locus-tag class description QMA0440_00001 PF00308 Bacterial dnaA protein QMA0440_00001 PF08299 Bacterial dnaA protein helix-turn-helix QMA0440_00001 PF11638 DnaA N-terminal domain QMA0440_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain QMA0440_00002 PF02767 DNA polymerase III beta subunit, central domain QMA0440_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain QMA0440_00003 PF02463 RecF/RecN/SMC N terminal domain QMA0440_00004 PF00986 DNA gyrase B subunit, carboxyl terminus QMA0440_00004 PF00204 DNA gyrase B QMA0440_00004 PF18053 DNA gyrase B subunit insert domain QMA0440_00004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_00004 PF01751 Toprim domain QMA0440_00006 PF07676 WD40-like Beta Propeller Repeat QMA0440_00006 PF12566 Protein of unknown function (DUF3748) QMA0440_00007 PF07119 Protein of unknown function (DUF1375) QMA0440_00008 PF00011 Hsp20/alpha crystallin family QMA0440_00009 PF00011 Hsp20/alpha crystallin family QMA0440_00010 PF02080 TrkA-C domain QMA0440_00010 PF06826 Predicted Permease Membrane Region QMA0440_00011 PF00155 Aminotransferase class I and II QMA0440_00012 PF00691 OmpA family QMA0440_00012 PF13488 Glycine zipper QMA0440_00016 PF03352 Methyladenine glycosylase QMA0440_00018 PF02091 Glycyl-tRNA synthetase alpha subunit QMA0440_00019 PF05746 DALR anticodon binding domain QMA0440_00019 PF02092 Glycyl-tRNA synthetase beta subunit QMA0440_00020 PF11254 Protein of unknown function (DUF3053) QMA0440_00026 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 QMA0440_00026 PF02378 Phosphotransferase system, EIIC QMA0440_00026 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit QMA0440_00027 PF08125 Mannitol dehydrogenase C-terminal domain QMA0440_00027 PF01232 Mannitol dehydrogenase Rossmann domain QMA0440_00028 PF05068 Mannitol repressor QMA0440_00029 PF10928 Protein of unknown function (DUF2810) QMA0440_00030 PF03473 MOSC domain QMA0440_00030 PF03475 3-alpha domain QMA0440_00031 PF02203 Tar ligand binding domain homologue QMA0440_00031 PF00672 HAMP domain QMA0440_00031 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain QMA0440_00033 PF02777 Iron/manganese superoxide dismutases, C-terminal domain QMA0440_00033 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain QMA0440_00034 PF02634 FdhD/NarQ family QMA0440_00035 PF01568 Molydopterin dinucleotide binding domain QMA0440_00035 PF00384 Molybdopterin oxidoreductase QMA0440_00035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain QMA0440_00036 PF01568 Molydopterin dinucleotide binding domain QMA0440_00036 PF00384 Molybdopterin oxidoreductase QMA0440_00036 PF04879 Molybdopterin oxidoreductase Fe4S4 domain QMA0440_00037 PF13247 4Fe-4S dicluster domain QMA0440_00037 PF09163 Formate dehydrogenase N, transmembrane QMA0440_00038 PF01292 Prokaryotic cytochrome b561 QMA0440_00039 PF04216 Protein involved in formate dehydrogenase formation QMA0440_00040 PF03841 L-seryl-tRNA selenium transferase QMA0440_00040 PF12390 Selenocysteine synthase N terminal QMA0440_00041 PF09107 Elongation factor SelB, winged helix QMA0440_00041 PF09106 Elongation factor SelB, winged helix QMA0440_00041 PF03144 Elongation factor Tu domain 2 QMA0440_00041 PF00009 Elongation factor Tu GTP binding domain QMA0440_00042 PF01427 D-ala-D-ala dipeptidase QMA0440_00043 PF07690 Major Facilitator Superfamily QMA0440_00044 PF01757 Acyltransferase family QMA0440_00046 PF00589 Phage integrase family QMA0440_00046 PF13356 Arm DNA-binding domain QMA0440_00047 PF13276 HTH-like domain QMA0440_00047 PF00665 Integrase core domain QMA0440_00047 PF13333 Integrase core domain QMA0440_00048 PF01527 Transposase QMA0440_00052 PF01175 Urocanase Rossmann-like domain QMA0440_00052 PF17392 Urocanase C-terminal domain QMA0440_00052 PF17391 Urocanase N-terminal domain QMA0440_00053 PF00221 Aromatic amino acid lyase QMA0440_00054 PF00324 Amino acid permease QMA0440_00056 PF12146 Serine aminopeptidase, S33 QMA0440_00057 PF08019 Phosphoethanolamine transferase EptA/EptB QMA0440_00057 PF00884 Sulfatase QMA0440_00058 PF00072 Response regulator receiver domain QMA0440_00058 PF00196 Bacterial regulatory proteins, luxR family QMA0440_00059 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_00059 PF05231 MASE1 QMA0440_00059 PF07730 Histidine kinase QMA0440_00060 PF07690 Major Facilitator Superfamily QMA0440_00062 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle QMA0440_00063 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_00064 PF12911 N-terminal TM domain of oligopeptide transport permease C QMA0440_00064 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_00065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region QMA0440_00065 PF00005 ABC transporter QMA0440_00066 PF00005 ABC transporter QMA0440_00066 PF08352 Oligopeptide/dipeptide transporter, C-terminal region QMA0440_00067 PF11658 Cellulose biosynthesis protein BcsG QMA0440_00068 PF11120 Cellulose biosynthesis protein BcsF QMA0440_00069 PF10995 Cellulose biosynthesis GIL QMA0440_00071 PF06564 Cellulose biosynthesis protein BcsQ QMA0440_00072 PF00535 Glycosyl transferase family 2 QMA0440_00072 PF07238 PilZ domain QMA0440_00073 PF03170 Bacterial cellulose synthase subunit QMA0440_00074 PF01270 Glycosyl hydrolases family 8 QMA0440_00075 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) QMA0440_00076 PF00563 EAL domain QMA0440_00076 PF00672 HAMP domain QMA0440_00076 PF00990 Diguanylate cyclase, GGDEF domain QMA0440_00076 PF17154 Gammaproteobacterial periplasmic sensor domain QMA0440_00077 PF00375 Sodium:dicarboxylate symporter family QMA0440_00078 PF05193 Peptidase M16 inactive domain QMA0440_00078 PF00675 Insulinase (Peptidase family M16) QMA0440_00079 PF00294 pfkB family carbohydrate kinase QMA0440_00080 PF01361 Tautomerase enzyme QMA0440_00081 PF00563 EAL domain QMA0440_00082 PF02611 CDP-diacylglycerol pyrophosphatase QMA0440_00083 PF03631 Virulence factor BrkB QMA0440_00084 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00084 PF03466 LysR substrate binding domain QMA0440_00085 PF00375 Sodium:dicarboxylate symporter family QMA0440_00086 PF01053 Cys/Met metabolism PLP-dependent enzyme QMA0440_00087 PF07992 Pyridine nucleotide-disulphide oxidoreductase QMA0440_00087 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain QMA0440_00088 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ QMA0440_00089 PF01432 Peptidase family M3 QMA0440_00090 PF04445 Putative SAM-dependent methyltransferase QMA0440_00091 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain QMA0440_00091 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase QMA0440_00092 PF00582 Universal stress protein family QMA0440_00093 PF10625 Universal stress protein B (UspB) QMA0440_00094 PF01384 Phosphate transporter family QMA0440_00096 PF01810 LysE type translocator QMA0440_00097 PF00583 Acetyltransferase (GNAT) family QMA0440_00099 PF17954 Quercetinase C-terminal cupin domain QMA0440_00099 PF02678 Pirin QMA0440_00100 PF00356 Bacterial regulatory proteins, lacI family QMA0440_00100 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family QMA0440_00101 PF02447 GntP family permease QMA0440_00102 PF01202 Shikimate kinase QMA0440_00103 PF01914 MarC family integral membrane protein QMA0440_00104 PF01118 Semialdehyde dehydrogenase, NAD binding domain QMA0440_00104 PF02774 Semialdehyde dehydrogenase, dimerisation domain QMA0440_00105 PF06580 Histidine kinase QMA0440_00105 PF07694 5TMR of 5TMR-LYT QMA0440_00106 PF02806 Alpha amylase, C-terminal all-beta domain QMA0440_00106 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) QMA0440_00106 PF00128 Alpha amylase, catalytic domain QMA0440_00107 PF18390 Glycogen debranching enzyme C-terminal domain QMA0440_00107 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) QMA0440_00107 PF00128 Alpha amylase, catalytic domain QMA0440_00108 PF00483 Nucleotidyl transferase QMA0440_00109 PF00534 Glycosyl transferases group 1 QMA0440_00109 PF08323 Starch synthase catalytic domain QMA0440_00110 PF00343 Carbohydrate phosphorylase QMA0440_00111 PF16901 C-terminal domain of alpha-glycerophosphate oxidase QMA0440_00111 PF01266 FAD dependent oxidoreductase QMA0440_00112 PF00455 DeoR C terminal sensor domain QMA0440_00112 PF08220 DeoR-like helix-turn-helix domain QMA0440_00113 PF01694 Rhomboid family QMA0440_00113 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease QMA0440_00114 PF00581 Rhodanese-like domain QMA0440_00115 PF00196 Bacterial regulatory proteins, luxR family QMA0440_00115 PF17874 MalT-like TPR region QMA0440_00116 PF00343 Carbohydrate phosphorylase QMA0440_00117 PF02446 4-alpha-glucanotransferase QMA0440_00118 PF01106 NifU-like domain QMA0440_00118 PF01521 Iron-sulphur cluster biosynthesis QMA0440_00119 PF00156 Phosphoribosyl transferase domain QMA0440_00120 PF00561 alpha/beta hydrolase fold QMA0440_00122 PF09012 FeoC like transcriptional regulator QMA0440_00123 PF02421 Ferrous iron transport protein B QMA0440_00123 PF07670 Nucleoside recognition QMA0440_00123 PF07664 Ferrous iron transport protein B C terminus QMA0440_00123 PF17910 FeoB cytosolic helical domain QMA0440_00124 PF04023 FeoA domain QMA0440_00125 PF09371 Tex-like protein N-terminal domain QMA0440_00125 PF17674 HHH domain QMA0440_00125 PF16921 Tex protein YqgF-like domain QMA0440_00125 PF00575 S1 RNA binding domain QMA0440_00130 PF03449 Transcription elongation factor, N-terminal QMA0440_00130 PF01272 Transcription elongation factor, GreA/GreB, C-term QMA0440_00131 PF00072 Response regulator receiver domain QMA0440_00131 PF00486 Transcriptional regulatory protein, C terminal QMA0440_00132 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_00132 PF00672 HAMP domain QMA0440_00132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_00133 PF01293 Phosphoenolpyruvate carboxykinase QMA0440_00134 PF01430 Hsp33 protein QMA0440_00135 PF01479 S4 domain QMA0440_00136 PF13419 Haloacid dehalogenase-like hydrolase QMA0440_00137 PF07095 Intracellular growth attenuator protein IgaA QMA0440_00138 PF00293 NUDIX domain QMA0440_00139 PF17092 Penicillin-binding protein OB-like domain QMA0440_00139 PF00912 Transglycosylase QMA0440_00139 PF00905 Penicillin binding protein transpeptidase domain QMA0440_00144 PF00263 Bacterial type II and III secretion system protein QMA0440_00144 PF03958 Bacterial type II/III secretion system short domain QMA0440_00145 PF01202 Shikimate kinase QMA0440_00146 PF01761 3-dehydroquinate synthase QMA0440_00147 PF05036 Sporulation related domain QMA0440_00148 PF02086 D12 class N6 adenine-specific DNA methyltransferase QMA0440_00149 PF00834 Ribulose-phosphate 3 epimerase family QMA0440_00150 PF13419 Haloacid dehalogenase-like hydrolase QMA0440_00151 PF00579 tRNA synthetases class I (W and Y) QMA0440_00153 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases QMA0440_00153 PF10414 Sirohaem synthase dimerisation region QMA0440_00153 PF14824 Sirohaem biosynthesis protein central QMA0440_00154 PF01226 Formate/nitrite transporter QMA0440_00155 PF13806 Rieske-like [2Fe-2S] domain QMA0440_00156 PF07992 Pyridine nucleotide-disulphide oxidoreductase QMA0440_00156 PF18267 Rubredoxin NAD+ reductase C-terminal domain QMA0440_00156 PF04324 BFD-like [2Fe-2S] binding domain QMA0440_00156 PF01077 Nitrite and sulphite reductase 4Fe-4S domain QMA0440_00156 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain QMA0440_00157 PF07969 Amidohydrolase family QMA0440_00158 PF07690 Major Facilitator Superfamily QMA0440_00161 PF00356 Bacterial regulatory proteins, lacI family QMA0440_00162 PF02056 Family 4 glycosyl hydrolase QMA0440_00162 PF11975 Family 4 glycosyl hydrolase C-terminal domain QMA0440_00163 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD QMA0440_00164 PF00117 Glutamine amidotransferase class-I QMA0440_00165 PF00202 Aminotransferase class-III QMA0440_00166 PF12805 FUSC-like inner membrane protein yccS QMA0440_00167 PF00027 Cyclic nucleotide-binding domain QMA0440_00167 PF13545 Crp-like helix-turn-helix domain QMA0440_00168 PF02566 OsmC-like protein QMA0440_00169 PF01385 Probable transposase QMA0440_00169 PF07282 Putative transposase DNA-binding domain QMA0440_00169 PF12323 Helix-turn-helix domain QMA0440_00172 PF00156 Phosphoribosyl transferase domain QMA0440_00173 PF00291 Pyridoxal-phosphate dependent enzyme QMA0440_00174 PF00485 Phosphoribulokinase / Uridine kinase family QMA0440_00175 PF06794 Uncharacterised protein family (UPF0270) QMA0440_00176 PF00561 alpha/beta hydrolase fold QMA0440_00177 PF01810 LysE type translocator QMA0440_00178 PF01075 Glycosyltransferase family 9 (heptosyltransferase) QMA0440_00179 PF00535 Glycosyl transferase family 2 QMA0440_00180 PF12848 ABC transporter QMA0440_00180 PF00005 ABC transporter QMA0440_00181 PF02525 Flavodoxin-like fold QMA0440_00182 PF02254 TrkA-N domain QMA0440_00182 PF00999 Sodium/hydrogen exchanger family QMA0440_00183 PF09526 Probable metal-binding protein (DUF2387) QMA0440_00184 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase QMA0440_00185 PF04102 SlyX QMA0440_00186 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase QMA0440_00186 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase QMA0440_00187 PF13309 HTH domain QMA0440_00187 PF08348 YheO-like PAS domain QMA0440_00188 PF02635 DsrE/DsrF-like family QMA0440_00189 PF02635 DsrE/DsrF-like family QMA0440_00190 PF04077 DsrH like protein QMA0440_00191 PF00164 Ribosomal protein S12/S23 QMA0440_00192 PF00177 Ribosomal protein S7p/S5e QMA0440_00193 PF14492 Elongation Factor G, domain II QMA0440_00193 PF03144 Elongation factor Tu domain 2 QMA0440_00193 PF00009 Elongation factor Tu GTP binding domain QMA0440_00193 PF03764 Elongation factor G, domain IV QMA0440_00193 PF00679 Elongation factor G C-terminus QMA0440_00194 PF03144 Elongation factor Tu domain 2 QMA0440_00194 PF03143 Elongation factor Tu C-terminal domain QMA0440_00194 PF00009 Elongation factor Tu GTP binding domain QMA0440_00195 PF04324 BFD-like [2Fe-2S] binding domain QMA0440_00196 PF00210 Ferritin-like domain QMA0440_00197 PF00338 Ribosomal protein S10p/S20e QMA0440_00198 PF00297 Ribosomal protein L3 QMA0440_00199 PF00573 Ribosomal protein L4/L1 family QMA0440_00200 PF00276 Ribosomal protein L23 QMA0440_00201 PF00181 Ribosomal Proteins L2, RNA binding domain QMA0440_00201 PF03947 Ribosomal Proteins L2, C-terminal domain QMA0440_00202 PF00203 Ribosomal protein S19 QMA0440_00203 PF00237 Ribosomal protein L22p/L17e QMA0440_00204 PF07650 KH domain QMA0440_00204 PF00189 Ribosomal protein S3, C-terminal domain QMA0440_00205 PF00252 Ribosomal protein L16p/L10e QMA0440_00206 PF00831 Ribosomal L29 protein QMA0440_00207 PF00366 Ribosomal protein S17 QMA0440_00208 PF00238 Ribosomal protein L14p/L23e QMA0440_00209 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 QMA0440_00209 PF00467 KOW motif QMA0440_00210 PF00281 Ribosomal protein L5 QMA0440_00210 PF00673 ribosomal L5P family C-terminus QMA0440_00211 PF00253 Ribosomal protein S14p/S29e QMA0440_00212 PF00410 Ribosomal protein S8 QMA0440_00213 PF00347 Ribosomal protein L6 QMA0440_00214 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast QMA0440_00215 PF00333 Ribosomal protein S5, N-terminal domain QMA0440_00215 PF03719 Ribosomal protein S5, C-terminal domain QMA0440_00216 PF00327 Ribosomal protein L30p/L7e QMA0440_00217 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A QMA0440_00218 PF00344 SecY translocase QMA0440_00219 PF00444 Ribosomal protein L36 QMA0440_00220 PF00416 Ribosomal protein S13/S18 QMA0440_00221 PF00411 Ribosomal protein S11 QMA0440_00222 PF00163 Ribosomal protein S4/S9 N-terminal domain QMA0440_00222 PF01479 S4 domain QMA0440_00223 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain QMA0440_00223 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain QMA0440_00223 PF01000 RNA polymerase Rpb3/RpoA insert domain QMA0440_00224 PF01196 Ribosomal protein L17 QMA0440_00225 PF13411 MerR HTH family regulatory protein QMA0440_00226 PF03889 Alternative ribosome-rescue factor A QMA0440_00227 PF01741 Large-conductance mechanosensitive channel, MscL QMA0440_00228 PF02080 TrkA-C domain QMA0440_00228 PF02254 TrkA-N domain QMA0440_00229 PF01189 16S rRNA methyltransferase RsmB/F QMA0440_00229 PF01029 NusB family QMA0440_00230 PF00551 Formyl transferase QMA0440_00230 PF02911 Formyl transferase, C-terminal domain QMA0440_00231 PF01327 Polypeptide deformylase QMA0440_00232 PF17782 DprA winged helix domain QMA0440_00232 PF02481 DNA recombination-mediator protein A QMA0440_00233 PF04361 Protein of unknown function (DUF494) QMA0440_00234 PF01396 Topoisomerase DNA binding C4 zinc finger QMA0440_00235 PF01300 Telomere recombination QMA0440_00236 PF18317 Shikimate 5'-dehydrogenase C-terminal domain QMA0440_00236 PF08501 Shikimate dehydrogenase substrate binding domain QMA0440_00236 PF01488 Shikimate / quinate 5-dehydrogenase QMA0440_00237 PF00132 Bacterial transferase hexapeptide (six repeats) QMA0440_00243 PF01565 FAD binding domain QMA0440_00243 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain QMA0440_00244 PF08279 HTH domain QMA0440_00244 PF02237 Biotin protein ligase C terminal domain QMA0440_00244 PF03099 Biotin/lipoate A/B protein ligase family QMA0440_00245 PF00485 Phosphoribulokinase / Uridine kinase family QMA0440_00251 PF03144 Elongation factor Tu domain 2 QMA0440_00251 PF03143 Elongation factor Tu C-terminal domain QMA0440_00251 PF00009 Elongation factor Tu GTP binding domain QMA0440_00252 PF00584 SecE/Sec61-gamma subunits of protein translocation complex QMA0440_00253 PF00467 KOW motif QMA0440_00253 PF02357 Transcription termination factor nusG QMA0440_00254 PF03946 Ribosomal protein L11, N-terminal domain QMA0440_00254 PF00298 Ribosomal protein L11, RNA binding domain QMA0440_00255 PF00687 Ribosomal protein L1p/L10e family QMA0440_00256 PF00466 Ribosomal protein L10 QMA0440_00257 PF16320 Ribosomal protein L7/L12 dimerisation domain QMA0440_00257 PF00542 Ribosomal protein L7/L12 C-terminal domain QMA0440_00258 PF04560 RNA polymerase Rpb2, domain 7 QMA0440_00258 PF00562 RNA polymerase Rpb2, domain 6 QMA0440_00258 PF10385 RNA polymerase beta subunit external 1 domain QMA0440_00258 PF04565 RNA polymerase Rpb2, domain 3 QMA0440_00258 PF04561 RNA polymerase Rpb2, domain 2 QMA0440_00258 PF04563 RNA polymerase beta subunit QMA0440_00259 PF04997 RNA polymerase Rpb1, domain 1 QMA0440_00259 PF04998 RNA polymerase Rpb1, domain 5 QMA0440_00259 PF05000 RNA polymerase Rpb1, domain 4 QMA0440_00259 PF00623 RNA polymerase Rpb1, domain 2 QMA0440_00259 PF04983 RNA polymerase Rpb1, domain 3 QMA0440_00260 PF06968 Biotin and Thiamin Synthesis associated domain QMA0440_00260 PF04055 Radical SAM superfamily QMA0440_00261 PF05690 Thiazole biosynthesis protein ThiG QMA0440_00262 PF02597 ThiS family QMA0440_00263 PF00899 ThiF family QMA0440_00264 PF02581 Thiamine monophosphate synthase QMA0440_00265 PF01964 Radical SAM ThiC family QMA0440_00265 PF13667 ThiC-associated domain QMA0440_00266 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ QMA0440_00267 PF00293 NUDIX domain QMA0440_00267 PF09297 NADH pyrophosphatase zinc ribbon domain QMA0440_00268 PF01208 Uroporphyrinogen decarboxylase (URO-D) QMA0440_00269 PF04493 Endonuclease V QMA0440_00270 PF04222 Protein of unknown function (DUF416) QMA0440_00271 PF00216 Bacterial DNA-binding protein QMA0440_00272 PF07356 Protein of unknown function (DUF1481) QMA0440_00273 PF02843 Phosphoribosylglycinamide synthetase, C domain QMA0440_00273 PF02844 Phosphoribosylglycinamide synthetase, N domain QMA0440_00273 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain QMA0440_00274 PF01808 AICARFT/IMPCHase bienzyme QMA0440_00274 PF02142 MGS-like domain QMA0440_00282 PF04204 Homoserine O-succinyltransferase QMA0440_00283 PF01274 Malate synthase QMA0440_00284 PF00463 Isocitrate lyase family QMA0440_00285 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) QMA0440_00286 PF01614 Bacterial transcriptional regulator QMA0440_00286 PF09339 IclR helix-turn-helix domain QMA0440_00287 PF02607 B12 binding domain QMA0440_00287 PF02965 Vitamin B12 dependent methionine synthase, activation domain QMA0440_00287 PF00809 Pterin binding enzyme QMA0440_00287 PF02574 Homocysteine S-methyltransferase QMA0440_00287 PF02310 B12 binding domain QMA0440_00305 PF00004 ATPase family associated with various cellular activities (AAA) QMA0440_00305 PF16450 Proteasomal ATPase OB C-terminal domain QMA0440_00305 PF17758 Proteasomal ATPase OB N-terminal domain QMA0440_00307 PF04488 Glycosyltransferase sugar-binding region containing DXD motif QMA0440_00309 PF11924 Inverse autotransporter, beta-domain QMA0440_00309 PF02369 Bacterial Ig-like domain (group 1) QMA0440_00309 PF07979 Intimin C-type lectin domain QMA0440_00309 PF09134 Invasin, domain 3 QMA0440_00310 PF00872 Transposase, Mutator family QMA0440_00311 PF13332 Hemagglutinin repeat QMA0440_00311 PF05860 haemagglutination activity domain QMA0440_00312 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB QMA0440_00312 PF08479 POTRA domain, ShlB-type QMA0440_00312 PF17287 POTRA domain QMA0440_00314 PF01842 ACT domain QMA0440_00314 PF00696 Amino acid kinase family QMA0440_00315 PF00342 Phosphoglucose isomerase QMA0440_00316 PF06146 Phosphate-starvation-inducible E QMA0440_00317 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_00318 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_00318 PF14785 Maltose transport system permease protein MalF P2 domain QMA0440_00319 PF01547 Bacterial extracellular solute-binding protein QMA0440_00322 PF17912 MalK OB fold domain QMA0440_00322 PF00005 ABC transporter QMA0440_00323 PF02264 LamB porin QMA0440_00324 PF07148 Maltose operon periplasmic protein precursor (MalM) QMA0440_00325 PF04345 Chorismate lyase QMA0440_00326 PF01040 UbiA prenyltransferase family QMA0440_00327 PF01553 Acyltransferase QMA0440_00328 PF01219 Prokaryotic diacylglycerol kinase QMA0440_00329 PF01726 LexA DNA binding domain QMA0440_00329 PF00717 Peptidase S24-like QMA0440_00330 PF01475 Ferric uptake regulator family QMA0440_00331 PF01207 Dihydrouridine synthase (Dus) QMA0440_00332 PF09583 Phage shock protein G (Phageshock_PspG) QMA0440_00333 PF00107 Zinc-binding dehydrogenase QMA0440_00333 PF08240 Alcohol dehydrogenase GroES-like domain QMA0440_00334 PF03796 DnaB-like helicase C terminal domain QMA0440_00334 PF00772 DnaB-like helicase N terminal domain QMA0440_00335 PF01168 Alanine racemase, N-terminal domain QMA0440_00335 PF00842 Alanine racemase, C-terminal domain QMA0440_00336 PF00155 Aminotransferase class I and II QMA0440_00337 PF04237 YjbR QMA0440_00338 PF17755 UvrA DNA-binding domain QMA0440_00338 PF00005 ABC transporter QMA0440_00338 PF17760 UvrA interaction domain QMA0440_00339 PF00436 Single-strand binding protein family QMA0440_00341 PF00860 Permease family QMA0440_00342 PF00999 Sodium/hydrogen exchanger family QMA0440_00343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00343 PF03466 LysR substrate binding domain QMA0440_00344 PF03788 LrgA family QMA0440_00345 PF04172 LrgB-like family QMA0440_00346 PF00484 Carbonic anhydrase QMA0440_00347 PF03279 Bacterial lipid A biosynthesis acyltransferase QMA0440_00349 PF02954 Bacterial regulatory protein, Fis family QMA0440_00350 PF01207 Dihydrouridine synthase (Dus) QMA0440_00353 PF00474 Sodium:solute symporter family QMA0440_00354 PF06196 Protein of unknown function (DUF997) QMA0440_00355 PF02785 Biotin carboxylase C-terminal domain QMA0440_00355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain QMA0440_00355 PF00289 Biotin carboxylase, N-terminal domain QMA0440_00356 PF00364 Biotin-requiring enzyme QMA0440_00357 PF01220 Dehydroquinase class II QMA0440_00358 PF01794 Ferric reductase like transmembrane component QMA0440_00359 PF00174 Oxidoreductase molybdopterin binding domain QMA0440_00360 PF00107 Zinc-binding dehydrogenase QMA0440_00360 PF08240 Alcohol dehydrogenase GroES-like domain QMA0440_00361 PF00990 Diguanylate cyclase, GGDEF domain QMA0440_00361 PF17157 Gammaproteobacterial periplasmic sensor domain QMA0440_00361 PF00563 EAL domain QMA0440_00363 PF04085 rod shape-determining protein MreC QMA0440_00364 PF04093 rod shape-determining protein MreD QMA0440_00365 PF02545 Maf-like protein QMA0440_00366 PF10150 Ribonuclease E/G family QMA0440_00366 PF00575 S1 RNA binding domain QMA0440_00367 PF13502 AsmA-like C-terminal region QMA0440_00367 PF13116 Protein of unknown function QMA0440_00368 PF00795 Carbon-nitrogen hydrolase QMA0440_00369 PF01523 Putative modulator of DNA gyrase QMA0440_00370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00370 PF03466 LysR substrate binding domain QMA0440_00371 PF07869 Protein of unknown function (DUF1656) QMA0440_00372 PF13533 Biotin-lipoyl like QMA0440_00373 PF04632 Fusaric acid resistance protein family QMA0440_00374 PF00171 Aldehyde dehydrogenase family QMA0440_00375 PF00545 ribonuclease QMA0440_00376 PF01337 Barstar (barnase inhibitor) QMA0440_00377 PF04751 Protein of unknown function (DUF615) QMA0440_00378 PF01523 Putative modulator of DNA gyrase QMA0440_00379 PF07361 Cytochrome b562 QMA0440_00380 PF01272 Transcription elongation factor, GreA/GreB, C-term QMA0440_00380 PF14760 Rnk N-terminus QMA0440_00383 PF00690 Cation transporter/ATPase, N-terminus QMA0440_00383 PF00689 Cation transporting ATPase, C-terminus QMA0440_00384 PF00356 Bacterial regulatory proteins, lacI family QMA0440_00385 PF02378 Phosphotransferase system, EIIC QMA0440_00385 PF00367 phosphotransferase system, EIIB QMA0440_00386 PF00128 Alpha amylase, catalytic domain QMA0440_00386 PF11941 Domain of unknown function (DUF3459) QMA0440_00387 PF01042 Endoribonuclease L-PSP QMA0440_00388 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain QMA0440_00388 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain QMA0440_00389 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain QMA0440_00389 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain QMA0440_00391 PF00381 PTS HPr component phosphorylation site QMA0440_00392 PF03668 P-loop ATPase protein family QMA0440_00393 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 QMA0440_00394 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein QMA0440_00395 PF04963 Sigma-54 factor, core binding domain QMA0440_00395 PF04552 Sigma-54, DNA binding domain QMA0440_00395 PF00309 Sigma-54 factor, Activator interacting domain (AID) QMA0440_00396 PF00005 ABC transporter QMA0440_00396 PF12399 Branched-chain amino acid ATP-binding cassette transporter QMA0440_00397 PF03968 OstA-like protein QMA0440_00398 PF06835 Lipopolysaccharide-assembly, LptC-related QMA0440_00400 PF00571 CBS domain QMA0440_00400 PF01380 SIS domain QMA0440_00401 PF01699 Sodium/calcium exchanger protein QMA0440_00402 PF00005 ABC transporter QMA0440_00403 PF02405 Permease MlaE QMA0440_00404 PF02470 MlaD protein QMA0440_00405 PF05494 MlaC protein QMA0440_00406 PF13466 STAS domain QMA0440_00407 PF01722 BolA-like protein QMA0440_00408 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) QMA0440_00409 PF13180 PDZ domain QMA0440_00410 PF00595 PDZ domain QMA0440_00410 PF13180 PDZ domain QMA0440_00411 PF06295 Protein of unknown function (DUF1043) QMA0440_00412 PF03969 AFG1-like ATPase QMA0440_00413 PF00572 Ribosomal protein L13 QMA0440_00414 PF00380 Ribosomal protein S9/S16 QMA0440_00415 PF02798 Glutathione S-transferase, N-terminal domain QMA0440_00415 PF00043 Glutathione S-transferase, C-terminal domain QMA0440_00416 PF04386 Stringent starvation protein B QMA0440_00418 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster QMA0440_00418 PF07992 Pyridine nucleotide-disulphide oxidoreductase QMA0440_00419 PF00310 Glutamine amidotransferases class-II QMA0440_00419 PF04898 Glutamate synthase central domain QMA0440_00419 PF01493 GXGXG motif QMA0440_00419 PF01645 Conserved region in glutamate synthase QMA0440_00420 PF04055 Radical SAM superfamily QMA0440_00420 PF16199 Radical_SAM C-terminal domain QMA0440_00421 PF01627 Hpt domain QMA0440_00421 PF00072 Response regulator receiver domain QMA0440_00421 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_00421 PF00989 PAS fold QMA0440_00421 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_00421 PF18415 Histidine kinase receptor ArcB trans-membrane domain QMA0440_00423 PF00912 Transglycosylase QMA0440_00424 PF04972 BON domain QMA0440_00425 PF13580 SIS domain QMA0440_00426 PF02021 Uncharacterised protein family UPF0102 QMA0440_00427 PF04348 LppC putative lipoprotein QMA0440_00428 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases QMA0440_00430 PF02678 Pirin QMA0440_00430 PF17954 Quercetinase C-terminal cupin domain QMA0440_00431 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00431 PF03466 LysR substrate binding domain QMA0440_00432 PF07681 DoxX QMA0440_00433 PF13997 YqjK-like protein QMA0440_00434 PF07332 Putative Actinobacterial Holin-X, holin superfamily III QMA0440_00435 PF05957 Bacterial protein of unknown function (DUF883) QMA0440_00437 PF13721 SecD export protein N-terminal TM region QMA0440_00438 PF09335 SNARE associated Golgi protein QMA0440_00440 PF00392 Bacterial regulatory proteins, gntR family QMA0440_00440 PF07729 FCD domain QMA0440_00441 PF07690 Major Facilitator Superfamily QMA0440_00442 PF02614 Glucuronate isomerase QMA0440_00443 PF01232 Mannitol dehydrogenase Rossmann domain QMA0440_00443 PF08125 Mannitol dehydrogenase C-terminal domain QMA0440_00444 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus QMA0440_00444 PF08666 SAF domain QMA0440_00445 PF10688 Bacterial inner membrane protein QMA0440_00446 PF00375 Sodium:dicarboxylate symporter family QMA0440_00447 PF03741 Integral membrane protein TerC family QMA0440_00448 PF01408 Oxidoreductase family, NAD-binding Rossmann fold QMA0440_00449 PF01863 Protein of unknown function DUF45 QMA0440_00451 PF05175 Methyltransferase small domain QMA0440_00452 PF07992 Pyridine nucleotide-disulphide oxidoreductase QMA0440_00452 PF00724 NADH:flavin oxidoreductase / NADH oxidase family QMA0440_00453 PF08479 POTRA domain, ShlB-type QMA0440_00453 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB QMA0440_00453 PF17287 POTRA domain QMA0440_00454 PF04829 Pre-toxin domain with VENN motif QMA0440_00454 PF05860 haemagglutination activity domain QMA0440_00454 PF13332 Hemagglutinin repeat QMA0440_00454 PF13018 Extended Signal Peptide of Type V secretion system QMA0440_00457 PF05594 Haemagluttinin repeat QMA0440_00457 PF13332 Hemagglutinin repeat QMA0440_00457 PF04829 Pre-toxin domain with VENN motif QMA0440_00457 PF05860 haemagglutination activity domain QMA0440_00459 PF13018 Extended Signal Peptide of Type V secretion system QMA0440_00459 PF13332 Hemagglutinin repeat QMA0440_00459 PF05860 haemagglutination activity domain QMA0440_00459 PF04829 Pre-toxin domain with VENN motif QMA0440_00462 PF00535 Glycosyl transferase family 2 QMA0440_00463 PF08241 Methyltransferase domain QMA0440_00468 PF13333 Integrase core domain QMA0440_00468 PF00665 Integrase core domain QMA0440_00468 PF13276 HTH-like domain QMA0440_00470 PF00106 short chain dehydrogenase QMA0440_00474 PF04546 Sigma-70, non-essential region QMA0440_00474 PF04545 Sigma-70, region 4 QMA0440_00474 PF04539 Sigma-70 region 3 QMA0440_00474 PF04542 Sigma-70 region 2 QMA0440_00474 PF00140 Sigma-70 factor, region 1.2 QMA0440_00474 PF03979 Sigma-70 factor, region 1.1 QMA0440_00475 PF10410 DnaB-helicase binding domain of primase QMA0440_00475 PF08278 DNA primase DnaG DnaB-binding QMA0440_00475 PF08275 DNA primase catalytic core, N-terminal domain QMA0440_00475 PF01807 CHC2 zinc finger QMA0440_00476 PF01165 Ribosomal protein S21 QMA0440_00477 PF00814 Glycoprotease family QMA0440_00478 PF02660 Glycerol-3-phosphate acyltransferase QMA0440_00479 PF02152 Dihydroneopterin aldolase QMA0440_00480 PF02673 Bacitracin resistance protein BacA QMA0440_00481 PF01743 Poly A polymerase head domain QMA0440_00481 PF12627 Probable RNA and SrmB- binding site of polymerase A QMA0440_00481 PF01966 HD domain QMA0440_00482 PF08239 Bacterial SH3 domain QMA0440_00483 PF01928 CYTH domain QMA0440_00484 PF03710 Glutamate-ammonia ligase adenylyltransferase QMA0440_00484 PF08335 GlnD PII-uridylyltransferase QMA0440_00485 PF00294 pfkB family carbohydrate kinase QMA0440_00485 PF01467 Cytidylyltransferase-like QMA0440_00486 PF04380 Membrane fusogenic activity QMA0440_00487 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase QMA0440_00488 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase QMA0440_00489 PF03738 Glutathionylspermidine synthase preATP-grasp QMA0440_00490 PF06693 Protein of unknown function (DUF1190) QMA0440_00491 PF02321 Outer membrane efflux protein QMA0440_00492 PF00293 NUDIX domain QMA0440_00493 PF06853 Protein of unknown function (DUF1249) QMA0440_00494 PF00149 Calcineurin-like phosphoesterase QMA0440_00495 PF05728 Uncharacterised protein family (UPF0227) QMA0440_00496 PF00204 DNA gyrase B QMA0440_00496 PF00986 DNA gyrase B subunit, carboxyl terminus QMA0440_00496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_00496 PF01751 Toprim domain QMA0440_00497 PF03466 LysR substrate binding domain QMA0440_00497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00498 PF02525 Flavodoxin-like fold QMA0440_00499 PF03989 DNA gyrase C-terminal domain, beta-propeller QMA0440_00499 PF00521 DNA gyrase/topoisomerase IV, subunit A QMA0440_00500 PF01553 Acyltransferase QMA0440_00501 PF07731 Multicopper oxidase QMA0440_00501 PF07732 Multicopper oxidase QMA0440_00502 PF11842 Domain of unknown function (DUF3362) QMA0440_00502 PF08497 Radical SAM N-terminal QMA0440_00502 PF04055 Radical SAM superfamily QMA0440_00503 PF00248 Aldo/keto reductase family QMA0440_00505 PF00465 Iron-containing alcohol dehydrogenase QMA0440_00506 PF12833 Helix-turn-helix domain QMA0440_00506 PF06719 AraC-type transcriptional regulator N-terminus QMA0440_00507 PF09335 SNARE associated Golgi protein QMA0440_00508 PF01053 Cys/Met metabolism PLP-dependent enzyme QMA0440_00509 PF01618 MotA/TolQ/ExbB proton channel family QMA0440_00510 PF02472 Biopolymer transport protein ExbD/TolR QMA0440_00517 PF00437 Type II/IV secretion system protein QMA0440_00521 PF00263 Bacterial type II and III secretion system protein QMA0440_00521 PF13629 Pilus formation protein N terminal region QMA0440_00521 PF04972 BON domain QMA0440_00526 PF08501 Shikimate dehydrogenase substrate binding domain QMA0440_00527 PF00593 TonB dependent receptor QMA0440_00527 PF07715 TonB-dependent Receptor Plug Domain QMA0440_00528 PF11806 Domain of unknown function (DUF3327) QMA0440_00528 PF00756 Putative esterase QMA0440_00529 PF03621 MbtH-like protein QMA0440_00530 PF00668 Condensation domain QMA0440_00530 PF13193 AMP-binding enzyme C-terminal domain QMA0440_00530 PF00501 AMP-binding enzyme QMA0440_00530 PF00975 Thioesterase domain QMA0440_00530 PF00550 Phosphopantetheine attachment site QMA0440_00532 PF00005 ABC transporter QMA0440_00533 PF01032 FecCD transport family QMA0440_00534 PF01032 FecCD transport family QMA0440_00535 PF05977 Transmembrane secretion effector QMA0440_00536 PF01497 Periplasmic binding protein QMA0440_00537 PF00425 chorismate binding enzyme QMA0440_00538 PF13193 AMP-binding enzyme C-terminal domain QMA0440_00538 PF00501 AMP-binding enzyme QMA0440_00539 PF00857 Isochorismatase family QMA0440_00539 PF00550 Phosphopantetheine attachment site QMA0440_00541 PF00550 Phosphopantetheine attachment site QMA0440_00541 PF00668 Condensation domain QMA0440_00541 PF13193 AMP-binding enzyme C-terminal domain QMA0440_00541 PF00501 AMP-binding enzyme QMA0440_00541 PF00975 Thioesterase domain QMA0440_00543 PF00291 Pyridoxal-phosphate dependent enzyme QMA0440_00544 PF01490 Transmembrane amino acid transporter protein QMA0440_00545 PF00871 Acetokinase family QMA0440_00546 PF01228 Glycine radical QMA0440_00546 PF02901 Pyruvate formate lyase-like QMA0440_00547 PF00294 pfkB family carbohydrate kinase QMA0440_00554 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain QMA0440_00554 PF01464 Transglycosylase SLT domain QMA0440_00555 PF04362 Bacterial Fe(2+) trafficking QMA0440_00556 PF00633 Helix-hairpin-helix motif QMA0440_00556 PF14815 NUDIX domain QMA0440_00556 PF00730 HhH-GPD superfamily base excision DNA repair protein QMA0440_00556 PF10576 Iron-sulfur binding domain of endonuclease III QMA0440_00557 PF02390 Putative methyltransferase QMA0440_00558 PF04320 Protein with unknown function (DUF469) QMA0440_00559 PF04960 Glutaminase QMA0440_00560 PF11101 Protein of unknown function (DUF2884) QMA0440_00561 PF06969 HemN C-terminal domain QMA0440_00561 PF04055 Radical SAM superfamily QMA0440_00562 PF01725 Ham1 family QMA0440_00563 PF02594 Uncharacterised ACR, YggU family COG1872 QMA0440_00564 PF02325 YGGT family QMA0440_00565 PF03807 NADP oxidoreductase coenzyme F420-dependent QMA0440_00565 PF14748 Pyrroline-5-carboxylate reductase dimerisation QMA0440_00566 PF01168 Alanine racemase, N-terminal domain QMA0440_00567 PF00437 Type II/IV secretion system protein QMA0440_00568 PF04371 Porphyromonas-type peptidyl-arginine deiminase QMA0440_00569 PF00795 Carbon-nitrogen hydrolase QMA0440_00570 PF03652 Holliday junction resolvase QMA0440_00571 PF02622 Uncharacterized ACR, COG1678 QMA0440_00572 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain QMA0440_00572 PF02951 Prokaryotic glutathione synthetase, N-terminal domain QMA0440_00573 PF04452 RNA methyltransferase QMA0440_00574 PF04231 Endonuclease I QMA0440_00575 PF10263 SprT-like family QMA0440_00575 PF17283 SprT-like zinc ribbon domain QMA0440_00577 PF04143 Sulphur transport QMA0440_00579 PF02773 S-adenosylmethionine synthetase, C-terminal domain QMA0440_00579 PF00438 S-adenosylmethionine synthetase, N-terminal domain QMA0440_00579 PF02772 S-adenosylmethionine synthetase, central domain QMA0440_00580 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain QMA0440_00580 PF17944 Arginine decarboxylase C-terminal helical extension QMA0440_00580 PF17810 Arginine decarboxylase helical bundle domain QMA0440_00583 PF02779 Transketolase, pyrimidine binding domain QMA0440_00583 PF02780 Transketolase, C-terminal domain QMA0440_00583 PF00456 Transketolase, thiamine diphosphate binding domain QMA0440_00584 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain QMA0440_00584 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QMA0440_00585 PF00162 Phosphoglycerate kinase QMA0440_00586 PF01116 Fructose-bisphosphate aldolase class-II QMA0440_00587 PF05552 Conserved TM helix QMA0440_00587 PF00924 Mechanosensitive ion channel QMA0440_00588 PF01810 LysE type translocator QMA0440_00589 PF04402 Protein of unknown function (DUF541) QMA0440_00590 PF03466 LysR substrate binding domain QMA0440_00590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00591 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) QMA0440_00592 PF01842 ACT domain QMA0440_00592 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain QMA0440_00592 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain QMA0440_00593 PF01812 5-formyltetrahydrofolate cyclo-ligase family QMA0440_00594 PF05164 Cell division protein ZapA QMA0440_00595 PF03695 Uncharacterised protein family (UPF0149) QMA0440_00596 PF00557 Metallopeptidase family M24 QMA0440_00596 PF05195 Aminopeptidase P, N-terminal domain QMA0440_00597 PF01494 FAD binding domain QMA0440_00598 PF01494 FAD binding domain QMA0440_00599 PF01571 Aminomethyltransferase folate-binding domain QMA0440_00599 PF08669 Glycine cleavage T-protein C-terminal barrel domain QMA0440_00600 PF01597 Glycine cleavage H-protein QMA0440_00601 PF02347 Glycine cleavage system P-protein QMA0440_00603 PF03006 Haemolysin-III related QMA0440_00605 PF01571 Aminomethyltransferase folate-binding domain QMA0440_00606 PF03937 Flavinator of succinate dehydrogenase QMA0440_00607 PF07254 Membrane-bound toxin component of toxin-antitoxin system QMA0440_00608 PF00258 Flavodoxin QMA0440_00609 PF00589 Phage integrase family QMA0440_00609 PF02899 Phage integrase, N-terminal SAM-like domain QMA0440_00610 PF10411 Disulfide bond isomerase protein N-terminus QMA0440_00610 PF13098 Thioredoxin-like domain QMA0440_00611 PF02272 DHHA1 domain QMA0440_00611 PF01368 DHH family QMA0440_00611 PF17768 RecJ OB domain QMA0440_00612 PF03462 PCRF domain QMA0440_00612 PF00472 RF-1 domain QMA0440_00613 PF00152 tRNA synthetases class II (D, K and N) QMA0440_00613 PF01336 OB-fold nucleic acid binding domain QMA0440_00615 PF02405 Permease MlaE QMA0440_00616 PF00005 ABC transporter QMA0440_00622 PF00263 Bacterial type II and III secretion system protein QMA0440_00622 PF03958 Bacterial type II/III secretion system short domain QMA0440_00623 PF00437 Type II/IV secretion system protein QMA0440_00624 PF00482 Type II secretion system (T2SS), protein F QMA0440_00625 PF08334 Type II secretion system (T2SS), protein G QMA0440_00625 PF07963 Prokaryotic N-terminal methylation motif QMA0440_00627 PF02501 Type II secretion system (T2SS), protein I QMA0440_00627 PF07963 Prokaryotic N-terminal methylation motif QMA0440_00628 PF11612 Type II secretion system (T2SS), protein J QMA0440_00628 PF07963 Prokaryotic N-terminal methylation motif QMA0440_00636 PF03466 LysR substrate binding domain QMA0440_00636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00637 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00637 PF03466 LysR substrate binding domain QMA0440_00638 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain QMA0440_00638 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain QMA0440_00639 PF00356 Bacterial regulatory proteins, lacI family QMA0440_00640 PF01553 Acyltransferase QMA0440_00640 PF13193 AMP-binding enzyme C-terminal domain QMA0440_00640 PF00501 AMP-binding enzyme QMA0440_00641 PF07690 Major Facilitator Superfamily QMA0440_00642 PF00248 Aldo/keto reductase family QMA0440_00643 PF03741 Integral membrane protein TerC family QMA0440_00644 PF02976 DNA mismatch repair enzyme MutH QMA0440_00645 PF00293 NUDIX domain QMA0440_00646 PF01590 GAF domain QMA0440_00646 PF00391 PEP-utilising enzyme, mobile domain QMA0440_00646 PF05524 PEP-utilising enzyme, N-terminal QMA0440_00646 PF02896 PEP-utilising enzyme, TIM barrel domain QMA0440_00647 PF01790 Prolipoprotein diacylglyceryl transferase QMA0440_00648 PF00303 Thymidylate synthase QMA0440_00651 PF12528 Type II secretion prepilin peptidase dependent protein C QMA0440_00651 PF07963 Prokaryotic N-terminal methylation motif QMA0440_00652 PF17946 RecC C-terminal domain QMA0440_00653 PF00675 Insulinase (Peptidase family M16) QMA0440_00653 PF05193 Peptidase M16 inactive domain QMA0440_00653 PF16187 Middle or third domain of peptidase_M16 QMA0440_00654 PF00580 UvrD/REP helicase N-terminal domain QMA0440_00654 PF13361 UvrD-like helicase C-terminal domain QMA0440_00654 PF12705 PD-(D/E)XK nuclease superfamily QMA0440_00655 PF13538 UvrD-like helicase C-terminal domain QMA0440_00656 PF00583 Acetyltransferase (GNAT) family QMA0440_00656 PF00696 Amino acid kinase family QMA0440_00657 PF11741 AMIN domain QMA0440_00657 PF01520 N-acetylmuramoyl-L-alanine amidase QMA0440_00661 PF06725 3D domain QMA0440_00661 PF03562 MltA specific insert domain QMA0440_00662 PF00899 ThiF family QMA0440_00663 PF02657 Fe-S metabolism associated domain QMA0440_00664 PF00266 Aminotransferase class-V QMA0440_00665 PF03466 LysR substrate binding domain QMA0440_00665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00666 PF04241 Protein of unknown function (DUF423) QMA0440_00667 PF18125 RlmM ferredoxin-like domain QMA0440_00667 PF01728 FtsJ-like methyltransferase QMA0440_00668 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain QMA0440_00668 PF01367 5'-3' exonuclease, C-terminal SAM fold QMA0440_00669 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases QMA0440_00669 PF03641 Possible lysine decarboxylase QMA0440_00669 PF11892 Domain of unknown function (DUF3412) QMA0440_00670 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term QMA0440_00670 PF14489 QueF-like protein QMA0440_00671 PF07348 Syd protein (SUKH-2) QMA0440_00672 PF04287 tRNA pseudouridine synthase C QMA0440_00673 PF00849 RNA pseudouridylate synthase QMA0440_00674 PF00258 Flavodoxin QMA0440_00675 PF11944 Protein of unknown function (DUF3461) QMA0440_00676 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal QMA0440_00676 PF00132 Bacterial transferase hexapeptide (six repeats) QMA0440_00676 PF14602 Hexapeptide repeat of succinyl-transferase QMA0440_00677 PF01842 ACT domain QMA0440_00677 PF01909 Nucleotidyltransferase domain QMA0440_00677 PF01966 HD domain QMA0440_00677 PF08335 GlnD PII-uridylyltransferase QMA0440_00678 PF00557 Metallopeptidase family M24 QMA0440_00679 PF00318 Ribosomal protein S2 QMA0440_00680 PF00889 Elongation factor TS QMA0440_00681 PF00696 Amino acid kinase family QMA0440_00682 PF01765 Ribosome recycling factor QMA0440_00683 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase QMA0440_00683 PF13288 DXP reductoisomerase C-terminal domain QMA0440_00683 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain QMA0440_00684 PF01255 Putative undecaprenyl diphosphate synthase QMA0440_00686 PF17820 PDZ domain QMA0440_00686 PF02163 Peptidase family M50 QMA0440_00687 PF07244 Surface antigen variable number repeat QMA0440_00687 PF01103 Surface antigen QMA0440_00688 PF03938 Outer membrane protein (OmpH-like) QMA0440_00689 PF00132 Bacterial transferase hexapeptide (six repeats) QMA0440_00689 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD QMA0440_00690 PF07977 FabA-like domain QMA0440_00691 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 QMA0440_00691 PF00132 Bacterial transferase hexapeptide (six repeats) QMA0440_00692 PF02684 Lipid-A-disaccharide synthetase QMA0440_00693 PF01351 Ribonuclease HII QMA0440_00694 PF01336 OB-fold nucleic acid binding domain QMA0440_00694 PF14579 Helix-hairpin-helix motif QMA0440_00694 PF17657 Bacterial DNA polymerase III alpha subunit finger domain QMA0440_00694 PF07733 Bacterial DNA polymerase III alpha NTPase domain QMA0440_00694 PF02811 PHP domain QMA0440_00695 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit QMA0440_00699 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily QMA0440_00700 PF01171 PP-loop family QMA0440_00700 PF09179 TilS substrate binding domain QMA0440_00700 PF11734 TilS substrate C-terminal domain QMA0440_00701 PF00034 Cytochrome c QMA0440_00702 PF07073 Modulator of Rho-dependent transcription termination (ROF) QMA0440_00703 PF06786 Uncharacterised protein family (UPF0253) QMA0440_00704 PF07152 YaeQ protein QMA0440_00705 PF00472 RF-1 domain QMA0440_00706 PF04170 NlpE N-terminal domain QMA0440_00706 PF17185 NlpE C-terminal OB domain QMA0440_00707 PF04073 Aminoacyl-tRNA editing domain QMA0440_00707 PF03129 Anticodon binding domain QMA0440_00707 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) QMA0440_00708 PF01980 tRNA-methyltransferase O QMA0440_00708 PF18389 TrmO C-terminal domain QMA0440_00709 PF16358 RcsF lipoprotein QMA0440_00710 PF03180 NLPA lipoprotein QMA0440_00711 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_00712 PF09383 NIL domain QMA0440_00712 PF00005 ABC transporter QMA0440_00718 PF10043 Predicted periplasmic lipoprotein (DUF2279) QMA0440_00719 PF13091 PLD-like domain QMA0440_00720 PF13607 Succinyl-CoA ligase like flavodoxin domain QMA0440_00720 PF00583 Acetyltransferase (GNAT) family QMA0440_00720 PF13380 CoA binding domain QMA0440_00722 PF00085 Thioredoxin QMA0440_00723 PF08032 RNA 2'-O ribose methyltransferase substrate binding QMA0440_00723 PF00588 SpoU rRNA Methylase family QMA0440_00724 PF07690 Major Facilitator Superfamily QMA0440_00725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion QMA0440_00725 PF00529 HlyD membrane-fusion protein of T1SS QMA0440_00726 PF01047 MarR family QMA0440_00727 PF07690 Major Facilitator Superfamily QMA0440_00729 PF04069 Substrate binding domain of ABC-type glycine betaine transport system QMA0440_00731 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_00732 PF00005 ABC transporter QMA0440_00732 PF00571 CBS domain QMA0440_00733 PF00268 Ribonucleotide reductase, small chain QMA0440_00734 PF08343 Ribonucleotide reductase N-terminal QMA0440_00734 PF02867 Ribonucleotide reductase, barrel domain QMA0440_00734 PF00317 Ribonucleotide reductase, all-alpha domain QMA0440_00735 PF07972 NrdI Flavodoxin like QMA0440_00738 PF09400 Protein of unknown function (DUF2002) QMA0440_00739 PF06711 Protein of unknown function (DUF1198) QMA0440_00741 PF00313 'Cold-shock' DNA-binding domain QMA0440_00742 PF06039 Malate:quinone oxidoreductase (Mqo) QMA0440_00743 PF01070 FMN-dependent dehydrogenase QMA0440_00744 PF02652 L-lactate permease QMA0440_00745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00745 PF03466 LysR substrate binding domain QMA0440_00747 PF00561 alpha/beta hydrolase fold QMA0440_00749 PF00005 ABC transporter QMA0440_00750 PF02653 Branched-chain amino acid transport system / permease component QMA0440_00752 PF02782 FGGY family of carbohydrate kinases, C-terminal domain QMA0440_00752 PF00370 FGGY family of carbohydrate kinases, N-terminal domain QMA0440_00753 PF01380 SIS domain QMA0440_00753 PF00571 CBS domain QMA0440_00754 PF01527 Transposase QMA0440_00756 PF18807 Tripartite Tc toxins repeat QMA0440_00756 PF14431 YwqJ-like deaminase QMA0440_00757 PF03534 Salmonella virulence plasmid 65kDa B protein QMA0440_00757 PF12255 Insecticide toxin TcdB middle/C-terminal region QMA0440_00757 PF12256 Insecticide toxin TcdB middle/N-terminal region QMA0440_00759 PF18413 Neuraminidase-like domain QMA0440_00759 PF18413 Neuraminidase-like domain QMA0440_00759 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain QMA0440_00759 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain QMA0440_00761 PF01527 Transposase QMA0440_00762 PF03466 LysR substrate binding domain QMA0440_00762 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00765 PF13953 PapC C-terminal domain QMA0440_00765 PF13954 PapC N-terminal domain QMA0440_00765 PF00577 Outer membrane usher protein QMA0440_00766 PF02753 Pili assembly chaperone PapD, C-terminal domain QMA0440_00766 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain QMA0440_00768 PF13276 HTH-like domain QMA0440_00768 PF00665 Integrase core domain QMA0440_00768 PF13333 Integrase core domain QMA0440_00769 PF01527 Transposase QMA0440_00772 PF13356 Arm DNA-binding domain QMA0440_00772 PF00589 Phage integrase family QMA0440_00774 PF01668 SmpB protein QMA0440_00775 PF03364 Polyketide cyclase / dehydrase and lipid transport QMA0440_00776 PF03658 RnfH family Ubiquitin QMA0440_00777 PF04355 SmpA / OmlA family QMA0440_00778 PF02463 RecF/RecN/SMC N terminal domain QMA0440_00779 PF01513 ATP-NAD kinase QMA0440_00780 PF01025 GrpE QMA0440_00781 PF03167 Uracil DNA glycosylase superfamily QMA0440_00782 PF01228 Glycine radical QMA0440_00784 PF12796 Ankyrin repeats (3 copies) QMA0440_00785 PF00270 DEAD/DEAH box helicase QMA0440_00785 PF00271 Helicase conserved C-terminal domain QMA0440_00786 PF05175 Methyltransferase small domain QMA0440_00787 PF02910 Fumarate reductase flavoprotein C-term QMA0440_00787 PF00890 FAD binding domain QMA0440_00788 PF08281 Sigma-70, region 4 QMA0440_00788 PF04542 Sigma-70 region 2 QMA0440_00789 PF03872 Anti sigma-E protein RseA, N-terminal domain QMA0440_00789 PF03873 Anti sigma-E protein RseA, C-terminal domain QMA0440_00790 PF17188 MucB/RseB C-terminal domain QMA0440_00790 PF03888 MucB/RseB N-terminal domain QMA0440_00792 PF00009 Elongation factor Tu GTP binding domain QMA0440_00792 PF03144 Elongation factor Tu domain 2 QMA0440_00792 PF00679 Elongation factor G C-terminus QMA0440_00792 PF06421 GTP-binding protein LepA C-terminus QMA0440_00793 PF10502 Signal peptidase, peptidase S26 QMA0440_00794 PF14622 Ribonuclease-III-like QMA0440_00794 PF00035 Double-stranded RNA binding motif QMA0440_00795 PF07650 KH domain QMA0440_00795 PF01926 50S ribosome-binding GTPase QMA0440_00796 PF02565 Recombination protein O C terminal QMA0440_00796 PF11967 Recombination protein O N terminal QMA0440_00797 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ QMA0440_00798 PF01648 4'-phosphopantetheinyl transferase superfamily QMA0440_00799 PF12838 4Fe-4S dicluster domain QMA0440_00800 PF01418 Helix-turn-helix domain, rpiR family QMA0440_00800 PF01380 SIS domain QMA0440_00801 PF01380 SIS domain QMA0440_00802 PF02378 Phosphotransferase system, EIIC QMA0440_00802 PF00367 phosphotransferase system, EIIB QMA0440_00804 PF14437 MafB19-like deaminase QMA0440_00805 PF00497 Bacterial extracellular solute-binding proteins, family 3 QMA0440_00805 PF01464 Transglycosylase SLT domain QMA0440_00806 PF02769 AIR synthase related protein, C-terminal domain QMA0440_00806 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal QMA0440_00806 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain QMA0440_00808 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_00808 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_00809 PF13942 YfhG lipoprotein QMA0440_00810 PF00158 Sigma-54 interaction domain QMA0440_00810 PF00072 Response regulator receiver domain QMA0440_00811 PF00795 Carbon-nitrogen hydrolase QMA0440_00811 PF02540 NAD synthase QMA0440_00812 PF00543 Nitrogen regulatory protein P-II QMA0440_00813 PF10797 Protein of unknown function QMA0440_00814 PF10941 Protein of unknown function DUF2620 QMA0440_00815 PF02126 Phosphotriesterase family QMA0440_00816 PF01168 Alanine racemase, N-terminal domain QMA0440_00818 PF14503 YhfZ C-terminal domain QMA0440_00818 PF14502 Helix-turn-helix domain QMA0440_00819 PF00970 Oxidoreductase FAD-binding domain QMA0440_00819 PF00042 Globin QMA0440_00819 PF00175 Oxidoreductase NAD-binding domain QMA0440_00820 PF00464 Serine hydroxymethyltransferase QMA0440_00821 PF12832 MFS_1 like family QMA0440_00822 PF00874 PRD domain QMA0440_00823 PF06226 Protein of unknown function (DUF1007) QMA0440_00824 PF03824 High-affinity nickel-transport protein QMA0440_00825 PF00459 Inositol monophosphatase family QMA0440_00826 PF00588 SpoU rRNA Methylase family QMA0440_00827 PF02082 Transcriptional regulator QMA0440_00828 PF00266 Aminotransferase class-V QMA0440_00829 PF01592 NifU-like N terminal domain QMA0440_00830 PF01521 Iron-sulphur cluster biosynthesis QMA0440_00831 PF07743 HSCB C-terminal oligomerisation domain QMA0440_00831 PF00226 DnaJ domain QMA0440_00832 PF00012 Hsp70 protein QMA0440_00833 PF00111 2Fe-2S iron-sulfur cluster binding domain QMA0440_00834 PF04384 Iron-sulphur cluster assembly QMA0440_00835 PF12404 Peptidase QMA0440_00835 PF00883 Cytosol aminopeptidase family, catalytic domain QMA0440_00836 PF14581 SseB protein C-terminal domain QMA0440_00836 PF07179 SseB protein N-terminal domain QMA0440_00837 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain QMA0440_00837 PF00207 Alpha-2-macroglobulin family QMA0440_00837 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain QMA0440_00837 PF07703 Alpha-2-macroglobulin bait region domain QMA0440_00837 PF17962 Bacterial macroglobulin domain 6 QMA0440_00837 PF01835 MG2 domain QMA0440_00837 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain QMA0440_00837 PF11974 Bacterial alpha-2-macroglobulin MG3 domain QMA0440_00837 PF07678 A-macroglobulin TED domain QMA0440_00838 PF00905 Penicillin binding protein transpeptidase domain QMA0440_00838 PF00912 Transglycosylase QMA0440_00838 PF06832 Penicillin-Binding Protein C-terminus Family QMA0440_00840 PF00334 Nucleoside diphosphate kinase QMA0440_00841 PF04055 Radical SAM superfamily QMA0440_00843 PF13464 Domain of unknown function (DUF4115) QMA0440_00844 PF04551 GcpE protein QMA0440_00845 PF13393 Histidyl-tRNA synthetase QMA0440_00845 PF03129 Anticodon binding domain QMA0440_00846 PF09976 Tetratricopeptide repeat-like domain QMA0440_00847 PF13360 PQQ-like domain QMA0440_00848 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal QMA0440_00848 PF01926 50S ribosome-binding GTPase QMA0440_00849 PF07191 zinc-ribbons QMA0440_00850 PF13742 OB-fold nucleic acid binding domain QMA0440_00850 PF02601 Exonuclease VII, large subunit QMA0440_00851 PF00478 IMP dehydrogenase / GMP reductase domain QMA0440_00851 PF00571 CBS domain QMA0440_00852 PF00117 Glutamine amidotransferase class-I QMA0440_00852 PF02540 NAD synthase QMA0440_00852 PF00958 GMP synthase C terminal domain QMA0440_00854 PF08543 Phosphomethylpyrimidine kinase QMA0440_00857 PF00781 Diacylglycerol kinase catalytic domain QMA0440_00859 PF07411 Domain of unknown function (DUF1508) QMA0440_00860 PF00072 Response regulator receiver domain QMA0440_00860 PF00486 Transcriptional regulatory protein, C terminal QMA0440_00861 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_00861 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_00861 PF00672 HAMP domain QMA0440_00862 PF07690 Major Facilitator Superfamily QMA0440_00863 PF00873 AcrB/AcrD/AcrF family QMA0440_00864 PF00873 AcrB/AcrD/AcrF family QMA0440_00865 PF13533 Biotin-lipoyl like QMA0440_00869 PF13954 PapC N-terminal domain QMA0440_00869 PF00577 Outer membrane usher protein QMA0440_00869 PF13953 PapC C-terminal domain QMA0440_00870 PF02753 Pili assembly chaperone PapD, C-terminal domain QMA0440_00870 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain QMA0440_00872 PF00012 Hsp70 protein QMA0440_00873 PF00571 CBS domain QMA0440_00873 PF01769 Divalent cation transporter QMA0440_00873 PF03448 MgtE intracellular N domain QMA0440_00875 PF02541 Ppx/GppA phosphatase family QMA0440_00876 PF17941 Polyphosphate kinase C-terminal domain 1 QMA0440_00876 PF13089 Polyphosphate kinase N-terminal domain QMA0440_00876 PF02503 Polyphosphate kinase middle domain QMA0440_00876 PF13090 Polyphosphate kinase C-terminal domain 2 QMA0440_00877 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_00878 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_00879 PF00005 ABC transporter QMA0440_00880 PF13302 Acetyltransferase (GNAT) domain QMA0440_00881 PF00551 Formyl transferase QMA0440_00882 PF00586 AIR synthase related protein, N-terminal domain QMA0440_00882 PF02769 AIR synthase related protein, C-terminal domain QMA0440_00884 PF00860 Permease family QMA0440_00885 PF00308 Bacterial dnaA protein QMA0440_00886 PF03960 ArsC family QMA0440_00887 PF01435 Peptidase family M48 QMA0440_00887 PF07720 Tetratricopeptide repeat QMA0440_00888 PF01594 AI-2E family transporter QMA0440_00889 PF00578 AhpC/TSA family QMA0440_00890 PF01842 ACT domain QMA0440_00891 PF00701 Dihydrodipicolinate synthetase family QMA0440_00892 PF06804 NlpB/DapX lipoprotein QMA0440_00893 PF01259 SAICAR synthetase QMA0440_00894 PF04284 Protein of unknown function (DUF441) QMA0440_00895 PF17176 tRNA-binding domain QMA0440_00895 PF08351 Domain of unknown function (DUF1726) QMA0440_00895 PF13718 GNAT acetyltransferase 2 QMA0440_00895 PF05127 Helicase QMA0440_00896 PF02230 Phospholipase/Carboxylesterase QMA0440_00897 PF13980 Uncharacterised protein family (UPF0370) QMA0440_00898 PF02557 D-alanyl-D-alanine carboxypeptidase QMA0440_00899 PF07687 Peptidase dimerisation domain QMA0440_00899 PF01546 Peptidase family M20/M25/M40 QMA0440_00900 PF03960 ArsC family QMA0440_00901 PF01817 Chorismate mutase type II QMA0440_00903 PF00873 AcrB/AcrD/AcrF family QMA0440_00905 PF00072 Response regulator receiver domain QMA0440_00905 PF00196 Bacterial regulatory proteins, luxR family QMA0440_00906 PF13187 4Fe-4S dicluster domain QMA0440_00906 PF00037 4Fe-4S binding domain QMA0440_00906 PF12800 4Fe-4S binding domain QMA0440_00907 PF03927 NapD protein QMA0440_00908 PF01568 Molydopterin dinucleotide binding domain QMA0440_00908 PF10518 TAT (twin-arginine translocation) pathway signal sequence QMA0440_00908 PF00384 Molybdopterin oxidoreductase QMA0440_00908 PF04879 Molybdopterin oxidoreductase Fe4S4 domain QMA0440_00909 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) QMA0440_00910 PF03264 NapC/NirT cytochrome c family, N-terminal region QMA0440_00911 PF00293 NUDIX domain QMA0440_00912 PF00390 Malic enzyme, N-terminal domain QMA0440_00912 PF03949 Malic enzyme, NAD binding domain QMA0440_00912 PF01515 Phosphate acetyl/butaryl transferase QMA0440_00913 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 QMA0440_00914 PF01218 Coproporphyrinogen III oxidase QMA0440_00915 PF00583 Acetyltransferase (GNAT) family QMA0440_00917 PF00589 Phage integrase family QMA0440_00918 PF06480 FtsH Extracellular QMA0440_00918 PF17862 AAA+ lid domain QMA0440_00918 PF01434 Peptidase family M41 QMA0440_00918 PF00004 ATPase family associated with various cellular activities (AAA) QMA0440_00926 PF04076 Bacterial OB fold (BOF) protein QMA0440_00927 PF06572 Protein of unknown function (DUF1131) QMA0440_00928 PF04261 Dyp-type peroxidase family QMA0440_00930 PF00701 Dihydrodipicolinate synthetase family QMA0440_00931 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase QMA0440_00932 PF00480 ROK family QMA0440_00933 PF04074 YhcH/YjgK/YiaL QMA0440_00934 PF01380 SIS domain QMA0440_00934 PF01418 Helix-turn-helix domain, rpiR family QMA0440_00935 PF07690 Major Facilitator Superfamily QMA0440_00937 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_00938 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_00939 PF00005 ABC transporter QMA0440_00940 PF00291 Pyridoxal-phosphate dependent enzyme QMA0440_00941 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 QMA0440_00942 PF00391 PEP-utilising enzyme, mobile domain QMA0440_00942 PF05524 PEP-utilising enzyme, N-terminal QMA0440_00942 PF02896 PEP-utilising enzyme, TIM barrel domain QMA0440_00943 PF00381 PTS HPr component phosphorylation site QMA0440_00944 PF00291 Pyridoxal-phosphate dependent enzyme QMA0440_00946 PF04354 ZipA, C-terminal FtsZ-binding domain QMA0440_00947 PF01653 NAD-dependent DNA ligase adenylation domain QMA0440_00947 PF00533 BRCA1 C Terminus (BRCT) domain QMA0440_00947 PF03119 NAD-dependent DNA ligase C4 zinc finger domain QMA0440_00947 PF12826 Helix-hairpin-helix motif QMA0440_00947 PF03120 NAD-dependent DNA ligase OB-fold domain QMA0440_00948 PF12843 Putative quorum-sensing-regulated virulence factor QMA0440_00953 PF00749 tRNA synthetases class I (E and Q), catalytic domain QMA0440_00958 PF07662 Na+ dependent nucleoside transporter C-terminus QMA0440_00958 PF07670 Nucleoside recognition QMA0440_00958 PF01773 Na+ dependent nucleoside transporter N-terminus QMA0440_00959 PF01566 Natural resistance-associated macrophage protein QMA0440_00961 PF03466 LysR substrate binding domain QMA0440_00961 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_00963 PF02685 Glucokinase QMA0440_00964 PF07690 Major Facilitator Superfamily QMA0440_00965 PF00072 Response regulator receiver domain QMA0440_00965 PF04397 LytTr DNA-binding domain QMA0440_00966 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_00966 PF07694 5TMR of 5TMR-LYT QMA0440_00966 PF06580 Histidine kinase QMA0440_00967 PF07350 Protein of unknown function (DUF1479) QMA0440_00968 PF00155 Aminotransferase class I and II QMA0440_00969 PF01292 Prokaryotic cytochrome b561 QMA0440_00971 PF13406 Transglycosylase SLT domain QMA0440_00972 PF03831 PhnA domain QMA0440_00972 PF08274 PhnA Zinc-Ribbon QMA0440_00976 PF00005 ABC transporter QMA0440_00977 PF03379 CcmB protein QMA0440_00978 PF01578 Cytochrome C assembly protein QMA0440_00979 PF04995 Heme exporter protein D (CcmD) QMA0440_00980 PF03100 CcmE QMA0440_00981 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal QMA0440_00981 PF01578 Cytochrome C assembly protein QMA0440_00982 PF08534 Redoxin QMA0440_00983 PF03918 Cytochrome C biogenesis protein QMA0440_00984 PF03918 Cytochrome C biogenesis protein QMA0440_00985 PF04333 MlaA lipoprotein QMA0440_00986 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) QMA0440_00987 PF04175 Protein of unknown function (DUF406) QMA0440_00988 PF00108 Thiolase, N-terminal domain QMA0440_00988 PF02803 Thiolase, C-terminal domain QMA0440_00989 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain QMA0440_00989 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain QMA0440_00989 PF00378 Enoyl-CoA hydratase/isomerase QMA0440_00990 PF00300 Histidine phosphatase superfamily (branch 1) QMA0440_00991 PF01713 Smr domain QMA0440_00992 PF05175 Methyltransferase small domain QMA0440_00993 PF01264 Chorismate synthase QMA0440_00994 PF03411 Penicillin-insensitive murein endopeptidase QMA0440_00995 PF01925 Sulfite exporter TauE/SafE QMA0440_00996 PF04315 Elongation factor P hydroxylase QMA0440_00997 PF08891 YfcL protein QMA0440_00998 PF05430 S-adenosyl-L-methionine-dependent methyltransferase QMA0440_00998 PF01266 FAD dependent oxidoreductase QMA0440_00999 PF00109 Beta-ketoacyl synthase, N-terminal domain QMA0440_00999 PF02801 Beta-ketoacyl synthase, C-terminal domain QMA0440_01005 PF00578 AhpC/TSA family QMA0440_01006 PF00155 Aminotransferase class I and II QMA0440_01010 PF11890 Domain of unknown function (DUF3410) QMA0440_01010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain QMA0440_01010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain QMA0440_01011 PF02774 Semialdehyde dehydrogenase, dimerisation domain QMA0440_01011 PF01118 Semialdehyde dehydrogenase, NAD binding domain QMA0440_01012 PF01416 tRNA pseudouridine synthase QMA0440_01013 PF09335 SNARE associated Golgi protein QMA0440_01014 PF17848 Acetyl-coA carboxylase zinc finger domain QMA0440_01014 PF01039 Carboxyl transferase domain QMA0440_01015 PF02875 Mur ligase family, glutamate ligase domain QMA0440_01015 PF08245 Mur ligase middle domain QMA0440_01016 PF05036 Sporulation related domain QMA0440_01017 PF02674 Colicin V production protein QMA0440_01018 PF00156 Phosphoribosyl transferase domain QMA0440_01019 PF02441 Flavoprotein QMA0440_01020 PF00497 Bacterial extracellular solute-binding proteins, family 3 QMA0440_01021 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_01022 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_01023 PF00005 ABC transporter QMA0440_01024 PF08338 Domain of unknown function (DUF1731) QMA0440_01024 PF01370 NAD dependent epimerase/dehydratase family QMA0440_01025 PF02798 Glutathione S-transferase, N-terminal domain QMA0440_01025 PF00043 Glutathione S-transferase, C-terminal domain QMA0440_01027 PF12850 Calcineurin-like phosphoesterase superfamily domain QMA0440_01028 PF00293 NUDIX domain QMA0440_01029 PF03611 PTS system sugar-specific permease component QMA0440_01031 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 QMA0440_01032 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family QMA0440_01032 PF00356 Bacterial regulatory proteins, lacI family QMA0440_01033 PF01515 Phosphate acetyl/butaryl transferase QMA0440_01033 PF07085 DRTGG domain QMA0440_01034 PF00871 Acetokinase family QMA0440_01035 PF04217 Protein of unknown function, DUF412 QMA0440_01036 PF03887 YfbU domain QMA0440_01038 PF02080 TrkA-C domain QMA0440_01038 PF03600 Citrate transporter QMA0440_01041 PF00155 Aminotransferase class I and II QMA0440_01042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_01042 PF03466 LysR substrate binding domain QMA0440_01043 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 QMA0440_01044 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit QMA0440_01045 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit QMA0440_01045 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit QMA0440_01047 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit QMA0440_01047 PF10531 SLBB domain QMA0440_01047 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region QMA0440_01048 PF00384 Molybdopterin oxidoreductase QMA0440_01048 PF01568 Molydopterin dinucleotide binding domain QMA0440_01048 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region QMA0440_01048 PF04879 Molybdopterin oxidoreductase Fe4S4 domain QMA0440_01049 PF00146 NADH dehydrogenase QMA0440_01050 PF12838 4Fe-4S dicluster domain QMA0440_01051 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 QMA0440_01052 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L QMA0440_01053 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus QMA0440_01053 PF00361 Proton-conducting membrane transporter QMA0440_01054 PF00361 Proton-conducting membrane transporter QMA0440_01055 PF00361 Proton-conducting membrane transporter QMA0440_01056 PF06496 Protein of unknown function (DUF1097) QMA0440_01057 PF05957 Bacterial protein of unknown function (DUF883) QMA0440_01058 PF00425 chorismate binding enzyme QMA0440_01059 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain QMA0440_01059 PF16582 Middle domain of thiamine pyrophosphate QMA0440_01059 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain QMA0440_01060 PF12697 Alpha/beta hydrolase family QMA0440_01061 PF00378 Enoyl-CoA hydratase/isomerase QMA0440_01062 PF13378 Enolase C-terminal domain-like QMA0440_01063 PF00501 AMP-binding enzyme QMA0440_01063 PF13193 AMP-binding enzyme C-terminal domain QMA0440_01064 PF00199 Catalase QMA0440_01064 PF06628 Catalase-related immune-responsive QMA0440_01065 PF07437 YfaZ precursor QMA0440_01066 PF03222 Tryptophan/tyrosine permease family QMA0440_01068 PF00535 Glycosyl transferase family 2 QMA0440_01069 PF04138 GtrA-like protein QMA0440_01070 PF00994 Probable molybdopterin binding domain QMA0440_01071 PF03974 Ecotin QMA0440_01073 PF00111 2Fe-2S iron-sulfur cluster binding domain QMA0440_01074 PF00268 Ribonucleotide reductase, small chain QMA0440_01075 PF03477 ATP cone domain QMA0440_01075 PF02867 Ribonucleotide reductase, barrel domain QMA0440_01075 PF00317 Ribonucleotide reductase, all-alpha domain QMA0440_01077 PF03989 DNA gyrase C-terminal domain, beta-propeller QMA0440_01077 PF00521 DNA gyrase/topoisomerase IV, subunit A QMA0440_01078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_01078 PF00072 Response regulator receiver domain QMA0440_01078 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_01078 PF09456 RcsC Alpha-Beta-Loop (ABL) QMA0440_01079 PF00196 Bacterial regulatory proteins, luxR family QMA0440_01079 PF00072 Response regulator receiver domain QMA0440_01080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_01080 PF01627 Hpt domain QMA0440_01080 PF16359 RcsD-ABL domain QMA0440_01081 PF07690 Major Facilitator Superfamily QMA0440_01082 PF00267 Gram-negative porin QMA0440_01085 PF13302 Acetyltransferase (GNAT) domain QMA0440_01086 PF00144 Beta-lactamase QMA0440_01087 PF12706 Beta-lactamase superfamily domain QMA0440_01088 PF06183 DinI-like family QMA0440_01090 PF00884 Sulfatase QMA0440_01090 PF11893 Domain of unknown function (DUF3413) QMA0440_01091 PF07208 Protein of unknown function (DUF1414) QMA0440_01092 PF04245 37-kD nucleoid-associated bacterial protein QMA0440_01093 PF01386 Ribosomal L25p family QMA0440_01094 PF00271 Helicase conserved C-terminal domain QMA0440_01094 PF04851 Type III restriction enzyme, res subunit QMA0440_01095 PF01479 S4 domain QMA0440_01095 PF00849 RNA pseudouridylate synthase QMA0440_01096 PF07690 Major Facilitator Superfamily QMA0440_01097 PF13989 YejG-like protein QMA0440_01098 PF00005 ABC transporter QMA0440_01098 PF08352 Oligopeptide/dipeptide transporter, C-terminal region QMA0440_01099 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_01099 PF12911 N-terminal TM domain of oligopeptide transport permease C QMA0440_01100 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_01101 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle QMA0440_01102 PF12792 CSS motif domain associated with EAL QMA0440_01102 PF00563 EAL domain QMA0440_01103 PF00877 NlpC/P60 family QMA0440_01104 PF01569 PAP2 superfamily QMA0440_01105 PF07683 Cobalamin synthesis protein cobW C-terminal domain QMA0440_01105 PF02492 CobW/HypB/UreG, nucleotide-binding domain QMA0440_01107 PF08125 Mannitol dehydrogenase C-terminal domain QMA0440_01107 PF01232 Mannitol dehydrogenase Rossmann domain QMA0440_01108 PF03786 D-mannonate dehydratase (UxuA) QMA0440_01109 PF09285 Elongation factor P, C-terminal QMA0440_01109 PF01132 Elongation factor P (EF-P) OB domain QMA0440_01109 PF08207 Elongation factor P (EF-P) KOW-like domain QMA0440_01110 PF03222 Tryptophan/tyrosine permease family QMA0440_01111 PF03692 Putative zinc- or iron-chelating domain QMA0440_01112 PF01568 Molydopterin dinucleotide binding domain QMA0440_01112 PF18364 Molybdopterin oxidoreductase N-terminal domain QMA0440_01112 PF00384 Molybdopterin oxidoreductase QMA0440_01113 PF03264 NapC/NirT cytochrome c family, N-terminal region QMA0440_01114 PF00293 NUDIX domain QMA0440_01115 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 QMA0440_01115 PF00381 PTS HPr component phosphorylation site QMA0440_01116 PF00294 pfkB family carbohydrate kinase QMA0440_01117 PF02378 Phosphotransferase system, EIIC QMA0440_01117 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit QMA0440_01118 PF01261 Xylose isomerase-like TIM barrel QMA0440_01119 PF03601 Conserved hypothetical protein 698 QMA0440_01121 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_01121 PF03466 LysR substrate binding domain QMA0440_01122 PF00324 Amino acid permease QMA0440_01124 PF01032 FecCD transport family QMA0440_01125 PF00005 ABC transporter QMA0440_01126 PF00593 TonB dependent receptor QMA0440_01126 PF07715 TonB-dependent Receptor Plug Domain QMA0440_01128 PF13520 Amino acid permease QMA0440_01129 PF08411 Exonuclease C-terminal QMA0440_01129 PF00929 Exonuclease QMA0440_01131 PF04632 Fusaric acid resistance protein family QMA0440_01132 PF04363 Protein of unknown function (DUF496) QMA0440_01135 PF08402 TOBE domain QMA0440_01135 PF00005 ABC transporter QMA0440_01136 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_01138 PF07690 Major Facilitator Superfamily QMA0440_01139 PF07730 Histidine kinase QMA0440_01139 PF05231 MASE1 QMA0440_01139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_01140 PF00072 Response regulator receiver domain QMA0440_01140 PF00196 Bacterial regulatory proteins, luxR family QMA0440_01141 PF00072 Response regulator receiver domain QMA0440_01141 PF12431 Transcriptional regulator QMA0440_01142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_01142 PF00989 PAS fold QMA0440_01142 PF17203 Single cache domain 3 QMA0440_01142 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain QMA0440_01143 PF08218 Citrate lyase ligase C-terminal domain QMA0440_01144 PF06857 Malonate decarboxylase delta subunit (MdcD) QMA0440_01145 PF03328 HpcH/HpaI aldolase/citrate lyase family QMA0440_01146 PF04223 Citrate lyase, alpha subunit (CitF) QMA0440_01147 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase QMA0440_01148 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase QMA0440_01149 PF00939 Sodium:sulfate symporter transmembrane region QMA0440_01150 PF17837 4'-phosphopantetheinyl transferase N-terminal domain QMA0440_01150 PF01648 4'-phosphopantetheinyl transferase superfamily QMA0440_01153 PF06167 Glucose-regulated metallo-peptidase M90 QMA0440_01165 PF00717 Peptidase S24-like QMA0440_01165 PF01381 Helix-turn-helix QMA0440_01171 PF04381 Putative exonuclease, RdgC QMA0440_01175 PF07102 Protein of unknown function (DUF1364) QMA0440_01182 PF04971 Bacteriophage P21 holin S QMA0440_01183 PF00959 Phage lysozyme QMA0440_01184 PF03245 Bacteriophage Rz lysis protein QMA0440_01196 PF01797 Transposase IS200 like QMA0440_01197 PF12323 Helix-turn-helix domain QMA0440_01197 PF07282 Putative transposase DNA-binding domain QMA0440_01197 PF01385 Probable transposase QMA0440_01207 PF13362 Toprim domain QMA0440_01207 PF18818 Metallopeptidase superfamily domain QMA0440_01207 PF08401 Domain of unknown function (DUF1738) QMA0440_01209 PF13276 HTH-like domain QMA0440_01209 PF00665 Integrase core domain QMA0440_01209 PF13333 Integrase core domain QMA0440_01210 PF13333 Integrase core domain QMA0440_01210 PF13276 HTH-like domain QMA0440_01210 PF00665 Integrase core domain QMA0440_01211 PF03526 Colicin E1 (microcin) immunity protein QMA0440_01212 PF01024 Colicin pore forming domain QMA0440_01218 PF14001 YdfZ protein QMA0440_01220 PF10777 Inner membrane protein YlaC QMA0440_01221 PF08659 KR domain QMA0440_01221 PF14765 Polyketide synthase dehydratase QMA0440_01221 PF02801 Beta-ketoacyl synthase, C-terminal domain QMA0440_01221 PF00109 Beta-ketoacyl synthase, N-terminal domain QMA0440_01221 PF16197 Ketoacyl-synthetase C-terminal extension QMA0440_01221 PF00107 Zinc-binding dehydrogenase QMA0440_01221 PF08240 Alcohol dehydrogenase GroES-like domain QMA0440_01221 PF00550 Phosphopantetheine attachment site QMA0440_01221 PF00698 Acyl transferase domain QMA0440_01222 PF02836 Glycosyl hydrolases family 2, TIM barrel domain QMA0440_01222 PF02837 Glycosyl hydrolases family 2, sugar binding domain QMA0440_01222 PF16353 Domain of unknown function(DUF4981) QMA0440_01222 PF02929 Beta galactosidase small chain QMA0440_01222 PF00703 Glycosyl hydrolases family 2 QMA0440_01223 PF00356 Bacterial regulatory proteins, lacI family QMA0440_01224 PF00313 'Cold-shock' DNA-binding domain QMA0440_01225 PF10781 Dextransucrase DSRB QMA0440_01226 PF02203 Tar ligand binding domain homologue QMA0440_01226 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain QMA0440_01226 PF00672 HAMP domain QMA0440_01227 PF02308 MgtC family QMA0440_01228 PF00582 Universal stress protein family QMA0440_01229 PF05247 Flagellar transcriptional activator (FlhD) QMA0440_01230 PF05280 Flagellar transcriptional activator (FlhC) QMA0440_01231 PF01618 MotA/TolQ/ExbB proton channel family QMA0440_01232 PF13677 Membrane MotB of proton-channel complex MotA/MotB QMA0440_01232 PF00691 OmpA family QMA0440_01233 PF01627 Hpt domain QMA0440_01233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_01233 PF02895 Signal transducing histidine kinase, homodimeric domain QMA0440_01233 PF09078 CheY binding QMA0440_01233 PF01584 CheW-like domain QMA0440_01234 PF01584 CheW-like domain QMA0440_01235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain QMA0440_01235 PF00672 HAMP domain QMA0440_01235 PF02203 Tar ligand binding domain homologue QMA0440_01236 PF02203 Tar ligand binding domain homologue QMA0440_01236 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain QMA0440_01236 PF00672 HAMP domain QMA0440_01237 PF01739 CheR methyltransferase, SAM binding domain QMA0440_01237 PF03705 CheR methyltransferase, all-alpha domain QMA0440_01238 PF00072 Response regulator receiver domain QMA0440_01238 PF01339 CheB methylesterase QMA0440_01239 PF00072 Response regulator receiver domain QMA0440_01240 PF04344 Chemotaxis phosphatase, CheZ QMA0440_01246 PF00419 Fimbrial protein QMA0440_01248 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain QMA0440_01248 PF02753 Pili assembly chaperone PapD, C-terminal domain QMA0440_01249 PF13953 PapC C-terminal domain QMA0440_01249 PF13954 PapC N-terminal domain QMA0440_01249 PF00577 Outer membrane usher protein QMA0440_01251 PF00419 Fimbrial protein QMA0440_01253 PF00196 Bacterial regulatory proteins, luxR family QMA0440_01255 PF01312 FlhB HrpN YscU SpaS Family QMA0440_01256 PF00771 FHIPEP family QMA0440_01257 PF06366 Flagellar protein FlhE QMA0440_01259 PF05130 FlgN protein QMA0440_01260 PF04316 Anti-sigma-28 factor, FlgM QMA0440_01261 PF13144 Chaperone for flagella basal body P-ring formation QMA0440_01261 PF17656 FlgA N-terminal domain QMA0440_01262 PF00460 Flagella basal body rod protein QMA0440_01263 PF00460 Flagella basal body rod protein QMA0440_01263 PF06429 Flagellar basal body rod FlgEFG protein C-terminal QMA0440_01264 PF03963 Flagellar hook capping protein - N-terminal region QMA0440_01264 PF13860 FlgD Ig-like domain QMA0440_01264 PF13861 FlgD Tudor-like domain QMA0440_01265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal QMA0440_01265 PF00460 Flagella basal body rod protein QMA0440_01265 PF07559 Flagellar basal body protein FlaE QMA0440_01266 PF00460 Flagella basal body rod protein QMA0440_01266 PF06429 Flagellar basal body rod FlgEFG protein C-terminal QMA0440_01267 PF06429 Flagellar basal body rod FlgEFG protein C-terminal QMA0440_01267 PF00460 Flagella basal body rod protein QMA0440_01268 PF02107 Flagellar L-ring protein QMA0440_01269 PF02119 Flagellar P-ring protein QMA0440_01270 PF10135 Rod binding protein QMA0440_01270 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase QMA0440_01271 PF06429 Flagellar basal body rod FlgEFG protein C-terminal QMA0440_01271 PF00460 Flagella basal body rod protein QMA0440_01272 PF00669 Bacterial flagellin N-terminal helical region QMA0440_01273 PF01311 Bacterial export proteins, family 1 QMA0440_01274 PF01313 Bacterial export proteins, family 3 QMA0440_01275 PF00813 FliP family QMA0440_01276 PF04347 Flagellar biosynthesis protein, FliO QMA0440_01277 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term QMA0440_01277 PF16973 Flagellar motor switch protein FliN N-terminal QMA0440_01278 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term QMA0440_01278 PF02154 Flagellar motor switch protein FliM QMA0440_01279 PF03748 Flagellar basal body-associated protein FliL QMA0440_01280 PF02120 Flagellar hook-length control protein FliK QMA0440_01281 PF02050 Flagellar FliJ protein QMA0440_01282 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain QMA0440_01282 PF18269 T3SS EscN ATPase C-terminal domain QMA0440_01283 PF02108 Flagellar assembly protein FliH QMA0440_01284 PF01706 FliG C-terminal domain QMA0440_01284 PF14841 FliG middle domain QMA0440_01284 PF14842 FliG N-terminal domain QMA0440_01285 PF08345 Flagellar M-ring protein C-terminal QMA0440_01285 PF01514 Secretory protein of YscJ/FliF family QMA0440_01286 PF02049 Flagellar hook-basal body complex protein FliE QMA0440_01288 PF01223 DNA/RNA non-specific endonuclease QMA0440_01289 PF02254 TrkA-N domain QMA0440_01289 PF07885 Ion channel QMA0440_01290 PF01966 HD domain QMA0440_01291 PF12833 Helix-turn-helix domain QMA0440_01292 PF05400 Flagellar protein FliT QMA0440_01293 PF02561 Flagellar protein FliS QMA0440_01294 PF07196 Flagellin hook IN motif QMA0440_01294 PF07195 Flagellar hook-associated protein 2 C-terminus QMA0440_01294 PF02465 Flagellar hook-associated protein 2 N-terminus QMA0440_01295 PF00700 Bacterial flagellin C-terminal helical region QMA0440_01295 PF00669 Bacterial flagellin N-terminal helical region QMA0440_01295 PF08884 Flagellin D3 domain QMA0440_01296 PF00669 Bacterial flagellin N-terminal helical region QMA0440_01296 PF08884 Flagellin D3 domain QMA0440_01296 PF00700 Bacterial flagellin C-terminal helical region QMA0440_01297 PF04545 Sigma-70, region 4 QMA0440_01297 PF04539 Sigma-70 region 3 QMA0440_01297 PF04542 Sigma-70 region 2 QMA0440_01298 PF02899 Phage integrase, N-terminal SAM-like domain QMA0440_01299 PF00291 Pyridoxal-phosphate dependent enzyme QMA0440_01303 PF00171 Aldehyde dehydrogenase family QMA0440_01303 PF14850 DNA-binding domain of Proline dehydrogenase QMA0440_01303 PF18327 Proline utilization A proline dehydrogenase N-terminal domain QMA0440_01303 PF01619 Proline dehydrogenase QMA0440_01304 PF00474 Sodium:solute symporter family QMA0440_01305 PF00486 Transcriptional regulatory protein, C terminal QMA0440_01305 PF18500 CadC C-terminal domain 1 QMA0440_01306 PF13520 Amino acid permease QMA0440_01307 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain QMA0440_01307 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain QMA0440_01307 PF01276 Orn/Lys/Arg decarboxylase, major domain QMA0440_01308 PF00324 Amino acid permease QMA0440_01311 PF10769 Protein of unknown function (DUF2594) QMA0440_01312 PF00072 Response regulator receiver domain QMA0440_01312 PF00196 Bacterial regulatory proteins, luxR family QMA0440_01313 PF01541 GIY-YIG catalytic domain QMA0440_01313 PF08459 UvrC Helix-hairpin-helix N-terminal QMA0440_01313 PF02151 UvrB/uvrC motif QMA0440_01314 PF01066 CDP-alcohol phosphatidyltransferase QMA0440_01318 PF13333 Integrase core domain QMA0440_01318 PF00665 Integrase core domain QMA0440_01318 PF13276 HTH-like domain QMA0440_01319 PF00672 HAMP domain QMA0440_01319 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain QMA0440_01319 PF02203 Tar ligand binding domain homologue QMA0440_01321 PF00005 ABC transporter QMA0440_01322 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_01325 PF00034 Cytochrome c QMA0440_01325 PF13442 Cytochrome C oxidase, cbb3-type, subunit III QMA0440_01327 PF13673 Acetyltransferase (GNAT) domain QMA0440_01332 PF04960 Glutaminase QMA0440_01333 PF13520 Amino acid permease QMA0440_01334 PF00282 Pyridoxal-dependent decarboxylase conserved domain QMA0440_01335 PF00849 RNA pseudouridylate synthase QMA0440_01338 PF13520 Amino acid permease QMA0440_01341 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) QMA0440_01343 PF01479 S4 domain QMA0440_01343 PF00849 RNA pseudouridylate synthase QMA0440_01344 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit QMA0440_01345 PF02378 Phosphotransferase system, EIIC QMA0440_01346 PF00232 Glycosyl hydrolase family 1 QMA0440_01347 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit QMA0440_01348 PF07883 Cupin domain QMA0440_01348 PF12833 Helix-turn-helix domain QMA0440_01349 PF04794 YdjC-like protein QMA0440_01352 PF00313 'Cold-shock' DNA-binding domain QMA0440_01353 PF00313 'Cold-shock' DNA-binding domain QMA0440_01354 PF08241 Methyltransferase domain QMA0440_01357 PF07478 D-ala D-ala ligase C-terminus QMA0440_01357 PF01820 D-ala D-ala ligase N-terminus QMA0440_01358 PF06411 HdeA/HdeB family QMA0440_01360 PF03372 Endonuclease/Exonuclease/phosphatase family QMA0440_01361 PF00360 Phytochrome region QMA0440_01361 PF01590 GAF domain QMA0440_01361 PF00563 EAL domain QMA0440_01361 PF00990 Diguanylate cyclase, GGDEF domain QMA0440_01363 PF00005 ABC transporter QMA0440_01363 PF00664 ABC transporter transmembrane region QMA0440_01364 PF13520 Amino acid permease QMA0440_01366 PF12833 Helix-turn-helix domain QMA0440_01368 PF10964 Protein of unknown function (DUF2766) QMA0440_01369 PF13996 YobH-like protein QMA0440_01370 PF13998 MgrB protein QMA0440_01371 PF13974 YebO-like protein QMA0440_01374 PF00324 Amino acid permease QMA0440_01375 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP QMA0440_01376 PF10736 Protein of unknown function (DUF2627) QMA0440_01377 PF00313 'Cold-shock' DNA-binding domain QMA0440_01379 PF03717 Penicillin-binding Protein dimerisation domain QMA0440_01379 PF00905 Penicillin binding protein transpeptidase domain QMA0440_01380 PF13847 Methyltransferase domain QMA0440_01384 PF07690 Major Facilitator Superfamily QMA0440_01385 PF00550 Phosphopantetheine attachment site QMA0440_01385 PF00668 Condensation domain QMA0440_01385 PF00501 AMP-binding enzyme QMA0440_01385 PF13193 AMP-binding enzyme C-terminal domain QMA0440_01386 PF05199 GMC oxidoreductase QMA0440_01386 PF00732 GMC oxidoreductase QMA0440_01388 PF02771 Acyl-CoA dehydrogenase, N-terminal domain QMA0440_01388 PF00441 Acyl-CoA dehydrogenase, C-terminal domain QMA0440_01388 PF02770 Acyl-CoA dehydrogenase, middle domain QMA0440_01391 PF02441 Flavoprotein QMA0440_01392 PF02659 Putative manganese efflux pump QMA0440_01393 PF06173 Protein of unknown function (DUF986) QMA0440_01394 PF03613 PTS system mannose/fructose/sorbose family IID component QMA0440_01395 PF03609 PTS system sorbose-specific iic component QMA0440_01396 PF03610 PTS system fructose IIA component QMA0440_01396 PF03830 PTS system sorbose subfamily IIB component QMA0440_01397 PF03471 Transporter associated domain QMA0440_01397 PF03741 Integral membrane protein TerC family QMA0440_01398 PF03315 Serine dehydratase beta chain QMA0440_01398 PF03313 Serine dehydratase alpha chain QMA0440_01399 PF00293 NUDIX domain QMA0440_01400 PF00425 chorismate binding enzyme QMA0440_01400 PF04715 Anthranilate synthase component I, N terminal region QMA0440_01401 PF03701 Uncharacterised protein family (UPF0181) QMA0440_01402 PF02222 ATP-grasp domain QMA0440_01403 PF00270 DEAD/DEAH box helicase QMA0440_01403 PF03880 DbpA RNA binding domain QMA0440_01403 PF00271 Helicase conserved C-terminal domain QMA0440_01404 PF07130 YebG protein QMA0440_01406 PF13995 YebF-like protein QMA0440_01408 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain QMA0440_01408 PF00326 Prolyl oligopeptidase family QMA0440_01409 PF00929 Exonuclease QMA0440_01411 PF00561 alpha/beta hydrolase fold QMA0440_01412 PF06440 DNA polymerase III, theta subunit QMA0440_01413 PF00210 Ferritin-like domain QMA0440_01414 PF04234 CopC domain QMA0440_01415 PF05425 Copper resistance protein D QMA0440_01416 PF10709 Protein of unknown function (DUF2511) QMA0440_01436 PF01381 Helix-turn-helix QMA0440_01436 PF00717 Peptidase S24-like QMA0440_01443 PF04381 Putative exonuclease, RdgC QMA0440_01445 PF05869 DNA N-6-adenine-methyltransferase (Dam) QMA0440_01453 PF04971 Bacteriophage P21 holin S QMA0440_01454 PF00959 Phage lysozyme QMA0440_01470 PF01527 Transposase QMA0440_01491 PF00144 Beta-lactamase QMA0440_01495 PF03783 Curli production assembly/transport component CsgG QMA0440_01497 PF05643 Putative bacterial lipoprotein (DUF799) QMA0440_01502 PF07351 Protein of unknown function (DUF1480) QMA0440_01503 PF00990 Diguanylate cyclase, GGDEF domain QMA0440_01503 PF00563 EAL domain QMA0440_01503 PF00360 Phytochrome region QMA0440_01503 PF01590 GAF domain QMA0440_01504 PF02470 MlaD protein QMA0440_01505 PF04403 Paraquat-inducible protein A QMA0440_01506 PF13185 GAF domain QMA0440_01507 PF04352 ProQ/FINO family QMA0440_01507 PF17516 ProQ C-terminal domain QMA0440_01508 PF00595 PDZ domain QMA0440_01508 PF03572 Peptidase family S41 QMA0440_01508 PF11818 C-terminal domain of tail specific protease (DUF3340) QMA0440_01508 PF17804 Tail specific protease N-terminal domain QMA0440_01509 PF01435 Peptidase family M48 QMA0440_01510 PF07690 Major Facilitator Superfamily QMA0440_01511 PF09339 IclR helix-turn-helix domain QMA0440_01511 PF01614 Bacterial transcriptional regulator QMA0440_01512 PF01510 N-acetylmuramoyl-L-alanine amidase QMA0440_01514 PF04307 LexA-binding, inner membrane-associated putative hydrolase QMA0440_01515 PF13419 Haloacid dehalogenase-like hydrolase QMA0440_01516 PF14002 YniB-like protein QMA0440_01518 PF00950 ABC 3 transport family QMA0440_01519 PF00950 ABC 3 transport family QMA0440_01520 PF00005 ABC transporter QMA0440_01521 PF01297 Zinc-uptake complex component A periplasmic QMA0440_01522 PF01464 Transglycosylase SLT domain QMA0440_01523 PF01914 MarC family integral membrane protein QMA0440_01531 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain QMA0440_01531 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) QMA0440_01531 PF02824 TGS domain QMA0440_01531 PF03129 Anticodon binding domain QMA0440_01532 PF00707 Translation initiation factor IF-3, C-terminal domain QMA0440_01532 PF05198 Translation initiation factor IF-3, N-terminal domain QMA0440_01533 PF01632 Ribosomal protein L35 QMA0440_01534 PF00453 Ribosomal protein L20 QMA0440_01535 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain QMA0440_01535 PF01409 tRNA synthetases class II core domain (F) QMA0440_01536 PF03483 B3/4 domain QMA0440_01536 PF03484 tRNA synthetase B5 domain QMA0440_01536 PF03147 Ferredoxin-fold anticodon binding domain QMA0440_01536 PF01588 Putative tRNA binding domain QMA0440_01536 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain QMA0440_01537 PF00216 Bacterial DNA-binding protein QMA0440_01539 PF04606 Ogr/Delta-like zinc finger QMA0440_01542 PF02661 Fic/DOC family QMA0440_01543 PF02661 Fic/DOC family QMA0440_01546 PF00589 Phage integrase family QMA0440_01546 PF02899 Phage integrase, N-terminal SAM-like domain QMA0440_01547 PF01032 FecCD transport family QMA0440_01548 PF00005 ABC transporter QMA0440_01549 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family QMA0440_01550 PF00535 Glycosyl transferase family 2 QMA0440_01551 PF01370 NAD dependent epimerase/dehydratase family QMA0440_01551 PF02911 Formyl transferase, C-terminal domain QMA0440_01551 PF00551 Formyl transferase QMA0440_01552 PF01522 Polysaccharide deacetylase QMA0440_01553 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase QMA0440_01554 PF00892 EamA-like transporter family QMA0440_01556 PF00877 NlpC/P60 family QMA0440_01557 PF10437 Bacterial lipoate protein ligase C-terminus QMA0440_01557 PF03099 Biotin/lipoate A/B protein ligase family QMA0440_01558 PF02696 Uncharacterized ACR, YdiU/UPF0061 family QMA0440_01559 PF00005 ABC transporter QMA0440_01560 PF01032 FecCD transport family QMA0440_01561 PF01497 Periplasmic binding protein QMA0440_01562 PF05171 Haemin-degrading HemS.ChuX domain QMA0440_01563 PF00593 TonB dependent receptor QMA0440_01563 PF07715 TonB-dependent Receptor Plug Domain QMA0440_01564 PF00793 DAHP synthetase I family QMA0440_01565 PF03618 Kinase/pyrophosphorylase QMA0440_01566 PF02896 PEP-utilising enzyme, TIM barrel domain QMA0440_01566 PF00391 PEP-utilising enzyme, mobile domain QMA0440_01566 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain QMA0440_01567 PF01594 AI-2E family transporter QMA0440_01568 PF01565 FAD binding domain QMA0440_01568 PF13183 4Fe-4S dicluster domain QMA0440_01568 PF02913 FAD linked oxidases, C-terminal domain QMA0440_01569 PF03061 Thioesterase superfamily QMA0440_01571 PF01521 Iron-sulphur cluster biosynthesis QMA0440_01572 PF01458 Uncharacterized protein family (UPF0051) QMA0440_01573 PF00005 ABC transporter QMA0440_01574 PF01458 Uncharacterized protein family (UPF0051) QMA0440_01575 PF00266 Aminotransferase class-V QMA0440_01576 PF02657 Fe-S metabolism associated domain QMA0440_01577 PF01476 LysM domain QMA0440_01577 PF03734 L,D-transpeptidase catalytic domain QMA0440_01577 PF17969 L,D-transpeptidase C-terminal domain QMA0440_01578 PF04728 Lipoprotein leucine-zipper QMA0440_01579 PF00224 Pyruvate kinase, barrel domain QMA0440_01579 PF02887 Pyruvate kinase, alpha/beta domain QMA0440_01583 PF01554 MatE QMA0440_01584 PF00677 Lumazine binding domain QMA0440_01586 PF07690 Major Facilitator Superfamily QMA0440_01587 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_01587 PF03466 LysR substrate binding domain QMA0440_01588 PF00356 Bacterial regulatory proteins, lacI family QMA0440_01590 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain QMA0440_01590 PF02777 Iron/manganese superoxide dismutases, C-terminal domain QMA0440_01591 PF00877 NlpC/P60 family QMA0440_01592 PF00462 Glutaredoxin QMA0440_01593 PF00929 Exonuclease QMA0440_01594 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily QMA0440_01595 PF00724 NADH:flavin oxidoreductase / NADH oxidase family QMA0440_01596 PF00440 Bacterial regulatory proteins, tetR family QMA0440_01596 PF16925 Tetracyclin repressor-like, C-terminal domain QMA0440_01597 PF00884 Sulfatase QMA0440_01597 PF08019 Phosphoethanolamine transferase EptA/EptB QMA0440_01598 PF06945 Protein of unknown function (DUF1289) QMA0440_01599 PF00248 Aldo/keto reductase family QMA0440_01600 PF01047 MarR family QMA0440_01601 PF05433 Glycine zipper 2TM domain QMA0440_01602 PF03702 Anhydro-N-acetylmuramic acid kinase QMA0440_01603 PF01243 Pyridoxamine 5'-phosphate oxidase QMA0440_01603 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region QMA0440_01604 PF00579 tRNA synthetases class I (W and Y) QMA0440_01604 PF01479 S4 domain QMA0440_01605 PF08543 Phosphomethylpyrimidine kinase QMA0440_01606 PF02798 Glutathione S-transferase, N-terminal domain QMA0440_01606 PF00043 Glutathione S-transferase, C-terminal domain QMA0440_01607 PF11656 YjbD family (DUF3811) QMA0440_01609 PF04893 Yip1 domain QMA0440_01611 PF00226 DnaJ domain QMA0440_01611 PF01556 DnaJ C terminal domain QMA0440_01613 PF00854 POT family QMA0440_01615 PF00005 ABC transporter QMA0440_01616 PF00005 ABC transporter QMA0440_01616 PF08352 Oligopeptide/dipeptide transporter, C-terminal region QMA0440_01617 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_01617 PF12911 N-terminal TM domain of oligopeptide transport permease C QMA0440_01618 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_01619 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle QMA0440_01620 PF02917 Pertussis toxin, subunit 1 QMA0440_01622 PF00158 Sigma-54 interaction domain QMA0440_01622 PF02954 Bacterial regulatory protein, Fis family QMA0440_01623 PF04012 PspA/IM30 family QMA0440_01624 PF06667 Phage shock protein B QMA0440_01625 PF04024 PspC domain QMA0440_01626 PF09584 Phage shock protein PspD (Phageshock_PspD) QMA0440_01627 PF04317 YcjX-like family, DUF463 QMA0440_01628 PF05128 Domain of unknown function (DUF697) QMA0440_01631 PF18024 Helix-turn-helix domain QMA0440_01631 PF00158 Sigma-54 interaction domain QMA0440_01632 PF08534 Redoxin QMA0440_01633 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain QMA0440_01633 PF13378 Enolase C-terminal domain-like QMA0440_01634 PF00246 Zinc carboxypeptidase QMA0440_01635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle QMA0440_01636 PF01544 CorA-like Mg2+ transporter protein QMA0440_01637 PF01171 PP-loop family QMA0440_01638 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain QMA0440_01638 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg QMA0440_01638 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase QMA0440_01638 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II QMA0440_01638 PF10371 Domain of unknown function QMA0440_01639 PF00893 Small Multidrug Resistance protein QMA0440_01640 PF02308 MgtC family QMA0440_01641 PF03891 Domain of unknown function (DUF333) QMA0440_01642 PF03724 META domain QMA0440_01643 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain QMA0440_01643 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain QMA0440_01644 PF11739 Dicarboxylate transport QMA0440_01646 PF13617 YnbE-like lipoprotein QMA0440_01647 PF07027 Protein of unknown function (DUF1318) QMA0440_01648 PF02525 Flavodoxin-like fold QMA0440_01649 PF11898 Domain of unknown function (DUF3418) QMA0440_01649 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold QMA0440_01649 PF00271 Helicase conserved C-terminal domain QMA0440_01649 PF04408 Helicase associated domain (HA2) QMA0440_01649 PF00270 DEAD/DEAH box helicase QMA0440_01650 PF00089 Trypsin QMA0440_01652 PF01161 Phosphatidylethanolamine-binding protein QMA0440_01653 PF12833 Helix-turn-helix domain QMA0440_01654 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily QMA0440_01655 PF00080 Copper/zinc superoxide dismutase (SODC) QMA0440_01656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_01656 PF00672 HAMP domain QMA0440_01656 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_01657 PF00072 Response regulator receiver domain QMA0440_01657 PF00486 Transcriptional regulatory protein, C terminal QMA0440_01659 PF13520 Amino acid permease QMA0440_01661 PF07338 Protein of unknown function (DUF1471) QMA0440_01662 PF05222 Alanine dehydrogenase/PNT, N-terminal domain QMA0440_01662 PF01262 Alanine dehydrogenase/PNT, C-terminal domain QMA0440_01662 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch QMA0440_01663 PF02233 NAD(P) transhydrogenase beta subunit QMA0440_01664 PF01261 Xylose isomerase-like TIM barrel QMA0440_01665 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family QMA0440_01666 PF00596 Class II Aldolase and Adducin N-terminal domain QMA0440_01667 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 QMA0440_01668 PF03611 PTS system sugar-specific permease component QMA0440_01669 PF00455 DeoR C terminal sensor domain QMA0440_01669 PF08220 DeoR-like helix-turn-helix domain QMA0440_01671 PF00582 Universal stress protein family QMA0440_01672 PF13545 Crp-like helix-turn-helix domain QMA0440_01672 PF00027 Cyclic nucleotide-binding domain QMA0440_01673 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain QMA0440_01673 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain QMA0440_01674 PF06445 GyrI-like small molecule binding domain QMA0440_01677 PF13419 Haloacid dehalogenase-like hydrolase QMA0440_01682 PF00753 Metallo-beta-lactamase superfamily QMA0440_01682 PF14864 Alkyl sulfatase C-terminal QMA0440_01682 PF14863 Alkyl sulfatase dimerisation QMA0440_01688 PF01048 Phosphorylase superfamily QMA0440_01688 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus QMA0440_01693 PF00106 short chain dehydrogenase QMA0440_01694 PF02694 Uncharacterised BCR, YnfA/UPF0060 family QMA0440_01695 PF06932 Protein of unknown function (DUF1283) QMA0440_01696 PF06649 Protein of unknown function (DUF1161) QMA0440_01697 PF00654 Voltage gated chloride channel QMA0440_01699 PF00480 ROK family QMA0440_01700 PF05472 DNA replication terminus site-binding protein (Ter protein) QMA0440_01701 PF10415 Fumarase C C-terminus QMA0440_01701 PF00206 Lyase QMA0440_01703 PF01238 Phosphomannose isomerase type I QMA0440_01704 PF06097 Bacterial protein of unknown function (DUF945) QMA0440_01705 PF00962 Adenosine/AMP deaminase QMA0440_01706 PF13593 SBF-like CPA transporter family (DUF4137) QMA0440_01707 PF01408 Oxidoreductase family, NAD-binding Rossmann fold QMA0440_01707 PF02894 Oxidoreductase family, C-terminal alpha/beta domain QMA0440_01708 PF03848 Tellurite resistance protein TehB QMA0440_01708 PF09313 Domain of unknown function (DUF1971) QMA0440_01709 PF01268 Formate--tetrahydrofolate ligase QMA0440_01710 PF10754 Protein of unknown function (DUF2569) QMA0440_01711 PF02508 Rnf-Nqr subunit, membrane protein QMA0440_01712 PF04060 Putative Fe-S cluster QMA0440_01713 PF13237 4Fe-4S dicluster domain QMA0440_01713 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit QMA0440_01713 PF13375 RnfC Barrel sandwich hybrid domain QMA0440_01713 PF10531 SLBB domain QMA0440_01714 PF06445 GyrI-like small molecule binding domain QMA0440_01714 PF12833 Helix-turn-helix domain QMA0440_01715 PF03116 NQR2, RnfD, RnfE family QMA0440_01716 PF04205 FMN-binding domain QMA0440_01717 PF02508 Rnf-Nqr subunit, membrane protein QMA0440_01718 PF10576 Iron-sulfur binding domain of endonuclease III QMA0440_01718 PF00633 Helix-hairpin-helix motif QMA0440_01718 PF00730 HhH-GPD superfamily base excision DNA repair protein QMA0440_01719 PF08206 Ribonuclease B OB domain QMA0440_01719 PF00575 S1 RNA binding domain QMA0440_01719 PF00773 RNB domain QMA0440_01720 PF00563 EAL domain QMA0440_01720 PF00990 Diguanylate cyclase, GGDEF domain QMA0440_01720 PF13426 PAS domain QMA0440_01720 PF08448 PAS fold QMA0440_01720 PF08447 PAS fold QMA0440_01720 PF05231 MASE1 QMA0440_01721 PF00923 Transaldolase/Fructose-6-phosphate aldolase QMA0440_01722 PF05433 Glycine zipper 2TM domain QMA0440_01723 PF01253 Translation initiation factor SUI1 QMA0440_01724 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family QMA0440_01725 PF07338 Protein of unknown function (DUF1471) QMA0440_01727 PF18073 Rubredoxin metal binding domain QMA0440_01728 PF06305 Lipopolysaccharide assembly protein A domain QMA0440_01729 PF01569 PAP2 superfamily QMA0440_01730 PF00925 GTP cyclohydrolase II QMA0440_01731 PF00694 Aconitase C-terminal domain QMA0440_01731 PF00330 Aconitase family (aconitate hydratase) QMA0440_01734 PF03466 LysR substrate binding domain QMA0440_01734 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_01735 PF08272 Topoisomerase I zinc-ribbon-like QMA0440_01735 PF01751 Toprim domain QMA0440_01735 PF01396 Topoisomerase DNA binding C4 zinc finger QMA0440_01735 PF01131 DNA topoisomerase QMA0440_01736 PF10692 Protein of unknown function (DUF2498) QMA0440_01737 PF08496 Peptidase family S49 N-terminal QMA0440_01737 PF01343 Peptidase family S49 QMA0440_01738 PF00106 short chain dehydrogenase QMA0440_01739 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP QMA0440_01740 PF00849 RNA pseudouridylate synthase QMA0440_01740 PF01479 S4 domain QMA0440_01741 PF01300 Telomere recombination QMA0440_01742 PF02811 PHP domain QMA0440_01743 PF04715 Anthranilate synthase component I, N terminal region QMA0440_01743 PF00425 chorismate binding enzyme QMA0440_01744 PF00117 Glutamine amidotransferase class-I QMA0440_01745 PF00591 Glycosyl transferase family, a/b domain QMA0440_01745 PF02885 Glycosyl transferase family, helical bundle domain QMA0440_01746 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase QMA0440_01746 PF00218 Indole-3-glycerol phosphate synthase QMA0440_01747 PF00291 Pyridoxal-phosphate dependent enzyme QMA0440_01748 PF00290 Tryptophan synthase alpha chain QMA0440_01750 PF03922 OmpW family QMA0440_01751 PF03692 Putative zinc- or iron-chelating domain QMA0440_01753 PF01740 STAS domain QMA0440_01753 PF00916 Sulfate permease family QMA0440_01754 PF04279 Intracellular septation protein A QMA0440_01755 PF03061 Thioesterase superfamily QMA0440_01756 PF03544 Gram-negative bacterial TonB protein C-terminal QMA0440_01760 PF13953 PapC C-terminal domain QMA0440_01760 PF13954 PapC N-terminal domain QMA0440_01760 PF00577 Outer membrane usher protein QMA0440_01761 PF02753 Pili assembly chaperone PapD, C-terminal domain QMA0440_01761 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain QMA0440_01763 PF00486 Transcriptional regulatory protein, C terminal QMA0440_01766 PF03795 YCII-related domain QMA0440_01770 PF13396 Phospholipase_D-nuclease N-terminal QMA0440_01770 PF13091 PLD-like domain QMA0440_01771 PF04269 Protein of unknown function, DUF440 QMA0440_01772 PF08352 Oligopeptide/dipeptide transporter, C-terminal region QMA0440_01772 PF00005 ABC transporter QMA0440_01773 PF00005 ABC transporter QMA0440_01773 PF08352 Oligopeptide/dipeptide transporter, C-terminal region QMA0440_01774 PF12911 N-terminal TM domain of oligopeptide transport permease C QMA0440_01774 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_01775 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_01776 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle QMA0440_01777 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle QMA0440_01778 PF01914 MarC family integral membrane protein QMA0440_01779 PF00171 Aldehyde dehydrogenase family QMA0440_01779 PF00465 Iron-containing alcohol dehydrogenase QMA0440_01781 PF00265 Thymidine kinase QMA0440_01782 PF00816 H-NS histone family QMA0440_01783 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain QMA0440_01783 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain QMA0440_01783 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain QMA0440_01784 PF00072 Response regulator receiver domain QMA0440_01785 PF01734 Patatin-like phospholipase QMA0440_01786 PF02810 SEC-C motif QMA0440_01787 PF00551 Formyl transferase QMA0440_01787 PF01842 ACT domain QMA0440_01790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_01790 PF03466 LysR substrate binding domain QMA0440_01792 PF03372 Endonuclease/Exonuclease/phosphatase family QMA0440_01793 PF00293 NUDIX domain QMA0440_01794 PF07383 Protein of unknown function (DUF1496) QMA0440_01795 PF01751 Toprim domain QMA0440_01795 PF01131 DNA topoisomerase QMA0440_01796 PF00586 AIR synthase related protein, N-terminal domain QMA0440_01796 PF02769 AIR synthase related protein, C-terminal domain QMA0440_01797 PF00881 Nitroreductase family QMA0440_01798 PF01343 Peptidase family S49 QMA0440_01799 PF00710 Asparaginase, N-terminal QMA0440_01799 PF17763 Glutaminase/Asparaginase C-terminal domain QMA0440_01800 PF00857 Isochorismatase family QMA0440_01801 PF07023 Protein of unknown function (DUF1315) QMA0440_01802 PF01641 SelR domain QMA0440_01803 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QMA0440_01803 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain QMA0440_01804 PF01263 Aldose 1-epimerase QMA0440_01805 PF00884 Sulfatase QMA0440_01806 PF06629 MltA-interacting protein MipA QMA0440_01807 PF06798 PrkA serine protein kinase C-terminal domain QMA0440_01807 PF08298 PrkA AAA domain QMA0440_01808 PF04285 Protein of unknown function (DUF444) QMA0440_01809 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain QMA0440_01809 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain QMA0440_01809 PF00205 Thiamine pyrophosphate enzyme, central domain QMA0440_01810 PF03306 Alpha-acetolactate decarboxylase QMA0440_01811 PF03466 LysR substrate binding domain QMA0440_01811 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_01812 PF00563 EAL domain QMA0440_01812 PF00990 Diguanylate cyclase, GGDEF domain QMA0440_01812 PF13426 PAS domain QMA0440_01814 PF07690 Major Facilitator Superfamily QMA0440_01815 PF00842 Alanine racemase, C-terminal domain QMA0440_01815 PF01168 Alanine racemase, N-terminal domain QMA0440_01816 PF01266 FAD dependent oxidoreductase QMA0440_01817 PF04293 SpoVR like protein QMA0440_01818 PF00392 Bacterial regulatory proteins, gntR family QMA0440_01818 PF07840 FadR C-terminal domain QMA0440_01819 PF06450 Bacterial Na+/H+ antiporter B (NhaB) QMA0440_01820 PF02600 Disulfide bond formation protein DsbB QMA0440_01823 PF03692 Putative zinc- or iron-chelating domain QMA0440_01824 PF01557 Fumarylacetoacetate (FAA) hydrolase family QMA0440_01825 PF05166 YcgL domain QMA0440_01826 PF05209 Septum formation inhibitor MinC, N-terminal domain QMA0440_01826 PF03775 Septum formation inhibitor MinC, C-terminal domain QMA0440_01827 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain QMA0440_01828 PF03776 Septum formation topological specificity factor MinE QMA0440_01829 PF00570 HRDC domain QMA0440_01829 PF01612 3'-5' exonuclease QMA0440_01830 PF00501 AMP-binding enzyme QMA0440_01830 PF13193 AMP-binding enzyme C-terminal domain QMA0440_01831 PF03843 Outer membrane lipoprotein Slp family QMA0440_01832 PF00814 Glycoprotease family QMA0440_01833 PF04851 Type III restriction enzyme, res subunit QMA0440_01833 PF13307 Helicase C-terminal domain QMA0440_01834 PF01042 Endoribonuclease L-PSP QMA0440_01835 PF00893 Small Multidrug Resistance protein QMA0440_01836 PF00893 Small Multidrug Resistance protein QMA0440_01837 PF01081 KDPG and KHG aldolase QMA0440_01838 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain QMA0440_01838 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain QMA0440_01839 PF01418 Helix-turn-helix domain, rpiR family QMA0440_01839 PF01380 SIS domain QMA0440_01840 PF00224 Pyruvate kinase, barrel domain QMA0440_01840 PF02887 Pyruvate kinase, alpha/beta domain QMA0440_01841 PF03279 Bacterial lipid A biosynthesis acyltransferase QMA0440_01842 PF01476 LysM domain QMA0440_01842 PF08525 Opacity-associated protein A N-terminal motif QMA0440_01842 PF01551 Peptidase family M23 QMA0440_01843 PF01297 Zinc-uptake complex component A periplasmic QMA0440_01844 PF00005 ABC transporter QMA0440_01845 PF00950 ABC 3 transport family QMA0440_01846 PF00854 POT family QMA0440_01847 PF05496 Holliday junction DNA helicase RuvB P-loop domain QMA0440_01847 PF17864 RuvB AAA lid domain QMA0440_01847 PF05491 RuvB C-terminal winged helix domain QMA0440_01848 PF01330 RuvA N terminal domain QMA0440_01848 PF07499 RuvA, C-terminal domain QMA0440_01849 PF02075 Crossover junction endodeoxyribonuclease RuvC QMA0440_01850 PF01709 Transcriptional regulator QMA0440_01851 PF00293 NUDIX domain QMA0440_01852 PF02938 GAD domain QMA0440_01852 PF01336 OB-fold nucleic acid binding domain QMA0440_01852 PF00152 tRNA synthetases class II (D, K and N) QMA0440_01853 PF01904 Protein of unknown function DUF72 QMA0440_01855 PF01124 MAPEG family QMA0440_01856 PF13649 Methyltransferase domain QMA0440_01857 PF08003 Protein of unknown function (DUF1698) QMA0440_01858 PF03932 CutC family QMA0440_01859 PF06185 YecM protein QMA0440_01860 PF00750 tRNA synthetases class I (R) QMA0440_01860 PF05746 DALR anticodon binding domain QMA0440_01860 PF03485 Arginyl tRNA synthetase N terminal domain QMA0440_01862 PF05860 haemagglutination activity domain QMA0440_01862 PF13332 Hemagglutinin repeat QMA0440_01863 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB QMA0440_01863 PF17287 POTRA domain QMA0440_01863 PF08479 POTRA domain, ShlB-type QMA0440_01864 PF03023 Lipid II flippase MurJ QMA0440_01865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold QMA0440_01866 PF04337 Protein of unknown function, DUF480 QMA0440_01867 PF13302 Acetyltransferase (GNAT) domain QMA0440_01868 PF07690 Major Facilitator Superfamily QMA0440_01870 PF07273 Protein of unknown function (DUF1439) QMA0440_01871 PF02613 Nitrate reductase delta subunit QMA0440_01872 PF02811 PHP domain QMA0440_01873 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain QMA0440_01874 PF00854 POT family QMA0440_01876 PF03009 Glycerophosphoryl diester phosphodiesterase family QMA0440_01878 PF00990 Diguanylate cyclase, GGDEF domain QMA0440_01879 PF01740 STAS domain QMA0440_01879 PF00916 Sulfate permease family QMA0440_01880 PF00793 DAHP synthetase I family QMA0440_01881 PF13369 Transglutaminase-like superfamily QMA0440_01882 PF04247 Invasion gene expression up-regulator, SirB QMA0440_01883 PF13847 Methyltransferase domain QMA0440_01883 PF17827 PrmC N-terminal domain QMA0440_01884 PF00472 RF-1 domain QMA0440_01884 PF03462 PCRF domain QMA0440_01885 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain QMA0440_01885 PF01488 Shikimate / quinate 5-dehydrogenase QMA0440_01885 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain QMA0440_01886 PF03550 Outer membrane lipoprotein LolB QMA0440_01887 PF08544 GHMP kinases C terminal QMA0440_01887 PF00288 GHMP kinases N terminal domain QMA0440_01888 PF14572 Phosphoribosyl synthetase-associated domain QMA0440_01888 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase QMA0440_01889 PF10762 Protein of unknown function (DUF2583) QMA0440_01890 PF01195 Peptidyl-tRNA hydrolase QMA0440_01892 PF06071 Protein of unknown function (DUF933) QMA0440_01892 PF01926 50S ribosome-binding GTPase QMA0440_01894 PF12833 Helix-turn-helix domain QMA0440_01897 PF02753 Pili assembly chaperone PapD, C-terminal domain QMA0440_01897 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain QMA0440_01898 PF00577 Outer membrane usher protein QMA0440_01898 PF13954 PapC N-terminal domain QMA0440_01900 PF01590 GAF domain QMA0440_01900 PF02954 Bacterial regulatory protein, Fis family QMA0440_01900 PF00158 Sigma-54 interaction domain QMA0440_01901 PF00586 AIR synthase related protein, N-terminal domain QMA0440_01901 PF02769 AIR synthase related protein, C-terminal domain QMA0440_01902 PF01924 Hydrogenase formation hypA family QMA0440_01903 PF01455 HupF/HypC family QMA0440_01904 PF02492 CobW/HypB/UreG, nucleotide-binding domain QMA0440_01905 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA QMA0440_01906 PF11046 Transcriptional repressor of hyc and hyp operons QMA0440_01907 PF13247 4Fe-4S dicluster domain QMA0440_01908 PF00361 Proton-conducting membrane transporter QMA0440_01909 PF00146 NADH dehydrogenase QMA0440_01910 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit QMA0440_01910 PF00374 Nickel-dependent hydrogenase QMA0440_01910 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit QMA0440_01911 PF12838 4Fe-4S dicluster domain QMA0440_01912 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit QMA0440_01913 PF07450 Formate hydrogenlyase maturation protein HycH QMA0440_01914 PF01750 Hydrogenase maturation protease QMA0440_01915 PF13247 4Fe-4S dicluster domain QMA0440_01915 PF12800 4Fe-4S binding domain QMA0440_01916 PF04879 Molybdopterin oxidoreductase Fe4S4 domain QMA0440_01916 PF00384 Molybdopterin oxidoreductase QMA0440_01916 PF01568 Molydopterin dinucleotide binding domain QMA0440_01917 PF00708 Acylphosphatase QMA0440_01917 PF17788 HypF Kae1-like domain QMA0440_01917 PF01300 Telomere recombination QMA0440_01917 PF07503 HypF finger QMA0440_01918 PF03824 High-affinity nickel-transport protein QMA0440_01920 PF03466 LysR substrate binding domain QMA0440_01920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_01921 PF05962 HutD QMA0440_01922 PF01979 Amidohydrolase family QMA0440_01923 PF00392 Bacterial regulatory proteins, gntR family QMA0440_01923 PF07702 UTRA domain QMA0440_01924 PF01979 Amidohydrolase family QMA0440_01926 PF00267 Gram-negative porin QMA0440_01927 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family QMA0440_01928 PF04996 Succinylarginine dihydrolase QMA0440_01929 PF00171 Aldehyde dehydrogenase family QMA0440_01930 PF04958 Arginine N-succinyltransferase beta subunit QMA0440_01931 PF00202 Aminotransferase class-III QMA0440_01932 PF00392 Bacterial regulatory proteins, gntR family QMA0440_01932 PF00155 Aminotransferase class I and II QMA0440_01933 PF01654 Cytochrome bd terminal oxidase subunit I QMA0440_01934 PF02322 Cytochrome bd terminal oxidase subunit II QMA0440_01936 PF00672 HAMP domain QMA0440_01936 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term QMA0440_01936 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_01936 PF07730 Histidine kinase QMA0440_01937 PF04954 Siderophore-interacting protein QMA0440_01937 PF08021 Siderophore-interacting FAD-binding domain QMA0440_01938 PF01699 Sodium/calcium exchanger protein QMA0440_01939 PF02562 PhoH-like protein QMA0440_01941 PF12833 Helix-turn-helix domain QMA0440_01941 PF02311 AraC-like ligand binding domain QMA0440_01945 PF02321 Outer membrane efflux protein QMA0440_01946 PF00529 HlyD membrane-fusion protein of T1SS QMA0440_01947 PF00005 ABC transporter QMA0440_01947 PF00664 ABC transporter transmembrane region QMA0440_01948 PF02974 Protease inhibitor Inh QMA0440_01949 PF08548 Peptidase M10 serralysin C terminal QMA0440_01949 PF00413 Matrixin QMA0440_01949 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) QMA0440_01950 PF00939 Sodium:sulfate symporter transmembrane region QMA0440_01951 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain QMA0440_01951 PF00989 PAS fold QMA0440_01951 PF17203 Single cache domain 3 QMA0440_01951 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_01952 PF00072 Response regulator receiver domain QMA0440_01953 PF03390 2-hydroxycarboxylate transporter family QMA0440_01954 PF01385 Probable transposase QMA0440_01954 PF12323 Helix-turn-helix domain QMA0440_01954 PF07282 Putative transposase DNA-binding domain QMA0440_01955 PF01797 Transposase IS200 like QMA0440_01956 PF03390 2-hydroxycarboxylate transporter family QMA0440_01957 PF00672 HAMP domain QMA0440_01957 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain QMA0440_01957 PF02203 Tar ligand binding domain homologue QMA0440_01958 PF01432 Peptidase family M3 QMA0440_01959 PF00232 Glycosyl hydrolase family 1 QMA0440_01961 PF00765 Autoinducer synthase QMA0440_01962 PF00196 Bacterial regulatory proteins, luxR family QMA0440_01962 PF03472 Autoinducer binding domain QMA0440_01963 PF01527 Transposase QMA0440_01965 PF00180 Isocitrate/isopropylmalate dehydrogenase QMA0440_01973 PF17854 FtsK alpha domain QMA0440_01973 PF13491 4TM region of DNA translocase FtsK/SpoIIIE QMA0440_01973 PF09397 Ftsk gamma domain QMA0440_01973 PF01580 FtsK/SpoIIIE family QMA0440_01990 PF03354 Phage Terminase QMA0440_01993 PF09669 Phage regulatory protein Rha (Phage_pRha) QMA0440_01993 PF10549 ORF11CD3 domain QMA0440_01995 PF00182 Chitinase class I QMA0440_01998 PF00561 alpha/beta hydrolase fold QMA0440_01999 PF01555 DNA methylase QMA0440_02001 PF06147 Protein of unknown function (DUF968) QMA0440_02006 PF05063 MT-A70 QMA0440_02007 PF03354 Phage Terminase QMA0440_02012 PF00717 Peptidase S24-like QMA0440_02012 PF01381 Helix-turn-helix QMA0440_02017 PF10065 Uncharacterized conserved protein (DUF2303) QMA0440_02021 PF07825 Excisionase-like protein QMA0440_02022 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain QMA0440_02022 PF00589 Phage integrase family QMA0440_02023 PF00180 Isocitrate/isopropylmalate dehydrogenase QMA0440_02024 PF00849 RNA pseudouridylate synthase QMA0440_02025 PF00293 NUDIX domain QMA0440_02027 PF04356 Protein of unknown function (DUF489) QMA0440_02028 PF00206 Lyase QMA0440_02028 PF08328 Adenylosuccinate lyase C-terminal QMA0440_02030 PF00072 Response regulator receiver domain QMA0440_02030 PF00486 Transcriptional regulatory protein, C terminal QMA0440_02031 PF08918 PhoQ Sensor QMA0440_02031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_02032 PF08007 Cupin superfamily protein QMA0440_02033 PF01546 Peptidase family M20/M25/M40 QMA0440_02033 PF07687 Peptidase dimerisation domain QMA0440_02034 PF02146 Sir2 family QMA0440_02035 PF00480 ROK family QMA0440_02036 PF02687 FtsX-like permease family QMA0440_02036 PF12704 MacB-like periplasmic core domain QMA0440_02037 PF00005 ABC transporter QMA0440_02038 PF12704 MacB-like periplasmic core domain QMA0440_02038 PF02687 FtsX-like permease family QMA0440_02039 PF02559 CarD-like/TRCF domain QMA0440_02039 PF03461 TRCF domain QMA0440_02039 PF00270 DEAD/DEAH box helicase QMA0440_02039 PF17757 UvrB interaction domain QMA0440_02039 PF00271 Helicase conserved C-terminal domain QMA0440_02040 PF05433 Glycine zipper 2TM domain QMA0440_02041 PF07992 Pyridine nucleotide-disulphide oxidoreductase QMA0440_02042 PF05728 Uncharacterised protein family (UPF0227) QMA0440_02043 PF00933 Glycosyl hydrolase family 3 N terminal domain QMA0440_02044 PF01636 Phosphotransferase enzyme family QMA0440_02045 PF13036 Peptidoglycan-synthase activator LpoB QMA0440_02045 PF08139 Prokaryotic membrane lipoprotein lipid attachment site QMA0440_02046 PF07233 Protein of unknown function (DUF1425) QMA0440_02047 PF01230 HIT domain QMA0440_02049 PF02378 Phosphotransferase system, EIIC QMA0440_02049 PF00367 phosphotransferase system, EIIB QMA0440_02050 PF01026 TatD related DNase QMA0440_02051 PF09115 DNA polymerase III, delta subunit, C terminal QMA0440_02052 PF02223 Thymidylate kinase QMA0440_02053 PF02618 YceG-like family QMA0440_02054 PF01063 Amino-transferase class IV QMA0440_02055 PF00109 Beta-ketoacyl synthase, N-terminal domain QMA0440_02055 PF02801 Beta-ketoacyl synthase, C-terminal domain QMA0440_02056 PF00550 Phosphopantetheine attachment site QMA0440_02058 PF00698 Acyl transferase domain QMA0440_02059 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal QMA0440_02059 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III QMA0440_02060 PF02504 Fatty acid synthesis protein QMA0440_02061 PF01783 Ribosomal L32p protein family QMA0440_02062 PF02620 Large ribosomal RNA subunit accumulation protein YceD QMA0440_02063 PF02545 Maf-like protein QMA0440_02064 PF00849 RNA pseudouridylate synthase QMA0440_02064 PF01479 S4 domain QMA0440_02065 PF00575 S1 RNA binding domain QMA0440_02065 PF12111 Polyribonucleotide phosphorylase C terminal QMA0440_02065 PF10150 Ribonuclease E/G family QMA0440_02067 PF03992 Antibiotic biosynthesis monooxygenase QMA0440_02068 PF01979 Amidohydrolase family QMA0440_02069 PF06183 DinI-like family QMA0440_02070 PF13991 BssS protein family QMA0440_02071 PF01266 FAD dependent oxidoreductase QMA0440_02072 PF00196 Bacterial regulatory proteins, luxR family QMA0440_02072 PF00072 Response regulator receiver domain QMA0440_02073 PF01594 AI-2E family transporter QMA0440_02075 PF03279 Bacterial lipid A biosynthesis acyltransferase QMA0440_02077 PF00854 POT family QMA0440_02079 PF00535 Glycosyl transferase family 2 QMA0440_02080 PF04349 Periplasmic glucan biosynthesis protein, MdoG QMA0440_02081 PF01757 Acyltransferase family QMA0440_02083 PF00999 Sodium/hydrogen exchanger family QMA0440_02083 PF03471 Transporter associated domain QMA0440_02083 PF02080 TrkA-C domain QMA0440_02084 PF00484 Carbonic anhydrase QMA0440_02086 PF04358 DsrC like protein QMA0440_02087 PF00708 Acylphosphatase QMA0440_02088 PF17785 PUA-like domain QMA0440_02088 PF10672 S-adenosylmethionine-dependent methyltransferase QMA0440_02089 PF08755 Hemimethylated DNA-binding protein YccV like QMA0440_02090 PF13380 CoA binding domain QMA0440_02091 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) QMA0440_02092 PF02142 MGS-like domain QMA0440_02093 PF12462 DNA helicase IV / RNA helicase N terminal QMA0440_02093 PF00580 UvrD/REP helicase N-terminal domain QMA0440_02093 PF13361 UvrD-like helicase C-terminal domain QMA0440_02094 PF03733 Inner membrane component domain QMA0440_02095 PF12805 FUSC-like inner membrane protein yccS QMA0440_02096 PF04993 TfoX N-terminal domain QMA0440_02096 PF04994 TfoX C-terminal domain QMA0440_02097 PF03846 Cell division inhibitor SulA QMA0440_02098 PF00691 OmpA family QMA0440_02098 PF01389 OmpA-like transmembrane domain QMA0440_02099 PF17414 MatP C-terminal ribbon-helix-helix domain QMA0440_02099 PF06303 MatP N-terminal domain QMA0440_02100 PF05362 Lon protease (S16) C-terminal proteolytic domain QMA0440_02100 PF13654 AAA domain QMA0440_02101 PF07977 FabA-like domain QMA0440_02102 PF04957 Ribosome modulation factor QMA0440_02103 PF03886 ABC-type transport auxiliary lipoprotein component QMA0440_02104 PF02470 MlaD protein QMA0440_02105 PF04403 Paraquat-inducible protein A QMA0440_02106 PF00005 ABC transporter QMA0440_02106 PF16326 ABC transporter C-terminal domain QMA0440_02106 PF12848 ABC transporter QMA0440_02107 PF01170 Putative RNA methylase family UPF0020 QMA0440_02107 PF02926 THUMP domain QMA0440_02107 PF10672 S-adenosylmethionine-dependent methyltransferase QMA0440_02108 PF03476 MOSC N-terminal beta barrel domain QMA0440_02108 PF03473 MOSC domain QMA0440_02108 PF00111 2Fe-2S iron-sulfur cluster binding domain QMA0440_02109 PF07126 Cell-division protein ZapC QMA0440_02110 PF01180 Dihydroorotate dehydrogenase QMA0440_02111 PF01433 Peptidase family M1 domain QMA0440_02111 PF17432 Domain of unknown function (DUF3458_C) ARM repeats QMA0440_02111 PF11940 Domain of unknown function (DUF3458) Ig-like fold QMA0440_02112 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family QMA0440_02112 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain QMA0440_02113 PF00152 tRNA synthetases class II (D, K and N) QMA0440_02113 PF01336 OB-fold nucleic acid binding domain QMA0440_02114 PF00267 Gram-negative porin QMA0440_02115 PF00155 Aminotransferase class I and II QMA0440_02116 PF00753 Metallo-beta-lactamase superfamily QMA0440_02117 PF05951 Bacterial protein of unknown function (DUF882) QMA0440_02118 PF01471 Putative peptidoglycan binding domain QMA0440_02118 PF03734 L,D-transpeptidase catalytic domain QMA0440_02119 PF16330 MukB hinge domain QMA0440_02119 PF04310 MukB N-terminal QMA0440_02120 PF04288 MukE-like family QMA0440_02121 PF17192 MukF middle domain QMA0440_02121 PF17193 MukF C-terminal domain QMA0440_02121 PF03882 MukF winged-helix domain QMA0440_02123 PF02698 DUF218 domain QMA0440_02124 PF01636 Phosphotransferase enzyme family QMA0440_02125 PF02348 Cytidylyltransferase QMA0440_02126 PF03966 Trm112p-like protein QMA0440_02127 PF00313 'Cold-shock' DNA-binding domain QMA0440_02128 PF00313 'Cold-shock' DNA-binding domain QMA0440_02129 PF07063 Domain of unknown function (DUF1338) QMA0440_02130 PF02606 Tetraacyldisaccharide-1-P 4'-kinase QMA0440_02131 PF00664 ABC transporter transmembrane region QMA0440_02131 PF00005 ABC transporter QMA0440_02132 PF00753 Metallo-beta-lactamase superfamily QMA0440_02132 PF03772 Competence protein QMA0440_02133 PF00216 Bacterial DNA-binding protein QMA0440_02134 PF00575 S1 RNA binding domain QMA0440_02135 PF02224 Cytidylate kinase QMA0440_02136 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) QMA0440_02137 PF00266 Aminotransferase class-V QMA0440_02138 PF17763 Glutaminase/Asparaginase C-terminal domain QMA0440_02138 PF00710 Asparaginase, N-terminal QMA0440_02139 PF18381 YcaO cyclodehydratase C-terminal domain QMA0440_02139 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding QMA0440_02140 PF01226 Formate/nitrite transporter QMA0440_02141 PF02901 Pyruvate formate lyase-like QMA0440_02141 PF01228 Glycine radical QMA0440_02142 PF04055 Radical SAM superfamily QMA0440_02143 PF07690 Major Facilitator Superfamily QMA0440_02144 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) QMA0440_02144 PF02403 Seryl-tRNA synthetase N-terminal domain QMA0440_02145 PF12002 MgsA AAA+ ATPase C terminal QMA0440_02145 PF16193 AAA C-terminal domain QMA0440_02145 PF00004 ATPase family associated with various cellular activities (AAA) QMA0440_02146 PF03548 Outer membrane lipoprotein carrier protein LolA QMA0440_02147 PF13491 4TM region of DNA translocase FtsK/SpoIIIE QMA0440_02147 PF17854 FtsK alpha domain QMA0440_02147 PF09397 Ftsk gamma domain QMA0440_02147 PF01580 FtsK/SpoIIIE family QMA0440_02148 PF01037 Lrp/AsnC ligand binding domain QMA0440_02149 PF07992 Pyridine nucleotide-disulphide oxidoreductase QMA0440_02150 PF00005 ABC transporter QMA0440_02150 PF00664 ABC transporter transmembrane region QMA0440_02151 PF00005 ABC transporter QMA0440_02151 PF00664 ABC transporter transmembrane region QMA0440_02152 PF03588 Leucyl/phenylalanyl-tRNA protein transferase QMA0440_02153 PF01176 Translation initiation factor 1A / IF-1 QMA0440_02154 PF17871 AAA lid domain QMA0440_02154 PF00004 ATPase family associated with various cellular activities (AAA) QMA0440_02154 PF02861 Clp amino terminal domain, pathogenicity island component QMA0440_02154 PF07724 AAA domain (Cdc48 subfamily) QMA0440_02154 PF10431 C-terminal, D2-small domain, of ClpB protein QMA0440_02155 PF02617 ATP-dependent Clp protease adaptor protein ClpS QMA0440_02156 PF00313 'Cold-shock' DNA-binding domain QMA0440_02157 PF12704 MacB-like periplasmic core domain QMA0440_02157 PF02687 FtsX-like permease family QMA0440_02157 PF00005 ABC transporter QMA0440_02158 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion QMA0440_02159 PF04393 Protein of unknown function (DUF535) QMA0440_02160 PF11398 Protein of unknown function (DUF2813) QMA0440_02161 PF03956 Lysine exporter LysO QMA0440_02162 PF03063 Prismane/CO dehydrogenase family QMA0440_02163 PF00111 2Fe-2S iron-sulfur cluster binding domain QMA0440_02163 PF00970 Oxidoreductase FAD-binding domain QMA0440_02163 PF00175 Oxidoreductase NAD-binding domain QMA0440_02164 PF01212 Beta-eliminating lyase QMA0440_02165 PF11066 Protein of unknown function (DUF2867) QMA0440_02165 PF13460 NAD(P)H-binding QMA0440_02166 PF01370 NAD dependent epimerase/dehydratase family QMA0440_02167 PF01906 Putative heavy-metal-binding QMA0440_02168 PF12883 Protein of unknown function (DUF3828) QMA0440_02169 PF00005 ABC transporter QMA0440_02170 PF00497 Bacterial extracellular solute-binding proteins, family 3 QMA0440_02171 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02172 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02173 PF00497 Bacterial extracellular solute-binding proteins, family 3 QMA0440_02174 PF05958 tRNA (Uracil-5-)-methyltransferase QMA0440_02175 PF10767 Protein of unknown function (DUF2593) QMA0440_02176 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02177 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02178 PF08402 TOBE domain QMA0440_02178 PF00005 ABC transporter QMA0440_02179 PF13416 Bacterial extracellular solute-binding protein QMA0440_02180 PF10722 Putative bacterial sensory transduction regulator QMA0440_02181 PF07214 Protein of unknown function (DUF1418) QMA0440_02182 PF00462 Glutaredoxin QMA0440_02183 PF02080 TrkA-C domain QMA0440_02183 PF06826 Predicted Permease Membrane Region QMA0440_02185 PF01569 PAP2 superfamily QMA0440_02186 PF01791 DeoC/LacD family aldolase QMA0440_02187 PF08220 DeoR-like helix-turn-helix domain QMA0440_02187 PF00455 DeoR C terminal sensor domain QMA0440_02189 PF03315 Serine dehydratase beta chain QMA0440_02189 PF03313 Serine dehydratase alpha chain QMA0440_02190 PF00768 D-alanyl-D-alanine carboxypeptidase QMA0440_02190 PF07943 Penicillin-binding protein 5, C-terminal domain QMA0440_02191 PF00291 Pyridoxal-phosphate dependent enzyme QMA0440_02191 PF00571 CBS domain QMA0440_02192 PF01053 Cys/Met metabolism PLP-dependent enzyme QMA0440_02195 PF00043 Glutathione S-transferase, C-terminal domain QMA0440_02195 PF13417 Glutathione S-transferase, N-terminal domain QMA0440_02196 PF01370 NAD dependent epimerase/dehydratase family QMA0440_02197 PF08029 HisG, C-terminal domain QMA0440_02197 PF01634 ATP phosphoribosyltransferase QMA0440_02198 PF00815 Histidinol dehydrogenase QMA0440_02199 PF00155 Aminotransferase class I and II QMA0440_02200 PF00475 Imidazoleglycerol-phosphate dehydratase QMA0440_02201 PF00117 Glutamine amidotransferase class-I QMA0440_02202 PF00977 Histidine biosynthesis protein QMA0440_02203 PF00977 Histidine biosynthesis protein QMA0440_02204 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase QMA0440_02204 PF01502 Phosphoribosyl-AMP cyclohydrolase QMA0440_02205 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain QMA0440_02205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase QMA0440_02206 PF00483 Nucleotidyl transferase QMA0440_02207 PF00483 Nucleotidyl transferase QMA0440_02208 PF00571 CBS domain QMA0440_02208 PF03471 Transporter associated domain QMA0440_02208 PF03741 Integral membrane protein TerC family QMA0440_02209 PF03606 C4-dicarboxylate anaerobic carrier QMA0440_02210 PF05170 AsmA family QMA0440_02211 PF00692 dUTPase QMA0440_02212 PF00485 Phosphoribulokinase / Uridine kinase family QMA0440_02213 PF10609 NUBPL iron-transfer P-loop NTPase QMA0440_02214 PF09334 tRNA synthetases class I (M) QMA0440_02214 PF01588 Putative tRNA binding domain QMA0440_02216 PF03788 LrgA family QMA0440_02217 PF04172 LrgB-like family QMA0440_02218 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region QMA0440_02218 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region QMA0440_02219 PF03466 LysR substrate binding domain QMA0440_02219 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_02221 PF01797 Transposase IS200 like QMA0440_02222 PF12323 Helix-turn-helix domain QMA0440_02222 PF01385 Probable transposase QMA0440_02222 PF07282 Putative transposase DNA-binding domain QMA0440_02224 PF03949 Malic enzyme, NAD binding domain QMA0440_02224 PF00390 Malic enzyme, N-terminal domain QMA0440_02225 PF02698 DUF218 domain QMA0440_02226 PF02653 Branched-chain amino acid transport system / permease component QMA0440_02227 PF00005 ABC transporter QMA0440_02228 PF13407 Periplasmic binding protein domain QMA0440_02229 PF00356 Bacterial regulatory proteins, lacI family QMA0440_02230 PF04235 Protein of unknown function (DUF418) QMA0440_02231 PF01227 GTP cyclohydrolase I QMA0440_02232 PF06779 Uncharacterised MFS-type transporter YbfB QMA0440_02233 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_02233 PF03466 LysR substrate binding domain QMA0440_02234 PF00107 Zinc-binding dehydrogenase QMA0440_02234 PF08240 Alcohol dehydrogenase GroES-like domain QMA0440_02235 PF00756 Putative esterase QMA0440_02237 PF00994 Probable molybdopterin binding domain QMA0440_02237 PF03454 MoeA C-terminal region (domain IV) QMA0440_02237 PF03453 MoeA N-terminal region (domain I and II) QMA0440_02238 PF00899 ThiF family QMA0440_02239 PF12848 ABC transporter QMA0440_02239 PF00005 ABC transporter QMA0440_02240 PF16916 Dimerisation domain of Zinc Transporter QMA0440_02240 PF01545 Cation efflux family QMA0440_02241 PF03448 MgtE intracellular N domain QMA0440_02241 PF00571 CBS domain QMA0440_02241 PF01769 Divalent cation transporter QMA0440_02242 PF13505 Outer membrane protein beta-barrel domain QMA0440_02243 PF00892 EamA-like transporter family QMA0440_02244 PF13649 Methyltransferase domain QMA0440_02245 PF00210 Ferritin-like domain QMA0440_02246 PF00497 Bacterial extracellular solute-binding proteins, family 3 QMA0440_02247 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02248 PF00005 ABC transporter QMA0440_02249 PF05971 RNA methyltransferase QMA0440_02250 PF02885 Glycosyl transferase family, helical bundle domain QMA0440_02251 PF06733 DEAD_2 QMA0440_02251 PF13307 Helicase C-terminal domain QMA0440_02252 PF00267 Gram-negative porin QMA0440_02253 PF00892 EamA-like transporter family QMA0440_02255 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain QMA0440_02255 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain QMA0440_02255 PF01276 Orn/Lys/Arg decarboxylase, major domain QMA0440_02256 PF13520 Amino acid permease QMA0440_02257 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02258 PF00005 ABC transporter QMA0440_02259 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02260 PF04069 Substrate binding domain of ABC-type glycine betaine transport system QMA0440_02261 PF00581 Rhodanese-like domain QMA0440_02262 PF07308 Protein of unknown function (DUF1456) QMA0440_02263 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02264 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02266 PF00005 ABC transporter QMA0440_02267 PF04226 Transglycosylase associated protein QMA0440_02269 PF01844 HNH endonuclease QMA0440_02270 PF01928 CYTH domain QMA0440_02271 PF09330 D-lactate dehydrogenase, membrane binding QMA0440_02271 PF01565 FAD binding domain QMA0440_02272 PF00768 D-alanyl-D-alanine carboxypeptidase QMA0440_02274 PF01207 Dihydrouridine synthase (Dus) QMA0440_02275 PF00270 DEAD/DEAH box helicase QMA0440_02275 PF00271 Helicase conserved C-terminal domain QMA0440_02276 PF00440 Bacterial regulatory proteins, tetR family QMA0440_02276 PF09209 Tetracyclin repressor-like, C-terminal domain QMA0440_02277 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion QMA0440_02278 PF00005 ABC transporter QMA0440_02281 PF01027 Inhibitor of apoptosis-promoting Bax1 QMA0440_02282 PF02391 MoaE protein QMA0440_02283 PF02597 ThiS family QMA0440_02284 PF01967 MoaC family QMA0440_02285 PF06463 Molybdenum Cofactor Synthesis C QMA0440_02285 PF04055 Radical SAM superfamily QMA0440_02286 PF01933 Uncharacterised protein family UPF0052 QMA0440_02291 PF09905 DNA-binding protein VF530 QMA0440_02292 PF00271 Helicase conserved C-terminal domain QMA0440_02292 PF04851 Type III restriction enzyme, res subunit QMA0440_02292 PF17757 UvrB interaction domain QMA0440_02292 PF12344 Ultra-violet resistance protein B QMA0440_02292 PF02151 UvrB/uvrC motif QMA0440_02293 PF00005 ABC transporter QMA0440_02295 PF08241 Methyltransferase domain QMA0440_02296 PF00155 Aminotransferase class I and II QMA0440_02297 PF06968 Biotin and Thiamin Synthesis associated domain QMA0440_02297 PF04055 Radical SAM superfamily QMA0440_02298 PF00202 Aminotransferase class-III QMA0440_02299 PF10282 Lactonase, 7-bladed beta-propeller QMA0440_02301 PF00005 ABC transporter QMA0440_02301 PF03459 TOBE domain QMA0440_02302 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02304 PF10766 Multidrug efflux pump-associated protein AcrZ QMA0440_02305 PF03459 TOBE domain QMA0440_02305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_02307 PF16363 GDP-mannose 4,6 dehydratase QMA0440_02308 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain QMA0440_02308 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain QMA0440_02309 PF08544 GHMP kinases C terminal QMA0440_02309 PF00288 GHMP kinases N terminal domain QMA0440_02309 PF10509 Galactokinase galactose-binding signature QMA0440_02310 PF01263 Aldose 1-epimerase QMA0440_02312 PF00300 Histidine phosphatase superfamily (branch 1) QMA0440_02313 PF00793 DAHP synthetase I family QMA0440_02314 PF00072 Response regulator receiver domain QMA0440_02314 PF00196 Bacterial regulatory proteins, luxR family QMA0440_02315 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_02315 PF01627 Hpt domain QMA0440_02315 PF00989 PAS fold QMA0440_02315 PF00072 Response regulator receiver domain QMA0440_02315 PF00497 Bacterial extracellular solute-binding proteins, family 3 QMA0440_02315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_02316 PF04973 Nicotinamide mononucleotide transporter QMA0440_02317 PF02445 Quinolinate synthetase A protein QMA0440_02322 PF13174 Tetratricopeptide repeat QMA0440_02322 PF16331 TolA binding protein trimerisation QMA0440_02323 PF00691 OmpA family QMA0440_02324 PF04052 TolB amino-terminal domain QMA0440_02324 PF07676 WD40-like Beta Propeller Repeat QMA0440_02325 PF06519 TolA C-terminal QMA0440_02325 PF06519 TolA C-terminal QMA0440_02326 PF02472 Biopolymer transport protein ExbD/TolR QMA0440_02327 PF01618 MotA/TolQ/ExbB proton channel family QMA0440_02328 PF03061 Thioesterase superfamily QMA0440_02329 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) QMA0440_02330 PF08173 Membrane bound YbgT-like protein QMA0440_02331 PF02322 Cytochrome bd terminal oxidase subunit II QMA0440_02332 PF01654 Cytochrome bd terminal oxidase subunit I QMA0440_02333 PF00149 Calcineurin-like phosphoesterase QMA0440_02333 PF02872 5'-nucleotidase, C-terminal domain QMA0440_02334 PF02629 CoA binding domain QMA0440_02334 PF00549 CoA-ligase QMA0440_02335 PF00549 CoA-ligase QMA0440_02335 PF08442 ATP-grasp domain QMA0440_02336 PF00364 Biotin-requiring enzyme QMA0440_02336 PF02817 e3 binding domain QMA0440_02336 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) QMA0440_02337 PF00676 Dehydrogenase E1 component QMA0440_02337 PF16870 2-oxoglutarate dehydrogenase C-terminal QMA0440_02337 PF02779 Transketolase, pyrimidine binding domain QMA0440_02337 PF16078 2-oxoglutarate dehydrogenase N-terminus QMA0440_02338 PF13085 2Fe-2S iron-sulfur cluster binding domain QMA0440_02339 PF00890 FAD binding domain QMA0440_02339 PF02910 Fumarate reductase flavoprotein C-term QMA0440_02340 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit QMA0440_02341 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit QMA0440_02342 PF00285 Citrate synthase, C-terminal domain QMA0440_02344 PF01470 Pyroglutamyl peptidase QMA0440_02347 PF03746 LamB/YcsF family QMA0440_02348 PF02626 Carboxyltransferase domain, subdomain A and B QMA0440_02349 PF02682 Carboxyltransferase domain, subdomain C and D QMA0440_02350 PF01784 NIF3 (NGG1p interacting factor 3) QMA0440_02351 PF02112 cAMP phosphodiesterases class-II QMA0440_02352 PF00875 DNA photolyase QMA0440_02352 PF03441 FAD binding domain of DNA photolyase QMA0440_02353 PF08349 Protein of unknown function (DUF1722) QMA0440_02354 PF10725 Protein of unknown function (DUF2517) QMA0440_02355 PF03814 Potassium-transporting ATPase A subunit QMA0440_02357 PF02669 K+-transporting ATPase, c chain QMA0440_02358 PF02702 Osmosensitive K+ channel His kinase sensor domain QMA0440_02358 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_02358 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_02358 PF13492 GAF domain QMA0440_02358 PF13493 Domain of unknown function (DUF4118) QMA0440_02359 PF00072 Response regulator receiver domain QMA0440_02359 PF00486 Transcriptional regulatory protein, C terminal QMA0440_02361 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I QMA0440_02361 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II QMA0440_02361 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III QMA0440_02361 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain QMA0440_02362 PF17206 SeqA protein N-terminal domain QMA0440_02362 PF03925 SeqA protein C-terminal domain QMA0440_02363 PF12697 Alpha/beta hydrolase family QMA0440_02364 PF01402 Ribbon-helix-helix protein, copG family QMA0440_02365 PF00672 HAMP domain QMA0440_02365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain QMA0440_02365 PF02203 Tar ligand binding domain homologue QMA0440_02366 PF00258 Flavodoxin QMA0440_02367 PF01475 Ferric uptake regulator family QMA0440_02368 PF01797 Transposase IS200 like QMA0440_02369 PF01385 Probable transposase QMA0440_02369 PF07282 Putative transposase DNA-binding domain QMA0440_02369 PF12323 Helix-turn-helix domain QMA0440_02370 PF02838 Glycosyl hydrolase family 20, domain 2 QMA0440_02370 PF00728 Glycosyl hydrolase family 20, catalytic domain QMA0440_02370 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain QMA0440_02370 PF03173 Putative carbohydrate binding domain QMA0440_02371 PF13982 YbfN-like lipoprotein QMA0440_02372 PF03573 outer membrane porin, OprD family QMA0440_02374 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain QMA0440_02374 PF00749 tRNA synthetases class I (E and Q), catalytic domain QMA0440_02375 PF00367 phosphotransferase system, EIIB QMA0440_02375 PF02378 Phosphotransferase system, EIIC QMA0440_02375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 QMA0440_02376 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase QMA0440_02377 PF01979 Amidohydrolase family QMA0440_02378 PF01047 MarR family QMA0440_02378 PF00480 ROK family QMA0440_02379 PF13344 Haloacid dehalogenase-like hydrolase QMA0440_02380 PF00733 Asparagine synthase QMA0440_02380 PF13537 Glutamine amidotransferase domain QMA0440_02387 PF01494 FAD binding domain QMA0440_02388 PF04055 Radical SAM superfamily QMA0440_02388 PF01938 TRAM domain QMA0440_02388 PF00919 Uncharacterized protein family UPF0004 QMA0440_02390 PF02562 PhoH-like protein QMA0440_02391 PF02130 Uncharacterized protein family UPF0054 QMA0440_02392 PF03471 Transporter associated domain QMA0440_02392 PF00571 CBS domain QMA0440_02393 PF00795 Carbon-nitrogen hydrolase QMA0440_02395 PF00497 Bacterial extracellular solute-binding proteins, family 3 QMA0440_02396 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02397 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02398 PF00005 ABC transporter QMA0440_02399 PF07295 Zinc-ribbon containing domain QMA0440_02400 PF13603 Leucyl-tRNA synthetase, Domain 2 QMA0440_02400 PF00133 tRNA synthetases class I (I, L, M and V) QMA0440_02400 PF08264 Anticodon-binding domain of tRNA QMA0440_02401 PF04390 Lipopolysaccharide-assembly QMA0440_02402 PF14840 Processivity clamp loader gamma complex DNA pol III C-term QMA0440_02402 PF06144 DNA polymerase III, delta subunit QMA0440_02403 PF01467 Cytidylyltransferase-like QMA0440_02404 PF02413 Caudovirales tail fibre assembly protein, lambda gpK QMA0440_02405 PF07484 Phage Tail Collar Domain QMA0440_02405 PF03335 Phage tail fibre repeat QMA0440_02405 PF08400 Prophage tail fibre N-terminal QMA0440_02407 PF04865 Baseplate J-like protein QMA0440_02416 PF17482 Phage tail sheath C-terminal domain QMA0440_02416 PF04984 Phage tail sheath protein subtilisin-like domain QMA0440_02419 PF01527 Transposase QMA0440_02420 PF13276 HTH-like domain QMA0440_02420 PF00665 Integrase core domain QMA0440_02420 PF13333 Integrase core domain QMA0440_02427 PF01343 Peptidase family S49 QMA0440_02441 PF00182 Chitinase class I QMA0440_02454 PF06992 Replication protein P QMA0440_02478 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain QMA0440_02478 PF00589 Phage integrase family QMA0440_02479 PF02413 Caudovirales tail fibre assembly protein, lambda gpK QMA0440_02480 PF03335 Phage tail fibre repeat QMA0440_02480 PF07484 Phage Tail Collar Domain QMA0440_02480 PF08400 Prophage tail fibre N-terminal QMA0440_02482 PF04865 Baseplate J-like protein QMA0440_02491 PF17482 Phage tail sheath C-terminal domain QMA0440_02491 PF04984 Phage tail sheath protein subtilisin-like domain QMA0440_02499 PF01343 Peptidase family S49 QMA0440_02509 PF00182 Chitinase class I QMA0440_02521 PF00772 DnaB-like helicase N terminal domain QMA0440_02521 PF03796 DnaB-like helicase C terminal domain QMA0440_02526 PF00717 Peptidase S24-like QMA0440_02526 PF01381 Helix-turn-helix QMA0440_02547 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain QMA0440_02547 PF00589 Phage integrase family QMA0440_02549 PF02590 Predicted SPOUT methyltransferase QMA0440_02550 PF00905 Penicillin binding protein transpeptidase domain QMA0440_02550 PF03717 Penicillin-binding Protein dimerisation domain QMA0440_02551 PF01098 Cell cycle protein QMA0440_02552 PF03330 Lytic transglycolase QMA0440_02552 PF05036 Sporulation related domain QMA0440_02553 PF07943 Penicillin-binding protein 5, C-terminal domain QMA0440_02553 PF00768 D-alanyl-D-alanine carboxypeptidase QMA0440_02554 PF04359 Protein of unknown function (DUF493) QMA0440_02555 PF03099 Biotin/lipoate A/B protein ligase family QMA0440_02556 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family QMA0440_02556 PF04055 Radical SAM superfamily QMA0440_02557 PF02416 mttA/Hcf106 family QMA0440_02558 PF00990 Diguanylate cyclase, GGDEF domain QMA0440_02558 PF05230 MASE2 domain QMA0440_02561 PF02537 CrcB-like protein, Camphor Resistance (CrcB) QMA0440_02562 PF00313 'Cold-shock' DNA-binding domain QMA0440_02563 PF00313 'Cold-shock' DNA-binding domain QMA0440_02564 PF00196 Bacterial regulatory proteins, luxR family QMA0440_02569 PF00440 Bacterial regulatory proteins, tetR family QMA0440_02570 PF00072 Response regulator receiver domain QMA0440_02570 PF00990 Diguanylate cyclase, GGDEF domain QMA0440_02571 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_02571 PF00072 Response regulator receiver domain QMA0440_02571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_02571 PF00672 HAMP domain QMA0440_02571 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) QMA0440_02571 PF01627 Hpt domain QMA0440_02576 PF07238 PilZ domain QMA0440_02576 PF00535 Glycosyl transferase family 2 QMA0440_02576 PF03552 Cellulose synthase QMA0440_02578 PF00483 Nucleotidyl transferase QMA0440_02580 PF00072 Response regulator receiver domain QMA0440_02582 PF00343 Carbohydrate phosphorylase QMA0440_02584 PF01292 Prokaryotic cytochrome b561 QMA0440_02589 PF00501 AMP-binding enzyme QMA0440_02591 PF03960 ArsC family QMA0440_02592 PF02040 Arsenical pump membrane protein QMA0440_02593 PF01022 Bacterial regulatory protein, arsR family QMA0440_02596 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain QMA0440_02596 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain QMA0440_02603 PF02753 Pili assembly chaperone PapD, C-terminal domain QMA0440_02603 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain QMA0440_02604 PF00577 Outer membrane usher protein QMA0440_02604 PF13954 PapC N-terminal domain QMA0440_02604 PF13953 PapC C-terminal domain QMA0440_02605 PF00419 Fimbrial protein QMA0440_02608 PF01406 tRNA synthetases class I (C) catalytic domain QMA0440_02608 PF09190 DALR domain QMA0440_02609 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD QMA0440_02610 PF00149 Calcineurin-like phosphoesterase QMA0440_02611 PF00731 AIR carboxylase QMA0440_02612 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain QMA0440_02612 PF02222 ATP-grasp domain QMA0440_02614 PF00005 ABC transporter QMA0440_02615 PF13472 GDSL-like Lipase/Acylhydrolase family QMA0440_02616 PF00106 short chain dehydrogenase QMA0440_02617 PF00085 Thioredoxin QMA0440_02618 PF01145 SPFH domain / Band 7 family QMA0440_02618 PF16200 C-terminal region of band_7 QMA0440_02619 PF01957 NfeD-like C-terminal, partner-binding QMA0440_02620 PF13411 MerR HTH family regulatory protein QMA0440_02621 PF00403 Heavy-metal-associated domain QMA0440_02622 PF01963 TraB family QMA0440_02623 PF04073 Aminoacyl-tRNA editing domain QMA0440_02624 PF02872 5'-nucleotidase, C-terminal domain QMA0440_02624 PF00149 Calcineurin-like phosphoesterase QMA0440_02626 PF02254 TrkA-N domain QMA0440_02626 PF00999 Sodium/hydrogen exchanger family QMA0440_02627 PF00294 pfkB family carbohydrate kinase QMA0440_02628 PF02706 Chain length determinant protein QMA0440_02629 PF00762 Ferrochelatase QMA0440_02630 PF05191 Adenylate kinase, active site lid QMA0440_02632 PF02132 RecR protein QMA0440_02632 PF13662 Toprim domain QMA0440_02633 PF02575 YbaB/EbfC DNA-binding family QMA0440_02634 PF12170 DNA polymerase III tau subunit V interacting with alpha QMA0440_02634 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding QMA0440_02634 PF12169 DNA polymerase III subunits gamma and tau domain III QMA0440_02635 PF08521 Two-component sensor kinase N-terminal QMA0440_02635 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_02635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_02636 PF00486 Transcriptional regulatory protein, C terminal QMA0440_02636 PF00072 Response regulator receiver domain QMA0440_02639 PF01970 Tripartite tricarboxylate transporter TctA family QMA0440_02640 PF00156 Phosphoribosyl transferase domain QMA0440_02641 PF04304 Protein of unknown function (DUF454) QMA0440_02643 PF10689 Protein of unknown function (DUF2496) QMA0440_02644 PF12794 Mechanosensitive ion channel inner membrane domain 1 QMA0440_02644 PF12795 Mechanosensitive ion channel porin domain QMA0440_02644 PF00924 Mechanosensitive ion channel QMA0440_02645 PF02635 DsrE/DsrF-like family QMA0440_02646 PF00440 Bacterial regulatory proteins, tetR family QMA0440_02646 PF08361 MAATS-type transcriptional repressor, C-terminal region QMA0440_02647 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion QMA0440_02647 PF00529 HlyD membrane-fusion protein of T1SS QMA0440_02648 PF00873 AcrB/AcrD/AcrF family QMA0440_02649 PF01197 Ribosomal protein L31 QMA0440_02650 PF00444 Ribosomal protein L36 QMA0440_02652 PF10757 Biofilm formation regulator YbaJ QMA0440_02653 PF05321 Haemolysin expression modulating protein QMA0440_02654 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain QMA0440_02656 PF00909 Ammonium Transporter Family QMA0440_02657 PF00543 Nitrogen regulatory protein P-II QMA0440_02658 PF00005 ABC transporter QMA0440_02658 PF00664 ABC transporter transmembrane region QMA0440_02659 PF00005 ABC transporter QMA0440_02659 PF00664 ABC transporter transmembrane region QMA0440_02660 PF01037 Lrp/AsnC ligand binding domain QMA0440_02660 PF13404 AsnC-type helix-turn-helix domain QMA0440_02663 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle QMA0440_02663 PF12793 Sugar transport-related sRNA regulator N-term QMA0440_02664 PF06508 Queuosine biosynthesis protein QueC QMA0440_02667 PF13145 PPIC-type PPIASE domain QMA0440_02668 PF00216 Bacterial DNA-binding protein QMA0440_02669 PF00004 ATPase family associated with various cellular activities (AAA) QMA0440_02669 PF05362 Lon protease (S16) C-terminal proteolytic domain QMA0440_02669 PF02190 ATP-dependent protease La (LON) substrate-binding domain QMA0440_02670 PF07724 AAA domain (Cdc48 subfamily) QMA0440_02670 PF10431 C-terminal, D2-small domain, of ClpB protein QMA0440_02670 PF06689 ClpX C4-type zinc finger QMA0440_02671 PF00574 Clp protease QMA0440_02672 PF05697 Bacterial trigger factor protein (TF) QMA0440_02672 PF05698 Bacterial trigger factor protein (TF) C-terminus QMA0440_02672 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase QMA0440_02674 PF01722 BolA-like protein QMA0440_02675 PF08139 Prokaryotic membrane lipoprotein lipid attachment site QMA0440_02675 PF03923 Uncharacterized lipoprotein QMA0440_02676 PF07690 Major Facilitator Superfamily QMA0440_02677 PF03502 Nucleoside-specific channel-forming protein, Tsx QMA0440_02678 PF06481 COX Aromatic Rich Motif QMA0440_02678 PF00116 Cytochrome C oxidase subunit II, periplasmic domain QMA0440_02679 PF00115 Cytochrome C and Quinol oxidase polypeptide I QMA0440_02680 PF00510 Cytochrome c oxidase subunit III QMA0440_02681 PF03626 Prokaryotic Cytochrome C oxidase subunit IV QMA0440_02682 PF01040 UbiA prenyltransferase family QMA0440_02683 PF07690 Major Facilitator Superfamily QMA0440_02684 PF04461 Protein of unknown function (DUF520) QMA0440_02685 PF08546 Ketopantoate reductase PanE/ApbA C terminal QMA0440_02685 PF02558 Ketopantoate reductase PanE/ApbA QMA0440_02686 PF01965 DJ-1/PfpI family QMA0440_02687 PF07690 Major Facilitator Superfamily QMA0440_02689 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_02689 PF00672 HAMP domain QMA0440_02689 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_02690 PF14532 Sigma-54 interaction domain QMA0440_02690 PF02954 Bacterial regulatory protein, Fis family QMA0440_02690 PF00072 Response regulator receiver domain QMA0440_02691 PF02926 THUMP domain QMA0440_02691 PF02568 Thiamine biosynthesis protein (ThiI) QMA0440_02692 PF02609 Exonuclease VII small subunit QMA0440_02693 PF00348 Polyprenyl synthetase QMA0440_02694 PF13292 1-deoxy-D-xylulose-5-phosphate synthase QMA0440_02694 PF02779 Transketolase, pyrimidine binding domain QMA0440_02694 PF02780 Transketolase, C-terminal domain QMA0440_02695 PF04608 Phosphatidylglycerophosphatase A QMA0440_02696 PF02769 AIR synthase related protein, C-terminal domain QMA0440_02696 PF00586 AIR synthase related protein, N-terminal domain QMA0440_02697 PF01029 NusB family QMA0440_02698 PF00885 6,7-dimethyl-8-ribityllumazine synthase QMA0440_02699 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region QMA0440_02699 PF01872 RibD C-terminal domain QMA0440_02700 PF03477 ATP cone domain QMA0440_02701 PF02355 Protein export membrane protein QMA0440_02701 PF07549 SecD/SecF GG Motif QMA0440_02702 PF07549 SecD/SecF GG Motif QMA0440_02702 PF13721 SecD export protein N-terminal TM region QMA0440_02702 PF02355 Protein export membrane protein QMA0440_02703 PF02699 Preprotein translocase subunit QMA0440_02704 PF01702 Queuine tRNA-ribosyltransferase QMA0440_02705 PF02547 Queuosine biosynthesis protein QMA0440_02706 PF04336 Acyl carrier protein phosphodiesterase QMA0440_02707 PF00578 AhpC/TSA family QMA0440_02707 PF10417 C-terminal domain of 1-Cys peroxiredoxin QMA0440_02709 PF00128 Alpha amylase, catalytic domain QMA0440_02709 PF02903 Alpha amylase, N-terminal ig-like domain QMA0440_02710 PF00324 Amino acid permease QMA0440_02711 PF05525 Branched-chain amino acid transport protein QMA0440_02712 PF12849 PBP superfamily domain QMA0440_02713 PF11808 Phosphate regulon sensor protein PhoR QMA0440_02713 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_02713 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_02713 PF00989 PAS fold QMA0440_02714 PF00072 Response regulator receiver domain QMA0440_02714 PF00486 Transcriptional regulatory protein, C terminal QMA0440_02715 PF12320 Type 5 capsule protein repressor C-terminal domain QMA0440_02715 PF00149 Calcineurin-like phosphoesterase QMA0440_02716 PF13476 AAA domain QMA0440_02717 PF00480 ROK family QMA0440_02718 PF04381 Putative exonuclease, RdgC QMA0440_02719 PF06865 Pyrimidine/purine nucleoside phosphorylase QMA0440_02721 PF07302 AroM protein QMA0440_02725 PF01202 Shikimate kinase QMA0440_02726 PF07715 TonB-dependent Receptor Plug Domain QMA0440_02726 PF00593 TonB dependent receptor QMA0440_02731 PF07238 PilZ domain QMA0440_02731 PF07317 Flagellar regulator YcgR QMA0440_02732 PF00171 Aldehyde dehydrogenase family QMA0440_02733 PF01472 PUA domain QMA0440_02733 PF00696 Amino acid kinase family QMA0440_02734 PF07417 Sigma factor-binding transcriptional regulator Crl QMA0440_02736 PF00156 Phosphoribosyl transferase domain QMA0440_02737 PF01546 Peptidase family M20/M25/M40 QMA0440_02737 PF07687 Peptidase dimerisation domain QMA0440_02738 PF11799 impB/mucB/samB family C-terminal domain QMA0440_02738 PF11798 IMS family HHH motif QMA0440_02738 PF00817 impB/mucB/samB family QMA0440_02739 PF03009 Glycerophosphoryl diester phosphodiesterase family QMA0440_02740 PF04400 (Na+)-NQR maturation NqrM QMA0440_02741 PF02424 ApbE family QMA0440_02742 PF00970 Oxidoreductase FAD-binding domain QMA0440_02742 PF00175 Oxidoreductase NAD-binding domain QMA0440_02742 PF00111 2Fe-2S iron-sulfur cluster binding domain QMA0440_02743 PF02508 Rnf-Nqr subunit, membrane protein QMA0440_02744 PF02508 Rnf-Nqr subunit, membrane protein QMA0440_02745 PF04205 FMN-binding domain QMA0440_02746 PF03116 NQR2, RnfD, RnfE family QMA0440_02747 PF11973 NQRA C-terminal domain QMA0440_02747 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) QMA0440_02748 PF03734 L,D-transpeptidase catalytic domain QMA0440_02749 PF13230 Glutamine amidotransferases class-II QMA0440_02750 PF13580 SIS domain QMA0440_02751 PF00441 Acyl-CoA dehydrogenase, C-terminal domain QMA0440_02751 PF02771 Acyl-CoA dehydrogenase, N-terminal domain QMA0440_02751 PF09317 Domain of unknown function (DUF1974) QMA0440_02753 PF00929 Exonuclease QMA0440_02754 PF00075 RNase H QMA0440_02755 PF08241 Methyltransferase domain QMA0440_02756 PF16123 Hydroxyacylglutathione hydrolase C-terminus QMA0440_02756 PF00753 Metallo-beta-lactamase superfamily QMA0440_02757 PF01464 Transglycosylase SLT domain QMA0440_02757 PF01476 LysM domain QMA0440_02758 PF03372 Endonuclease/Exonuclease/phosphatase family QMA0440_02766 PF10431 C-terminal, D2-small domain, of ClpB protein QMA0440_02766 PF07724 AAA domain (Cdc48 subfamily) QMA0440_02766 PF02861 Clp amino terminal domain, pathogenicity island component QMA0440_02766 PF00004 ATPase family associated with various cellular activities (AAA) QMA0440_02766 PF17871 AAA lid domain QMA0440_02768 PF00849 RNA pseudouridylate synthase QMA0440_02768 PF01479 S4 domain QMA0440_02769 PF13525 Outer membrane lipoprotein QMA0440_02770 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein QMA0440_02771 PF01817 Chorismate mutase type II QMA0440_02771 PF00800 Prephenate dehydratase QMA0440_02772 PF02153 Prephenate dehydrogenase QMA0440_02772 PF01817 Chorismate mutase type II QMA0440_02773 PF00793 DAHP synthetase I family QMA0440_02774 PF04397 LytTr DNA-binding domain QMA0440_02774 PF00072 Response regulator receiver domain QMA0440_02775 PF03605 Anaerobic c4-dicarboxylate membrane transporter QMA0440_02776 PF04338 Protein of unknown function, DUF481 QMA0440_02777 PF01245 Ribosomal protein L19 QMA0440_02778 PF01746 tRNA (Guanine-1)-methyltransferase QMA0440_02779 PF05239 PRC-barrel domain QMA0440_02779 PF01782 RimM N-terminal domain QMA0440_02780 PF00886 Ribosomal protein S16 QMA0440_02781 PF02978 Signal peptide binding domain QMA0440_02781 PF02881 SRP54-type protein, helical bundle domain QMA0440_02781 PF00448 SRP54-type protein, GTPase domain QMA0440_02782 PF01578 Cytochrome C assembly protein QMA0440_02783 PF03471 Transporter associated domain QMA0440_02783 PF01595 Cyclin M transmembrane N-terminal domain QMA0440_02783 PF00571 CBS domain QMA0440_02784 PF02664 S-Ribosylhomocysteinase (LuxS) QMA0440_02785 PF04262 Glutamate-cysteine ligase QMA0440_02786 PF09335 SNARE associated Golgi protein QMA0440_02787 PF13419 Haloacid dehalogenase-like hydrolase QMA0440_02792 PF02599 Global regulator protein family QMA0440_02793 PF01411 tRNA synthetases class II (A) QMA0440_02793 PF02272 DHHA1 domain QMA0440_02793 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain QMA0440_02794 PF02631 RecX family QMA0440_02795 PF00154 recA bacterial DNA recombination protein QMA0440_02796 PF02464 Competence-damaged protein QMA0440_02797 PF07690 Major Facilitator Superfamily QMA0440_02798 PF05683 Fumarase C-terminus QMA0440_02798 PF05681 Fumarate hydratase (Fumerase) QMA0440_02803 PF11356 Type II secretion system protein C QMA0440_02804 PF03958 Bacterial type II/III secretion system short domain QMA0440_02804 PF00263 Bacterial type II and III secretion system protein QMA0440_02806 PF00482 Type II secretion system (T2SS), protein F QMA0440_02807 PF08334 Type II secretion system (T2SS), protein G QMA0440_02807 PF07963 Prokaryotic N-terminal methylation motif QMA0440_02808 PF12019 Type II transport protein GspH QMA0440_02808 PF07963 Prokaryotic N-terminal methylation motif QMA0440_02809 PF02501 Type II secretion system (T2SS), protein I QMA0440_02809 PF07963 Prokaryotic N-terminal methylation motif QMA0440_02810 PF11612 Type II secretion system (T2SS), protein J QMA0440_02810 PF07963 Prokaryotic N-terminal methylation motif QMA0440_02811 PF03934 Type II secretion system (T2SS), protein K QMA0440_02812 PF12693 GspL periplasmic domain QMA0440_02812 PF05134 Type II secretion system (T2SS), protein L QMA0440_02814 PF06750 Bacterial Peptidase A24 N-terminal domain QMA0440_02814 PF01478 Type IV leader peptidase family QMA0440_02815 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) QMA0440_02816 PF18416 N-acetylglucosamine binding protein domain 2 QMA0440_02816 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading QMA0440_02820 PF00550 Phosphopantetheine attachment site QMA0440_02825 PF07720 Tetratricopeptide repeat QMA0440_02826 PF01312 FlhB HrpN YscU SpaS Family QMA0440_02827 PF01311 Bacterial export proteins, family 1 QMA0440_02828 PF01313 Bacterial export proteins, family 3 QMA0440_02829 PF00813 FliP family QMA0440_02830 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term QMA0440_02833 PF18269 T3SS EscN ATPase C-terminal domain QMA0440_02833 PF02874 ATP synthase alpha/beta family, beta-barrel domain QMA0440_02833 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain QMA0440_02835 PF00771 FHIPEP family QMA0440_02836 PF07201 HrpJ-like domain QMA0440_02838 PF12833 Helix-turn-helix domain QMA0440_02842 PF01514 Secretory protein of YscJ/FliF family QMA0440_02847 PF01464 Transglycosylase SLT domain QMA0440_02850 PF00196 Bacterial regulatory proteins, luxR family QMA0440_02850 PF00072 Response regulator receiver domain QMA0440_02851 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_02851 PF00072 Response regulator receiver domain QMA0440_02851 PF09308 LuxQ, periplasmic QMA0440_02851 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_02853 PF13333 Integrase core domain QMA0440_02853 PF00665 Integrase core domain QMA0440_02853 PF13276 HTH-like domain QMA0440_02855 PF13683 Integrase core domain QMA0440_02855 PF13276 HTH-like domain QMA0440_02857 PF01527 Transposase QMA0440_02858 PF13276 HTH-like domain QMA0440_02858 PF13333 Integrase core domain QMA0440_02858 PF00665 Integrase core domain QMA0440_02862 PF00501 AMP-binding enzyme QMA0440_02862 PF13193 AMP-binding enzyme C-terminal domain QMA0440_02862 PF00668 Condensation domain QMA0440_02862 PF00550 Phosphopantetheine attachment site QMA0440_02865 PF01527 Transposase QMA0440_02866 PF13276 HTH-like domain QMA0440_02866 PF13683 Integrase core domain QMA0440_02869 PF00488 MutS domain V QMA0440_02869 PF01624 MutS domain I QMA0440_02869 PF05188 MutS domain II QMA0440_02869 PF05192 MutS domain III QMA0440_02869 PF05190 MutS family domain IV QMA0440_02870 PF04539 Sigma-70 region 3 QMA0440_02870 PF04545 Sigma-70, region 4 QMA0440_02870 PF00140 Sigma-70 factor, region 1.2 QMA0440_02870 PF04542 Sigma-70 region 2 QMA0440_02871 PF01476 LysM domain QMA0440_02871 PF01551 Peptidase family M23 QMA0440_02873 PF01975 Survival protein SurE QMA0440_02874 PF01142 tRNA pseudouridine synthase D (TruD) QMA0440_02875 PF02542 YgbB family QMA0440_02876 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase QMA0440_02877 PF04977 Septum formation initiator QMA0440_02878 PF12084 Protein of unknown function (DUF3561) QMA0440_02880 PF00009 Elongation factor Tu GTP binding domain QMA0440_02881 PF01507 Phosphoadenosine phosphosulfate reductase family QMA0440_02882 PF14824 Sirohaem biosynthesis protein central QMA0440_02882 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases QMA0440_02882 PF10414 Sirohaem synthase dimerisation region QMA0440_02883 PF04389 Peptidase family M28 QMA0440_02886 PF01507 Phosphoadenosine phosphosulfate reductase family QMA0440_02887 PF01077 Nitrite and sulphite reductase 4Fe-4S domain QMA0440_02887 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain QMA0440_02888 PF00667 FAD binding domain QMA0440_02888 PF00258 Flavodoxin QMA0440_02888 PF00175 Oxidoreductase NAD-binding domain QMA0440_02889 PF01242 6-pyruvoyl tetrahydropterin synthase QMA0440_02890 PF04055 Radical SAM superfamily QMA0440_02891 PF00113 Enolase, C-terminal TIM barrel domain QMA0440_02891 PF03952 Enolase, N-terminal domain QMA0440_02892 PF06418 CTP synthase N-terminus QMA0440_02892 PF00117 Glutamine amidotransferase class-I QMA0440_02893 PF03819 MazG nucleotide pyrophosphohydrolase domain QMA0440_02894 PF13291 ACT domain QMA0440_02894 PF02824 TGS domain QMA0440_02894 PF04607 Region found in RelA / SpoT proteins QMA0440_02895 PF01938 TRAM domain QMA0440_02895 PF05958 tRNA (Uracil-5-)-methyltransferase QMA0440_02896 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) QMA0440_02896 PF00672 HAMP domain QMA0440_02896 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_02896 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_02896 PF01627 Hpt domain QMA0440_02896 PF00072 Response regulator receiver domain QMA0440_02897 PF00595 PDZ domain QMA0440_02898 PF13286 Phosphohydrolase-associated domain QMA0440_02898 PF01966 HD domain QMA0440_02899 PF01048 Phosphorylase superfamily QMA0440_02900 PF01497 Periplasmic binding protein QMA0440_02901 PF03458 UPF0126 domain QMA0440_02902 PF01521 Iron-sulphur cluster biosynthesis QMA0440_02903 PF00654 Voltage gated chloride channel QMA0440_02904 PF00202 Aminotransferase class-III QMA0440_02905 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal QMA0440_02905 PF00912 Transglycosylase QMA0440_02905 PF00905 Penicillin binding protein transpeptidase domain QMA0440_02905 PF14814 Bifunctional transglycosylase second domain QMA0440_02906 PF08482 ATP-dependent helicase C-terminal QMA0440_02906 PF00271 Helicase conserved C-terminal domain QMA0440_02906 PF04408 Helicase associated domain (HA2) QMA0440_02906 PF00270 DEAD/DEAH box helicase QMA0440_02907 PF02834 LigT like Phosphoesterase QMA0440_02908 PF03749 Sugar fermentation stimulation protein RE domain QMA0440_02908 PF17746 SfsA N-terminal OB domain QMA0440_02909 PF01258 Prokaryotic dksA/traR C4-type zinc finger QMA0440_02910 PF00749 tRNA synthetases class I (E and Q), catalytic domain QMA0440_02911 PF01743 Poly A polymerase head domain QMA0440_02911 PF12626 Polymerase A arginine-rich C-terminus QMA0440_02911 PF12627 Probable RNA and SrmB- binding site of polymerase A QMA0440_02912 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) QMA0440_02913 PF02548 Ketopantoate hydroxymethyltransferase QMA0440_02914 PF02569 Pantoate-beta-alanine ligase QMA0440_02915 PF02261 Aspartate decarboxylase QMA0440_02916 PF01522 Polysaccharide deacetylase QMA0440_02917 PF01061 ABC-2 type transporter QMA0440_02918 PF00005 ABC transporter QMA0440_02919 PF00484 Carbonic anhydrase QMA0440_02920 PF00156 Phosphoribosyl transferase domain QMA0440_02921 PF10518 TAT (twin-arginine translocation) pathway signal sequence QMA0440_02921 PF00394 Multicopper oxidase QMA0440_02921 PF07732 Multicopper oxidase QMA0440_02921 PF07731 Multicopper oxidase QMA0440_02922 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) QMA0440_02923 PF17284 Spermidine synthase tetramerisation domain QMA0440_02924 PF02675 S-adenosylmethionine decarboxylase QMA0440_02925 PF00892 EamA-like transporter family QMA0440_02926 PF06062 Uncharacterised protein family (UPF0231) QMA0440_02928 PF11791 Aconitate B N-terminal domain QMA0440_02928 PF06434 Aconitate hydratase 2 N-terminus QMA0440_02928 PF00330 Aconitase family (aconitate hydratase) QMA0440_02930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain QMA0440_02930 PF07992 Pyridine nucleotide-disulphide oxidoreductase QMA0440_02931 PF02817 e3 binding domain QMA0440_02931 PF00364 Biotin-requiring enzyme QMA0440_02931 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) QMA0440_02932 PF00456 Transketolase, thiamine diphosphate binding domain QMA0440_02932 PF17831 Pyruvate dehydrogenase E1 component middle domain QMA0440_02933 PF07729 FCD domain QMA0440_02933 PF00392 Bacterial regulatory proteins, gntR family QMA0440_02934 PF00324 Amino acid permease QMA0440_02935 PF17113 Regulatory signalling modulator protein AmpE QMA0440_02936 PF01510 N-acetylmuramoyl-L-alanine amidase QMA0440_02937 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain QMA0440_02937 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain QMA0440_02938 PF07963 Prokaryotic N-terminal methylation motif QMA0440_02939 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain QMA0440_02939 PF00437 Type II/IV secretion system protein QMA0440_02940 PF00482 Type II secretion system (T2SS), protein F QMA0440_02941 PF00478 IMP dehydrogenase / GMP reductase domain QMA0440_02942 PF01121 Dephospho-CoA kinase QMA0440_02943 PF07072 Cell division protein QMA0440_02944 PF03884 DNA gyrase inhibitor YacG QMA0440_02945 PF00293 NUDIX domain QMA0440_02946 PF07516 SecA Wing and Scaffold domain QMA0440_02946 PF01043 SecA preprotein cross-linking domain QMA0440_02946 PF07517 SecA DEAD-like domain QMA0440_02946 PF02810 SEC-C motif QMA0440_02947 PF06558 Secretion monitor precursor protein (SecM) QMA0440_02949 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase QMA0440_02950 PF00091 Tubulin/FtsZ family, GTPase domain QMA0440_02950 PF12327 FtsZ family, C-terminal domain QMA0440_02951 PF02491 SHS2 domain inserted in FTSA QMA0440_02952 PF03799 Cell division protein FtsQ QMA0440_02952 PF08478 POTRA domain, FtsQ-type QMA0440_02953 PF07478 D-ala D-ala ligase C-terminus QMA0440_02953 PF01820 D-ala D-ala ligase N-terminus QMA0440_02954 PF08245 Mur ligase middle domain QMA0440_02954 PF01225 Mur ligase family, catalytic domain QMA0440_02954 PF02875 Mur ligase family, glutamate ligase domain QMA0440_02955 PF04101 Glycosyltransferase family 28 C-terminal domain QMA0440_02955 PF03033 Glycosyltransferase family 28 N-terminal domain QMA0440_02956 PF01098 Cell cycle protein QMA0440_02957 PF02875 Mur ligase family, glutamate ligase domain QMA0440_02957 PF08245 Mur ligase middle domain QMA0440_02958 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 QMA0440_02958 PF00953 Glycosyl transferase family 4 QMA0440_02959 PF01225 Mur ligase family, catalytic domain QMA0440_02959 PF08245 Mur ligase middle domain QMA0440_02959 PF02875 Mur ligase family, glutamate ligase domain QMA0440_02960 PF01225 Mur ligase family, catalytic domain QMA0440_02960 PF02875 Mur ligase family, glutamate ligase domain QMA0440_02960 PF08245 Mur ligase middle domain QMA0440_02961 PF00905 Penicillin binding protein transpeptidase domain QMA0440_02961 PF03717 Penicillin-binding Protein dimerisation domain QMA0440_02962 PF04999 Cell division protein FtsL QMA0440_02963 PF01795 MraW methylase family QMA0440_02964 PF02381 MraZ protein, putative antitoxin-like QMA0440_02965 PF06610 L-alanine exporter QMA0440_02966 PF00356 Bacterial regulatory proteins, lacI family QMA0440_02966 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family QMA0440_02967 PF10369 Small subunit of acetolactate synthase QMA0440_02968 PF00205 Thiamine pyrophosphate enzyme, central domain QMA0440_02968 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain QMA0440_02968 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain QMA0440_02969 PF00501 AMP-binding enzyme QMA0440_02970 PF03466 LysR substrate binding domain QMA0440_02970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_02971 PF08502 LeuA allosteric (dimerisation) domain QMA0440_02971 PF00682 HMGL-like QMA0440_02972 PF00180 Isocitrate/isopropylmalate dehydrogenase QMA0440_02973 PF00330 Aconitase family (aconitate hydratase) QMA0440_02974 PF00694 Aconitase C-terminal domain QMA0440_02975 PF07690 Major Facilitator Superfamily QMA0440_02977 PF12793 Sugar transport-related sRNA regulator N-term QMA0440_02977 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle QMA0440_02979 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_02980 PF00005 ABC transporter QMA0440_02981 PF09335 SNARE associated Golgi protein QMA0440_02982 PF00136 DNA polymerase family B QMA0440_02982 PF03104 DNA polymerase family B, exonuclease domain QMA0440_02984 PF00271 Helicase conserved C-terminal domain QMA0440_02984 PF00176 SNF2 family N-terminal domain QMA0440_02984 PF18339 RapA N-terminal Tudor like domain 1 QMA0440_02984 PF18337 RapA N-terminal Tudor like domain QMA0440_02984 PF12137 RNA polymerase recycling family C-terminal QMA0440_02985 PF00849 RNA pseudouridylate synthase QMA0440_02986 PF05099 Tellurite resistance protein TerB QMA0440_02986 PF00226 DnaJ domain QMA0440_02987 PF03968 OstA-like protein QMA0440_02987 PF04453 LPS transport system D QMA0440_02988 PF00639 PPIC-type PPIASE domain QMA0440_02988 PF09312 SurA N-terminal domain QMA0440_02989 PF04166 Pyridoxal phosphate biosynthetic protein PdxA QMA0440_02990 PF00398 Ribosomal RNA adenine dimethylase QMA0440_02991 PF04379 ApaG domain QMA0440_02992 PF00149 Calcineurin-like phosphoesterase QMA0440_02994 PF00186 Dihydrofolate reductase QMA0440_02995 PF12821 Threonine/Serine exporter, ThrE QMA0440_02996 PF06738 Putative threonine/serine exporter QMA0440_02997 PF01810 LysE type translocator QMA0440_02998 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain QMA0440_02998 PF02142 MGS-like domain QMA0440_02998 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain QMA0440_02999 PF00117 Glutamine amidotransferase class-I QMA0440_02999 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain QMA0440_03000 PF01113 Dihydrodipicolinate reductase, N-terminus QMA0440_03000 PF05173 Dihydrodipicolinate reductase, C-terminus QMA0440_03001 PF02401 LytB protein QMA0440_03002 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase QMA0440_03003 PF01252 Signal peptidase (SPase) II QMA0440_03004 PF08264 Anticodon-binding domain of tRNA QMA0440_03004 PF06827 Zinc finger found in FPG and IleRS QMA0440_03004 PF00133 tRNA synthetases class I (I, L, M and V) QMA0440_03005 PF01687 Riboflavin kinase QMA0440_03005 PF06574 FAD synthetase QMA0440_03006 PF01649 Ribosomal protein S20 QMA0440_03007 PF03466 LysR substrate binding domain QMA0440_03007 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_03008 PF06965 Na+/H+ antiporter 1 QMA0440_03009 PF00684 DnaJ central domain QMA0440_03009 PF01556 DnaJ C terminal domain QMA0440_03009 PF00226 DnaJ domain QMA0440_03010 PF00012 Hsp70 protein QMA0440_03011 PF01184 GPR1/FUN34/yaaH family QMA0440_03013 PF07690 Major Facilitator Superfamily QMA0440_03014 PF00994 Probable molybdopterin binding domain QMA0440_03015 PF00923 Transaldolase/Fructose-6-phosphate aldolase QMA0440_03016 PF03883 Peroxide stress protein YaaA QMA0440_03017 PF14821 Threonine synthase N terminus QMA0440_03017 PF00291 Pyridoxal-phosphate dependent enzyme QMA0440_03018 PF00288 GHMP kinases N terminal domain QMA0440_03018 PF08544 GHMP kinases C terminal QMA0440_03019 PF00696 Amino acid kinase family QMA0440_03019 PF03447 Homoserine dehydrogenase, NAD binding domain QMA0440_03019 PF13840 ACT domain QMA0440_03019 PF00742 Homoserine dehydrogenase QMA0440_03019 PF01842 ACT domain QMA0440_03020 PF00486 Transcriptional regulatory protein, C terminal QMA0440_03020 PF00072 Response regulator receiver domain QMA0440_03021 PF05981 CreA protein QMA0440_03022 PF12833 Helix-turn-helix domain QMA0440_03022 PF06445 GyrI-like small molecule binding domain QMA0440_03023 PF00300 Histidine phosphatase superfamily (branch 1) QMA0440_03024 PF01931 Protein of unknown function DUF84 QMA0440_03025 PF01371 Trp repressor protein QMA0440_03026 PF14718 Soluble lytic murein transglycosylase L domain QMA0440_03026 PF01464 Transglycosylase SLT domain QMA0440_03027 PF00690 Cation transporter/ATPase, N-terminus QMA0440_03027 PF00689 Cation transporting ATPase, C-terminus QMA0440_03030 PF00691 OmpA family QMA0440_03031 PF12848 ABC transporter QMA0440_03031 PF00005 ABC transporter QMA0440_03032 PF01381 Helix-turn-helix QMA0440_03032 PF13521 AAA domain QMA0440_03033 PF18073 Rubredoxin metal binding domain QMA0440_03034 PF18429 Domain of unknown function (DUF5609) QMA0440_03035 PF10144 Bacterial virulence factor haemolysin QMA0440_03036 PF01048 Phosphorylase superfamily QMA0440_03037 PF01676 Metalloenzyme superfamily QMA0440_03038 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain QMA0440_03038 PF02885 Glycosyl transferase family, helical bundle domain QMA0440_03038 PF00591 Glycosyl transferase family, a/b domain QMA0440_03039 PF01791 DeoC/LacD family aldolase QMA0440_03040 PF07662 Na+ dependent nucleoside transporter C-terminus QMA0440_03040 PF07670 Nucleoside recognition QMA0440_03040 PF01773 Na+ dependent nucleoside transporter N-terminus QMA0440_03041 PF01026 TatD related DNase QMA0440_03042 PF01734 Patatin-like phospholipase QMA0440_03043 PF07043 Protein of unknown function (DUF1328) QMA0440_03044 PF04972 BON domain QMA0440_03045 PF00009 Elongation factor Tu GTP binding domain QMA0440_03045 PF03144 Elongation factor Tu domain 2 QMA0440_03045 PF16658 Class II release factor RF3, C-terminal domain QMA0440_03046 PF00583 Acetyltransferase (GNAT) family QMA0440_03047 PF03603 DNA polymerase III psi subunit QMA0440_03048 PF05175 Methyltransferase small domain QMA0440_03048 PF08468 Methyltransferase small domain N-terminal QMA0440_03052 PF07256 Protein of unknown function (DUF1435) QMA0440_03053 PF00990 Diguanylate cyclase, GGDEF domain QMA0440_03054 PF00158 Sigma-54 interaction domain QMA0440_03054 PF00989 PAS fold QMA0440_03054 PF02954 Bacterial regulatory protein, Fis family QMA0440_03055 PF00381 PTS HPr component phosphorylation site QMA0440_03055 PF05524 PEP-utilising enzyme, N-terminal QMA0440_03055 PF03610 PTS system fructose IIA component QMA0440_03055 PF00391 PEP-utilising enzyme, mobile domain QMA0440_03056 PF02734 DAK2 domain QMA0440_03057 PF02733 Dak1 domain QMA0440_03058 PF00465 Iron-containing alcohol dehydrogenase QMA0440_03059 PF00873 AcrB/AcrD/AcrF family QMA0440_03060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion QMA0440_03062 PF01075 Glycosyltransferase family 9 (heptosyltransferase) QMA0440_03063 PF10696 Protein of unknown function (DUF2501) QMA0440_03065 PF01116 Fructose-bisphosphate aldolase class-II QMA0440_03067 PF00884 Sulfatase QMA0440_03068 PF04055 Radical SAM superfamily QMA0440_03068 PF13186 Iron-sulfur cluster-binding domain QMA0440_03071 PF04962 KduI/IolB family QMA0440_03072 PF01979 Amidohydrolase family QMA0440_03074 PF03613 PTS system mannose/fructose/sorbose family IID component QMA0440_03075 PF03609 PTS system sorbose-specific iic component QMA0440_03076 PF03830 PTS system sorbose subfamily IIB component QMA0440_03077 PF01380 SIS domain QMA0440_03078 PF08013 Tagatose 6 phosphate kinase QMA0440_03079 PF08220 DeoR-like helix-turn-helix domain QMA0440_03079 PF00455 DeoR C terminal sensor domain QMA0440_03080 PF00884 Sulfatase QMA0440_03081 PF02278 Polysaccharide lyase family 8, super-sandwich domain QMA0440_03081 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain QMA0440_03081 PF09093 Lyase, catalytic QMA0440_03081 PF09092 Lyase, N terminal QMA0440_03084 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain QMA0440_03084 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain QMA0440_03084 PF02278 Polysaccharide lyase family 8, super-sandwich domain QMA0440_03085 PF06178 Oligogalacturonate-specific porin protein (KdgM) QMA0440_03086 PF01344 Kelch motif QMA0440_03096 PF05016 ParE toxin of type II toxin-antitoxin system, parDE QMA0440_03097 PF04221 RelB antitoxin QMA0440_03098 PF00589 Phage integrase family QMA0440_03098 PF13356 Arm DNA-binding domain QMA0440_03100 PF13676 TIR domain QMA0440_03101 PF01527 Transposase QMA0440_03102 PF13276 HTH-like domain QMA0440_03102 PF13333 Integrase core domain QMA0440_03102 PF00665 Integrase core domain QMA0440_03104 PF07728 AAA domain (dynein-related subfamily) QMA0440_03104 PF12102 Domain of unknown function (DUF3578) QMA0440_03108 PF01420 Type I restriction modification DNA specificity domain QMA0440_03109 PF02384 N-6 DNA Methylase QMA0440_03110 PF00271 Helicase conserved C-terminal domain QMA0440_03110 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) QMA0440_03110 PF08463 EcoEI R protein C-terminal QMA0440_03110 PF04851 Type III restriction enzyme, res subunit QMA0440_03111 PF00589 Phage integrase family QMA0440_03111 PF13356 Arm DNA-binding domain QMA0440_03113 PF03739 Lipopolysaccharide export system permease LptF/LptG QMA0440_03114 PF03739 Lipopolysaccharide export system permease LptF/LptG QMA0440_03115 PF02789 Cytosol aminopeptidase family, N-terminal domain QMA0440_03115 PF00883 Cytosol aminopeptidase family, catalytic domain QMA0440_03116 PF04364 DNA polymerase III chi subunit, HolC QMA0440_03117 PF00133 tRNA synthetases class I (I, L, M and V) QMA0440_03117 PF08264 Anticodon-binding domain of tRNA QMA0440_03117 PF10458 Valyl tRNA synthetase tRNA binding arm QMA0440_03118 PF00583 Acetyltransferase (GNAT) family QMA0440_03119 PF06877 Regulator of ribonuclease activity B QMA0440_03120 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain QMA0440_03120 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain QMA0440_03121 PF03477 ATP cone domain QMA0440_03121 PF13597 Anaerobic ribonucleoside-triphosphate reductase QMA0440_03123 PF06754 Phosphonate metabolism protein PhnG QMA0440_03124 PF05845 Bacterial phosphonate metabolism protein (PhnH) QMA0440_03125 PF05861 Bacterial phosphonate metabolism protein (PhnI) QMA0440_03126 PF06007 Phosphonate metabolism protein PhnJ QMA0440_03127 PF00005 ABC transporter QMA0440_03128 PF00005 ABC transporter QMA0440_03129 PF07969 Amidohydrolase family QMA0440_03131 PF12706 Beta-lactamase superfamily domain QMA0440_03132 PF13460 NAD(P)H-binding QMA0440_03135 PF01276 Orn/Lys/Arg decarboxylase, major domain QMA0440_03135 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain QMA0440_03135 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain QMA0440_03136 PF13520 Amino acid permease QMA0440_03137 PF01541 GIY-YIG catalytic domain QMA0440_03138 PF13508 Acetyltransferase (GNAT) domain QMA0440_03142 PF03313 Serine dehydratase alpha chain QMA0440_03144 PF00296 Luciferase-like monooxygenase QMA0440_03145 PF12343 Cold shock protein DEAD box A QMA0440_03145 PF00271 Helicase conserved C-terminal domain QMA0440_03145 PF03880 DbpA RNA binding domain QMA0440_03145 PF00270 DEAD/DEAH box helicase QMA0440_03146 PF13181 Tetratricopeptide repeat QMA0440_03146 PF07719 Tetratricopeptide repeat QMA0440_03147 PF00575 S1 RNA binding domain QMA0440_03147 PF03725 3' exoribonuclease family, domain 2 QMA0440_03147 PF01138 3' exoribonuclease family, domain 1 QMA0440_03147 PF00013 KH domain QMA0440_03147 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain QMA0440_03148 PF00312 Ribosomal protein S15 QMA0440_03149 PF09157 Pseudouridine synthase II TruB, C-terminal QMA0440_03149 PF16198 tRNA pseudouridylate synthase B C-terminal domain QMA0440_03149 PF01509 TruB family pseudouridylate synthase (N terminal domain) QMA0440_03150 PF02033 Ribosome-binding factor A QMA0440_03151 PF04760 Translation initiation factor IF-2, N-terminal region QMA0440_03151 PF00009 Elongation factor Tu GTP binding domain QMA0440_03151 PF03144 Elongation factor Tu domain 2 QMA0440_03151 PF11987 Translation-initiation factor 2 QMA0440_03151 PF08364 Bacterial translation initiation factor IF-2 associated region QMA0440_03152 PF13184 NusA-like KH domain QMA0440_03152 PF00575 S1 RNA binding domain QMA0440_03152 PF08529 NusA N-terminal domain QMA0440_03153 PF02576 RimP N-terminal domain QMA0440_03153 PF17384 RimP C-terminal SH3 domain QMA0440_03156 PF03840 Preprotein translocase SecG subunit QMA0440_03157 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I QMA0440_03157 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II QMA0440_03157 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III QMA0440_03157 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain QMA0440_03158 PF00809 Pterin binding enzyme QMA0440_03159 PF00004 ATPase family associated with various cellular activities (AAA) QMA0440_03159 PF17862 AAA+ lid domain QMA0440_03159 PF06480 FtsH Extracellular QMA0440_03159 PF01434 Peptidase family M41 QMA0440_03160 PF01728 FtsJ-like methyltransferase QMA0440_03161 PF01985 CRS1 / YhbY (CRM) domain QMA0440_03162 PF01272 Transcription elongation factor, GreA/GreB, C-term QMA0440_03162 PF03449 Transcription elongation factor, N-terminal QMA0440_03163 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family QMA0440_03164 PF00072 Response regulator receiver domain QMA0440_03164 PF00486 Transcriptional regulatory protein, C terminal QMA0440_03165 PF00672 HAMP domain QMA0440_03165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_03165 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_03166 PF01018 GTP1/OBG QMA0440_03166 PF01926 50S ribosome-binding GTPase QMA0440_03167 PF00892 EamA-like transporter family QMA0440_03168 PF01016 Ribosomal L27 protein QMA0440_03169 PF00829 Ribosomal prokaryotic L21 protein QMA0440_03170 PF00348 Polyprenyl synthetase QMA0440_03173 PF13693 Winged helix-turn-helix DNA-binding QMA0440_03174 PF00056 lactate/malate dehydrogenase, NAD binding domain QMA0440_03174 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain QMA0440_03175 PF02863 Arginine repressor, C-terminal domain QMA0440_03175 PF01316 Arginine repressor, DNA binding domain QMA0440_03176 PF08245 Mur ligase middle domain QMA0440_03176 PF02875 Mur ligase family, glutamate ligase domain QMA0440_03176 PF01225 Mur ligase family, catalytic domain QMA0440_03177 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain QMA0440_03178 PF00719 Inorganic pyrophosphatase QMA0440_03179 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like QMA0440_03180 PF04357 TamB, inner membrane protein subunit of TAM complex QMA0440_03181 PF07244 Surface antigen variable number repeat QMA0440_03181 PF01103 Surface antigen QMA0440_03181 PF17243 POTRA domain TamA domain 1 QMA0440_03182 PF01625 Peptide methionine sulfoxide reductase QMA0440_03183 PF01595 Cyclin M transmembrane N-terminal domain QMA0440_03183 PF00571 CBS domain QMA0440_03183 PF03471 Transporter associated domain QMA0440_03184 PF06526 Protein of unknown function (DUF1107) QMA0440_03185 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) QMA0440_03186 PF00459 Inositol monophosphatase family QMA0440_03187 PF00149 Calcineurin-like phosphoesterase QMA0440_03187 PF02872 5'-nucleotidase, C-terminal domain QMA0440_03188 PF01814 Hemerythrin HHE cation binding domain QMA0440_03188 PF04405 Domain of Unknown function (DUF542) QMA0440_03189 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase QMA0440_03189 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase QMA0440_03190 PF08525 Opacity-associated protein A N-terminal motif QMA0440_03190 PF04225 Opacity-associated protein A LysM-like domain QMA0440_03191 PF03948 Ribosomal protein L9, C-terminal domain QMA0440_03191 PF01281 Ribosomal protein L9, N-terminal domain QMA0440_03192 PF01084 Ribosomal protein S18 QMA0440_03193 PF01250 Ribosomal protein S6 QMA0440_03195 PF00326 Prolyl oligopeptidase family QMA0440_03199 PF13953 PapC C-terminal domain QMA0440_03199 PF13954 PapC N-terminal domain QMA0440_03199 PF00577 Outer membrane usher protein QMA0440_03200 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain QMA0440_03204 PF00588 SpoU rRNA Methylase family QMA0440_03204 PF08032 RNA 2'-O ribose methyltransferase substrate binding QMA0440_03205 PF00575 S1 RNA binding domain QMA0440_03205 PF00773 RNB domain QMA0440_03205 PF08206 Ribonuclease B OB domain QMA0440_03205 PF08461 Ribonuclease R winged-helix domain QMA0440_03205 PF17876 Cold shock domain QMA0440_03206 PF02082 Transcriptional regulator QMA0440_03207 PF00709 Adenylosuccinate synthetase QMA0440_03208 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) QMA0440_03209 PF01145 SPFH domain / Band 7 family QMA0440_03210 PF12221 Bacterial membrane protein N terminal QMA0440_03210 PF01145 SPFH domain / Band 7 family QMA0440_03211 PF01926 50S ribosome-binding GTPase QMA0440_03211 PF13167 GTP-binding GTPase N-terminal QMA0440_03211 PF16360 GTP-binding GTPase Middle Region QMA0440_03212 PF17209 Hfq protein QMA0440_03214 PF08676 MutL C terminal dimerisation domain QMA0440_03214 PF01119 DNA mismatch repair protein, C-terminal domain QMA0440_03215 PF01520 N-acetylmuramoyl-L-alanine amidase QMA0440_03216 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE QMA0440_03217 PF01256 Carbohydrate kinase QMA0440_03217 PF03853 YjeF-related protein N-terminus QMA0440_03218 PF08331 Domain of unknown function (DUF1730) QMA0440_03222 PF00929 Exonuclease QMA0440_03223 PF03193 RsgA GTPase QMA0440_03224 PF02666 Phosphatidylserine decarboxylase QMA0440_03225 PF12795 Mechanosensitive ion channel porin domain QMA0440_03225 PF00924 Mechanosensitive ion channel QMA0440_03225 PF12794 Mechanosensitive ion channel inner membrane domain 1 QMA0440_03226 PF00152 tRNA synthetases class II (D, K and N) QMA0440_03227 PF00890 FAD binding domain QMA0440_03227 PF02910 Fumarate reductase flavoprotein C-term QMA0440_03228 PF13183 4Fe-4S dicluster domain QMA0440_03228 PF13085 2Fe-2S iron-sulfur cluster binding domain QMA0440_03229 PF02300 Fumarate reductase subunit C QMA0440_03230 PF02313 Fumarate reductase subunit D QMA0440_03231 PF08212 Lipocalin-like domain QMA0440_03232 PF00893 Small Multidrug Resistance protein QMA0440_03234 PF00419 Fimbrial protein QMA0440_03235 PF00577 Outer membrane usher protein QMA0440_03235 PF13954 PapC N-terminal domain QMA0440_03235 PF13953 PapC C-terminal domain QMA0440_03236 PF02753 Pili assembly chaperone PapD, C-terminal domain QMA0440_03236 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain QMA0440_03238 PF00196 Bacterial regulatory proteins, luxR family QMA0440_03239 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading QMA0440_03239 PF18416 N-acetylglucosamine binding protein domain 2 QMA0440_03240 PF01132 Elongation factor P (EF-P) OB domain QMA0440_03240 PF08207 Elongation factor P (EF-P) KOW-like domain QMA0440_03240 PF09285 Elongation factor P, C-terminal QMA0440_03241 PF04055 Radical SAM superfamily QMA0440_03242 PF13698 Domain of unknown function (DUF4156) QMA0440_03243 PF00118 TCP-1/cpn60 chaperonin family QMA0440_03244 PF00166 Chaperonin 10 Kd subunit QMA0440_03245 PF04186 FxsA cytoplasmic membrane protein QMA0440_03246 PF00206 Lyase QMA0440_03246 PF10415 Fumarase C C-terminus QMA0440_03247 PF03605 Anaerobic c4-dicarboxylate membrane transporter QMA0440_03248 PF03091 CutA1 divalent ion tolerance protein QMA0440_03249 PF11412 Disulphide bond corrector protein DsbC QMA0440_03249 PF02683 Cytochrome C biogenesis protein transmembrane region QMA0440_03254 PF02350 UDP-N-acetylglucosamine 2-epimerase QMA0440_03255 PF01370 NAD dependent epimerase/dehydratase family QMA0440_03256 PF08485 Polysaccharide biosynthesis protein C-terminal QMA0440_03256 PF02719 Polysaccharide biosynthesis protein QMA0440_03257 PF00977 Histidine biosynthesis protein QMA0440_03258 PF00117 Glutamine amidotransferase class-I QMA0440_03259 PF00795 Carbon-nitrogen hydrolase QMA0440_03259 PF02540 NAD synthase QMA0440_03264 PF02348 Cytidylyltransferase QMA0440_03264 PF13472 GDSL-like Lipase/Acylhydrolase family QMA0440_03266 PF00483 Nucleotidyl transferase QMA0440_03268 PF08666 SAF domain QMA0440_03268 PF03102 NeuB family QMA0440_03269 PF02350 UDP-N-acetylglucosamine 2-epimerase QMA0440_03270 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family QMA0440_03271 PF02719 Polysaccharide biosynthesis protein QMA0440_03272 PF01206 Sulfurtransferase TusA QMA0440_03273 PF04143 Sulphur transport QMA0440_03274 PF00375 Sodium:dicarboxylate symporter family QMA0440_03275 PF00501 AMP-binding enzyme QMA0440_03275 PF16177 Acetyl-coenzyme A synthetase N-terminus QMA0440_03275 PF13193 AMP-binding enzyme C-terminal domain QMA0440_03276 PF04341 Protein of unknown function, DUF485 QMA0440_03277 PF00474 Sodium:solute symporter family QMA0440_03285 PF12724 Flavodoxin domain QMA0440_03286 PF02386 Cation transport protein QMA0440_03287 PF09186 Domain of unknown function (DUF1949) QMA0440_03287 PF01205 Uncharacterized protein family UPF0029 QMA0440_03288 PF00557 Metallopeptidase family M24 QMA0440_03289 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain QMA0440_03289 PF00378 Enoyl-CoA hydratase/isomerase QMA0440_03289 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain QMA0440_03290 PF02803 Thiolase, C-terminal domain QMA0440_03290 PF00108 Thiolase, N-terminal domain QMA0440_03291 PF00175 Oxidoreductase NAD-binding domain QMA0440_03291 PF00970 Oxidoreductase FAD-binding domain QMA0440_03292 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase QMA0440_03294 PF02357 Transcription termination factor nusG QMA0440_03295 PF00490 Delta-aminolevulinic acid dehydratase QMA0440_03296 PF01026 TatD related DNase QMA0440_03297 PF00902 Sec-independent protein translocase protein (TatC) QMA0440_03299 PF02416 mttA/Hcf106 family QMA0440_03300 PF03109 ABC1 family QMA0440_03301 PF02036 SCP-2 sterol transfer family QMA0440_03302 PF01209 ubiE/COQ5 methyltransferase family QMA0440_03303 PF02646 RmuC family QMA0440_03304 PF09335 SNARE associated Golgi protein QMA0440_03305 PF13722 5TM C-terminal transporter carbon starvation CstA QMA0440_03305 PF02554 Carbon starvation protein CstA QMA0440_03307 PF01048 Phosphorylase superfamily QMA0440_03308 PF01738 Dienelactone hydrolase family QMA0440_03309 PF08267 Cobalamin-independent synthase, N-terminal domain QMA0440_03309 PF01717 Cobalamin-independent synthase, Catalytic domain QMA0440_03310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_03310 PF03466 LysR substrate binding domain QMA0440_03311 PF00892 EamA-like transporter family QMA0440_03313 PF03009 Glycerophosphoryl diester phosphodiesterase family QMA0440_03314 PF17912 MalK OB fold domain QMA0440_03314 PF00005 ABC transporter QMA0440_03315 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_03316 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_03317 PF13416 Bacterial extracellular solute-binding protein QMA0440_03324 PF00005 ABC transporter QMA0440_03325 PF12399 Branched-chain amino acid ATP-binding cassette transporter QMA0440_03325 PF00005 ABC transporter QMA0440_03326 PF02653 Branched-chain amino acid transport system / permease component QMA0440_03326 PF11862 Domain of unknown function (DUF3382) QMA0440_03327 PF02653 Branched-chain amino acid transport system / permease component QMA0440_03328 PF13458 Periplasmic binding protein QMA0440_03329 PF12568 Acetyltransferase (GNAT) domain, PanZ QMA0440_03330 PF02595 Glycerate kinase family QMA0440_03331 PF02447 GntP family permease QMA0440_03332 PF05651 Putative sugar diacid recognition QMA0440_03332 PF17853 GGDEF-like domain QMA0440_03332 PF13556 PucR C-terminal helix-turn-helix domain QMA0440_03333 PF00140 Sigma-70 factor, region 1.2 QMA0440_03333 PF04545 Sigma-70, region 4 QMA0440_03333 PF04542 Sigma-70 region 2 QMA0440_03334 PF18075 FtsX extracellular domain QMA0440_03334 PF02687 FtsX-like permease family QMA0440_03335 PF00005 ABC transporter QMA0440_03336 PF02881 SRP54-type protein, helical bundle domain QMA0440_03336 PF00448 SRP54-type protein, GTPase domain QMA0440_03336 PF02881 SRP54-type protein, helical bundle domain QMA0440_03336 PF00448 SRP54-type protein, GTPase domain QMA0440_03338 PF06611 Protein of unknown function (DUF1145) QMA0440_03341 PF07947 YhhN family QMA0440_03342 PF00403 Heavy-metal-associated domain QMA0440_03343 PF01206 Sulfurtransferase TusA QMA0440_03344 PF02592 Putative vitamin uptake transporter QMA0440_03345 PF08786 DcrB QMA0440_03346 PF02754 Cysteine-rich domain QMA0440_03346 PF13183 4Fe-4S dicluster domain QMA0440_03347 PF00890 FAD binding domain QMA0440_03348 PF04324 BFD-like [2Fe-2S] binding domain QMA0440_03348 PF01266 FAD dependent oxidoreductase QMA0440_03349 PF07690 Major Facilitator Superfamily QMA0440_03350 PF03009 Glycerophosphoryl diester phosphodiesterase family QMA0440_03352 PF12146 Serine aminopeptidase, S33 QMA0440_03353 PF01810 LysE type translocator QMA0440_03354 PF09382 RQC domain QMA0440_03354 PF16124 RecQ zinc-binding QMA0440_03354 PF00271 Helicase conserved C-terminal domain QMA0440_03354 PF00570 HRDC domain QMA0440_03354 PF00270 DEAD/DEAH box helicase QMA0440_03355 PF02253 Phospholipase A1 QMA0440_03356 PF03061 Thioesterase superfamily QMA0440_03357 PF00892 EamA-like transporter family QMA0440_03358 PF01544 CorA-like Mg2+ transporter protein QMA0440_03360 PF09370 Phosphoenolpyruvate hydrolase-like QMA0440_03363 PF13361 UvrD-like helicase C-terminal domain QMA0440_03363 PF00580 UvrD/REP helicase N-terminal domain QMA0440_03364 PF13419 Haloacid dehalogenase-like hydrolase QMA0440_03365 PF00589 Phage integrase family QMA0440_03365 PF02899 Phage integrase, N-terminal SAM-like domain QMA0440_03366 PF04340 Protein of unknown function, DUF484 QMA0440_03367 PF01678 Diaminopimelate epimerase QMA0440_03368 PF13627 Prokaryotic lipoprotein-attachment site QMA0440_03369 PF01491 Frataxin-like domain QMA0440_03370 PF01295 Adenylate cyclase, class-I QMA0440_03370 PF12633 Adenylate cyclase NT domain QMA0440_03371 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain QMA0440_03371 PF03900 Porphobilinogen deaminase, C-terminal domain QMA0440_03372 PF02602 Uroporphyrinogen-III synthase HemD QMA0440_03373 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase QMA0440_03374 PF07219 HemY protein N-terminus QMA0440_03374 PF07719 Tetratricopeptide repeat QMA0440_03381 PF00324 Amino acid permease QMA0440_03382 PF03808 Glycosyl transferase WecB/TagA/CpsF family QMA0440_03383 PF06899 WzyE protein, O-antigen assembly polymerase QMA0440_03384 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 QMA0440_03385 PF01943 Polysaccharide biosynthesis protein QMA0440_03386 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family QMA0440_03388 PF00483 Nucleotidyl transferase QMA0440_03389 PF16363 GDP-mannose 4,6 dehydratase QMA0440_03390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain QMA0440_03390 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain QMA0440_03390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain QMA0440_03391 PF02350 UDP-N-acetylglucosamine 2-epimerase QMA0440_03392 PF02706 Chain length determinant protein QMA0440_03393 PF00953 Glycosyl transferase family 4 QMA0440_03394 PF07497 Rho termination factor, RNA-binding domain QMA0440_03394 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain QMA0440_03394 PF07498 Rho termination factor, N-terminal domain QMA0440_03395 PF00085 Thioredoxin QMA0440_03396 PF00271 Helicase conserved C-terminal domain QMA0440_03396 PF00270 DEAD/DEAH box helicase QMA0440_03397 PF02541 Ppx/GppA phosphatase family QMA0440_03398 PF13361 UvrD-like helicase C-terminal domain QMA0440_03398 PF00580 UvrD/REP helicase N-terminal domain QMA0440_03400 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain QMA0440_03400 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain QMA0440_03401 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_03401 PF03466 LysR substrate binding domain QMA0440_03402 PF18416 N-acetylglucosamine binding protein domain 2 QMA0440_03402 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading QMA0440_03403 PF00291 Pyridoxal-phosphate dependent enzyme QMA0440_03403 PF00585 C-terminal regulatory domain of Threonine dehydratase QMA0440_03404 PF00920 Dehydratase family QMA0440_03405 PF01063 Amino-transferase class IV QMA0440_03407 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain QMA0440_03407 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain QMA0440_03407 PF00205 Thiamine pyrophosphate enzyme, central domain QMA0440_03408 PF01078 Magnesium chelatase, subunit ChlI QMA0440_03408 PF13335 Magnesium chelatase, subunit ChlI C-terminal QMA0440_03409 PF04219 Protein of unknown function, DUF QMA0440_03410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_03410 PF03466 LysR substrate binding domain QMA0440_03419 PF01177 Asp/Glu/Hydantoin racemase QMA0440_03420 PF00593 TonB dependent receptor QMA0440_03420 PF07715 TonB-dependent Receptor Plug Domain QMA0440_03421 PF05958 tRNA (Uracil-5-)-methyltransferase QMA0440_03422 PF07226 Protein of unknown function (DUF1422) QMA0440_03423 PF00440 Bacterial regulatory proteins, tetR family QMA0440_03424 PF07992 Pyridine nucleotide-disulphide oxidoreductase QMA0440_03424 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain QMA0440_03425 PF03466 LysR substrate binding domain QMA0440_03425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_03426 PF00462 Glutaredoxin QMA0440_03426 PF08534 Redoxin QMA0440_03427 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain QMA0440_03427 PF07992 Pyridine nucleotide-disulphide oxidoreductase QMA0440_03431 PF00529 HlyD membrane-fusion protein of T1SS QMA0440_03432 PF00005 ABC transporter QMA0440_03432 PF00664 ABC transporter transmembrane region QMA0440_03434 PF07715 TonB-dependent Receptor Plug Domain QMA0440_03434 PF00593 TonB dependent receptor QMA0440_03435 PF14698 Argininosuccinate lyase C-terminal QMA0440_03435 PF00206 Lyase QMA0440_03436 PF00764 Arginosuccinate synthase QMA0440_03437 PF00696 Amino acid kinase family QMA0440_03438 PF02774 Semialdehyde dehydrogenase, dimerisation domain QMA0440_03438 PF01118 Semialdehyde dehydrogenase, NAD binding domain QMA0440_03439 PF07687 Peptidase dimerisation domain QMA0440_03439 PF01546 Peptidase family M20/M25/M40 QMA0440_03440 PF00311 Phosphoenolpyruvate carboxylase QMA0440_03442 PF02219 Methylenetetrahydrofolate reductase QMA0440_03445 PF03447 Homoserine dehydrogenase, NAD binding domain QMA0440_03445 PF00696 Amino acid kinase family QMA0440_03445 PF00742 Homoserine dehydrogenase QMA0440_03446 PF01053 Cys/Met metabolism PLP-dependent enzyme QMA0440_03447 PF01340 Met Apo-repressor, MetJ QMA0440_03448 PF01197 Ribosomal protein L31 QMA0440_03449 PF18319 PriA DNA helicase Cys-rich region (CRR) domain QMA0440_03449 PF00270 DEAD/DEAH box helicase QMA0440_03449 PF00271 Helicase conserved C-terminal domain QMA0440_03449 PF18074 Primosomal protein N C-terminal domain QMA0440_03449 PF17764 3′ DNA-binding domain (3′BD) QMA0440_03450 PF00356 Bacterial regulatory proteins, lacI family QMA0440_03451 PF05036 Sporulation related domain QMA0440_03452 PF00227 Proteasome subunit QMA0440_03453 PF10431 C-terminal, D2-small domain, of ClpB protein QMA0440_03453 PF07724 AAA domain (Cdc48 subfamily) QMA0440_03453 PF00004 ATPase family associated with various cellular activities (AAA) QMA0440_03454 PF01040 UbiA prenyltransferase family QMA0440_03455 PF03737 Aldolase/RraA QMA0440_03456 PF06005 Cell division protein ZapB QMA0440_03457 PF00230 Major intrinsic protein QMA0440_03458 PF02782 FGGY family of carbohydrate kinases, C-terminal domain QMA0440_03458 PF00370 FGGY family of carbohydrate kinases, N-terminal domain QMA0440_03459 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded QMA0440_03460 PF07690 Major Facilitator Superfamily QMA0440_03461 PF00970 Oxidoreductase FAD-binding domain QMA0440_03461 PF00175 Oxidoreductase NAD-binding domain QMA0440_03462 PF05656 Protein of unknown function (DUF805) QMA0440_03463 PF07305 Protein of unknown function (DUF1454) QMA0440_03464 PF00121 Triosephosphate isomerase QMA0440_03466 PF00365 Phosphofructokinase QMA0440_03467 PF01545 Cation efflux family QMA0440_03467 PF16916 Dimerisation domain of Zinc Transporter QMA0440_03468 PF07813 LTXXQ motif family protein QMA0440_03469 PF00486 Transcriptional regulatory protein, C terminal QMA0440_03469 PF00072 Response regulator receiver domain QMA0440_03470 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_03470 PF00672 HAMP domain QMA0440_03470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_03470 PF16527 Two-component sensor protein CpxA, periplasmic domain QMA0440_03471 PF00588 SpoU rRNA Methylase family QMA0440_03472 PF00132 Bacterial transferase hexapeptide (six repeats) QMA0440_03472 PF06426 Serine acetyltransferase, N-terminal QMA0440_03473 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus QMA0440_03473 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus QMA0440_03474 PF02556 Preprotein translocase subunit SecB QMA0440_03475 PF00462 Glutaredoxin QMA0440_03476 PF00581 Rhodanese-like domain QMA0440_03477 PF06415 BPG-independent PGAM N-terminus (iPGM_N) QMA0440_03477 PF01676 Metalloenzyme superfamily QMA0440_03478 PF01551 Peptidase family M23 QMA0440_03479 PF04748 Divergent polysaccharide deacetylase QMA0440_03480 PF08240 Alcohol dehydrogenase GroES-like domain QMA0440_03480 PF00107 Zinc-binding dehydrogenase QMA0440_03481 PF00155 Aminotransferase class I and II QMA0440_03482 PF01370 NAD dependent epimerase/dehydratase family QMA0440_03483 PF01075 Glycosyltransferase family 9 (heptosyltransferase) QMA0440_03484 PF01075 Glycosyltransferase family 9 (heptosyltransferase) QMA0440_03485 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) QMA0440_03486 PF00535 Glycosyl transferase family 2 QMA0440_03487 PF01467 Cytidylyltransferase-like QMA0440_03488 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain QMA0440_03488 PF06827 Zinc finger found in FPG and IleRS QMA0440_03488 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain QMA0440_03489 PF00471 Ribosomal protein L33 QMA0440_03490 PF00830 Ribosomal L28 family QMA0440_03491 PF04002 RadC-like JAB domain QMA0440_03492 PF02441 Flavoprotein QMA0440_03492 PF04127 DNA / pantothenate metabolism flavoprotein QMA0440_03493 PF00692 dUTPase QMA0440_03494 PF00440 Bacterial regulatory proteins, tetR family QMA0440_03495 PF00156 Phosphoribosyl transferase domain QMA0440_03496 PF03725 3' exoribonuclease family, domain 2 QMA0440_03496 PF01138 3' exoribonuclease family, domain 1 QMA0440_03497 PF03755 YicC-like family, N-terminal region QMA0440_03497 PF08340 Domain of unknown function (DUF1732) QMA0440_03499 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family QMA0440_03499 PF03466 LysR substrate binding domain QMA0440_03500 PF00990 Diguanylate cyclase, GGDEF domain QMA0440_03500 PF13426 PAS domain QMA0440_03500 PF00563 EAL domain QMA0440_03501 PF00378 Enoyl-CoA hydratase/isomerase QMA0440_03502 PF01773 Na+ dependent nucleoside transporter N-terminus QMA0440_03502 PF07662 Na+ dependent nucleoside transporter C-terminus QMA0440_03502 PF07670 Nucleoside recognition QMA0440_03505 PF03458 UPF0126 domain QMA0440_03506 PF03120 NAD-dependent DNA ligase OB-fold domain QMA0440_03506 PF01653 NAD-dependent DNA ligase adenylation domain QMA0440_03507 PF00625 Guanylate kinase QMA0440_03508 PF01192 RNA polymerase Rpb6 QMA0440_03509 PF04607 Region found in RelA / SpoT proteins QMA0440_03509 PF02824 TGS domain QMA0440_03509 PF13291 ACT domain QMA0440_03510 PF00588 SpoU rRNA Methylase family QMA0440_03510 PF12105 SpoU, rRNA methylase, C-terminal QMA0440_03511 PF17191 RecG wedge domain QMA0440_03511 PF00271 Helicase conserved C-terminal domain QMA0440_03511 PF00270 DEAD/DEAH box helicase QMA0440_03512 PF03616 Sodium/glutamate symporter QMA0440_03513 PF00860 Permease family QMA0440_03514 PF05170 AsmA family QMA0440_03515 PF00583 Acetyltransferase (GNAT) family QMA0440_03515 PF09500 Putative thioesterase (yiiD_Cterm) QMA0440_03516 PF02580 D-Tyr-tRNA(Tyr) deacylase QMA0440_03517 PF03631 Virulence factor BrkB QMA0440_03518 PF13419 Haloacid dehalogenase-like hydrolase QMA0440_03520 PF00120 Glutamine synthetase, catalytic domain QMA0440_03520 PF03951 Glutamine synthetase, beta-Grasp domain QMA0440_03521 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase QMA0440_03521 PF00512 His Kinase A (phospho-acceptor) domain QMA0440_03521 PF00989 PAS fold QMA0440_03522 PF02954 Bacterial regulatory protein, Fis family QMA0440_03522 PF00072 Response regulator receiver domain QMA0440_03522 PF00158 Sigma-54 interaction domain QMA0440_03523 PF06969 HemN C-terminal domain QMA0440_03523 PF04055 Radical SAM superfamily QMA0440_03524 PF04220 Der GTPase activator (YihI) QMA0440_03525 PF01926 50S ribosome-binding GTPase QMA0440_03526 PF00476 DNA polymerase family A QMA0440_03526 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain QMA0440_03526 PF01367 5'-3' exonuclease, C-terminal SAM fold QMA0440_03526 PF01612 3'-5' exonuclease QMA0440_03527 PF01323 DSBA-like thioredoxin domain QMA0440_03528 PF01636 Phosphotransferase enzyme family QMA0440_03529 PF06288 Protein of unknown function (DUF1040) QMA0440_03530 PF12804 MobA-like NTP transferase domain QMA0440_03531 PF03205 Molybdopterin guanine dinucleotide synthesis protein B QMA0440_03536 PF00392 Bacterial regulatory proteins, gntR family QMA0440_03536 PF07729 FCD domain QMA0440_03537 PF00356 Bacterial regulatory proteins, lacI family QMA0440_03538 PF00294 pfkB family carbohydrate kinase QMA0440_03539 PF13407 Periplasmic binding protein domain QMA0440_03540 PF02653 Branched-chain amino acid transport system / permease component QMA0440_03541 PF00005 ABC transporter QMA0440_03542 PF05025 RbsD / FucU transport protein family QMA0440_03543 PF02705 K+ potassium transporter QMA0440_03544 PF07728 AAA domain (dynein-related subfamily) QMA0440_03544 PF17868 AAA lid domain QMA0440_03544 PF12592 Protein of unknown function (DUF3763) QMA0440_03545 PF05762 VWA domain containing CoxE-like protein QMA0440_03546 PF03590 Aspartate-ammonia ligase QMA0440_03547 PF01037 Lrp/AsnC ligand binding domain QMA0440_03548 PF00258 Flavodoxin QMA0440_03549 PF13932 GidA associated domain QMA0440_03549 PF01134 Glucose inhibited division protein A QMA0440_03550 PF02527 rRNA small subunit methyltransferase G QMA0440_03551 PF03899 ATP synthase I chain QMA0440_03552 PF00119 ATP synthase A chain QMA0440_03553 PF00137 ATP synthase subunit C QMA0440_03554 PF00430 ATP synthase B/B' CF(0) QMA0440_03555 PF00213 ATP synthase delta (OSCP) subunit QMA0440_03556 PF02874 ATP synthase alpha/beta family, beta-barrel domain QMA0440_03556 PF00306 ATP synthase alpha/beta chain, C terminal domain QMA0440_03556 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain QMA0440_03557 PF00231 ATP synthase QMA0440_03558 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain QMA0440_03558 PF02874 ATP synthase alpha/beta family, beta-barrel domain QMA0440_03559 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain QMA0440_03559 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain QMA0440_03560 PF00132 Bacterial transferase hexapeptide (six repeats) QMA0440_03560 PF12804 MobA-like NTP transferase domain QMA0440_03561 PF01380 SIS domain QMA0440_03562 PF12849 PBP superfamily domain QMA0440_03563 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_03564 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_03565 PF00005 ABC transporter QMA0440_03566 PF01895 PhoU domain QMA0440_03567 PF00497 Bacterial extracellular solute-binding proteins, family 3 QMA0440_03568 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_03569 PF00528 Binding-protein-dependent transport system inner membrane component QMA0440_03570 PF00860 Permease family QMA0440_03571 PF00672 HAMP domain QMA0440_03571 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain QMA0440_03571 PF02203 Tar ligand binding domain homologue QMA0440_03573 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain QMA0440_03573 PF02753 Pili assembly chaperone PapD, C-terminal domain QMA0440_03574 PF00577 Outer membrane usher protein QMA0440_03574 PF13954 PapC N-terminal domain QMA0440_03574 PF13953 PapC C-terminal domain QMA0440_03576 PF12631 MnmE helical domain QMA0440_03576 PF10396 GTP-binding protein TrmE N-terminus QMA0440_03576 PF01926 50S ribosome-binding GTPase QMA0440_03577 PF02096 60Kd inner membrane protein QMA0440_03577 PF14849 YidC periplasmic domain QMA0440_03578 PF01809 Putative membrane protein insertion efficiency factor QMA0440_03579 PF00825 Ribonuclease P QMA0440_03580 PF00468 Ribosomal protein L34