locus-tag class description NJ56_00005 PF09330 D-lactate dehydrogenase, membrane binding NJ56_00005 PF01565 FAD binding domain NJ56_00010 PF00768 D-alanyl-D-alanine carboxypeptidase NJ56_00020 PF01207 Dihydrouridine synthase (Dus) NJ56_00025 PF00270 DEAD/DEAH box helicase NJ56_00025 PF00271 Helicase conserved C-terminal domain NJ56_00030 PF09209 Tetracyclin repressor-like, C-terminal domain NJ56_00030 PF00440 Bacterial regulatory proteins, tetR family NJ56_00035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJ56_00040 PF00005 ABC transporter NJ56_00055 PF01027 Inhibitor of apoptosis-promoting Bax1 NJ56_00060 PF02391 MoaE protein NJ56_00065 PF02597 ThiS family NJ56_00070 PF01967 MoaC family NJ56_00075 PF04055 Radical SAM superfamily NJ56_00075 PF06463 Molybdenum Cofactor Synthesis C NJ56_00080 PF01933 Uncharacterised protein family UPF0052 NJ56_00105 PF09905 DNA-binding protein VF530 NJ56_00110 PF02151 UvrB/uvrC motif NJ56_00110 PF12344 Ultra-violet resistance protein B NJ56_00110 PF17757 UvrB interaction domain NJ56_00110 PF00271 Helicase conserved C-terminal domain NJ56_00110 PF04851 Type III restriction enzyme, res subunit NJ56_00115 PF00005 ABC transporter NJ56_00125 PF08241 Methyltransferase domain NJ56_00130 PF00155 Aminotransferase class I and II NJ56_00135 PF06968 Biotin and Thiamin Synthesis associated domain NJ56_00135 PF04055 Radical SAM superfamily NJ56_00140 PF00202 Aminotransferase class-III NJ56_00145 PF10282 Lactonase, 7-bladed beta-propeller NJ56_00155 PF03459 TOBE domain NJ56_00155 PF00005 ABC transporter NJ56_00160 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_00170 PF10766 Multidrug efflux pump-associated protein AcrZ NJ56_00175 PF03459 TOBE domain NJ56_00175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_00185 PF16363 GDP-mannose 4,6 dehydratase NJ56_00190 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NJ56_00190 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NJ56_00195 PF08544 GHMP kinases C terminal NJ56_00195 PF00288 GHMP kinases N terminal domain NJ56_00195 PF10509 Galactokinase galactose-binding signature NJ56_00200 PF01263 Aldose 1-epimerase NJ56_00210 PF00300 Histidine phosphatase superfamily (branch 1) NJ56_00215 PF00793 DAHP synthetase I family NJ56_00220 PF00072 Response regulator receiver domain NJ56_00220 PF00196 Bacterial regulatory proteins, luxR family NJ56_00225 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJ56_00225 PF00072 Response regulator receiver domain NJ56_00225 PF00989 PAS fold NJ56_00225 PF01627 Hpt domain NJ56_00225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_00225 PF00512 His Kinase A (phospho-acceptor) domain NJ56_00230 PF04973 Nicotinamide mononucleotide transporter NJ56_00235 PF02445 Quinolinate synthetase A protein NJ56_00270 PF16331 TolA binding protein trimerisation NJ56_00270 PF13174 Tetratricopeptide repeat NJ56_00275 PF00691 OmpA family NJ56_00280 PF07676 WD40-like Beta Propeller Repeat NJ56_00280 PF04052 TolB amino-terminal domain NJ56_00285 PF06519 TolA C-terminal NJ56_00285 PF06519 TolA C-terminal NJ56_00290 PF02472 Biopolymer transport protein ExbD/TolR NJ56_00295 PF01618 MotA/TolQ/ExbB proton channel family NJ56_00300 PF03061 Thioesterase superfamily NJ56_00305 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) NJ56_00310 PF08173 Membrane bound YbgT-like protein NJ56_00315 PF02322 Cytochrome bd terminal oxidase subunit II NJ56_00320 PF01654 Cytochrome bd terminal oxidase subunit I NJ56_00325 PF02872 5'-nucleotidase, C-terminal domain NJ56_00325 PF00149 Calcineurin-like phosphoesterase NJ56_00330 PF00549 CoA-ligase NJ56_00330 PF02629 CoA binding domain NJ56_00335 PF00549 CoA-ligase NJ56_00335 PF08442 ATP-grasp domain NJ56_00340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NJ56_00340 PF00364 Biotin-requiring enzyme NJ56_00340 PF02817 e3 binding domain NJ56_00345 PF16870 2-oxoglutarate dehydrogenase C-terminal NJ56_00345 PF16078 2-oxoglutarate dehydrogenase N-terminus NJ56_00345 PF00676 Dehydrogenase E1 component NJ56_00345 PF02779 Transketolase, pyrimidine binding domain NJ56_00350 PF13085 2Fe-2S iron-sulfur cluster binding domain NJ56_00355 PF00890 FAD binding domain NJ56_00355 PF02910 Fumarate reductase flavoprotein C-term NJ56_00360 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NJ56_00365 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NJ56_00370 PF00285 Citrate synthase, C-terminal domain NJ56_00380 PF01470 Pyroglutamyl peptidase NJ56_00395 PF03746 LamB/YcsF family NJ56_00400 PF02626 Carboxyltransferase domain, subdomain A and B NJ56_00405 PF02682 Carboxyltransferase domain, subdomain C and D NJ56_00410 PF01784 NIF3 (NGG1p interacting factor 3) NJ56_00415 PF02112 cAMP phosphodiesterases class-II NJ56_00420 PF00875 DNA photolyase NJ56_00420 PF03441 FAD binding domain of DNA photolyase NJ56_00425 PF08349 Protein of unknown function (DUF1722) NJ56_00430 PF10725 Protein of unknown function (DUF2517) NJ56_00435 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) NJ56_00440 PF03814 Potassium-transporting ATPase A subunit NJ56_00450 PF02669 K+-transporting ATPase, c chain NJ56_00455 PF00512 His Kinase A (phospho-acceptor) domain NJ56_00455 PF13492 GAF domain NJ56_00455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_00455 PF13493 Domain of unknown function (DUF4118) NJ56_00455 PF02702 Osmosensitive K+ channel His kinase sensor domain NJ56_00460 PF00072 Response regulator receiver domain NJ56_00460 PF00486 Transcriptional regulatory protein, C terminal NJ56_00470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NJ56_00470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NJ56_00470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NJ56_00470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NJ56_00475 PF17206 SeqA protein N-terminal domain NJ56_00475 PF03925 SeqA protein C-terminal domain NJ56_00480 PF12697 Alpha/beta hydrolase family NJ56_00485 PF01402 Ribbon-helix-helix protein, copG family NJ56_00490 PF00672 HAMP domain NJ56_00490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJ56_00490 PF02203 Tar ligand binding domain homologue NJ56_00495 PF00258 Flavodoxin NJ56_00500 PF01475 Ferric uptake regulator family NJ56_00505 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain NJ56_00505 PF03173 Putative carbohydrate binding domain NJ56_00505 PF00728 Glycosyl hydrolase family 20, catalytic domain NJ56_00505 PF02838 Glycosyl hydrolase family 20, domain 2 NJ56_00510 PF13982 YbfN-like lipoprotein NJ56_00515 PF03573 outer membrane porin, OprD family NJ56_00520 PF00749 tRNA synthetases class I (E and Q), catalytic domain NJ56_00520 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NJ56_00525 PF00367 phosphotransferase system, EIIB NJ56_00525 PF02378 Phosphotransferase system, EIIC NJ56_00525 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NJ56_00530 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NJ56_00535 PF01979 Amidohydrolase family NJ56_00540 PF01047 MarR family NJ56_00540 PF00480 ROK family NJ56_00545 PF13344 Haloacid dehalogenase-like hydrolase NJ56_00550 PF00733 Asparagine synthase NJ56_00550 PF13537 Glutamine amidotransferase domain NJ56_00585 PF01494 FAD binding domain NJ56_00590 PF04055 Radical SAM superfamily NJ56_00590 PF01938 TRAM domain NJ56_00590 PF00919 Uncharacterized protein family UPF0004 NJ56_00595 PF02562 PhoH-like protein NJ56_00600 PF02130 Uncharacterized protein family UPF0054 NJ56_00605 PF03471 Transporter associated domain NJ56_00605 PF00571 CBS domain NJ56_00610 PF00795 Carbon-nitrogen hydrolase NJ56_00620 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJ56_00625 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_00630 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_00635 PF00005 ABC transporter NJ56_00640 PF07295 Zinc-ribbon containing domain NJ56_00645 PF13603 Leucyl-tRNA synthetase, Domain 2 NJ56_00645 PF00133 tRNA synthetases class I (I, L, M and V) NJ56_00645 PF08264 Anticodon-binding domain of tRNA NJ56_00650 PF04390 Lipopolysaccharide-assembly NJ56_00655 PF06144 DNA polymerase III, delta subunit NJ56_00655 PF14840 Processivity clamp loader gamma complex DNA pol III C-term NJ56_00660 PF01467 Cytidylyltransferase-like NJ56_00670 PF02590 Predicted SPOUT methyltransferase NJ56_00675 PF00905 Penicillin binding protein transpeptidase domain NJ56_00675 PF03717 Penicillin-binding Protein dimerisation domain NJ56_00680 PF01098 Cell cycle protein NJ56_00685 PF03330 Lytic transglycolase NJ56_00685 PF05036 Sporulation related domain NJ56_00690 PF07943 Penicillin-binding protein 5, C-terminal domain NJ56_00690 PF00768 D-alanyl-D-alanine carboxypeptidase NJ56_00695 PF04359 Protein of unknown function (DUF493) NJ56_00700 PF03099 Biotin/lipoate A/B protein ligase family NJ56_00705 PF04055 Radical SAM superfamily NJ56_00705 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NJ56_00710 PF02416 mttA/Hcf106 family NJ56_00715 PF05230 MASE2 domain NJ56_00715 PF00990 Diguanylate cyclase, GGDEF domain NJ56_00725 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NJ56_00730 PF00313 'Cold-shock' DNA-binding domain NJ56_00735 PF00313 'Cold-shock' DNA-binding domain NJ56_00740 PF00196 Bacterial regulatory proteins, luxR family NJ56_00765 PF00440 Bacterial regulatory proteins, tetR family NJ56_00770 PF00990 Diguanylate cyclase, GGDEF domain NJ56_00770 PF00072 Response regulator receiver domain NJ56_00775 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJ56_00775 PF00072 Response regulator receiver domain NJ56_00775 PF01627 Hpt domain NJ56_00775 PF00512 His Kinase A (phospho-acceptor) domain NJ56_00775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_00775 PF00672 HAMP domain NJ56_00800 PF07238 PilZ domain NJ56_00800 PF03552 Cellulose synthase NJ56_00800 PF00535 Glycosyl transferase family 2 NJ56_00810 PF00483 Nucleotidyl transferase NJ56_00820 PF00072 Response regulator receiver domain NJ56_00830 PF00343 Carbohydrate phosphorylase NJ56_00840 PF01292 Prokaryotic cytochrome b561 NJ56_00865 PF00501 AMP-binding enzyme NJ56_00875 PF03960 ArsC family NJ56_00880 PF02040 Arsenical pump membrane protein NJ56_00885 PF01022 Bacterial regulatory protein, arsR family NJ56_00910 PF13683 Integrase core domain NJ56_00910 PF13276 HTH-like domain NJ56_00920 PF13683 Integrase core domain NJ56_00920 PF13276 HTH-like domain NJ56_00925 PF00589 Phage integrase family NJ56_00935 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NJ56_00935 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NJ56_00970 PF02753 Pili assembly chaperone PapD, C-terminal domain NJ56_00970 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NJ56_00975 PF00577 Outer membrane usher protein NJ56_00975 PF13954 PapC N-terminal domain NJ56_00975 PF13953 PapC C-terminal domain NJ56_00980 PF00419 Fimbrial protein NJ56_00995 PF01406 tRNA synthetases class I (C) catalytic domain NJ56_00995 PF09190 DALR domain NJ56_01000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NJ56_01005 PF00149 Calcineurin-like phosphoesterase NJ56_01010 PF00731 AIR carboxylase NJ56_01015 PF02222 ATP-grasp domain NJ56_01015 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NJ56_01025 PF00005 ABC transporter NJ56_01030 PF13472 GDSL-like Lipase/Acylhydrolase family NJ56_01035 PF00106 short chain dehydrogenase NJ56_01040 PF00085 Thioredoxin NJ56_01045 PF01145 SPFH domain / Band 7 family NJ56_01045 PF16200 C-terminal region of band_7 NJ56_01050 PF01957 NfeD-like C-terminal, partner-binding NJ56_01055 PF13411 MerR HTH family regulatory protein NJ56_01060 PF00403 Heavy-metal-associated domain NJ56_01065 PF01963 TraB family NJ56_01070 PF04073 Aminoacyl-tRNA editing domain NJ56_01075 PF02872 5'-nucleotidase, C-terminal domain NJ56_01075 PF00149 Calcineurin-like phosphoesterase NJ56_01080 PF00999 Sodium/hydrogen exchanger family NJ56_01080 PF02254 TrkA-N domain NJ56_01085 PF00294 pfkB family carbohydrate kinase NJ56_01090 PF02706 Chain length determinant protein NJ56_01105 PF02350 UDP-N-acetylglucosamine 2-epimerase NJ56_01110 PF01370 NAD dependent epimerase/dehydratase family NJ56_01115 PF08485 Polysaccharide biosynthesis protein C-terminal NJ56_01115 PF02719 Polysaccharide biosynthesis protein NJ56_01120 PF00534 Glycosyl transferases group 1 NJ56_01145 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NJ56_01150 PF16363 GDP-mannose 4,6 dehydratase NJ56_01155 PF00483 Nucleotidyl transferase NJ56_01165 PF00762 Ferrochelatase NJ56_01170 PF05191 Adenylate kinase, active site lid NJ56_01175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_01175 PF00183 Hsp90 protein NJ56_01180 PF02132 RecR protein NJ56_01180 PF13662 Toprim domain NJ56_01185 PF02575 YbaB/EbfC DNA-binding family NJ56_01190 PF12169 DNA polymerase III subunits gamma and tau domain III NJ56_01190 PF12170 DNA polymerase III tau subunit V interacting with alpha NJ56_01190 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NJ56_01195 PF08521 Two-component sensor kinase N-terminal NJ56_01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_01195 PF00512 His Kinase A (phospho-acceptor) domain NJ56_01200 PF00072 Response regulator receiver domain NJ56_01200 PF00486 Transcriptional regulatory protein, C terminal NJ56_01215 PF01970 Tripartite tricarboxylate transporter TctA family NJ56_01220 PF00156 Phosphoribosyl transferase domain NJ56_01225 PF04304 Protein of unknown function (DUF454) NJ56_01235 PF10689 Protein of unknown function (DUF2496) NJ56_01240 PF00924 Mechanosensitive ion channel NJ56_01240 PF12794 Mechanosensitive ion channel inner membrane domain 1 NJ56_01240 PF12795 Mechanosensitive ion channel porin domain NJ56_01245 PF02635 DsrE/DsrF-like family NJ56_01250 PF00440 Bacterial regulatory proteins, tetR family NJ56_01250 PF08361 MAATS-type transcriptional repressor, C-terminal region NJ56_01255 PF00529 HlyD membrane-fusion protein of T1SS NJ56_01255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJ56_01260 PF00873 AcrB/AcrD/AcrF family NJ56_01265 PF01197 Ribosomal protein L31 NJ56_01270 PF00444 Ribosomal protein L36 NJ56_01280 PF10757 Biofilm formation regulator YbaJ NJ56_01285 PF05321 Haemolysin expression modulating protein NJ56_01295 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NJ56_01305 PF00909 Ammonium Transporter Family NJ56_01310 PF00543 Nitrogen regulatory protein P-II NJ56_01315 PF00005 ABC transporter NJ56_01315 PF00664 ABC transporter transmembrane region NJ56_01320 PF00005 ABC transporter NJ56_01320 PF00664 ABC transporter transmembrane region NJ56_01325 PF01037 Lrp/AsnC ligand binding domain NJ56_01325 PF13404 AsnC-type helix-turn-helix domain NJ56_01340 PF12793 Sugar transport-related sRNA regulator N-term NJ56_01340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJ56_01345 PF06508 Queuosine biosynthesis protein QueC NJ56_01360 PF13145 PPIC-type PPIASE domain NJ56_01365 PF00216 Bacterial DNA-binding protein NJ56_01370 PF00004 ATPase family associated with various cellular activities (AAA) NJ56_01370 PF05362 Lon protease (S16) C-terminal proteolytic domain NJ56_01370 PF02190 ATP-dependent protease La (LON) substrate-binding domain NJ56_01375 PF07724 AAA domain (Cdc48 subfamily) NJ56_01375 PF10431 C-terminal, D2-small domain, of ClpB protein NJ56_01375 PF06689 ClpX C4-type zinc finger NJ56_01380 PF00574 Clp protease NJ56_01385 PF05697 Bacterial trigger factor protein (TF) NJ56_01385 PF05698 Bacterial trigger factor protein (TF) C-terminus NJ56_01385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJ56_01395 PF01722 BolA-like protein NJ56_01400 PF08139 Prokaryotic membrane lipoprotein lipid attachment site NJ56_01400 PF03923 Uncharacterized lipoprotein NJ56_01405 PF07690 Major Facilitator Superfamily NJ56_01410 PF03502 Nucleoside-specific channel-forming protein, Tsx NJ56_01415 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NJ56_01415 PF06481 COX Aromatic Rich Motif NJ56_01420 PF00115 Cytochrome C and Quinol oxidase polypeptide I NJ56_01425 PF00510 Cytochrome c oxidase subunit III NJ56_01430 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NJ56_01435 PF01040 UbiA prenyltransferase family NJ56_01440 PF07690 Major Facilitator Superfamily NJ56_01445 PF04461 Protein of unknown function (DUF520) NJ56_01450 PF08546 Ketopantoate reductase PanE/ApbA C terminal NJ56_01450 PF02558 Ketopantoate reductase PanE/ApbA NJ56_01455 PF01965 DJ-1/PfpI family NJ56_01460 PF07690 Major Facilitator Superfamily NJ56_01470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_01470 PF00512 His Kinase A (phospho-acceptor) domain NJ56_01470 PF00672 HAMP domain NJ56_01475 PF02954 Bacterial regulatory protein, Fis family NJ56_01475 PF00072 Response regulator receiver domain NJ56_01475 PF14532 Sigma-54 interaction domain NJ56_01480 PF02926 THUMP domain NJ56_01480 PF02568 Thiamine biosynthesis protein (ThiI) NJ56_01485 PF02609 Exonuclease VII small subunit NJ56_01490 PF00348 Polyprenyl synthetase NJ56_01495 PF02780 Transketolase, C-terminal domain NJ56_01495 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NJ56_01495 PF02779 Transketolase, pyrimidine binding domain NJ56_01500 PF04608 Phosphatidylglycerophosphatase A NJ56_01505 PF00586 AIR synthase related protein, N-terminal domain NJ56_01505 PF02769 AIR synthase related protein, C-terminal domain NJ56_01510 PF01029 NusB family NJ56_01515 PF00885 6,7-dimethyl-8-ribityllumazine synthase NJ56_01520 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NJ56_01520 PF01872 RibD C-terminal domain NJ56_01525 PF03477 ATP cone domain NJ56_01530 PF02355 Protein export membrane protein NJ56_01530 PF07549 SecD/SecF GG Motif NJ56_01535 PF07549 SecD/SecF GG Motif NJ56_01535 PF13721 SecD export protein N-terminal TM region NJ56_01535 PF02355 Protein export membrane protein NJ56_01540 PF02699 Preprotein translocase subunit NJ56_01545 PF01702 Queuine tRNA-ribosyltransferase NJ56_01550 PF02547 Queuosine biosynthesis protein NJ56_01555 PF04336 Acyl carrier protein phosphodiesterase NJ56_01560 PF00578 AhpC/TSA family NJ56_01560 PF10417 C-terminal domain of 1-Cys peroxiredoxin NJ56_01570 PF00128 Alpha amylase, catalytic domain NJ56_01570 PF02903 Alpha amylase, N-terminal ig-like domain NJ56_01575 PF00324 Amino acid permease NJ56_01580 PF05525 Branched-chain amino acid transport protein NJ56_01585 PF12849 PBP superfamily domain NJ56_01590 PF00512 His Kinase A (phospho-acceptor) domain NJ56_01590 PF00989 PAS fold NJ56_01590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_01590 PF11808 Phosphate regulon sensor protein PhoR NJ56_01595 PF00072 Response regulator receiver domain NJ56_01595 PF00486 Transcriptional regulatory protein, C terminal NJ56_01600 PF12320 Type 5 capsule protein repressor C-terminal domain NJ56_01600 PF00149 Calcineurin-like phosphoesterase NJ56_01605 PF13476 AAA domain NJ56_01610 PF00480 ROK family NJ56_01615 PF04381 Putative exonuclease, RdgC NJ56_01620 PF06865 Pyrimidine/purine nucleoside phosphorylase NJ56_01625 PF07302 AroM protein NJ56_01645 PF01202 Shikimate kinase NJ56_01650 PF07715 TonB-dependent Receptor Plug Domain NJ56_01650 PF00593 TonB dependent receptor NJ56_01675 PF07238 PilZ domain NJ56_01675 PF07317 Flagellar regulator YcgR NJ56_01680 PF00171 Aldehyde dehydrogenase family NJ56_01685 PF00696 Amino acid kinase family NJ56_01685 PF01472 PUA domain NJ56_01690 PF07417 Sigma factor-binding transcriptional regulator Crl NJ56_01700 PF00156 Phosphoribosyl transferase domain NJ56_01705 PF07687 Peptidase dimerisation domain NJ56_01705 PF01546 Peptidase family M20/M25/M40 NJ56_01710 PF00817 impB/mucB/samB family NJ56_01710 PF11799 impB/mucB/samB family C-terminal domain NJ56_01710 PF11798 IMS family HHH motif NJ56_01715 PF03009 Glycerophosphoryl diester phosphodiesterase family NJ56_01720 PF04400 (Na+)-NQR maturation NqrM NJ56_01725 PF02424 ApbE family NJ56_01730 PF00970 Oxidoreductase FAD-binding domain NJ56_01730 PF00175 Oxidoreductase NAD-binding domain NJ56_01730 PF00111 2Fe-2S iron-sulfur cluster binding domain NJ56_01735 PF02508 Rnf-Nqr subunit, membrane protein NJ56_01740 PF02508 Rnf-Nqr subunit, membrane protein NJ56_01745 PF04205 FMN-binding domain NJ56_01750 PF03116 NQR2, RnfD, RnfE family NJ56_01755 PF11973 NQRA C-terminal domain NJ56_01755 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NJ56_01760 PF03734 L,D-transpeptidase catalytic domain NJ56_01765 PF13230 Glutamine amidotransferases class-II NJ56_01770 PF13580 SIS domain NJ56_01775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NJ56_01775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NJ56_01775 PF09317 Domain of unknown function (DUF1974) NJ56_01785 PF00929 Exonuclease NJ56_01790 PF00075 RNase H NJ56_01795 PF08241 Methyltransferase domain NJ56_01800 PF16123 Hydroxyacylglutathione hydrolase C-terminus NJ56_01800 PF00753 Metallo-beta-lactamase superfamily NJ56_01805 PF01476 LysM domain NJ56_01805 PF01464 Transglycosylase SLT domain NJ56_01810 PF03372 Endonuclease/Exonuclease/phosphatase family NJ56_01845 PF00004 ATPase family associated with various cellular activities (AAA) NJ56_01845 PF17871 AAA lid domain NJ56_01845 PF07724 AAA domain (Cdc48 subfamily) NJ56_01845 PF10431 C-terminal, D2-small domain, of ClpB protein NJ56_01845 PF02861 Clp amino terminal domain, pathogenicity island component NJ56_01855 PF01479 S4 domain NJ56_01855 PF00849 RNA pseudouridylate synthase NJ56_01865 PF13525 Outer membrane lipoprotein NJ56_01870 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NJ56_01875 PF01817 Chorismate mutase type II NJ56_01875 PF00800 Prephenate dehydratase NJ56_01880 PF01817 Chorismate mutase type II NJ56_01880 PF02153 Prephenate dehydrogenase NJ56_01885 PF00793 DAHP synthetase I family NJ56_01890 PF00072 Response regulator receiver domain NJ56_01890 PF04397 LytTr DNA-binding domain NJ56_01895 PF03605 Anaerobic c4-dicarboxylate membrane transporter NJ56_01900 PF04338 Protein of unknown function, DUF481 NJ56_01905 PF01245 Ribosomal protein L19 NJ56_01910 PF01746 tRNA (Guanine-1)-methyltransferase NJ56_01915 PF01782 RimM N-terminal domain NJ56_01915 PF05239 PRC-barrel domain NJ56_01920 PF00886 Ribosomal protein S16 NJ56_01925 PF00448 SRP54-type protein, GTPase domain NJ56_01925 PF02881 SRP54-type protein, helical bundle domain NJ56_01925 PF02978 Signal peptide binding domain NJ56_01930 PF01578 Cytochrome C assembly protein NJ56_01935 PF03471 Transporter associated domain NJ56_01935 PF00571 CBS domain NJ56_01935 PF01595 Cyclin M transmembrane N-terminal domain NJ56_01940 PF02664 S-Ribosylhomocysteinase (LuxS) NJ56_01945 PF04262 Glutamate-cysteine ligase NJ56_01950 PF09335 SNARE associated Golgi protein NJ56_01955 PF13419 Haloacid dehalogenase-like hydrolase NJ56_01980 PF02599 Global regulator protein family NJ56_01985 PF01411 tRNA synthetases class II (A) NJ56_01985 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NJ56_01985 PF02272 DHHA1 domain NJ56_01990 PF02631 RecX family NJ56_01995 PF00154 recA bacterial DNA recombination protein NJ56_02000 PF02464 Competence-damaged protein NJ56_02005 PF07690 Major Facilitator Superfamily NJ56_02010 PF05683 Fumarase C-terminus NJ56_02010 PF05681 Fumarate hydratase (Fumerase) NJ56_02035 PF11356 Type II secretion system protein C NJ56_02040 PF00263 Bacterial type II and III secretion system protein NJ56_02040 PF03958 Bacterial type II/III secretion system short domain NJ56_02050 PF00482 Type II secretion system (T2SS), protein F NJ56_02055 PF07963 Prokaryotic N-terminal methylation motif NJ56_02055 PF08334 Type II secretion system (T2SS), protein G NJ56_02060 PF07963 Prokaryotic N-terminal methylation motif NJ56_02060 PF12019 Type II transport protein GspH NJ56_02065 PF07963 Prokaryotic N-terminal methylation motif NJ56_02065 PF02501 Type II secretion system (T2SS), protein I NJ56_02070 PF07963 Prokaryotic N-terminal methylation motif NJ56_02070 PF11612 Type II secretion system (T2SS), protein J NJ56_02075 PF03934 Type II secretion system (T2SS), protein K NJ56_02080 PF12693 GspL periplasmic domain NJ56_02080 PF05134 Type II secretion system (T2SS), protein L NJ56_02090 PF01478 Type IV leader peptidase family NJ56_02090 PF06750 Bacterial Peptidase A24 N-terminal domain NJ56_02095 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) NJ56_02100 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NJ56_02100 PF18416 N-acetylglucosamine binding protein domain 2 NJ56_02120 PF00550 Phosphopantetheine attachment site NJ56_02145 PF07720 Tetratricopeptide repeat NJ56_02150 PF01312 FlhB HrpN YscU SpaS Family NJ56_02155 PF01311 Bacterial export proteins, family 1 NJ56_02160 PF01313 Bacterial export proteins, family 3 NJ56_02165 PF00813 FliP family NJ56_02170 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NJ56_02185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJ56_02185 PF02874 ATP synthase alpha/beta family, beta-barrel domain NJ56_02185 PF18269 T3SS EscN ATPase C-terminal domain NJ56_02195 PF00771 FHIPEP family NJ56_02200 PF07201 HrpJ-like domain NJ56_02210 PF12833 Helix-turn-helix domain NJ56_02230 PF01514 Secretory protein of YscJ/FliF family NJ56_02250 PF01464 Transglycosylase SLT domain NJ56_02265 PF00072 Response regulator receiver domain NJ56_02265 PF00196 Bacterial regulatory proteins, luxR family NJ56_02270 PF00512 His Kinase A (phospho-acceptor) domain NJ56_02270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_02270 PF00072 Response regulator receiver domain NJ56_02270 PF09308 LuxQ, periplasmic NJ56_02280 PF05192 MutS domain III NJ56_02280 PF05190 MutS family domain IV NJ56_02280 PF00488 MutS domain V NJ56_02280 PF01624 MutS domain I NJ56_02280 PF05188 MutS domain II NJ56_02285 PF04545 Sigma-70, region 4 NJ56_02285 PF00140 Sigma-70 factor, region 1.2 NJ56_02285 PF04539 Sigma-70 region 3 NJ56_02285 PF04542 Sigma-70 region 2 NJ56_02290 PF01476 LysM domain NJ56_02290 PF01551 Peptidase family M23 NJ56_02300 PF01975 Survival protein SurE NJ56_02305 PF01142 tRNA pseudouridine synthase D (TruD) NJ56_02310 PF02542 YgbB family NJ56_02315 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NJ56_02320 PF04977 Septum formation initiator NJ56_02325 PF12084 Protein of unknown function (DUF3561) NJ56_02335 PF00009 Elongation factor Tu GTP binding domain NJ56_02340 PF01507 Phosphoadenosine phosphosulfate reductase family NJ56_02345 PF10414 Sirohaem synthase dimerisation region NJ56_02345 PF14824 Sirohaem biosynthesis protein central NJ56_02345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NJ56_02350 PF04389 Peptidase family M28 NJ56_02365 PF01507 Phosphoadenosine phosphosulfate reductase family NJ56_02370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NJ56_02370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NJ56_02375 PF00258 Flavodoxin NJ56_02375 PF00667 FAD binding domain NJ56_02375 PF00175 Oxidoreductase NAD-binding domain NJ56_02380 PF01242 6-pyruvoyl tetrahydropterin synthase NJ56_02385 PF04055 Radical SAM superfamily NJ56_02390 PF00113 Enolase, C-terminal TIM barrel domain NJ56_02390 PF03952 Enolase, N-terminal domain NJ56_02395 PF00117 Glutamine amidotransferase class-I NJ56_02395 PF06418 CTP synthase N-terminus NJ56_02400 PF03819 MazG nucleotide pyrophosphohydrolase domain NJ56_02405 PF02824 TGS domain NJ56_02405 PF04607 Region found in RelA / SpoT proteins NJ56_02405 PF13291 ACT domain NJ56_02410 PF01938 TRAM domain NJ56_02410 PF05958 tRNA (Uracil-5-)-methyltransferase NJ56_02415 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJ56_02415 PF00072 Response regulator receiver domain NJ56_02415 PF00512 His Kinase A (phospho-acceptor) domain NJ56_02415 PF00672 HAMP domain NJ56_02415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_02415 PF01627 Hpt domain NJ56_02420 PF00595 PDZ domain NJ56_02425 PF01966 HD domain NJ56_02425 PF13286 Phosphohydrolase-associated domain NJ56_02430 PF01048 Phosphorylase superfamily NJ56_02435 PF01497 Periplasmic binding protein NJ56_02440 PF03458 UPF0126 domain NJ56_02445 PF01521 Iron-sulphur cluster biosynthesis NJ56_02450 PF00654 Voltage gated chloride channel NJ56_02455 PF00202 Aminotransferase class-III NJ56_02460 PF14814 Bifunctional transglycosylase second domain NJ56_02460 PF00912 Transglycosylase NJ56_02460 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal NJ56_02460 PF00905 Penicillin binding protein transpeptidase domain NJ56_02465 PF00270 DEAD/DEAH box helicase NJ56_02465 PF04408 Helicase associated domain (HA2) NJ56_02465 PF08482 ATP-dependent helicase C-terminal NJ56_02465 PF00271 Helicase conserved C-terminal domain NJ56_02470 PF02834 LigT like Phosphoesterase NJ56_02475 PF17746 SfsA N-terminal OB domain NJ56_02475 PF03749 Sugar fermentation stimulation protein RE domain NJ56_02485 PF01258 Prokaryotic dksA/traR C4-type zinc finger NJ56_02490 PF00749 tRNA synthetases class I (E and Q), catalytic domain NJ56_02495 PF12627 Probable RNA and SrmB- binding site of polymerase A NJ56_02495 PF01743 Poly A polymerase head domain NJ56_02495 PF12626 Polymerase A arginine-rich C-terminus NJ56_02500 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NJ56_02505 PF02548 Ketopantoate hydroxymethyltransferase NJ56_02510 PF02569 Pantoate-beta-alanine ligase NJ56_02515 PF02261 Aspartate decarboxylase NJ56_02520 PF01522 Polysaccharide deacetylase NJ56_02525 PF01061 ABC-2 type transporter NJ56_02530 PF00005 ABC transporter NJ56_02535 PF00484 Carbonic anhydrase NJ56_02540 PF00156 Phosphoribosyl transferase domain NJ56_02545 PF00394 Multicopper oxidase NJ56_02545 PF07731 Multicopper oxidase NJ56_02545 PF07732 Multicopper oxidase NJ56_02545 PF10518 TAT (twin-arginine translocation) pathway signal sequence NJ56_02550 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) NJ56_02555 PF17284 Spermidine synthase tetramerisation domain NJ56_02560 PF02675 S-adenosylmethionine decarboxylase NJ56_02565 PF00892 EamA-like transporter family NJ56_02570 PF06062 Uncharacterised protein family (UPF0231) NJ56_02575 PF00330 Aconitase family (aconitate hydratase) NJ56_02575 PF11791 Aconitate B N-terminal domain NJ56_02575 PF06434 Aconitate hydratase 2 N-terminus NJ56_02585 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJ56_02585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJ56_02590 PF02817 e3 binding domain NJ56_02590 PF00364 Biotin-requiring enzyme NJ56_02590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NJ56_02595 PF00456 Transketolase, thiamine diphosphate binding domain NJ56_02595 PF17831 Pyruvate dehydrogenase E1 component middle domain NJ56_02600 PF07729 FCD domain NJ56_02600 PF00392 Bacterial regulatory proteins, gntR family NJ56_02610 PF00324 Amino acid permease NJ56_02615 PF17113 Regulatory signalling modulator protein AmpE NJ56_02620 PF01510 N-acetylmuramoyl-L-alanine amidase NJ56_02625 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NJ56_02625 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NJ56_02630 PF07963 Prokaryotic N-terminal methylation motif NJ56_02635 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NJ56_02635 PF00437 Type II/IV secretion system protein NJ56_02640 PF00482 Type II secretion system (T2SS), protein F NJ56_02645 PF00478 IMP dehydrogenase / GMP reductase domain NJ56_02650 PF01121 Dephospho-CoA kinase NJ56_02655 PF07072 Cell division protein NJ56_02660 PF03884 DNA gyrase inhibitor YacG NJ56_02665 PF00293 NUDIX domain NJ56_02670 PF07516 SecA Wing and Scaffold domain NJ56_02670 PF07517 SecA DEAD-like domain NJ56_02670 PF02810 SEC-C motif NJ56_02670 PF01043 SecA preprotein cross-linking domain NJ56_02675 PF06558 Secretion monitor precursor protein (SecM) NJ56_02685 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NJ56_02690 PF00091 Tubulin/FtsZ family, GTPase domain NJ56_02690 PF12327 FtsZ family, C-terminal domain NJ56_02695 PF02491 SHS2 domain inserted in FTSA NJ56_02700 PF08478 POTRA domain, FtsQ-type NJ56_02700 PF03799 Cell division protein FtsQ NJ56_02705 PF01820 D-ala D-ala ligase N-terminus NJ56_02705 PF07478 D-ala D-ala ligase C-terminus NJ56_02710 PF08245 Mur ligase middle domain NJ56_02710 PF01225 Mur ligase family, catalytic domain NJ56_02710 PF02875 Mur ligase family, glutamate ligase domain NJ56_02715 PF04101 Glycosyltransferase family 28 C-terminal domain NJ56_02715 PF03033 Glycosyltransferase family 28 N-terminal domain NJ56_02720 PF01098 Cell cycle protein NJ56_02725 PF02875 Mur ligase family, glutamate ligase domain NJ56_02725 PF08245 Mur ligase middle domain NJ56_02730 PF00953 Glycosyl transferase family 4 NJ56_02730 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NJ56_02735 PF01225 Mur ligase family, catalytic domain NJ56_02735 PF08245 Mur ligase middle domain NJ56_02735 PF02875 Mur ligase family, glutamate ligase domain NJ56_02740 PF01225 Mur ligase family, catalytic domain NJ56_02740 PF08245 Mur ligase middle domain NJ56_02740 PF02875 Mur ligase family, glutamate ligase domain NJ56_02745 PF03717 Penicillin-binding Protein dimerisation domain NJ56_02745 PF00905 Penicillin binding protein transpeptidase domain NJ56_02750 PF04999 Cell division protein FtsL NJ56_02755 PF01795 MraW methylase family NJ56_02760 PF02381 MraZ protein, putative antitoxin-like NJ56_02765 PF06610 L-alanine exporter NJ56_02770 PF07282 Putative transposase DNA-binding domain NJ56_02770 PF01385 Probable transposase NJ56_02770 PF12323 Helix-turn-helix domain NJ56_02775 PF01797 Transposase IS200 like NJ56_02780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NJ56_02780 PF00356 Bacterial regulatory proteins, lacI family NJ56_02785 PF10369 Small subunit of acetolactate synthase NJ56_02790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJ56_02790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NJ56_02790 PF00205 Thiamine pyrophosphate enzyme, central domain NJ56_02795 PF00501 AMP-binding enzyme NJ56_02800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_02800 PF03466 LysR substrate binding domain NJ56_02805 PF08502 LeuA allosteric (dimerisation) domain NJ56_02805 PF00682 HMGL-like NJ56_02810 PF00180 Isocitrate/isopropylmalate dehydrogenase NJ56_02815 PF00330 Aconitase family (aconitate hydratase) NJ56_02820 PF00694 Aconitase C-terminal domain NJ56_02825 PF07690 Major Facilitator Superfamily NJ56_02835 PF12793 Sugar transport-related sRNA regulator N-term NJ56_02835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJ56_02845 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_02850 PF00005 ABC transporter NJ56_02855 PF09335 SNARE associated Golgi protein NJ56_02860 PF00136 DNA polymerase family B NJ56_02860 PF03104 DNA polymerase family B, exonuclease domain NJ56_02865 PF18339 RapA N-terminal Tudor like domain 1 NJ56_02865 PF00176 SNF2 family N-terminal domain NJ56_02865 PF12137 RNA polymerase recycling family C-terminal NJ56_02865 PF00271 Helicase conserved C-terminal domain NJ56_02865 PF18337 RapA N-terminal Tudor like domain NJ56_02870 PF00849 RNA pseudouridylate synthase NJ56_02875 PF05099 Tellurite resistance protein TerB NJ56_02875 PF00226 DnaJ domain NJ56_02880 PF04453 LPS transport system D NJ56_02880 PF03968 OstA-like protein NJ56_02885 PF09312 SurA N-terminal domain NJ56_02885 PF00639 PPIC-type PPIASE domain NJ56_02890 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NJ56_02895 PF00398 Ribosomal RNA adenine dimethylase NJ56_02900 PF04379 ApaG domain NJ56_02905 PF00149 Calcineurin-like phosphoesterase NJ56_02915 PF00186 Dihydrofolate reductase NJ56_02920 PF12821 Threonine/Serine exporter, ThrE NJ56_02925 PF06738 Putative threonine/serine exporter NJ56_02930 PF01810 LysE type translocator NJ56_02935 PF02142 MGS-like domain NJ56_02935 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NJ56_02935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NJ56_02940 PF00117 Glutamine amidotransferase class-I NJ56_02940 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NJ56_02945 PF01113 Dihydrodipicolinate reductase, N-terminus NJ56_02945 PF05173 Dihydrodipicolinate reductase, C-terminus NJ56_02950 PF02401 LytB protein NJ56_02955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJ56_02960 PF01252 Signal peptidase (SPase) II NJ56_02965 PF00133 tRNA synthetases class I (I, L, M and V) NJ56_02965 PF06827 Zinc finger found in FPG and IleRS NJ56_02965 PF08264 Anticodon-binding domain of tRNA NJ56_02970 PF06574 FAD synthetase NJ56_02970 PF01687 Riboflavin kinase NJ56_02980 PF01649 Ribosomal protein S20 NJ56_02985 PF03466 LysR substrate binding domain NJ56_02985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_02990 PF06965 Na+/H+ antiporter 1 NJ56_02995 PF00226 DnaJ domain NJ56_02995 PF00684 DnaJ central domain NJ56_02995 PF01556 DnaJ C terminal domain NJ56_03000 PF00012 Hsp70 protein NJ56_03005 PF01184 GPR1/FUN34/yaaH family NJ56_03015 PF07690 Major Facilitator Superfamily NJ56_03020 PF00994 Probable molybdopterin binding domain NJ56_03025 PF00923 Transaldolase/Fructose-6-phosphate aldolase NJ56_03030 PF03883 Peroxide stress protein YaaA NJ56_03035 PF00291 Pyridoxal-phosphate dependent enzyme NJ56_03035 PF14821 Threonine synthase N terminus NJ56_03040 PF00288 GHMP kinases N terminal domain NJ56_03040 PF08544 GHMP kinases C terminal NJ56_03045 PF00696 Amino acid kinase family NJ56_03045 PF13840 ACT domain NJ56_03045 PF03447 Homoserine dehydrogenase, NAD binding domain NJ56_03045 PF00742 Homoserine dehydrogenase NJ56_03045 PF01842 ACT domain NJ56_03050 PF08254 Threonine leader peptide NJ56_03055 PF00486 Transcriptional regulatory protein, C terminal NJ56_03055 PF00072 Response regulator receiver domain NJ56_03060 PF05981 CreA protein NJ56_03065 PF06445 GyrI-like small molecule binding domain NJ56_03065 PF12833 Helix-turn-helix domain NJ56_03070 PF00300 Histidine phosphatase superfamily (branch 1) NJ56_03075 PF01931 Protein of unknown function DUF84 NJ56_03080 PF01371 Trp repressor protein NJ56_03085 PF01464 Transglycosylase SLT domain NJ56_03085 PF14718 Soluble lytic murein transglycosylase L domain NJ56_03090 PF00690 Cation transporter/ATPase, N-terminus NJ56_03090 PF00689 Cation transporting ATPase, C-terminus NJ56_03105 PF12848 ABC transporter NJ56_03105 PF00005 ABC transporter NJ56_03110 PF01381 Helix-turn-helix NJ56_03110 PF13521 AAA domain NJ56_03115 PF18073 Rubredoxin metal binding domain NJ56_03120 PF18429 Domain of unknown function (DUF5609) NJ56_03125 PF10144 Bacterial virulence factor haemolysin NJ56_03130 PF01048 Phosphorylase superfamily NJ56_03135 PF01676 Metalloenzyme superfamily NJ56_03140 PF00591 Glycosyl transferase family, a/b domain NJ56_03140 PF02885 Glycosyl transferase family, helical bundle domain NJ56_03140 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NJ56_03145 PF01791 DeoC/LacD family aldolase NJ56_03150 PF07662 Na+ dependent nucleoside transporter C-terminus NJ56_03150 PF07670 Nucleoside recognition NJ56_03150 PF01773 Na+ dependent nucleoside transporter N-terminus NJ56_03155 PF01026 TatD related DNase NJ56_03160 PF01734 Patatin-like phospholipase NJ56_03165 PF07043 Protein of unknown function (DUF1328) NJ56_03170 PF04972 BON domain NJ56_03175 PF16658 Class II release factor RF3, C-terminal domain NJ56_03175 PF03144 Elongation factor Tu domain 2 NJ56_03175 PF00009 Elongation factor Tu GTP binding domain NJ56_03180 PF00583 Acetyltransferase (GNAT) family NJ56_03185 PF03603 DNA polymerase III psi subunit NJ56_03190 PF05175 Methyltransferase small domain NJ56_03190 PF08468 Methyltransferase small domain N-terminal NJ56_03210 PF07256 Protein of unknown function (DUF1435) NJ56_03215 PF00990 Diguanylate cyclase, GGDEF domain NJ56_03220 PF00158 Sigma-54 interaction domain NJ56_03220 PF02954 Bacterial regulatory protein, Fis family NJ56_03220 PF00989 PAS fold NJ56_03225 PF00391 PEP-utilising enzyme, mobile domain NJ56_03225 PF05524 PEP-utilising enzyme, N-terminal NJ56_03225 PF03610 PTS system fructose IIA component NJ56_03225 PF00381 PTS HPr component phosphorylation site NJ56_03230 PF02734 DAK2 domain NJ56_03235 PF02733 Dak1 domain NJ56_03240 PF00465 Iron-containing alcohol dehydrogenase NJ56_03245 PF00873 AcrB/AcrD/AcrF family NJ56_03250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJ56_03265 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NJ56_03270 PF10696 Protein of unknown function (DUF2501) NJ56_03280 PF01116 Fructose-bisphosphate aldolase class-II NJ56_03290 PF00884 Sulfatase NJ56_03295 PF04055 Radical SAM superfamily NJ56_03295 PF13186 Iron-sulfur cluster-binding domain NJ56_03310 PF04962 KduI/IolB family NJ56_03315 PF01979 Amidohydrolase family NJ56_03325 PF03613 PTS system mannose/fructose/sorbose family IID component NJ56_03330 PF03609 PTS system sorbose-specific iic component NJ56_03335 PF03830 PTS system sorbose subfamily IIB component NJ56_03340 PF01380 SIS domain NJ56_03345 PF08013 Tagatose 6 phosphate kinase NJ56_03350 PF00455 DeoR C terminal sensor domain NJ56_03350 PF08220 DeoR-like helix-turn-helix domain NJ56_03355 PF00884 Sulfatase NJ56_03360 PF02278 Polysaccharide lyase family 8, super-sandwich domain NJ56_03360 PF09092 Lyase, N terminal NJ56_03360 PF09093 Lyase, catalytic NJ56_03360 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain NJ56_03375 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain NJ56_03375 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain NJ56_03375 PF02278 Polysaccharide lyase family 8, super-sandwich domain NJ56_03380 PF06178 Oligogalacturonate-specific porin protein (KdgM) NJ56_03385 PF01344 Kelch motif NJ56_03390 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A NJ56_03395 PF03230 Antirestriction protein NJ56_03460 PF05016 ParE toxin of type II toxin-antitoxin system, parDE NJ56_03465 PF04221 RelB antitoxin NJ56_03495 PF00004 ATPase family associated with various cellular activities (AAA) NJ56_03550 PF03852 DNA mismatch endonuclease Vsr NJ56_03555 PF18284 DNA methylase N-terminal domain NJ56_03555 PF00145 C-5 cytosine-specific DNA methylase NJ56_03560 PF09019 EcoRII C terminal NJ56_03560 PF09217 Restriction endonuclease EcoRII, N-terminal NJ56_03585 PF00589 Phage integrase family NJ56_03585 PF13356 Arm DNA-binding domain NJ56_03595 PF03739 Lipopolysaccharide export system permease LptF/LptG NJ56_03600 PF03739 Lipopolysaccharide export system permease LptF/LptG NJ56_03605 PF00883 Cytosol aminopeptidase family, catalytic domain NJ56_03605 PF02789 Cytosol aminopeptidase family, N-terminal domain NJ56_03610 PF04364 DNA polymerase III chi subunit, HolC NJ56_03615 PF00133 tRNA synthetases class I (I, L, M and V) NJ56_03615 PF08264 Anticodon-binding domain of tRNA NJ56_03615 PF10458 Valyl tRNA synthetase tRNA binding arm NJ56_03620 PF00583 Acetyltransferase (GNAT) family NJ56_03625 PF06877 Regulator of ribonuclease activity B NJ56_03630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NJ56_03630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NJ56_03635 PF13597 Anaerobic ribonucleoside-triphosphate reductase NJ56_03635 PF03477 ATP cone domain NJ56_03645 PF06754 Phosphonate metabolism protein PhnG NJ56_03650 PF05845 Bacterial phosphonate metabolism protein (PhnH) NJ56_03655 PF05861 Bacterial phosphonate metabolism protein (PhnI) NJ56_03660 PF06007 Phosphonate metabolism protein PhnJ NJ56_03665 PF00005 ABC transporter NJ56_03670 PF00005 ABC transporter NJ56_03675 PF07969 Amidohydrolase family NJ56_03685 PF12706 Beta-lactamase superfamily domain NJ56_03690 PF13460 NAD(P)H-binding NJ56_03700 PF01276 Orn/Lys/Arg decarboxylase, major domain NJ56_03700 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain NJ56_03700 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NJ56_03705 PF13520 Amino acid permease NJ56_03710 PF01541 GIY-YIG catalytic domain NJ56_03715 PF13508 Acetyltransferase (GNAT) domain NJ56_03735 PF03313 Serine dehydratase alpha chain NJ56_03745 PF00296 Luciferase-like monooxygenase NJ56_03750 PF12343 Cold shock protein DEAD box A NJ56_03750 PF00271 Helicase conserved C-terminal domain NJ56_03750 PF00270 DEAD/DEAH box helicase NJ56_03750 PF03880 DbpA RNA binding domain NJ56_03760 PF07719 Tetratricopeptide repeat NJ56_03760 PF13181 Tetratricopeptide repeat NJ56_03765 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NJ56_03765 PF00013 KH domain NJ56_03765 PF00575 S1 RNA binding domain NJ56_03765 PF01138 3' exoribonuclease family, domain 1 NJ56_03765 PF03725 3' exoribonuclease family, domain 2 NJ56_03770 PF00312 Ribosomal protein S15 NJ56_03775 PF01509 TruB family pseudouridylate synthase (N terminal domain) NJ56_03775 PF16198 tRNA pseudouridylate synthase B C-terminal domain NJ56_03775 PF09157 Pseudouridine synthase II TruB, C-terminal NJ56_03780 PF02033 Ribosome-binding factor A NJ56_03785 PF11987 Translation-initiation factor 2 NJ56_03785 PF04760 Translation initiation factor IF-2, N-terminal region NJ56_03785 PF08364 Bacterial translation initiation factor IF-2 associated region NJ56_03785 PF03144 Elongation factor Tu domain 2 NJ56_03785 PF00009 Elongation factor Tu GTP binding domain NJ56_03790 PF13184 NusA-like KH domain NJ56_03790 PF08529 NusA N-terminal domain NJ56_03790 PF00575 S1 RNA binding domain NJ56_03795 PF17384 RimP C-terminal SH3 domain NJ56_03795 PF02576 RimP N-terminal domain NJ56_03810 PF03840 Preprotein translocase SecG subunit NJ56_03815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NJ56_03815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NJ56_03815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NJ56_03815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NJ56_03820 PF00809 Pterin binding enzyme NJ56_03825 PF00004 ATPase family associated with various cellular activities (AAA) NJ56_03825 PF06480 FtsH Extracellular NJ56_03825 PF17862 AAA+ lid domain NJ56_03825 PF01434 Peptidase family M41 NJ56_03830 PF01728 FtsJ-like methyltransferase NJ56_03835 PF01985 CRS1 / YhbY (CRM) domain NJ56_03840 PF03449 Transcription elongation factor, N-terminal NJ56_03840 PF01272 Transcription elongation factor, GreA/GreB, C-term NJ56_03845 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NJ56_03850 PF00072 Response regulator receiver domain NJ56_03850 PF00486 Transcriptional regulatory protein, C terminal NJ56_03855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_03855 PF00672 HAMP domain NJ56_03855 PF00512 His Kinase A (phospho-acceptor) domain NJ56_03860 PF01926 50S ribosome-binding GTPase NJ56_03860 PF01018 GTP1/OBG NJ56_03865 PF00892 EamA-like transporter family NJ56_03870 PF01016 Ribosomal L27 protein NJ56_03875 PF00829 Ribosomal prokaryotic L21 protein NJ56_03880 PF00348 Polyprenyl synthetase NJ56_03895 PF13693 Winged helix-turn-helix DNA-binding NJ56_03900 PF00056 lactate/malate dehydrogenase, NAD binding domain NJ56_03900 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NJ56_03905 PF01316 Arginine repressor, DNA binding domain NJ56_03905 PF02863 Arginine repressor, C-terminal domain NJ56_03910 PF08245 Mur ligase middle domain NJ56_03910 PF01225 Mur ligase family, catalytic domain NJ56_03910 PF02875 Mur ligase family, glutamate ligase domain NJ56_03915 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NJ56_03920 PF00719 Inorganic pyrophosphatase NJ56_03925 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like NJ56_03930 PF04357 TamB, inner membrane protein subunit of TAM complex NJ56_03935 PF17243 POTRA domain TamA domain 1 NJ56_03935 PF07244 Surface antigen variable number repeat NJ56_03935 PF01103 Surface antigen NJ56_03940 PF01625 Peptide methionine sulfoxide reductase NJ56_03945 PF01595 Cyclin M transmembrane N-terminal domain NJ56_03945 PF03471 Transporter associated domain NJ56_03945 PF00571 CBS domain NJ56_03950 PF06526 Protein of unknown function (DUF1107) NJ56_03955 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) NJ56_03960 PF00459 Inositol monophosphatase family NJ56_03965 PF02872 5'-nucleotidase, C-terminal domain NJ56_03965 PF00149 Calcineurin-like phosphoesterase NJ56_03970 PF04405 Domain of Unknown function (DUF542) NJ56_03970 PF01814 Hemerythrin HHE cation binding domain NJ56_03975 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NJ56_03975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJ56_03980 PF04225 Opacity-associated protein A LysM-like domain NJ56_03980 PF08525 Opacity-associated protein A N-terminal motif NJ56_03985 PF01281 Ribosomal protein L9, N-terminal domain NJ56_03985 PF03948 Ribosomal protein L9, C-terminal domain NJ56_03990 PF01084 Ribosomal protein S18 NJ56_03995 PF00436 Single-strand binding protein family NJ56_04000 PF01250 Ribosomal protein S6 NJ56_04015 PF00326 Prolyl oligopeptidase family NJ56_04035 PF00577 Outer membrane usher protein NJ56_04035 PF13954 PapC N-terminal domain NJ56_04035 PF13953 PapC C-terminal domain NJ56_04040 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NJ56_04060 PF00588 SpoU rRNA Methylase family NJ56_04060 PF08032 RNA 2'-O ribose methyltransferase substrate binding NJ56_04065 PF08206 Ribonuclease B OB domain NJ56_04065 PF00575 S1 RNA binding domain NJ56_04065 PF00773 RNB domain NJ56_04065 PF08461 Ribonuclease R winged-helix domain NJ56_04065 PF17876 Cold shock domain NJ56_04070 PF02082 Transcriptional regulator NJ56_04075 PF00709 Adenylosuccinate synthetase NJ56_04080 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) NJ56_04085 PF01145 SPFH domain / Band 7 family NJ56_04090 PF01145 SPFH domain / Band 7 family NJ56_04090 PF12221 Bacterial membrane protein N terminal NJ56_04095 PF01926 50S ribosome-binding GTPase NJ56_04095 PF13167 GTP-binding GTPase N-terminal NJ56_04095 PF16360 GTP-binding GTPase Middle Region NJ56_04100 PF17209 Hfq protein NJ56_04110 PF08676 MutL C terminal dimerisation domain NJ56_04110 PF01119 DNA mismatch repair protein, C-terminal domain NJ56_04115 PF01520 N-acetylmuramoyl-L-alanine amidase NJ56_04120 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NJ56_04125 PF01256 Carbohydrate kinase NJ56_04125 PF03853 YjeF-related protein N-terminus NJ56_04130 PF08331 Domain of unknown function (DUF1730) NJ56_04150 PF00929 Exonuclease NJ56_04155 PF03193 RsgA GTPase NJ56_04160 PF02666 Phosphatidylserine decarboxylase NJ56_04165 PF12794 Mechanosensitive ion channel inner membrane domain 1 NJ56_04165 PF00924 Mechanosensitive ion channel NJ56_04165 PF12795 Mechanosensitive ion channel porin domain NJ56_04170 PF00152 tRNA synthetases class II (D, K and N) NJ56_04175 PF00890 FAD binding domain NJ56_04175 PF02910 Fumarate reductase flavoprotein C-term NJ56_04180 PF13085 2Fe-2S iron-sulfur cluster binding domain NJ56_04180 PF13183 4Fe-4S dicluster domain NJ56_04185 PF02300 Fumarate reductase subunit C NJ56_04190 PF02313 Fumarate reductase subunit D NJ56_04195 PF08212 Lipocalin-like domain NJ56_04200 PF00893 Small Multidrug Resistance protein NJ56_04205 PF00419 Fimbrial protein NJ56_04210 PF00577 Outer membrane usher protein NJ56_04210 PF13953 PapC C-terminal domain NJ56_04210 PF13954 PapC N-terminal domain NJ56_04215 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NJ56_04215 PF02753 Pili assembly chaperone PapD, C-terminal domain NJ56_04225 PF00196 Bacterial regulatory proteins, luxR family NJ56_04230 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NJ56_04230 PF18416 N-acetylglucosamine binding protein domain 2 NJ56_04235 PF01132 Elongation factor P (EF-P) OB domain NJ56_04235 PF08207 Elongation factor P (EF-P) KOW-like domain NJ56_04235 PF09285 Elongation factor P, C-terminal NJ56_04240 PF04055 Radical SAM superfamily NJ56_04245 PF13698 Domain of unknown function (DUF4156) NJ56_04250 PF00118 TCP-1/cpn60 chaperonin family NJ56_04255 PF00166 Chaperonin 10 Kd subunit NJ56_04260 PF04186 FxsA cytoplasmic membrane protein NJ56_04265 PF10415 Fumarase C C-terminus NJ56_04265 PF00206 Lyase NJ56_04270 PF03605 Anaerobic c4-dicarboxylate membrane transporter NJ56_04275 PF03091 CutA1 divalent ion tolerance protein NJ56_04280 PF11412 Disulphide bond corrector protein DsbC NJ56_04280 PF02683 Cytochrome C biogenesis protein transmembrane region NJ56_04295 PF00589 Phage integrase family NJ56_04305 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NJ56_04325 PF00899 ThiF family NJ56_04325 PF00581 Rhodanese-like domain NJ56_04345 PF00717 Peptidase S24-like NJ56_04360 PF00239 Resolvase, N terminal domain NJ56_04360 PF02796 Helix-turn-helix domain of resolvase NJ56_04375 PF06755 CbtA_toxin of type IV toxin-antitoxin system NJ56_04400 PF03230 Antirestriction protein NJ56_04465 PF00004 ATPase family associated with various cellular activities (AAA) NJ56_04580 PF01131 DNA topoisomerase NJ56_04580 PF01751 Toprim domain NJ56_04615 PF03796 DnaB-like helicase C terminal domain NJ56_04615 PF00772 DnaB-like helicase N terminal domain NJ56_04630 PF00375 Sodium:dicarboxylate symporter family NJ56_04635 PF00501 AMP-binding enzyme NJ56_04635 PF13193 AMP-binding enzyme C-terminal domain NJ56_04635 PF16177 Acetyl-coenzyme A synthetase N-terminus NJ56_04640 PF04341 Protein of unknown function, DUF485 NJ56_04645 PF00474 Sodium:solute symporter family NJ56_04675 PF02142 MGS-like domain NJ56_04675 PF01808 AICARFT/IMPCHase bienzyme NJ56_04680 PF02843 Phosphoribosylglycinamide synthetase, C domain NJ56_04680 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NJ56_04680 PF02844 Phosphoribosylglycinamide synthetase, N domain NJ56_04685 PF07356 Protein of unknown function (DUF1481) NJ56_04690 PF00216 Bacterial DNA-binding protein NJ56_04695 PF04222 Protein of unknown function (DUF416) NJ56_04700 PF04493 Endonuclease V NJ56_04705 PF01208 Uroporphyrinogen decarboxylase (URO-D) NJ56_04710 PF09297 NADH pyrophosphatase zinc ribbon domain NJ56_04710 PF00293 NUDIX domain NJ56_04715 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NJ56_04720 PF13667 ThiC-associated domain NJ56_04720 PF01964 Radical SAM ThiC family NJ56_04725 PF02581 Thiamine monophosphate synthase NJ56_04730 PF00899 ThiF family NJ56_04735 PF02597 ThiS family NJ56_04740 PF05690 Thiazole biosynthesis protein ThiG NJ56_04745 PF04055 Radical SAM superfamily NJ56_04745 PF06968 Biotin and Thiamin Synthesis associated domain NJ56_04750 PF04983 RNA polymerase Rpb1, domain 3 NJ56_04750 PF00623 RNA polymerase Rpb1, domain 2 NJ56_04750 PF04998 RNA polymerase Rpb1, domain 5 NJ56_04750 PF04997 RNA polymerase Rpb1, domain 1 NJ56_04750 PF05000 RNA polymerase Rpb1, domain 4 NJ56_04755 PF04561 RNA polymerase Rpb2, domain 2 NJ56_04755 PF04565 RNA polymerase Rpb2, domain 3 NJ56_04755 PF10385 RNA polymerase beta subunit external 1 domain NJ56_04755 PF00562 RNA polymerase Rpb2, domain 6 NJ56_04755 PF04560 RNA polymerase Rpb2, domain 7 NJ56_04755 PF04563 RNA polymerase beta subunit NJ56_04760 PF16320 Ribosomal protein L7/L12 dimerisation domain NJ56_04760 PF00542 Ribosomal protein L7/L12 C-terminal domain NJ56_04765 PF00466 Ribosomal protein L10 NJ56_04775 PF00687 Ribosomal protein L1p/L10e family NJ56_04780 PF00298 Ribosomal protein L11, RNA binding domain NJ56_04780 PF03946 Ribosomal protein L11, N-terminal domain NJ56_04785 PF00467 KOW motif NJ56_04785 PF02357 Transcription termination factor nusG NJ56_04790 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NJ56_04795 PF03143 Elongation factor Tu C-terminal domain NJ56_04795 PF00009 Elongation factor Tu GTP binding domain NJ56_04795 PF03144 Elongation factor Tu domain 2 NJ56_04820 PF00485 Phosphoribulokinase / Uridine kinase family NJ56_04825 PF03099 Biotin/lipoate A/B protein ligase family NJ56_04825 PF08279 HTH domain NJ56_04825 PF02237 Biotin protein ligase C terminal domain NJ56_04830 PF01565 FAD binding domain NJ56_04830 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NJ56_04855 PF12724 Flavodoxin domain NJ56_04860 PF02386 Cation transport protein NJ56_04865 PF09186 Domain of unknown function (DUF1949) NJ56_04865 PF01205 Uncharacterized protein family UPF0029 NJ56_04870 PF00557 Metallopeptidase family M24 NJ56_04875 PF00378 Enoyl-CoA hydratase/isomerase NJ56_04875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NJ56_04875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NJ56_04880 PF00108 Thiolase, N-terminal domain NJ56_04880 PF02803 Thiolase, C-terminal domain NJ56_04885 PF00175 Oxidoreductase NAD-binding domain NJ56_04885 PF00970 Oxidoreductase FAD-binding domain NJ56_04890 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NJ56_04900 PF02357 Transcription termination factor nusG NJ56_04905 PF00490 Delta-aminolevulinic acid dehydratase NJ56_04910 PF01026 TatD related DNase NJ56_04915 PF00902 Sec-independent protein translocase protein (TatC) NJ56_04925 PF02416 mttA/Hcf106 family NJ56_04930 PF03109 ABC1 family NJ56_04935 PF02036 SCP-2 sterol transfer family NJ56_04940 PF01209 ubiE/COQ5 methyltransferase family NJ56_04945 PF02646 RmuC family NJ56_04950 PF09335 SNARE associated Golgi protein NJ56_04955 PF13722 5TM C-terminal transporter carbon starvation CstA NJ56_04955 PF02554 Carbon starvation protein CstA NJ56_04965 PF01048 Phosphorylase superfamily NJ56_04970 PF01738 Dienelactone hydrolase family NJ56_04975 PF01717 Cobalamin-independent synthase, Catalytic domain NJ56_04975 PF08267 Cobalamin-independent synthase, N-terminal domain NJ56_04980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_04980 PF03466 LysR substrate binding domain NJ56_04985 PF00892 EamA-like transporter family NJ56_04995 PF03009 Glycerophosphoryl diester phosphodiesterase family NJ56_05000 PF00005 ABC transporter NJ56_05000 PF17912 MalK OB fold domain NJ56_05005 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_05010 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_05015 PF13416 Bacterial extracellular solute-binding protein NJ56_05050 PF00005 ABC transporter NJ56_05055 PF12399 Branched-chain amino acid ATP-binding cassette transporter NJ56_05055 PF00005 ABC transporter NJ56_05060 PF11862 Domain of unknown function (DUF3382) NJ56_05060 PF02653 Branched-chain amino acid transport system / permease component NJ56_05065 PF02653 Branched-chain amino acid transport system / permease component NJ56_05070 PF13458 Periplasmic binding protein NJ56_05075 PF12568 Acetyltransferase (GNAT) domain, PanZ NJ56_05080 PF02595 Glycerate kinase family NJ56_05085 PF02447 GntP family permease NJ56_05090 PF17853 GGDEF-like domain NJ56_05090 PF13556 PucR C-terminal helix-turn-helix domain NJ56_05090 PF05651 Putative sugar diacid recognition NJ56_05095 PF04542 Sigma-70 region 2 NJ56_05095 PF04545 Sigma-70, region 4 NJ56_05095 PF00140 Sigma-70 factor, region 1.2 NJ56_05100 PF18075 FtsX extracellular domain NJ56_05100 PF02687 FtsX-like permease family NJ56_05105 PF00005 ABC transporter NJ56_05110 PF00448 SRP54-type protein, GTPase domain NJ56_05110 PF02881 SRP54-type protein, helical bundle domain NJ56_05110 PF00448 SRP54-type protein, GTPase domain NJ56_05110 PF02881 SRP54-type protein, helical bundle domain NJ56_05120 PF06611 Protein of unknown function (DUF1145) NJ56_05135 PF07947 YhhN family NJ56_05140 PF00403 Heavy-metal-associated domain NJ56_05145 PF01206 Sulfurtransferase TusA NJ56_05150 PF02592 Putative vitamin uptake transporter NJ56_05155 PF08786 DcrB NJ56_05160 PF02754 Cysteine-rich domain NJ56_05160 PF13183 4Fe-4S dicluster domain NJ56_05165 PF00890 FAD binding domain NJ56_05170 PF01266 FAD dependent oxidoreductase NJ56_05170 PF04324 BFD-like [2Fe-2S] binding domain NJ56_05180 PF07690 Major Facilitator Superfamily NJ56_05185 PF03009 Glycerophosphoryl diester phosphodiesterase family NJ56_05195 PF12146 Serine aminopeptidase, S33 NJ56_05200 PF01810 LysE type translocator NJ56_05205 PF09382 RQC domain NJ56_05205 PF16124 RecQ zinc-binding NJ56_05205 PF00570 HRDC domain NJ56_05205 PF00270 DEAD/DEAH box helicase NJ56_05205 PF00271 Helicase conserved C-terminal domain NJ56_05210 PF02253 Phospholipase A1 NJ56_05215 PF03061 Thioesterase superfamily NJ56_05220 PF00892 EamA-like transporter family NJ56_05225 PF01544 CorA-like Mg2+ transporter protein NJ56_05235 PF09370 Phosphoenolpyruvate hydrolase-like NJ56_05250 PF13361 UvrD-like helicase C-terminal domain NJ56_05250 PF00580 UvrD/REP helicase N-terminal domain NJ56_05255 PF13419 Haloacid dehalogenase-like hydrolase NJ56_05260 PF00589 Phage integrase family NJ56_05260 PF02899 Phage integrase, N-terminal SAM-like domain NJ56_05265 PF04340 Protein of unknown function, DUF484 NJ56_05270 PF01678 Diaminopimelate epimerase NJ56_05275 PF13627 Prokaryotic lipoprotein-attachment site NJ56_05280 PF01491 Frataxin-like domain NJ56_05285 PF12633 Adenylate cyclase NT domain NJ56_05285 PF01295 Adenylate cyclase, class-I NJ56_05290 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NJ56_05290 PF03900 Porphobilinogen deaminase, C-terminal domain NJ56_05295 PF02602 Uroporphyrinogen-III synthase HemD NJ56_05300 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NJ56_05305 PF07719 Tetratricopeptide repeat NJ56_05305 PF07219 HemY protein N-terminus NJ56_05335 PF00324 Amino acid permease NJ56_05340 PF03808 Glycosyl transferase WecB/TagA/CpsF family NJ56_05345 PF06899 WzyE protein, O-antigen assembly polymerase NJ56_05350 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 NJ56_05355 PF01943 Polysaccharide biosynthesis protein NJ56_05360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NJ56_05370 PF00483 Nucleotidyl transferase NJ56_05375 PF16363 GDP-mannose 4,6 dehydratase NJ56_05380 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NJ56_05380 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NJ56_05380 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NJ56_05385 PF02350 UDP-N-acetylglucosamine 2-epimerase NJ56_05390 PF02706 Chain length determinant protein NJ56_05395 PF00953 Glycosyl transferase family 4 NJ56_05400 PF07497 Rho termination factor, RNA-binding domain NJ56_05400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJ56_05400 PF07498 Rho termination factor, N-terminal domain NJ56_05405 PF00085 Thioredoxin NJ56_05410 PF00271 Helicase conserved C-terminal domain NJ56_05410 PF00270 DEAD/DEAH box helicase NJ56_05415 PF02541 Ppx/GppA phosphatase family NJ56_05420 PF13361 UvrD-like helicase C-terminal domain NJ56_05420 PF00580 UvrD/REP helicase N-terminal domain NJ56_05430 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NJ56_05430 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NJ56_05435 PF03466 LysR substrate binding domain NJ56_05435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_05440 PF18416 N-acetylglucosamine binding protein domain 2 NJ56_05440 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NJ56_05445 PF00291 Pyridoxal-phosphate dependent enzyme NJ56_05445 PF00585 C-terminal regulatory domain of Threonine dehydratase NJ56_05450 PF00920 Dehydratase family NJ56_05460 PF01063 Amino-transferase class IV NJ56_05470 PF00205 Thiamine pyrophosphate enzyme, central domain NJ56_05470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NJ56_05470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJ56_05475 PF08046 IlvGEDA operon leader peptide NJ56_05480 PF13335 Magnesium chelatase, subunit ChlI C-terminal NJ56_05480 PF01078 Magnesium chelatase, subunit ChlI NJ56_05485 PF04219 Protein of unknown function, DUF NJ56_05490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_05490 PF03466 LysR substrate binding domain NJ56_05535 PF01177 Asp/Glu/Hydantoin racemase NJ56_05545 PF05958 tRNA (Uracil-5-)-methyltransferase NJ56_05550 PF07226 Protein of unknown function (DUF1422) NJ56_05555 PF00440 Bacterial regulatory proteins, tetR family NJ56_05560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJ56_05560 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJ56_05565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_05565 PF03466 LysR substrate binding domain NJ56_05570 PF00462 Glutaredoxin NJ56_05570 PF08534 Redoxin NJ56_05575 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJ56_05575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJ56_05595 PF00529 HlyD membrane-fusion protein of T1SS NJ56_05600 PF00664 ABC transporter transmembrane region NJ56_05600 PF00005 ABC transporter NJ56_05610 PF07715 TonB-dependent Receptor Plug Domain NJ56_05610 PF00593 TonB dependent receptor NJ56_05615 PF14698 Argininosuccinate lyase C-terminal NJ56_05615 PF00206 Lyase NJ56_05620 PF00764 Arginosuccinate synthase NJ56_05625 PF00696 Amino acid kinase family NJ56_05630 PF01118 Semialdehyde dehydrogenase, NAD binding domain NJ56_05630 PF02774 Semialdehyde dehydrogenase, dimerisation domain NJ56_05635 PF01546 Peptidase family M20/M25/M40 NJ56_05635 PF07687 Peptidase dimerisation domain NJ56_05640 PF00311 Phosphoenolpyruvate carboxylase NJ56_05650 PF02219 Methylenetetrahydrofolate reductase NJ56_05670 PF00742 Homoserine dehydrogenase NJ56_05670 PF00696 Amino acid kinase family NJ56_05670 PF03447 Homoserine dehydrogenase, NAD binding domain NJ56_05675 PF01053 Cys/Met metabolism PLP-dependent enzyme NJ56_05680 PF01340 Met Apo-repressor, MetJ NJ56_05685 PF01197 Ribosomal protein L31 NJ56_05690 PF00270 DEAD/DEAH box helicase NJ56_05690 PF18074 Primosomal protein N C-terminal domain NJ56_05690 PF17764 3′ DNA-binding domain (3′BD) NJ56_05690 PF00271 Helicase conserved C-terminal domain NJ56_05690 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NJ56_05695 PF00356 Bacterial regulatory proteins, lacI family NJ56_05700 PF05036 Sporulation related domain NJ56_05705 PF00227 Proteasome subunit NJ56_05710 PF00004 ATPase family associated with various cellular activities (AAA) NJ56_05710 PF07724 AAA domain (Cdc48 subfamily) NJ56_05710 PF10431 C-terminal, D2-small domain, of ClpB protein NJ56_05715 PF01040 UbiA prenyltransferase family NJ56_05720 PF03737 Aldolase/RraA NJ56_05725 PF06005 Cell division protein ZapB NJ56_05735 PF00230 Major intrinsic protein NJ56_05740 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NJ56_05740 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NJ56_05745 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NJ56_05750 PF07690 Major Facilitator Superfamily NJ56_05755 PF00175 Oxidoreductase NAD-binding domain NJ56_05755 PF00970 Oxidoreductase FAD-binding domain NJ56_05760 PF05656 Protein of unknown function (DUF805) NJ56_05765 PF07305 Protein of unknown function (DUF1454) NJ56_05770 PF00121 Triosephosphate isomerase NJ56_05780 PF00365 Phosphofructokinase NJ56_05785 PF16916 Dimerisation domain of Zinc Transporter NJ56_05785 PF01545 Cation efflux family NJ56_05790 PF07813 LTXXQ motif family protein NJ56_05795 PF00486 Transcriptional regulatory protein, C terminal NJ56_05795 PF00072 Response regulator receiver domain NJ56_05800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_05800 PF00512 His Kinase A (phospho-acceptor) domain NJ56_05800 PF00672 HAMP domain NJ56_05800 PF16527 Two-component sensor protein CpxA, periplasmic domain NJ56_05805 PF00588 SpoU rRNA Methylase family NJ56_05810 PF00132 Bacterial transferase hexapeptide (six repeats) NJ56_05810 PF06426 Serine acetyltransferase, N-terminal NJ56_05815 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NJ56_05815 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NJ56_05820 PF02556 Preprotein translocase subunit SecB NJ56_05825 PF00462 Glutaredoxin NJ56_05830 PF00581 Rhodanese-like domain NJ56_05835 PF01676 Metalloenzyme superfamily NJ56_05835 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NJ56_05840 PF01551 Peptidase family M23 NJ56_05845 PF04748 Divergent polysaccharide deacetylase NJ56_05850 PF08240 Alcohol dehydrogenase GroES-like domain NJ56_05850 PF00107 Zinc-binding dehydrogenase NJ56_05855 PF00155 Aminotransferase class I and II NJ56_05860 PF01370 NAD dependent epimerase/dehydratase family NJ56_05865 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NJ56_05870 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NJ56_05875 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NJ56_05880 PF00535 Glycosyl transferase family 2 NJ56_05885 PF01467 Cytidylyltransferase-like NJ56_05890 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NJ56_05890 PF06827 Zinc finger found in FPG and IleRS NJ56_05890 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NJ56_05895 PF00471 Ribosomal protein L33 NJ56_05900 PF00830 Ribosomal L28 family NJ56_05910 PF04002 RadC-like JAB domain NJ56_05915 PF04127 DNA / pantothenate metabolism flavoprotein NJ56_05915 PF02441 Flavoprotein NJ56_05920 PF00692 dUTPase NJ56_05925 PF00440 Bacterial regulatory proteins, tetR family NJ56_05930 PF00156 Phosphoribosyl transferase domain NJ56_05935 PF01138 3' exoribonuclease family, domain 1 NJ56_05935 PF03725 3' exoribonuclease family, domain 2 NJ56_05940 PF08340 Domain of unknown function (DUF1732) NJ56_05940 PF03755 YicC-like family, N-terminal region NJ56_05950 PF03466 LysR substrate binding domain NJ56_05950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_05955 PF00563 EAL domain NJ56_05955 PF00990 Diguanylate cyclase, GGDEF domain NJ56_05955 PF13426 PAS domain NJ56_05960 PF00378 Enoyl-CoA hydratase/isomerase NJ56_05965 PF07662 Na+ dependent nucleoside transporter C-terminus NJ56_05965 PF01773 Na+ dependent nucleoside transporter N-terminus NJ56_05965 PF07670 Nucleoside recognition NJ56_05980 PF03458 UPF0126 domain NJ56_05985 PF01653 NAD-dependent DNA ligase adenylation domain NJ56_05985 PF03120 NAD-dependent DNA ligase OB-fold domain NJ56_05990 PF00625 Guanylate kinase NJ56_05995 PF01192 RNA polymerase Rpb6 NJ56_06000 PF13291 ACT domain NJ56_06000 PF04607 Region found in RelA / SpoT proteins NJ56_06000 PF02824 TGS domain NJ56_06005 PF00588 SpoU rRNA Methylase family NJ56_06005 PF12105 SpoU, rRNA methylase, C-terminal NJ56_06010 PF17191 RecG wedge domain NJ56_06010 PF00270 DEAD/DEAH box helicase NJ56_06010 PF00271 Helicase conserved C-terminal domain NJ56_06015 PF03616 Sodium/glutamate symporter NJ56_06020 PF00860 Permease family NJ56_06025 PF05170 AsmA family NJ56_06030 PF00583 Acetyltransferase (GNAT) family NJ56_06030 PF09500 Putative thioesterase (yiiD_Cterm) NJ56_06035 PF02580 D-Tyr-tRNA(Tyr) deacylase NJ56_06040 PF03631 Virulence factor BrkB NJ56_06045 PF13419 Haloacid dehalogenase-like hydrolase NJ56_06055 PF00120 Glutamine synthetase, catalytic domain NJ56_06055 PF03951 Glutamine synthetase, beta-Grasp domain NJ56_06065 PF00989 PAS fold NJ56_06065 PF00512 His Kinase A (phospho-acceptor) domain NJ56_06065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_06070 PF00158 Sigma-54 interaction domain NJ56_06070 PF02954 Bacterial regulatory protein, Fis family NJ56_06070 PF00072 Response regulator receiver domain NJ56_06075 PF04055 Radical SAM superfamily NJ56_06075 PF06969 HemN C-terminal domain NJ56_06085 PF04220 Der GTPase activator (YihI) NJ56_06090 PF01926 50S ribosome-binding GTPase NJ56_06095 PF00476 DNA polymerase family A NJ56_06095 PF01367 5'-3' exonuclease, C-terminal SAM fold NJ56_06095 PF01612 3'-5' exonuclease NJ56_06095 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NJ56_06100 PF01323 DSBA-like thioredoxin domain NJ56_06105 PF01636 Phosphotransferase enzyme family NJ56_06110 PF06288 Protein of unknown function (DUF1040) NJ56_06115 PF12804 MobA-like NTP transferase domain NJ56_06120 PF03205 Molybdopterin guanine dinucleotide synthesis protein B NJ56_06145 PF07729 FCD domain NJ56_06145 PF00392 Bacterial regulatory proteins, gntR family NJ56_06150 PF00356 Bacterial regulatory proteins, lacI family NJ56_06155 PF00294 pfkB family carbohydrate kinase NJ56_06160 PF13407 Periplasmic binding protein domain NJ56_06165 PF02653 Branched-chain amino acid transport system / permease component NJ56_06170 PF00005 ABC transporter NJ56_06175 PF05025 RbsD / FucU transport protein family NJ56_06180 PF02705 K+ potassium transporter NJ56_06185 PF17868 AAA lid domain NJ56_06185 PF07728 AAA domain (dynein-related subfamily) NJ56_06185 PF12592 Protein of unknown function (DUF3763) NJ56_06190 PF05762 VWA domain containing CoxE-like protein NJ56_06200 PF03590 Aspartate-ammonia ligase NJ56_06205 PF01037 Lrp/AsnC ligand binding domain NJ56_06210 PF00258 Flavodoxin NJ56_06220 PF01134 Glucose inhibited division protein A NJ56_06220 PF13932 GidA associated domain NJ56_06225 PF02527 rRNA small subunit methyltransferase G NJ56_06230 PF03899 ATP synthase I chain NJ56_06235 PF00119 ATP synthase A chain NJ56_06240 PF00137 ATP synthase subunit C NJ56_06245 PF00430 ATP synthase B/B' CF(0) NJ56_06250 PF00213 ATP synthase delta (OSCP) subunit NJ56_06255 PF02874 ATP synthase alpha/beta family, beta-barrel domain NJ56_06255 PF00306 ATP synthase alpha/beta chain, C terminal domain NJ56_06255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJ56_06260 PF00231 ATP synthase NJ56_06270 PF02874 ATP synthase alpha/beta family, beta-barrel domain NJ56_06270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJ56_06275 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NJ56_06275 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NJ56_06280 PF00132 Bacterial transferase hexapeptide (six repeats) NJ56_06280 PF12804 MobA-like NTP transferase domain NJ56_06285 PF01380 SIS domain NJ56_06290 PF12849 PBP superfamily domain NJ56_06295 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_06300 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_06305 PF00005 ABC transporter NJ56_06310 PF01895 PhoU domain NJ56_06315 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJ56_06320 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_06325 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_06330 PF00860 Permease family NJ56_06335 PF02203 Tar ligand binding domain homologue NJ56_06335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJ56_06335 PF00672 HAMP domain NJ56_06345 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NJ56_06345 PF02753 Pili assembly chaperone PapD, C-terminal domain NJ56_06350 PF00577 Outer membrane usher protein NJ56_06350 PF13954 PapC N-terminal domain NJ56_06350 PF13953 PapC C-terminal domain NJ56_06360 PF01926 50S ribosome-binding GTPase NJ56_06360 PF12631 MnmE helical domain NJ56_06360 PF10396 GTP-binding protein TrmE N-terminus NJ56_06365 PF02096 60Kd inner membrane protein NJ56_06365 PF14849 YidC periplasmic domain NJ56_06370 PF01809 Putative membrane protein insertion efficiency factor NJ56_06375 PF00825 Ribonuclease P NJ56_06380 PF00468 Ribosomal protein L34 NJ56_06390 PF08299 Bacterial dnaA protein helix-turn-helix NJ56_06390 PF00308 Bacterial dnaA protein NJ56_06390 PF11638 DnaA N-terminal domain NJ56_06395 PF02767 DNA polymerase III beta subunit, central domain NJ56_06395 PF02768 DNA polymerase III beta subunit, C-terminal domain NJ56_06395 PF00712 DNA polymerase III beta subunit, N-terminal domain NJ56_06400 PF02463 RecF/RecN/SMC N terminal domain NJ56_06405 PF00986 DNA gyrase B subunit, carboxyl terminus NJ56_06405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_06405 PF00204 DNA gyrase B NJ56_06405 PF01751 Toprim domain NJ56_06405 PF18053 DNA gyrase B subunit insert domain NJ56_06415 PF07676 WD40-like Beta Propeller Repeat NJ56_06415 PF12566 Protein of unknown function (DUF3748) NJ56_06420 PF07119 Protein of unknown function (DUF1375) NJ56_06425 PF00011 Hsp20/alpha crystallin family NJ56_06430 PF00011 Hsp20/alpha crystallin family NJ56_06435 PF02080 TrkA-C domain NJ56_06435 PF06826 Predicted Permease Membrane Region NJ56_06440 PF00155 Aminotransferase class I and II NJ56_06445 PF00691 OmpA family NJ56_06445 PF13488 Glycine zipper NJ56_06465 PF03352 Methyladenine glycosylase NJ56_06475 PF02091 Glycyl-tRNA synthetase alpha subunit NJ56_06480 PF02092 Glycyl-tRNA synthetase beta subunit NJ56_06480 PF05746 DALR anticodon binding domain NJ56_06485 PF11254 Protein of unknown function (DUF3053) NJ56_06515 PF02378 Phosphotransferase system, EIIC NJ56_06515 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NJ56_06515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NJ56_06520 PF01232 Mannitol dehydrogenase Rossmann domain NJ56_06520 PF08125 Mannitol dehydrogenase C-terminal domain NJ56_06525 PF05068 Mannitol repressor NJ56_06530 PF10928 Protein of unknown function (DUF2810) NJ56_06535 PF03475 3-alpha domain NJ56_06535 PF03473 MOSC domain NJ56_06540 PF02203 Tar ligand binding domain homologue NJ56_06540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJ56_06540 PF00672 HAMP domain NJ56_06545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NJ56_06545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NJ56_06550 PF02634 FdhD/NarQ family NJ56_06555 PF01568 Molydopterin dinucleotide binding domain NJ56_06555 PF00384 Molybdopterin oxidoreductase NJ56_06555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NJ56_06560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NJ56_06560 PF00384 Molybdopterin oxidoreductase NJ56_06560 PF01568 Molydopterin dinucleotide binding domain NJ56_06565 PF09163 Formate dehydrogenase N, transmembrane NJ56_06565 PF13247 4Fe-4S dicluster domain NJ56_06570 PF01292 Prokaryotic cytochrome b561 NJ56_06575 PF04216 Protein involved in formate dehydrogenase formation NJ56_06580 PF03841 L-seryl-tRNA selenium transferase NJ56_06580 PF12390 Selenocysteine synthase N terminal NJ56_06585 PF00009 Elongation factor Tu GTP binding domain NJ56_06585 PF09107 Elongation factor SelB, winged helix NJ56_06585 PF03144 Elongation factor Tu domain 2 NJ56_06585 PF09106 Elongation factor SelB, winged helix NJ56_06590 PF01427 D-ala-D-ala dipeptidase NJ56_06595 PF07690 Major Facilitator Superfamily NJ56_06600 PF01757 Acyltransferase family NJ56_06605 PF13356 Arm DNA-binding domain NJ56_06605 PF00589 Phage integrase family NJ56_06625 PF17391 Urocanase N-terminal domain NJ56_06625 PF17392 Urocanase C-terminal domain NJ56_06625 PF01175 Urocanase Rossmann-like domain NJ56_06630 PF00221 Aromatic amino acid lyase NJ56_06635 PF00324 Amino acid permease NJ56_06645 PF12146 Serine aminopeptidase, S33 NJ56_06650 PF00884 Sulfatase NJ56_06650 PF08019 Phosphoethanolamine transferase EptA/EptB NJ56_06655 PF00196 Bacterial regulatory proteins, luxR family NJ56_06655 PF00072 Response regulator receiver domain NJ56_06660 PF07730 Histidine kinase NJ56_06660 PF05231 MASE1 NJ56_06660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_06665 PF07690 Major Facilitator Superfamily NJ56_06675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJ56_06680 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_06685 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_06685 PF12911 N-terminal TM domain of oligopeptide transport permease C NJ56_06690 PF00005 ABC transporter NJ56_06690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJ56_06695 PF00005 ABC transporter NJ56_06695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJ56_06700 PF11658 Cellulose biosynthesis protein BcsG NJ56_06705 PF11120 Cellulose biosynthesis protein BcsF NJ56_06710 PF10995 Cellulose biosynthesis GIL NJ56_06720 PF06564 Cellulose biosynthesis protein BcsQ NJ56_06725 PF00535 Glycosyl transferase family 2 NJ56_06725 PF03552 Cellulose synthase NJ56_06725 PF07238 PilZ domain NJ56_06730 PF03170 Bacterial cellulose synthase subunit NJ56_06735 PF01270 Glycosyl hydrolases family 8 NJ56_06740 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) NJ56_06745 PF17154 Gammaproteobacterial periplasmic sensor domain NJ56_06745 PF00990 Diguanylate cyclase, GGDEF domain NJ56_06745 PF00563 EAL domain NJ56_06745 PF00672 HAMP domain NJ56_06750 PF00375 Sodium:dicarboxylate symporter family NJ56_06755 PF00675 Insulinase (Peptidase family M16) NJ56_06755 PF05193 Peptidase M16 inactive domain NJ56_06760 PF00294 pfkB family carbohydrate kinase NJ56_06765 PF01361 Tautomerase enzyme NJ56_06770 PF00563 EAL domain NJ56_06775 PF02611 CDP-diacylglycerol pyrophosphatase NJ56_06780 PF03631 Virulence factor BrkB NJ56_06785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_06785 PF03466 LysR substrate binding domain NJ56_06790 PF00375 Sodium:dicarboxylate symporter family NJ56_06795 PF01053 Cys/Met metabolism PLP-dependent enzyme NJ56_06800 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJ56_06800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJ56_06805 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NJ56_06810 PF01432 Peptidase family M3 NJ56_06815 PF04445 Putative SAM-dependent methyltransferase NJ56_06820 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NJ56_06820 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NJ56_06825 PF00582 Universal stress protein family NJ56_06830 PF10625 Universal stress protein B (UspB) NJ56_06835 PF01384 Phosphate transporter family NJ56_06845 PF01810 LysE type translocator NJ56_06850 PF00583 Acetyltransferase (GNAT) family NJ56_06855 PF17954 Quercetinase C-terminal cupin domain NJ56_06855 PF02678 Pirin NJ56_06860 PF00356 Bacterial regulatory proteins, lacI family NJ56_06860 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NJ56_06865 PF02447 GntP family permease NJ56_06885 PF01202 Shikimate kinase NJ56_06890 PF01914 MarC family integral membrane protein NJ56_06895 PF01118 Semialdehyde dehydrogenase, NAD binding domain NJ56_06895 PF02774 Semialdehyde dehydrogenase, dimerisation domain NJ56_06900 PF07694 5TMR of 5TMR-LYT NJ56_06900 PF06580 Histidine kinase NJ56_06905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NJ56_06905 PF02806 Alpha amylase, C-terminal all-beta domain NJ56_06905 PF00128 Alpha amylase, catalytic domain NJ56_06910 PF00128 Alpha amylase, catalytic domain NJ56_06910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NJ56_06910 PF18390 Glycogen debranching enzyme C-terminal domain NJ56_06915 PF00483 Nucleotidyl transferase NJ56_06920 PF08323 Starch synthase catalytic domain NJ56_06920 PF00534 Glycosyl transferases group 1 NJ56_06925 PF00343 Carbohydrate phosphorylase NJ56_06930 PF01266 FAD dependent oxidoreductase NJ56_06930 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NJ56_06935 PF08220 DeoR-like helix-turn-helix domain NJ56_06935 PF00455 DeoR C terminal sensor domain NJ56_06940 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NJ56_06940 PF01694 Rhomboid family NJ56_06945 PF00581 Rhodanese-like domain NJ56_06950 PF00196 Bacterial regulatory proteins, luxR family NJ56_06950 PF17874 MalT-like TPR region NJ56_06955 PF00343 Carbohydrate phosphorylase NJ56_06960 PF02446 4-alpha-glucanotransferase NJ56_06965 PF01106 NifU-like domain NJ56_06965 PF01521 Iron-sulphur cluster biosynthesis NJ56_06970 PF00156 Phosphoribosyl transferase domain NJ56_06975 PF00561 alpha/beta hydrolase fold NJ56_06985 PF09012 FeoC like transcriptional regulator NJ56_06990 PF02421 Ferrous iron transport protein B NJ56_06990 PF07664 Ferrous iron transport protein B C terminus NJ56_06990 PF17910 FeoB cytosolic helical domain NJ56_06990 PF07670 Nucleoside recognition NJ56_06995 PF04023 FeoA domain NJ56_07000 PF17674 HHH domain NJ56_07000 PF16921 Tex protein YqgF-like domain NJ56_07000 PF00575 S1 RNA binding domain NJ56_07000 PF09371 Tex-like protein N-terminal domain NJ56_07025 PF03449 Transcription elongation factor, N-terminal NJ56_07025 PF01272 Transcription elongation factor, GreA/GreB, C-term NJ56_07030 PF00072 Response regulator receiver domain NJ56_07030 PF00486 Transcriptional regulatory protein, C terminal NJ56_07035 PF00672 HAMP domain NJ56_07035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_07035 PF00512 His Kinase A (phospho-acceptor) domain NJ56_07040 PF01293 Phosphoenolpyruvate carboxykinase NJ56_07045 PF01430 Hsp33 protein NJ56_07050 PF01479 S4 domain NJ56_07055 PF13419 Haloacid dehalogenase-like hydrolase NJ56_07060 PF07095 Intracellular growth attenuator protein IgaA NJ56_07065 PF00293 NUDIX domain NJ56_07070 PF00905 Penicillin binding protein transpeptidase domain NJ56_07070 PF17092 Penicillin-binding protein OB-like domain NJ56_07070 PF00912 Transglycosylase NJ56_07095 PF03958 Bacterial type II/III secretion system short domain NJ56_07095 PF00263 Bacterial type II and III secretion system protein NJ56_07100 PF01202 Shikimate kinase NJ56_07105 PF01761 3-dehydroquinate synthase NJ56_07110 PF05036 Sporulation related domain NJ56_07115 PF02086 D12 class N6 adenine-specific DNA methyltransferase NJ56_07120 PF00834 Ribulose-phosphate 3 epimerase family NJ56_07125 PF13419 Haloacid dehalogenase-like hydrolase NJ56_07130 PF00579 tRNA synthetases class I (W and Y) NJ56_07135 PF10414 Sirohaem synthase dimerisation region NJ56_07135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NJ56_07135 PF14824 Sirohaem biosynthesis protein central NJ56_07140 PF01226 Formate/nitrite transporter NJ56_07145 PF13806 Rieske-like [2Fe-2S] domain NJ56_07150 PF18267 Rubredoxin NAD+ reductase C-terminal domain NJ56_07150 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NJ56_07150 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NJ56_07150 PF04324 BFD-like [2Fe-2S] binding domain NJ56_07150 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJ56_07155 PF07969 Amidohydrolase family NJ56_07160 PF07690 Major Facilitator Superfamily NJ56_07175 PF00356 Bacterial regulatory proteins, lacI family NJ56_07180 PF02056 Family 4 glycosyl hydrolase NJ56_07180 PF11975 Family 4 glycosyl hydrolase C-terminal domain NJ56_07185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NJ56_07190 PF00117 Glutamine amidotransferase class-I NJ56_07195 PF00202 Aminotransferase class-III NJ56_07200 PF12805 FUSC-like inner membrane protein yccS NJ56_07205 PF13545 Crp-like helix-turn-helix domain NJ56_07205 PF00027 Cyclic nucleotide-binding domain NJ56_07210 PF02566 OsmC-like protein NJ56_07230 PF00156 Phosphoribosyl transferase domain NJ56_07235 PF00291 Pyridoxal-phosphate dependent enzyme NJ56_07240 PF00485 Phosphoribulokinase / Uridine kinase family NJ56_07245 PF06794 Uncharacterised protein family (UPF0270) NJ56_07250 PF00561 alpha/beta hydrolase fold NJ56_07255 PF01810 LysE type translocator NJ56_07260 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NJ56_07265 PF00535 Glycosyl transferase family 2 NJ56_07270 PF00005 ABC transporter NJ56_07270 PF12848 ABC transporter NJ56_07275 PF02525 Flavodoxin-like fold NJ56_07280 PF00999 Sodium/hydrogen exchanger family NJ56_07280 PF02254 TrkA-N domain NJ56_07285 PF09526 Probable metal-binding protein (DUF2387) NJ56_07290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJ56_07295 PF04102 SlyX NJ56_07300 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NJ56_07300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJ56_07305 PF13309 HTH domain NJ56_07305 PF08348 YheO-like PAS domain NJ56_07310 PF02635 DsrE/DsrF-like family NJ56_07315 PF02635 DsrE/DsrF-like family NJ56_07320 PF04077 DsrH like protein NJ56_07325 PF00164 Ribosomal protein S12/S23 NJ56_07330 PF00177 Ribosomal protein S7p/S5e NJ56_07335 PF00009 Elongation factor Tu GTP binding domain NJ56_07335 PF03764 Elongation factor G, domain IV NJ56_07335 PF14492 Elongation Factor G, domain II NJ56_07335 PF03144 Elongation factor Tu domain 2 NJ56_07335 PF00679 Elongation factor G C-terminus NJ56_07345 PF03144 Elongation factor Tu domain 2 NJ56_07345 PF03143 Elongation factor Tu C-terminal domain NJ56_07345 PF00009 Elongation factor Tu GTP binding domain NJ56_07350 PF04324 BFD-like [2Fe-2S] binding domain NJ56_07355 PF00210 Ferritin-like domain NJ56_07360 PF00338 Ribosomal protein S10p/S20e NJ56_07365 PF00297 Ribosomal protein L3 NJ56_07370 PF00573 Ribosomal protein L4/L1 family NJ56_07375 PF00276 Ribosomal protein L23 NJ56_07380 PF00181 Ribosomal Proteins L2, RNA binding domain NJ56_07380 PF03947 Ribosomal Proteins L2, C-terminal domain NJ56_07385 PF00203 Ribosomal protein S19 NJ56_07390 PF00237 Ribosomal protein L22p/L17e NJ56_07395 PF07650 KH domain NJ56_07395 PF00189 Ribosomal protein S3, C-terminal domain NJ56_07400 PF00252 Ribosomal protein L16p/L10e NJ56_07405 PF00831 Ribosomal L29 protein NJ56_07410 PF00366 Ribosomal protein S17 NJ56_07415 PF00238 Ribosomal protein L14p/L23e NJ56_07420 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NJ56_07420 PF00467 KOW motif NJ56_07425 PF00281 Ribosomal protein L5 NJ56_07425 PF00673 ribosomal L5P family C-terminus NJ56_07430 PF00253 Ribosomal protein S14p/S29e NJ56_07435 PF00410 Ribosomal protein S8 NJ56_07440 PF00347 Ribosomal protein L6 NJ56_07445 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NJ56_07450 PF03719 Ribosomal protein S5, C-terminal domain NJ56_07450 PF00333 Ribosomal protein S5, N-terminal domain NJ56_07455 PF00327 Ribosomal protein L30p/L7e NJ56_07460 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NJ56_07465 PF00344 SecY translocase NJ56_07470 PF00444 Ribosomal protein L36 NJ56_07475 PF00416 Ribosomal protein S13/S18 NJ56_07480 PF00411 Ribosomal protein S11 NJ56_07485 PF00163 Ribosomal protein S4/S9 N-terminal domain NJ56_07485 PF01479 S4 domain NJ56_07490 PF01000 RNA polymerase Rpb3/RpoA insert domain NJ56_07490 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NJ56_07490 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NJ56_07495 PF01196 Ribosomal protein L17 NJ56_07500 PF13411 MerR HTH family regulatory protein NJ56_07505 PF03889 Alternative ribosome-rescue factor A NJ56_07510 PF01741 Large-conductance mechanosensitive channel, MscL NJ56_07515 PF02254 TrkA-N domain NJ56_07515 PF02080 TrkA-C domain NJ56_07520 PF01029 NusB family NJ56_07520 PF01189 16S rRNA methyltransferase RsmB/F NJ56_07525 PF00551 Formyl transferase NJ56_07525 PF02911 Formyl transferase, C-terminal domain NJ56_07530 PF01327 Polypeptide deformylase NJ56_07535 PF17782 DprA winged helix domain NJ56_07535 PF02481 DNA recombination-mediator protein A NJ56_07540 PF04361 Protein of unknown function (DUF494) NJ56_07545 PF01396 Topoisomerase DNA binding C4 zinc finger NJ56_07550 PF01300 Telomere recombination NJ56_07555 PF08501 Shikimate dehydrogenase substrate binding domain NJ56_07555 PF01488 Shikimate / quinate 5-dehydrogenase NJ56_07555 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NJ56_07560 PF00132 Bacterial transferase hexapeptide (six repeats) NJ56_07600 PF04204 Homoserine O-succinyltransferase NJ56_07605 PF01274 Malate synthase NJ56_07610 PF00463 Isocitrate lyase family NJ56_07615 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NJ56_07620 PF09339 IclR helix-turn-helix domain NJ56_07620 PF01614 Bacterial transcriptional regulator NJ56_07625 PF00809 Pterin binding enzyme NJ56_07625 PF02310 B12 binding domain NJ56_07625 PF02607 B12 binding domain NJ56_07625 PF02965 Vitamin B12 dependent methionine synthase, activation domain NJ56_07625 PF02574 Homocysteine S-methyltransferase NJ56_07640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_07640 PF03466 LysR substrate binding domain NJ56_07645 PF03400 IS1 transposase NJ56_07725 PF00004 ATPase family associated with various cellular activities (AAA) NJ56_07725 PF01434 Peptidase family M41 NJ56_07725 PF17862 AAA+ lid domain NJ56_07735 PF04488 Glycosyltransferase sugar-binding region containing DXD motif NJ56_07745 PF02369 Bacterial Ig-like domain (group 1) NJ56_07745 PF11924 Inverse autotransporter, beta-domain NJ56_07745 PF07979 Intimin C-type lectin domain NJ56_07745 PF09134 Invasin, domain 3 NJ56_07755 PF00872 Transposase, Mutator family NJ56_07760 PF13332 Hemagglutinin repeat NJ56_07760 PF05860 haemagglutination activity domain NJ56_07765 PF08479 POTRA domain, ShlB-type NJ56_07765 PF17287 POTRA domain NJ56_07765 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NJ56_07770 PF01842 ACT domain NJ56_07770 PF00696 Amino acid kinase family NJ56_07775 PF00342 Phosphoglucose isomerase NJ56_07780 PF06146 Phosphate-starvation-inducible E NJ56_07785 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_07790 PF14785 Maltose transport system permease protein MalF P2 domain NJ56_07790 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_07795 PF01547 Bacterial extracellular solute-binding protein NJ56_07805 PF17912 MalK OB fold domain NJ56_07805 PF00005 ABC transporter NJ56_07810 PF02264 LamB porin NJ56_07815 PF07148 Maltose operon periplasmic protein precursor (MalM) NJ56_07820 PF04345 Chorismate lyase NJ56_07825 PF01040 UbiA prenyltransferase family NJ56_07830 PF01553 Acyltransferase NJ56_07835 PF01219 Prokaryotic diacylglycerol kinase NJ56_07840 PF01726 LexA DNA binding domain NJ56_07840 PF00717 Peptidase S24-like NJ56_07845 PF01475 Ferric uptake regulator family NJ56_07850 PF01207 Dihydrouridine synthase (Dus) NJ56_07855 PF09583 Phage shock protein G (Phageshock_PspG) NJ56_07860 PF00107 Zinc-binding dehydrogenase NJ56_07860 PF08240 Alcohol dehydrogenase GroES-like domain NJ56_07865 PF03796 DnaB-like helicase C terminal domain NJ56_07865 PF00772 DnaB-like helicase N terminal domain NJ56_07870 PF00842 Alanine racemase, C-terminal domain NJ56_07870 PF01168 Alanine racemase, N-terminal domain NJ56_07875 PF00155 Aminotransferase class I and II NJ56_07880 PF04237 YjbR NJ56_07885 PF00005 ABC transporter NJ56_07885 PF17755 UvrA DNA-binding domain NJ56_07885 PF17760 UvrA interaction domain NJ56_07890 PF00436 Single-strand binding protein family NJ56_07900 PF00860 Permease family NJ56_07905 PF00999 Sodium/hydrogen exchanger family NJ56_07910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_07910 PF03466 LysR substrate binding domain NJ56_07915 PF03788 LrgA family NJ56_07920 PF04172 LrgB-like family NJ56_07925 PF00484 Carbonic anhydrase NJ56_07930 PF03279 Bacterial lipid A biosynthesis acyltransferase NJ56_07940 PF02954 Bacterial regulatory protein, Fis family NJ56_07945 PF01207 Dihydrouridine synthase (Dus) NJ56_07955 PF00474 Sodium:solute symporter family NJ56_07960 PF06196 Protein of unknown function (DUF997) NJ56_07965 PF02785 Biotin carboxylase C-terminal domain NJ56_07965 PF00289 Biotin carboxylase, N-terminal domain NJ56_07965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NJ56_07970 PF00364 Biotin-requiring enzyme NJ56_07975 PF01220 Dehydroquinase class II NJ56_07980 PF01794 Ferric reductase like transmembrane component NJ56_07985 PF00174 Oxidoreductase molybdopterin binding domain NJ56_07990 PF00107 Zinc-binding dehydrogenase NJ56_07990 PF08240 Alcohol dehydrogenase GroES-like domain NJ56_07995 PF00990 Diguanylate cyclase, GGDEF domain NJ56_07995 PF17157 Gammaproteobacterial periplasmic sensor domain NJ56_07995 PF00563 EAL domain NJ56_08005 PF04085 rod shape-determining protein MreC NJ56_08010 PF04093 rod shape-determining protein MreD NJ56_08015 PF02545 Maf-like protein NJ56_08020 PF10150 Ribonuclease E/G family NJ56_08020 PF00575 S1 RNA binding domain NJ56_08025 PF13502 AsmA-like C-terminal region NJ56_08025 PF13116 Protein of unknown function NJ56_08030 PF00795 Carbon-nitrogen hydrolase NJ56_08035 PF01523 Putative modulator of DNA gyrase NJ56_08040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_08040 PF03466 LysR substrate binding domain NJ56_08045 PF07869 Protein of unknown function (DUF1656) NJ56_08050 PF13533 Biotin-lipoyl like NJ56_08055 PF04632 Fusaric acid resistance protein family NJ56_08060 PF00171 Aldehyde dehydrogenase family NJ56_08065 PF00545 ribonuclease NJ56_08070 PF01337 Barstar (barnase inhibitor) NJ56_08075 PF04751 Protein of unknown function (DUF615) NJ56_08080 PF01523 Putative modulator of DNA gyrase NJ56_08085 PF07361 Cytochrome b562 NJ56_08090 PF14760 Rnk N-terminus NJ56_08090 PF01272 Transcription elongation factor, GreA/GreB, C-term NJ56_08105 PF00690 Cation transporter/ATPase, N-terminus NJ56_08105 PF00689 Cation transporting ATPase, C-terminus NJ56_08110 PF00356 Bacterial regulatory proteins, lacI family NJ56_08115 PF02378 Phosphotransferase system, EIIC NJ56_08115 PF00367 phosphotransferase system, EIIB NJ56_08120 PF11941 Domain of unknown function (DUF3459) NJ56_08120 PF00128 Alpha amylase, catalytic domain NJ56_08125 PF01042 Endoribonuclease L-PSP NJ56_08130 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NJ56_08130 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NJ56_08135 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NJ56_08135 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NJ56_08140 PF00381 PTS HPr component phosphorylation site NJ56_08145 PF03668 P-loop ATPase protein family NJ56_08150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NJ56_08155 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NJ56_08160 PF04552 Sigma-54, DNA binding domain NJ56_08160 PF04963 Sigma-54 factor, core binding domain NJ56_08160 PF00309 Sigma-54 factor, Activator interacting domain (AID) NJ56_08165 PF00005 ABC transporter NJ56_08165 PF12399 Branched-chain amino acid ATP-binding cassette transporter NJ56_08170 PF03968 OstA-like protein NJ56_08175 PF06835 Lipopolysaccharide-assembly, LptC-related NJ56_08185 PF00571 CBS domain NJ56_08185 PF01380 SIS domain NJ56_08190 PF01699 Sodium/calcium exchanger protein NJ56_08195 PF00005 ABC transporter NJ56_08200 PF02405 Permease MlaE NJ56_08205 PF02470 MlaD protein NJ56_08210 PF05494 MlaC protein NJ56_08215 PF13466 STAS domain NJ56_08220 PF01722 BolA-like protein NJ56_08225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NJ56_08230 PF13180 PDZ domain NJ56_08235 PF13180 PDZ domain NJ56_08235 PF00595 PDZ domain NJ56_08240 PF06295 Protein of unknown function (DUF1043) NJ56_08245 PF03969 AFG1-like ATPase NJ56_08255 PF00572 Ribosomal protein L13 NJ56_08260 PF00380 Ribosomal protein S9/S16 NJ56_08265 PF00043 Glutathione S-transferase, C-terminal domain NJ56_08265 PF02798 Glutathione S-transferase, N-terminal domain NJ56_08270 PF04386 Stringent starvation protein B NJ56_08280 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NJ56_08280 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJ56_08285 PF01645 Conserved region in glutamate synthase NJ56_08285 PF00310 Glutamine amidotransferases class-II NJ56_08285 PF04898 Glutamate synthase central domain NJ56_08285 PF01493 GXGXG motif NJ56_08290 PF16199 Radical_SAM C-terminal domain NJ56_08290 PF04055 Radical SAM superfamily NJ56_08295 PF00072 Response regulator receiver domain NJ56_08295 PF18415 Histidine kinase receptor ArcB trans-membrane domain NJ56_08295 PF00989 PAS fold NJ56_08295 PF00512 His Kinase A (phospho-acceptor) domain NJ56_08295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_08295 PF01627 Hpt domain NJ56_08310 PF00912 Transglycosylase NJ56_08315 PF04972 BON domain NJ56_08320 PF13580 SIS domain NJ56_08325 PF02021 Uncharacterised protein family UPF0102 NJ56_08330 PF04348 LppC putative lipoprotein NJ56_08335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NJ56_08345 PF02678 Pirin NJ56_08345 PF17954 Quercetinase C-terminal cupin domain NJ56_08350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_08350 PF03466 LysR substrate binding domain NJ56_08355 PF07681 DoxX NJ56_08360 PF13997 YqjK-like protein NJ56_08365 PF07332 Putative Actinobacterial Holin-X, holin superfamily III NJ56_08370 PF05957 Bacterial protein of unknown function (DUF883) NJ56_08380 PF13721 SecD export protein N-terminal TM region NJ56_08385 PF09335 SNARE associated Golgi protein NJ56_08395 PF07729 FCD domain NJ56_08395 PF00392 Bacterial regulatory proteins, gntR family NJ56_08400 PF07690 Major Facilitator Superfamily NJ56_08405 PF02614 Glucuronate isomerase NJ56_08410 PF01232 Mannitol dehydrogenase Rossmann domain NJ56_08410 PF08125 Mannitol dehydrogenase C-terminal domain NJ56_08415 PF08666 SAF domain NJ56_08415 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NJ56_08420 PF10688 Bacterial inner membrane protein NJ56_08425 PF00375 Sodium:dicarboxylate symporter family NJ56_08430 PF03741 Integral membrane protein TerC family NJ56_08435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NJ56_08440 PF01863 Protein of unknown function DUF45 NJ56_08450 PF05175 Methyltransferase small domain NJ56_08455 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJ56_08455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NJ56_08460 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NJ56_08460 PF08479 POTRA domain, ShlB-type NJ56_08460 PF17287 POTRA domain NJ56_08485 PF01807 CHC2 zinc finger NJ56_08485 PF08275 DNA primase catalytic core, N-terminal domain NJ56_08485 PF10410 DnaB-helicase binding domain of primase NJ56_08490 PF00589 Phage integrase family NJ56_08490 PF13495 Phage integrase, N-terminal SAM-like domain NJ56_08520 PF10410 DnaB-helicase binding domain of primase NJ56_08520 PF08275 DNA primase catalytic core, N-terminal domain NJ56_08520 PF01807 CHC2 zinc finger NJ56_08530 PF08275 DNA primase catalytic core, N-terminal domain NJ56_08530 PF01807 CHC2 zinc finger NJ56_08530 PF10410 DnaB-helicase binding domain of primase NJ56_08535 PF00589 Phage integrase family NJ56_08535 PF13495 Phage integrase, N-terminal SAM-like domain NJ56_08605 PF00106 short chain dehydrogenase NJ56_08630 PF04546 Sigma-70, non-essential region NJ56_08630 PF03979 Sigma-70 factor, region 1.1 NJ56_08630 PF04539 Sigma-70 region 3 NJ56_08630 PF04545 Sigma-70, region 4 NJ56_08630 PF04542 Sigma-70 region 2 NJ56_08630 PF00140 Sigma-70 factor, region 1.2 NJ56_08635 PF08278 DNA primase DnaG DnaB-binding NJ56_08635 PF08275 DNA primase catalytic core, N-terminal domain NJ56_08635 PF10410 DnaB-helicase binding domain of primase NJ56_08635 PF01807 CHC2 zinc finger NJ56_08640 PF01165 Ribosomal protein S21 NJ56_08645 PF00814 Glycoprotease family NJ56_08650 PF02660 Glycerol-3-phosphate acyltransferase NJ56_08655 PF02152 Dihydroneopterin aldolase NJ56_08660 PF02673 Bacitracin resistance protein BacA NJ56_08665 PF12627 Probable RNA and SrmB- binding site of polymerase A NJ56_08665 PF01743 Poly A polymerase head domain NJ56_08665 PF01966 HD domain NJ56_08670 PF08239 Bacterial SH3 domain NJ56_08675 PF01928 CYTH domain NJ56_08680 PF08335 GlnD PII-uridylyltransferase NJ56_08680 PF03710 Glutamate-ammonia ligase adenylyltransferase NJ56_08685 PF01467 Cytidylyltransferase-like NJ56_08685 PF00294 pfkB family carbohydrate kinase NJ56_08695 PF04380 Membrane fusogenic activity NJ56_08700 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NJ56_08705 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NJ56_08710 PF03738 Glutathionylspermidine synthase preATP-grasp NJ56_08715 PF06693 Protein of unknown function (DUF1190) NJ56_08720 PF02321 Outer membrane efflux protein NJ56_08725 PF00293 NUDIX domain NJ56_08730 PF06853 Protein of unknown function (DUF1249) NJ56_08735 PF00149 Calcineurin-like phosphoesterase NJ56_08740 PF05728 Uncharacterised protein family (UPF0227) NJ56_08745 PF00986 DNA gyrase B subunit, carboxyl terminus NJ56_08745 PF00204 DNA gyrase B NJ56_08745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_08745 PF01751 Toprim domain NJ56_08750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_08750 PF03466 LysR substrate binding domain NJ56_08755 PF02525 Flavodoxin-like fold NJ56_08765 PF00521 DNA gyrase/topoisomerase IV, subunit A NJ56_08765 PF03989 DNA gyrase C-terminal domain, beta-propeller NJ56_08770 PF01553 Acyltransferase NJ56_08775 PF07731 Multicopper oxidase NJ56_08775 PF07732 Multicopper oxidase NJ56_08780 PF08497 Radical SAM N-terminal NJ56_08780 PF04055 Radical SAM superfamily NJ56_08780 PF11842 Domain of unknown function (DUF3362) NJ56_08785 PF00248 Aldo/keto reductase family NJ56_08790 PF00465 Iron-containing alcohol dehydrogenase NJ56_08795 PF06719 AraC-type transcriptional regulator N-terminus NJ56_08795 PF12833 Helix-turn-helix domain NJ56_08800 PF09335 SNARE associated Golgi protein NJ56_08805 PF01053 Cys/Met metabolism PLP-dependent enzyme NJ56_08810 PF01618 MotA/TolQ/ExbB proton channel family NJ56_08815 PF02472 Biopolymer transport protein ExbD/TolR NJ56_08850 PF00437 Type II/IV secretion system protein NJ56_08865 PF00263 Bacterial type II and III secretion system protein NJ56_08865 PF04972 BON domain NJ56_08865 PF13629 Pilus formation protein N terminal region NJ56_08890 PF08501 Shikimate dehydrogenase substrate binding domain NJ56_08895 PF00593 TonB dependent receptor NJ56_08895 PF07715 TonB-dependent Receptor Plug Domain NJ56_08900 PF00756 Putative esterase NJ56_08900 PF11806 Domain of unknown function (DUF3327) NJ56_08905 PF03621 MbtH-like protein NJ56_08910 PF00550 Phosphopantetheine attachment site NJ56_08910 PF00975 Thioesterase domain NJ56_08910 PF13193 AMP-binding enzyme C-terminal domain NJ56_08910 PF00501 AMP-binding enzyme NJ56_08910 PF00668 Condensation domain NJ56_08920 PF00005 ABC transporter NJ56_08925 PF01032 FecCD transport family NJ56_08930 PF01032 FecCD transport family NJ56_08935 PF05977 Transmembrane secretion effector NJ56_08940 PF01497 Periplasmic binding protein NJ56_08945 PF00425 chorismate binding enzyme NJ56_08950 PF13193 AMP-binding enzyme C-terminal domain NJ56_08950 PF00501 AMP-binding enzyme NJ56_08955 PF00857 Isochorismatase family NJ56_08955 PF00550 Phosphopantetheine attachment site NJ56_08965 PF00550 Phosphopantetheine attachment site NJ56_08965 PF00975 Thioesterase domain NJ56_08965 PF13193 AMP-binding enzyme C-terminal domain NJ56_08965 PF00501 AMP-binding enzyme NJ56_08965 PF00668 Condensation domain NJ56_08970 PF00291 Pyridoxal-phosphate dependent enzyme NJ56_08975 PF01490 Transmembrane amino acid transporter protein NJ56_08980 PF00871 Acetokinase family NJ56_08985 PF01228 Glycine radical NJ56_08985 PF02901 Pyruvate formate lyase-like NJ56_08990 PF00294 pfkB family carbohydrate kinase NJ56_08995 PF00571 CBS domain NJ56_08995 PF01380 SIS domain NJ56_09000 PF08220 DeoR-like helix-turn-helix domain NJ56_09000 PF00455 DeoR C terminal sensor domain NJ56_09005 PF06923 Glucitol operon activator protein (GutM) NJ56_09010 PF00106 short chain dehydrogenase NJ56_09015 PF03829 PTS system glucitol/sorbitol-specific IIA component NJ56_09020 PF07663 Sorbitol phosphotransferase enzyme II C-terminus NJ56_09020 PF03612 Sorbitol phosphotransferase enzyme II N-terminus NJ56_09025 PF03608 PTS system enzyme II sorbitol-specific factor NJ56_09035 PF16456 YmgD protein NJ56_09050 PF01464 Transglycosylase SLT domain NJ56_09050 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NJ56_09055 PF04362 Bacterial Fe(2+) trafficking NJ56_09060 PF14815 NUDIX domain NJ56_09060 PF10576 Iron-sulfur binding domain of endonuclease III NJ56_09060 PF00633 Helix-hairpin-helix motif NJ56_09060 PF00730 HhH-GPD superfamily base excision DNA repair protein NJ56_09065 PF02390 Putative methyltransferase NJ56_09070 PF04320 Protein with unknown function (DUF469) NJ56_09075 PF04960 Glutaminase NJ56_09080 PF11101 Protein of unknown function (DUF2884) NJ56_09085 PF06969 HemN C-terminal domain NJ56_09085 PF04055 Radical SAM superfamily NJ56_09090 PF01725 Ham1 family NJ56_09095 PF02594 Uncharacterised ACR, YggU family COG1872 NJ56_09100 PF02325 YGGT family NJ56_09105 PF14748 Pyrroline-5-carboxylate reductase dimerisation NJ56_09105 PF03807 NADP oxidoreductase coenzyme F420-dependent NJ56_09110 PF01168 Alanine racemase, N-terminal domain NJ56_09115 PF00437 Type II/IV secretion system protein NJ56_09120 PF04371 Porphyromonas-type peptidyl-arginine deiminase NJ56_09125 PF00795 Carbon-nitrogen hydrolase NJ56_09130 PF03652 Holliday junction resolvase NJ56_09135 PF02622 Uncharacterized ACR, COG1678 NJ56_09140 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NJ56_09140 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NJ56_09145 PF04452 RNA methyltransferase NJ56_09150 PF04231 Endonuclease I NJ56_09155 PF10263 SprT-like family NJ56_09155 PF17283 SprT-like zinc ribbon domain NJ56_09165 PF04143 Sulphur transport NJ56_09175 PF00438 S-adenosylmethionine synthetase, N-terminal domain NJ56_09175 PF02773 S-adenosylmethionine synthetase, C-terminal domain NJ56_09175 PF02772 S-adenosylmethionine synthetase, central domain NJ56_09180 PF17944 Arginine decarboxylase C-terminal helical extension NJ56_09180 PF17810 Arginine decarboxylase helical bundle domain NJ56_09180 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NJ56_09190 PF00456 Transketolase, thiamine diphosphate binding domain NJ56_09190 PF02780 Transketolase, C-terminal domain NJ56_09190 PF02779 Transketolase, pyrimidine binding domain NJ56_09195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NJ56_09195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NJ56_09200 PF00162 Phosphoglycerate kinase NJ56_09205 PF01116 Fructose-bisphosphate aldolase class-II NJ56_09210 PF05552 Conserved TM helix NJ56_09210 PF00924 Mechanosensitive ion channel NJ56_09215 PF01810 LysE type translocator NJ56_09220 PF04402 Protein of unknown function (DUF541) NJ56_09225 PF03466 LysR substrate binding domain NJ56_09225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_09230 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NJ56_09235 PF01842 ACT domain NJ56_09235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NJ56_09235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJ56_09240 PF01812 5-formyltetrahydrofolate cyclo-ligase family NJ56_09250 PF05164 Cell division protein ZapA NJ56_09255 PF03695 Uncharacterised protein family (UPF0149) NJ56_09260 PF05195 Aminopeptidase P, N-terminal domain NJ56_09260 PF00557 Metallopeptidase family M24 NJ56_09265 PF01494 FAD binding domain NJ56_09270 PF01494 FAD binding domain NJ56_09275 PF01571 Aminomethyltransferase folate-binding domain NJ56_09275 PF08669 Glycine cleavage T-protein C-terminal barrel domain NJ56_09280 PF01597 Glycine cleavage H-protein NJ56_09285 PF02347 Glycine cleavage system P-protein NJ56_09295 PF03006 Haemolysin-III related NJ56_09300 PF01571 Aminomethyltransferase folate-binding domain NJ56_09305 PF03937 Flavinator of succinate dehydrogenase NJ56_09310 PF07254 Membrane-bound toxin component of toxin-antitoxin system NJ56_09315 PF00258 Flavodoxin NJ56_09320 PF02899 Phage integrase, N-terminal SAM-like domain NJ56_09320 PF00589 Phage integrase family NJ56_09325 PF10411 Disulfide bond isomerase protein N-terminus NJ56_09325 PF13098 Thioredoxin-like domain NJ56_09330 PF01368 DHH family NJ56_09330 PF02272 DHHA1 domain NJ56_09330 PF17768 RecJ OB domain NJ56_09340 PF00152 tRNA synthetases class II (D, K and N) NJ56_09340 PF01336 OB-fold nucleic acid binding domain NJ56_09350 PF02405 Permease MlaE NJ56_09355 PF00005 ABC transporter NJ56_09380 PF00263 Bacterial type II and III secretion system protein NJ56_09380 PF03958 Bacterial type II/III secretion system short domain NJ56_09385 PF00437 Type II/IV secretion system protein NJ56_09390 PF00482 Type II secretion system (T2SS), protein F NJ56_09395 PF08334 Type II secretion system (T2SS), protein G NJ56_09395 PF07963 Prokaryotic N-terminal methylation motif NJ56_09405 PF07963 Prokaryotic N-terminal methylation motif NJ56_09405 PF02501 Type II secretion system (T2SS), protein I NJ56_09410 PF07963 Prokaryotic N-terminal methylation motif NJ56_09410 PF11612 Type II secretion system (T2SS), protein J NJ56_09450 PF03466 LysR substrate binding domain NJ56_09450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_09455 PF03466 LysR substrate binding domain NJ56_09455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_09460 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NJ56_09460 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NJ56_09465 PF00356 Bacterial regulatory proteins, lacI family NJ56_09470 PF00501 AMP-binding enzyme NJ56_09470 PF01553 Acyltransferase NJ56_09470 PF13193 AMP-binding enzyme C-terminal domain NJ56_09475 PF07690 Major Facilitator Superfamily NJ56_09480 PF00248 Aldo/keto reductase family NJ56_09485 PF03741 Integral membrane protein TerC family NJ56_09490 PF02976 DNA mismatch repair enzyme MutH NJ56_09500 PF00293 NUDIX domain NJ56_09505 PF05524 PEP-utilising enzyme, N-terminal NJ56_09505 PF01590 GAF domain NJ56_09505 PF02896 PEP-utilising enzyme, TIM barrel domain NJ56_09505 PF00391 PEP-utilising enzyme, mobile domain NJ56_09510 PF01790 Prolipoprotein diacylglyceryl transferase NJ56_09515 PF00303 Thymidylate synthase NJ56_09525 PF07963 Prokaryotic N-terminal methylation motif NJ56_09525 PF00114 Pilin (bacterial filament) NJ56_09540 PF12528 Type II secretion prepilin peptidase dependent protein C NJ56_09540 PF07963 Prokaryotic N-terminal methylation motif NJ56_09545 PF17946 RecC C-terminal domain NJ56_09550 PF05193 Peptidase M16 inactive domain NJ56_09550 PF00675 Insulinase (Peptidase family M16) NJ56_09550 PF16187 Middle or third domain of peptidase_M16 NJ56_09555 PF00580 UvrD/REP helicase N-terminal domain NJ56_09555 PF12705 PD-(D/E)XK nuclease superfamily NJ56_09555 PF13361 UvrD-like helicase C-terminal domain NJ56_09560 PF13538 UvrD-like helicase C-terminal domain NJ56_09565 PF00583 Acetyltransferase (GNAT) family NJ56_09565 PF00696 Amino acid kinase family NJ56_09570 PF01520 N-acetylmuramoyl-L-alanine amidase NJ56_09570 PF11741 AMIN domain NJ56_09590 PF03562 MltA specific insert domain NJ56_09590 PF06725 3D domain NJ56_09595 PF00899 ThiF family NJ56_09600 PF02657 Fe-S metabolism associated domain NJ56_09605 PF00266 Aminotransferase class-V NJ56_09610 PF06004 Bacterial protein of unknown function (DUF903) NJ56_09615 PF03466 LysR substrate binding domain NJ56_09615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_09620 PF04241 Protein of unknown function (DUF423) NJ56_09625 PF18125 RlmM ferredoxin-like domain NJ56_09625 PF01728 FtsJ-like methyltransferase NJ56_09630 PF01367 5'-3' exonuclease, C-terminal SAM fold NJ56_09630 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NJ56_09635 PF11892 Domain of unknown function (DUF3412) NJ56_09635 PF03641 Possible lysine decarboxylase NJ56_09635 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NJ56_09640 PF14489 QueF-like protein NJ56_09640 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NJ56_09645 PF07348 Syd protein (SUKH-2) NJ56_09650 PF04287 tRNA pseudouridine synthase C NJ56_09655 PF00849 RNA pseudouridylate synthase NJ56_09660 PF00258 Flavodoxin NJ56_09665 PF11944 Protein of unknown function (DUF3461) NJ56_09670 PF00132 Bacterial transferase hexapeptide (six repeats) NJ56_09670 PF14602 Hexapeptide repeat of succinyl-transferase NJ56_09670 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NJ56_09675 PF01966 HD domain NJ56_09675 PF01842 ACT domain NJ56_09675 PF01909 Nucleotidyltransferase domain NJ56_09675 PF08335 GlnD PII-uridylyltransferase NJ56_09680 PF00557 Metallopeptidase family M24 NJ56_09685 PF00318 Ribosomal protein S2 NJ56_09690 PF00889 Elongation factor TS NJ56_09695 PF00696 Amino acid kinase family NJ56_09700 PF01765 Ribosome recycling factor NJ56_09705 PF13288 DXP reductoisomerase C-terminal domain NJ56_09705 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NJ56_09705 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NJ56_09710 PF01255 Putative undecaprenyl diphosphate synthase NJ56_09720 PF02163 Peptidase family M50 NJ56_09720 PF17820 PDZ domain NJ56_09725 PF01103 Surface antigen NJ56_09725 PF07244 Surface antigen variable number repeat NJ56_09730 PF03938 Outer membrane protein (OmpH-like) NJ56_09735 PF00132 Bacterial transferase hexapeptide (six repeats) NJ56_09735 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NJ56_09740 PF07977 FabA-like domain NJ56_09745 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NJ56_09745 PF00132 Bacterial transferase hexapeptide (six repeats) NJ56_09750 PF02684 Lipid-A-disaccharide synthetase NJ56_09755 PF01351 Ribonuclease HII NJ56_09760 PF14579 Helix-hairpin-helix motif NJ56_09760 PF07733 Bacterial DNA polymerase III alpha NTPase domain NJ56_09760 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NJ56_09760 PF01336 OB-fold nucleic acid binding domain NJ56_09760 PF02811 PHP domain NJ56_09765 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NJ56_09785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NJ56_09790 PF01171 PP-loop family NJ56_09790 PF09179 TilS substrate binding domain NJ56_09790 PF11734 TilS substrate C-terminal domain NJ56_09795 PF00034 Cytochrome c NJ56_09800 PF07073 Modulator of Rho-dependent transcription termination (ROF) NJ56_09805 PF06786 Uncharacterised protein family (UPF0253) NJ56_09810 PF07152 YaeQ protein NJ56_09815 PF00472 RF-1 domain NJ56_09820 PF04170 NlpE N-terminal domain NJ56_09820 PF17185 NlpE C-terminal OB domain NJ56_09825 PF03129 Anticodon binding domain NJ56_09825 PF04073 Aminoacyl-tRNA editing domain NJ56_09825 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NJ56_09830 PF18389 TrmO C-terminal domain NJ56_09830 PF01980 tRNA-methyltransferase O NJ56_09835 PF16358 RcsF lipoprotein NJ56_09840 PF03180 NLPA lipoprotein NJ56_09845 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_09850 PF09383 NIL domain NJ56_09850 PF00005 ABC transporter NJ56_09880 PF10043 Predicted periplasmic lipoprotein (DUF2279) NJ56_09885 PF13091 PLD-like domain NJ56_09890 PF13380 CoA binding domain NJ56_09890 PF00583 Acetyltransferase (GNAT) family NJ56_09890 PF13607 Succinyl-CoA ligase like flavodoxin domain NJ56_09900 PF00085 Thioredoxin NJ56_09905 PF00588 SpoU rRNA Methylase family NJ56_09905 PF08032 RNA 2'-O ribose methyltransferase substrate binding NJ56_09910 PF07690 Major Facilitator Superfamily NJ56_09915 PF00529 HlyD membrane-fusion protein of T1SS NJ56_09915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJ56_09925 PF01047 MarR family NJ56_09930 PF07690 Major Facilitator Superfamily NJ56_09940 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NJ56_09945 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_09950 PF00571 CBS domain NJ56_09950 PF00005 ABC transporter NJ56_09955 PF00268 Ribonucleotide reductase, small chain NJ56_09960 PF08343 Ribonucleotide reductase N-terminal NJ56_09960 PF02867 Ribonucleotide reductase, barrel domain NJ56_09960 PF00317 Ribonucleotide reductase, all-alpha domain NJ56_09965 PF07972 NrdI Flavodoxin like NJ56_09980 PF09400 Protein of unknown function (DUF2002) NJ56_09985 PF06711 Protein of unknown function (DUF1198) NJ56_09995 PF00313 'Cold-shock' DNA-binding domain NJ56_10000 PF06039 Malate:quinone oxidoreductase (Mqo) NJ56_10005 PF01070 FMN-dependent dehydrogenase NJ56_10010 PF02652 L-lactate permease NJ56_10015 PF03466 LysR substrate binding domain NJ56_10015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_10020 PF00561 alpha/beta hydrolase fold NJ56_10030 PF00005 ABC transporter NJ56_10035 PF02653 Branched-chain amino acid transport system / permease component NJ56_10045 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NJ56_10045 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NJ56_10050 PF01380 SIS domain NJ56_10050 PF00571 CBS domain NJ56_10075 PF18807 Tripartite Tc toxins repeat NJ56_10075 PF14431 YwqJ-like deaminase NJ56_10080 PF03534 Salmonella virulence plasmid 65kDa B protein NJ56_10080 PF12255 Insecticide toxin TcdB middle/C-terminal region NJ56_10080 PF12256 Insecticide toxin TcdB middle/N-terminal region NJ56_10090 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain NJ56_10090 PF18413 Neuraminidase-like domain NJ56_10090 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain NJ56_10090 PF18413 Neuraminidase-like domain NJ56_10100 PF01527 Transposase NJ56_10120 PF03466 LysR substrate binding domain NJ56_10120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_10145 PF13954 PapC N-terminal domain NJ56_10145 PF00577 Outer membrane usher protein NJ56_10145 PF13953 PapC C-terminal domain NJ56_10150 PF02753 Pili assembly chaperone PapD, C-terminal domain NJ56_10150 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NJ56_10205 PF17345 Family of unknown function (DUF5375) NJ56_10235 PF04606 Ogr/Delta-like zinc finger NJ56_10245 PF13356 Arm DNA-binding domain NJ56_10245 PF00589 Phage integrase family NJ56_10255 PF01668 SmpB protein NJ56_10260 PF03364 Polyketide cyclase / dehydrase and lipid transport NJ56_10265 PF03658 RnfH family Ubiquitin NJ56_10270 PF04355 SmpA / OmlA family NJ56_10275 PF02463 RecF/RecN/SMC N terminal domain NJ56_10280 PF01513 ATP-NAD kinase NJ56_10290 PF01025 GrpE NJ56_10295 PF03167 Uracil DNA glycosylase superfamily NJ56_10300 PF01228 Glycine radical NJ56_10310 PF12796 Ankyrin repeats (3 copies) NJ56_10315 PF00271 Helicase conserved C-terminal domain NJ56_10315 PF00270 DEAD/DEAH box helicase NJ56_10320 PF05175 Methyltransferase small domain NJ56_10325 PF02910 Fumarate reductase flavoprotein C-term NJ56_10325 PF00890 FAD binding domain NJ56_10330 PF04542 Sigma-70 region 2 NJ56_10330 PF08281 Sigma-70, region 4 NJ56_10335 PF03873 Anti sigma-E protein RseA, C-terminal domain NJ56_10335 PF03872 Anti sigma-E protein RseA, N-terminal domain NJ56_10340 PF03888 MucB/RseB N-terminal domain NJ56_10340 PF17188 MucB/RseB C-terminal domain NJ56_10350 PF00679 Elongation factor G C-terminus NJ56_10350 PF03144 Elongation factor Tu domain 2 NJ56_10350 PF00009 Elongation factor Tu GTP binding domain NJ56_10350 PF06421 GTP-binding protein LepA C-terminus NJ56_10355 PF10502 Signal peptidase, peptidase S26 NJ56_10360 PF00035 Double-stranded RNA binding motif NJ56_10360 PF14622 Ribonuclease-III-like NJ56_10365 PF01926 50S ribosome-binding GTPase NJ56_10365 PF07650 KH domain NJ56_10370 PF02565 Recombination protein O C terminal NJ56_10370 PF11967 Recombination protein O N terminal NJ56_10375 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NJ56_10380 PF01648 4'-phosphopantetheinyl transferase superfamily NJ56_10385 PF12838 4Fe-4S dicluster domain NJ56_10390 PF01380 SIS domain NJ56_10390 PF01418 Helix-turn-helix domain, rpiR family NJ56_10395 PF01380 SIS domain NJ56_10400 PF02378 Phosphotransferase system, EIIC NJ56_10400 PF00367 phosphotransferase system, EIIB NJ56_10410 PF14437 MafB19-like deaminase NJ56_10415 PF01464 Transglycosylase SLT domain NJ56_10415 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJ56_10420 PF02769 AIR synthase related protein, C-terminal domain NJ56_10420 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NJ56_10420 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NJ56_10435 PF00512 His Kinase A (phospho-acceptor) domain NJ56_10435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_10440 PF13942 YfhG lipoprotein NJ56_10445 PF00158 Sigma-54 interaction domain NJ56_10445 PF00072 Response regulator receiver domain NJ56_10450 PF02540 NAD synthase NJ56_10450 PF00795 Carbon-nitrogen hydrolase NJ56_10455 PF00543 Nitrogen regulatory protein P-II NJ56_10460 PF10797 Protein of unknown function NJ56_10465 PF10941 Protein of unknown function DUF2620 NJ56_10470 PF02126 Phosphotriesterase family NJ56_10475 PF01168 Alanine racemase, N-terminal domain NJ56_10485 PF14502 Helix-turn-helix domain NJ56_10485 PF14503 YhfZ C-terminal domain NJ56_10490 PF00175 Oxidoreductase NAD-binding domain NJ56_10490 PF00042 Globin NJ56_10490 PF00970 Oxidoreductase FAD-binding domain NJ56_10495 PF00464 Serine hydroxymethyltransferase NJ56_10500 PF12832 MFS_1 like family NJ56_10505 PF00874 PRD domain NJ56_10510 PF06226 Protein of unknown function (DUF1007) NJ56_10515 PF03824 High-affinity nickel-transport protein NJ56_10520 PF00459 Inositol monophosphatase family NJ56_10525 PF00588 SpoU rRNA Methylase family NJ56_10530 PF02082 Transcriptional regulator NJ56_10535 PF00266 Aminotransferase class-V NJ56_10540 PF01592 NifU-like N terminal domain NJ56_10545 PF01521 Iron-sulphur cluster biosynthesis NJ56_10550 PF00226 DnaJ domain NJ56_10550 PF07743 HSCB C-terminal oligomerisation domain NJ56_10555 PF00012 Hsp70 protein NJ56_10560 PF00111 2Fe-2S iron-sulfur cluster binding domain NJ56_10565 PF04384 Iron-sulphur cluster assembly NJ56_10570 PF12404 Peptidase NJ56_10570 PF00883 Cytosol aminopeptidase family, catalytic domain NJ56_10575 PF07179 SseB protein N-terminal domain NJ56_10575 PF14581 SseB protein C-terminal domain NJ56_10580 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain NJ56_10580 PF11974 Bacterial alpha-2-macroglobulin MG3 domain NJ56_10580 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain NJ56_10580 PF17962 Bacterial macroglobulin domain 6 NJ56_10580 PF01835 MG2 domain NJ56_10580 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain NJ56_10580 PF07678 A-macroglobulin TED domain NJ56_10580 PF00207 Alpha-2-macroglobulin family NJ56_10580 PF07703 Alpha-2-macroglobulin bait region domain NJ56_10585 PF00905 Penicillin binding protein transpeptidase domain NJ56_10585 PF00912 Transglycosylase NJ56_10585 PF06832 Penicillin-Binding Protein C-terminus Family NJ56_10595 PF00334 Nucleoside diphosphate kinase NJ56_10600 PF04055 Radical SAM superfamily NJ56_10610 PF13464 Domain of unknown function (DUF4115) NJ56_10615 PF04551 GcpE protein NJ56_10620 PF03129 Anticodon binding domain NJ56_10620 PF13393 Histidyl-tRNA synthetase NJ56_10625 PF09976 Tetratricopeptide repeat-like domain NJ56_10630 PF13360 PQQ-like domain NJ56_10635 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NJ56_10635 PF01926 50S ribosome-binding GTPase NJ56_10640 PF07191 zinc-ribbons NJ56_10645 PF13742 OB-fold nucleic acid binding domain NJ56_10645 PF02601 Exonuclease VII, large subunit NJ56_10650 PF00478 IMP dehydrogenase / GMP reductase domain NJ56_10650 PF00571 CBS domain NJ56_10655 PF00117 Glutamine amidotransferase class-I NJ56_10655 PF00958 GMP synthase C terminal domain NJ56_10655 PF02540 NAD synthase NJ56_10695 PF08543 Phosphomethylpyrimidine kinase NJ56_10710 PF00781 Diacylglycerol kinase catalytic domain NJ56_10720 PF07411 Domain of unknown function (DUF1508) NJ56_10725 PF00486 Transcriptional regulatory protein, C terminal NJ56_10725 PF00072 Response regulator receiver domain NJ56_10730 PF00512 His Kinase A (phospho-acceptor) domain NJ56_10730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_10730 PF00672 HAMP domain NJ56_10735 PF07690 Major Facilitator Superfamily NJ56_10740 PF00873 AcrB/AcrD/AcrF family NJ56_10745 PF00873 AcrB/AcrD/AcrF family NJ56_10750 PF13533 Biotin-lipoyl like NJ56_10770 PF00577 Outer membrane usher protein NJ56_10770 PF13954 PapC N-terminal domain NJ56_10770 PF13953 PapC C-terminal domain NJ56_10775 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NJ56_10775 PF02753 Pili assembly chaperone PapD, C-terminal domain NJ56_10785 PF00012 Hsp70 protein NJ56_10790 PF01769 Divalent cation transporter NJ56_10790 PF03448 MgtE intracellular N domain NJ56_10790 PF00571 CBS domain NJ56_10800 PF02541 Ppx/GppA phosphatase family NJ56_10805 PF02503 Polyphosphate kinase middle domain NJ56_10805 PF17941 Polyphosphate kinase C-terminal domain 1 NJ56_10805 PF13089 Polyphosphate kinase N-terminal domain NJ56_10805 PF13090 Polyphosphate kinase C-terminal domain 2 NJ56_10810 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_10815 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_10820 PF00005 ABC transporter NJ56_10825 PF13302 Acetyltransferase (GNAT) domain NJ56_10830 PF00551 Formyl transferase NJ56_10840 PF00586 AIR synthase related protein, N-terminal domain NJ56_10840 PF02769 AIR synthase related protein, C-terminal domain NJ56_10855 PF00860 Permease family NJ56_10860 PF00308 Bacterial dnaA protein NJ56_10865 PF03960 ArsC family NJ56_10870 PF01435 Peptidase family M48 NJ56_10870 PF07720 Tetratricopeptide repeat NJ56_10875 PF01594 AI-2E family transporter NJ56_10880 PF00578 AhpC/TSA family NJ56_10885 PF01842 ACT domain NJ56_10890 PF00701 Dihydrodipicolinate synthetase family NJ56_10895 PF06804 NlpB/DapX lipoprotein NJ56_10900 PF01259 SAICAR synthetase NJ56_10905 PF04284 Protein of unknown function (DUF441) NJ56_10910 PF17176 tRNA-binding domain NJ56_10910 PF08351 Domain of unknown function (DUF1726) NJ56_10910 PF05127 Helicase NJ56_10910 PF13718 GNAT acetyltransferase 2 NJ56_10915 PF02230 Phospholipase/Carboxylesterase NJ56_10920 PF13980 Uncharacterised protein family (UPF0370) NJ56_10925 PF02557 D-alanyl-D-alanine carboxypeptidase NJ56_10930 PF01546 Peptidase family M20/M25/M40 NJ56_10930 PF07687 Peptidase dimerisation domain NJ56_10935 PF03960 ArsC family NJ56_10940 PF01817 Chorismate mutase type II NJ56_10950 PF00873 AcrB/AcrD/AcrF family NJ56_10960 PF00072 Response regulator receiver domain NJ56_10960 PF00196 Bacterial regulatory proteins, luxR family NJ56_10970 PF00037 4Fe-4S binding domain NJ56_10970 PF13187 4Fe-4S dicluster domain NJ56_10970 PF12800 4Fe-4S binding domain NJ56_10975 PF03927 NapD protein NJ56_10980 PF10518 TAT (twin-arginine translocation) pathway signal sequence NJ56_10980 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NJ56_10980 PF01568 Molydopterin dinucleotide binding domain NJ56_10980 PF00384 Molybdopterin oxidoreductase NJ56_10985 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NJ56_10990 PF03264 NapC/NirT cytochrome c family, N-terminal region NJ56_10995 PF00293 NUDIX domain NJ56_11000 PF03949 Malic enzyme, NAD binding domain NJ56_11000 PF00390 Malic enzyme, N-terminal domain NJ56_11000 PF01515 Phosphate acetyl/butaryl transferase NJ56_11005 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NJ56_11010 PF01218 Coproporphyrinogen III oxidase NJ56_11015 PF00583 Acetyltransferase (GNAT) family NJ56_11070 PF04076 Bacterial OB fold (BOF) protein NJ56_11075 PF06572 Protein of unknown function (DUF1131) NJ56_11080 PF04261 Dyp-type peroxidase family NJ56_11085 PF00701 Dihydrodipicolinate synthetase family NJ56_11090 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase NJ56_11095 PF00480 ROK family NJ56_11100 PF04074 YhcH/YjgK/YiaL NJ56_11105 PF01418 Helix-turn-helix domain, rpiR family NJ56_11105 PF01380 SIS domain NJ56_11110 PF07690 Major Facilitator Superfamily NJ56_11120 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_11125 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_11130 PF00005 ABC transporter NJ56_11135 PF00291 Pyridoxal-phosphate dependent enzyme NJ56_11140 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NJ56_11145 PF02896 PEP-utilising enzyme, TIM barrel domain NJ56_11145 PF05524 PEP-utilising enzyme, N-terminal NJ56_11145 PF00391 PEP-utilising enzyme, mobile domain NJ56_11150 PF00381 PTS HPr component phosphorylation site NJ56_11155 PF00291 Pyridoxal-phosphate dependent enzyme NJ56_11165 PF04354 ZipA, C-terminal FtsZ-binding domain NJ56_11170 PF00533 BRCA1 C Terminus (BRCT) domain NJ56_11170 PF01653 NAD-dependent DNA ligase adenylation domain NJ56_11170 PF03120 NAD-dependent DNA ligase OB-fold domain NJ56_11170 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NJ56_11170 PF12826 Helix-hairpin-helix motif NJ56_11175 PF12843 Putative quorum-sensing-regulated virulence factor NJ56_11205 PF00749 tRNA synthetases class I (E and Q), catalytic domain NJ56_11240 PF01773 Na+ dependent nucleoside transporter N-terminus NJ56_11240 PF07670 Nucleoside recognition NJ56_11240 PF07662 Na+ dependent nucleoside transporter C-terminus NJ56_11245 PF01566 Natural resistance-associated macrophage protein NJ56_11255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_11255 PF03466 LysR substrate binding domain NJ56_11265 PF02685 Glucokinase NJ56_11270 PF07690 Major Facilitator Superfamily NJ56_11275 PF04397 LytTr DNA-binding domain NJ56_11275 PF00072 Response regulator receiver domain NJ56_11280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_11280 PF07694 5TMR of 5TMR-LYT NJ56_11280 PF06580 Histidine kinase NJ56_11285 PF07350 Protein of unknown function (DUF1479) NJ56_11290 PF00155 Aminotransferase class I and II NJ56_11295 PF01292 Prokaryotic cytochrome b561 NJ56_11310 PF13406 Transglycosylase SLT domain NJ56_11315 PF08274 PhnA Zinc-Ribbon NJ56_11315 PF03831 PhnA domain NJ56_11330 PF00005 ABC transporter NJ56_11335 PF03379 CcmB protein NJ56_11340 PF01578 Cytochrome C assembly protein NJ56_11345 PF04995 Heme exporter protein D (CcmD) NJ56_11350 PF03100 CcmE NJ56_11355 PF01578 Cytochrome C assembly protein NJ56_11355 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NJ56_11360 PF08534 Redoxin NJ56_11365 PF03918 Cytochrome C biogenesis protein NJ56_11370 PF03918 Cytochrome C biogenesis protein NJ56_11375 PF04333 MlaA lipoprotein NJ56_11380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NJ56_11385 PF04175 Protein of unknown function (DUF406) NJ56_11390 PF02803 Thiolase, C-terminal domain NJ56_11390 PF00108 Thiolase, N-terminal domain NJ56_11395 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NJ56_11395 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NJ56_11395 PF00378 Enoyl-CoA hydratase/isomerase NJ56_11405 PF00300 Histidine phosphatase superfamily (branch 1) NJ56_11410 PF01713 Smr domain NJ56_11415 PF05175 Methyltransferase small domain NJ56_11420 PF01264 Chorismate synthase NJ56_11425 PF03411 Penicillin-insensitive murein endopeptidase NJ56_11430 PF01925 Sulfite exporter TauE/SafE NJ56_11435 PF04315 Elongation factor P hydroxylase NJ56_11440 PF08891 YfcL protein NJ56_11445 PF01266 FAD dependent oxidoreductase NJ56_11445 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NJ56_11450 PF00109 Beta-ketoacyl synthase, N-terminal domain NJ56_11450 PF02801 Beta-ketoacyl synthase, C-terminal domain NJ56_11480 PF00578 AhpC/TSA family NJ56_11485 PF00155 Aminotransferase class I and II NJ56_11505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NJ56_11505 PF11890 Domain of unknown function (DUF3410) NJ56_11505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJ56_11510 PF01118 Semialdehyde dehydrogenase, NAD binding domain NJ56_11510 PF02774 Semialdehyde dehydrogenase, dimerisation domain NJ56_11515 PF01416 tRNA pseudouridine synthase NJ56_11520 PF09335 SNARE associated Golgi protein NJ56_11525 PF17848 Acetyl-coA carboxylase zinc finger domain NJ56_11525 PF01039 Carboxyl transferase domain NJ56_11530 PF02875 Mur ligase family, glutamate ligase domain NJ56_11530 PF08245 Mur ligase middle domain NJ56_11535 PF05036 Sporulation related domain NJ56_11540 PF02674 Colicin V production protein NJ56_11545 PF00156 Phosphoribosyl transferase domain NJ56_11550 PF02441 Flavoprotein NJ56_11555 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJ56_11560 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_11565 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_11570 PF00005 ABC transporter NJ56_11575 PF01370 NAD dependent epimerase/dehydratase family NJ56_11575 PF08338 Domain of unknown function (DUF1731) NJ56_11580 PF00043 Glutathione S-transferase, C-terminal domain NJ56_11580 PF02798 Glutathione S-transferase, N-terminal domain NJ56_11590 PF12850 Calcineurin-like phosphoesterase superfamily domain NJ56_11595 PF00293 NUDIX domain NJ56_11600 PF03611 PTS system sugar-specific permease component NJ56_11610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NJ56_11615 PF00356 Bacterial regulatory proteins, lacI family NJ56_11615 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NJ56_11620 PF07085 DRTGG domain NJ56_11620 PF01515 Phosphate acetyl/butaryl transferase NJ56_11625 PF00871 Acetokinase family NJ56_11630 PF04217 Protein of unknown function, DUF412 NJ56_11635 PF03887 YfbU domain NJ56_11645 PF03600 Citrate transporter NJ56_11645 PF02080 TrkA-C domain NJ56_11655 PF00155 Aminotransferase class I and II NJ56_11665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_11665 PF03466 LysR substrate binding domain NJ56_11670 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NJ56_11675 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NJ56_11680 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NJ56_11680 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NJ56_11690 PF10531 SLBB domain NJ56_11690 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NJ56_11690 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NJ56_11695 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NJ56_11695 PF00384 Molybdopterin oxidoreductase NJ56_11695 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NJ56_11695 PF01568 Molydopterin dinucleotide binding domain NJ56_11700 PF00146 NADH dehydrogenase NJ56_11705 PF12838 4Fe-4S dicluster domain NJ56_11710 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NJ56_11715 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NJ56_11720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NJ56_11720 PF00361 Proton-conducting membrane transporter NJ56_11725 PF00361 Proton-conducting membrane transporter NJ56_11730 PF00361 Proton-conducting membrane transporter NJ56_11735 PF06496 Protein of unknown function (DUF1097) NJ56_11740 PF05957 Bacterial protein of unknown function (DUF883) NJ56_11745 PF00425 chorismate binding enzyme NJ56_11750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJ56_11750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NJ56_11750 PF16582 Middle domain of thiamine pyrophosphate NJ56_11755 PF12697 Alpha/beta hydrolase family NJ56_11760 PF00378 Enoyl-CoA hydratase/isomerase NJ56_11765 PF13378 Enolase C-terminal domain-like NJ56_11770 PF00501 AMP-binding enzyme NJ56_11770 PF13193 AMP-binding enzyme C-terminal domain NJ56_11775 PF00199 Catalase NJ56_11775 PF06628 Catalase-related immune-responsive NJ56_11780 PF07437 YfaZ precursor NJ56_11785 PF03222 Tryptophan/tyrosine permease family NJ56_11795 PF00535 Glycosyl transferase family 2 NJ56_11800 PF04138 GtrA-like protein NJ56_11805 PF00994 Probable molybdopterin binding domain NJ56_11810 PF03974 Ecotin NJ56_11820 PF00111 2Fe-2S iron-sulfur cluster binding domain NJ56_11825 PF00268 Ribonucleotide reductase, small chain NJ56_11830 PF02867 Ribonucleotide reductase, barrel domain NJ56_11830 PF03477 ATP cone domain NJ56_11830 PF00317 Ribonucleotide reductase, all-alpha domain NJ56_11840 PF00521 DNA gyrase/topoisomerase IV, subunit A NJ56_11840 PF03989 DNA gyrase C-terminal domain, beta-propeller NJ56_11845 PF00512 His Kinase A (phospho-acceptor) domain NJ56_11845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_11845 PF09456 RcsC Alpha-Beta-Loop (ABL) NJ56_11845 PF00072 Response regulator receiver domain NJ56_11850 PF00072 Response regulator receiver domain NJ56_11850 PF00196 Bacterial regulatory proteins, luxR family NJ56_11855 PF01627 Hpt domain NJ56_11855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_11855 PF16359 RcsD-ABL domain NJ56_11860 PF07690 Major Facilitator Superfamily NJ56_11865 PF00267 Gram-negative porin NJ56_11880 PF13302 Acetyltransferase (GNAT) domain NJ56_11885 PF00144 Beta-lactamase NJ56_11890 PF12706 Beta-lactamase superfamily domain NJ56_11895 PF06183 DinI-like family NJ56_11935 PF10065 Uncharacterized conserved protein (DUF2303) NJ56_11955 PF01381 Helix-turn-helix NJ56_11955 PF00717 Peptidase S24-like NJ56_11980 PF03354 Phage Terminase NJ56_11985 PF05869 DNA N-6-adenine-methyltransferase (Dam) NJ56_12005 PF06147 Protein of unknown function (DUF968) NJ56_12015 PF01555 DNA methylase NJ56_12020 PF00561 alpha/beta hydrolase fold NJ56_12035 PF00182 Chitinase class I NJ56_12050 PF09669 Phage regulatory protein Rha (Phage_pRha) NJ56_12050 PF10549 ORF11CD3 domain NJ56_12065 PF03354 Phage Terminase NJ56_12110 PF17482 Phage tail sheath C-terminal domain NJ56_12110 PF04984 Phage tail sheath protein subtilisin-like domain NJ56_12155 PF04865 Baseplate J-like protein NJ56_12160 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) NJ56_12190 PF11893 Domain of unknown function (DUF3413) NJ56_12190 PF00884 Sulfatase NJ56_12195 PF07208 Protein of unknown function (DUF1414) NJ56_12200 PF04245 37-kD nucleoid-associated bacterial protein NJ56_12205 PF01386 Ribosomal L25p family NJ56_12210 PF00271 Helicase conserved C-terminal domain NJ56_12210 PF04851 Type III restriction enzyme, res subunit NJ56_12215 PF00849 RNA pseudouridylate synthase NJ56_12215 PF01479 S4 domain NJ56_12220 PF07690 Major Facilitator Superfamily NJ56_12225 PF13989 YejG-like protein NJ56_12230 PF00005 ABC transporter NJ56_12230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJ56_12235 PF12911 N-terminal TM domain of oligopeptide transport permease C NJ56_12235 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_12240 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_12245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJ56_12250 PF12792 CSS motif domain associated with EAL NJ56_12250 PF00563 EAL domain NJ56_12255 PF00877 NlpC/P60 family NJ56_12260 PF01569 PAP2 superfamily NJ56_12265 PF07683 Cobalamin synthesis protein cobW C-terminal domain NJ56_12265 PF02492 CobW/HypB/UreG, nucleotide-binding domain NJ56_12280 PF08125 Mannitol dehydrogenase C-terminal domain NJ56_12280 PF01232 Mannitol dehydrogenase Rossmann domain NJ56_12290 PF03786 D-mannonate dehydratase (UxuA) NJ56_12295 PF09285 Elongation factor P, C-terminal NJ56_12295 PF08207 Elongation factor P (EF-P) KOW-like domain NJ56_12295 PF01132 Elongation factor P (EF-P) OB domain NJ56_12300 PF03222 Tryptophan/tyrosine permease family NJ56_12305 PF03692 Putative zinc- or iron-chelating domain NJ56_12310 PF00384 Molybdopterin oxidoreductase NJ56_12310 PF18364 Molybdopterin oxidoreductase N-terminal domain NJ56_12310 PF01568 Molydopterin dinucleotide binding domain NJ56_12315 PF03264 NapC/NirT cytochrome c family, N-terminal region NJ56_12320 PF00293 NUDIX domain NJ56_12325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NJ56_12325 PF00381 PTS HPr component phosphorylation site NJ56_12330 PF00294 pfkB family carbohydrate kinase NJ56_12335 PF02378 Phosphotransferase system, EIIC NJ56_12335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NJ56_12340 PF01261 Xylose isomerase-like TIM barrel NJ56_12345 PF03601 Conserved hypothetical protein 698 NJ56_12360 PF03466 LysR substrate binding domain NJ56_12360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_12365 PF00324 Amino acid permease NJ56_12375 PF01032 FecCD transport family NJ56_12380 PF00005 ABC transporter NJ56_12385 PF00593 TonB dependent receptor NJ56_12385 PF07715 TonB-dependent Receptor Plug Domain NJ56_12395 PF13520 Amino acid permease NJ56_12400 PF00929 Exonuclease NJ56_12400 PF08411 Exonuclease C-terminal NJ56_12410 PF04632 Fusaric acid resistance protein family NJ56_12415 PF04363 Protein of unknown function (DUF496) NJ56_12485 PF18818 Metallopeptidase superfamily domain NJ56_12485 PF08401 Domain of unknown function (DUF1738) NJ56_12505 PF00437 Type II/IV secretion system protein NJ56_12510 PF03743 Bacterial conjugation TrbI-like protein NJ56_12515 PF03524 Conjugal transfer protein NJ56_12520 PF04335 VirB8 protein NJ56_12540 PF03135 CagE, TrbE, VirB family, component of type IV transporter system NJ56_12575 PF13693 Winged helix-turn-helix DNA-binding NJ56_12590 PF00589 Phage integrase family NJ56_12590 PF13356 Arm DNA-binding domain NJ56_12605 PF00005 ABC transporter NJ56_12605 PF08402 TOBE domain NJ56_12610 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_12620 PF07690 Major Facilitator Superfamily NJ56_12625 PF05231 MASE1 NJ56_12625 PF07730 Histidine kinase NJ56_12625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_12630 PF00196 Bacterial regulatory proteins, luxR family NJ56_12630 PF00072 Response regulator receiver domain NJ56_12635 PF12431 Transcriptional regulator NJ56_12635 PF00072 Response regulator receiver domain NJ56_12640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_12640 PF00989 PAS fold NJ56_12640 PF17203 Single cache domain 3 NJ56_12640 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NJ56_12645 PF08218 Citrate lyase ligase C-terminal domain NJ56_12650 PF06857 Malonate decarboxylase delta subunit (MdcD) NJ56_12655 PF03328 HpcH/HpaI aldolase/citrate lyase family NJ56_12660 PF04223 Citrate lyase, alpha subunit (CitF) NJ56_12665 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase NJ56_12670 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NJ56_12675 PF00939 Sodium:sulfate symporter transmembrane region NJ56_12680 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NJ56_12680 PF01648 4'-phosphopantetheinyl transferase superfamily NJ56_12695 PF06167 Glucose-regulated metallo-peptidase M90 NJ56_12705 PF14001 YdfZ protein NJ56_12715 PF10777 Inner membrane protein YlaC NJ56_12720 PF08659 KR domain NJ56_12720 PF02801 Beta-ketoacyl synthase, C-terminal domain NJ56_12720 PF08240 Alcohol dehydrogenase GroES-like domain NJ56_12720 PF00109 Beta-ketoacyl synthase, N-terminal domain NJ56_12720 PF14765 Polyketide synthase dehydratase NJ56_12720 PF00550 Phosphopantetheine attachment site NJ56_12720 PF00698 Acyl transferase domain NJ56_12720 PF16197 Ketoacyl-synthetase C-terminal extension NJ56_12720 PF00107 Zinc-binding dehydrogenase NJ56_12725 PF16353 Domain of unknown function(DUF4981) NJ56_12725 PF00703 Glycosyl hydrolases family 2 NJ56_12725 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NJ56_12725 PF02837 Glycosyl hydrolases family 2, sugar binding domain NJ56_12725 PF02929 Beta galactosidase small chain NJ56_12730 PF00356 Bacterial regulatory proteins, lacI family NJ56_12740 PF00313 'Cold-shock' DNA-binding domain NJ56_12745 PF10781 Dextransucrase DSRB NJ56_12750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJ56_12750 PF00672 HAMP domain NJ56_12750 PF02203 Tar ligand binding domain homologue NJ56_12755 PF02308 MgtC family NJ56_12765 PF00582 Universal stress protein family NJ56_12775 PF05247 Flagellar transcriptional activator (FlhD) NJ56_12780 PF05280 Flagellar transcriptional activator (FlhC) NJ56_12785 PF01618 MotA/TolQ/ExbB proton channel family NJ56_12790 PF00691 OmpA family NJ56_12790 PF13677 Membrane MotB of proton-channel complex MotA/MotB NJ56_12795 PF01627 Hpt domain NJ56_12795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_12795 PF02895 Signal transducing histidine kinase, homodimeric domain NJ56_12795 PF01584 CheW-like domain NJ56_12795 PF09078 CheY binding NJ56_12800 PF01584 CheW-like domain NJ56_12805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJ56_12805 PF00672 HAMP domain NJ56_12805 PF02203 Tar ligand binding domain homologue NJ56_12810 PF02203 Tar ligand binding domain homologue NJ56_12810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJ56_12810 PF00672 HAMP domain NJ56_12815 PF03705 CheR methyltransferase, all-alpha domain NJ56_12815 PF01739 CheR methyltransferase, SAM binding domain NJ56_12820 PF01339 CheB methylesterase NJ56_12820 PF00072 Response regulator receiver domain NJ56_12825 PF00072 Response regulator receiver domain NJ56_12830 PF04344 Chemotaxis phosphatase, CheZ NJ56_12860 PF00419 Fimbrial protein NJ56_12870 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NJ56_12870 PF02753 Pili assembly chaperone PapD, C-terminal domain NJ56_12875 PF00577 Outer membrane usher protein NJ56_12875 PF13953 PapC C-terminal domain NJ56_12875 PF13954 PapC N-terminal domain NJ56_12885 PF00419 Fimbrial protein NJ56_12895 PF00196 Bacterial regulatory proteins, luxR family NJ56_12905 PF01312 FlhB HrpN YscU SpaS Family NJ56_12910 PF00771 FHIPEP family NJ56_12915 PF06366 Flagellar protein FlhE NJ56_12920 PF05130 FlgN protein NJ56_12925 PF04316 Anti-sigma-28 factor, FlgM NJ56_12930 PF17656 FlgA N-terminal domain NJ56_12930 PF13144 Chaperone for flagella basal body P-ring formation NJ56_12935 PF00460 Flagella basal body rod protein NJ56_12940 PF00460 Flagella basal body rod protein NJ56_12940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJ56_12945 PF03963 Flagellar hook capping protein - N-terminal region NJ56_12945 PF13860 FlgD Ig-like domain NJ56_12945 PF13861 FlgD Tudor-like domain NJ56_12950 PF00460 Flagella basal body rod protein NJ56_12950 PF07559 Flagellar basal body protein FlaE NJ56_12950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJ56_12955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJ56_12955 PF00460 Flagella basal body rod protein NJ56_12960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJ56_12960 PF00460 Flagella basal body rod protein NJ56_12965 PF02107 Flagellar L-ring protein NJ56_12970 PF02119 Flagellar P-ring protein NJ56_12975 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NJ56_12975 PF10135 Rod binding protein NJ56_12980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJ56_12980 PF00460 Flagella basal body rod protein NJ56_12985 PF00669 Bacterial flagellin N-terminal helical region NJ56_12990 PF01311 Bacterial export proteins, family 1 NJ56_12995 PF01313 Bacterial export proteins, family 3 NJ56_13000 PF00813 FliP family NJ56_13005 PF04347 Flagellar biosynthesis protein, FliO NJ56_13010 PF16973 Flagellar motor switch protein FliN N-terminal NJ56_13010 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NJ56_13015 PF02154 Flagellar motor switch protein FliM NJ56_13015 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NJ56_13020 PF03748 Flagellar basal body-associated protein FliL NJ56_13030 PF02120 Flagellar hook-length control protein FliK NJ56_13035 PF02050 Flagellar FliJ protein NJ56_13040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJ56_13040 PF18269 T3SS EscN ATPase C-terminal domain NJ56_13045 PF02108 Flagellar assembly protein FliH NJ56_13050 PF01706 FliG C-terminal domain NJ56_13050 PF14841 FliG middle domain NJ56_13050 PF14842 FliG N-terminal domain NJ56_13055 PF08345 Flagellar M-ring protein C-terminal NJ56_13055 PF01514 Secretory protein of YscJ/FliF family NJ56_13060 PF02049 Flagellar hook-basal body complex protein FliE NJ56_13070 PF01223 DNA/RNA non-specific endonuclease NJ56_13075 PF07885 Ion channel NJ56_13075 PF02254 TrkA-N domain NJ56_13080 PF01966 HD domain NJ56_13085 PF12833 Helix-turn-helix domain NJ56_13090 PF05400 Flagellar protein FliT NJ56_13095 PF02561 Flagellar protein FliS NJ56_13100 PF02465 Flagellar hook-associated protein 2 N-terminus NJ56_13100 PF07195 Flagellar hook-associated protein 2 C-terminus NJ56_13100 PF07196 Flagellin hook IN motif NJ56_13105 PF00669 Bacterial flagellin N-terminal helical region NJ56_13105 PF08884 Flagellin D3 domain NJ56_13105 PF00700 Bacterial flagellin C-terminal helical region NJ56_13110 PF00700 Bacterial flagellin C-terminal helical region NJ56_13110 PF00669 Bacterial flagellin N-terminal helical region NJ56_13110 PF08884 Flagellin D3 domain NJ56_13115 PF00669 Bacterial flagellin N-terminal helical region NJ56_13115 PF00700 Bacterial flagellin C-terminal helical region NJ56_13115 PF08884 Flagellin D3 domain NJ56_13120 PF04545 Sigma-70, region 4 NJ56_13120 PF04542 Sigma-70 region 2 NJ56_13120 PF04539 Sigma-70 region 3 NJ56_13125 PF02899 Phage integrase, N-terminal SAM-like domain NJ56_13130 PF00291 Pyridoxal-phosphate dependent enzyme NJ56_13150 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NJ56_13150 PF14850 DNA-binding domain of Proline dehydrogenase NJ56_13150 PF00171 Aldehyde dehydrogenase family NJ56_13150 PF01619 Proline dehydrogenase NJ56_13155 PF00474 Sodium:solute symporter family NJ56_13160 PF00486 Transcriptional regulatory protein, C terminal NJ56_13160 PF18500 CadC C-terminal domain 1 NJ56_13165 PF13520 Amino acid permease NJ56_13170 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain NJ56_13170 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NJ56_13170 PF01276 Orn/Lys/Arg decarboxylase, major domain NJ56_13175 PF00324 Amino acid permease NJ56_13185 PF00589 Phage integrase family NJ56_13195 PF10769 Protein of unknown function (DUF2594) NJ56_13200 PF00196 Bacterial regulatory proteins, luxR family NJ56_13200 PF00072 Response regulator receiver domain NJ56_13205 PF01541 GIY-YIG catalytic domain NJ56_13205 PF02151 UvrB/uvrC motif NJ56_13205 PF08459 UvrC Helix-hairpin-helix N-terminal NJ56_13210 PF01066 CDP-alcohol phosphatidyltransferase NJ56_13230 PF04606 Ogr/Delta-like zinc finger NJ56_13270 PF02413 Caudovirales tail fibre assembly protein, lambda gpK NJ56_13275 PF07484 Phage Tail Collar Domain NJ56_13305 PF06114 IrrE N-terminal-like domain NJ56_13390 PF05840 Bacteriophage replication gene A protein (GPA) NJ56_13410 PF06892 Phage regulatory protein CII (CP76) NJ56_13420 PF16452 Bacteriophage CI repressor C-terminal domain NJ56_13420 PF07022 Bacteriophage CI repressor helix-turn-helix domain NJ56_13425 PF03120 NAD-dependent DNA ligase OB-fold domain NJ56_13425 PF12826 Helix-hairpin-helix motif NJ56_13425 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NJ56_13425 PF01653 NAD-dependent DNA ligase adenylation domain NJ56_13425 PF00533 BRCA1 C Terminus (BRCT) domain NJ56_13430 PF00589 Phage integrase family NJ56_13430 PF02899 Phage integrase, N-terminal SAM-like domain NJ56_13485 PF02086 D12 class N6 adenine-specific DNA methyltransferase NJ56_13540 PF13333 Integrase core domain NJ56_13540 PF13276 HTH-like domain NJ56_13540 PF00665 Integrase core domain NJ56_13545 PF02203 Tar ligand binding domain homologue NJ56_13545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJ56_13545 PF00672 HAMP domain NJ56_13555 PF00005 ABC transporter NJ56_13560 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_13575 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NJ56_13575 PF00034 Cytochrome c NJ56_13590 PF13673 Acetyltransferase (GNAT) domain NJ56_13620 PF04960 Glutaminase NJ56_13625 PF13520 Amino acid permease NJ56_13630 PF00282 Pyridoxal-dependent decarboxylase conserved domain NJ56_13635 PF00849 RNA pseudouridylate synthase NJ56_13650 PF13520 Amino acid permease NJ56_13665 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NJ56_13675 PF01479 S4 domain NJ56_13675 PF00849 RNA pseudouridylate synthase NJ56_13685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NJ56_13690 PF02378 Phosphotransferase system, EIIC NJ56_13695 PF00232 Glycosyl hydrolase family 1 NJ56_13700 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NJ56_13705 PF07883 Cupin domain NJ56_13705 PF12833 Helix-turn-helix domain NJ56_13710 PF04794 YdjC-like protein NJ56_13735 PF00313 'Cold-shock' DNA-binding domain NJ56_13740 PF00313 'Cold-shock' DNA-binding domain NJ56_13745 PF00313 'Cold-shock' DNA-binding domain NJ56_13750 PF08241 Methyltransferase domain NJ56_13765 PF01820 D-ala D-ala ligase N-terminus NJ56_13765 PF07478 D-ala D-ala ligase C-terminus NJ56_13770 PF06411 HdeA/HdeB family NJ56_13780 PF03372 Endonuclease/Exonuclease/phosphatase family NJ56_13785 PF00563 EAL domain NJ56_13785 PF01590 GAF domain NJ56_13785 PF00990 Diguanylate cyclase, GGDEF domain NJ56_13785 PF00360 Phytochrome region NJ56_13795 PF00005 ABC transporter NJ56_13795 PF00664 ABC transporter transmembrane region NJ56_13800 PF13520 Amino acid permease NJ56_13805 PF12833 Helix-turn-helix domain NJ56_13810 PF10964 Protein of unknown function (DUF2766) NJ56_13815 PF13996 YobH-like protein NJ56_13820 PF13998 MgrB protein NJ56_13825 PF13974 YebO-like protein NJ56_13840 PF00324 Amino acid permease NJ56_13845 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP NJ56_13850 PF10736 Protein of unknown function (DUF2627) NJ56_13855 PF00313 'Cold-shock' DNA-binding domain NJ56_13865 PF00905 Penicillin binding protein transpeptidase domain NJ56_13865 PF03717 Penicillin-binding Protein dimerisation domain NJ56_13870 PF13847 Methyltransferase domain NJ56_13890 PF07690 Major Facilitator Superfamily NJ56_13895 PF00550 Phosphopantetheine attachment site NJ56_13895 PF00501 AMP-binding enzyme NJ56_13895 PF13193 AMP-binding enzyme C-terminal domain NJ56_13895 PF00668 Condensation domain NJ56_13900 PF05199 GMC oxidoreductase NJ56_13900 PF00732 GMC oxidoreductase NJ56_13910 PF02770 Acyl-CoA dehydrogenase, middle domain NJ56_13910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NJ56_13910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NJ56_13925 PF02441 Flavoprotein NJ56_13930 PF02659 Putative manganese efflux pump NJ56_13935 PF06173 Protein of unknown function (DUF986) NJ56_13940 PF03613 PTS system mannose/fructose/sorbose family IID component NJ56_13945 PF03609 PTS system sorbose-specific iic component NJ56_13950 PF03610 PTS system fructose IIA component NJ56_13950 PF03830 PTS system sorbose subfamily IIB component NJ56_13955 PF03471 Transporter associated domain NJ56_13955 PF03741 Integral membrane protein TerC family NJ56_13960 PF03315 Serine dehydratase beta chain NJ56_13960 PF03313 Serine dehydratase alpha chain NJ56_13965 PF00293 NUDIX domain NJ56_13970 PF00425 chorismate binding enzyme NJ56_13970 PF04715 Anthranilate synthase component I, N terminal region NJ56_13975 PF03701 Uncharacterised protein family (UPF0181) NJ56_13980 PF02222 ATP-grasp domain NJ56_13985 PF00271 Helicase conserved C-terminal domain NJ56_13985 PF03880 DbpA RNA binding domain NJ56_13985 PF00270 DEAD/DEAH box helicase NJ56_13990 PF07130 YebG protein NJ56_14000 PF13995 YebF-like protein NJ56_14005 PF00326 Prolyl oligopeptidase family NJ56_14005 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NJ56_14010 PF00929 Exonuclease NJ56_14015 PF00561 alpha/beta hydrolase fold NJ56_14020 PF06440 DNA polymerase III, theta subunit NJ56_14025 PF00210 Ferritin-like domain NJ56_14030 PF04234 CopC domain NJ56_14035 PF05425 Copper resistance protein D NJ56_14040 PF10709 Protein of unknown function (DUF2511) NJ56_14050 PF00144 Beta-lactamase NJ56_14070 PF10753 Toxin GhoT_OrtT NJ56_14075 PF03783 Curli production assembly/transport component CsgG NJ56_14085 PF05643 Putative bacterial lipoprotein (DUF799) NJ56_14100 PF07351 Protein of unknown function (DUF1480) NJ56_14105 PF00563 EAL domain NJ56_14105 PF01590 GAF domain NJ56_14105 PF00360 Phytochrome region NJ56_14105 PF00990 Diguanylate cyclase, GGDEF domain NJ56_14110 PF02470 MlaD protein NJ56_14115 PF04403 Paraquat-inducible protein A NJ56_14120 PF13185 GAF domain NJ56_14125 PF04352 ProQ/FINO family NJ56_14125 PF17516 ProQ C-terminal domain NJ56_14130 PF00595 PDZ domain NJ56_14130 PF03572 Peptidase family S41 NJ56_14130 PF17804 Tail specific protease N-terminal domain NJ56_14130 PF11818 C-terminal domain of tail specific protease (DUF3340) NJ56_14135 PF01435 Peptidase family M48 NJ56_14145 PF07690 Major Facilitator Superfamily NJ56_14150 PF01614 Bacterial transcriptional regulator NJ56_14150 PF09339 IclR helix-turn-helix domain NJ56_14155 PF01510 N-acetylmuramoyl-L-alanine amidase NJ56_14165 PF04307 LexA-binding, inner membrane-associated putative hydrolase NJ56_14170 PF13419 Haloacid dehalogenase-like hydrolase NJ56_14175 PF14002 YniB-like protein NJ56_14185 PF00950 ABC 3 transport family NJ56_14190 PF00950 ABC 3 transport family NJ56_14195 PF00005 ABC transporter NJ56_14200 PF01297 Zinc-uptake complex component A periplasmic NJ56_14205 PF01464 Transglycosylase SLT domain NJ56_14210 PF01914 MarC family integral membrane protein NJ56_14245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NJ56_14245 PF03129 Anticodon binding domain NJ56_14245 PF02824 TGS domain NJ56_14245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NJ56_14250 PF05198 Translation initiation factor IF-3, N-terminal domain NJ56_14250 PF00707 Translation initiation factor IF-3, C-terminal domain NJ56_14255 PF01632 Ribosomal protein L35 NJ56_14260 PF00453 Ribosomal protein L20 NJ56_14265 PF01409 tRNA synthetases class II core domain (F) NJ56_14265 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NJ56_14270 PF03484 tRNA synthetase B5 domain NJ56_14270 PF03483 B3/4 domain NJ56_14270 PF03147 Ferredoxin-fold anticodon binding domain NJ56_14270 PF01588 Putative tRNA binding domain NJ56_14270 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NJ56_14275 PF00216 Bacterial DNA-binding protein NJ56_14280 PF05154 TM2 domain NJ56_14295 PF02661 Fic/DOC family NJ56_14315 PF00589 Phage integrase family NJ56_14315 PF02899 Phage integrase, N-terminal SAM-like domain NJ56_14320 PF01032 FecCD transport family NJ56_14325 PF00005 ABC transporter NJ56_14330 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NJ56_14335 PF00535 Glycosyl transferase family 2 NJ56_14340 PF00551 Formyl transferase NJ56_14340 PF02911 Formyl transferase, C-terminal domain NJ56_14340 PF01370 NAD dependent epimerase/dehydratase family NJ56_14345 PF01522 Polysaccharide deacetylase NJ56_14350 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NJ56_14355 PF00892 EamA-like transporter family NJ56_14365 PF00877 NlpC/P60 family NJ56_14370 PF10437 Bacterial lipoate protein ligase C-terminus NJ56_14370 PF03099 Biotin/lipoate A/B protein ligase family NJ56_14375 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NJ56_14380 PF00005 ABC transporter NJ56_14385 PF01032 FecCD transport family NJ56_14390 PF01497 Periplasmic binding protein NJ56_14395 PF05171 Haemin-degrading HemS.ChuX domain NJ56_14400 PF07715 TonB-dependent Receptor Plug Domain NJ56_14400 PF00593 TonB dependent receptor NJ56_14405 PF10636 Hemin uptake protein hemP NJ56_14410 PF00793 DAHP synthetase I family NJ56_14415 PF03618 Kinase/pyrophosphorylase NJ56_14420 PF02896 PEP-utilising enzyme, TIM barrel domain NJ56_14420 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NJ56_14420 PF00391 PEP-utilising enzyme, mobile domain NJ56_14430 PF01594 AI-2E family transporter NJ56_14435 PF02913 FAD linked oxidases, C-terminal domain NJ56_14435 PF01565 FAD binding domain NJ56_14435 PF13183 4Fe-4S dicluster domain NJ56_14440 PF03061 Thioesterase superfamily NJ56_14445 PF01521 Iron-sulphur cluster biosynthesis NJ56_14450 PF01458 Uncharacterized protein family (UPF0051) NJ56_14455 PF00005 ABC transporter NJ56_14460 PF01458 Uncharacterized protein family (UPF0051) NJ56_14465 PF00266 Aminotransferase class-V NJ56_14470 PF02657 Fe-S metabolism associated domain NJ56_14475 PF17969 L,D-transpeptidase C-terminal domain NJ56_14475 PF01476 LysM domain NJ56_14475 PF03734 L,D-transpeptidase catalytic domain NJ56_14480 PF04728 Lipoprotein leucine-zipper NJ56_14485 PF00224 Pyruvate kinase, barrel domain NJ56_14485 PF02887 Pyruvate kinase, alpha/beta domain NJ56_14505 PF01554 MatE NJ56_14510 PF00677 Lumazine binding domain NJ56_14520 PF07690 Major Facilitator Superfamily NJ56_14525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_14525 PF03466 LysR substrate binding domain NJ56_14530 PF00356 Bacterial regulatory proteins, lacI family NJ56_14540 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NJ56_14540 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NJ56_14545 PF00877 NlpC/P60 family NJ56_14550 PF00462 Glutaredoxin NJ56_14555 PF00929 Exonuclease NJ56_14560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NJ56_14565 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NJ56_14570 PF16925 Tetracyclin repressor-like, C-terminal domain NJ56_14570 PF00440 Bacterial regulatory proteins, tetR family NJ56_14575 PF08019 Phosphoethanolamine transferase EptA/EptB NJ56_14575 PF00884 Sulfatase NJ56_14580 PF06945 Protein of unknown function (DUF1289) NJ56_14585 PF00248 Aldo/keto reductase family NJ56_14595 PF01047 MarR family NJ56_14600 PF05433 Glycine zipper 2TM domain NJ56_14605 PF03702 Anhydro-N-acetylmuramic acid kinase NJ56_14610 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NJ56_14610 PF01243 Pyridoxamine 5'-phosphate oxidase NJ56_14615 PF00579 tRNA synthetases class I (W and Y) NJ56_14615 PF01479 S4 domain NJ56_14620 PF08543 Phosphomethylpyrimidine kinase NJ56_14625 PF00043 Glutathione S-transferase, C-terminal domain NJ56_14625 PF02798 Glutathione S-transferase, N-terminal domain NJ56_14630 PF11656 YjbD family (DUF3811) NJ56_14640 PF04893 Yip1 domain NJ56_14650 PF01556 DnaJ C terminal domain NJ56_14650 PF00226 DnaJ domain NJ56_14660 PF00854 POT family NJ56_14670 PF00005 ABC transporter NJ56_14675 PF00005 ABC transporter NJ56_14675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJ56_14680 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_14680 PF12911 N-terminal TM domain of oligopeptide transport permease C NJ56_14685 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_14690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJ56_14700 PF02917 Pertussis toxin, subunit 1 NJ56_14710 PF00158 Sigma-54 interaction domain NJ56_14710 PF02954 Bacterial regulatory protein, Fis family NJ56_14715 PF04012 PspA/IM30 family NJ56_14720 PF06667 Phage shock protein B NJ56_14725 PF04024 PspC domain NJ56_14730 PF09584 Phage shock protein PspD (Phageshock_PspD) NJ56_14735 PF04317 YcjX-like family, DUF463 NJ56_14740 PF05128 Domain of unknown function (DUF697) NJ56_14755 PF00158 Sigma-54 interaction domain NJ56_14755 PF18024 Helix-turn-helix domain NJ56_14760 PF08534 Redoxin NJ56_14765 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NJ56_14765 PF13378 Enolase C-terminal domain-like NJ56_14770 PF00246 Zinc carboxypeptidase NJ56_14775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJ56_14780 PF01544 CorA-like Mg2+ transporter protein NJ56_14785 PF01171 PP-loop family NJ56_14790 PF10371 Domain of unknown function NJ56_14790 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NJ56_14790 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NJ56_14790 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NJ56_14790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJ56_14795 PF00893 Small Multidrug Resistance protein NJ56_14800 PF02308 MgtC family NJ56_14805 PF03891 Domain of unknown function (DUF333) NJ56_14810 PF03724 META domain NJ56_14815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJ56_14815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NJ56_14820 PF11739 Dicarboxylate transport NJ56_14830 PF13617 YnbE-like lipoprotein NJ56_14835 PF07027 Protein of unknown function (DUF1318) NJ56_14840 PF02525 Flavodoxin-like fold NJ56_14850 PF00270 DEAD/DEAH box helicase NJ56_14850 PF11898 Domain of unknown function (DUF3418) NJ56_14850 PF04408 Helicase associated domain (HA2) NJ56_14850 PF00271 Helicase conserved C-terminal domain NJ56_14850 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NJ56_14855 PF00089 Trypsin NJ56_14860 PF06392 Acid shock protein repeat NJ56_14865 PF01161 Phosphatidylethanolamine-binding protein NJ56_14870 PF12833 Helix-turn-helix domain NJ56_14880 PF00080 Copper/zinc superoxide dismutase (SODC) NJ56_14885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_14885 PF00672 HAMP domain NJ56_14885 PF00512 His Kinase A (phospho-acceptor) domain NJ56_14890 PF00072 Response regulator receiver domain NJ56_14890 PF00486 Transcriptional regulatory protein, C terminal NJ56_14900 PF13520 Amino acid permease NJ56_14905 PF07338 Protein of unknown function (DUF1471) NJ56_14910 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NJ56_14910 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NJ56_14910 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NJ56_14915 PF02233 NAD(P) transhydrogenase beta subunit NJ56_14920 PF01261 Xylose isomerase-like TIM barrel NJ56_14925 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NJ56_14930 PF00596 Class II Aldolase and Adducin N-terminal domain NJ56_14935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NJ56_14940 PF03611 PTS system sugar-specific permease component NJ56_14945 PF08220 DeoR-like helix-turn-helix domain NJ56_14945 PF00455 DeoR C terminal sensor domain NJ56_14955 PF00582 Universal stress protein family NJ56_14960 PF13545 Crp-like helix-turn-helix domain NJ56_14960 PF00027 Cyclic nucleotide-binding domain NJ56_14965 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NJ56_14965 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NJ56_14970 PF06445 GyrI-like small molecule binding domain NJ56_14980 PF13419 Haloacid dehalogenase-like hydrolase NJ56_15020 PF01048 Phosphorylase superfamily NJ56_15020 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus NJ56_15045 PF01510 N-acetylmuramoyl-L-alanine amidase NJ56_15050 PF00106 short chain dehydrogenase NJ56_15055 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NJ56_15060 PF06932 Protein of unknown function (DUF1283) NJ56_15065 PF06649 Protein of unknown function (DUF1161) NJ56_15070 PF00654 Voltage gated chloride channel NJ56_15080 PF00480 ROK family NJ56_15085 PF05472 DNA replication terminus site-binding protein (Ter protein) NJ56_15090 PF00206 Lyase NJ56_15090 PF10415 Fumarase C C-terminus NJ56_15095 PF01238 Phosphomannose isomerase type I NJ56_15100 PF06097 Bacterial protein of unknown function (DUF945) NJ56_15105 PF00962 Adenosine/AMP deaminase NJ56_15110 PF13593 SBF-like CPA transporter family (DUF4137) NJ56_15115 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NJ56_15115 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NJ56_15120 PF03848 Tellurite resistance protein TehB NJ56_15120 PF09313 Domain of unknown function (DUF1971) NJ56_15125 PF01268 Formate--tetrahydrofolate ligase NJ56_15130 PF10754 Protein of unknown function (DUF2569) NJ56_15135 PF02508 Rnf-Nqr subunit, membrane protein NJ56_15140 PF04060 Putative Fe-S cluster NJ56_15145 PF10531 SLBB domain NJ56_15145 PF13375 RnfC Barrel sandwich hybrid domain NJ56_15145 PF13237 4Fe-4S dicluster domain NJ56_15145 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NJ56_15150 PF12833 Helix-turn-helix domain NJ56_15150 PF06445 GyrI-like small molecule binding domain NJ56_15155 PF03116 NQR2, RnfD, RnfE family NJ56_15160 PF04205 FMN-binding domain NJ56_15165 PF02508 Rnf-Nqr subunit, membrane protein NJ56_15170 PF00633 Helix-hairpin-helix motif NJ56_15170 PF10576 Iron-sulfur binding domain of endonuclease III NJ56_15170 PF00730 HhH-GPD superfamily base excision DNA repair protein NJ56_15175 PF08206 Ribonuclease B OB domain NJ56_15175 PF00773 RNB domain NJ56_15175 PF00575 S1 RNA binding domain NJ56_15180 PF08447 PAS fold NJ56_15180 PF05231 MASE1 NJ56_15180 PF00990 Diguanylate cyclase, GGDEF domain NJ56_15180 PF13426 PAS domain NJ56_15180 PF08448 PAS fold NJ56_15180 PF00563 EAL domain NJ56_15185 PF00923 Transaldolase/Fructose-6-phosphate aldolase NJ56_15190 PF05433 Glycine zipper 2TM domain NJ56_15195 PF01253 Translation initiation factor SUI1 NJ56_15200 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NJ56_15205 PF07338 Protein of unknown function (DUF1471) NJ56_15215 PF18073 Rubredoxin metal binding domain NJ56_15220 PF06305 Lipopolysaccharide assembly protein A domain NJ56_15225 PF01569 PAP2 superfamily NJ56_15230 PF00925 GTP cyclohydrolase II NJ56_15235 PF00330 Aconitase family (aconitate hydratase) NJ56_15235 PF00694 Aconitase C-terminal domain NJ56_15250 PF03466 LysR substrate binding domain NJ56_15250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_15255 PF01131 DNA topoisomerase NJ56_15255 PF08272 Topoisomerase I zinc-ribbon-like NJ56_15255 PF01751 Toprim domain NJ56_15255 PF01396 Topoisomerase DNA binding C4 zinc finger NJ56_15265 PF10692 Protein of unknown function (DUF2498) NJ56_15270 PF08496 Peptidase family S49 N-terminal NJ56_15270 PF01343 Peptidase family S49 NJ56_15275 PF00106 short chain dehydrogenase NJ56_15280 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NJ56_15285 PF00849 RNA pseudouridylate synthase NJ56_15285 PF01479 S4 domain NJ56_15290 PF01300 Telomere recombination NJ56_15295 PF02811 PHP domain NJ56_15300 PF04715 Anthranilate synthase component I, N terminal region NJ56_15300 PF00425 chorismate binding enzyme NJ56_15305 PF00117 Glutamine amidotransferase class-I NJ56_15310 PF00591 Glycosyl transferase family, a/b domain NJ56_15310 PF02885 Glycosyl transferase family, helical bundle domain NJ56_15315 PF00218 Indole-3-glycerol phosphate synthase NJ56_15315 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NJ56_15320 PF00291 Pyridoxal-phosphate dependent enzyme NJ56_15325 PF00290 Tryptophan synthase alpha chain NJ56_15335 PF03922 OmpW family NJ56_15340 PF03692 Putative zinc- or iron-chelating domain NJ56_15350 PF00916 Sulfate permease family NJ56_15350 PF01740 STAS domain NJ56_15355 PF04279 Intracellular septation protein A NJ56_15360 PF03061 Thioesterase superfamily NJ56_15365 PF03544 Gram-negative bacterial TonB protein C-terminal NJ56_15385 PF13953 PapC C-terminal domain NJ56_15385 PF13954 PapC N-terminal domain NJ56_15385 PF00577 Outer membrane usher protein NJ56_15390 PF02753 Pili assembly chaperone PapD, C-terminal domain NJ56_15390 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NJ56_15400 PF00486 Transcriptional regulatory protein, C terminal NJ56_15415 PF03795 YCII-related domain NJ56_15435 PF13396 Phospholipase_D-nuclease N-terminal NJ56_15435 PF13091 PLD-like domain NJ56_15440 PF04269 Protein of unknown function, DUF440 NJ56_15445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJ56_15445 PF00005 ABC transporter NJ56_15450 PF00005 ABC transporter NJ56_15450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJ56_15455 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_15455 PF12911 N-terminal TM domain of oligopeptide transport permease C NJ56_15460 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_15465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJ56_15470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJ56_15480 PF01914 MarC family integral membrane protein NJ56_15490 PF00465 Iron-containing alcohol dehydrogenase NJ56_15490 PF00171 Aldehyde dehydrogenase family NJ56_15495 PF00265 Thymidine kinase NJ56_15500 PF00816 H-NS histone family NJ56_15505 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NJ56_15505 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NJ56_15505 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NJ56_15510 PF00072 Response regulator receiver domain NJ56_15515 PF01734 Patatin-like phospholipase NJ56_15520 PF02810 SEC-C motif NJ56_15525 PF00551 Formyl transferase NJ56_15525 PF01842 ACT domain NJ56_15545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_15545 PF03466 LysR substrate binding domain NJ56_15555 PF03372 Endonuclease/Exonuclease/phosphatase family NJ56_15560 PF00293 NUDIX domain NJ56_15565 PF07383 Protein of unknown function (DUF1496) NJ56_15570 PF01131 DNA topoisomerase NJ56_15570 PF01751 Toprim domain NJ56_15575 PF00586 AIR synthase related protein, N-terminal domain NJ56_15575 PF02769 AIR synthase related protein, C-terminal domain NJ56_15580 PF00881 Nitroreductase family NJ56_15585 PF01343 Peptidase family S49 NJ56_15590 PF00710 Asparaginase, N-terminal NJ56_15590 PF17763 Glutaminase/Asparaginase C-terminal domain NJ56_15595 PF00857 Isochorismatase family NJ56_15600 PF07023 Protein of unknown function (DUF1315) NJ56_15605 PF01641 SelR domain NJ56_15610 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NJ56_15610 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NJ56_15615 PF01263 Aldose 1-epimerase NJ56_15620 PF00884 Sulfatase NJ56_15625 PF00884 Sulfatase NJ56_15630 PF06629 MltA-interacting protein MipA NJ56_15640 PF08298 PrkA AAA domain NJ56_15640 PF06798 PrkA serine protein kinase C-terminal domain NJ56_15645 PF04285 Protein of unknown function (DUF444) NJ56_15650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJ56_15650 PF00205 Thiamine pyrophosphate enzyme, central domain NJ56_15650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NJ56_15655 PF03306 Alpha-acetolactate decarboxylase NJ56_15660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_15660 PF03466 LysR substrate binding domain NJ56_15665 PF00563 EAL domain NJ56_15665 PF13426 PAS domain NJ56_15665 PF00990 Diguanylate cyclase, GGDEF domain NJ56_15675 PF07690 Major Facilitator Superfamily NJ56_15680 PF01168 Alanine racemase, N-terminal domain NJ56_15680 PF00842 Alanine racemase, C-terminal domain NJ56_15685 PF01266 FAD dependent oxidoreductase NJ56_15690 PF04293 SpoVR like protein NJ56_15695 PF07840 FadR C-terminal domain NJ56_15695 PF00392 Bacterial regulatory proteins, gntR family NJ56_15700 PF06450 Bacterial Na+/H+ antiporter B (NhaB) NJ56_15705 PF02600 Disulfide bond formation protein DsbB NJ56_15720 PF03692 Putative zinc- or iron-chelating domain NJ56_15725 PF01557 Fumarylacetoacetate (FAA) hydrolase family NJ56_15730 PF05166 YcgL domain NJ56_15735 PF03775 Septum formation inhibitor MinC, C-terminal domain NJ56_15735 PF05209 Septum formation inhibitor MinC, N-terminal domain NJ56_15740 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NJ56_15745 PF03776 Septum formation topological specificity factor MinE NJ56_15750 PF00570 HRDC domain NJ56_15750 PF01612 3'-5' exonuclease NJ56_15755 PF00501 AMP-binding enzyme NJ56_15755 PF13193 AMP-binding enzyme C-terminal domain NJ56_15760 PF03843 Outer membrane lipoprotein Slp family NJ56_15765 PF00814 Glycoprotease family NJ56_15770 PF13307 Helicase C-terminal domain NJ56_15770 PF04851 Type III restriction enzyme, res subunit NJ56_15775 PF01042 Endoribonuclease L-PSP NJ56_15780 PF00893 Small Multidrug Resistance protein NJ56_15785 PF00893 Small Multidrug Resistance protein NJ56_15790 PF01081 KDPG and KHG aldolase NJ56_15795 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NJ56_15795 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NJ56_15800 PF01418 Helix-turn-helix domain, rpiR family NJ56_15800 PF01380 SIS domain NJ56_15805 PF02887 Pyruvate kinase, alpha/beta domain NJ56_15805 PF00224 Pyruvate kinase, barrel domain NJ56_15810 PF03279 Bacterial lipid A biosynthesis acyltransferase NJ56_15815 PF01476 LysM domain NJ56_15815 PF01551 Peptidase family M23 NJ56_15815 PF08525 Opacity-associated protein A N-terminal motif NJ56_15820 PF01297 Zinc-uptake complex component A periplasmic NJ56_15825 PF00005 ABC transporter NJ56_15830 PF00950 ABC 3 transport family NJ56_15835 PF00854 POT family NJ56_15840 PF05496 Holliday junction DNA helicase RuvB P-loop domain NJ56_15840 PF05491 RuvB C-terminal winged helix domain NJ56_15840 PF17864 RuvB AAA lid domain NJ56_15845 PF01330 RuvA N terminal domain NJ56_15845 PF07499 RuvA, C-terminal domain NJ56_15850 PF02075 Crossover junction endodeoxyribonuclease RuvC NJ56_15855 PF01709 Transcriptional regulator NJ56_15860 PF00293 NUDIX domain NJ56_15865 PF00152 tRNA synthetases class II (D, K and N) NJ56_15865 PF02938 GAD domain NJ56_15865 PF01336 OB-fold nucleic acid binding domain NJ56_15875 PF01904 Protein of unknown function DUF72 NJ56_15880 PF01124 MAPEG family NJ56_15885 PF13649 Methyltransferase domain NJ56_15890 PF08003 Protein of unknown function (DUF1698) NJ56_15895 PF03932 CutC family NJ56_15900 PF06185 YecM protein NJ56_15905 PF05746 DALR anticodon binding domain NJ56_15905 PF00750 tRNA synthetases class I (R) NJ56_15905 PF03485 Arginyl tRNA synthetase N terminal domain NJ56_15915 PF13332 Hemagglutinin repeat NJ56_15915 PF05860 haemagglutination activity domain NJ56_15920 PF17287 POTRA domain NJ56_15920 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NJ56_15920 PF08479 POTRA domain, ShlB-type NJ56_15925 PF03023 Lipid II flippase MurJ NJ56_15930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NJ56_15935 PF04337 Protein of unknown function, DUF480 NJ56_15940 PF13302 Acetyltransferase (GNAT) domain NJ56_15945 PF07690 Major Facilitator Superfamily NJ56_15955 PF07273 Protein of unknown function (DUF1439) NJ56_15960 PF02613 Nitrate reductase delta subunit NJ56_15965 PF02811 PHP domain NJ56_15970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJ56_15975 PF00854 POT family NJ56_15985 PF03009 Glycerophosphoryl diester phosphodiesterase family NJ56_15995 PF00990 Diguanylate cyclase, GGDEF domain NJ56_16000 PF00916 Sulfate permease family NJ56_16000 PF01740 STAS domain NJ56_16005 PF00793 DAHP synthetase I family NJ56_16010 PF13369 Transglutaminase-like superfamily NJ56_16015 PF04247 Invasion gene expression up-regulator, SirB NJ56_16020 PF13847 Methyltransferase domain NJ56_16020 PF17827 PrmC N-terminal domain NJ56_16025 PF00472 RF-1 domain NJ56_16025 PF03462 PCRF domain NJ56_16030 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NJ56_16030 PF01488 Shikimate / quinate 5-dehydrogenase NJ56_16030 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NJ56_16035 PF03550 Outer membrane lipoprotein LolB NJ56_16040 PF08544 GHMP kinases C terminal NJ56_16040 PF00288 GHMP kinases N terminal domain NJ56_16045 PF14572 Phosphoribosyl synthetase-associated domain NJ56_16045 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NJ56_16050 PF10762 Protein of unknown function (DUF2583) NJ56_16055 PF01195 Peptidyl-tRNA hydrolase NJ56_16065 PF06071 Protein of unknown function (DUF933) NJ56_16065 PF01926 50S ribosome-binding GTPase NJ56_16075 PF02954 Bacterial regulatory protein, Fis family NJ56_16075 PF01590 GAF domain NJ56_16075 PF00158 Sigma-54 interaction domain NJ56_16080 PF00586 AIR synthase related protein, N-terminal domain NJ56_16080 PF02769 AIR synthase related protein, C-terminal domain NJ56_16085 PF01924 Hydrogenase formation hypA family NJ56_16090 PF01455 HupF/HypC family NJ56_16095 PF02492 CobW/HypB/UreG, nucleotide-binding domain NJ56_16100 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NJ56_16105 PF11046 Transcriptional repressor of hyc and hyp operons NJ56_16110 PF13247 4Fe-4S dicluster domain NJ56_16115 PF00361 Proton-conducting membrane transporter NJ56_16120 PF00146 NADH dehydrogenase NJ56_16125 PF00374 Nickel-dependent hydrogenase NJ56_16125 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NJ56_16125 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NJ56_16130 PF12838 4Fe-4S dicluster domain NJ56_16135 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NJ56_16140 PF07450 Formate hydrogenlyase maturation protein HycH NJ56_16145 PF01750 Hydrogenase maturation protease NJ56_16150 PF12800 4Fe-4S binding domain NJ56_16150 PF13247 4Fe-4S dicluster domain NJ56_16155 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NJ56_16155 PF01568 Molydopterin dinucleotide binding domain NJ56_16155 PF00384 Molybdopterin oxidoreductase NJ56_16160 PF07503 HypF finger NJ56_16160 PF01300 Telomere recombination NJ56_16160 PF00708 Acylphosphatase NJ56_16160 PF17788 HypF Kae1-like domain NJ56_16165 PF03824 High-affinity nickel-transport protein NJ56_16175 PF03466 LysR substrate binding domain NJ56_16175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_16180 PF05962 HutD NJ56_16185 PF01979 Amidohydrolase family NJ56_16190 PF00392 Bacterial regulatory proteins, gntR family NJ56_16190 PF07702 UTRA domain NJ56_16195 PF01979 Amidohydrolase family NJ56_16205 PF00267 Gram-negative porin NJ56_16210 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NJ56_16215 PF04996 Succinylarginine dihydrolase NJ56_16220 PF00171 Aldehyde dehydrogenase family NJ56_16225 PF04958 Arginine N-succinyltransferase beta subunit NJ56_16230 PF00202 Aminotransferase class-III NJ56_16235 PF00155 Aminotransferase class I and II NJ56_16235 PF00392 Bacterial regulatory proteins, gntR family NJ56_16240 PF01654 Cytochrome bd terminal oxidase subunit I NJ56_16245 PF02322 Cytochrome bd terminal oxidase subunit II NJ56_16255 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NJ56_16255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_16255 PF07730 Histidine kinase NJ56_16255 PF00672 HAMP domain NJ56_16260 PF08021 Siderophore-interacting FAD-binding domain NJ56_16260 PF04954 Siderophore-interacting protein NJ56_16265 PF01699 Sodium/calcium exchanger protein NJ56_16270 PF02562 PhoH-like protein NJ56_16275 PF02311 AraC-like ligand binding domain NJ56_16275 PF12833 Helix-turn-helix domain NJ56_16290 PF02321 Outer membrane efflux protein NJ56_16295 PF00529 HlyD membrane-fusion protein of T1SS NJ56_16300 PF00005 ABC transporter NJ56_16300 PF00664 ABC transporter transmembrane region NJ56_16305 PF02974 Protease inhibitor Inh NJ56_16310 PF00413 Matrixin NJ56_16310 PF08548 Peptidase M10 serralysin C terminal NJ56_16310 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) NJ56_16315 PF00939 Sodium:sulfate symporter transmembrane region NJ56_16320 PF17203 Single cache domain 3 NJ56_16320 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NJ56_16320 PF00989 PAS fold NJ56_16320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_16325 PF00072 Response regulator receiver domain NJ56_16330 PF03390 2-hydroxycarboxylate transporter family NJ56_16335 PF02203 Tar ligand binding domain homologue NJ56_16335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJ56_16335 PF00672 HAMP domain NJ56_16340 PF01432 Peptidase family M3 NJ56_16345 PF00232 Glycosyl hydrolase family 1 NJ56_16350 PF00765 Autoinducer synthase NJ56_16355 PF03472 Autoinducer binding domain NJ56_16355 PF00196 Bacterial regulatory proteins, luxR family NJ56_16360 PF00180 Isocitrate/isopropylmalate dehydrogenase NJ56_16365 PF00849 RNA pseudouridylate synthase NJ56_16370 PF00293 NUDIX domain NJ56_16380 PF04356 Protein of unknown function (DUF489) NJ56_16385 PF08328 Adenylosuccinate lyase C-terminal NJ56_16385 PF00206 Lyase NJ56_16395 PF00072 Response regulator receiver domain NJ56_16395 PF00486 Transcriptional regulatory protein, C terminal NJ56_16400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJ56_16400 PF08918 PhoQ Sensor NJ56_16405 PF08007 Cupin superfamily protein NJ56_16410 PF01546 Peptidase family M20/M25/M40 NJ56_16410 PF07687 Peptidase dimerisation domain NJ56_16415 PF02146 Sir2 family NJ56_16420 PF00480 ROK family NJ56_16425 PF02687 FtsX-like permease family NJ56_16425 PF12704 MacB-like periplasmic core domain NJ56_16430 PF00005 ABC transporter NJ56_16435 PF12704 MacB-like periplasmic core domain NJ56_16435 PF02687 FtsX-like permease family NJ56_16445 PF00271 Helicase conserved C-terminal domain NJ56_16445 PF17757 UvrB interaction domain NJ56_16445 PF02559 CarD-like/TRCF domain NJ56_16445 PF00270 DEAD/DEAH box helicase NJ56_16445 PF03461 TRCF domain NJ56_16450 PF05433 Glycine zipper 2TM domain NJ56_16455 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJ56_16460 PF05728 Uncharacterised protein family (UPF0227) NJ56_16465 PF00933 Glycosyl hydrolase family 3 N terminal domain NJ56_16470 PF01636 Phosphotransferase enzyme family NJ56_16475 PF13036 Peptidoglycan-synthase activator LpoB NJ56_16475 PF08139 Prokaryotic membrane lipoprotein lipid attachment site NJ56_16480 PF07233 Protein of unknown function (DUF1425) NJ56_16485 PF01230 HIT domain NJ56_16490 PF00367 phosphotransferase system, EIIB NJ56_16490 PF02378 Phosphotransferase system, EIIC NJ56_16495 PF01026 TatD related DNase NJ56_16500 PF09115 DNA polymerase III, delta subunit, C terminal NJ56_16505 PF02223 Thymidylate kinase NJ56_16510 PF02618 YceG-like family NJ56_16515 PF01063 Amino-transferase class IV NJ56_16520 PF02801 Beta-ketoacyl synthase, C-terminal domain NJ56_16520 PF00109 Beta-ketoacyl synthase, N-terminal domain NJ56_16525 PF00550 Phosphopantetheine attachment site NJ56_16535 PF00698 Acyl transferase domain NJ56_16540 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NJ56_16540 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NJ56_16545 PF02504 Fatty acid synthesis protein NJ56_16550 PF01783 Ribosomal L32p protein family NJ56_16555 PF02620 Large ribosomal RNA subunit accumulation protein YceD NJ56_16560 PF02545 Maf-like protein NJ56_16565 PF00849 RNA pseudouridylate synthase NJ56_16565 PF01479 S4 domain NJ56_16575 PF12111 Polyribonucleotide phosphorylase C terminal NJ56_16575 PF10150 Ribonuclease E/G family NJ56_16575 PF00575 S1 RNA binding domain NJ56_16585 PF03992 Antibiotic biosynthesis monooxygenase NJ56_16590 PF01979 Amidohydrolase family NJ56_16595 PF06183 DinI-like family NJ56_16600 PF13991 BssS protein family NJ56_16605 PF01266 FAD dependent oxidoreductase NJ56_16610 PF00072 Response regulator receiver domain NJ56_16610 PF00196 Bacterial regulatory proteins, luxR family NJ56_16615 PF01594 AI-2E family transporter NJ56_16625 PF03279 Bacterial lipid A biosynthesis acyltransferase NJ56_16635 PF00854 POT family NJ56_16645 PF00535 Glycosyl transferase family 2 NJ56_16650 PF04349 Periplasmic glucan biosynthesis protein, MdoG NJ56_16655 PF01757 Acyltransferase family NJ56_16665 PF03471 Transporter associated domain NJ56_16665 PF00999 Sodium/hydrogen exchanger family NJ56_16665 PF02080 TrkA-C domain NJ56_16670 PF00484 Carbonic anhydrase NJ56_16680 PF04358 DsrC like protein NJ56_16685 PF00708 Acylphosphatase NJ56_16690 PF17785 PUA-like domain NJ56_16690 PF10672 S-adenosylmethionine-dependent methyltransferase NJ56_16695 PF08755 Hemimethylated DNA-binding protein YccV like NJ56_16700 PF13380 CoA binding domain NJ56_16705 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NJ56_16710 PF02142 MGS-like domain NJ56_16715 PF12462 DNA helicase IV / RNA helicase N terminal NJ56_16715 PF13361 UvrD-like helicase C-terminal domain NJ56_16715 PF00580 UvrD/REP helicase N-terminal domain NJ56_16720 PF03733 Inner membrane component domain NJ56_16725 PF12805 FUSC-like inner membrane protein yccS NJ56_16730 PF04994 TfoX C-terminal domain NJ56_16730 PF04993 TfoX N-terminal domain NJ56_16735 PF03846 Cell division inhibitor SulA NJ56_16740 PF01389 OmpA-like transmembrane domain NJ56_16740 PF00691 OmpA family NJ56_16745 PF17414 MatP C-terminal ribbon-helix-helix domain NJ56_16745 PF06303 MatP N-terminal domain NJ56_16750 PF13654 AAA domain NJ56_16750 PF05362 Lon protease (S16) C-terminal proteolytic domain NJ56_16755 PF07977 FabA-like domain NJ56_16760 PF04957 Ribosome modulation factor NJ56_16765 PF03886 ABC-type transport auxiliary lipoprotein component NJ56_16770 PF02470 MlaD protein NJ56_16775 PF04403 Paraquat-inducible protein A NJ56_16780 PF16326 ABC transporter C-terminal domain NJ56_16780 PF12848 ABC transporter NJ56_16780 PF00005 ABC transporter NJ56_16785 PF10672 S-adenosylmethionine-dependent methyltransferase NJ56_16785 PF02926 THUMP domain NJ56_16785 PF01170 Putative RNA methylase family UPF0020 NJ56_16790 PF00111 2Fe-2S iron-sulfur cluster binding domain NJ56_16790 PF03476 MOSC N-terminal beta barrel domain NJ56_16790 PF03473 MOSC domain NJ56_16795 PF07126 Cell-division protein ZapC NJ56_16800 PF01180 Dihydroorotate dehydrogenase NJ56_16805 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NJ56_16805 PF11940 Domain of unknown function (DUF3458) Ig-like fold NJ56_16805 PF01433 Peptidase family M1 domain NJ56_16810 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NJ56_16810 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NJ56_16815 PF01336 OB-fold nucleic acid binding domain NJ56_16815 PF00152 tRNA synthetases class II (D, K and N) NJ56_16820 PF00267 Gram-negative porin NJ56_16825 PF00155 Aminotransferase class I and II NJ56_16830 PF00753 Metallo-beta-lactamase superfamily NJ56_16835 PF05951 Bacterial protein of unknown function (DUF882) NJ56_16840 PF01471 Putative peptidoglycan binding domain NJ56_16840 PF03734 L,D-transpeptidase catalytic domain NJ56_16845 PF16330 MukB hinge domain NJ56_16845 PF04310 MukB N-terminal NJ56_16850 PF04288 MukE-like family NJ56_16855 PF03882 MukF winged-helix domain NJ56_16855 PF17192 MukF middle domain NJ56_16855 PF17193 MukF C-terminal domain NJ56_16865 PF02698 DUF218 domain NJ56_16870 PF01636 Phosphotransferase enzyme family NJ56_16875 PF02348 Cytidylyltransferase NJ56_16880 PF03966 Trm112p-like protein NJ56_16885 PF00313 'Cold-shock' DNA-binding domain NJ56_16890 PF00313 'Cold-shock' DNA-binding domain NJ56_16895 PF07063 Domain of unknown function (DUF1338) NJ56_16900 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NJ56_16905 PF00005 ABC transporter NJ56_16905 PF00664 ABC transporter transmembrane region NJ56_16910 PF03772 Competence protein NJ56_16910 PF00753 Metallo-beta-lactamase superfamily NJ56_16915 PF00216 Bacterial DNA-binding protein NJ56_16920 PF00575 S1 RNA binding domain NJ56_16925 PF02224 Cytidylate kinase NJ56_16930 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NJ56_16935 PF00266 Aminotransferase class-V NJ56_16940 PF00710 Asparaginase, N-terminal NJ56_16940 PF17763 Glutaminase/Asparaginase C-terminal domain NJ56_16945 PF18381 YcaO cyclodehydratase C-terminal domain NJ56_16945 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NJ56_16950 PF01226 Formate/nitrite transporter NJ56_16955 PF01228 Glycine radical NJ56_16955 PF02901 Pyruvate formate lyase-like NJ56_16960 PF04055 Radical SAM superfamily NJ56_16965 PF07690 Major Facilitator Superfamily NJ56_16970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NJ56_16970 PF02403 Seryl-tRNA synthetase N-terminal domain NJ56_16975 PF00004 ATPase family associated with various cellular activities (AAA) NJ56_16975 PF12002 MgsA AAA+ ATPase C terminal NJ56_16975 PF16193 AAA C-terminal domain NJ56_16980 PF03548 Outer membrane lipoprotein carrier protein LolA NJ56_16985 PF01580 FtsK/SpoIIIE family NJ56_16985 PF17854 FtsK alpha domain NJ56_16985 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NJ56_16985 PF09397 Ftsk gamma domain NJ56_16990 PF01037 Lrp/AsnC ligand binding domain NJ56_16995 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJ56_17000 PF00005 ABC transporter NJ56_17000 PF00664 ABC transporter transmembrane region NJ56_17005 PF00664 ABC transporter transmembrane region NJ56_17005 PF00005 ABC transporter NJ56_17010 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NJ56_17015 PF01176 Translation initiation factor 1A / IF-1 NJ56_17020 PF17871 AAA lid domain NJ56_17020 PF07724 AAA domain (Cdc48 subfamily) NJ56_17020 PF02861 Clp amino terminal domain, pathogenicity island component NJ56_17020 PF00004 ATPase family associated with various cellular activities (AAA) NJ56_17020 PF10431 C-terminal, D2-small domain, of ClpB protein NJ56_17025 PF02617 ATP-dependent Clp protease adaptor protein ClpS NJ56_17030 PF00313 'Cold-shock' DNA-binding domain NJ56_17035 PF12704 MacB-like periplasmic core domain NJ56_17035 PF00005 ABC transporter NJ56_17035 PF02687 FtsX-like permease family NJ56_17040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJ56_17045 PF04393 Protein of unknown function (DUF535) NJ56_17050 PF11398 Protein of unknown function (DUF2813) NJ56_17055 PF03956 Lysine exporter LysO NJ56_17060 PF03063 Prismane/CO dehydrogenase family NJ56_17065 PF00970 Oxidoreductase FAD-binding domain NJ56_17065 PF00111 2Fe-2S iron-sulfur cluster binding domain NJ56_17065 PF00175 Oxidoreductase NAD-binding domain NJ56_17070 PF01212 Beta-eliminating lyase NJ56_17075 PF13460 NAD(P)H-binding NJ56_17075 PF11066 Protein of unknown function (DUF2867) NJ56_17080 PF01370 NAD dependent epimerase/dehydratase family NJ56_17085 PF01906 Putative heavy-metal-binding NJ56_17090 PF12883 Protein of unknown function (DUF3828) NJ56_17095 PF00005 ABC transporter NJ56_17100 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJ56_17105 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_17110 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_17115 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJ56_17120 PF05958 tRNA (Uracil-5-)-methyltransferase NJ56_17125 PF10767 Protein of unknown function (DUF2593) NJ56_17130 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_17135 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_17140 PF08402 TOBE domain NJ56_17140 PF00005 ABC transporter NJ56_17145 PF13416 Bacterial extracellular solute-binding protein NJ56_17150 PF10722 Putative bacterial sensory transduction regulator NJ56_17155 PF07214 Protein of unknown function (DUF1418) NJ56_17160 PF00462 Glutaredoxin NJ56_17165 PF06826 Predicted Permease Membrane Region NJ56_17165 PF02080 TrkA-C domain NJ56_17175 PF01569 PAP2 superfamily NJ56_17180 PF01791 DeoC/LacD family aldolase NJ56_17185 PF08220 DeoR-like helix-turn-helix domain NJ56_17185 PF00455 DeoR C terminal sensor domain NJ56_17195 PF03313 Serine dehydratase alpha chain NJ56_17195 PF03315 Serine dehydratase beta chain NJ56_17200 PF00768 D-alanyl-D-alanine carboxypeptidase NJ56_17200 PF07943 Penicillin-binding protein 5, C-terminal domain NJ56_17205 PF00291 Pyridoxal-phosphate dependent enzyme NJ56_17205 PF00571 CBS domain NJ56_17210 PF01053 Cys/Met metabolism PLP-dependent enzyme NJ56_17225 PF00043 Glutathione S-transferase, C-terminal domain NJ56_17225 PF13417 Glutathione S-transferase, N-terminal domain NJ56_17230 PF01370 NAD dependent epimerase/dehydratase family NJ56_17235 PF01634 ATP phosphoribosyltransferase NJ56_17235 PF08029 HisG, C-terminal domain NJ56_17240 PF00815 Histidinol dehydrogenase NJ56_17245 PF00155 Aminotransferase class I and II NJ56_17250 PF00475 Imidazoleglycerol-phosphate dehydratase NJ56_17255 PF00117 Glutamine amidotransferase class-I NJ56_17260 PF00977 Histidine biosynthesis protein NJ56_17265 PF00977 Histidine biosynthesis protein NJ56_17270 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NJ56_17270 PF01502 Phosphoribosyl-AMP cyclohydrolase NJ56_17275 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NJ56_17275 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NJ56_17280 PF00483 Nucleotidyl transferase NJ56_17285 PF00483 Nucleotidyl transferase NJ56_17290 PF03471 Transporter associated domain NJ56_17290 PF03741 Integral membrane protein TerC family NJ56_17290 PF00571 CBS domain NJ56_17295 PF03606 C4-dicarboxylate anaerobic carrier NJ56_17300 PF05170 AsmA family NJ56_17305 PF00692 dUTPase NJ56_17310 PF00485 Phosphoribulokinase / Uridine kinase family NJ56_17315 PF10609 NUBPL iron-transfer P-loop NTPase NJ56_17320 PF09334 tRNA synthetases class I (M) NJ56_17320 PF01588 Putative tRNA binding domain NJ56_17330 PF03788 LrgA family NJ56_17335 PF04172 LrgB-like family NJ56_17340 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region NJ56_17340 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NJ56_17345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_17345 PF03466 LysR substrate binding domain NJ56_17355 PF03949 Malic enzyme, NAD binding domain NJ56_17355 PF00390 Malic enzyme, N-terminal domain NJ56_17360 PF02698 DUF218 domain NJ56_17365 PF02653 Branched-chain amino acid transport system / permease component NJ56_17370 PF00005 ABC transporter NJ56_17375 PF13407 Periplasmic binding protein domain NJ56_17380 PF00356 Bacterial regulatory proteins, lacI family NJ56_17385 PF04235 Protein of unknown function (DUF418) NJ56_17390 PF01227 GTP cyclohydrolase I NJ56_17395 PF06779 Uncharacterised MFS-type transporter YbfB NJ56_17400 PF03466 LysR substrate binding domain NJ56_17400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJ56_17405 PF08240 Alcohol dehydrogenase GroES-like domain NJ56_17405 PF00107 Zinc-binding dehydrogenase NJ56_17410 PF00756 Putative esterase NJ56_17420 PF03453 MoeA N-terminal region (domain I and II) NJ56_17420 PF03454 MoeA C-terminal region (domain IV) NJ56_17420 PF00994 Probable molybdopterin binding domain NJ56_17425 PF00899 ThiF family NJ56_17430 PF12848 ABC transporter NJ56_17430 PF00005 ABC transporter NJ56_17435 PF16916 Dimerisation domain of Zinc Transporter NJ56_17435 PF01545 Cation efflux family NJ56_17445 PF01769 Divalent cation transporter NJ56_17445 PF00571 CBS domain NJ56_17445 PF03448 MgtE intracellular N domain NJ56_17450 PF13505 Outer membrane protein beta-barrel domain NJ56_17455 PF00892 EamA-like transporter family NJ56_17460 PF13649 Methyltransferase domain NJ56_17465 PF00210 Ferritin-like domain NJ56_17470 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJ56_17475 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_17480 PF00005 ABC transporter NJ56_17485 PF05971 RNA methyltransferase NJ56_17490 PF02885 Glycosyl transferase family, helical bundle domain NJ56_17495 PF13307 Helicase C-terminal domain NJ56_17495 PF06733 DEAD_2 NJ56_17500 PF00267 Gram-negative porin NJ56_17505 PF00892 EamA-like transporter family NJ56_17515 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain NJ56_17515 PF01276 Orn/Lys/Arg decarboxylase, major domain NJ56_17515 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NJ56_17520 PF13520 Amino acid permease NJ56_17525 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_17530 PF00005 ABC transporter NJ56_17535 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_17540 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NJ56_17545 PF00581 Rhodanese-like domain NJ56_17550 PF07308 Protein of unknown function (DUF1456) NJ56_17555 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_17560 PF00528 Binding-protein-dependent transport system inner membrane component NJ56_17570 PF00005 ABC transporter NJ56_17575 PF04226 Transglycosylase associated protein NJ56_17585 PF01844 HNH endonuclease NJ56_17590 PF01928 CYTH domain NJ56_17605 PF13166 AAA domain NJ56_17620 PF00872 Transposase, Mutator family NJ56_17640 PF13091 PLD-like domain NJ56_17680 PF06122 Conjugative relaxosome accessory transposon protein NJ56_17705 PF06834 TraU protein NJ56_17930 PF07057 DNA helicase TraI NJ56_17930 PF18272 single-stranded DNA binding TraI N-terminal subdomain NJ56_17930 PF08751 TrwC relaxase NJ56_17930 PF18340 DNA relaxase TraI 2B/2B-like domain NJ56_17970 PF00589 Phage integrase family NJ56_18020 PF00239 Resolvase, N terminal domain NJ56_18020 PF02796 Helix-turn-helix domain of resolvase NJ56_18060 PF13438 Domain of unknown function (DUF4113) NJ56_18060 PF00817 impB/mucB/samB family NJ56_18060 PF11798 IMS family HHH motif NJ56_18060 PF11799 impB/mucB/samB family C-terminal domain NJ56_18065 PF00717 Peptidase S24-like NJ56_18070 PF02195 ParB-like nuclease domain NJ56_18125 PF01464 Transglycosylase SLT domain NJ56_18130 PF05261 TraM protein, DNA-binding NJ56_18145 PF05513 TraA NJ56_18150 PF07178 TraL protein NJ56_18155 PF05309 TraE protein NJ56_18160 PF06586 TraK protein NJ56_18165 PF03743 Bacterial conjugation TrbI-like protein NJ56_18170 PF09676 Type IV conjugative transfer system lipoprotein (TraV) NJ56_18175 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer NJ56_18185 PF12477 Sex factor F TraW protein N terminal NJ56_18190 PF06834 TraU protein NJ56_18195 PF09673 Type-F conjugative transfer system pilin assembly protein NJ56_18200 PF06986 Type-1V conjugative transfer system mating pair stabilisation NJ56_18205 PF13728 F plasmid transfer operon protein NJ56_18210 PF13728 F plasmid transfer operon protein NJ56_18215 PF06122 Conjugative relaxosome accessory transposon protein NJ56_18220 PF07916 TraG-like protein, N-terminal region NJ56_18230 PF10412 Type IV secretion-system coupling protein DNA-binding domain NJ56_18230 PF12615 F sex factor protein N terminal NJ56_18235 PF08751 TrwC relaxase NJ56_18235 PF18340 DNA relaxase TraI 2B/2B-like domain NJ56_18235 PF07057 DNA helicase TraI NJ56_18235 PF18272 single-stranded DNA binding TraI N-terminal subdomain NJ56_18260 PF13091 PLD-like domain NJ56_18275 PF01051 Initiator Replication protein