QMA0440_00001 SM00382 ATPases associated with a variety of cellular activities QMA0440_00001 SM00760 Bacterial dnaA protein helix-turn-helix domain QMA0440_00002 SM00480 DNA polymerase III beta subunit QMA0440_00004 SM00387 Histidine kinase-like ATPases QMA0440_00004 SM00433 TopoisomeraseII QMA0440_00024 SM00972 Spore Coat Protein U domain QMA0440_00031 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QMA0440_00031 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_00031 SM01358 QMA0440_00031 QMA0440_00035 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QMA0440_00058 SM00421 helix_turn_helix, Lux Regulon QMA0440_00058 SM00448 cheY-homologous receiver domain QMA0440_00059 SM00387 Histidine kinase-like ATPases QMA0440_00065 SM00382 ATPases associated with a variety of cellular activities QMA0440_00066 SM00382 ATPases associated with a variety of cellular activities QMA0440_00075 SM00028 Tetratricopeptide repeats QMA0440_00076 SM00052 Putative diguanylate phosphodiesterase QMA0440_00076 SM00267 diguanylate cyclase QMA0440_00081 SM00052 Putative diguanylate phosphodiesterase QMA0440_00091 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase QMA0440_00100 SM00354 helix_turn _helix lactose operon repressor QMA0440_00104 SM00859 Semialdehyde dehydrogenase, NAD binding domain QMA0440_00106 SM00642 Alpha-amylase domain QMA0440_00107 SM00642 Alpha-amylase domain QMA0440_00112 SM00420 helix_turn_helix, Deoxyribose operon repressor QMA0440_00112 SM01134 QMA0440_00112 QMA0440_00114 SM00450 Rhodanese Homology Domain QMA0440_00115 SM00421 helix_turn_helix, Lux Regulon QMA0440_00124 SM00899 QMA0440_00124 QMA0440_00125 SM00316 Ribosomal protein S1-like RNA-binding domain QMA0440_00125 SM00732 Likely ribonuclease with RNase H fold. QMA0440_00131 SM00448 cheY-homologous receiver domain QMA0440_00131 SM00862 Transcriptional regulatory protein, C terminal QMA0440_00132 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_00132 SM00387 Histidine kinase-like ATPases QMA0440_00132 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_00135 SM00363 S4 RNA-binding domain QMA0440_00144 SM00965 Secretin and TonB N terminus short domain QMA0440_00161 SM00354 helix_turn _helix lactose operon repressor QMA0440_00167 SM00100 Cyclic nucleotide-monophosphate binding domain QMA0440_00167 SM00419 helix_turn_helix, cAMP Regulatory protein QMA0440_00180 SM00382 ATPases associated with a variety of cellular activities QMA0440_00193 SM00838 Elongation factor G C-terminus QMA0440_00193 SM00889 Elongation factor G, domain IV QMA0440_00197 SM01403 QMA0440_00197 QMA0440_00201 SM01382 QMA0440_00201 QMA0440_00201 SM01383 QMA0440_00201 QMA0440_00204 SM00322 K homology RNA-binding domain QMA0440_00208 SM01374 QMA0440_00208 QMA0440_00209 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. QMA0440_00222 SM00363 S4 RNA-binding domain QMA0440_00222 SM01390 QMA0440_00222 QMA0440_00223 SM00662 RNA polymerases D QMA0440_00225 SM00422 helix_turn_helix, mercury resistance QMA0440_00253 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. QMA0440_00253 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. QMA0440_00254 SM00649 Ribosomal protein L11/L12 QMA0440_00259 SM00663 RNA polymerase I subunit A N-terminus QMA0440_00260 SM00876 Biotin and Thiamin Synthesis associated domain QMA0440_00271 SM00411 bacterial (prokaryotic) histone like domain QMA0440_00273 SM01209 QMA0440_00273 QMA0440_00273 SM01210 QMA0440_00273 QMA0440_00274 SM00798 AICARFT/IMPCHase bienzyme QMA0440_00274 SM00851 MGS-like domain QMA0440_00286 SM00346 helix_turn_helix isocitrate lyase regulation QMA0440_00287 SM01018 B12 binding domain QMA0440_00305 SM00382 ATPases associated with a variety of cellular activities QMA0440_00309 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins QMA0440_00309 SM00634 Bacterial Ig-like domain (group 1) QMA0440_00311 SM00912 haemagglutination activity domain QMA0440_00322 SM00382 ATPases associated with a variety of cellular activities QMA0440_00327 SM00563 Phosphate acyltransferases QMA0440_00333 SM00829 Enoylreductase QMA0440_00334 SM00382 ATPases associated with a variety of cellular activities QMA0440_00335 SM01005 Alanine racemase, C-terminal domain QMA0440_00346 SM00947 Carbonic anhydrase QMA0440_00355 SM00878 Biotin carboxylase C-terminal domain QMA0440_00360 SM00829 Enoylreductase QMA0440_00361 SM00052 Putative diguanylate phosphodiesterase QMA0440_00361 SM00267 diguanylate cyclase QMA0440_00366 SM00316 Ribosomal protein S1-like RNA-binding domain QMA0440_00383 SM00831 Cation transporter/ATPase, N-terminus QMA0440_00384 SM00354 helix_turn _helix lactose operon repressor QMA0440_00386 SM00642 Alpha-amylase domain QMA0440_00396 SM00382 ATPases associated with a variety of cellular activities QMA0440_00402 SM00382 ATPases associated with a variety of cellular activities QMA0440_00409 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QMA0440_00410 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QMA0440_00420 SM00729 Elongator protein 3, MiaB family, Radical SAM QMA0440_00421 SM00073 Histidine Phosphotransfer domain QMA0440_00421 SM00091 PAS domain QMA0440_00421 SM00387 Histidine kinase-like ATPases QMA0440_00421 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_00421 SM00448 cheY-homologous receiver domain QMA0440_00424 SM00749 bacterial OsmY and nodulation domain QMA0440_00440 SM00345 helix_turn_helix gluconate operon transcriptional repressor QMA0440_00440 SM00895 QMA0440_00440 QMA0440_00444 SM00858 QMA0440_00444 QMA0440_00450 SM00869 Autotransporter beta-domain QMA0440_00454 SM00912 haemagglutination activity domain QMA0440_00475 SM00400 zinc finger QMA0440_00475 SM00493 QMA0440_00475 QMA0440_00475 SM00766 DNA primase DnaG DnaB-binding QMA0440_00478 SM01207 QMA0440_00478 QMA0440_00479 SM00905 Dihydroneopterin aldolase QMA0440_00481 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QMA0440_00482 SM00287 Bacterial SH3 domain homologues QMA0440_00483 SM01118 QMA0440_00483 QMA0440_00496 SM00387 Histidine kinase-like ATPases QMA0440_00496 SM00433 TopoisomeraseII QMA0440_00499 SM00434 DNA Topoisomerase IV QMA0440_00500 SM00563 Phosphate acyltransferases QMA0440_00502 SM00729 Elongator protein 3, MiaB family, Radical SAM QMA0440_00506 SM00342 helix_turn_helix, arabinose operon control protein QMA0440_00529 SM00923 MbtH-like protein QMA0440_00530 SM00823 Phosphopantetheine attachment site QMA0440_00530 SM00824 Thioesterase QMA0440_00532 SM00382 ATPases associated with a variety of cellular activities QMA0440_00556 SM00478 endonuclease III QMA0440_00556 SM00525 QMA0440_00556 QMA0440_00561 SM00729 Elongator protein 3, MiaB family, Radical SAM QMA0440_00563 SM01152 QMA0440_00563 QMA0440_00570 SM00732 Likely ribonuclease with RNase H fold. QMA0440_00575 SM00731 SprT homologues. QMA0440_00576 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QMA0440_00583 SM00861 Transketolase, pyrimidine binding domain QMA0440_00584 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QMA0440_00596 SM01011 Aminopeptidase P, N-terminal domain QMA0440_00612 SM00937 QMA0440_00612 QMA0440_00616 SM00382 ATPases associated with a variety of cellular activities QMA0440_00623 SM00382 ATPases associated with a variety of cellular activities QMA0440_00632 SM00862 Transcriptional regulatory protein, C terminal QMA0440_00635 SM00849 Metallo-beta-lactamase superfamily QMA0440_00639 SM00354 helix_turn _helix lactose operon repressor QMA0440_00640 SM00563 Phosphate acyltransferases QMA0440_00644 SM00927 DNA mismatch repair enzyme MutH QMA0440_00646 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QMA0440_00657 SM00646 QMA0440_00657 QMA0440_00661 SM00925 MltA specific insert domain QMA0440_00668 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs QMA0440_00668 SM00475 5'-3' exonuclease QMA0440_00677 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QMA0440_00686 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QMA0440_00688 SM00935 Outer membrane protein (OmpH-like) QMA0440_00694 SM00481 DNA polymerase alpha chain like domain QMA0440_00700 SM00977 TilS substrate C-terminal domain QMA0440_00704 SM01322 QMA0440_00704 QMA0440_00712 SM00382 ATPases associated with a variety of cellular activities QMA0440_00712 SM00930 QMA0440_00712 QMA0440_00719 SM00155 Phospholipase D. Active site motifs. QMA0440_00720 SM00881 CoA binding domain QMA0440_00721 SM01144 QMA0440_00721 QMA0440_00723 SM00967 RNA 2'-O ribose methyltransferase substrate binding QMA0440_00726 SM00347 helix_turn_helix multiple antibiotic resistance protein QMA0440_00732 SM00382 ATPases associated with a variety of cellular activities QMA0440_00741 SM00357 Cold shock protein domain QMA0440_00749 SM00382 ATPases associated with a variety of cellular activities QMA0440_00781 SM00986 Uracil DNA glycosylase superfamily QMA0440_00781 SM00987 UreE urease accessory protein, C-terminal domain QMA0440_00784 SM00248 ankyrin repeats QMA0440_00785 SM00487 DEAD-like helicases superfamily QMA0440_00785 SM00490 helicase superfamily c-terminal domain QMA0440_00794 SM00358 Double-stranded RNA binding motif QMA0440_00794 SM00535 Ribonuclease III family QMA0440_00805 SM00062 Bacterial periplasmic substrate-binding proteins QMA0440_00806 SM01211 QMA0440_00806 QMA0440_00808 SM00387 Histidine kinase-like ATPases QMA0440_00808 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_00810 SM00382 ATPases associated with a variety of cellular activities QMA0440_00810 SM00448 cheY-homologous receiver domain QMA0440_00812 SM00938 Nitrogen regulatory protein P-II QMA0440_00831 SM00271 DnaJ molecular chaperone homology domain QMA0440_00837 SM01359 QMA0440_00837 QMA0440_00837 SM01360 QMA0440_00837 QMA0440_00840 SM00562 QMA0440_00840 QMA0440_00842 SM00028 Tetratricopeptide repeats QMA0440_00843 SM00530 Helix-turn-helix XRE-family like proteins QMA0440_00847 SM00564 beta-propeller repeat QMA0440_00851 SM00116 Domain in cystathionine beta-synthase and other proteins. QMA0440_00851 SM01240 QMA0440_00851 QMA0440_00853 SM00247 Beta/gamma crystallins QMA0440_00857 SM00046 Diacylglycerol kinase catalytic domain (presumed) QMA0440_00860 SM00448 cheY-homologous receiver domain QMA0440_00860 SM00862 Transcriptional regulatory protein, C terminal QMA0440_00861 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_00861 SM00387 Histidine kinase-like ATPases QMA0440_00861 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_00873 SM00924 MgtE intracellular N domain QMA0440_00879 SM00382 ATPases associated with a variety of cellular activities QMA0440_00891 SM01130 QMA0440_00891 QMA0440_00901 SM00830 Chorismate mutase type II QMA0440_00905 SM00421 helix_turn_helix, Lux Regulon QMA0440_00905 SM00448 cheY-homologous receiver domain QMA0440_00908 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QMA0440_00912 SM00919 Malic enzyme, NAD binding domain QMA0440_00912 SM01274 QMA0440_00912 QMA0440_00918 SM00382 ATPases associated with a variety of cellular activities QMA0440_00930 SM01130 QMA0440_00930 QMA0440_00939 SM00382 ATPases associated with a variety of cellular activities QMA0440_00946 SM00771 ZipA, C-terminal domain (FtsZ-binding) QMA0440_00947 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QMA0440_00947 SM00292 breast cancer carboxy-terminal domain QMA0440_00947 SM00532 Ligase N family QMA0440_00965 SM00448 cheY-homologous receiver domain QMA0440_00965 SM00850 LytTr DNA-binding domain QMA0440_00966 SM00387 Histidine kinase-like ATPases QMA0440_00976 SM00382 ATPases associated with a variety of cellular activities QMA0440_00991 SM00463 Small MutS-related domain QMA0440_00999 SM00825 Beta-ketoacyl synthase QMA0440_01006 SM00345 helix_turn_helix gluconate operon transcriptional repressor QMA0440_01009 SM00342 helix_turn_helix, arabinose operon control protein QMA0440_01011 SM00859 Semialdehyde dehydrogenase, NAD binding domain QMA0440_01020 SM00062 Bacterial periplasmic substrate-binding proteins QMA0440_01023 SM00382 ATPases associated with a variety of cellular activities QMA0440_01026 SM00052 Putative diguanylate phosphodiesterase QMA0440_01032 SM00354 helix_turn _helix lactose operon repressor QMA0440_01040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QMA0440_01047 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region QMA0440_01048 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QMA0440_01048 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region QMA0440_01062 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QMA0440_01064 SM01060 QMA0440_01064 QMA0440_01070 SM00852 Probable molybdopterin binding domain QMA0440_01077 SM00434 DNA Topoisomerase IV QMA0440_01078 SM00387 Histidine kinase-like ATPases QMA0440_01078 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_01078 SM00448 cheY-homologous receiver domain QMA0440_01079 SM00421 helix_turn_helix, Lux Regulon QMA0440_01079 SM00448 cheY-homologous receiver domain QMA0440_01080 SM00387 Histidine kinase-like ATPases QMA0440_01080 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_01094 SM00487 DEAD-like helicases superfamily QMA0440_01094 SM00490 helicase superfamily c-terminal domain QMA0440_01095 SM00363 S4 RNA-binding domain QMA0440_01098 SM00382 ATPases associated with a variety of cellular activities QMA0440_01102 SM00052 Putative diguanylate phosphodiesterase QMA0440_01104 SM00014 Acid phosphatase homologues QMA0440_01105 SM00833 Cobalamin synthesis protein cobW C-terminal domain QMA0440_01109 SM00841 Elongation factor P, C-terminal QMA0440_01109 SM01185 QMA0440_01109 QMA0440_01118 SM00518 AP endonuclease family 2 QMA0440_01125 SM00382 ATPases associated with a variety of cellular activities QMA0440_01129 SM00479 QMA0440_01129 QMA0440_01134 SM00100 Cyclic nucleotide-monophosphate binding domain QMA0440_01134 SM00419 helix_turn_helix, cAMP Regulatory protein QMA0440_01135 SM00382 ATPases associated with a variety of cellular activities QMA0440_01139 SM00387 Histidine kinase-like ATPases QMA0440_01140 SM00421 helix_turn_helix, Lux Regulon QMA0440_01140 SM00448 cheY-homologous receiver domain QMA0440_01141 SM00448 cheY-homologous receiver domain QMA0440_01142 SM00091 PAS domain QMA0440_01142 SM00387 Histidine kinase-like ATPases QMA0440_01143 SM00764 Citrate lyase ligase C-terminal domain QMA0440_01165 SM00530 Helix-turn-helix XRE-family like proteins QMA0440_01171 SM00843 QMA0440_01171 QMA0440_01177 SM00990 QMA0440_01177 QMA0440_01196 SM01321 QMA0440_01196 QMA0440_01221 SM00829 Enoylreductase QMA0440_01222 SM01038 Beta galactosidase small chain QMA0440_01223 SM00354 helix_turn _helix lactose operon repressor QMA0440_01224 SM00357 Cold shock protein domain QMA0440_01226 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QMA0440_01226 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_01233 SM00073 Histidine Phosphotransfer domain QMA0440_01233 SM00260 Two component signalling adaptor domain QMA0440_01233 SM00387 Histidine kinase-like ATPases QMA0440_01233 SM01231 QMA0440_01233 QMA0440_01234 SM00260 Two component signalling adaptor domain QMA0440_01235 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QMA0440_01235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_01235 SM00319 Homologues of the ligand binding domain of Tar QMA0440_01236 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QMA0440_01236 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_01236 SM00319 Homologues of the ligand binding domain of Tar QMA0440_01237 SM00138 Methyltransferase, chemotaxis proteins QMA0440_01238 SM00448 cheY-homologous receiver domain QMA0440_01239 SM00448 cheY-homologous receiver domain QMA0440_01242 SM00862 Transcriptional regulatory protein, C terminal QMA0440_01243 SM00862 Transcriptional regulatory protein, C terminal QMA0440_01253 SM00421 helix_turn_helix, Lux Regulon QMA0440_01261 SM00858 QMA0440_01261 QMA0440_01270 SM00047 Lysozyme subfamily 2 QMA0440_01282 SM00382 ATPases associated with a variety of cellular activities QMA0440_01288 SM00477 DNA/RNA non-specific endonuclease QMA0440_01288 SM00892 DNA/RNA non-specific endonuclease QMA0440_01290 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QMA0440_01291 SM00342 helix_turn_helix, arabinose operon control protein QMA0440_01300 SM00062 Bacterial periplasmic substrate-binding proteins QMA0440_01300 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QMA0440_01302 SM00382 ATPases associated with a variety of cellular activities QMA0440_01305 SM00862 Transcriptional regulatory protein, C terminal QMA0440_01312 SM00421 helix_turn_helix, Lux Regulon QMA0440_01312 SM00448 cheY-homologous receiver domain QMA0440_01313 SM00465 GIY-YIG type nucleases (URI domain) QMA0440_01319 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QMA0440_01319 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_01321 SM00382 ATPases associated with a variety of cellular activities QMA0440_01343 SM00363 S4 RNA-binding domain QMA0440_01348 SM00342 helix_turn_helix, arabinose operon control protein QMA0440_01352 SM00357 Cold shock protein domain QMA0440_01353 SM00357 Cold shock protein domain QMA0440_01361 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QMA0440_01361 SM00091 PAS domain QMA0440_01361 SM00267 diguanylate cyclase QMA0440_01362 SM00090 RIO-like kinase QMA0440_01363 SM00382 ATPases associated with a variety of cellular activities QMA0440_01366 SM00342 helix_turn_helix, arabinose operon control protein QMA0440_01377 SM00357 Cold shock protein domain QMA0440_01383 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QMA0440_01383 SM00450 Rhodanese Homology Domain QMA0440_01397 SM01091 Transporter associated domain QMA0440_01403 SM00487 DEAD-like helicases superfamily QMA0440_01403 SM00490 helicase superfamily c-terminal domain QMA0440_01405 SM01022 QMA0440_01405 QMA0440_01409 SM00479 QMA0440_01409 QMA0440_01436 SM00530 Helix-turn-helix XRE-family like proteins QMA0440_01443 SM00843 QMA0440_01443 QMA0440_01449 SM00990 QMA0440_01449 QMA0440_01501 SM01022 QMA0440_01501 QMA0440_01503 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QMA0440_01503 SM00091 PAS domain QMA0440_01503 SM00267 diguanylate cyclase QMA0440_01506 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QMA0440_01507 SM00945 ProQ/FINO family QMA0440_01508 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QMA0440_01508 SM00245 tail specific protease QMA0440_01511 SM00346 helix_turn_helix isocitrate lyase regulation QMA0440_01512 SM00644 QMA0440_01512 QMA0440_01520 SM00382 ATPases associated with a variety of cellular activities QMA0440_01531 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain QMA0440_01536 SM00873 B3/4 domain QMA0440_01536 SM00874 tRNA synthetase B5 domain QMA0440_01536 SM00896 Ferredoxin-fold anticodon binding domain QMA0440_01537 SM00411 bacterial (prokaryotic) histone like domain QMA0440_01548 SM00382 ATPases associated with a variety of cellular activities QMA0440_01559 SM00382 ATPases associated with a variety of cellular activities QMA0440_01573 SM00382 ATPases associated with a variety of cellular activities QMA0440_01588 SM00354 helix_turn _helix lactose operon repressor QMA0440_01593 SM00479 QMA0440_01593 QMA0440_01600 SM00347 helix_turn_helix multiple antibiotic resistance protein QMA0440_01604 SM00363 S4 RNA-binding domain QMA0440_01611 SM00271 DnaJ molecular chaperone homology domain QMA0440_01615 SM00382 ATPases associated with a variety of cellular activities QMA0440_01616 SM00382 ATPases associated with a variety of cellular activities QMA0440_01622 SM00382 ATPases associated with a variety of cellular activities QMA0440_01629 SM00953 QMA0440_01629 QMA0440_01631 SM00091 PAS domain QMA0440_01631 SM00382 ATPases associated with a variety of cellular activities QMA0440_01633 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QMA0440_01638 SM00890 Domain of unknown function QMA0440_01645 SM00871 Bacterial transcription activator, effector binding domain QMA0440_01649 SM00382 ATPases associated with a variety of cellular activities QMA0440_01649 SM00487 DEAD-like helicases superfamily QMA0440_01649 SM00490 helicase superfamily c-terminal domain QMA0440_01649 SM00847 Helicase associated domain (HA2) Add an annotation QMA0440_01650 SM00020 Trypsin-like serine protease QMA0440_01653 SM00342 helix_turn_helix, arabinose operon control protein QMA0440_01656 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_01656 SM00387 Histidine kinase-like ATPases QMA0440_01656 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_01657 SM00448 cheY-homologous receiver domain QMA0440_01657 SM00862 Transcriptional regulatory protein, C terminal QMA0440_01662 SM01002 Alanine dehydrogenase/PNT, C-terminal domain QMA0440_01662 SM01003 Alanine dehydrogenase/PNT, N-terminal domain QMA0440_01665 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family QMA0440_01666 SM01007 Class II Aldolase and Adducin N-terminal domain QMA0440_01669 SM00420 helix_turn_helix, Deoxyribose operon repressor QMA0440_01669 SM01134 QMA0440_01669 QMA0440_01672 SM00100 Cyclic nucleotide-monophosphate binding domain QMA0440_01672 SM00419 helix_turn_helix, cAMP Regulatory protein QMA0440_01674 SM00871 Bacterial transcription activator, effector binding domain QMA0440_01682 SM00849 Metallo-beta-lactamase superfamily QMA0440_01714 SM00342 helix_turn_helix, arabinose operon control protein QMA0440_01716 SM00900 QMA0440_01716 QMA0440_01718 SM00478 endonuclease III QMA0440_01718 SM00525 QMA0440_01718 QMA0440_01719 SM00357 Cold shock protein domain QMA0440_01719 SM00955 QMA0440_01719 QMA0440_01720 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QMA0440_01720 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QMA0440_01720 SM00091 PAS domain QMA0440_01720 SM00267 diguanylate cyclase QMA0440_01724 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family QMA0440_01727 SM00028 Tetratricopeptide repeats QMA0440_01729 SM00014 Acid phosphatase homologues QMA0440_01735 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain QMA0440_01735 SM00437 Bacterial DNA topoisomerase I DNA-binding domain QMA0440_01735 SM00493 QMA0440_01735 QMA0440_01738 SM00822 QMA0440_01738 QMA0440_01740 SM00363 S4 RNA-binding domain QMA0440_01742 SM00481 DNA polymerase alpha chain like domain QMA0440_01749 SM00749 bacterial OsmY and nodulation domain QMA0440_01757 SM00421 helix_turn_helix, Lux Regulon QMA0440_01763 SM00862 Transcriptional regulatory protein, C terminal QMA0440_01770 SM00155 Phospholipase D. Active site motifs. QMA0440_01772 SM00382 ATPases associated with a variety of cellular activities QMA0440_01773 SM00382 ATPases associated with a variety of cellular activities QMA0440_01782 SM00528 Domain in histone-like proteins of HNS family QMA0440_01783 SM00984 UDP binding domain QMA0440_01784 SM00448 cheY-homologous receiver domain QMA0440_01795 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain QMA0440_01795 SM00437 Bacterial DNA topoisomerase I DNA-binding domain QMA0440_01795 SM00493 QMA0440_01795 QMA0440_01799 SM00870 QMA0440_01799 QMA0440_01803 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QMA0440_01807 SM00763 PrkA AAA domain QMA0440_01812 SM00052 Putative diguanylate phosphodiesterase QMA0440_01812 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QMA0440_01812 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QMA0440_01812 SM00091 PAS domain QMA0440_01812 SM00267 diguanylate cyclase QMA0440_01815 SM01005 Alanine racemase, C-terminal domain QMA0440_01818 SM00345 helix_turn_helix gluconate operon transcriptional repressor QMA0440_01829 SM00341 Helicase and RNase D C-terminal QMA0440_01829 SM00474 3'-5' exonuclease QMA0440_01833 SM00491 QMA0440_01833 QMA0440_01842 SM00257 Lysin motif QMA0440_01844 SM00382 ATPases associated with a variety of cellular activities QMA0440_01847 SM00382 ATPases associated with a variety of cellular activities QMA0440_01848 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QMA0440_01860 SM00836 DALR anticodon binding domain QMA0440_01860 SM01016 Arginyl tRNA synthetase N terminal dom QMA0440_01862 SM00912 haemagglutination activity domain QMA0440_01872 SM00481 DNA polymerase alpha chain like domain QMA0440_01878 SM00267 diguanylate cyclase QMA0440_01884 SM00937 QMA0440_01884 QMA0440_01888 SM01400 QMA0440_01888 QMA0440_01894 SM00342 helix_turn_helix, arabinose operon control protein QMA0440_01900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QMA0440_01900 SM00382 ATPases associated with a variety of cellular activities QMA0440_01916 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QMA0440_01923 SM00345 helix_turn_helix gluconate operon transcriptional repressor QMA0440_01923 SM00866 QMA0440_01923 QMA0440_01932 SM00345 helix_turn_helix gluconate operon transcriptional repressor QMA0440_01936 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_01936 SM00387 Histidine kinase-like ATPases QMA0440_01941 SM00342 helix_turn_helix, arabinose operon control protein QMA0440_01947 SM00382 ATPases associated with a variety of cellular activities QMA0440_01949 SM00235 Zinc-dependent metalloprotease QMA0440_01951 SM00387 Histidine kinase-like ATPases QMA0440_01952 SM00448 cheY-homologous receiver domain QMA0440_01955 SM01321 QMA0440_01955 QMA0440_01957 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QMA0440_01962 SM00421 helix_turn_helix, Lux Regulon QMA0440_01973 SM00843 QMA0440_01973 QMA0440_01978 SM00409 Immunoglobulin QMA0440_01992 SM00507 HNH nucleases QMA0440_02001 SM00507 HNH nucleases QMA0440_02002 SM01252 QMA0440_02002 QMA0440_02012 SM00530 Helix-turn-helix XRE-family like proteins QMA0440_02023 SM01329 QMA0440_02023 QMA0440_02030 SM00448 cheY-homologous receiver domain QMA0440_02030 SM00862 Transcriptional regulatory protein, C terminal QMA0440_02031 SM00387 Histidine kinase-like ATPases QMA0440_02031 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_02032 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. QMA0440_02037 SM00382 ATPases associated with a variety of cellular activities QMA0440_02039 SM00487 DEAD-like helicases superfamily QMA0440_02039 SM00490 helicase superfamily c-terminal domain QMA0440_02039 SM00982 QMA0440_02039 QMA0440_02039 SM01058 CarD-like/TRCF domain QMA0440_02055 SM00825 Beta-ketoacyl synthase QMA0440_02057 SM00822 QMA0440_02057 QMA0440_02058 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. QMA0440_02064 SM00363 S4 RNA-binding domain QMA0440_02065 SM00316 Ribosomal protein S1-like RNA-binding domain QMA0440_02072 SM00421 helix_turn_helix, Lux Regulon QMA0440_02074 SM00450 Rhodanese Homology Domain QMA0440_02083 SM01091 Transporter associated domain QMA0440_02084 SM00947 Carbonic anhydrase QMA0440_02088 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase QMA0440_02089 SM00992 Hemimethylated DNA-binding protein YccV like QMA0440_02090 SM00881 CoA binding domain QMA0440_02092 SM00851 MGS-like domain QMA0440_02106 SM00382 ATPases associated with a variety of cellular activities QMA0440_02107 SM00981 QMA0440_02107 QMA0440_02116 SM00849 Metallo-beta-lactamase superfamily QMA0440_02127 SM00357 Cold shock protein domain QMA0440_02128 SM00357 Cold shock protein domain QMA0440_02129 SM01150 QMA0440_02129 QMA0440_02131 SM00382 ATPases associated with a variety of cellular activities QMA0440_02132 SM00849 Metallo-beta-lactamase superfamily QMA0440_02133 SM00411 bacterial (prokaryotic) histone like domain QMA0440_02134 SM00316 Ribosomal protein S1-like RNA-binding domain QMA0440_02138 SM00870 QMA0440_02138 QMA0440_02145 SM00382 ATPases associated with a variety of cellular activities QMA0440_02147 SM00843 QMA0440_02147 QMA0440_02148 SM00344 helix_turn_helix ASNC type QMA0440_02150 SM00382 ATPases associated with a variety of cellular activities QMA0440_02151 SM00382 ATPases associated with a variety of cellular activities QMA0440_02153 SM00316 Ribosomal protein S1-like RNA-binding domain QMA0440_02154 SM00382 ATPases associated with a variety of cellular activities QMA0440_02154 SM01086 C-terminal, D2-small domain, of ClpB protein QMA0440_02156 SM00357 Cold shock protein domain QMA0440_02157 SM00382 ATPases associated with a variety of cellular activities QMA0440_02169 SM00382 ATPases associated with a variety of cellular activities QMA0440_02170 SM00062 Bacterial periplasmic substrate-binding proteins QMA0440_02170 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QMA0440_02173 SM00062 Bacterial periplasmic substrate-binding proteins QMA0440_02173 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QMA0440_02178 SM00382 ATPases associated with a variety of cellular activities QMA0440_02185 SM00014 Acid phosphatase homologues QMA0440_02186 SM01133 QMA0440_02186 QMA0440_02187 SM00420 helix_turn_helix, Deoxyribose operon repressor QMA0440_02187 SM01134 QMA0440_02187 QMA0440_02190 SM00936 Penicillin-binding protein 5, C-terminal domain QMA0440_02191 SM00116 Domain in cystathionine beta-synthase and other proteins. QMA0440_02205 SM01350 QMA0440_02205 QMA0440_02208 SM01091 Transporter associated domain QMA0440_02221 SM01321 QMA0440_02221 QMA0440_02224 SM00919 Malic enzyme, NAD binding domain QMA0440_02224 SM01274 QMA0440_02224 QMA0440_02227 SM00382 ATPases associated with a variety of cellular activities QMA0440_02229 SM00354 helix_turn _helix lactose operon repressor QMA0440_02234 SM00829 Enoylreductase QMA0440_02237 SM00852 Probable molybdopterin binding domain QMA0440_02239 SM00382 ATPases associated with a variety of cellular activities QMA0440_02246 SM00062 Bacterial periplasmic substrate-binding proteins QMA0440_02246 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QMA0440_02248 SM00382 ATPases associated with a variety of cellular activities QMA0440_02251 SM00487 DEAD-like helicases superfamily QMA0440_02251 SM00491 QMA0440_02251 QMA0440_02258 SM00382 ATPases associated with a variety of cellular activities QMA0440_02261 SM00450 Rhodanese Homology Domain QMA0440_02266 SM00382 ATPases associated with a variety of cellular activities QMA0440_02269 SM00507 HNH nucleases QMA0440_02270 SM01118 QMA0440_02270 QMA0440_02273 SM00364 Leucine-rich repeats, bacterial type QMA0440_02273 SM00365 Leucine-rich repeat, SDS22-like subfamily QMA0440_02273 SM00369 Leucine-rich repeats, typical (most populated) subfamily QMA0440_02275 SM00487 DEAD-like helicases superfamily QMA0440_02275 SM00490 helicase superfamily c-terminal domain QMA0440_02278 SM00382 ATPases associated with a variety of cellular activities QMA0440_02285 SM00729 Elongator protein 3, MiaB family, Radical SAM QMA0440_02287 SM00382 ATPases associated with a variety of cellular activities QMA0440_02292 SM00487 DEAD-like helicases superfamily QMA0440_02292 SM00490 helicase superfamily c-terminal domain QMA0440_02293 SM00382 ATPases associated with a variety of cellular activities QMA0440_02297 SM00729 Elongator protein 3, MiaB family, Radical SAM QMA0440_02297 SM00876 Biotin and Thiamin Synthesis associated domain QMA0440_02301 SM00382 ATPases associated with a variety of cellular activities QMA0440_02312 SM00855 Phosphoglycerate mutase family QMA0440_02314 SM00421 helix_turn_helix, Lux Regulon QMA0440_02314 SM00448 cheY-homologous receiver domain QMA0440_02315 SM00062 Bacterial periplasmic substrate-binding proteins QMA0440_02315 SM00387 Histidine kinase-like ATPases QMA0440_02315 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_02315 SM00448 cheY-homologous receiver domain QMA0440_02334 SM00881 CoA binding domain QMA0440_02337 SM00861 Transketolase, pyrimidine binding domain QMA0440_02348 SM00797 Allophanate hydrolase subunit 2 QMA0440_02349 SM00796 Allophanate hydrolase subunit 1 QMA0440_02358 SM00387 Histidine kinase-like ATPases QMA0440_02358 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_02359 SM00448 cheY-homologous receiver domain QMA0440_02359 SM00862 Transcriptional regulatory protein, C terminal QMA0440_02365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QMA0440_02368 SM01321 QMA0440_02368 QMA0440_02370 SM01081 Putative carbohydrate binding domain QMA0440_02388 SM00729 Elongator protein 3, MiaB family, Radical SAM QMA0440_02392 SM00116 Domain in cystathionine beta-synthase and other proteins. QMA0440_02392 SM01091 Transporter associated domain QMA0440_02395 SM00062 Bacterial periplasmic substrate-binding proteins QMA0440_02398 SM00382 ATPases associated with a variety of cellular activities QMA0440_02457 SM00530 Helix-turn-helix XRE-family like proteins QMA0440_02525 SM00530 Helix-turn-helix XRE-family like proteins QMA0440_02526 SM00530 Helix-turn-helix XRE-family like proteins QMA0440_02553 SM00936 Penicillin-binding protein 5, C-terminal domain QMA0440_02556 SM00729 Elongator protein 3, MiaB family, Radical SAM QMA0440_02558 SM00267 diguanylate cyclase QMA0440_02562 SM00357 Cold shock protein domain QMA0440_02564 SM00421 helix_turn_helix, Lux Regulon QMA0440_02570 SM00267 diguanylate cyclase QMA0440_02570 SM00448 cheY-homologous receiver domain QMA0440_02571 SM00073 Histidine Phosphotransfer domain QMA0440_02571 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QMA0440_02571 SM00091 PAS domain QMA0440_02571 SM00387 Histidine kinase-like ATPases QMA0440_02571 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_02571 SM00448 cheY-homologous receiver domain QMA0440_02571 SM01079 QMA0440_02571 QMA0440_02580 SM00331 Sigma factor PP2C-like phosphatases QMA0440_02580 SM00448 cheY-homologous receiver domain QMA0440_02588 SM01236 QMA0440_02588 QMA0440_02593 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QMA0440_02607 SM00862 Transcriptional regulatory protein, C terminal QMA0440_02608 SM00840 QMA0440_02608 QMA0440_02611 SM01001 AIR carboxylase QMA0440_02614 SM00382 ATPases associated with a variety of cellular activities QMA0440_02616 SM00822 QMA0440_02616 QMA0440_02618 SM00244 prohibitin homologues QMA0440_02620 SM00422 helix_turn_helix, mercury resistance QMA0440_02632 SM00493 QMA0440_02632 QMA0440_02634 SM00382 ATPases associated with a variety of cellular activities QMA0440_02635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_02635 SM00387 Histidine kinase-like ATPases QMA0440_02635 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_02636 SM00448 cheY-homologous receiver domain QMA0440_02636 SM00862 Transcriptional regulatory protein, C terminal QMA0440_02657 SM00938 Nitrogen regulatory protein P-II QMA0440_02658 SM00382 ATPases associated with a variety of cellular activities QMA0440_02659 SM00382 ATPases associated with a variety of cellular activities QMA0440_02660 SM00344 helix_turn_helix ASNC type QMA0440_02668 SM00411 bacterial (prokaryotic) histone like domain QMA0440_02669 SM00382 ATPases associated with a variety of cellular activities QMA0440_02669 SM00464 Found in ATP-dependent protease La (LON) QMA0440_02670 SM00382 ATPases associated with a variety of cellular activities QMA0440_02670 SM00994 ClpX C4-type zinc finger QMA0440_02670 SM01086 C-terminal, D2-small domain, of ClpB protein QMA0440_02689 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_02689 SM00387 Histidine kinase-like ATPases QMA0440_02689 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_02690 SM00448 cheY-homologous receiver domain QMA0440_02691 SM00981 QMA0440_02691 QMA0440_02694 SM00861 Transketolase, pyrimidine binding domain QMA0440_02703 SM01323 QMA0440_02703 QMA0440_02709 SM00642 Alpha-amylase domain QMA0440_02713 SM00091 PAS domain QMA0440_02713 SM00387 Histidine kinase-like ATPases QMA0440_02713 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_02714 SM00448 cheY-homologous receiver domain QMA0440_02714 SM00862 Transcriptional regulatory protein, C terminal QMA0440_02724 SM00346 helix_turn_helix isocitrate lyase regulation QMA0440_02733 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase QMA0440_02745 SM00900 QMA0440_02745 QMA0440_02753 SM00479 QMA0440_02753 QMA0440_02756 SM00849 Metallo-beta-lactamase superfamily QMA0440_02757 SM00257 Lysin motif QMA0440_02766 SM00382 ATPases associated with a variety of cellular activities QMA0440_02766 SM01086 C-terminal, D2-small domain, of ClpB protein QMA0440_02768 SM00363 S4 RNA-binding domain QMA0440_02771 SM00830 Chorismate mutase type II QMA0440_02772 SM00830 Chorismate mutase type II QMA0440_02774 SM00448 cheY-homologous receiver domain QMA0440_02774 SM00850 LytTr DNA-binding domain QMA0440_02781 SM00382 ATPases associated with a variety of cellular activities QMA0440_02781 SM00962 SRP54-type protein, GTPase domain QMA0440_02781 SM00963 SRP54-type protein, helical bundle domain QMA0440_02783 SM01091 Transporter associated domain QMA0440_02793 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain QMA0440_02795 SM00382 ATPases associated with a variety of cellular activities QMA0440_02802 SM00862 Transcriptional regulatory protein, C terminal QMA0440_02805 SM00382 ATPases associated with a variety of cellular activities QMA0440_02816 SM00495 Chitin-binding domain type 3 QMA0440_02818 SM00194 Protein tyrosine phosphatase, catalytic domain QMA0440_02818 SM00404 Protein tyrosine phosphatase, catalytic domain motif QMA0440_02833 SM00382 ATPases associated with a variety of cellular activities QMA0440_02838 SM00342 helix_turn_helix, arabinose operon control protein QMA0440_02850 SM00421 helix_turn_helix, Lux Regulon QMA0440_02850 SM00448 cheY-homologous receiver domain QMA0440_02851 SM00062 Bacterial periplasmic substrate-binding proteins QMA0440_02851 SM00387 Histidine kinase-like ATPases QMA0440_02851 SM00448 cheY-homologous receiver domain QMA0440_02869 SM00533 DNA-binding domain of DNA mismatch repair MUTS family QMA0440_02869 SM00534 ATPase domain of DNA mismatch repair MUTS family QMA0440_02871 SM00257 Lysin motif QMA0440_02891 SM01192 QMA0440_02891 QMA0440_02891 SM01193 QMA0440_02891 QMA0440_02894 SM00954 Region found in RelA / SpoT proteins QMA0440_02896 SM00073 Histidine Phosphotransfer domain QMA0440_02896 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_02896 SM00387 Histidine kinase-like ATPases QMA0440_02896 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_02896 SM00448 cheY-homologous receiver domain QMA0440_02897 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QMA0440_02898 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QMA0440_02906 SM00487 DEAD-like helicases superfamily QMA0440_02906 SM00490 helicase superfamily c-terminal domain QMA0440_02906 SM00847 Helicase associated domain (HA2) Add an annotation QMA0440_02918 SM00382 ATPases associated with a variety of cellular activities QMA0440_02919 SM00947 Carbonic anhydrase QMA0440_02933 SM00345 helix_turn_helix gluconate operon transcriptional repressor QMA0440_02933 SM00895 QMA0440_02933 QMA0440_02936 SM00644 QMA0440_02936 QMA0440_02941 SM01240 QMA0440_02941 QMA0440_02946 SM00957 SecA DEAD-like domain QMA0440_02946 SM00958 SecA preprotein cross-linking domain QMA0440_02950 SM00864 Tubulin/FtsZ family, GTPase domain QMA0440_02950 SM00865 Tubulin/FtsZ family, C-terminal domain QMA0440_02951 SM00842 Cell division protein FtsA QMA0440_02966 SM00354 helix_turn _helix lactose operon repressor QMA0440_02971 SM00917 LeuA allosteric (dimerisation) domain QMA0440_02972 SM01329 QMA0440_02972 QMA0440_02980 SM00382 ATPases associated with a variety of cellular activities QMA0440_02982 SM00486 DNA polymerase type-B family QMA0440_02984 SM00487 DEAD-like helicases superfamily QMA0440_02984 SM00490 helicase superfamily c-terminal domain QMA0440_02986 SM00271 DnaJ molecular chaperone homology domain QMA0440_02990 SM00650 Ribosomal RNA adenine dimethylases QMA0440_02998 SM00851 MGS-like domain QMA0440_02998 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain QMA0440_02999 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain QMA0440_03005 SM00904 Riboflavin kinase QMA0440_03009 SM00271 DnaJ molecular chaperone homology domain QMA0440_03014 SM00852 Probable molybdopterin binding domain QMA0440_03020 SM00448 cheY-homologous receiver domain QMA0440_03020 SM00862 Transcriptional regulatory protein, C terminal QMA0440_03022 SM00342 helix_turn_helix, arabinose operon control protein QMA0440_03022 SM00871 Bacterial transcription activator, effector binding domain QMA0440_03023 SM00855 Phosphoglycerate mutase family QMA0440_03027 SM00831 Cation transporter/ATPase, N-terminus QMA0440_03031 SM00382 ATPases associated with a variety of cellular activities QMA0440_03032 SM00530 Helix-turn-helix XRE-family like proteins QMA0440_03033 SM00382 ATPases associated with a variety of cellular activities QMA0440_03038 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain QMA0440_03039 SM01133 QMA0440_03039 QMA0440_03044 SM00749 bacterial OsmY and nodulation domain QMA0440_03053 SM00267 diguanylate cyclase QMA0440_03054 SM00091 PAS domain QMA0440_03056 SM01120 QMA0440_03056 QMA0440_03079 SM00420 helix_turn_helix, Deoxyribose operon repressor QMA0440_03079 SM01134 QMA0440_03079 QMA0440_03082 SM00869 Autotransporter beta-domain QMA0440_03092 SM00506 Appr-1"-p processing enzyme QMA0440_03104 SM00382 ATPases associated with a variety of cellular activities QMA0440_03107 SM00487 DEAD-like helicases superfamily QMA0440_03107 SM00490 helicase superfamily c-terminal domain QMA0440_03110 SM00487 DEAD-like helicases superfamily QMA0440_03110 SM00490 helicase superfamily c-terminal domain QMA0440_03127 SM00382 ATPases associated with a variety of cellular activities QMA0440_03128 SM00382 ATPases associated with a variety of cellular activities QMA0440_03130 SM00072 Guanylate kinase homologues. QMA0440_03132 SM00859 Semialdehyde dehydrogenase, NAD binding domain QMA0440_03145 SM00487 DEAD-like helicases superfamily QMA0440_03145 SM00490 helicase superfamily c-terminal domain QMA0440_03146 SM00028 Tetratricopeptide repeats QMA0440_03147 SM00316 Ribosomal protein S1-like RNA-binding domain QMA0440_03147 SM00322 K homology RNA-binding domain QMA0440_03148 SM01387 QMA0440_03148 QMA0440_03152 SM00316 Ribosomal protein S1-like RNA-binding domain QMA0440_03152 SM00322 K homology RNA-binding domain QMA0440_03159 SM00382 ATPases associated with a variety of cellular activities QMA0440_03161 SM01103 QMA0440_03161 QMA0440_03164 SM00448 cheY-homologous receiver domain QMA0440_03164 SM00862 Transcriptional regulatory protein, C terminal QMA0440_03165 SM00387 Histidine kinase-like ATPases QMA0440_03165 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_03183 SM00116 Domain in cystathionine beta-synthase and other proteins. QMA0440_03183 SM01091 Transporter associated domain QMA0440_03204 SM00967 RNA 2'-O ribose methyltransferase substrate binding QMA0440_03205 SM00316 Ribosomal protein S1-like RNA-binding domain QMA0440_03205 SM00357 Cold shock protein domain QMA0440_03205 SM00955 QMA0440_03205 QMA0440_03207 SM00788 Adenylosuccinate synthetase QMA0440_03209 SM00244 prohibitin homologues QMA0440_03210 SM00244 prohibitin homologues QMA0440_03214 SM00853 MutL C terminal dimerisation domain QMA0440_03214 SM01340 QMA0440_03214 QMA0440_03215 SM00257 Lysin motif QMA0440_03215 SM00646 QMA0440_03215 QMA0440_03222 SM00479 QMA0440_03222 QMA0440_03238 SM00421 helix_turn_helix, Lux Regulon QMA0440_03240 SM00841 Elongation factor P, C-terminal QMA0440_03240 SM01185 QMA0440_03240 QMA0440_03244 SM00883 Chaperonin 10 Kd subunit QMA0440_03293 SM01060 QMA0440_03293 QMA0440_03294 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. QMA0440_03295 SM01004 Delta-aminolevulinic acid dehydratase QMA0440_03314 SM00382 ATPases associated with a variety of cellular activities QMA0440_03324 SM00382 ATPases associated with a variety of cellular activities QMA0440_03325 SM00382 ATPases associated with a variety of cellular activities QMA0440_03335 SM00382 ATPases associated with a variety of cellular activities QMA0440_03336 SM00382 ATPases associated with a variety of cellular activities QMA0440_03336 SM00962 SRP54-type protein, GTPase domain QMA0440_03336 SM00963 SRP54-type protein, helical bundle domain QMA0440_03354 SM00341 Helicase and RNase D C-terminal QMA0440_03354 SM00487 DEAD-like helicases superfamily QMA0440_03354 SM00490 helicase superfamily c-terminal domain QMA0440_03354 SM00956 QMA0440_03354 QMA0440_03369 SM01219 QMA0440_03369 QMA0440_03390 SM00984 UDP binding domain QMA0440_03394 SM00357 Cold shock protein domain QMA0440_03394 SM00382 ATPases associated with a variety of cellular activities QMA0440_03394 SM00959 Rho termination factor, N-terminal domain QMA0440_03396 SM00487 DEAD-like helicases superfamily QMA0440_03396 SM00490 helicase superfamily c-terminal domain QMA0440_03402 SM00495 Chitin-binding domain type 3 QMA0440_03402 SM01276 QMA0440_03402 QMA0440_03408 SM00382 ATPases associated with a variety of cellular activities QMA0440_03432 SM00382 ATPases associated with a variety of cellular activities QMA0440_03438 SM00859 Semialdehyde dehydrogenase, NAD binding domain QMA0440_03449 SM00487 DEAD-like helicases superfamily QMA0440_03449 SM00490 helicase superfamily c-terminal domain QMA0440_03450 SM00354 helix_turn _helix lactose operon repressor QMA0440_03453 SM00382 ATPases associated with a variety of cellular activities QMA0440_03453 SM01086 C-terminal, D2-small domain, of ClpB protein QMA0440_03469 SM00448 cheY-homologous receiver domain QMA0440_03469 SM00862 Transcriptional regulatory protein, C terminal QMA0440_03470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_03470 SM00387 Histidine kinase-like ATPases QMA0440_03470 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_03472 SM00971 Serine acetyltransferase, N-terminal QMA0440_03476 SM00450 Rhodanese Homology Domain QMA0440_03480 SM00829 Enoylreductase QMA0440_03488 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain QMA0440_03488 SM01232 QMA0440_03488 QMA0440_03500 SM00052 Putative diguanylate phosphodiesterase QMA0440_03500 SM00091 PAS domain QMA0440_03500 SM00267 diguanylate cyclase QMA0440_03506 SM00532 Ligase N family QMA0440_03507 SM00072 Guanylate kinase homologues. QMA0440_03508 SM01409 QMA0440_03508 QMA0440_03509 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QMA0440_03509 SM00954 Region found in RelA / SpoT proteins QMA0440_03511 SM00487 DEAD-like helicases superfamily QMA0440_03511 SM00490 helicase superfamily c-terminal domain QMA0440_03520 SM01230 QMA0440_03520 QMA0440_03521 SM00091 PAS domain QMA0440_03521 SM00387 Histidine kinase-like ATPases QMA0440_03521 SM00388 His Kinase A (phosphoacceptor) domain QMA0440_03522 SM00382 ATPases associated with a variety of cellular activities QMA0440_03522 SM00448 cheY-homologous receiver domain QMA0440_03523 SM00729 Elongator protein 3, MiaB family, Radical SAM QMA0440_03526 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs QMA0440_03526 SM00474 3'-5' exonuclease QMA0440_03526 SM00475 5'-3' exonuclease QMA0440_03526 SM00482 DNA polymerase A domain QMA0440_03536 SM00345 helix_turn_helix gluconate operon transcriptional repressor QMA0440_03536 SM00895 QMA0440_03536 QMA0440_03537 SM00354 helix_turn _helix lactose operon repressor QMA0440_03541 SM00382 ATPases associated with a variety of cellular activities QMA0440_03544 SM00382 ATPases associated with a variety of cellular activities QMA0440_03545 SM00327 von Willebrand factor (vWF) type A domain QMA0440_03547 SM00344 helix_turn_helix ASNC type QMA0440_03549 SM01228 QMA0440_03549 QMA0440_03558 SM00382 ATPases associated with a variety of cellular activities QMA0440_03565 SM00382 ATPases associated with a variety of cellular activities QMA0440_03567 SM00062 Bacterial periplasmic substrate-binding proteins QMA0440_03571 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QMA0440_03571 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QMA0440_03578 SM01234 QMA0440_03578