate synthetase family ND446_05020 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ND446_05025 PF00480 ROK family ND446_05030 PF04074 YhcH/YjgK/YiaL ND446_05035 PF01380 SIS domain ND446_05035 PF01418 Helix-turn-helix domain, rpiR family ND446_05040 PF07690 Major Facilitator Superfamily ND446_05050 PF00528 Binding-protein-dependent transport system inner membrane component ND446_05055 PF00528 Binding-protein-dependent transport system inner membrane component ND446_05060 PF00005 ABC transporter ND446_05065 PF00291 Pyridoxal-phosphate dependent enzyme ND446_05070 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND446_05075 PF05524 PEP-utilising enzyme, N-terminal ND446_05075 PF00391 PEP-utilising enzyme, mobile domain ND446_05075 PF02896 PEP-utilising enzyme, TIM barrel domain ND446_05080 PF00381 PTS HPr component phosphorylation site ND446_05085 PF00291 Pyridoxal-phosphate dependent enzyme ND446_05095 PF04354 ZipA, C-terminal FtsZ-binding domain ND446_05100 PF00533 BRCA1 C Terminus (BRCT) domain ND446_05100 PF01653 NAD-dependent DNA ligase adenylation domain ND446_05100 PF03120 NAD-dependent DNA ligase OB-fold domain ND446_05100 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ND446_05100 PF12826 Helix-hairpin-helix motif ND446_05105 PF12843 Putative quorum-sensing-regulated virulence factor ND446_05130 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND446_05170 PF07670 Nucleoside recognition ND446_05170 PF01773 Na+ dependent nucleoside transporter N-terminus ND446_05170 PF07662 Na+ dependent nucleoside transporter C-terminus ND446_05175 PF01566 Natural resistance-associated macrophage protein ND446_05185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_05185 PF03466 LysR substrate binding domain ND446_05195 PF02685 Glucokinase ND446_05200 PF07690 Major Facilitator Superfamily ND446_05205 PF04397 LytTr DNA-binding domain ND446_05205 PF00072 Response regulator receiver domain ND446_05210 PF07694 5TMR of 5TMR-LYT ND446_05210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_05210 PF06580 Histidine kinase ND446_05215 PF07350 Protein of unknown function (DUF1479) ND446_05220 PF00155 Aminotransferase class I and II ND446_05225 PF01292 Prokaryotic cytochrome b561 ND446_05240 PF13406 Transglycosylase SLT domain ND446_05245 PF03831 PhnA domain ND446_05245 PF08274 PhnA Zinc-Ribbon ND446_05260 PF00005 ABC transporter ND446_05265 PF03379 CcmB protein ND446_05270 PF01578 Cytochrome C assembly protein ND446_05275 PF04995 Heme exporter protein D (CcmD) ND446_05280 PF03100 CcmE ND446_05285 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ND446_05285 PF01578 Cytochrome C assembly protein ND446_05290 PF08534 Redoxin ND446_05295 PF03918 Cytochrome C biogenesis protein ND446_05300 PF03918 Cytochrome C biogenesis protein ND446_05305 PF04333 MlaA lipoprotein ND446_05310 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ND446_05315 PF04175 Protein of unknown function (DUF406) ND446_05320 PF02803 Thiolase, C-terminal domain ND446_05320 PF00108 Thiolase, N-terminal domain ND446_05325 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND446_05325 PF00378 Enoyl-CoA hydratase/isomerase ND446_05325 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND446_05330 PF00300 Histidine phosphatase superfamily (branch 1) ND446_05335 PF01713 Smr domain ND446_05340 PF05175 Methyltransferase small domain ND446_05345 PF01264 Chorismate synthase ND446_05350 PF03411 Penicillin-insensitive murein endopeptidase ND446_05355 PF01925 Sulfite exporter TauE/SafE ND446_05360 PF04315 Elongation factor P hydroxylase ND446_05365 PF08891 YfcL protein ND446_05370 PF01266 FAD dependent oxidoreductase ND446_05370 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ND446_05375 PF00109 Beta-ketoacyl synthase, N-terminal domain ND446_05375 PF02801 Beta-ketoacyl synthase, C-terminal domain ND446_05405 PF00578 AhpC/TSA family ND446_05410 PF00155 Aminotransferase class I and II ND446_05430 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND446_05430 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND446_05430 PF11890 Domain of unknown function (DUF3410) ND446_05435 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND446_05435 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND446_05440 PF01416 tRNA pseudouridine synthase ND446_05445 PF09335 SNARE associated Golgi protein ND446_05450 PF01039 Carboxyl transferase domain ND446_05450 PF17848 Acetyl-coA carboxylase zinc finger domain ND446_05455 PF02875 Mur ligase family, glutamate ligase domain ND446_05455 PF08245 Mur ligase middle domain ND446_05460 PF05036 Sporulation related domain ND446_05465 PF02674 Colicin V production protein ND446_05470 PF00156 Phosphoribosyl transferase domain ND446_05475 PF02441 Flavoprotein ND446_05485 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND446_05490 PF00528 Binding-protein-dependent transport system inner membrane component ND446_05495 PF00528 Binding-protein-dependent transport system inner membrane component ND446_05500 PF00005 ABC transporter ND446_05505 PF01370 NAD dependent epimerase/dehydratase family ND446_05505 PF08338 Domain of unknown function (DUF1731) ND446_05510 PF02798 Glutathione S-transferase, N-terminal domain ND446_05510 PF00043 Glutathione S-transferase, C-terminal domain ND446_05520 PF12850 Calcineurin-like phosphoesterase superfamily domain ND446_05525 PF00293 NUDIX domain ND446_05530 PF03611 PTS system sugar-specific permease component ND446_05540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND446_05545 PF00356 Bacterial regulatory proteins, lacI family ND446_05545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND446_05550 PF07085 DRTGG domain ND446_05550 PF01515 Phosphate acetyl/butaryl transferase ND446_05555 PF00871 Acetokinase family ND446_05560 PF04217 Protein of unknown function, DUF412 ND446_05565 PF03887 YfbU domain ND446_05575 PF02080 TrkA-C domain ND446_05575 PF03600 Citrate transporter ND446_05585 PF00155 Aminotransferase class I and II ND446_05590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_05590 PF03466 LysR substrate binding domain ND446_05595 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ND446_05600 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND446_05605 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND446_05605 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND446_05615 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ND446_05615 PF10531 SLBB domain ND446_05615 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND446_05620 PF00384 Molybdopterin oxidoreductase ND446_05620 PF01568 Molydopterin dinucleotide binding domain ND446_05620 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ND446_05620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND446_05625 PF00146 NADH dehydrogenase ND446_05630 PF12838 4Fe-4S dicluster domain ND446_05635 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ND446_05640 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ND446_05645 PF00361 Proton-conducting membrane transporter ND446_05645 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ND446_05650 PF00361 Proton-conducting membrane transporter ND446_05655 PF00361 Proton-conducting membrane transporter ND446_05660 PF06496 Protein of unknown function (DUF1097) ND446_05665 PF05957 Bacterial protein of unknown function (DUF883) ND446_05670 PF00425 chorismate binding enzyme ND446_05675 PF16582 Middle domain of thiamine pyrophosphate ND446_05675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND446_05675 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND446_05680 PF12697 Alpha/beta hydrolase family ND446_05685 PF00378 Enoyl-CoA hydratase/isomerase ND446_05690 PF13378 Enolase C-terminal domain-like ND446_05695 PF00501 AMP-binding enzyme ND446_05695 PF13193 AMP-binding enzyme C-terminal domain ND446_05700 PF00199 Catalase ND446_05700 PF06628 Catalase-related immune-responsive ND446_05705 PF07437 YfaZ precursor ND446_05710 PF03222 Tryptophan/tyrosine permease family ND446_05720 PF00535 Glycosyl transferase family 2 ND446_05725 PF04138 GtrA-like protein ND446_05730 PF00994 Probable molybdopterin binding domain ND446_05735 PF03974 Ecotin ND446_05745 PF00111 2Fe-2S iron-sulfur cluster binding domain ND446_05750 PF00268 Ribonucleotide reductase, small chain ND446_05755 PF02867 Ribonucleotide reductase, barrel domain ND446_05755 PF00317 Ribonucleotide reductase, all-alpha domain ND446_05755 PF03477 ATP cone domain ND446_05765 PF03989 DNA gyrase C-terminal domain, beta-propeller ND446_05765 PF00521 DNA gyrase/topoisomerase IV, subunit A ND446_05770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_05770 PF00512 His Kinase A (phospho-acceptor) domain ND446_05770 PF09456 RcsC Alpha-Beta-Loop (ABL) ND446_05770 PF00072 Response regulator receiver domain ND446_05775 PF00196 Bacterial regulatory proteins, luxR family ND446_05775 PF00072 Response regulator receiver domain ND446_05780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_05780 PF01627 Hpt domain ND446_05780 PF16359 RcsD-ABL domain ND446_05785 PF07690 Major Facilitator Superfamily ND446_05790 PF00267 Gram-negative porin ND446_05810 PF00144 Beta-lactamase ND446_05815 PF12706 Beta-lactamase superfamily domain ND446_05820 PF06183 DinI-like family ND446_05840 PF11893 Domain of unknown function (DUF3413) ND446_05840 PF00884 Sulfatase ND446_05845 PF07208 Protein of unknown function (DUF1414) ND446_05850 PF04245 37-kD nucleoid-associated bacterial protein ND446_05855 PF01386 Ribosomal L25p family ND446_05860 PF00271 Helicase conserved C-terminal domain ND446_05860 PF04851 Type III restriction enzyme, res subunit ND446_05865 PF00849 RNA pseudouridylate synthase ND446_05865 PF01479 S4 domain ND446_05870 PF07690 Major Facilitator Superfamily ND446_05875 PF13989 YejG-like protein ND446_05880 PF00005 ABC transporter ND446_05880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND446_05885 PF00528 Binding-protein-dependent transport system inner membrane component ND446_05885 PF12911 N-terminal TM domain of oligopeptide transport permease C ND446_05890 PF00528 Binding-protein-dependent transport system inner membrane component ND446_05895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND446_05900 PF00563 EAL domain ND446_05900 PF12792 CSS motif domain associated with EAL ND446_05905 PF00877 NlpC/P60 family ND446_05910 PF01569 PAP2 superfamily ND446_05915 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND446_05915 PF07683 Cobalamin synthesis protein cobW C-terminal domain ND446_05925 PF01232 Mannitol dehydrogenase Rossmann domain ND446_05925 PF08125 Mannitol dehydrogenase C-terminal domain ND446_05930 PF03786 D-mannonate dehydratase (UxuA) ND446_05935 PF01132 Elongation factor P (EF-P) OB domain ND446_05935 PF08207 Elongation factor P (EF-P) KOW-like domain ND446_05935 PF09285 Elongation factor P, C-terminal ND446_05940 PF03222 Tryptophan/tyrosine permease family ND446_05945 PF03692 Putative zinc- or iron-chelating domain ND446_05950 PF18364 Molybdopterin oxidoreductase N-terminal domain ND446_05950 PF00384 Molybdopterin oxidoreductase ND446_05950 PF01568 Molydopterin dinucleotide binding domain ND446_05955 PF03264 NapC/NirT cytochrome c family, N-terminal region ND446_05960 PF00293 NUDIX domain ND446_05965 PF00381 PTS HPr component phosphorylation site ND446_05965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND446_05970 PF00294 pfkB family carbohydrate kinase ND446_05975 PF02378 Phosphotransferase system, EIIC ND446_05975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND446_05980 PF01261 Xylose isomerase-like TIM barrel ND446_05985 PF03601 Conserved hypothetical protein 698 ND446_05995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_05995 PF03466 LysR substrate binding domain ND446_06000 PF00324 Amino acid permease ND446_06010 PF01032 FecCD transport family ND446_06015 PF00005 ABC transporter ND446_06020 PF07715 TonB-dependent Receptor Plug Domain ND446_06020 PF00593 TonB dependent receptor ND446_06025 PF13520 Amino acid permease ND446_06030 PF00929 Exonuclease ND446_06030 PF08411 Exonuclease C-terminal ND446_06040 PF04632 Fusaric acid resistance protein family ND446_06045 PF04363 Protein of unknown function (DUF496) ND446_06060 PF00005 ABC transporter ND446_06060 PF08402 TOBE domain ND446_06065 PF00528 Binding-protein-dependent transport system inner membrane component ND446_06075 PF07690 Major Facilitator Superfamily ND446_06080 PF07730 Histidine kinase ND446_06080 PF05231 MASE1 ND446_06080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_06085 PF00196 Bacterial regulatory proteins, luxR family ND446_06085 PF00072 Response regulator receiver domain ND446_06090 PF12431 Transcriptional regulator ND446_06090 PF00072 Response regulator receiver domain ND446_06095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_06095 PF00989 PAS fold ND446_06095 PF17203 Single cache domain 3 ND446_06095 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND446_06100 PF08218 Citrate lyase ligase C-terminal domain ND446_06105 PF06857 Malonate decarboxylase delta subunit (MdcD) ND446_06110 PF03328 HpcH/HpaI aldolase/citrate lyase family ND446_06115 PF04223 Citrate lyase, alpha subunit (CitF) ND446_06120 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase ND446_06125 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ND446_06130 PF00939 Sodium:sulfate symporter transmembrane region ND446_06135 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ND446_06135 PF01648 4'-phosphopantetheinyl transferase superfamily ND446_06155 PF06167 Glucose-regulated metallo-peptidase M90 ND446_06165 PF14001 YdfZ protein ND446_06175 PF10777 Inner membrane protein YlaC ND446_06180 PF00698 Acyl transferase domain ND446_06180 PF08240 Alcohol dehydrogenase GroES-like domain ND446_06180 PF00107 Zinc-binding dehydrogenase ND446_06180 PF16197 Ketoacyl-synthetase C-terminal extension ND446_06180 PF00109 Beta-ketoacyl synthase, N-terminal domain ND446_06180 PF02801 Beta-ketoacyl synthase, C-terminal domain ND446_06180 PF08659 KR domain ND446_06180 PF00550 Phosphopantetheine attachment site ND446_06180 PF14765 Polyketide synthase dehydratase ND446_06200 PF00356 Bacterial regulatory proteins, lacI family ND446_06210 PF00313 'Cold-shock' DNA-binding domain ND446_06215 PF10781 Dextransucrase DSRB ND446_06220 PF00672 HAMP domain ND446_06220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND446_06220 PF02203 Tar ligand binding domain homologue ND446_06225 PF02308 MgtC family ND446_06235 PF00582 Universal stress protein family ND446_06240 PF05247 Flagellar transcriptional activator (FlhD) ND446_06245 PF05280 Flagellar transcriptional activator (FlhC) ND446_06250 PF01618 MotA/TolQ/ExbB proton channel family ND446_06255 PF13677 Membrane MotB of proton-channel complex MotA/MotB ND446_06255 PF00691 OmpA family ND446_06260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_06260 PF02895 Signal transducing histidine kinase, homodimeric domain ND446_06260 PF01584 CheW-like domain ND446_06260 PF09078 CheY binding ND446_06260 PF01627 Hpt domain ND446_06265 PF01584 CheW-like domain ND446_06270 PF00672 HAMP domain ND446_06270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND446_06270 PF02203 Tar ligand binding domain homologue ND446_06275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND446_06275 PF00672 HAMP domain ND446_06275 PF02203 Tar ligand binding domain homologue ND446_06280 PF03705 CheR methyltransferase, all-alpha domain ND446_06280 PF01739 CheR methyltransferase, SAM binding domain ND446_06285 PF01339 CheB methylesterase ND446_06285 PF00072 Response regulator receiver domain ND446_06290 PF00072 Response regulator receiver domain ND446_06295 PF04344 Chemotaxis phosphatase, CheZ ND446_06300 PF01483 Proprotein convertase P-domain ND446_06300 PF00082 Subtilase family ND446_06305 PF01312 FlhB HrpN YscU SpaS Family ND446_06310 PF00771 FHIPEP family ND446_06315 PF06366 Flagellar protein FlhE ND446_06325 PF05130 FlgN protein ND446_06330 PF04316 Anti-sigma-28 factor, FlgM ND446_06335 PF13144 Chaperone for flagella basal body P-ring formation ND446_06335 PF17656 FlgA N-terminal domain ND446_06340 PF00460 Flagella basal body rod protein ND446_06345 PF00460 Flagella basal body rod protein ND446_06345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND446_06350 PF03963 Flagellar hook capping protein - N-terminal region ND446_06350 PF13860 FlgD Ig-like domain ND446_06350 PF13861 FlgD Tudor-like domain ND446_06355 PF07559 Flagellar basal body protein FlaE ND446_06355 PF00460 Flagella basal body rod protein ND446_06355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND446_06360 PF00460 Flagella basal body rod protein ND446_06360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND446_06365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND446_06365 PF00460 Flagella basal body rod protein ND446_06370 PF02107 Flagellar L-ring protein ND446_06375 PF02119 Flagellar P-ring protein ND446_06380 PF10135 Rod binding protein ND446_06380 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ND446_06385 PF00460 Flagella basal body rod protein ND446_06385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND446_06390 PF00669 Bacterial flagellin N-terminal helical region ND446_06395 PF01311 Bacterial export proteins, family 1 ND446_06400 PF01313 Bacterial export proteins, family 3 ND446_06405 PF00813 FliP family ND446_06410 PF04347 Flagellar biosynthesis protein, FliO ND446_06415 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND446_06415 PF16973 Flagellar motor switch protein FliN N-terminal ND446_06420 PF02154 Flagellar motor switch protein FliM ND446_06420 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND446_06425 PF03748 Flagellar basal body-associated protein FliL ND446_06430 PF02120 Flagellar hook-length control protein FliK ND446_06435 PF02050 Flagellar FliJ protein ND446_06440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND446_06440 PF18269 T3SS EscN ATPase C-terminal domain ND446_06445 PF02108 Flagellar assembly protein FliH ND446_06450 PF01706 FliG C-terminal domain ND446_06450 PF14841 FliG middle domain ND446_06450 PF14842 FliG N-terminal domain ND446_06455 PF01514 Secretory protein of YscJ/FliF family ND446_06455 PF08345 Flagellar M-ring protein C-terminal ND446_06460 PF02049 Flagellar hook-basal body complex protein FliE ND446_06465 PF01223 DNA/RNA non-specific endonuclease ND446_06470 PF07885 Ion channel ND446_06470 PF02254 TrkA-N domain ND446_06475 PF01966 HD domain ND446_06480 PF12833 Helix-turn-helix domain ND446_06485 PF05400 Flagellar protein FliT ND446_06490 PF02561 Flagellar protein FliS ND446_06495 PF02465 Flagellar hook-associated protein 2 N-terminus ND446_06495 PF07195 Flagellar hook-associated protein 2 C-terminus ND446_06495 PF07196 Flagellin hook IN motif ND446_06500 PF00700 Bacterial flagellin C-terminal helical region ND446_06500 PF00669 Bacterial flagellin N-terminal helical region ND446_06500 PF08884 Flagellin D3 domain ND446_06505 PF00700 Bacterial flagellin C-terminal helical region ND446_06505 PF08884 Flagellin D3 domain ND446_06505 PF00669 Bacterial flagellin N-terminal helical region ND446_06510 PF00700 Bacterial flagellin C-terminal helical region ND446_06510 PF08884 Flagellin D3 domain ND446_06510 PF00669 Bacterial flagellin N-terminal helical region ND446_06515 PF04542 Sigma-70 region 2 ND446_06515 PF04539 Sigma-70 region 3 ND446_06515 PF04545 Sigma-70, region 4 ND446_06520 PF02899 Phage integrase, N-terminal SAM-like domain ND446_06525 PF00291 Pyridoxal-phosphate dependent enzyme ND446_06530 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND446_06535 PF00528 Binding-protein-dependent transport system inner membrane component ND446_06540 PF00005 ABC transporter ND446_06545 PF00171 Aldehyde dehydrogenase family ND446_06545 PF01619 Proline dehydrogenase ND446_06545 PF14850 DNA-binding domain of Proline dehydrogenase ND446_06545 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ND446_06550 PF00474 Sodium:solute symporter family ND446_06555 PF00486 Transcriptional regulatory protein, C terminal ND446_06555 PF18500 CadC C-terminal domain 1 ND446_06560 PF13520 Amino acid permease ND446_06565 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND446_06565 PF01276 Orn/Lys/Arg decarboxylase, major domain ND446_06565 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND446_06570 PF00324 Amino acid permease ND446_06590 PF10769 Protein of unknown function (DUF2594) ND446_06595 PF00196 Bacterial regulatory proteins, luxR family ND446_06595 PF00072 Response regulator receiver domain ND446_06600 PF08459 UvrC Helix-hairpin-helix N-terminal ND446_06600 PF02151 UvrB/uvrC motif ND446_06600 PF01541 GIY-YIG catalytic domain ND446_06605 PF01066 CDP-alcohol phosphatidyltransferase ND446_06625 PF00665 Integrase core domain ND446_06625 PF13333 Integrase core domain ND446_06625 PF13276 HTH-like domain ND446_06630 PF02203 Tar ligand binding domain homologue ND446_06630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND446_06630 PF00672 HAMP domain ND446_06640 PF00005 ABC transporter ND446_06645 PF00528 Binding-protein-dependent transport system inner membrane component ND446_06660 PF00034 Cytochrome c ND446_06660 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ND446_06670 PF13673 Acetyltransferase (GNAT) domain ND446_06700 PF04960 Glutaminase ND446_06705 PF13520 Amino acid permease ND446_06710 PF00282 Pyridoxal-dependent decarboxylase conserved domain ND446_06715 PF00849 RNA pseudouridylate synthase ND446_06730 PF13520 Amino acid permease ND446_06740 PF03553 Na+/H+ antiporter family ND446_06745 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ND446_06755 PF00849 RNA pseudouridylate synthase ND446_06755 PF01479 S4 domain ND446_06760 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND446_06765 PF02378 Phosphotransferase system, EIIC ND446_06770 PF00232 Glycosyl hydrolase family 1 ND446_06775 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ND446_06780 PF07883 Cupin domain ND446_06780 PF12833 Helix-turn-helix domain ND446_06785 PF04794 YdjC-like protein ND446_06795 PF00313 'Cold-shock' DNA-binding domain ND446_06800 PF00313 'Cold-shock' DNA-binding domain ND446_06805 PF08241 Methyltransferase domain ND446_06820 PF07478 D-ala D-ala ligase C-terminus ND446_06820 PF01820 D-ala D-ala ligase N-terminus ND446_06825 PF06411 HdeA/HdeB family ND446_06835 PF03372 Endonuclease/Exonuclease/phosphatase family ND446_06840 PF00563 EAL domain ND446_06840 PF01590 GAF domain ND446_06840 PF00990 Diguanylate cyclase, GGDEF domain ND446_06840 PF00360 Phytochrome region ND446_06850 PF00664 ABC transporter transmembrane region ND446_06850 PF00005 ABC transporter ND446_06855 PF13520 Amino acid permease ND446_06870 PF12833 Helix-turn-helix domain ND446_06875 PF10964 Protein of unknown function (DUF2766) ND446_06880 PF13996 YobH-like protein ND446_06885 PF13998 MgrB protein ND446_06890 PF13974 YebO-like protein ND446_06905 PF00324 Amino acid permease ND446_06910 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ND446_06915 PF10736 Protein of unknown function (DUF2627) ND446_06920 PF00313 'Cold-shock' DNA-binding domain ND446_06925 PF02578 Multi-copper polyphenol oxidoreductase laccase ND446_06930 PF03717 Penicillin-binding Protein dimerisation domain ND446_06930 PF00905 Penicillin binding protein transpeptidase domain ND446_06935 PF13847 Methyltransferase domain ND446_06955 PF07690 Major Facilitator Superfamily ND446_06960 PF00501 AMP-binding enzyme ND446_06960 PF13193 AMP-binding enzyme C-terminal domain ND446_06960 PF00668 Condensation domain ND446_06960 PF00550 Phosphopantetheine attachment site ND446_06965 PF05199 GMC oxidoreductase ND446_06965 PF00732 GMC oxidoreductase ND446_06975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND446_06975 PF02770 Acyl-CoA dehydrogenase, middle domain ND446_06975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND446_06990 PF02441 Flavoprotein ND446_06995 PF02659 Putative manganese efflux pump ND446_07000 PF06173 Protein of unknown function (DUF986) ND446_07005 PF03613 PTS system mannose/fructose/sorbose family IID component ND446_07010 PF03609 PTS system sorbose-specific iic component ND446_07015 PF03610 PTS system fructose IIA component ND446_07015 PF03830 PTS system sorbose subfamily IIB component ND446_07020 PF03471 Transporter associated domain ND446_07020 PF03741 Integral membrane protein TerC family ND446_07025 PF03313 Serine dehydratase alpha chain ND446_07025 PF03315 Serine dehydratase beta chain ND446_07030 PF00293 NUDIX domain ND446_07035 PF00425 chorismate binding enzyme ND446_07035 PF04715 Anthranilate synthase component I, N terminal region ND446_07040 PF03701 Uncharacterised protein family (UPF0181) ND446_07045 PF02222 ATP-grasp domain ND446_07050 PF03880 DbpA RNA binding domain ND446_07050 PF00270 DEAD/DEAH box helicase ND446_07050 PF00271 Helicase conserved C-terminal domain ND446_07055 PF07130 YebG protein ND446_07060 PF04266 ASCH domain ND446_07065 PF13995 YebF-like protein ND446_07070 PF00326 Prolyl oligopeptidase family ND446_07070 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ND446_07075 PF00929 Exonuclease ND446_07080 PF00561 alpha/beta hydrolase fold ND446_07085 PF06440 DNA polymerase III, theta subunit ND446_07090 PF00210 Ferritin-like domain ND446_07095 PF04234 CopC domain ND446_07100 PF05425 Copper resistance protein D ND446_07105 PF10709 Protein of unknown function (DUF2511) ND446_07115 PF00144 Beta-lactamase ND446_07135 PF10753 Toxin GhoT_OrtT ND446_07140 PF03783 Curli production assembly/transport component CsgG ND446_07150 PF05643 Putative bacterial lipoprotein (DUF799) ND446_07175 PF07351 Protein of unknown function (DUF1480) ND446_07180 PF00563 EAL domain ND446_07180 PF01590 GAF domain ND446_07180 PF00990 Diguanylate cyclase, GGDEF domain ND446_07180 PF00360 Phytochrome region ND446_07185 PF02470 MlaD protein ND446_07190 PF04403 Paraquat-inducible protein A ND446_07195 PF13185 GAF domain ND446_07200 PF04352 ProQ/FINO family ND446_07200 PF17516 ProQ C-terminal domain ND446_07205 PF03572 Peptidase family S41 ND446_07205 PF17804 Tail specific protease N-terminal domain ND446_07205 PF11818 C-terminal domain of tail specific protease (DUF3340) ND446_07205 PF00595 PDZ domain ND446_07210 PF01435 Peptidase family M48 ND446_07220 PF07690 Major Facilitator Superfamily ND446_07225 PF01614 Bacterial transcriptional regulator ND446_07225 PF09339 IclR helix-turn-helix domain ND446_07230 PF01510 N-acetylmuramoyl-L-alanine amidase ND446_07235 PF00375 Sodium:dicarboxylate symporter family ND446_07240 PF04307 LexA-binding, inner membrane-associated putative hydrolase ND446_07245 PF13419 Haloacid dehalogenase-like hydrolase ND446_07250 PF14002 YniB-like protein ND446_07255 PF03881 Fructosamine kinase ND446_07260 PF00950 ABC 3 transport family ND446_07265 PF00950 ABC 3 transport family ND446_07270 PF00005 ABC transporter ND446_07275 PF01297 Zinc-uptake complex component A periplasmic ND446_07280 PF01464 Transglycosylase SLT domain ND446_07285 PF01914 MarC family integral membrane protein ND446_07315 PF03129 Anticodon binding domain ND446_07315 PF02824 TGS domain ND446_07315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND446_07315 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND446_07320 PF00707 Translation initiation factor IF-3, C-terminal domain ND446_07320 PF05198 Translation initiation factor IF-3, N-terminal domain ND446_07325 PF01632 Ribosomal protein L35 ND446_07330 PF00453 Ribosomal protein L20 ND446_07335 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ND446_07335 PF01409 tRNA synthetases class II core domain (F) ND446_07340 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ND446_07340 PF01588 Putative tRNA binding domain ND446_07340 PF03483 B3/4 domain ND446_07340 PF03484 tRNA synthetase B5 domain ND446_07340 PF03147 Ferredoxin-fold anticodon binding domain ND446_07345 PF00216 Bacterial DNA-binding protein ND446_07355 PF04606 Ogr/Delta-like zinc finger ND446_07405 PF09553 Eco47II restriction endonuclease ND446_07410 PF00145 C-5 cytosine-specific DNA methylase ND446_07410 PF13411 MerR HTH family regulatory protein ND446_07415 PF01032 FecCD transport family ND446_07420 PF00005 ABC transporter ND446_07425 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND446_07430 PF00535 Glycosyl transferase family 2 ND446_07435 PF01370 NAD dependent epimerase/dehydratase family ND446_07435 PF02911 Formyl transferase, C-terminal domain ND446_07435 PF00551 Formyl transferase ND446_07440 PF01522 Polysaccharide deacetylase ND446_07445 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ND446_07450 PF00892 EamA-like transporter family ND446_07460 PF00877 NlpC/P60 family ND446_07465 PF03099 Biotin/lipoate A/B protein ligase family ND446_07465 PF10437 Bacterial lipoate protein ligase C-terminus ND446_07470 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ND446_07475 PF00005 ABC transporter ND446_07480 PF01032 FecCD transport family ND446_07485 PF01497 Periplasmic binding protein ND446_07490 PF05171 Haemin-degrading HemS.ChuX domain ND446_07495 PF07715 TonB-dependent Receptor Plug Domain ND446_07495 PF00593 TonB dependent receptor ND446_07500 PF10636 Hemin uptake protein hemP ND446_07505 PF00793 DAHP synthetase I family ND446_07510 PF03618 Kinase/pyrophosphorylase ND446_07515 PF00391 PEP-utilising enzyme, mobile domain ND446_07515 PF02896 PEP-utilising enzyme, TIM barrel domain ND446_07515 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ND446_07525 PF01594 AI-2E family transporter ND446_07530 PF02913 FAD linked oxidases, C-terminal domain ND446_07530 PF13183 4Fe-4S dicluster domain ND446_07530 PF01565 FAD binding domain ND446_07535 PF03061 Thioesterase superfamily ND446_07540 PF01521 Iron-sulphur cluster biosynthesis ND446_07545 PF01458 Uncharacterized protein family (UPF0051) ND446_07550 PF00005 ABC transporter ND446_07555 PF01458 Uncharacterized protein family (UPF0051) ND446_07560 PF00266 Aminotransferase class-V ND446_07565 PF02657 Fe-S metabolism associated domain ND446_07570 PF17969 L,D-transpeptidase C-terminal domain ND446_07570 PF01476 LysM domain ND446_07570 PF03734 L,D-transpeptidase catalytic domain ND446_07575 PF04728 Lipoprotein leucine-zipper ND446_07580 PF00224 Pyruvate kinase, barrel domain ND446_07580 PF02887 Pyruvate kinase, alpha/beta domain ND446_07600 PF01554 MatE ND446_07605 PF00677 Lumazine binding domain ND446_07615 PF07690 Major Facilitator Superfamily ND446_07620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_07620 PF03466 LysR substrate binding domain ND446_07625 PF00356 Bacterial regulatory proteins, lacI family ND446_07635 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND446_07635 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND446_07640 PF00877 NlpC/P60 family ND446_07645 PF00462 Glutaredoxin ND446_07650 PF00929 Exonuclease ND446_07655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND446_07660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND446_07665 PF16925 Tetracyclin repressor-like, C-terminal domain ND446_07665 PF00440 Bacterial regulatory proteins, tetR family ND446_07670 PF08019 Phosphoethanolamine transferase EptA/EptB ND446_07670 PF00884 Sulfatase ND446_07675 PF06945 Protein of unknown function (DUF1289) ND446_07680 PF00248 Aldo/keto reductase family ND446_07690 PF01047 MarR family ND446_07695 PF05433 Glycine zipper 2TM domain ND446_07700 PF03702 Anhydro-N-acetylmuramic acid kinase ND446_07705 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ND446_07705 PF01243 Pyridoxamine 5'-phosphate oxidase ND446_07710 PF01479 S4 domain ND446_07710 PF00579 tRNA synthetases class I (W and Y) ND446_07715 PF08543 Phosphomethylpyrimidine kinase ND446_07720 PF00043 Glutathione S-transferase, C-terminal domain ND446_07720 PF02798 Glutathione S-transferase, N-terminal domain ND446_07725 PF11656 YjbD family (DUF3811) ND446_07735 PF04893 Yip1 domain ND446_07745 PF01556 DnaJ C terminal domain ND446_07745 PF00226 DnaJ domain ND446_07755 PF00854 POT family ND446_07765 PF00005 ABC transporter ND446_07770 PF00005 ABC transporter ND446_07770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND446_07775 PF00528 Binding-protein-dependent transport system inner membrane component ND446_07775 PF12911 N-terminal TM domain of oligopeptide transport permease C ND446_07780 PF00528 Binding-protein-dependent transport system inner membrane component ND446_07785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND446_07790 PF02917 Pertussis toxin, subunit 1 ND446_07800 PF02954 Bacterial regulatory protein, Fis family ND446_07800 PF00158 Sigma-54 interaction domain ND446_07805 PF04012 PspA/IM30 family ND446_07810 PF06667 Phage shock protein B ND446_07815 PF04024 PspC domain ND446_07825 PF04317 YcjX-like family, DUF463 ND446_07830 PF05128 Domain of unknown function (DUF697) ND446_07835 PF08808 RES domain ND446_07840 PF09722 Protein of unknown function (DUF2384) ND446_07845 PF18024 Helix-turn-helix domain ND446_07845 PF00158 Sigma-54 interaction domain ND446_07850 PF08534 Redoxin ND446_07855 PF13378 Enolase C-terminal domain-like ND446_07855 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ND446_07860 PF00246 Zinc carboxypeptidase ND446_07865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND446_07870 PF01544 CorA-like Mg2+ transporter protein ND446_07875 PF01171 PP-loop family ND446_07880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND446_07880 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ND446_07880 PF10371 Domain of unknown function ND446_07880 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ND446_07880 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ND446_07885 PF00893 Small Multidrug Resistance protein ND446_07890 PF02308 MgtC family ND446_07895 PF03891 Domain of unknown function (DUF333) ND446_07900 PF03724 META domain ND446_07905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND446_07905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND446_07910 PF11739 Dicarboxylate transport ND446_07920 PF13617 YnbE-like lipoprotein ND446_07925 PF07027 Protein of unknown function (DUF1318) ND446_07930 PF02525 Flavodoxin-like fold ND446_07935 PF11898 Domain of unknown function (DUF3418) ND446_07935 PF00270 DEAD/DEAH box helicase ND446_07935 PF04408 Helicase associated domain (HA2) ND446_07935 PF00271 Helicase conserved C-terminal domain ND446_07935 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ND446_07940 PF00089 Trypsin ND446_07950 PF01161 Phosphatidylethanolamine-binding protein ND446_07955 PF12833 Helix-turn-helix domain ND446_07960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND446_07965 PF00080 Copper/zinc superoxide dismutase (SODC) ND446_07970 PF00672 HAMP domain ND446_07970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_07970 PF00512 His Kinase A (phospho-acceptor) domain ND446_07975 PF00072 Response regulator receiver domain ND446_07975 PF00486 Transcriptional regulatory protein, C terminal ND446_07985 PF13520 Amino acid permease ND446_07990 PF07338 Protein of unknown function (DUF1471) ND446_07995 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ND446_07995 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ND446_07995 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ND446_08000 PF02233 NAD(P) transhydrogenase beta subunit ND446_08005 PF01261 Xylose isomerase-like TIM barrel ND446_08010 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND446_08015 PF00596 Class II Aldolase and Adducin N-terminal domain ND446_08020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND446_08025 PF03611 PTS system sugar-specific permease component ND446_08030 PF00455 DeoR C terminal sensor domain ND446_08030 PF08220 DeoR-like helix-turn-helix domain ND446_08040 PF00582 Universal stress protein family ND446_08045 PF00027 Cyclic nucleotide-binding domain ND446_08045 PF13545 Crp-like helix-turn-helix domain ND446_08050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND446_08050 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ND446_08055 PF06445 GyrI-like small molecule binding domain ND446_08065 PF13419 Haloacid dehalogenase-like hydrolase ND446_08105 PF01048 Phosphorylase superfamily ND446_08105 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ND446_08120 PF01510 N-acetylmuramoyl-L-alanine amidase ND446_08125 PF00106 short chain dehydrogenase ND446_08130 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ND446_08135 PF06932 Protein of unknown function (DUF1283) ND446_08140 PF06649 Protein of unknown function (DUF1161) ND446_08145 PF00654 Voltage gated chloride channel ND446_08155 PF00480 ROK family ND446_08170 PF05472 DNA replication terminus site-binding protein (Ter protein) ND446_08175 PF00206 Lyase ND446_08175 PF10415 Fumarase C C-terminus ND446_08180 PF01238 Phosphomannose isomerase type I ND446_08185 PF06097 Bacterial protein of unknown function (DUF945) ND446_08205 PF00962 Adenosine/AMP deaminase ND446_08210 PF13593 SBF-like CPA transporter family (DUF4137) ND446_08215 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND446_08215 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ND446_08220 PF09313 Domain of unknown function (DUF1971) ND446_08220 PF03848 Tellurite resistance protein TehB ND446_08225 PF01268 Formate--tetrahydrofolate ligase ND446_08230 PF10754 Protein of unknown function (DUF2569) ND446_08235 PF02508 Rnf-Nqr subunit, membrane protein ND446_08240 PF04060 Putative Fe-S cluster ND446_08245 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND446_08245 PF13237 4Fe-4S dicluster domain ND446_08245 PF13375 RnfC Barrel sandwich hybrid domain ND446_08245 PF10531 SLBB domain ND446_08250 PF12833 Helix-turn-helix domain ND446_08250 PF06445 GyrI-like small molecule binding domain ND446_08255 PF03116 NQR2, RnfD, RnfE family ND446_08260 PF04205 FMN-binding domain ND446_08265 PF02508 Rnf-Nqr subunit, membrane protein ND446_08270 PF10576 Iron-sulfur binding domain of endonuclease III ND446_08270 PF00633 Helix-hairpin-helix motif ND446_08270 PF00730 HhH-GPD superfamily base excision DNA repair protein ND446_08275 PF08206 Ribonuclease B OB domain ND446_08275 PF00773 RNB domain ND446_08275 PF00575 S1 RNA binding domain ND446_08280 PF13426 PAS domain ND446_08280 PF05231 MASE1 ND446_08280 PF00990 Diguanylate cyclase, GGDEF domain ND446_08280 PF00563 EAL domain ND446_08280 PF08448 PAS fold ND446_08280 PF08447 PAS fold ND446_08285 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND446_08290 PF05433 Glycine zipper 2TM domain ND446_08295 PF01253 Translation initiation factor SUI1 ND446_08300 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND446_08305 PF07338 Protein of unknown function (DUF1471) ND446_08315 PF18073 Rubredoxin metal binding domain ND446_08320 PF06305 Lipopolysaccharide assembly protein A domain ND446_08325 PF01569 PAP2 superfamily ND446_08330 PF00925 GTP cyclohydrolase II ND446_08335 PF00330 Aconitase family (aconitate hydratase) ND446_08335 PF00694 Aconitase C-terminal domain ND446_08355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_08355 PF03466 LysR substrate binding domain ND446_08360 PF08272 Topoisomerase I zinc-ribbon-like ND446_08360 PF01396 Topoisomerase DNA binding C4 zinc finger ND446_08360 PF01131 DNA topoisomerase ND446_08360 PF01751 Toprim domain ND446_08365 PF10692 Protein of unknown function (DUF2498) ND446_08370 PF08496 Peptidase family S49 N-terminal ND446_08370 PF01343 Peptidase family S49 ND446_08375 PF00106 short chain dehydrogenase ND446_08380 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ND446_08385 PF01479 S4 domain ND446_08385 PF00849 RNA pseudouridylate synthase ND446_08390 PF01300 Telomere recombination ND446_08395 PF02811 PHP domain ND446_08400 PF00425 chorismate binding enzyme ND446_08400 PF04715 Anthranilate synthase component I, N terminal region ND446_08405 PF00117 Glutamine amidotransferase class-I ND446_08410 PF02885 Glycosyl transferase family, helical bundle domain ND446_08410 PF00591 Glycosyl transferase family, a/b domain ND446_08415 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ND446_08415 PF00218 Indole-3-glycerol phosphate synthase ND446_08420 PF00291 Pyridoxal-phosphate dependent enzyme ND446_08425 PF00290 Tryptophan synthase alpha chain ND446_08435 PF03922 OmpW family ND446_08440 PF03692 Putative zinc- or iron-chelating domain ND446_08450 PF01740 STAS domain ND446_08450 PF00916 Sulfate permease family ND446_08455 PF04279 Intracellular septation protein A ND446_08460 PF03061 Thioesterase superfamily ND446_08465 PF03544 Gram-negative bacterial TonB protein C-terminal ND446_08485 PF13954 PapC N-terminal domain ND446_08485 PF13953 PapC C-terminal domain ND446_08485 PF00577 Outer membrane usher protein ND446_08490 PF02753 Pili assembly chaperone PapD, C-terminal domain ND446_08490 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND446_08500 PF00486 Transcriptional regulatory protein, C terminal ND446_08515 PF03795 YCII-related domain ND446_08535 PF13091 PLD-like domain ND446_08535 PF13396 Phospholipase_D-nuclease N-terminal ND446_08540 PF04269 Protein of unknown function, DUF440 ND446_08545 PF00005 ABC transporter ND446_08545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND446_08550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND446_08550 PF00005 ABC transporter ND446_08555 PF12911 N-terminal TM domain of oligopeptide transport permease C ND446_08555 PF00528 Binding-protein-dependent transport system inner membrane component ND446_08560 PF00528 Binding-protein-dependent transport system inner membrane component ND446_08565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND446_08575 PF01914 MarC family integral membrane protein ND446_08585 PF00465 Iron-containing alcohol dehydrogenase ND446_08585 PF00171 Aldehyde dehydrogenase family ND446_08590 PF00265 Thymidine kinase ND446_08595 PF00816 H-NS histone family ND446_08600 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND446_08600 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND446_08600 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND446_08605 PF00072 Response regulator receiver domain ND446_08610 PF01734 Patatin-like phospholipase ND446_08615 PF02810 SEC-C motif ND446_08620 PF00551 Formyl transferase ND446_08620 PF01842 ACT domain ND446_08645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_08645 PF03466 LysR substrate binding domain ND446_08655 PF03372 Endonuclease/Exonuclease/phosphatase family ND446_08660 PF00293 NUDIX domain ND446_08665 PF07383 Protein of unknown function (DUF1496) ND446_08670 PF01131 DNA topoisomerase ND446_08670 PF01751 Toprim domain ND446_08675 PF02769 AIR synthase related protein, C-terminal domain ND446_08675 PF00586 AIR synthase related protein, N-terminal domain ND446_08680 PF00881 Nitroreductase family ND446_08685 PF01343 Peptidase family S49 ND446_08690 PF17763 Glutaminase/Asparaginase C-terminal domain ND446_08690 PF00710 Asparaginase, N-terminal ND446_08695 PF00857 Isochorismatase family ND446_08700 PF07023 Protein of unknown function (DUF1315) ND446_08705 PF01641 SelR domain ND446_08710 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND446_08710 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND446_08715 PF01263 Aldose 1-epimerase ND446_08720 PF00884 Sulfatase ND446_08725 PF06629 MltA-interacting protein MipA ND446_08735 PF06798 PrkA serine protein kinase C-terminal domain ND446_08735 PF08298 PrkA AAA domain ND446_08740 PF04285 Protein of unknown function (DUF444) ND446_08745 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND446_08745 PF00205 Thiamine pyrophosphate enzyme, central domain ND446_08745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND446_08750 PF03306 Alpha-acetolactate decarboxylase ND446_08755 PF03466 LysR substrate binding domain ND446_08755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_08770 PF07690 Major Facilitator Superfamily ND446_08775 PF01168 Alanine racemase, N-terminal domain ND446_08775 PF00842 Alanine racemase, C-terminal domain ND446_08780 PF01266 FAD dependent oxidoreductase ND446_08785 PF04293 SpoVR like protein ND446_08790 PF00392 Bacterial regulatory proteins, gntR family ND446_08790 PF07840 FadR C-terminal domain ND446_08795 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ND446_08800 PF02600 Disulfide bond formation protein DsbB ND446_08815 PF03692 Putative zinc- or iron-chelating domain ND446_08820 PF01557 Fumarylacetoacetate (FAA) hydrolase family ND446_08825 PF05166 YcgL domain ND446_08830 PF03775 Septum formation inhibitor MinC, C-terminal domain ND446_08830 PF05209 Septum formation inhibitor MinC, N-terminal domain ND446_08835 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ND446_08840 PF03776 Septum formation topological specificity factor MinE ND446_08845 PF01612 3'-5' exonuclease ND446_08845 PF00570 HRDC domain ND446_08850 PF00501 AMP-binding enzyme ND446_08850 PF13193 AMP-binding enzyme C-terminal domain ND446_08855 PF03843 Outer membrane lipoprotein Slp family ND446_08860 PF00814 Glycoprotease family ND446_08865 PF13307 Helicase C-terminal domain ND446_08865 PF04851 Type III restriction enzyme, res subunit ND446_08870 PF01042 Endoribonuclease L-PSP ND446_08875 PF00893 Small Multidrug Resistance protein ND446_08880 PF00893 Small Multidrug Resistance protein ND446_08885 PF01081 KDPG and KHG aldolase ND446_08890 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ND446_08890 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ND446_08895 PF01380 SIS domain ND446_08895 PF01418 Helix-turn-helix domain, rpiR family ND446_08900 PF02887 Pyruvate kinase, alpha/beta domain ND446_08900 PF00224 Pyruvate kinase, barrel domain ND446_08905 PF03279 Bacterial lipid A biosynthesis acyltransferase ND446_08910 PF01476 LysM domain ND446_08910 PF08525 Opacity-associated protein A N-terminal motif ND446_08910 PF01551 Peptidase family M23 ND446_08915 PF01297 Zinc-uptake complex component A periplasmic ND446_08920 PF00005 ABC transporter ND446_08925 PF00950 ABC 3 transport family ND446_08930 PF00854 POT family ND446_08935 PF17864 RuvB AAA lid domain ND446_08935 PF05491 RuvB C-terminal winged helix domain ND446_08935 PF05496 Holliday junction DNA helicase RuvB P-loop domain ND446_08940 PF07499 RuvA, C-terminal domain ND446_08940 PF01330 RuvA N terminal domain ND446_08945 PF02075 Crossover junction endodeoxyribonuclease RuvC ND446_08950 PF01709 Transcriptional regulator ND446_08955 PF00293 NUDIX domain ND446_08960 PF02938 GAD domain ND446_08960 PF00152 tRNA synthetases class II (D, K and N) ND446_08960 PF01336 OB-fold nucleic acid binding domain ND446_08970 PF01904 Protein of unknown function DUF72 ND446_08975 PF01124 MAPEG family ND446_08980 PF13649 Methyltransferase domain ND446_08985 PF08003 Protein of unknown function (DUF1698) ND446_08990 PF03932 CutC family ND446_08995 PF06185 YecM protein ND446_09000 PF00750 tRNA synthetases class I (R) ND446_09000 PF05746 DALR anticodon binding domain ND446_09000 PF03485 Arginyl tRNA synthetase N terminal domain ND446_09010 PF13332 Hemagglutinin repeat ND446_09010 PF05860 haemagglutination activity domain ND446_09020 PF03023 Lipid II flippase MurJ ND446_09025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND446_09030 PF04337 Protein of unknown function, DUF480 ND446_09035 PF13302 Acetyltransferase (GNAT) domain ND446_09040 PF07690 Major Facilitator Superfamily ND446_09050 PF07273 Protein of unknown function (DUF1439) ND446_09055 PF02613 Nitrate reductase delta subunit ND446_09060 PF02811 PHP domain ND446_09065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND446_09070 PF00854 POT family ND446_09080 PF03009 Glycerophosphoryl diester phosphodiesterase family ND446_09090 PF00990 Diguanylate cyclase, GGDEF domain ND446_09095 PF01740 STAS domain ND446_09095 PF00916 Sulfate permease family ND446_09100 PF00793 DAHP synthetase I family ND446_09105 PF13369 Transglutaminase-like superfamily ND446_09110 PF04247 Invasion gene expression up-regulator, SirB ND446_09115 PF13847 Methyltransferase domain ND446_09115 PF17827 PrmC N-terminal domain ND446_09120 PF03462 PCRF domain ND446_09120 PF00472 RF-1 domain ND446_09125 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ND446_09125 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ND446_09125 PF01488 Shikimate / quinate 5-dehydrogenase ND446_09130 PF03550 Outer membrane lipoprotein LolB ND446_09135 PF00288 GHMP kinases N terminal domain ND446_09135 PF08544 GHMP kinases C terminal ND446_09140 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ND446_09140 PF14572 Phosphoribosyl synthetase-associated domain ND446_09145 PF10762 Protein of unknown function (DUF2583) ND446_09150 PF01195 Peptidyl-tRNA hydrolase ND446_09160 PF01926 50S ribosome-binding GTPase ND446_09160 PF06071 Protein of unknown function (DUF933) ND446_09175 PF01590 GAF domain ND446_09175 PF02954 Bacterial regulatory protein, Fis family ND446_09175 PF00158 Sigma-54 interaction domain ND446_09180 PF00586 AIR synthase related protein, N-terminal domain ND446_09180 PF02769 AIR synthase related protein, C-terminal domain ND446_09185 PF01924 Hydrogenase formation hypA family ND446_09190 PF01455 HupF/HypC family ND446_09195 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND446_09200 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ND446_09205 PF11046 Transcriptional repressor of hyc and hyp operons ND446_09210 PF13247 4Fe-4S dicluster domain ND446_09215 PF00361 Proton-conducting membrane transporter ND446_09220 PF00146 NADH dehydrogenase ND446_09225 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND446_09225 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND446_09225 PF00374 Nickel-dependent hydrogenase ND446_09230 PF12838 4Fe-4S dicluster domain ND446_09235 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND446_09240 PF07450 Formate hydrogenlyase maturation protein HycH ND446_09245 PF01750 Hydrogenase maturation protease ND446_09250 PF12800 4Fe-4S binding domain ND446_09250 PF13247 4Fe-4S dicluster domain ND446_09255 PF01568 Molydopterin dinucleotide binding domain ND446_09255 PF00384 Molybdopterin oxidoreductase ND446_09255 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND446_09260 PF17788 HypF Kae1-like domain ND446_09260 PF01300 Telomere recombination ND446_09260 PF07503 HypF finger ND446_09260 PF00708 Acylphosphatase ND446_09265 PF03824 High-affinity nickel-transport protein ND446_09275 PF03466 LysR substrate binding domain ND446_09275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_09280 PF05962 HutD ND446_09285 PF01979 Amidohydrolase family ND446_09290 PF00392 Bacterial regulatory proteins, gntR family ND446_09290 PF07702 UTRA domain ND446_09295 PF01979 Amidohydrolase family ND446_09305 PF00267 Gram-negative porin ND446_09310 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ND446_09315 PF04996 Succinylarginine dihydrolase ND446_09320 PF00171 Aldehyde dehydrogenase family ND446_09325 PF04958 Arginine N-succinyltransferase beta subunit ND446_09330 PF00202 Aminotransferase class-III ND446_09335 PF00155 Aminotransferase class I and II ND446_09335 PF00392 Bacterial regulatory proteins, gntR family ND446_09340 PF01654 Cytochrome bd terminal oxidase subunit I ND446_09345 PF02322 Cytochrome bd terminal oxidase subunit II ND446_09355 PF00672 HAMP domain ND446_09355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_09355 PF07730 Histidine kinase ND446_09355 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ND446_09360 PF08021 Siderophore-interacting FAD-binding domain ND446_09360 PF04954 Siderophore-interacting protein ND446_09365 PF01699 Sodium/calcium exchanger protein ND446_09370 PF02562 PhoH-like protein ND446_09375 PF12833 Helix-turn-helix domain ND446_09375 PF02311 AraC-like ligand binding domain ND446_09390 PF02321 Outer membrane efflux protein ND446_09395 PF00529 HlyD membrane-fusion protein of T1SS ND446_09400 PF00664 ABC transporter transmembrane region ND446_09400 PF00005 ABC transporter ND446_09405 PF02974 Protease inhibitor Inh ND446_09410 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ND446_09410 PF00413 Matrixin ND446_09410 PF08548 Peptidase M10 serralysin C terminal ND446_09415 PF00939 Sodium:sulfate symporter transmembrane region ND446_09420 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND446_09420 PF00989 PAS fold ND446_09420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_09420 PF17203 Single cache domain 3 ND446_09425 PF00072 Response regulator receiver domain ND446_09430 PF03390 2-hydroxycarboxylate transporter family ND446_09435 PF00672 HAMP domain ND446_09435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND446_09435 PF02203 Tar ligand binding domain homologue ND446_09440 PF00672 HAMP domain ND446_09440 PF02203 Tar ligand binding domain homologue ND446_09440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND446_09445 PF01432 Peptidase family M3 ND446_09455 PF00232 Glycosyl hydrolase family 1 ND446_09460 PF00765 Autoinducer synthase ND446_09465 PF03472 Autoinducer binding domain ND446_09465 PF00196 Bacterial regulatory proteins, luxR family ND446_09470 PF00180 Isocitrate/isopropylmalate dehydrogenase ND446_09475 PF00849 RNA pseudouridylate synthase ND446_09480 PF00293 NUDIX domain ND446_09490 PF04356 Protein of unknown function (DUF489) ND446_09495 PF08328 Adenylosuccinate lyase C-terminal ND446_09495 PF00206 Lyase ND446_09505 PF00072 Response regulator receiver domain ND446_09505 PF00486 Transcriptional regulatory protein, C terminal ND446_09510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_09510 PF08918 PhoQ Sensor ND446_09515 PF08007 Cupin superfamily protein ND446_09520 PF07687 Peptidase dimerisation domain ND446_09520 PF01546 Peptidase family M20/M25/M40 ND446_09525 PF02146 Sir2 family ND446_09530 PF00480 ROK family ND446_09535 PF02687 FtsX-like permease family ND446_09535 PF12704 MacB-like periplasmic core domain ND446_09540 PF00005 ABC transporter ND446_09545 PF12704 MacB-like periplasmic core domain ND446_09545 PF02687 FtsX-like permease family ND446_09550 PF02559 CarD-like/TRCF domain ND446_09550 PF00271 Helicase conserved C-terminal domain ND446_09550 PF03461 TRCF domain ND446_09550 PF17757 UvrB interaction domain ND446_09550 PF00270 DEAD/DEAH box helicase ND446_09555 PF05433 Glycine zipper 2TM domain ND446_09560 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND446_09565 PF05728 Uncharacterised protein family (UPF0227) ND446_09570 PF00933 Glycosyl hydrolase family 3 N terminal domain ND446_09575 PF01636 Phosphotransferase enzyme family ND446_09580 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND446_09580 PF13036 Peptidoglycan-synthase activator LpoB ND446_09585 PF07233 Protein of unknown function (DUF1425) ND446_09590 PF01230 HIT domain ND446_09595 PF02378 Phosphotransferase system, EIIC ND446_09595 PF00367 phosphotransferase system, EIIB ND446_09600 PF01026 TatD related DNase ND446_09605 PF09115 DNA polymerase III, delta subunit, C terminal ND446_09610 PF02223 Thymidylate kinase ND446_09615 PF02618 YceG-like family ND446_09620 PF01063 Amino-transferase class IV ND446_09625 PF00109 Beta-ketoacyl synthase, N-terminal domain ND446_09625 PF02801 Beta-ketoacyl synthase, C-terminal domain ND446_09630 PF00550 Phosphopantetheine attachment site ND446_09640 PF00698 Acyl transferase domain ND446_09645 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ND446_09645 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ND446_09650 PF02504 Fatty acid synthesis protein ND446_09655 PF01783 Ribosomal L32p protein family ND446_09660 PF02620 Large ribosomal RNA subunit accumulation protein YceD ND446_09665 PF02545 Maf-like protein ND446_09670 PF01479 S4 domain ND446_09670 PF00849 RNA pseudouridylate synthase ND446_09675 PF12111 Polyribonucleotide phosphorylase C terminal ND446_09675 PF10150 Ribonuclease E/G family ND446_09675 PF00575 S1 RNA binding domain ND446_09685 PF03992 Antibiotic biosynthesis monooxygenase ND446_09690 PF01979 Amidohydrolase family ND446_09695 PF06183 DinI-like family ND446_09700 PF13991 BssS protein family ND446_09705 PF01266 FAD dependent oxidoreductase ND446_09710 PF00196 Bacterial regulatory proteins, luxR family ND446_09715 PF01594 AI-2E family transporter ND446_09720 PF00581 Rhodanese-like domain ND446_09720 PF12368 Rhodanase C-terminal ND446_09720 PF17773 UPF0176 acylphosphatase like domain ND446_09725 PF03279 Bacterial lipid A biosynthesis acyltransferase ND446_09735 PF00854 POT family ND446_09740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND446_09745 PF00535 Glycosyl transferase family 2 ND446_09750 PF04349 Periplasmic glucan biosynthesis protein, MdoG ND446_09755 PF01757 Acyltransferase family ND446_09765 PF03471 Transporter associated domain ND446_09765 PF00999 Sodium/hydrogen exchanger family ND446_09765 PF02080 TrkA-C domain ND446_09770 PF00484 Carbonic anhydrase ND446_09780 PF04358 DsrC like protein ND446_09785 PF00708 Acylphosphatase ND446_09790 PF10672 S-adenosylmethionine-dependent methyltransferase ND446_09790 PF17785 PUA-like domain ND446_09795 PF08755 Hemimethylated DNA-binding protein YccV like ND446_09800 PF13380 CoA binding domain ND446_09805 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ND446_09810 PF02142 MGS-like domain ND446_09815 PF12462 DNA helicase IV / RNA helicase N terminal ND446_09815 PF00580 UvrD/REP helicase N-terminal domain ND446_09815 PF13361 UvrD-like helicase C-terminal domain ND446_09820 PF03733 Inner membrane component domain ND446_09825 PF12805 FUSC-like inner membrane protein yccS ND446_09830 PF04994 TfoX C-terminal domain ND446_09830 PF04993 TfoX N-terminal domain ND446_09835 PF03846 Cell division inhibitor SulA ND446_09840 PF01389 OmpA-like transmembrane domain ND446_09840 PF00691 OmpA family ND446_09845 PF06303 MatP N-terminal domain ND446_09845 PF17414 MatP C-terminal ribbon-helix-helix domain ND446_09850 PF13654 AAA domain ND446_09850 PF05362 Lon protease (S16) C-terminal proteolytic domain ND446_09855 PF07977 FabA-like domain ND446_09860 PF04957 Ribosome modulation factor ND446_09865 PF03886 ABC-type transport auxiliary lipoprotein component ND446_09870 PF02470 MlaD protein ND446_09875 PF04403 Paraquat-inducible protein A ND446_09880 PF12848 ABC transporter ND446_09880 PF16326 ABC transporter C-terminal domain ND446_09880 PF00005 ABC transporter ND446_09885 PF10672 S-adenosylmethionine-dependent methyltransferase ND446_09885 PF01170 Putative RNA methylase family UPF0020 ND446_09885 PF02926 THUMP domain ND446_09890 PF03476 MOSC N-terminal beta barrel domain ND446_09890 PF00111 2Fe-2S iron-sulfur cluster binding domain ND446_09890 PF03473 MOSC domain ND446_09895 PF07126 Cell-division protein ZapC ND446_09900 PF01180 Dihydroorotate dehydrogenase ND446_09905 PF01433 Peptidase family M1 domain ND446_09905 PF11940 Domain of unknown function (DUF3458) Ig-like fold ND446_09905 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ND446_09910 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ND446_09910 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ND446_09915 PF00152 tRNA synthetases class II (D, K and N) ND446_09915 PF01336 OB-fold nucleic acid binding domain ND446_09920 PF00267 Gram-negative porin ND446_09925 PF00155 Aminotransferase class I and II ND446_09930 PF00753 Metallo-beta-lactamase superfamily ND446_09935 PF05951 Bacterial protein of unknown function (DUF882) ND446_09940 PF01471 Putative peptidoglycan binding domain ND446_09940 PF03734 L,D-transpeptidase catalytic domain ND446_09945 PF04310 MukB N-terminal ND446_09945 PF16330 MukB hinge domain ND446_09950 PF04288 MukE-like family ND446_09955 PF17193 MukF C-terminal domain ND446_09955 PF17192 MukF middle domain ND446_09955 PF03882 MukF winged-helix domain ND446_09960 PF13847 Methyltransferase domain ND446_09965 PF02698 DUF218 domain ND446_09970 PF01636 Phosphotransferase enzyme family ND446_09975 PF02348 Cytidylyltransferase ND446_09980 PF03966 Trm112p-like protein ND446_09985 PF00313 'Cold-shock' DNA-binding domain ND446_09990 PF00313 'Cold-shock' DNA-binding domain ND446_09995 PF07063 Domain of unknown function (DUF1338) ND446_10000 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ND446_10005 PF00664 ABC transporter transmembrane region ND446_10005 PF00005 ABC transporter ND446_10010 PF03772 Competence protein ND446_10010 PF00753 Metallo-beta-lactamase superfamily ND446_10015 PF00216 Bacterial DNA-binding protein ND446_10020 PF00575 S1 RNA binding domain ND446_10025 PF02224 Cytidylate kinase ND446_10030 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND446_10035 PF00266 Aminotransferase class-V ND446_10040 PF00710 Asparaginase, N-terminal ND446_10040 PF17763 Glutaminase/Asparaginase C-terminal domain ND446_10045 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ND446_10045 PF18381 YcaO cyclodehydratase C-terminal domain ND446_10050 PF01226 Formate/nitrite transporter ND446_10055 PF01228 Glycine radical ND446_10055 PF02901 Pyruvate formate lyase-like ND446_10060 PF04055 Radical SAM superfamily ND446_10065 PF07690 Major Facilitator Superfamily ND446_10070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND446_10070 PF02403 Seryl-tRNA synthetase N-terminal domain ND446_10075 PF00004 ATPase family associated with various cellular activities (AAA) ND446_10075 PF16193 AAA C-terminal domain ND446_10075 PF12002 MgsA AAA+ ATPase C terminal ND446_10080 PF03548 Outer membrane lipoprotein carrier protein LolA ND446_10085 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND446_10085 PF17854 FtsK alpha domain ND446_10085 PF09397 Ftsk gamma domain ND446_10085 PF01580 FtsK/SpoIIIE family ND446_10090 PF01037 Lrp/AsnC ligand binding domain ND446_10095 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND446_10100 PF00664 ABC transporter transmembrane region ND446_10100 PF00005 ABC transporter ND446_10105 PF00664 ABC transporter transmembrane region ND446_10105 PF00005 ABC transporter ND446_10110 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ND446_10115 PF01176 Translation initiation factor 1A / IF-1 ND446_10120 PF00004 ATPase family associated with various cellular activities (AAA) ND446_10120 PF07724 AAA domain (Cdc48 subfamily) ND446_10120 PF17871 AAA lid domain ND446_10120 PF02861 Clp amino terminal domain, pathogenicity island component ND446_10120 PF10431 C-terminal, D2-small domain, of ClpB protein ND446_10125 PF02617 ATP-dependent Clp protease adaptor protein ClpS ND446_10130 PF00313 'Cold-shock' DNA-binding domain ND446_10135 PF00005 ABC transporter ND446_10135 PF02687 FtsX-like permease family ND446_10135 PF12704 MacB-like periplasmic core domain ND446_10140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND446_10145 PF04393 Protein of unknown function (DUF535) ND446_10150 PF11398 Protein of unknown function (DUF2813) ND446_10155 PF03956 Lysine exporter LysO ND446_10160 PF03063 Prismane/CO dehydrogenase family ND446_10165 PF00175 Oxidoreductase NAD-binding domain ND446_10165 PF00970 Oxidoreductase FAD-binding domain ND446_10165 PF00111 2Fe-2S iron-sulfur cluster binding domain ND446_10170 PF01212 Beta-eliminating lyase ND446_10175 PF11066 Protein of unknown function (DUF2867) ND446_10175 PF13460 NAD(P)H-binding ND446_10180 PF01370 NAD dependent epimerase/dehydratase family ND446_10185 PF01906 Putative heavy-metal-binding ND446_10190 PF12883 Protein of unknown function (DUF3828) ND446_10195 PF00005 ABC transporter ND446_10200 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND446_10205 PF00528 Binding-protein-dependent transport system inner membrane component ND446_10210 PF00528 Binding-protein-dependent transport system inner membrane component ND446_10215 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND446_10220 PF05958 tRNA (Uracil-5-)-methyltransferase ND446_10225 PF10767 Protein of unknown function (DUF2593) ND446_10230 PF00528 Binding-protein-dependent transport system inner membrane component ND446_10235 PF00528 Binding-protein-dependent transport system inner membrane component ND446_10240 PF00005 ABC transporter ND446_10240 PF08402 TOBE domain ND446_10245 PF13416 Bacterial extracellular solute-binding protein ND446_10250 PF10722 Putative bacterial sensory transduction regulator ND446_10255 PF07214 Protein of unknown function (DUF1418) ND446_10260 PF00462 Glutaredoxin ND446_10265 PF02080 TrkA-C domain ND446_10265 PF06826 Predicted Permease Membrane Region ND446_10275 PF01569 PAP2 superfamily ND446_10280 PF01791 DeoC/LacD family aldolase ND446_10285 PF00455 DeoR C terminal sensor domain ND446_10285 PF08220 DeoR-like helix-turn-helix domain ND446_10295 PF03313 Serine dehydratase alpha chain ND446_10295 PF03315 Serine dehydratase beta chain ND446_10300 PF07943 Penicillin-binding protein 5, C-terminal domain ND446_10300 PF00768 D-alanyl-D-alanine carboxypeptidase ND446_10305 PF00571 CBS domain ND446_10305 PF00291 Pyridoxal-phosphate dependent enzyme ND446_10310 PF01053 Cys/Met metabolism PLP-dependent enzyme ND446_10325 PF00043 Glutathione S-transferase, C-terminal domain ND446_10325 PF13417 Glutathione S-transferase, N-terminal domain ND446_10330 PF01370 NAD dependent epimerase/dehydratase family ND446_10340 PF01634 ATP phosphoribosyltransferase ND446_10340 PF08029 HisG, C-terminal domain ND446_10345 PF00815 Histidinol dehydrogenase ND446_10350 PF00155 Aminotransferase class I and II ND446_10355 PF00475 Imidazoleglycerol-phosphate dehydratase ND446_10360 PF00117 Glutamine amidotransferase class-I ND446_10365 PF00977 Histidine biosynthesis protein ND446_10370 PF00977 Histidine biosynthesis protein ND446_10375 PF01502 Phosphoribosyl-AMP cyclohydrolase ND446_10375 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ND446_10385 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ND446_10385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ND446_10390 PF00483 Nucleotidyl transferase ND446_10395 PF00483 Nucleotidyl transferase ND446_10400 PF00571 CBS domain ND446_10400 PF03471 Transporter associated domain ND446_10400 PF03741 Integral membrane protein TerC family ND446_10405 PF03606 C4-dicarboxylate anaerobic carrier ND446_10410 PF05170 AsmA family ND446_10415 PF00692 dUTPase ND446_10420 PF00485 Phosphoribulokinase / Uridine kinase family ND446_10425 PF10609 NUBPL iron-transfer P-loop NTPase ND446_10430 PF09334 tRNA synthetases class I (M) ND446_10430 PF01588 Putative tRNA binding domain ND446_10440 PF03788 LrgA family ND446_10445 PF04172 LrgB-like family ND446_10450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND446_10450 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ND446_10455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_10455 PF03466 LysR substrate binding domain ND446_10465 PF00390 Malic enzyme, N-terminal domain ND446_10465 PF03949 Malic enzyme, NAD binding domain ND446_10470 PF02698 DUF218 domain ND446_10475 PF02653 Branched-chain amino acid transport system / permease component ND446_10480 PF00005 ABC transporter ND446_10485 PF13407 Periplasmic binding protein domain ND446_10490 PF00356 Bacterial regulatory proteins, lacI family ND446_10495 PF04235 Protein of unknown function (DUF418) ND446_10500 PF01227 GTP cyclohydrolase I ND446_10505 PF06779 Uncharacterised MFS-type transporter YbfB ND446_10510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_10510 PF03466 LysR substrate binding domain ND446_10515 PF08240 Alcohol dehydrogenase GroES-like domain ND446_10515 PF00107 Zinc-binding dehydrogenase ND446_10520 PF00756 Putative esterase ND446_10530 PF00994 Probable molybdopterin binding domain ND446_10530 PF03454 MoeA C-terminal region (domain IV) ND446_10530 PF03453 MoeA N-terminal region (domain I and II) ND446_10535 PF00899 ThiF family ND446_10540 PF00005 ABC transporter ND446_10540 PF12848 ABC transporter ND446_10545 PF16916 Dimerisation domain of Zinc Transporter ND446_10545 PF01545 Cation efflux family ND446_10550 PF03448 MgtE intracellular N domain ND446_10550 PF01769 Divalent cation transporter ND446_10550 PF00571 CBS domain ND446_10555 PF13505 Outer membrane protein beta-barrel domain ND446_10560 PF00892 EamA-like transporter family ND446_10565 PF13649 Methyltransferase domain ND446_10570 PF00210 Ferritin-like domain ND446_10575 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND446_10580 PF00528 Binding-protein-dependent transport system inner membrane component ND446_10585 PF00005 ABC transporter ND446_10590 PF05971 RNA methyltransferase ND446_10595 PF02885 Glycosyl transferase family, helical bundle domain ND446_10600 PF06733 DEAD_2 ND446_10600 PF13307 Helicase C-terminal domain ND446_10605 PF00267 Gram-negative porin ND446_10610 PF00892 EamA-like transporter family ND446_10620 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND446_10620 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND446_10620 PF01276 Orn/Lys/Arg decarboxylase, major domain ND446_10625 PF13520 Amino acid permease ND446_10630 PF00528 Binding-protein-dependent transport system inner membrane component ND446_10635 PF00005 ABC transporter ND446_10640 PF00528 Binding-protein-dependent transport system inner membrane component ND446_10645 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND446_10650 PF00581 Rhodanese-like domain ND446_10655 PF07308 Protein of unknown function (DUF1456) ND446_10660 PF00528 Binding-protein-dependent transport system inner membrane component ND446_10665 PF00528 Binding-protein-dependent transport system inner membrane component ND446_10675 PF00005 ABC transporter ND446_10680 PF04226 Transglycosylase associated protein ND446_10690 PF01844 HNH endonuclease ND446_10695 PF01928 CYTH domain ND446_10700 PF09330 D-lactate dehydrogenase, membrane binding ND446_10700 PF01565 FAD binding domain ND446_10705 PF00768 D-alanyl-D-alanine carboxypeptidase ND446_10715 PF01207 Dihydrouridine synthase (Dus) ND446_10720 PF00270 DEAD/DEAH box helicase ND446_10720 PF00271 Helicase conserved C-terminal domain ND446_10725 PF09209 Tetracyclin repressor-like, C-terminal domain ND446_10725 PF00440 Bacterial regulatory proteins, tetR family ND446_10730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND446_10735 PF00005 ABC transporter ND446_10750 PF01027 Inhibitor of apoptosis-promoting Bax1 ND446_10755 PF02391 MoaE protein ND446_10760 PF02597 ThiS family ND446_10765 PF01967 MoaC family ND446_10770 PF06463 Molybdenum Cofactor Synthesis C ND446_10770 PF04055 Radical SAM superfamily ND446_10775 PF01933 Uncharacterised protein family UPF0052 ND446_10780 PF00005 ABC transporter ND446_10785 PF01032 FecCD transport family ND446_10800 PF09905 DNA-binding protein VF530 ND446_10805 PF12344 Ultra-violet resistance protein B ND446_10805 PF00271 Helicase conserved C-terminal domain ND446_10805 PF17757 UvrB interaction domain ND446_10805 PF02151 UvrB/uvrC motif ND446_10805 PF04851 Type III restriction enzyme, res subunit ND446_10810 PF00005 ABC transporter ND446_10820 PF08241 Methyltransferase domain ND446_10825 PF00155 Aminotransferase class I and II ND446_10830 PF06968 Biotin and Thiamin Synthesis associated domain ND446_10830 PF04055 Radical SAM superfamily ND446_10835 PF00202 Aminotransferase class-III ND446_10840 PF10282 Lactonase, 7-bladed beta-propeller ND446_10850 PF00005 ABC transporter ND446_10850 PF03459 TOBE domain ND446_10855 PF00528 Binding-protein-dependent transport system inner membrane component ND446_10865 PF10766 Multidrug efflux pump-associated protein AcrZ ND446_10870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_10870 PF03459 TOBE domain ND446_10885 PF16363 GDP-mannose 4,6 dehydratase ND446_10890 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ND446_10890 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ND446_10895 PF10509 Galactokinase galactose-binding signature ND446_10895 PF00288 GHMP kinases N terminal domain ND446_10895 PF08544 GHMP kinases C terminal ND446_10900 PF01263 Aldose 1-epimerase ND446_10910 PF00300 Histidine phosphatase superfamily (branch 1) ND446_10915 PF00793 DAHP synthetase I family ND446_10920 PF00196 Bacterial regulatory proteins, luxR family ND446_10920 PF00072 Response regulator receiver domain ND446_10925 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND446_10925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_10925 PF00512 His Kinase A (phospho-acceptor) domain ND446_10925 PF01627 Hpt domain ND446_10925 PF00072 Response regulator receiver domain ND446_10925 PF00989 PAS fold ND446_10930 PF04973 Nicotinamide mononucleotide transporter ND446_10935 PF02445 Quinolinate synthetase A protein ND446_10965 PF13174 Tetratricopeptide repeat ND446_10965 PF16331 TolA binding protein trimerisation ND446_10970 PF00691 OmpA family ND446_10975 PF07676 WD40-like Beta Propeller Repeat ND446_10975 PF04052 TolB amino-terminal domain ND446_10980 PF06519 TolA C-terminal ND446_10980 PF06519 TolA C-terminal ND446_10985 PF02472 Biopolymer transport protein ExbD/TolR ND446_10990 PF01618 MotA/TolQ/ExbB proton channel family ND446_10995 PF03061 Thioesterase superfamily ND446_11000 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ND446_11005 PF08173 Membrane bound YbgT-like protein ND446_11010 PF02322 Cytochrome bd terminal oxidase subunit II ND446_11015 PF01654 Cytochrome bd terminal oxidase subunit I ND446_11020 PF02872 5'-nucleotidase, C-terminal domain ND446_11020 PF00149 Calcineurin-like phosphoesterase ND446_11025 PF02629 CoA binding domain ND446_11025 PF00549 CoA-ligase ND446_11030 PF08442 ATP-grasp domain ND446_11030 PF00549 CoA-ligase ND446_11035 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND446_11035 PF00364 Biotin-requiring enzyme ND446_11035 PF02817 e3 binding domain ND446_11040 PF16078 2-oxoglutarate dehydrogenase N-terminus ND446_11040 PF00676 Dehydrogenase E1 component ND446_11040 PF16870 2-oxoglutarate dehydrogenase C-terminal ND446_11040 PF02779 Transketolase, pyrimidine binding domain ND446_11045 PF13085 2Fe-2S iron-sulfur cluster binding domain ND446_11050 PF00890 FAD binding domain ND446_11050 PF02910 Fumarate reductase flavoprotein C-term ND446_11055 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND446_11060 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND446_11065 PF00285 Citrate synthase, C-terminal domain ND446_11075 PF01470 Pyroglutamyl peptidase ND446_11090 PF03746 LamB/YcsF family ND446_11095 PF02626 Carboxyltransferase domain, subdomain A and B ND446_11100 PF02682 Carboxyltransferase domain, subdomain C and D ND446_11105 PF01784 NIF3 (NGG1p interacting factor 3) ND446_11110 PF02112 cAMP phosphodiesterases class-II ND446_11115 PF03441 FAD binding domain of DNA photolyase ND446_11115 PF00875 DNA photolyase ND446_11120 PF08349 Protein of unknown function (DUF1722) ND446_11125 PF10725 Protein of unknown function (DUF2517) ND446_11130 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) ND446_11135 PF03814 Potassium-transporting ATPase A subunit ND446_11145 PF02669 K+-transporting ATPase, c chain ND446_11150 PF13493 Domain of unknown function (DUF4118) ND446_11150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_11150 PF13492 GAF domain ND446_11150 PF02702 Osmosensitive K+ channel His kinase sensor domain ND446_11150 PF00512 His Kinase A (phospho-acceptor) domain ND446_11155 PF00072 Response regulator receiver domain ND446_11155 PF00486 Transcriptional regulatory protein, C terminal ND446_11165 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND446_11165 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND446_11165 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND446_11165 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND446_11170 PF17206 SeqA protein N-terminal domain ND446_11170 PF03925 SeqA protein C-terminal domain ND446_11175 PF12697 Alpha/beta hydrolase family ND446_11180 PF01402 Ribbon-helix-helix protein, copG family ND446_11185 PF00672 HAMP domain ND446_11185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND446_11185 PF02203 Tar ligand binding domain homologue ND446_11190 PF00258 Flavodoxin ND446_11195 PF01475 Ferric uptake regulator family ND446_11200 PF03173 Putative carbohydrate binding domain ND446_11200 PF00728 Glycosyl hydrolase family 20, catalytic domain ND446_11200 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ND446_11200 PF02838 Glycosyl hydrolase family 20, domain 2 ND446_11205 PF13982 YbfN-like lipoprotein ND446_11210 PF03573 outer membrane porin, OprD family ND446_11215 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND446_11215 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ND446_11220 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND446_11220 PF00367 phosphotransferase system, EIIB ND446_11220 PF02378 Phosphotransferase system, EIIC ND446_11225 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ND446_11230 PF01979 Amidohydrolase family ND446_11235 PF01047 MarR family ND446_11235 PF00480 ROK family ND446_11240 PF13344 Haloacid dehalogenase-like hydrolase ND446_11245 PF00733 Asparagine synthase ND446_11245 PF13537 Glutamine amidotransferase domain ND446_11280 PF01494 FAD binding domain ND446_11285 PF04055 Radical SAM superfamily ND446_11285 PF01938 TRAM domain ND446_11285 PF00919 Uncharacterized protein family UPF0004 ND446_11290 PF02562 PhoH-like protein ND446_11295 PF02130 Uncharacterized protein family UPF0054 ND446_11300 PF00571 CBS domain ND446_11300 PF03471 Transporter associated domain ND446_11305 PF00795 Carbon-nitrogen hydrolase ND446_11310 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND446_11315 PF00528 Binding-protein-dependent transport system inner membrane component ND446_11320 PF00528 Binding-protein-dependent transport system inner membrane component ND446_11325 PF00005 ABC transporter ND446_11330 PF07295 Zinc-ribbon containing domain ND446_11335 PF08264 Anticodon-binding domain of tRNA ND446_11335 PF00133 tRNA synthetases class I (I, L, M and V) ND446_11335 PF13603 Leucyl-tRNA synthetase, Domain 2 ND446_11340 PF04390 Lipopolysaccharide-assembly ND446_11345 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ND446_11345 PF06144 DNA polymerase III, delta subunit ND446_11350 PF01467 Cytidylyltransferase-like ND446_11360 PF02590 Predicted SPOUT methyltransferase ND446_11365 PF03717 Penicillin-binding Protein dimerisation domain ND446_11365 PF00905 Penicillin binding protein transpeptidase domain ND446_11370 PF01098 Cell cycle protein ND446_11375 PF03330 Lytic transglycolase ND446_11375 PF05036 Sporulation related domain ND446_11380 PF07943 Penicillin-binding protein 5, C-terminal domain ND446_11380 PF00768 D-alanyl-D-alanine carboxypeptidase ND446_11385 PF04359 Protein of unknown function (DUF493) ND446_11390 PF03099 Biotin/lipoate A/B protein ligase family ND446_11395 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ND446_11395 PF04055 Radical SAM superfamily ND446_11400 PF02416 mttA/Hcf106 family ND446_11405 PF00990 Diguanylate cyclase, GGDEF domain ND446_11405 PF05230 MASE2 domain ND446_11415 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ND446_11420 PF00313 'Cold-shock' DNA-binding domain ND446_11425 PF00313 'Cold-shock' DNA-binding domain ND446_11430 PF00196 Bacterial regulatory proteins, luxR family ND446_11460 PF00440 Bacterial regulatory proteins, tetR family ND446_11465 PF00990 Diguanylate cyclase, GGDEF domain ND446_11465 PF00072 Response regulator receiver domain ND446_11470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_11470 PF00672 HAMP domain ND446_11470 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND446_11470 PF00072 Response regulator receiver domain ND446_11470 PF01627 Hpt domain ND446_11470 PF00512 His Kinase A (phospho-acceptor) domain ND446_11475 PF16355 Domain of unknown function (DUF4982) ND446_11475 PF00703 Glycosyl hydrolases family 2 ND446_11475 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND446_11475 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND446_11495 PF07238 PilZ domain ND446_11495 PF00535 Glycosyl transferase family 2 ND446_11495 PF03552 Cellulose synthase ND446_11505 PF00483 Nucleotidyl transferase ND446_11515 PF00486 Transcriptional regulatory protein, C terminal ND446_11515 PF00072 Response regulator receiver domain ND446_11525 PF00343 Carbohydrate phosphorylase ND446_11535 PF01292 Prokaryotic cytochrome b561 ND446_11570 PF03960 ArsC family ND446_11575 PF02040 Arsenical pump membrane protein ND446_11580 PF01022 Bacterial regulatory protein, arsR family ND446_11590 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ND446_11590 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ND446_11625 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND446_11625 PF02753 Pili assembly chaperone PapD, C-terminal domain ND446_11630 PF13954 PapC N-terminal domain ND446_11630 PF00577 Outer membrane usher protein ND446_11630 PF13953 PapC C-terminal domain ND446_11635 PF00419 Fimbrial protein ND446_11650 PF09190 DALR domain ND446_11650 PF01406 tRNA synthetases class I (C) catalytic domain ND446_11655 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND446_11660 PF00149 Calcineurin-like phosphoesterase ND446_11665 PF00731 AIR carboxylase ND446_11670 PF02222 ATP-grasp domain ND446_11670 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ND446_11680 PF00005 ABC transporter ND446_11685 PF13472 GDSL-like Lipase/Acylhydrolase family ND446_11690 PF00106 short chain dehydrogenase ND446_11695 PF00085 Thioredoxin ND446_11700 PF16200 C-terminal region of band_7 ND446_11700 PF01145 SPFH domain / Band 7 family ND446_11705 PF01957 NfeD-like C-terminal, partner-binding ND446_11710 PF13411 MerR HTH family regulatory protein ND446_11715 PF00403 Heavy-metal-associated domain ND446_11720 PF01963 TraB family ND446_11725 PF04073 Aminoacyl-tRNA editing domain ND446_11730 PF00149 Calcineurin-like phosphoesterase ND446_11730 PF02872 5'-nucleotidase, C-terminal domain ND446_11735 PF00999 Sodium/hydrogen exchanger family ND446_11735 PF02254 TrkA-N domain ND446_11740 PF00294 pfkB family carbohydrate kinase ND446_11750 PF02706 Chain length determinant protein ND446_11755 PF01370 NAD dependent epimerase/dehydratase family ND446_11760 PF00535 Glycosyl transferase family 2 ND446_11790 PF01370 NAD dependent epimerase/dehydratase family ND446_11795 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND446_11800 PF16363 GDP-mannose 4,6 dehydratase ND446_11805 PF00483 Nucleotidyl transferase ND446_11810 PF00970 Oxidoreductase FAD-binding domain ND446_11810 PF00175 Oxidoreductase NAD-binding domain ND446_11810 PF00111 2Fe-2S iron-sulfur cluster binding domain ND446_11815 PF00762 Ferrochelatase ND446_11820 PF05191 Adenylate kinase, active site lid ND446_11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_11825 PF00183 Hsp90 protein ND446_11830 PF13662 Toprim domain ND446_11830 PF02132 RecR protein ND446_11835 PF02575 YbaB/EbfC DNA-binding family ND446_11840 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ND446_11840 PF12170 DNA polymerase III tau subunit V interacting with alpha ND446_11840 PF12169 DNA polymerase III subunits gamma and tau domain III ND446_11845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_11845 PF00512 His Kinase A (phospho-acceptor) domain ND446_11850 PF00072 Response regulator receiver domain ND446_11850 PF00486 Transcriptional regulatory protein, C terminal ND446_11865 PF01970 Tripartite tricarboxylate transporter TctA family ND446_11870 PF00156 Phosphoribosyl transferase domain ND446_11875 PF04304 Protein of unknown function (DUF454) ND446_11885 PF10689 Protein of unknown function (DUF2496) ND446_11890 PF12795 Mechanosensitive ion channel porin domain ND446_11890 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND446_11890 PF00924 Mechanosensitive ion channel ND446_11895 PF02635 DsrE/DsrF-like family ND446_11900 PF00440 Bacterial regulatory proteins, tetR family ND446_11900 PF08361 MAATS-type transcriptional repressor, C-terminal region ND446_11905 PF00529 HlyD membrane-fusion protein of T1SS ND446_11905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND446_11910 PF00873 AcrB/AcrD/AcrF family ND446_11915 PF01197 Ribosomal protein L31 ND446_11920 PF00444 Ribosomal protein L36 ND446_11930 PF10757 Biofilm formation regulator YbaJ ND446_11935 PF05321 Haemolysin expression modulating protein ND446_11945 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND446_11955 PF00909 Ammonium Transporter Family ND446_11960 PF00543 Nitrogen regulatory protein P-II ND446_11965 PF00664 ABC transporter transmembrane region ND446_11965 PF00005 ABC transporter ND446_11970 PF00664 ABC transporter transmembrane region ND446_11970 PF00005 ABC transporter ND446_11975 PF01037 Lrp/AsnC ligand binding domain ND446_11975 PF13404 AsnC-type helix-turn-helix domain ND446_11990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND446_11990 PF12793 Sugar transport-related sRNA regulator N-term ND446_11995 PF06508 Queuosine biosynthesis protein QueC ND446_12010 PF13145 PPIC-type PPIASE domain ND446_12015 PF00216 Bacterial DNA-binding protein ND446_12020 PF00004 ATPase family associated with various cellular activities (AAA) ND446_12020 PF02190 ATP-dependent protease La (LON) substrate-binding domain ND446_12020 PF05362 Lon protease (S16) C-terminal proteolytic domain ND446_12025 PF10431 C-terminal, D2-small domain, of ClpB protein ND446_12025 PF06689 ClpX C4-type zinc finger ND446_12025 PF07724 AAA domain (Cdc48 subfamily) ND446_12030 PF00574 Clp protease ND446_12035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND446_12035 PF05698 Bacterial trigger factor protein (TF) C-terminus ND446_12035 PF05697 Bacterial trigger factor protein (TF) ND446_12040 PF01722 BolA-like protein ND446_12045 PF03923 Uncharacterized lipoprotein ND446_12045 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND446_12050 PF07690 Major Facilitator Superfamily ND446_12055 PF03502 Nucleoside-specific channel-forming protein, Tsx ND446_12060 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ND446_12060 PF06481 COX Aromatic Rich Motif ND446_12065 PF00115 Cytochrome C and Quinol oxidase polypeptide I ND446_12070 PF00510 Cytochrome c oxidase subunit III ND446_12075 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ND446_12080 PF01040 UbiA prenyltransferase family ND446_12085 PF07690 Major Facilitator Superfamily ND446_12090 PF04461 Protein of unknown function (DUF520) ND446_12095 PF08546 Ketopantoate reductase PanE/ApbA C terminal ND446_12095 PF02558 Ketopantoate reductase PanE/ApbA ND446_12100 PF01965 DJ-1/PfpI family ND446_12105 PF07690 Major Facilitator Superfamily ND446_12115 PF00512 His Kinase A (phospho-acceptor) domain ND446_12115 PF00672 HAMP domain ND446_12115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_12120 PF00072 Response regulator receiver domain ND446_12120 PF02954 Bacterial regulatory protein, Fis family ND446_12120 PF14532 Sigma-54 interaction domain ND446_12125 PF02568 Thiamine biosynthesis protein (ThiI) ND446_12125 PF02926 THUMP domain ND446_12130 PF02609 Exonuclease VII small subunit ND446_12135 PF00348 Polyprenyl synthetase ND446_12140 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ND446_12140 PF02779 Transketolase, pyrimidine binding domain ND446_12140 PF02780 Transketolase, C-terminal domain ND446_12145 PF04608 Phosphatidylglycerophosphatase A ND446_12150 PF02769 AIR synthase related protein, C-terminal domain ND446_12150 PF00586 AIR synthase related protein, N-terminal domain ND446_12155 PF01029 NusB family ND446_12160 PF00885 6,7-dimethyl-8-ribityllumazine synthase ND446_12165 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND446_12165 PF01872 RibD C-terminal domain ND446_12170 PF03477 ATP cone domain ND446_12175 PF07549 SecD/SecF GG Motif ND446_12175 PF02355 Protein export membrane protein ND446_12180 PF02355 Protein export membrane protein ND446_12180 PF07549 SecD/SecF GG Motif ND446_12180 PF13721 SecD export protein N-terminal TM region ND446_12185 PF02699 Preprotein translocase subunit ND446_12190 PF01702 Queuine tRNA-ribosyltransferase ND446_12195 PF02547 Queuosine biosynthesis protein ND446_12200 PF04336 Acyl carrier protein phosphodiesterase ND446_12205 PF10417 C-terminal domain of 1-Cys peroxiredoxin ND446_12205 PF00578 AhpC/TSA family ND446_12215 PF02903 Alpha amylase, N-terminal ig-like domain ND446_12215 PF00128 Alpha amylase, catalytic domain ND446_12220 PF00324 Amino acid permease ND446_12225 PF05525 Branched-chain amino acid transport protein ND446_12230 PF12849 PBP superfamily domain ND446_12235 PF11808 Phosphate regulon sensor protein PhoR ND446_12235 PF00512 His Kinase A (phospho-acceptor) domain ND446_12235 PF00989 PAS fold ND446_12235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_12240 PF00072 Response regulator receiver domain ND446_12240 PF00486 Transcriptional regulatory protein, C terminal ND446_12245 PF00149 Calcineurin-like phosphoesterase ND446_12245 PF12320 Type 5 capsule protein repressor C-terminal domain ND446_12250 PF13476 AAA domain ND446_12255 PF00480 ROK family ND446_12260 PF04381 Putative exonuclease, RdgC ND446_12265 PF06865 Pyrimidine/purine nucleoside phosphorylase ND446_12270 PF07302 AroM protein ND446_12290 PF01202 Shikimate kinase ND446_12295 PF07715 TonB-dependent Receptor Plug Domain ND446_12295 PF00593 TonB dependent receptor ND446_12320 PF07238 PilZ domain ND446_12320 PF07317 Flagellar regulator YcgR ND446_12325 PF00171 Aldehyde dehydrogenase family ND446_12330 PF01472 PUA domain ND446_12330 PF00696 Amino acid kinase family ND446_12335 PF07417 Sigma factor-binding transcriptional regulator Crl ND446_12340 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ND446_12345 PF00156 Phosphoribosyl transferase domain ND446_12350 PF07687 Peptidase dimerisation domain ND446_12350 PF01546 Peptidase family M20/M25/M40 ND446_12355 PF00817 impB/mucB/samB family ND446_12355 PF11799 impB/mucB/samB family C-terminal domain ND446_12355 PF11798 IMS family HHH motif ND446_12360 PF03009 Glycerophosphoryl diester phosphodiesterase family ND446_12365 PF04400 (Na+)-NQR maturation NqrM ND446_12370 PF02424 ApbE family ND446_12375 PF00175 Oxidoreductase NAD-binding domain ND446_12375 PF00970 Oxidoreductase FAD-binding domain ND446_12375 PF00111 2Fe-2S iron-sulfur cluster binding domain ND446_12380 PF02508 Rnf-Nqr subunit, membrane protein ND446_12385 PF02508 Rnf-Nqr subunit, membrane protein ND446_12390 PF04205 FMN-binding domain ND446_12395 PF03116 NQR2, RnfD, RnfE family ND446_12400 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ND446_12400 PF11973 NQRA C-terminal domain ND446_12405 PF03734 L,D-transpeptidase catalytic domain ND446_12410 PF13230 Glutamine amidotransferases class-II ND446_12415 PF13580 SIS domain ND446_12420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND446_12420 PF09317 Domain of unknown function (DUF1974) ND446_12420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND446_12430 PF00929 Exonuclease ND446_12435 PF00075 RNase H ND446_12440 PF08241 Methyltransferase domain ND446_12445 PF00753 Metallo-beta-lactamase superfamily ND446_12445 PF16123 Hydroxyacylglutathione hydrolase C-terminus ND446_12450 PF01464 Transglycosylase SLT domain ND446_12450 PF01476 LysM domain ND446_12455 PF03372 Endonuclease/Exonuclease/phosphatase family ND446_12490 PF00004 ATPase family associated with various cellular activities (AAA) ND446_12490 PF07724 AAA domain (Cdc48 subfamily) ND446_12490 PF17871 AAA lid domain ND446_12490 PF02861 Clp amino terminal domain, pathogenicity island component ND446_12490 PF10431 C-terminal, D2-small domain, of ClpB protein ND446_12495 PF02578 Multi-copper polyphenol oxidoreductase laccase ND446_12500 PF00849 RNA pseudouridylate synthase ND446_12500 PF01479 S4 domain ND446_12505 PF13525 Outer membrane lipoprotein ND446_12510 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND446_12515 PF01817 Chorismate mutase type II ND446_12515 PF00800 Prephenate dehydratase ND446_12520 PF01817 Chorismate mutase type II ND446_12520 PF02153 Prephenate dehydrogenase ND446_12525 PF00793 DAHP synthetase I family ND446_12530 PF04397 LytTr DNA-binding domain ND446_12530 PF00072 Response regulator receiver domain ND446_12535 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND446_12540 PF04338 Protein of unknown function, DUF481 ND446_12545 PF01245 Ribosomal protein L19 ND446_12550 PF01746 tRNA (Guanine-1)-methyltransferase ND446_12555 PF05239 PRC-barrel domain ND446_12555 PF01782 RimM N-terminal domain ND446_12560 PF00886 Ribosomal protein S16 ND446_12565 PF02881 SRP54-type protein, helical bundle domain ND446_12565 PF02978 Signal peptide binding domain ND446_12565 PF00448 SRP54-type protein, GTPase domain ND446_12570 PF01578 Cytochrome C assembly protein ND446_12575 PF00571 CBS domain ND446_12575 PF03471 Transporter associated domain ND446_12575 PF01595 Cyclin M transmembrane N-terminal domain ND446_12580 PF02664 S-Ribosylhomocysteinase (LuxS) ND446_12585 PF04262 Glutamate-cysteine ligase ND446_12590 PF09335 SNARE associated Golgi protein ND446_12595 PF13419 Haloacid dehalogenase-like hydrolase ND446_12600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND446_12600 PF01411 tRNA synthetases class II (A) ND446_12605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND446_12605 PF01411 tRNA synthetases class II (A) ND446_12630 PF02599 Global regulator protein family ND446_12635 PF02272 DHHA1 domain ND446_12635 PF01411 tRNA synthetases class II (A) ND446_12635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND446_12640 PF02631 RecX family ND446_12645 PF00154 recA bacterial DNA recombination protein ND446_12650 PF02464 Competence-damaged protein ND446_12655 PF07690 Major Facilitator Superfamily ND446_12660 PF05681 Fumarate hydratase (Fumerase) ND446_12660 PF05683 Fumarase C-terminus ND446_12685 PF11356 Type II secretion system protein C ND446_12690 PF00263 Bacterial type II and III secretion system protein ND446_12690 PF03958 Bacterial type II/III secretion system short domain ND446_12695 PF00437 Type II/IV secretion system protein ND446_12700 PF00482 Type II secretion system (T2SS), protein F ND446_12705 PF07963 Prokaryotic N-terminal methylation motif ND446_12705 PF08334 Type II secretion system (T2SS), protein G ND446_12715 PF07963 Prokaryotic N-terminal methylation motif ND446_12715 PF02501 Type II secretion system (T2SS), protein I ND446_12720 PF11612 Type II secretion system (T2SS), protein J ND446_12720 PF07963 Prokaryotic N-terminal methylation motif ND446_12725 PF03934 Type II secretion system (T2SS), protein K ND446_12730 PF12693 GspL periplasmic domain ND446_12730 PF05134 Type II secretion system (T2SS), protein L ND446_12740 PF06750 Bacterial Peptidase A24 N-terminal domain ND446_12740 PF01478 Type IV leader peptidase family ND446_12755 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND446_12760 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND446_12760 PF18416 N-acetylglucosamine binding protein domain 2 ND446_12780 PF00550 Phosphopantetheine attachment site ND446_12805 PF07720 Tetratricopeptide repeat ND446_12810 PF01312 FlhB HrpN YscU SpaS Family ND446_12815 PF01311 Bacterial export proteins, family 1 ND446_12820 PF01313 Bacterial export proteins, family 3 ND446_12825 PF00813 FliP family ND446_12830 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND446_12845 PF18269 T3SS EscN ATPase C-terminal domain ND446_12845 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND446_12845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND446_12855 PF00771 FHIPEP family ND446_12860 PF07201 HrpJ-like domain ND446_12865 PF00263 Bacterial type II and III secretion system protein ND446_12865 PF03958 Bacterial type II/III secretion system short domain ND446_12870 PF12833 Helix-turn-helix domain ND446_12890 PF01514 Secretory protein of YscJ/FliF family ND446_12910 PF01464 Transglycosylase SLT domain ND446_12925 PF00196 Bacterial regulatory proteins, luxR family ND446_12925 PF00072 Response regulator receiver domain ND446_12930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_12930 PF00512 His Kinase A (phospho-acceptor) domain ND446_12930 PF09308 LuxQ, periplasmic ND446_12930 PF00072 Response regulator receiver domain ND446_12940 PF01624 MutS domain I ND446_12940 PF05192 MutS domain III ND446_12940 PF05190 MutS family domain IV ND446_12940 PF00488 MutS domain V ND446_12940 PF05188 MutS domain II ND446_12945 PF00140 Sigma-70 factor, region 1.2 ND446_12945 PF04542 Sigma-70 region 2 ND446_12945 PF04539 Sigma-70 region 3 ND446_12945 PF04545 Sigma-70, region 4 ND446_12950 PF01476 LysM domain ND446_12950 PF01551 Peptidase family M23 ND446_12960 PF01975 Survival protein SurE ND446_12965 PF01142 tRNA pseudouridine synthase D (TruD) ND446_12970 PF02542 YgbB family ND446_12975 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ND446_12980 PF04977 Septum formation initiator ND446_12985 PF12084 Protein of unknown function (DUF3561) ND446_12995 PF00009 Elongation factor Tu GTP binding domain ND446_13000 PF01507 Phosphoadenosine phosphosulfate reductase family ND446_13005 PF10414 Sirohaem synthase dimerisation region ND446_13005 PF14824 Sirohaem biosynthesis protein central ND446_13005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND446_13010 PF04389 Peptidase family M28 ND446_13025 PF01507 Phosphoadenosine phosphosulfate reductase family ND446_13030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND446_13030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND446_13035 PF00175 Oxidoreductase NAD-binding domain ND446_13035 PF00667 FAD binding domain ND446_13035 PF00258 Flavodoxin ND446_13040 PF01242 6-pyruvoyl tetrahydropterin synthase ND446_13045 PF04055 Radical SAM superfamily ND446_13050 PF00113 Enolase, C-terminal TIM barrel domain ND446_13050 PF03952 Enolase, N-terminal domain ND446_13055 PF06418 CTP synthase N-terminus ND446_13055 PF00117 Glutamine amidotransferase class-I ND446_13060 PF03819 MazG nucleotide pyrophosphohydrolase domain ND446_13065 PF13291 ACT domain ND446_13065 PF04607 Region found in RelA / SpoT proteins ND446_13065 PF02824 TGS domain ND446_13070 PF01938 TRAM domain ND446_13070 PF05958 tRNA (Uracil-5-)-methyltransferase ND446_13075 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND446_13075 PF00072 Response regulator receiver domain ND446_13075 PF01627 Hpt domain ND446_13075 PF00512 His Kinase A (phospho-acceptor) domain ND446_13075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_13075 PF00672 HAMP domain ND446_13080 PF00595 PDZ domain ND446_13085 PF13286 Phosphohydrolase-associated domain ND446_13085 PF01966 HD domain ND446_13090 PF01048 Phosphorylase superfamily ND446_13095 PF01497 Periplasmic binding protein ND446_13100 PF03458 UPF0126 domain ND446_13105 PF01521 Iron-sulphur cluster biosynthesis ND446_13110 PF00654 Voltage gated chloride channel ND446_13115 PF00202 Aminotransferase class-III ND446_13120 PF14814 Bifunctional transglycosylase second domain ND446_13120 PF00912 Transglycosylase ND446_13120 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ND446_13120 PF00905 Penicillin binding protein transpeptidase domain ND446_13125 PF00270 DEAD/DEAH box helicase ND446_13125 PF00271 Helicase conserved C-terminal domain ND446_13125 PF08482 ATP-dependent helicase C-terminal ND446_13125 PF04408 Helicase associated domain (HA2) ND446_13130 PF02834 LigT like Phosphoesterase ND446_13135 PF03749 Sugar fermentation stimulation protein RE domain ND446_13135 PF17746 SfsA N-terminal OB domain ND446_13140 PF01258 Prokaryotic dksA/traR C4-type zinc finger ND446_13145 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND446_13150 PF12627 Probable RNA and SrmB- binding site of polymerase A ND446_13150 PF12626 Polymerase A arginine-rich C-terminus ND446_13150 PF01743 Poly A polymerase head domain ND446_13155 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ND446_13160 PF02548 Ketopantoate hydroxymethyltransferase ND446_13165 PF02569 Pantoate-beta-alanine ligase ND446_13170 PF02261 Aspartate decarboxylase ND446_13175 PF01522 Polysaccharide deacetylase ND446_13180 PF01061 ABC-2 type transporter ND446_13185 PF00005 ABC transporter ND446_13190 PF00484 Carbonic anhydrase ND446_13195 PF00156 Phosphoribosyl transferase domain ND446_13200 PF00394 Multicopper oxidase ND446_13200 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND446_13200 PF07732 Multicopper oxidase ND446_13200 PF07731 Multicopper oxidase ND446_13205 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND446_13210 PF17284 Spermidine synthase tetramerisation domain ND446_13215 PF02675 S-adenosylmethionine decarboxylase ND446_13220 PF00892 EamA-like transporter family ND446_13225 PF06062 Uncharacterised protein family (UPF0231) ND446_13230 PF06434 Aconitate hydratase 2 N-terminus ND446_13230 PF11791 Aconitate B N-terminal domain ND446_13230 PF00330 Aconitase family (aconitate hydratase) ND446_13250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND446_13250 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND446_13255 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND446_13255 PF02817 e3 binding domain ND446_13255 PF00364 Biotin-requiring enzyme ND446_13260 PF17831 Pyruvate dehydrogenase E1 component middle domain ND446_13260 PF00456 Transketolase, thiamine diphosphate binding domain ND446_13265 PF07729 FCD domain ND446_13265 PF00392 Bacterial regulatory proteins, gntR family ND446_13270 PF00324 Amino acid permease ND446_13275 PF07979 Intimin C-type lectin domain ND446_13275 PF01476 LysM domain ND446_13275 PF02368 Bacterial Ig-like domain (group 2) ND446_13275 PF02369 Bacterial Ig-like domain (group 1) ND446_13275 PF11924 Inverse autotransporter, beta-domain ND446_13280 PF17113 Regulatory signalling modulator protein AmpE ND446_13285 PF01510 N-acetylmuramoyl-L-alanine amidase ND446_13290 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ND446_13290 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ND446_13295 PF07963 Prokaryotic N-terminal methylation motif ND446_13300 PF00437 Type II/IV secretion system protein ND446_13300 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ND446_13305 PF00482 Type II secretion system (T2SS), protein F ND446_13310 PF00478 IMP dehydrogenase / GMP reductase domain ND446_13315 PF01121 Dephospho-CoA kinase ND446_13320 PF07072 Cell division protein ND446_13325 PF03884 DNA gyrase inhibitor YacG ND446_13330 PF00293 NUDIX domain ND446_13335 PF01043 SecA preprotein cross-linking domain ND446_13335 PF02810 SEC-C motif ND446_13335 PF07516 SecA Wing and Scaffold domain ND446_13335 PF07517 SecA DEAD-like domain ND446_13340 PF06558 Secretion monitor precursor protein (SecM) ND446_13350 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ND446_13355 PF12327 FtsZ family, C-terminal domain ND446_13355 PF00091 Tubulin/FtsZ family, GTPase domain ND446_13360 PF02491 SHS2 domain inserted in FTSA ND446_13365 PF03799 Cell division protein FtsQ ND446_13365 PF08478 POTRA domain, FtsQ-type ND446_13370 PF07478 D-ala D-ala ligase C-terminus ND446_13370 PF01820 D-ala D-ala ligase N-terminus ND446_13375 PF02875 Mur ligase family, glutamate ligase domain ND446_13375 PF08245 Mur ligase middle domain ND446_13375 PF01225 Mur ligase family, catalytic domain ND446_13380 PF04101 Glycosyltransferase family 28 C-terminal domain ND446_13380 PF03033 Glycosyltransferase family 28 N-terminal domain ND446_13385 PF01098 Cell cycle protein ND446_13390 PF02875 Mur ligase family, glutamate ligase domain ND446_13390 PF08245 Mur ligase middle domain ND446_13395 PF00953 Glycosyl transferase family 4 ND446_13395 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ND446_13400 PF01225 Mur ligase family, catalytic domain ND446_13400 PF08245 Mur ligase middle domain ND446_13400 PF02875 Mur ligase family, glutamate ligase domain ND446_13405 PF02875 Mur ligase family, glutamate ligase domain ND446_13405 PF01225 Mur ligase family, catalytic domain ND446_13405 PF08245 Mur ligase middle domain ND446_13410 PF00905 Penicillin binding protein transpeptidase domain ND446_13410 PF03717 Penicillin-binding Protein dimerisation domain ND446_13415 PF04999 Cell division protein FtsL ND446_13420 PF01795 MraW methylase family ND446_13425 PF02381 MraZ protein, putative antitoxin-like ND446_13430 PF06610 L-alanine exporter ND446_13435 PF00356 Bacterial regulatory proteins, lacI family ND446_13435 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND446_13440 PF10369 Small subunit of acetolactate synthase ND446_13445 PF00205 Thiamine pyrophosphate enzyme, central domain ND446_13445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND446_13445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND446_13450 PF00501 AMP-binding enzyme ND446_13455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_13455 PF03466 LysR substrate binding domain ND446_13460 PF00682 HMGL-like ND446_13460 PF08502 LeuA allosteric (dimerisation) domain ND446_13465 PF00180 Isocitrate/isopropylmalate dehydrogenase ND446_13470 PF00330 Aconitase family (aconitate hydratase) ND446_13475 PF00694 Aconitase C-terminal domain ND446_13480 PF07690 Major Facilitator Superfamily ND446_13490 PF12793 Sugar transport-related sRNA regulator N-term ND446_13490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND446_13500 PF00528 Binding-protein-dependent transport system inner membrane component ND446_13505 PF00005 ABC transporter ND446_13510 PF09335 SNARE associated Golgi protein ND446_13515 PF00136 DNA polymerase family B ND446_13515 PF03104 DNA polymerase family B, exonuclease domain ND446_13520 PF00271 Helicase conserved C-terminal domain ND446_13520 PF12137 RNA polymerase recycling family C-terminal ND446_13520 PF00176 SNF2 family N-terminal domain ND446_13520 PF18339 RapA N-terminal Tudor like domain 1 ND446_13520 PF18337 RapA N-terminal Tudor like domain ND446_13525 PF00849 RNA pseudouridylate synthase ND446_13530 PF00226 DnaJ domain ND446_13530 PF05099 Tellurite resistance protein TerB ND446_13535 PF04453 LPS transport system D ND446_13535 PF03968 OstA-like protein ND446_13540 PF00639 PPIC-type PPIASE domain ND446_13540 PF09312 SurA N-terminal domain ND446_13545 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ND446_13550 PF00398 Ribosomal RNA adenine dimethylase ND446_13555 PF04379 ApaG domain ND446_13560 PF00149 Calcineurin-like phosphoesterase ND446_13570 PF00186 Dihydrofolate reductase ND446_13575 PF12821 Threonine/Serine exporter, ThrE ND446_13580 PF06738 Putative threonine/serine exporter ND446_13585 PF01810 LysE type translocator ND446_13590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND446_13590 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ND446_13590 PF02142 MGS-like domain ND446_13595 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ND446_13595 PF00117 Glutamine amidotransferase class-I ND446_13600 PF05173 Dihydrodipicolinate reductase, C-terminus ND446_13600 PF01113 Dihydrodipicolinate reductase, N-terminus ND446_13605 PF02401 LytB protein ND446_13610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND446_13615 PF01252 Signal peptidase (SPase) II ND446_13620 PF08264 Anticodon-binding domain of tRNA ND446_13620 PF00133 tRNA synthetases class I (I, L, M and V) ND446_13620 PF06827 Zinc finger found in FPG and IleRS ND446_13625 PF06574 FAD synthetase ND446_13625 PF01687 Riboflavin kinase ND446_13630 PF01649 Ribosomal protein S20 ND446_13635 PF03466 LysR substrate binding domain ND446_13635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_13640 PF06965 Na+/H+ antiporter 1 ND446_13645 PF01556 DnaJ C terminal domain ND446_13645 PF00226 DnaJ domain ND446_13645 PF00684 DnaJ central domain ND446_13650 PF00012 Hsp70 protein ND446_13655 PF01184 GPR1/FUN34/yaaH family ND446_13670 PF00994 Probable molybdopterin binding domain ND446_13675 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND446_13680 PF03883 Peroxide stress protein YaaA ND446_13685 PF00291 Pyridoxal-phosphate dependent enzyme ND446_13685 PF14821 Threonine synthase N terminus ND446_13690 PF08544 GHMP kinases C terminal ND446_13690 PF00288 GHMP kinases N terminal domain ND446_13695 PF03447 Homoserine dehydrogenase, NAD binding domain ND446_13695 PF13840 ACT domain ND446_13695 PF00696 Amino acid kinase family ND446_13695 PF00742 Homoserine dehydrogenase ND446_13695 PF01842 ACT domain ND446_13700 PF08254 Threonine leader peptide ND446_13710 PF00072 Response regulator receiver domain ND446_13710 PF00486 Transcriptional regulatory protein, C terminal ND446_13715 PF05981 CreA protein ND446_13720 PF06445 GyrI-like small molecule binding domain ND446_13720 PF12833 Helix-turn-helix domain ND446_13725 PF00300 Histidine phosphatase superfamily (branch 1) ND446_13730 PF01931 Protein of unknown function DUF84 ND446_13735 PF01371 Trp repressor protein ND446_13740 PF01464 Transglycosylase SLT domain ND446_13740 PF14718 Soluble lytic murein transglycosylase L domain ND446_13745 PF00690 Cation transporter/ATPase, N-terminus ND446_13745 PF00689 Cation transporting ATPase, C-terminus ND446_13760 PF12848 ABC transporter ND446_13760 PF00005 ABC transporter ND446_13765 PF01381 Helix-turn-helix ND446_13765 PF13521 AAA domain ND446_13770 PF18073 Rubredoxin metal binding domain ND446_13775 PF18429 Domain of unknown function (DUF5609) ND446_13780 PF10144 Bacterial virulence factor haemolysin ND446_13785 PF01048 Phosphorylase superfamily ND446_13790 PF01676 Metalloenzyme superfamily ND446_13795 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ND446_13795 PF00591 Glycosyl transferase family, a/b domain ND446_13795 PF02885 Glycosyl transferase family, helical bundle domain ND446_13800 PF01791 DeoC/LacD family aldolase ND446_13805 PF01773 Na+ dependent nucleoside transporter N-terminus ND446_13805 PF07662 Na+ dependent nucleoside transporter C-terminus ND446_13805 PF07670 Nucleoside recognition ND446_13810 PF01026 TatD related DNase ND446_13815 PF01734 Patatin-like phospholipase ND446_13820 PF07043 Protein of unknown function (DUF1328) ND446_13825 PF04972 BON domain ND446_13830 PF00009 Elongation factor Tu GTP binding domain ND446_13830 PF16658 Class II release factor RF3, C-terminal domain ND446_13830 PF03144 Elongation factor Tu domain 2 ND446_13835 PF00583 Acetyltransferase (GNAT) family ND446_13840 PF03603 DNA polymerase III psi subunit ND446_13845 PF08468 Methyltransferase small domain N-terminal ND446_13845 PF05175 Methyltransferase small domain ND446_13865 PF07256 Protein of unknown function (DUF1435) ND446_13870 PF00990 Diguanylate cyclase, GGDEF domain ND446_13875 PF00158 Sigma-54 interaction domain ND446_13875 PF00989 PAS fold ND446_13875 PF02954 Bacterial regulatory protein, Fis family ND446_13880 PF00381 PTS HPr component phosphorylation site ND446_13880 PF00391 PEP-utilising enzyme, mobile domain ND446_13880 PF05524 PEP-utilising enzyme, N-terminal ND446_13880 PF03610 PTS system fructose IIA component ND446_13885 PF02734 DAK2 domain ND446_13890 PF02733 Dak1 domain ND446_13895 PF00465 Iron-containing alcohol dehydrogenase ND446_13900 PF00873 AcrB/AcrD/AcrF family ND446_13905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND446_13920 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND446_13925 PF10696 Protein of unknown function (DUF2501) ND446_13935 PF01116 Fructose-bisphosphate aldolase class-II ND446_13945 PF00884 Sulfatase ND446_13950 PF13186 Iron-sulfur cluster-binding domain ND446_13950 PF04055 Radical SAM superfamily ND446_13955 PF07470 Glycosyl Hydrolase Family 88 ND446_13965 PF04962 KduI/IolB family ND446_13970 PF01979 Amidohydrolase family ND446_13980 PF03613 PTS system mannose/fructose/sorbose family IID component ND446_13985 PF03609 PTS system sorbose-specific iic component ND446_13990 PF03830 PTS system sorbose subfamily IIB component ND446_13995 PF01380 SIS domain ND446_14000 PF08013 Tagatose 6 phosphate kinase ND446_14005 PF08220 DeoR-like helix-turn-helix domain ND446_14005 PF00455 DeoR C terminal sensor domain ND446_14010 PF00884 Sulfatase ND446_14015 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND446_14015 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND446_14015 PF09093 Lyase, catalytic ND446_14015 PF09092 Lyase, N terminal ND446_14030 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND446_14030 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND446_14030 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain ND446_14035 PF06178 Oligogalacturonate-specific porin protein (KdgM) ND446_14040 PF01344 Kelch motif ND446_14115 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ND446_14120 PF04221 RelB antitoxin ND446_14145 PF03739 Lipopolysaccharide export system permease LptF/LptG ND446_14150 PF03739 Lipopolysaccharide export system permease LptF/LptG ND446_14155 PF02789 Cytosol aminopeptidase family, N-terminal domain ND446_14155 PF00883 Cytosol aminopeptidase family, catalytic domain ND446_14160 PF04364 DNA polymerase III chi subunit, HolC ND446_14165 PF10458 Valyl tRNA synthetase tRNA binding arm ND446_14165 PF00133 tRNA synthetases class I (I, L, M and V) ND446_14165 PF08264 Anticodon-binding domain of tRNA ND446_14170 PF00583 Acetyltransferase (GNAT) family ND446_14175 PF06877 Regulator of ribonuclease activity B ND446_14180 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND446_14180 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND446_14185 PF13597 Anaerobic ribonucleoside-triphosphate reductase ND446_14185 PF03477 ATP cone domain ND446_14195 PF06754 Phosphonate metabolism protein PhnG ND446_14200 PF05845 Bacterial phosphonate metabolism protein (PhnH) ND446_14205 PF05861 Bacterial phosphonate metabolism protein (PhnI) ND446_14210 PF06007 Phosphonate metabolism protein PhnJ ND446_14215 PF00005 ABC transporter ND446_14220 PF00005 ABC transporter ND446_14225 PF07969 Amidohydrolase family ND446_14235 PF12706 Beta-lactamase superfamily domain ND446_14240 PF13460 NAD(P)H-binding ND446_14250 PF10940 Protein of unknown function (DUF2618) ND446_14255 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND446_14255 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND446_14255 PF01276 Orn/Lys/Arg decarboxylase, major domain ND446_14260 PF13520 Amino acid permease ND446_14265 PF01541 GIY-YIG catalytic domain ND446_14270 PF13508 Acetyltransferase (GNAT) domain ND446_14275 PF02036 SCP-2 sterol transfer family ND446_14280 PF01136 Peptidase family U32 ND446_14285 PF01136 Peptidase family U32 ND446_14290 PF03313 Serine dehydratase alpha chain ND446_14300 PF00296 Luciferase-like monooxygenase ND446_14305 PF12343 Cold shock protein DEAD box A ND446_14305 PF00271 Helicase conserved C-terminal domain ND446_14305 PF00270 DEAD/DEAH box helicase ND446_14305 PF03880 DbpA RNA binding domain ND446_14310 PF07719 Tetratricopeptide repeat ND446_14310 PF13181 Tetratricopeptide repeat ND446_14315 PF00013 KH domain ND446_14315 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ND446_14315 PF01138 3' exoribonuclease family, domain 1 ND446_14315 PF03725 3' exoribonuclease family, domain 2 ND446_14315 PF00575 S1 RNA binding domain ND446_14320 PF00312 Ribosomal protein S15 ND446_14325 PF09157 Pseudouridine synthase II TruB, C-terminal ND446_14325 PF16198 tRNA pseudouridylate synthase B C-terminal domain ND446_14325 PF01509 TruB family pseudouridylate synthase (N terminal domain) ND446_14330 PF02033 Ribosome-binding factor A ND446_14335 PF00009 Elongation factor Tu GTP binding domain ND446_14335 PF03144 Elongation factor Tu domain 2 ND446_14335 PF11987 Translation-initiation factor 2 ND446_14335 PF08364 Bacterial translation initiation factor IF-2 associated region ND446_14335 PF04760 Translation initiation factor IF-2, N-terminal region ND446_14340 PF08529 NusA N-terminal domain ND446_14340 PF00575 S1 RNA binding domain ND446_14340 PF13184 NusA-like KH domain ND446_14345 PF17384 RimP C-terminal SH3 domain ND446_14345 PF02576 RimP N-terminal domain ND446_14360 PF03840 Preprotein translocase SecG subunit ND446_14365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND446_14365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND446_14365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND446_14365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND446_14370 PF00809 Pterin binding enzyme ND446_14375 PF17862 AAA+ lid domain ND446_14375 PF06480 FtsH Extracellular ND446_14375 PF01434 Peptidase family M41 ND446_14375 PF00004 ATPase family associated with various cellular activities (AAA) ND446_14380 PF01728 FtsJ-like methyltransferase ND446_14385 PF01985 CRS1 / YhbY (CRM) domain ND446_14390 PF01272 Transcription elongation factor, GreA/GreB, C-term ND446_14390 PF03449 Transcription elongation factor, N-terminal ND446_14395 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ND446_14400 PF00072 Response regulator receiver domain ND446_14400 PF00486 Transcriptional regulatory protein, C terminal ND446_14405 PF00672 HAMP domain ND446_14405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_14405 PF00512 His Kinase A (phospho-acceptor) domain ND446_14410 PF01018 GTP1/OBG ND446_14410 PF01926 50S ribosome-binding GTPase ND446_14415 PF00892 EamA-like transporter family ND446_14420 PF01016 Ribosomal L27 protein ND446_14425 PF00829 Ribosomal prokaryotic L21 protein ND446_14430 PF00348 Polyprenyl synthetase ND446_14445 PF13693 Winged helix-turn-helix DNA-binding ND446_14450 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ND446_14450 PF00056 lactate/malate dehydrogenase, NAD binding domain ND446_14455 PF01316 Arginine repressor, DNA binding domain ND446_14455 PF02863 Arginine repressor, C-terminal domain ND446_14460 PF01225 Mur ligase family, catalytic domain ND446_14460 PF02875 Mur ligase family, glutamate ligase domain ND446_14460 PF08245 Mur ligase middle domain ND446_14465 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ND446_14470 PF00719 Inorganic pyrophosphatase ND446_14475 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ND446_14480 PF04357 TamB, inner membrane protein subunit of TAM complex ND446_14485 PF01103 Surface antigen ND446_14485 PF07244 Surface antigen variable number repeat ND446_14485 PF17243 POTRA domain TamA domain 1 ND446_14490 PF01625 Peptide methionine sulfoxide reductase ND446_14495 PF01595 Cyclin M transmembrane N-terminal domain ND446_14495 PF00571 CBS domain ND446_14495 PF03471 Transporter associated domain ND446_14500 PF06526 Protein of unknown function (DUF1107) ND446_14505 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ND446_14510 PF00459 Inositol monophosphatase family ND446_14515 PF02872 5'-nucleotidase, C-terminal domain ND446_14515 PF00149 Calcineurin-like phosphoesterase ND446_14520 PF04405 Domain of Unknown function (DUF542) ND446_14520 PF01814 Hemerythrin HHE cation binding domain ND446_14525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND446_14525 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND446_14530 PF08525 Opacity-associated protein A N-terminal motif ND446_14530 PF04225 Opacity-associated protein A LysM-like domain ND446_14535 PF03948 Ribosomal protein L9, C-terminal domain ND446_14535 PF01281 Ribosomal protein L9, N-terminal domain ND446_14540 PF01084 Ribosomal protein S18 ND446_14545 PF00436 Single-strand binding protein family ND446_14550 PF01250 Ribosomal protein S6 ND446_14560 PF00326 Prolyl oligopeptidase family ND446_14580 PF00577 Outer membrane usher protein ND446_14580 PF13953 PapC C-terminal domain ND446_14580 PF13954 PapC N-terminal domain ND446_14585 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND446_14605 PF00588 SpoU rRNA Methylase family ND446_14605 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND446_14610 PF08461 Ribonuclease R winged-helix domain ND446_14610 PF08206 Ribonuclease B OB domain ND446_14610 PF00773 RNB domain ND446_14610 PF00575 S1 RNA binding domain ND446_14610 PF17876 Cold shock domain ND446_14615 PF02082 Transcriptional regulator ND446_14620 PF00709 Adenylosuccinate synthetase ND446_14625 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ND446_14630 PF01145 SPFH domain / Band 7 family ND446_14635 PF12221 Bacterial membrane protein N terminal ND446_14635 PF01145 SPFH domain / Band 7 family ND446_14640 PF01926 50S ribosome-binding GTPase ND446_14640 PF16360 GTP-binding GTPase Middle Region ND446_14640 PF13167 GTP-binding GTPase N-terminal ND446_14645 PF17209 Hfq protein ND446_14655 PF01119 DNA mismatch repair protein, C-terminal domain ND446_14655 PF08676 MutL C terminal dimerisation domain ND446_14660 PF01520 N-acetylmuramoyl-L-alanine amidase ND446_14665 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ND446_14670 PF03853 YjeF-related protein N-terminus ND446_14670 PF01256 Carbohydrate kinase ND446_14675 PF08331 Domain of unknown function (DUF1730) ND446_14695 PF00929 Exonuclease ND446_14700 PF03193 RsgA GTPase ND446_14705 PF02666 Phosphatidylserine decarboxylase ND446_14710 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND446_14710 PF12795 Mechanosensitive ion channel porin domain ND446_14710 PF00924 Mechanosensitive ion channel ND446_14715 PF00152 tRNA synthetases class II (D, K and N) ND446_14720 PF02910 Fumarate reductase flavoprotein C-term ND446_14720 PF00890 FAD binding domain ND446_14725 PF13085 2Fe-2S iron-sulfur cluster binding domain ND446_14725 PF13183 4Fe-4S dicluster domain ND446_14730 PF02300 Fumarate reductase subunit C ND446_14735 PF02313 Fumarate reductase subunit D ND446_14740 PF08212 Lipocalin-like domain ND446_14745 PF00893 Small Multidrug Resistance protein ND446_14750 PF00419 Fimbrial protein ND446_14755 PF00577 Outer membrane usher protein ND446_14755 PF13954 PapC N-terminal domain ND446_14755 PF13953 PapC C-terminal domain ND446_14760 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND446_14760 PF02753 Pili assembly chaperone PapD, C-terminal domain ND446_14770 PF00196 Bacterial regulatory proteins, luxR family ND446_14780 PF01132 Elongation factor P (EF-P) OB domain ND446_14780 PF09285 Elongation factor P, C-terminal ND446_14780 PF08207 Elongation factor P (EF-P) KOW-like domain ND446_14785 PF04055 Radical SAM superfamily ND446_14790 PF13698 Domain of unknown function (DUF4156) ND446_14795 PF00118 TCP-1/cpn60 chaperonin family ND446_14800 PF00166 Chaperonin 10 Kd subunit ND446_14805 PF04186 FxsA cytoplasmic membrane protein ND446_14810 PF10415 Fumarase C C-terminus ND446_14810 PF00206 Lyase ND446_14815 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND446_14820 PF03091 CutA1 divalent ion tolerance protein ND446_14825 PF02683 Cytochrome C biogenesis protein transmembrane region ND446_14825 PF11412 Disulphide bond corrector protein DsbC ND446_14840 PF00375 Sodium:dicarboxylate symporter family ND446_14845 PF16177 Acetyl-coenzyme A synthetase N-terminus ND446_14845 PF13193 AMP-binding enzyme C-terminal domain ND446_14845 PF00501 AMP-binding enzyme ND446_14850 PF04341 Protein of unknown function, DUF485 ND446_14855 PF00474 Sodium:solute symporter family ND446_14880 PF12724 Flavodoxin domain ND446_14885 PF02386 Cation transport protein ND446_14890 PF09186 Domain of unknown function (DUF1949) ND446_14890 PF01205 Uncharacterized protein family UPF0029 ND446_14895 PF00557 Metallopeptidase family M24 ND446_14900 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND446_14900 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND446_14900 PF00378 Enoyl-CoA hydratase/isomerase ND446_14905 PF00108 Thiolase, N-terminal domain ND446_14905 PF02803 Thiolase, C-terminal domain ND446_14910 PF00970 Oxidoreductase FAD-binding domain ND446_14910 PF00175 Oxidoreductase NAD-binding domain ND446_14915 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ND446_14925 PF02357 Transcription termination factor nusG ND446_14930 PF00490 Delta-aminolevulinic acid dehydratase ND446_14935 PF01026 TatD related DNase ND446_14940 PF00902 Sec-independent protein translocase protein (TatC) ND446_14950 PF02416 mttA/Hcf106 family ND446_14955 PF03109 ABC1 family ND446_14960 PF02036 SCP-2 sterol transfer family ND446_14965 PF01209 ubiE/COQ5 methyltransferase family ND446_14970 PF02646 RmuC family ND446_14975 PF09335 SNARE associated Golgi protein ND446_14980 PF13722 5TM C-terminal transporter carbon starvation CstA ND446_14980 PF02554 Carbon starvation protein CstA ND446_14990 PF01048 Phosphorylase superfamily ND446_14995 PF01738 Dienelactone hydrolase family ND446_15000 PF01717 Cobalamin-independent synthase, Catalytic domain ND446_15000 PF08267 Cobalamin-independent synthase, N-terminal domain ND446_15005 PF03466 LysR substrate binding domain ND446_15005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_15010 PF00892 EamA-like transporter family ND446_15020 PF03009 Glycerophosphoryl diester phosphodiesterase family ND446_15025 PF00005 ABC transporter ND446_15025 PF17912 MalK OB fold domain ND446_15030 PF00528 Binding-protein-dependent transport system inner membrane component ND446_15035 PF00528 Binding-protein-dependent transport system inner membrane component ND446_15040 PF13416 Bacterial extracellular solute-binding protein ND446_15075 PF00005 ABC transporter ND446_15080 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND446_15080 PF00005 ABC transporter ND446_15085 PF11862 Domain of unknown function (DUF3382) ND446_15085 PF02653 Branched-chain amino acid transport system / permease component ND446_15090 PF02653 Branched-chain amino acid transport system / permease component ND446_15095 PF13458 Periplasmic binding protein ND446_15100 PF12568 Acetyltransferase (GNAT) domain, PanZ ND446_15105 PF02595 Glycerate kinase family ND446_15110 PF02447 GntP family permease ND446_15115 PF13556 PucR C-terminal helix-turn-helix domain ND446_15115 PF05651 Putative sugar diacid recognition ND446_15115 PF17853 GGDEF-like domain ND446_15120 PF04542 Sigma-70 region 2 ND446_15120 PF04545 Sigma-70, region 4 ND446_15120 PF00140 Sigma-70 factor, region 1.2 ND446_15125 PF02687 FtsX-like permease family ND446_15125 PF18075 FtsX extracellular domain ND446_15130 PF00005 ABC transporter ND446_15135 PF02881 SRP54-type protein, helical bundle domain ND446_15135 PF00448 SRP54-type protein, GTPase domain ND446_15135 PF02881 SRP54-type protein, helical bundle domain ND446_15135 PF00448 SRP54-type protein, GTPase domain ND446_15145 PF06611 Protein of unknown function (DUF1145) ND446_15160 PF07947 YhhN family ND446_15165 PF00403 Heavy-metal-associated domain ND446_15170 PF01206 Sulfurtransferase TusA ND446_15175 PF02592 Putative vitamin uptake transporter ND446_15180 PF08786 DcrB ND446_15185 PF13183 4Fe-4S dicluster domain ND446_15185 PF02754 Cysteine-rich domain ND446_15190 PF00890 FAD binding domain ND446_15195 PF04324 BFD-like [2Fe-2S] binding domain ND446_15195 PF01266 FAD dependent oxidoreductase ND446_15205 PF07690 Major Facilitator Superfamily ND446_15210 PF03009 Glycerophosphoryl diester phosphodiesterase family ND446_15220 PF12146 Serine aminopeptidase, S33 ND446_15225 PF01810 LysE type translocator ND446_15230 PF00270 DEAD/DEAH box helicase ND446_15230 PF16124 RecQ zinc-binding ND446_15230 PF09382 RQC domain ND446_15230 PF00271 Helicase conserved C-terminal domain ND446_15230 PF00570 HRDC domain ND446_15235 PF02253 Phospholipase A1 ND446_15240 PF03061 Thioesterase superfamily ND446_15245 PF00892 EamA-like transporter family ND446_15250 PF01544 CorA-like Mg2+ transporter protein ND446_15260 PF09370 Phosphoenolpyruvate hydrolase-like ND446_15275 PF00580 UvrD/REP helicase N-terminal domain ND446_15275 PF13361 UvrD-like helicase C-terminal domain ND446_15280 PF13419 Haloacid dehalogenase-like hydrolase ND446_15285 PF02899 Phage integrase, N-terminal SAM-like domain ND446_15285 PF00589 Phage integrase family ND446_15290 PF04340 Protein of unknown function, DUF484 ND446_15295 PF01678 Diaminopimelate epimerase ND446_15300 PF13627 Prokaryotic lipoprotein-attachment site ND446_15305 PF01491 Frataxin-like domain ND446_15310 PF12633 Adenylate cyclase NT domain ND446_15310 PF01295 Adenylate cyclase, class-I ND446_15315 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ND446_15315 PF03900 Porphobilinogen deaminase, C-terminal domain ND446_15320 PF02602 Uroporphyrinogen-III synthase HemD ND446_15325 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ND446_15330 PF07719 Tetratricopeptide repeat ND446_15330 PF07219 HemY protein N-terminus ND446_15360 PF00324 Amino acid permease ND446_15365 PF03808 Glycosyl transferase WecB/TagA/CpsF family ND446_15370 PF06899 WzyE protein, O-antigen assembly polymerase ND446_15375 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ND446_15380 PF01943 Polysaccharide biosynthesis protein ND446_15385 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND446_15395 PF00483 Nucleotidyl transferase ND446_15400 PF16363 GDP-mannose 4,6 dehydratase ND446_15405 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND446_15405 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND446_15405 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND446_15410 PF02350 UDP-N-acetylglucosamine 2-epimerase ND446_15415 PF02706 Chain length determinant protein ND446_15420 PF00953 Glycosyl transferase family 4 ND446_15425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND446_15425 PF07498 Rho termination factor, N-terminal domain ND446_15425 PF07497 Rho termination factor, RNA-binding domain ND446_15430 PF00085 Thioredoxin ND446_15435 PF00270 DEAD/DEAH box helicase ND446_15435 PF00271 Helicase conserved C-terminal domain ND446_15440 PF02541 Ppx/GppA phosphatase family ND446_15445 PF00580 UvrD/REP helicase N-terminal domain ND446_15445 PF13361 UvrD-like helicase C-terminal domain ND446_15455 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ND446_15455 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ND446_15460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_15460 PF03466 LysR substrate binding domain ND446_15465 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND446_15465 PF18416 N-acetylglucosamine binding protein domain 2 ND446_15470 PF00585 C-terminal regulatory domain of Threonine dehydratase ND446_15470 PF00291 Pyridoxal-phosphate dependent enzyme ND446_15475 PF00920 Dehydratase family ND446_15480 PF01063 Amino-transferase class IV ND446_15490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND446_15490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND446_15490 PF00205 Thiamine pyrophosphate enzyme, central domain ND446_15495 PF08046 IlvGEDA operon leader peptide ND446_15500 PF13335 Magnesium chelatase, subunit ChlI C-terminal ND446_15500 PF01078 Magnesium chelatase, subunit ChlI ND446_15505 PF04219 Protein of unknown function, DUF ND446_15510 PF03466 LysR substrate binding domain ND446_15510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_15565 PF01177 Asp/Glu/Hydantoin racemase ND446_15570 PF00593 TonB dependent receptor ND446_15570 PF07715 TonB-dependent Receptor Plug Domain ND446_15575 PF05958 tRNA (Uracil-5-)-methyltransferase ND446_15580 PF07226 Protein of unknown function (DUF1422) ND446_15585 PF00440 Bacterial regulatory proteins, tetR family ND446_15590 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND446_15590 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND446_15595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_15595 PF03466 LysR substrate binding domain ND446_15600 PF08534 Redoxin ND446_15600 PF00462 Glutaredoxin ND446_15605 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND446_15605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND446_15625 PF00529 HlyD membrane-fusion protein of T1SS ND446_15630 PF00664 ABC transporter transmembrane region ND446_15630 PF00005 ABC transporter ND446_15640 PF00593 TonB dependent receptor ND446_15640 PF07715 TonB-dependent Receptor Plug Domain ND446_15645 PF00206 Lyase ND446_15645 PF14698 Argininosuccinate lyase C-terminal ND446_15650 PF00764 Arginosuccinate synthase ND446_15655 PF00696 Amino acid kinase family ND446_15660 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND446_15660 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND446_15665 PF01546 Peptidase family M20/M25/M40 ND446_15665 PF07687 Peptidase dimerisation domain ND446_15670 PF00311 Phosphoenolpyruvate carboxylase ND446_15685 PF02219 Methylenetetrahydrofolate reductase ND446_15710 PF00696 Amino acid kinase family ND446_15710 PF03447 Homoserine dehydrogenase, NAD binding domain ND446_15710 PF00742 Homoserine dehydrogenase ND446_15715 PF01053 Cys/Met metabolism PLP-dependent enzyme ND446_15720 PF01340 Met Apo-repressor, MetJ ND446_15725 PF01197 Ribosomal protein L31 ND446_15730 PF00270 DEAD/DEAH box helicase ND446_15730 PF00271 Helicase conserved C-terminal domain ND446_15730 PF17764 3′ DNA-binding domain (3′BD) ND446_15730 PF18074 Primosomal protein N C-terminal domain ND446_15730 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ND446_15735 PF00356 Bacterial regulatory proteins, lacI family ND446_15740 PF05036 Sporulation related domain ND446_15745 PF00227 Proteasome subunit ND446_15750 PF10431 C-terminal, D2-small domain, of ClpB protein ND446_15750 PF07724 AAA domain (Cdc48 subfamily) ND446_15750 PF00004 ATPase family associated with various cellular activities (AAA) ND446_15755 PF01040 UbiA prenyltransferase family ND446_15760 PF03737 Aldolase/RraA ND446_15765 PF06005 Cell division protein ZapB ND446_15770 PF00230 Major intrinsic protein ND446_15775 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND446_15775 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND446_15780 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ND446_15785 PF07690 Major Facilitator Superfamily ND446_15790 PF00970 Oxidoreductase FAD-binding domain ND446_15790 PF00175 Oxidoreductase NAD-binding domain ND446_15795 PF05656 Protein of unknown function (DUF805) ND446_15800 PF07305 Protein of unknown function (DUF1454) ND446_15805 PF00121 Triosephosphate isomerase ND446_15815 PF00365 Phosphofructokinase ND446_15820 PF16916 Dimerisation domain of Zinc Transporter ND446_15820 PF01545 Cation efflux family ND446_15825 PF04606 Ogr/Delta-like zinc finger ND446_15870 PF03406 Phage tail fibre repeat ND446_15980 PF13166 AAA domain ND446_15985 PF05840 Bacteriophage replication gene A protein (GPA) ND446_16040 PF01381 Helix-turn-helix ND446_16045 PF02899 Phage integrase, N-terminal SAM-like domain ND446_16045 PF00589 Phage integrase family ND446_16050 PF07813 LTXXQ motif family protein ND446_16055 PF00486 Transcriptional regulatory protein, C terminal ND446_16055 PF00072 Response regulator receiver domain ND446_16060 PF00512 His Kinase A (phospho-acceptor) domain ND446_16060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_16060 PF00672 HAMP domain ND446_16060 PF16527 Two-component sensor protein CpxA, periplasmic domain ND446_16065 PF00588 SpoU rRNA Methylase family ND446_16070 PF00132 Bacterial transferase hexapeptide (six repeats) ND446_16070 PF06426 Serine acetyltransferase, N-terminal ND446_16075 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ND446_16075 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ND446_16080 PF02556 Preprotein translocase subunit SecB ND446_16085 PF00462 Glutaredoxin ND446_16090 PF00581 Rhodanese-like domain ND446_16095 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ND446_16095 PF01676 Metalloenzyme superfamily ND446_16100 PF01551 Peptidase family M23 ND446_16105 PF04748 Divergent polysaccharide deacetylase ND446_16110 PF00107 Zinc-binding dehydrogenase ND446_16110 PF08240 Alcohol dehydrogenase GroES-like domain ND446_16115 PF00155 Aminotransferase class I and II ND446_16120 PF01370 NAD dependent epimerase/dehydratase family ND446_16125 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND446_16130 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND446_16135 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ND446_16140 PF00535 Glycosyl transferase family 2 ND446_16145 PF01467 Cytidylyltransferase-like ND446_16150 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ND446_16150 PF06827 Zinc finger found in FPG and IleRS ND446_16150 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ND446_16155 PF00471 Ribosomal protein L33 ND446_16160 PF00830 Ribosomal L28 family ND446_16165 PF04002 RadC-like JAB domain ND446_16170 PF02441 Flavoprotein ND446_16170 PF04127 DNA / pantothenate metabolism flavoprotein ND446_16175 PF00692 dUTPase ND446_16180 PF00440 Bacterial regulatory proteins, tetR family ND446_16185 PF00156 Phosphoribosyl transferase domain ND446_16190 PF03725 3' exoribonuclease family, domain 2 ND446_16190 PF01138 3' exoribonuclease family, domain 1 ND446_16195 PF08340 Domain of unknown function (DUF1732) ND446_16195 PF03755 YicC-like family, N-terminal region ND446_16230 PF03466 LysR substrate binding domain ND446_16230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND446_16235 PF13426 PAS domain ND446_16235 PF00990 Diguanylate cyclase, GGDEF domain ND446_16235 PF00563 EAL domain ND446_16240 PF00378 Enoyl-CoA hydratase/isomerase ND446_16245 PF07662 Na+ dependent nucleoside transporter C-terminus ND446_16245 PF01773 Na+ dependent nucleoside transporter N-terminus ND446_16245 PF07670 Nucleoside recognition ND446_16265 PF03458 UPF0126 domain ND446_16270 PF03120 NAD-dependent DNA ligase OB-fold domain ND446_16270 PF01653 NAD-dependent DNA ligase adenylation domain ND446_16275 PF00625 Guanylate kinase ND446_16280 PF01192 RNA polymerase Rpb6 ND446_16285 PF02824 TGS domain ND446_16285 PF04607 Region found in RelA / SpoT proteins ND446_16285 PF13291 ACT domain ND446_16290 PF00588 SpoU rRNA Methylase family ND446_16290 PF12105 SpoU, rRNA methylase, C-terminal ND446_16295 PF17191 RecG wedge domain ND446_16295 PF00270 DEAD/DEAH box helicase ND446_16295 PF00271 Helicase conserved C-terminal domain ND446_16300 PF03616 Sodium/glutamate symporter ND446_16305 PF00860 Permease family ND446_16310 PF05170 AsmA family ND446_16315 PF09500 Putative thioesterase (yiiD_Cterm) ND446_16315 PF00583 Acetyltransferase (GNAT) family ND446_16320 PF02580 D-Tyr-tRNA(Tyr) deacylase ND446_16325 PF03631 Virulence factor BrkB ND446_16330 PF13419 Haloacid dehalogenase-like hydrolase ND446_16335 PF00009 Elongation factor Tu GTP binding domain ND446_16335 PF00679 Elongation factor G C-terminus ND446_16335 PF03144 Elongation factor Tu domain 2 ND446_16340 PF00120 Glutamine synthetase, catalytic domain ND446_16340 PF03951 Glutamine synthetase, beta-Grasp domain ND446_16345 PF00989 PAS fold ND446_16345 PF00512 His Kinase A (phospho-acceptor) domain ND446_16345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND446_16350 PF00072 Response regulator receiver domain ND446_16350 PF02954 Bacterial regulatory protein, Fis family ND446_16350 PF00158 Sigma-54 interaction domain ND446_16355 PF06969 HemN C-terminal domain ND446_16355 PF04055 Radical SAM superfamily ND446_16360 PF04220 Der GTPase activator (YihI) ND446_16365 PF01926 50S ribosome-binding GTPase ND446_16370 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND446_16370 PF00476 DNA polymerase family A ND446_16370 PF01367 5'-3' exonuclease, C-terminal SAM fold ND446_16370 PF01612 3'-5' exonuclease ND446_16375 PF01323 DSBA-like thioredoxin domain ND446_16380 PF01636 Phosphotransferase enzyme family ND446_16385 PF06288 Protein of unknown function (DUF1040) ND446_16390 PF12804 MobA-like NTP transferase domain ND446_16395 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ND446_16420 PF07729 FCD domain ND446_16420 PF00392 Bacterial regulatory proteins, gntR family ND446_16425 PF00356 Bacterial regulatory proteins, lacI family ND446_16430 PF00294 pfkB family carbohydrate kinase ND446_16435 PF13407 Periplasmic binding protein domain ND446_16440 PF02653 Branched-chain amino acid transport system / permease component ND446_16445 PF00005 ABC transporter ND446_16450 PF05025 RbsD / FucU transport protein family ND446_16455 PF02705 K+ potassium transporter ND446_16460 PF12592 Protein of unknown function (DUF3763) ND446_16460 PF17868 AAA lid domain ND446_16460 PF07728 AAA domain (dynein-related subfamily) ND446_16465 PF05762 VWA domain containing CoxE-like protein ND446_16475 PF03590 Aspartate-ammonia ligase ND446_16480 PF01037 Lrp/AsnC ligand binding domain ND446_16485 PF00258 Flavodoxin ND446_16490 PF01134 Glucose inhibited division protein A ND446_16490 PF13932 GidA associated domain ND446_16495 PF02527 rRNA small subunit methyltransferase G ND446_16500 PF03899 ATP synthase I chain ND446_16505 PF00119 ATP synthase A chain ND446_16510 PF00137 ATP synthase subunit C ND446_16515 PF00430 ATP synthase B/B' CF(0) ND446_16520 PF00213 ATP synthase delta (OSCP) subunit ND446_16525 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND446_16525 PF00306 ATP synthase alpha/beta chain, C terminal domain ND446_16525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND446_16530 PF00231 ATP synthase ND446_16535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND446_16535 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND446_16540 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ND446_16540 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ND446_16545 PF12804 MobA-like NTP transferase domain ND446_16545 PF00132 Bacterial transferase hexapeptide (six repeats) ND446_16550 PF01380 SIS domain ND446_16555 PF12849 PBP superfamily domain ND446_16560 PF00528 Binding-protein-dependent transport system inner membrane component ND446_16565 PF00528 Binding-protein-dependent transport system inner membrane component ND446_16570 PF00005 ABC transporter ND446_16575 PF01895 PhoU domain ND446_16580 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND446_16585 PF00528 Binding-protein-dependent transport system inner membrane component ND446_16590 PF00528 Binding-protein-dependent transport system inner membrane component ND446_16595 PF00860 Permease family ND446_16600 PF00672 HAMP domain ND446_16600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND446_16600 PF02203 Tar ligand binding domain homologue ND446_16610 PF02753 Pili assembly chaperone PapD, C-terminal domain ND446_16610 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND446_16615 PF00577 Outer membrane usher protein ND446_16615 PF13954 PapC N-terminal domain ND446_16615 PF13953 PapC C-terminal domain ND446_16630 PF01926 50S ribosome-binding GTPase ND446_16630 PF12631 MnmE helical domain ND446_16630 PF10396 GTP-binding protein TrmE N-terminus ND446_16635 PF02096 60Kd inner membrane protein ND446_16635 PF14849 YidC periplasmic domain ND446_16640 PF01809 Putative membrane protein insertion efficiency factor ND446_16645 PF00825 Ribonuclease P ND446_16650 PF00468 Ribosomal protein L34