locus-tag	class	description
NJ56_00005	COG0277	FAD linked oxidase domain protein
NJ56_00010	COG1686	Belongs to the peptidase S11 family
NJ56_00020	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NJ56_00025	COG0513	Belongs to the DEAD box helicase family
NJ56_00030	COG1309	transcriptional regulator
NJ56_00035	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJ56_00040	COG1131	(ABC) transporter
NJ56_00045	COG0842	Transport permease protein
NJ56_00050	COG0842	Transport permease protein
NJ56_00055	COG0670	Belongs to the BI1 family
NJ56_00060	COG0314	molybdopterin synthase activity
NJ56_00065	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
NJ56_00075	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
NJ56_00080	COG0391	Required for morphogenesis under gluconeogenic growth conditions
NJ56_00105	COG4628	conserved protein (DUF2132)
NJ56_00110	COG0556	nucleotide-excision repair
NJ56_00120	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
NJ56_00125	COG2226	methyltransferase
NJ56_00130	COG0156	8-amino-7-oxononanoate synthase activity
NJ56_00145	COG2706	6-phosphogluconolactonase activity
NJ56_00150	COG0561	phosphatase activity
NJ56_00160	COG4149	molybdate abc transporter
NJ56_00165	COG0725	ABC transporter, periplasmic molybdate-binding protein
NJ56_00175	COG3585	molybdate ion transport
NJ56_00175	COG2005	Transcriptional regulator
NJ56_00185	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
NJ56_00190	COG1085	galactose-1-phosphate uridylyltransferase
NJ56_00200	COG2017	converts alpha-aldose to the beta-anomer
NJ56_00210	COG0588	phosphoglycerate mutase activity
NJ56_00215	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NJ56_00225	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_00225	COG2205	protein histidine kinase activity
NJ56_00235	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
NJ56_00270	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
NJ56_00275	COG2885	chlorophyll binding
NJ56_00280	COG0823	Involved in the tonB-independent uptake of proteins
NJ56_00285	COG3064	Membrane
NJ56_00285	COG3064	Membrane
NJ56_00290	COG0848	biopolymer transport protein
NJ56_00295	COG0811	peptide transport
NJ56_00300	COG0824	Thioesterase
NJ56_00305	COG3790	cyd operon protein YbgE
NJ56_00310	COG4890	Cyd operon protein YbgT
NJ56_00315	COG1294	oxidase, subunit
NJ56_00320	COG1271	oxidase subunit
NJ56_00325	COG0737	Belongs to the 5'-nucleotidase family
NJ56_00330	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
NJ56_00335	COG0045	succinate-CoA ligase (ADP-forming) activity
NJ56_00340	COG0508	dehydrogenase complex catalyzes the overall conversion of
NJ56_00345	COG0567	Dehydrogenase, E1 component
NJ56_00350	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
NJ56_00355	COG1053	succinate dehydrogenase
NJ56_00360	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
NJ56_00365	COG2009	succinate dehydrogenase
NJ56_00395	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
NJ56_00400	COG1984	allophanate hydrolase subunit 2
NJ56_00405	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
NJ56_00410	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
NJ56_00415	COG5212	phosphodiesterase
NJ56_00420	COG0415	Belongs to the DNA photolyase family
NJ56_00425	COG3272	Protein of unknown function (DUF1722)
NJ56_00445	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
NJ56_00450	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
NJ56_00455	COG2205	protein histidine kinase activity
NJ56_00460	COG0745	RESPONSE REGULATOR receiver
NJ56_00470	COG0033	Phosphoglucomutase
NJ56_00475	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
NJ56_00480	COG0596	Alpha beta hydrolase
NJ56_00490	COG0840	transmembrane signaling receptor activity
NJ56_00500	COG0735	belongs to the Fur family
NJ56_00525	COG1263	PTS System
NJ56_00525	COG2190	(PTS) system
NJ56_00525	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_00530	COG0363	glucosamine-6-phosphate deaminase activity
NJ56_00535	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
NJ56_00540	COG1940	carbohydrate kinase activity
NJ56_00540	COG1846	Transcriptional regulator
NJ56_00545	COG0647	UMP catabolic process
NJ56_00550	COG0367	asparagine synthase
NJ56_00585	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NJ56_00590	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
NJ56_00595	COG1702	phosphate starvation-inducible protein PhoH
NJ56_00600	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
NJ56_00605	COG4535	Mg2 and Co2 transporter CorC
NJ56_00610	COG0815	Transfers the fatty acyl group on membrane lipoproteins
NJ56_00625	COG0765	amino acid transport
NJ56_00630	COG0765	amino acid transport
NJ56_00635	COG1126	abc transporter atp-binding protein
NJ56_00640	COG2888	peptidyl-tyrosine sulfation
NJ56_00650	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
NJ56_00655	COG1466	dna polymerase III delta subunit
NJ56_00660	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
NJ56_00665	COG0799	negative regulation of ribosome biogenesis
NJ56_00670	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
NJ56_00675	COG0768	penicillin binding
NJ56_00680	COG0772	Belongs to the SEDS family
NJ56_00685	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
NJ56_00690	COG1686	Belongs to the peptidase S11 family
NJ56_00705	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
NJ56_00715	COG3706	GGDEF domain
NJ56_00730	COG1278	Cold shock
NJ56_00735	COG1278	Cold shock
NJ56_00740	COG2197	response regulator
NJ56_00765	COG1309	transcriptional regulator
NJ56_00770	COG0745	RESPONSE REGULATOR receiver
NJ56_00770	COG3706	GGDEF domain
NJ56_00800	COG1215	transferase activity, transferring glycosyl groups
NJ56_00810	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
NJ56_00820	COG0745	RESPONSE REGULATOR receiver
NJ56_00840	COG3038	cytochrome b561
NJ56_00865	COG1022	Amp-dependent synthetase and ligase
NJ56_00875	COG1393	Belongs to the ArsC family
NJ56_00880	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
NJ56_00910	COG2801	Transposase and inactivated derivatives
NJ56_00920	COG2801	Transposase and inactivated derivatives
NJ56_00925	COG0582	viral genome integration into host DNA
NJ56_00935	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
NJ56_00940	COG2501	S4 domain
NJ56_00970	COG3121	Chaperone
NJ56_00975	COG3188	usher protein
NJ56_01000	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NJ56_01005	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NJ56_01010	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
NJ56_01015	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
NJ56_01020	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
NJ56_01025	COG4181	ATPase activity
NJ56_01030	COG2755	lipolytic protein G-D-S-L family
NJ56_01035	COG0300	oxidoreductase activity
NJ56_01040	COG3118	belongs to the thioredoxin family
NJ56_01045	COG0330	HflC and HflK could
NJ56_01050	COG1585	Membrane protein implicated in regulation of membrane protease activity
NJ56_01055	COG0789	Transcriptional regulator
NJ56_01060	COG2217	Heavy metal translocating P-type atpase
NJ56_01065	COG3735	TraB family
NJ56_01070	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
NJ56_01075	COG0737	Belongs to the 5'-nucleotidase family
NJ56_01080	COG4651	solute:proton antiporter activity
NJ56_01080	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NJ56_01085	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NJ56_01090	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
NJ56_01120	COG0438	transferase activity, transferring glycosyl groups
NJ56_01165	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
NJ56_01175	COG0326	Molecular chaperone. Has ATPase activity
NJ56_01180	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
NJ56_01195	COG0642	Histidine kinase
NJ56_01220	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
NJ56_01225	COG2832	Protein of unknown function (DUF454)
NJ56_01240	COG1196	nuclear chromosome segregation
NJ56_01240	COG3264	Mechanosensitive ion channel
NJ56_01245	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
NJ56_01250	COG1309	transcriptional regulator
NJ56_01255	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJ56_01260	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJ56_01265	COG0254	rRNA binding
NJ56_01270	COG0257	Belongs to the bacterial ribosomal protein bL36 family
NJ56_01295	COG3695	enzyme binding
NJ56_01300	COG1946	Acyl-CoA thioesterase
NJ56_01305	COG0004	ammonium transporteR
NJ56_01310	COG0347	Belongs to the P(II) protein family
NJ56_01315	COG1132	(ABC) transporter
NJ56_01320	COG1132	(ABC) transporter
NJ56_01325	COG1522	sequence-specific DNA binding
NJ56_01340	COG4533	DNA binding
NJ56_01345	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
NJ56_01350	COG0824	Thioesterase
NJ56_01355	COG1555	photosystem II stabilization
NJ56_01360	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NJ56_01365	COG0776	regulation of translation
NJ56_01370	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
NJ56_01375	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
NJ56_01380	COG0740	serine-type endopeptidase activity
NJ56_01395	COG0271	Belongs to the BolA IbaG family
NJ56_01400	COG3056	Lipoprotein
NJ56_01405	COG2223	nitrite transmembrane transporter activity
NJ56_01415	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NJ56_01420	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
NJ56_01425	COG1845	cytochrome c oxidase, subunit III
NJ56_01430	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
NJ56_01440	COG2814	Major facilitator Superfamily
NJ56_01445	COG1666	GTP binding
NJ56_01450	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
NJ56_01455	COG0693	protein deglycase activity
NJ56_01465	COG1840	ABC-type Fe3 transport system, periplasmic component
NJ56_01490	COG0142	geranyltranstransferase activity
NJ56_01495	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
NJ56_01500	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
NJ56_01505	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
NJ56_01515	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
NJ56_01520	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NJ56_01520	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NJ56_01525	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
NJ56_01530	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NJ56_01535	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NJ56_01540	COG1862	Preprotein translocase
NJ56_01550	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
NJ56_01555	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
NJ56_01560	COG0450	alkyl hydroperoxide reductase
NJ56_01565	COG0300	oxidoreductase activity
NJ56_01570	COG0366	Alpha amylase catalytic
NJ56_01575	COG1113	amino acid transport
NJ56_01580	COG1114	Component of the transport system for branched-chain amino acids
NJ56_01590	COG5002	protein histidine kinase activity
NJ56_01595	COG0745	RESPONSE REGULATOR receiver
NJ56_01600	COG0420	3'-5' exonuclease activity
NJ56_01605	COG0419	ATPase involved in DNA repair
NJ56_01610	COG1940	carbohydrate kinase activity
NJ56_01615	COG2974	May be involved in recombination
NJ56_01625	COG4126	flavin adenine dinucleotide binding
NJ56_01645	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
NJ56_01700	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
NJ56_01705	COG2195	Cleaves the N-terminal amino acid of tripeptides
NJ56_01710	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NJ56_01720	COG2991	Protein conserved in bacteria
NJ56_01725	COG1477	protein flavinylation
NJ56_01735	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJ56_01740	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJ56_01745	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJ56_01750	COG1805	sodium ion transport
NJ56_01755	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJ56_01760	COG3034	peptidoglycan biosynthetic process
NJ56_01765	COG0121	glutamine amidotransferase
NJ56_01770	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
NJ56_01775	COG1960	acyl-CoA dehydrogenase activity
NJ56_01785	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NJ56_01795	COG2226	methyltransferase
NJ56_01805	COG0741	lytic transglycosylase activity
NJ56_01805	COG1388	LysM domain
NJ56_01810	COG3021	interspecies interaction between organisms
NJ56_01845	COG0542	response to heat
NJ56_01855	COG0564	pseudouridine synthase activity
NJ56_01865	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NJ56_01870	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
NJ56_01875	COG1605	Chorismate mutase
NJ56_01875	COG0077	Prephenate dehydratase
NJ56_01880	COG0287	Prephenate dehydrogenase
NJ56_01880	COG1605	Chorismate mutase
NJ56_01885	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NJ56_01890	COG3279	Response regulator of the LytR AlgR family
NJ56_01895	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
NJ56_01900	COG3137	Salt-induced outer membrane protein
NJ56_01905	COG0335	large ribosomal subunit rRNA binding
NJ56_01910	COG0336	Belongs to the RNA methyltransferase TrmD family
NJ56_01915	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
NJ56_01920	COG0228	four-way junction DNA binding
NJ56_01925	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
NJ56_01930	COG4137	Cytochrome C assembly protein
NJ56_01935	COG4536	flavin adenine dinucleotide binding
NJ56_01940	COG1854	S-ribosylhomocysteine lyase activity
NJ56_01945	COG2918	glutathione biosynthetic process
NJ56_01950	COG1238	metal cluster binding
NJ56_01955	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NJ56_01980	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
NJ56_01985	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
NJ56_01990	COG2137	regulation of response to DNA damage stimulus
NJ56_01995	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
NJ56_02010	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
NJ56_02010	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
NJ56_02035	COG3031	protein transport across the cell outer membrane
NJ56_02090	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
NJ56_02100	COG3397	chitin binding
NJ56_02120	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NJ56_02185	COG1157	protein secretion by the type III secretion system
NJ56_02195	COG4789	Type iii secretion
NJ56_02250	COG0741	lytic transglycosylase activity
NJ56_02270	COG0784	Response regulator, receiver
NJ56_02270	COG2205	protein histidine kinase activity
NJ56_02280	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
NJ56_02285	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NJ56_02290	COG1388	LysM domain
NJ56_02290	COG4942	peptidase
NJ56_02300	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
NJ56_02305	COG0585	pseudouridine synthase activity
NJ56_02310	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
NJ56_02320	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
NJ56_02330	COG0529	Catalyzes the synthesis of activated sulfate
NJ56_02335	COG2895	sulfate adenylyltransferase (ATP) activity
NJ56_02340	COG0175	sulfate reduction
NJ56_02345	COG1648	precorrin-2 dehydrogenase activity
NJ56_02345	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NJ56_02350	COG2234	aminopeptidase activity
NJ56_02365	COG0175	sulfate reduction
NJ56_02375	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NJ56_02380	COG0720	synthase
NJ56_02385	COG0602	queuosine metabolic process
NJ56_02395	COG0504	CTP synthase activity
NJ56_02400	COG3956	TIGRFAM MazG family protein
NJ56_02405	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NJ56_02410	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NJ56_02420	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NJ56_02425	COG0232	Belongs to the dGTPase family. Type 2 subfamily
NJ56_02430	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NJ56_02440	COG2860	membrane
NJ56_02445	COG0316	Belongs to the HesB IscA family
NJ56_02455	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
NJ56_02460	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NJ56_02465	COG1643	Atp-dependent helicase
NJ56_02470	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
NJ56_02475	COG1489	DNA binding
NJ56_02485	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
NJ56_02495	COG0617	tRNA 3'-terminal CCA addition
NJ56_02500	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
NJ56_02505	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
NJ56_02510	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
NJ56_02515	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
NJ56_02520	COG0726	polysaccharide deacetylase
NJ56_02525	COG0842	Transport permease protein
NJ56_02530	COG1131	(ABC) transporter
NJ56_02535	COG0288	reversible hydration of carbon dioxide
NJ56_02545	COG2132	Multicopper oxidase
NJ56_02555	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
NJ56_02570	COG3112	Uncharacterised protein family (UPF0231)
NJ56_02575	COG1049	propionate catabolic process, 2-methylcitrate cycle
NJ56_02585	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NJ56_02590	COG0508	dehydrogenase complex catalyzes the overall conversion of
NJ56_02595	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
NJ56_02600	COG2186	Transcriptional regulator
NJ56_02610	COG1113	amino acid transport
NJ56_02615	COG3725	Membrane protein required for beta-lactamase induction
NJ56_02630	COG4969	Belongs to the N-Me-Phe pilin family
NJ56_02635	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NJ56_02640	COG1459	type II secretion system
NJ56_02645	COG0516	GMP reductase activity
NJ56_02650	COG0237	dephospho-CoA kinase activity
NJ56_02665	COG0494	nUDIX hydrolase
NJ56_02690	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
NJ56_02695	COG0849	cell division
NJ56_02700	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
NJ56_02710	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NJ56_02715	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
NJ56_02720	COG0772	Belongs to the SEDS family
NJ56_02735	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
NJ56_02740	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
NJ56_02745	COG0768	penicillin binding
NJ56_02750	COG3116	cell division
NJ56_02755	COG0275	rRNA processing
NJ56_02770	COG0675	Transposase, IS605 OrfB family
NJ56_02775	COG1943	Transposase
NJ56_02780	COG1609	Transcriptional regulator
NJ56_02790	COG0028	Belongs to the TPP enzyme family
NJ56_02795	COG1022	Amp-dependent synthetase and ligase
NJ56_02810	COG0473	3-isopropylmalate dehydrogenase activity
NJ56_02815	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
NJ56_02825	COG2814	Major facilitator Superfamily
NJ56_02840	COG4143	(ABC) transporter
NJ56_02845	COG1178	ABC-type Fe3 transport system permease component
NJ56_02855	COG0586	Pfam SNARE associated Golgi protein
NJ56_02860	COG0417	DNA replication proofreading
NJ56_02865	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
NJ56_02870	COG0564	pseudouridine synthase activity
NJ56_02880	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
NJ56_02885	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NJ56_02890	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
NJ56_02895	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
NJ56_02900	COG2967	ApaG domain
NJ56_02925	COG2966	Psort location CytoplasmicMembrane, score
NJ56_02935	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
NJ56_02940	COG0505	Belongs to the CarA family
NJ56_02950	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
NJ56_02955	COG1047	Peptidyl-prolyl cis-trans
NJ56_02960	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
NJ56_02970	COG0196	riboflavin kinase activity
NJ56_02985	COG0583	DNA-binding transcription factor activity
NJ56_02990	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NJ56_03000	COG0443	Heat shock 70 kDa protein
NJ56_03005	COG1584	GPR1 FUN34 yaaH family protein
NJ56_03015	COG0477	Major facilitator Superfamily
NJ56_03020	COG0521	Mo-molybdopterin cofactor biosynthetic process
NJ56_03025	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NJ56_03055	COG0745	RESPONSE REGULATOR receiver
NJ56_03060	COG3045	CreA protein
NJ56_03065	COG2207	Transcriptional regulator
NJ56_03065	COG3708	Transcriptional regulator
NJ56_03070	COG0406	alpha-ribazole phosphatase activity
NJ56_03075	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
NJ56_03080	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
NJ56_03085	COG0741	lytic transglycosylase activity
NJ56_03105	COG0488	(ABC) transporter
NJ56_03120	COG0560	Phosphoserine phosphatase
NJ56_03125	COG3726	membrane protein affecting hemolysin expression
NJ56_03135	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
NJ56_03145	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
NJ56_03150	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NJ56_03155	COG0084	hydrolase, TatD family'
NJ56_03160	COG4667	esterase of the alpha-beta hydrolase superfamily
NJ56_03170	COG2823	Periplasmic or secreted lipoprotein
NJ56_03185	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
NJ56_03215	COG3706	GGDEF domain
NJ56_03225	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
NJ56_03225	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NJ56_03225	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_03230	COG1461	Dihydroxyacetone kinase
NJ56_03235	COG2376	Dihydroxyacetone kinase
NJ56_03245	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJ56_03250	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJ56_03265	COG0859	PFAM glycosyl transferase family 9
NJ56_03280	COG0191	fructose-bisphosphate aldolase activity
NJ56_03290	COG3119	arylsulfatase activity
NJ56_03295	COG0641	radical SAM
NJ56_03305	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_03315	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
NJ56_03325	COG3716	PTS system mannose fructose sorbose family IID component
NJ56_03330	COG3715	PTS system
NJ56_03335	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_03340	COG2222	sugar isomerase
NJ56_03350	COG1349	DNA-binding transcription factor activity
NJ56_03355	COG3119	arylsulfatase activity
NJ56_03375	COG5492	domain, Protein
NJ56_03380	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
NJ56_03465	COG3077	Addiction module antitoxin, RelB DinJ family
NJ56_03495	COG0464	growth
NJ56_03585	COG0582	viral genome integration into host DNA
NJ56_03595	COG0795	lipopolysaccharide-transporting ATPase activity
NJ56_03600	COG0795	lipopolysaccharide-transporting ATPase activity
NJ56_03605	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
NJ56_03610	COG2927	DNA polymerase III (CHI subunit)
NJ56_03625	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
NJ56_03630	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
NJ56_03645	COG3624	Phosphonate C-P lyase system protein PhnG
NJ56_03650	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
NJ56_03655	COG3626	phosphonate metabolism
NJ56_03660	COG3627	carbon phosphorus lyase activity
NJ56_03665	COG4107	phosphonate C-P lyase system protein PhnK
NJ56_03670	COG4778	phosphonate C-P lyase system protein PhnL
NJ56_03675	COG3454	Phosphonate metabolism
NJ56_03680	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
NJ56_03685	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
NJ56_03690	COG0702	epimerase
NJ56_03695	COG3787	Belongs to the UPF0306 family
NJ56_03700	COG1982	Orn Lys Arg decarboxylase major
NJ56_03705	COG0531	amino acid
NJ56_03710	COG2827	Endonuclease containing a URI domain
NJ56_03715	COG3153	acetyltransferase
NJ56_03740	COG0814	amino acid
NJ56_03745	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NJ56_03750	COG0513	Belongs to the DEAD box helicase family
NJ56_03765	COG1185	polyribonucleotide nucleotidyltransferase activity
NJ56_03770	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
NJ56_03780	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
NJ56_03790	COG0195	Participates in both transcription termination and antitermination
NJ56_03810	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
NJ56_03815	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NJ56_03820	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
NJ56_03825	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NJ56_03830	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
NJ56_03835	COG1534	Rna-binding protein
NJ56_03840	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NJ56_03845	COG2027	D-alanyl-D-alanine carboxypeptidase
NJ56_03850	COG0745	RESPONSE REGULATOR receiver
NJ56_03855	COG0642	Histidine kinase
NJ56_03860	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
NJ56_03865	COG0697	spore germination
NJ56_03880	COG0142	geranyltranstransferase activity
NJ56_03895	COG3423	Transcriptional regulator
NJ56_03910	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NJ56_03920	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
NJ56_03925	COG2105	PFAM AIG2 family protein
NJ56_03930	COG2911	Protein conserved in bacteria
NJ56_03935	COG0729	surface antigen
NJ56_03940	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NJ56_03945	COG1253	flavin adenine dinucleotide binding
NJ56_03955	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
NJ56_03960	COG1218	3'(2'),5'-bisphosphate nucleotidase
NJ56_03965	COG0737	Belongs to the 5'-nucleotidase family
NJ56_03975	COG0545	Peptidyl-prolyl cis-trans isomerase
NJ56_03980	COG3061	Opacity-associated protein A
NJ56_03985	COG0359	binds to the 23S rRNA
NJ56_03995	COG2965	DNA replication, synthesis of RNA primer
NJ56_04000	COG0360	Binds together with S18 to 16S ribosomal RNA
NJ56_04015	COG1073	alpha beta
NJ56_04035	COG3188	usher protein
NJ56_04040	COG3121	Chaperone
NJ56_04060	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NJ56_04065	COG0557	exoribonuclease II activity
NJ56_04070	COG1959	2 iron, 2 sulfur cluster binding
NJ56_04075	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
NJ56_04080	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
NJ56_04085	COG0330	HflC and HflK could
NJ56_04090	COG0330	HflC and HflK could
NJ56_04095	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
NJ56_04105	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
NJ56_04115	COG0860	N-Acetylmuramoyl-L-alanine amidase
NJ56_04120	COG0802	atpase or kinase
NJ56_04125	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
NJ56_04125	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
NJ56_04130	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
NJ56_04150	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
NJ56_04155	COG1162	GTPase activity
NJ56_04160	COG0688	phosphatidylethanolamine metabolic process
NJ56_04165	COG1511	domain protein
NJ56_04165	COG3264	Mechanosensitive ion channel
NJ56_04170	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
NJ56_04175	COG1053	succinate dehydrogenase
NJ56_04180	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
NJ56_04185	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
NJ56_04190	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
NJ56_04200	COG2076	Multidrug Resistance protein
NJ56_04210	COG3188	usher protein
NJ56_04230	COG3397	chitin binding
NJ56_04240	COG1509	lysine 2,3-aminomutase activity
NJ56_04270	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
NJ56_04280	COG4232	protein-disulfide reductase activity
NJ56_04285	COG1309	transcriptional regulator
NJ56_04295	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
NJ56_04465	COG0464	growth
NJ56_04580	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NJ56_04615	COG0305	Participates in initiation and elongation during chromosome replication
NJ56_04630	COG1301	dicarboxylic acid transport
NJ56_04635	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NJ56_04640	COG3162	membrane
NJ56_04645	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NJ56_04675	COG0138	bifunctional purine biosynthesis protein purh
NJ56_04680	COG0151	Belongs to the GarS family
NJ56_04690	COG0776	regulation of translation
NJ56_04695	COG3068	Protein conserved in bacteria
NJ56_04700	COG1515	deoxyribonuclease V activity
NJ56_04705	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
NJ56_04710	COG2816	NAD+ diphosphatase activity
NJ56_04715	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
NJ56_04720	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
NJ56_04730	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NJ56_04735	COG2104	thiamine diphosphate biosynthetic process
NJ56_04740	COG2022	thiamine diphosphate biosynthetic process
NJ56_04750	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
NJ56_04755	COG0085	RNA polymerase activity
NJ56_04765	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
NJ56_04780	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
NJ56_04785	COG0250	Participates in transcription elongation, termination and antitermination
NJ56_04790	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
NJ56_04830	COG0812	UDP-N-acetylmuramate dehydrogenase activity
NJ56_04855	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
NJ56_04860	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NJ56_04865	COG1739	Uncharacterized protein family UPF0029
NJ56_04875	COG1250	3-hydroxyacyl-CoA dehydrogenase
NJ56_04875	COG1024	Enoyl-CoA hydratase
NJ56_04885	COG0543	2 iron, 2 sulfur cluster binding
NJ56_04900	COG0250	Participates in transcription elongation, termination and antitermination
NJ56_04915	COG0805	protein transport
NJ56_04925	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NJ56_04930	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
NJ56_04935	COG3165	ubiquinone biosynthetic process from chorismate
NJ56_04940	COG2226	methyltransferase
NJ56_04945	COG1322	Protein conserved in bacteria
NJ56_04950	COG0586	Pfam SNARE associated Golgi protein
NJ56_04955	COG1966	Carbon starvation protein
NJ56_04970	COG0412	Dienelactone hydrolase
NJ56_04975	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
NJ56_04980	COG0583	DNA-binding transcription factor activity
NJ56_04995	COG0584	glycerophosphoryl diester phosphodiesterase
NJ56_05005	COG0395	ABC-type sugar transport system, permease component
NJ56_05010	COG1175	transmembrane transport
NJ56_05015	COG1653	transport
NJ56_05050	COG0410	ABC transporter
NJ56_05055	COG0411	ABC transporter
NJ56_05060	COG4177	L-phenylalanine transmembrane transporter activity
NJ56_05065	COG0559	Belongs to the binding-protein-dependent transport system permease family
NJ56_05080	COG1929	Belongs to the glycerate kinase type-1 family
NJ56_05085	COG2610	gluconate transmembrane transporter activity
NJ56_05090	COG3835	regulator
NJ56_05100	COG2177	Part of the ABC transporter FtsEX involved in
NJ56_05105	COG2884	Cell division ATP-binding protein ftsE
NJ56_05110	COG0552	protein localization to endoplasmic reticulum
NJ56_05110	COG0552	protein localization to endoplasmic reticulum
NJ56_05115	COG0742	ribosomal rna small subunit methyltransferase
NJ56_05120	COG3776	membrane
NJ56_05135	COG3714	YhhN family
NJ56_05150	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
NJ56_05160	COG0247	lactate metabolic process
NJ56_05170	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
NJ56_05180	COG2271	Major facilitator Superfamily
NJ56_05185	COG0584	glycerophosphoryl diester phosphodiesterase
NJ56_05190	COG0561	phosphatase activity
NJ56_05195	COG2267	carboxylic ester hydrolase activity
NJ56_05200	COG1280	lysine exporter protein (LysE YggA)
NJ56_05205	COG0514	ATP-dependent DNA helicase (RecQ)
NJ56_05210	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
NJ56_05215	COG2050	protein possibly involved in aromatic compounds catabolism
NJ56_05225	COG0598	Magnesium transport protein CorA
NJ56_05235	COG5564	TIM-barrel signal transduction protein
NJ56_05240	COG5441	Belongs to the UPF0261 family
NJ56_05250	COG0210	DNA helicase
NJ56_05255	COG1011	Hydrolase
NJ56_05260	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
NJ56_05265	COG3159	Protein conserved in bacteria
NJ56_05270	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
NJ56_05275	COG5567	small periplasmic lipoprotein
NJ56_05285	COG3072	Adenylate cyclase
NJ56_05290	COG0181	hydroxymethylbilane synthase activity
NJ56_05295	COG1587	Uroporphyrinogen-III synthase
NJ56_05300	COG2959	enzyme of heme biosynthesis
NJ56_05305	COG3071	HemY protein
NJ56_05335	COG1113	amino acid transport
NJ56_05355	COG2244	polysaccharide biosynthetic process
NJ56_05360	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
NJ56_05365	COG0456	acetyltransferase
NJ56_05370	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
NJ56_05375	COG1088	dTDP-glucose 4,6-dehydratase activity
NJ56_05380	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
NJ56_05385	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
NJ56_05390	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
NJ56_05395	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
NJ56_05400	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
NJ56_05405	COG3118	belongs to the thioredoxin family
NJ56_05415	COG0248	Ppx GppA phosphatase
NJ56_05425	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NJ56_05435	COG0583	DNA-binding transcription factor activity
NJ56_05440	COG3397	chitin binding
NJ56_05450	COG0129	dihydroxy-acid dehydratase activity
NJ56_05460	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
NJ56_05465	COG3978	acetolactate synthase activity
NJ56_05485	COG3085	chromosome segregation
NJ56_05490	COG0583	DNA-binding transcription factor activity
NJ56_05560	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NJ56_05570	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NJ56_05570	COG0678	peroxiredoxin activity
NJ56_05575	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NJ56_05610	COG1629	transport
NJ56_05615	COG0165	Argininosuccinate lyase
NJ56_05620	COG0137	argininosuccinate synthase activity
NJ56_05625	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NJ56_05630	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
NJ56_05670	COG0527	aspartate kinase activity
NJ56_05670	COG0460	homoserine dehydrogenase
NJ56_05675	COG0626	cystathionine gamma-synthase activity
NJ56_05680	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
NJ56_05690	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
NJ56_05695	COG1609	Transcriptional regulator
NJ56_05700	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
NJ56_05705	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
NJ56_05710	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
NJ56_05715	COG1575	Belongs to the MenA family. Type 1 subfamily
NJ56_05720	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NJ56_05725	COG3074	FtsZ-dependent cytokinesis
NJ56_05735	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
NJ56_05740	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
NJ56_05745	COG1494	fructose-1,6-bisphosphatase
NJ56_05750	COG2814	Major facilitator Superfamily
NJ56_05760	COG3152	Membrane
NJ56_05775	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
NJ56_05785	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
NJ56_05790	COG3678	ATP-independent chaperone mediated protein folding
NJ56_05795	COG0745	RESPONSE REGULATOR receiver
NJ56_05800	COG2205	protein histidine kinase activity
NJ56_05805	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
NJ56_05810	COG1045	serine acetyltransferase
NJ56_05815	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
NJ56_05820	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
NJ56_05825	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NJ56_05830	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NJ56_05835	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
NJ56_05840	COG4942	peptidase
NJ56_05845	COG2861	carbohydrate metabolic process
NJ56_05860	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NJ56_05865	COG0859	PFAM glycosyl transferase family 9
NJ56_05870	COG0859	PFAM glycosyl transferase family 9
NJ56_05875	COG1519	Transferase
NJ56_05895	COG0267	Belongs to the bacterial ribosomal protein bL33 family
NJ56_05900	COG0227	Belongs to the bacterial ribosomal protein bL28 family
NJ56_05910	COG2003	Belongs to the UPF0758 family
NJ56_05915	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
NJ56_05920	COG0756	dUTP diphosphatase activity
NJ56_05925	COG1309	transcriptional regulator
NJ56_05930	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
NJ56_05935	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
NJ56_05940	COG1561	YicC-like family, N-terminal region
NJ56_05955	COG5001	Diguanylate cyclase
NJ56_05960	COG1024	Enoyl-CoA hydratase
NJ56_05965	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NJ56_05980	COG2860	membrane
NJ56_05985	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NJ56_05995	COG1758	RNA polymerase activity
NJ56_06000	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NJ56_06005	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NJ56_06010	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
NJ56_06015	COG0786	glutamate:sodium symporter activity
NJ56_06020	COG2233	PERMEase
NJ56_06025	COG2982	Protein involved in outer membrane biogenesis
NJ56_06030	COG0456	acetyltransferase
NJ56_06045	COG1011	Hydrolase
NJ56_06055	COG0174	glutamine synthetase
NJ56_06065	COG3852	Histidine kinase
NJ56_06075	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NJ56_06090	COG0218	Necessary for normal cell division and for the maintenance of normal septation
NJ56_06095	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NJ56_06095	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NJ56_06100	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NJ56_06105	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
NJ56_06110	COG3084	Protein conserved in bacteria
NJ56_06120	COG1763	Mo-molybdopterin cofactor biosynthetic process
NJ56_06145	COG2186	Transcriptional regulator
NJ56_06150	COG1609	Transcriptional regulator
NJ56_06155	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NJ56_06160	COG1879	ABC-type sugar transport system periplasmic component
NJ56_06165	COG1172	Belongs to the binding-protein-dependent transport system permease family
NJ56_06170	COG1129	ABC transporter
NJ56_06175	COG1869	D-ribose catabolic process
NJ56_06180	COG3158	transport of potassium into the cell
NJ56_06185	COG0714	Associated with various cellular activities
NJ56_06190	COG2425	protein containing a von Willebrand factor type A (vWA) domain
NJ56_06200	COG2502	aspartate--ammonia ligase
NJ56_06205	COG1522	sequence-specific DNA binding
NJ56_06210	COG0716	FMN binding
NJ56_06220	COG0445	tRNA wobble uridine modification
NJ56_06225	COG0357	Ribosomal RNA small subunit methyltransferase G
NJ56_06230	COG3312	ion transport
NJ56_06235	COG0356	it plays a direct role in the translocation of protons across the membrane
NJ56_06245	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
NJ56_06255	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
NJ56_06260	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
NJ56_06275	COG0355	proton-transporting ATP synthase activity, rotational mechanism
NJ56_06285	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
NJ56_06290	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NJ56_06295	COG0573	inorganic phosphate transmembrane transporter activity
NJ56_06300	COG0581	inorganic phosphate transmembrane transporter activity
NJ56_06310	COG0704	Plays a role in the regulation of phosphate uptake
NJ56_06315	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_06320	COG0765	amino acid transport
NJ56_06325	COG0765	amino acid transport
NJ56_06330	COG2252	PERMEase
NJ56_06335	COG0840	transmembrane signaling receptor activity
NJ56_06345	COG3121	Chaperone
NJ56_06360	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
NJ56_06365	COG0706	membrane insertase activity
NJ56_06375	COG0594	ribonuclease P activity
NJ56_06380	COG0230	Belongs to the bacterial ribosomal protein bL34 family
NJ56_06395	COG0592	DNA-directed DNA polymerase activity
NJ56_06405	COG0187	DNA topoisomerase II activity
NJ56_06410	COG0561	phosphatase activity
NJ56_06415	COG0823	Involved in the tonB-independent uptake of proteins
NJ56_06420	COG5645	(Lipo)protein
NJ56_06435	COG0569	domain protein
NJ56_06435	COG2985	domain, Protein
NJ56_06440	COG3977	Valine--pyruvate aminotransferase
NJ56_06445	COG2885	chlorophyll binding
NJ56_06465	COG2818	Glycosylase
NJ56_06515	COG2213	PTS system mannitol-specific
NJ56_06515	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_06525	COG3722	fumarate hydratase activity
NJ56_06535	COG2258	MOSC domain
NJ56_06540	COG0840	transmembrane signaling receptor activity
NJ56_06545	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
NJ56_06555	COG3383	formate dehydrogenase (NAD+) activity
NJ56_06555	COG0243	molybdopterin cofactor binding
NJ56_06560	COG3383	formate dehydrogenase (NAD+) activity
NJ56_06560	COG0243	molybdopterin cofactor binding
NJ56_06565	COG0437	4 iron, 4 sulfur cluster binding
NJ56_06570	COG2864	formate dehydrogenase
NJ56_06580	COG1921	L-seryl-tRNASec selenium transferase activity
NJ56_06585	COG3276	selenocysteine insertion sequence binding
NJ56_06590	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
NJ56_06600	COG3274	enterobacterial common antigen metabolic process
NJ56_06605	COG0582	viral genome integration into host DNA
NJ56_06625	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
NJ56_06630	COG2986	histidine ammonia-lyase
NJ56_06650	COG2194	sulfuric ester hydrolase activity
NJ56_06655	COG2197	response regulator
NJ56_06660	COG3851	Histidine kinase
NJ56_06665	COG2271	Major facilitator Superfamily
NJ56_06675	COG0747	negative chemotaxis
NJ56_06680	COG0601	transmembrane transport
NJ56_06685	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NJ56_06690	COG0444	Belongs to the ABC transporter superfamily
NJ56_06695	COG4608	Belongs to the ABC transporter superfamily
NJ56_06700	COG2194	sulfuric ester hydrolase activity
NJ56_06725	COG1215	transferase activity, transferring glycosyl groups
NJ56_06730	COG1215	transferase activity, transferring glycosyl groups
NJ56_06735	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
NJ56_06740	COG0457	Tetratricopeptide repeat
NJ56_06740	COG3118	belongs to the thioredoxin family
NJ56_06745	COG2200	EAL domain
NJ56_06745	COG2199	diguanylate cyclase activity
NJ56_06750	COG1301	dicarboxylic acid transport
NJ56_06755	COG0612	Peptidase, M16
NJ56_06760	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NJ56_06765	COG1942	4-Oxalocrotonate Tautomerase
NJ56_06770	COG2200	EAL domain
NJ56_06775	COG2134	cdp-diacylglycerol pyrophosphatase
NJ56_06780	COG1295	ribonuclease BN
NJ56_06790	COG1301	dicarboxylic acid transport
NJ56_06795	COG0626	cystathionine gamma-synthase activity
NJ56_06800	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NJ56_06805	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
NJ56_06810	COG0339	signal peptide processing
NJ56_06815	COG0742	ribosomal rna small subunit methyltransferase
NJ56_06825	COG0589	response to stress
NJ56_06835	COG0306	phosphate transporter
NJ56_06840	COG2081	HI0933 family
NJ56_06850	COG1247	-acetyltransferase
NJ56_06855	COG1741	Belongs to the pirin family
NJ56_06860	COG1609	Transcriptional regulator
NJ56_06865	COG2610	gluconate transmembrane transporter activity
NJ56_06885	COG3265	gluconokinase activity
NJ56_06890	COG2095	MarC family integral membrane protein
NJ56_06895	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
NJ56_06900	COG3275	phosphorelay sensor kinase activity
NJ56_06905	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
NJ56_06910	COG1523	belongs to the glycosyl hydrolase 13 family
NJ56_06915	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
NJ56_06920	COG0297	glycogen (starch) synthase activity
NJ56_06925	COG0058	SHG alpha-glucan phosphorylase activity
NJ56_06930	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
NJ56_06935	COG1349	DNA-binding transcription factor activity
NJ56_06940	COG0705	Rhomboid family
NJ56_06950	COG2909	trisaccharide binding
NJ56_06955	COG0058	SHG alpha-glucan phosphorylase activity
NJ56_06960	COG1640	4-alpha-glucanotransferase
NJ56_06970	COG1040	competence protein
NJ56_06975	COG0596	Alpha beta hydrolase
NJ56_06995	COG1918	ferrous iron import across plasma membrane
NJ56_07000	COG2183	response to ionizing radiation
NJ56_07025	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NJ56_07030	COG0745	RESPONSE REGULATOR receiver
NJ56_07040	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
NJ56_07050	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
NJ56_07055	COG1011	Hydrolase
NJ56_07065	COG0494	nUDIX hydrolase
NJ56_07070	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
NJ56_07095	COG4796	Type ii and iii secretion system protein
NJ56_07100	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
NJ56_07120	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
NJ56_07130	COG0180	Tryptophanyl-tRNA synthetase
NJ56_07145	COG2146	nitrite reductase [NAD(P)H] activity
NJ56_07150	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NJ56_07155	COG0402	S-adenosylhomocysteine deaminase activity
NJ56_07160	COG0738	Major facilitator superfamily
NJ56_07175	COG1609	Transcriptional regulator
NJ56_07180	COG1486	melibiose metabolic process
NJ56_07185	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NJ56_07200	COG1289	transmembrane transporter activity
NJ56_07205	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NJ56_07210	COG1765	OsmC-like protein
NJ56_07235	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NJ56_07240	COG3954	Phosphoribulokinase
NJ56_07250	COG0429	hydrolase of the alpha beta-hydrolase fold
NJ56_07260	COG0859	PFAM glycosyl transferase family 9
NJ56_07265	COG1216	Glycosyl transferase, family 2
NJ56_07270	COG0488	(ABC) transporter
NJ56_07275	COG2249	NAD(P)H dehydrogenase (quinone) activity
NJ56_07285	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
NJ56_07290	COG1047	Peptidyl-prolyl cis-trans
NJ56_07300	COG0545	Peptidyl-prolyl cis-trans isomerase
NJ56_07305	COG2964	Protein conserved in bacteria
NJ56_07315	COG2923	Belongs to the DsrF TusC family
NJ56_07320	COG2168	tRNA wobble position uridine thiolation
NJ56_07325	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
NJ56_07330	COG0049	tRNA binding
NJ56_07345	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
NJ56_07360	COG0051	transcription antitermination factor activity, RNA binding
NJ56_07365	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
NJ56_07375	COG0089	rRNA binding
NJ56_07380	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
NJ56_07385	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
NJ56_07390	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
NJ56_07395	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
NJ56_07400	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
NJ56_07405	COG0255	Belongs to the universal ribosomal protein uL29 family
NJ56_07410	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
NJ56_07415	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
NJ56_07425	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
NJ56_07450	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
NJ56_07455	COG1841	ribosomal large subunit assembly
NJ56_07460	COG0200	Binds to the 23S rRNA
NJ56_07465	COG0201	protein transport
NJ56_07470	COG0257	Belongs to the bacterial ribosomal protein bL36 family
NJ56_07475	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
NJ56_07485	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
NJ56_07495	COG0203	ribosomal protein L17
NJ56_07500	COG0789	Transcriptional regulator
NJ56_07505	COG3036	rescue of stalled ribosome
NJ56_07510	COG1970	mechanosensitive ion channel activity
NJ56_07515	COG0569	domain protein
NJ56_07520	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
NJ56_07520	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NJ56_07525	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
NJ56_07530	COG0242	peptide deformylase activity
NJ56_07535	COG0758	DNA mediated transformation
NJ56_07540	COG2922	Belongs to the Smg family
NJ56_07545	COG0551	DNA topoisomerase type I activity
NJ56_07550	COG0009	L-threonylcarbamoyladenylate synthase
NJ56_07560	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
NJ56_07605	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
NJ56_07640	COG0583	DNA-binding transcription factor activity
NJ56_07725	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NJ56_07755	COG3328	transposase activity
NJ56_07770	COG0527	aspartate kinase activity
NJ56_07780	COG3223	Belongs to the PsiE family
NJ56_07785	COG3833	ABC-type maltose transport systems, permease component
NJ56_07790	COG1175	transmembrane transport
NJ56_07795	COG2182	Extracellular solute-binding protein
NJ56_07810	COG4580	involved in the transport of maltose and maltodextrins
NJ56_07830	COG2937	Belongs to the GPAT DAPAT family
NJ56_07835	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
NJ56_07840	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
NJ56_07845	COG0735	belongs to the Fur family
NJ56_07850	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NJ56_07860	COG0604	alcohol dehydrogenase
NJ56_07865	COG0305	Participates in initiation and elongation during chromosome replication
NJ56_07870	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NJ56_07875	COG1448	Aminotransferase
NJ56_07880	COG2315	Protein conserved in bacteria
NJ56_07885	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
NJ56_07900	COG2252	PERMEase
NJ56_07905	COG0025	NhaP-type Na H and K H
NJ56_07910	COG0583	DNA-binding transcription factor activity
NJ56_07915	COG1380	Effector of murein hydrolase LrgA
NJ56_07920	COG1346	cytolysis
NJ56_07930	COG1560	Kdo2-lipid A biosynthetic process
NJ56_07940	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
NJ56_07945	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NJ56_07950	COG2264	protein methyltransferase activity
NJ56_07955	COG4145	pantothenate transmembrane transporter activity
NJ56_07960	COG3924	membrane
NJ56_07965	COG0439	Biotin carboxylase
NJ56_07970	COG0511	ligase activity, forming carbon-carbon bonds
NJ56_07980	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
NJ56_07985	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
NJ56_07990	COG0604	alcohol dehydrogenase
NJ56_07995	COG2200	EAL domain
NJ56_07995	COG2199	diguanylate cyclase activity
NJ56_08000	COG1077	Cell shape determining protein MreB Mrl
NJ56_08005	COG1792	Involved in formation and maintenance of cell shape
NJ56_08010	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
NJ56_08020	COG1530	ribonuclease E activity
NJ56_08025	COG3164	Protein of unknown function
NJ56_08030	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NJ56_08035	COG0312	modulator of DNA gyrase
NJ56_08040	COG0583	DNA-binding transcription factor activity
NJ56_08050	COG1566	PFAM secretion protein HlyD family protein
NJ56_08055	COG1289	transmembrane transporter activity
NJ56_08065	COG4290	ribonuclease
NJ56_08070	COG2732	(Barnase) inhibitor
NJ56_08075	COG3028	Belongs to the UPF0307 family
NJ56_08080	COG0312	modulator of DNA gyrase
NJ56_08085	COG3783	Cytochrome b(562)
NJ56_08090	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NJ56_08105	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
NJ56_08115	COG1263	PTS System
NJ56_08115	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_08120	COG0366	Alpha amylase catalytic
NJ56_08130	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
NJ56_08135	COG0540	Belongs to the ATCase OTCase family
NJ56_08140	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_08150	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_08160	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
NJ56_08165	COG1137	ATPase activity
NJ56_08170	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
NJ56_08175	COG3117	lipopolysaccharide transmembrane transporter activity
NJ56_08180	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
NJ56_08185	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
NJ56_08185	COG0517	IMP dehydrogenase activity
NJ56_08190	COG0530	calcium, potassium:sodium antiporter activity
NJ56_08195	COG1127	ABC transporter
NJ56_08200	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NJ56_08205	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NJ56_08210	COG2854	intermembrane phospholipid transfer
NJ56_08215	COG3113	response to antibiotic
NJ56_08220	COG5007	Belongs to the BolA IbaG family
NJ56_08225	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
NJ56_08235	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NJ56_08240	COG3105	Protein conserved in bacteria
NJ56_08245	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
NJ56_08255	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
NJ56_08260	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
NJ56_08265	COG0625	glutathione transferase activity
NJ56_08270	COG2969	positive regulation of protein catabolic process
NJ56_08280	COG0493	'glutamate synthase
NJ56_08285	COG0069	glutamate synthase activity
NJ56_08285	COG0067	glutamate synthase
NJ56_08285	COG0070	glutamate synthase
NJ56_08290	COG1242	4 iron, 4 sulfur cluster binding
NJ56_08295	COG0784	Response regulator, receiver
NJ56_08295	COG5002	protein histidine kinase activity
NJ56_08295	COG2198	Histidine kinase
NJ56_08305	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
NJ56_08310	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NJ56_08315	COG2823	Periplasmic or secreted lipoprotein
NJ56_08320	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
NJ56_08335	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
NJ56_08345	COG1741	Belongs to the pirin family
NJ56_08350	COG0583	DNA-binding transcription factor activity
NJ56_08355	COG2259	Doxx family
NJ56_08365	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
NJ56_08370	COG4575	ribosome binding
NJ56_08385	COG0586	Pfam SNARE associated Golgi protein
NJ56_08400	COG2271	Major facilitator Superfamily
NJ56_08410	COG0246	Mannitol dehydrogenase
NJ56_08415	COG2721	sulfolactate sulfo-lyase activity
NJ56_08425	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
NJ56_08430	COG0861	Integral membrane protein TerC family
NJ56_08435	COG0673	inositol 2-dehydrogenase activity
NJ56_08440	COG1451	nucleotide metabolic process
NJ56_08455	COG0446	pyridine nucleotide-disulphide oxidoreductase
NJ56_08455	COG1902	pentaerythritol trinitrate reductase activity
NJ56_08460	COG2831	hemolysin activation secretion protein
NJ56_08485	COG0358	DNA primase activity
NJ56_08490	COG4974	Belongs to the 'phage' integrase family
NJ56_08520	COG0358	DNA primase activity
NJ56_08530	COG0358	DNA primase activity
NJ56_08535	COG4974	Belongs to the 'phage' integrase family
NJ56_08590	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NJ56_08605	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_08630	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NJ56_08635	COG0358	DNA primase activity
NJ56_08645	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
NJ56_08650	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
NJ56_08655	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
NJ56_08660	COG1968	undecaprenyl-diphosphatase activity
NJ56_08665	COG0617	tRNA 3'-terminal CCA addition
NJ56_08670	COG4991	sh3 domain protein
NJ56_08675	COG3025	triphosphatase activity
NJ56_08685	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
NJ56_08685	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
NJ56_08700	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NJ56_08705	COG3384	dioxygenase
NJ56_08710	COG0754	glutathionylspermidine amidase activity
NJ56_08715	COG5463	Belongs to the UPF0441 family
NJ56_08720	COG1538	Outer membrane efflux protein
NJ56_08725	COG0494	nUDIX hydrolase
NJ56_08730	COG3151	Protein conserved in bacteria
NJ56_08735	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
NJ56_08740	COG3150	esterase
NJ56_08745	COG0187	DNA topoisomerase II activity
NJ56_08750	COG0583	DNA-binding transcription factor activity
NJ56_08755	COG2249	NAD(P)H dehydrogenase (quinone) activity
NJ56_08765	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
NJ56_08770	COG0204	Acyl-transferase
NJ56_08775	COG2132	Multicopper oxidase
NJ56_08785	COG0656	L-ascorbic acid biosynthetic process
NJ56_08790	COG1979	alcohol dehydrogenase
NJ56_08795	COG2207	Transcriptional regulator
NJ56_08800	COG0586	Pfam SNARE associated Golgi protein
NJ56_08805	COG0626	cystathionine gamma-synthase activity
NJ56_08810	COG0811	peptide transport
NJ56_08815	COG0848	biopolymer transport protein
NJ56_08865	COG4964	Belongs to the GSP D family
NJ56_08890	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
NJ56_08895	COG4774	siderophore transport
NJ56_08905	COG3251	PFAM MbtH domain protein
NJ56_08910	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NJ56_08920	COG1120	ATPase activity
NJ56_08925	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJ56_08930	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJ56_08940	COG4592	Periplasmic binding protein
NJ56_08945	COG1169	isochorismate synthase
NJ56_08950	COG1021	2,3-dihydroxybenzoate-AMP ligase
NJ56_08955	COG1535	isochorismatase
NJ56_08955	COG3433	isochorismatase activity
NJ56_08960	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_08975	COG0814	amino acid
NJ56_08980	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
NJ56_08985	COG1882	Formate acetyltransferase
NJ56_08990	COG1105	Belongs to the carbohydrate kinase PfkB family
NJ56_09000	COG1349	DNA-binding transcription factor activity
NJ56_09005	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_09010	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_09015	COG3731	PTS system glucitol sorbitol-specific IIA component
NJ56_09020	COG3732	PTS system glucitol sorbitol-specific
NJ56_09025	COG3730	PTS system glucitol sorbitol-specific
NJ56_09050	COG0741	lytic transglycosylase activity
NJ56_09055	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
NJ56_09060	COG1194	a g-specific adenine glycosylase
NJ56_09070	COG3171	Protein conserved in bacteria
NJ56_09075	COG2066	Belongs to the glutaminase family
NJ56_09085	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NJ56_09090	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
NJ56_09095	COG1872	DUF167
NJ56_09100	COG0762	integral membrane protein
NJ56_09105	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
NJ56_09110	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
NJ56_09115	COG2805	Type II/IV secretion system protein
NJ56_09125	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NJ56_09130	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
NJ56_09135	COG1678	Uncharacterized ACR, COG1678
NJ56_09140	COG0189	ligase activity
NJ56_09145	COG1385	rRNA (uridine-N3-)-methyltransferase activity
NJ56_09150	COG2356	endonuclease I
NJ56_09155	COG3091	SprT-like family
NJ56_09160	COG0640	Transcriptional regulator
NJ56_09175	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
NJ56_09180	COG1166	arginine decarboxylase activity
NJ56_09190	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
NJ56_09195	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NJ56_09200	COG0126	phosphoglycerate kinase activity
NJ56_09205	COG0191	fructose-bisphosphate aldolase activity
NJ56_09215	COG1279	arginine transmembrane transporter activity
NJ56_09230	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
NJ56_09235	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NJ56_09240	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
NJ56_09250	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
NJ56_09260	COG0006	proline dipeptidase activity
NJ56_09265	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NJ56_09270	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NJ56_09275	COG0404	The glycine cleavage system catalyzes the degradation of glycine
NJ56_09295	COG1272	protein, Hemolysin III
NJ56_09305	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
NJ56_09315	COG0716	FMN binding
NJ56_09320	COG4974	Belongs to the 'phage' integrase family
NJ56_09325	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NJ56_09330	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
NJ56_09340	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
NJ56_09350	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NJ56_09355	COG1127	ABC transporter
NJ56_09385	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NJ56_09395	COG2165	general secretion pathway protein
NJ56_09410	COG4795	General secretion pathway protein
NJ56_09450	COG0583	DNA-binding transcription factor activity
NJ56_09455	COG0583	DNA-binding transcription factor activity
NJ56_09460	COG0019	diaminopimelate decarboxylase activity
NJ56_09465	COG1609	Transcriptional regulator
NJ56_09470	COG0204	Acyl-transferase
NJ56_09470	COG0318	PFAM AMP-dependent synthetase and ligase
NJ56_09475	COG0477	Major facilitator Superfamily
NJ56_09480	COG0667	Aldo Keto reductase
NJ56_09485	COG0861	Integral membrane protein TerC family
NJ56_09490	COG3066	DNA modification
NJ56_09505	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
NJ56_09510	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
NJ56_09540	COG4967	type IV pilus modification protein PilV
NJ56_09545	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
NJ56_09550	COG1025	Belongs to the peptidase M16 family
NJ56_09555	COG1074	ATP-dependent DNA helicase activity
NJ56_09560	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
NJ56_09565	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
NJ56_09565	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NJ56_09570	COG0860	N-Acetylmuramoyl-L-alanine amidase
NJ56_09590	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
NJ56_09595	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
NJ56_09600	COG2166	iron-sulfur cluster assembly
NJ56_09605	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NJ56_09615	COG0583	DNA-binding transcription factor activity
NJ56_09620	COG2363	Small membrane protein
NJ56_09625	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
NJ56_09635	COG1611	Belongs to the LOG family
NJ56_09650	COG3098	single-species biofilm formation
NJ56_09655	COG0564	pseudouridine synthase activity
NJ56_09670	COG2171	N-acyltransferase activity
NJ56_09675	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
NJ56_09680	COG0024	Methionine aminopeptidase
NJ56_09690	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
NJ56_09695	COG0528	UMP kinase activity
NJ56_09710	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
NJ56_09715	COG0575	Belongs to the CDS family
NJ56_09720	COG0750	zinc metalloprotease
NJ56_09730	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
NJ56_09735	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NJ56_09750	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NJ56_09755	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
NJ56_09760	COG0587	DNA-directed DNA polymerase activity
NJ56_09765	COG0825	malonyl-CoA metabolic process
NJ56_09785	COG0346	lactoylglutathione lyase activity
NJ56_09790	COG0037	tRNA processing
NJ56_09800	COG4568	rho-dependent transcription termination
NJ56_09810	COG4681	YaeQ
NJ56_09820	COG3015	lipoprotein NlpE involved in copper resistance
NJ56_09825	COG0442	prolyl-tRNA aminoacylation
NJ56_09830	COG1720	tRNA m6t6A37 methyltransferase activity
NJ56_09840	COG1464	Belongs to the NlpA lipoprotein family
NJ56_09845	COG2011	ABC-type metal ion transport system permease component
NJ56_09855	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
NJ56_09880	COG5544	Lipoprotein
NJ56_09885	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NJ56_09890	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NJ56_09890	COG1042	CoA-binding domain protein
NJ56_09890	COG0045	succinate-CoA ligase (ADP-forming) activity
NJ56_09900	COG3118	belongs to the thioredoxin family
NJ56_09905	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NJ56_09910	COG2814	Major facilitator Superfamily
NJ56_09915	COG1566	PFAM secretion protein HlyD family protein
NJ56_09925	COG1846	Transcriptional regulator
NJ56_09930	COG2814	Major facilitator Superfamily
NJ56_09940	COG2113	Glycine betaine
NJ56_09945	COG4176	ABC-type proline glycine betaine transport system permease component
NJ56_09950	COG4175	Glycine betaine
NJ56_09960	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NJ56_09965	COG1780	Probably involved in ribonucleotide reductase function
NJ56_09995	COG1278	Cold shock
NJ56_10000	COG0579	oxidoreductase
NJ56_10005	COG1304	FMN binding
NJ56_10010	COG1620	l-lactate permease
NJ56_10030	COG1129	ABC transporter
NJ56_10035	COG1172	Belongs to the binding-protein-dependent transport system permease family
NJ56_10045	COG1069	ribulokinase activity
NJ56_10120	COG0583	DNA-binding transcription factor activity
NJ56_10150	COG3121	Chaperone
NJ56_10245	COG0582	viral genome integration into host DNA
NJ56_10255	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
NJ56_10260	COG2867	negative regulation of translational initiation
NJ56_10270	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NJ56_10275	COG0497	DNA recombination
NJ56_10280	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
NJ56_10290	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
NJ56_10300	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
NJ56_10315	COG0513	Belongs to the DEAD box helicase family
NJ56_10325	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
NJ56_10335	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
NJ56_10345	COG3086	response to oxidative stress
NJ56_10350	COG0481	GTPase activity
NJ56_10355	COG0681	Belongs to the peptidase S26 family
NJ56_10365	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
NJ56_10375	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
NJ56_10385	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJ56_10390	COG1737	Transcriptional regulator
NJ56_10400	COG1263	PTS System
NJ56_10400	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_10405	COG0560	Phosphoserine phosphatase
NJ56_10410	COG0590	tRNA wobble adenosine to inosine editing
NJ56_10415	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
NJ56_10435	COG2205	protein histidine kinase activity
NJ56_10440	COG3170	Tfp pilus assembly protein FimV
NJ56_10445	COG2204	response regulator
NJ56_10450	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
NJ56_10450	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NJ56_10455	COG0347	Belongs to the P(II) protein family
NJ56_10470	COG1735	metal-dependent hydrolase with the TIM-barrel fold
NJ56_10475	COG3457	Alanine racemase
NJ56_10485	COG2188	Transcriptional regulator
NJ56_10490	COG1017	nitric oxide dioxygenase activity
NJ56_10490	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NJ56_10500	COG2814	Major facilitator Superfamily
NJ56_10505	COG3711	transcriptional antiterminator
NJ56_10510	COG3683	transport system, periplasmic component
NJ56_10515	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
NJ56_10525	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
NJ56_10530	COG1959	2 iron, 2 sulfur cluster binding
NJ56_10540	COG0822	iron-sulfur transferase activity
NJ56_10555	COG0443	Heat shock 70 kDa protein
NJ56_10560	COG0633	Ferredoxin
NJ56_10565	COG2975	iron-sulfur cluster assembly
NJ56_10580	COG2373	Large extracellular alpha-helical protein
NJ56_10585	COG4953	penicillin-binding protein 1C
NJ56_10620	COG0124	histidyl-tRNA synthetase
NJ56_10625	COG2976	Protein conserved in bacteria
NJ56_10630	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NJ56_10640	COG1645	bacterial-type flagellum-dependent swarming motility
NJ56_10645	COG1570	exodeoxyribonuclease VII activity
NJ56_10650	COG0516	GMP reductase activity
NJ56_10650	COG0517	IMP dehydrogenase activity
NJ56_10655	COG0518	GMP synthase (glutamine-hydrolyzing) activity
NJ56_10655	COG0519	Catalyzes the synthesis of GMP from XMP
NJ56_10695	COG0351	phosphomethylpyrimidine kinase
NJ56_10710	COG1597	lipid kinase activity
NJ56_10720	COG3422	double-strand break repair
NJ56_10725	COG0745	RESPONSE REGULATOR receiver
NJ56_10730	COG2205	protein histidine kinase activity
NJ56_10735	COG0477	Major facilitator Superfamily
NJ56_10740	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJ56_10750	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJ56_10775	COG3121	Chaperone
NJ56_10785	COG0443	Heat shock 70 kDa protein
NJ56_10790	COG2239	Acts as a magnesium transporter
NJ56_10800	COG0248	Ppx GppA phosphatase
NJ56_10805	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
NJ56_10810	COG0573	inorganic phosphate transmembrane transporter activity
NJ56_10815	COG0581	inorganic phosphate transmembrane transporter activity
NJ56_10825	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NJ56_10830	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
NJ56_10840	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
NJ56_10850	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
NJ56_10855	COG2233	PERMEase
NJ56_10860	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
NJ56_10865	COG1393	Belongs to the ArsC family
NJ56_10870	COG4783	chaperone-mediated protein folding
NJ56_10875	COG0628	permease
NJ56_10880	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
NJ56_10885	COG2716	regulation of RNA biosynthetic process
NJ56_10890	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NJ56_10895	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
NJ56_10915	COG0400	carboxylic ester hydrolase activity
NJ56_10925	COG1876	peptidase activity
NJ56_10930	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
NJ56_10935	COG1393	Belongs to the ArsC family
NJ56_10940	COG1605	Chorismate mutase
NJ56_10950	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJ56_10960	COG2197	response regulator
NJ56_10970	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJ56_10970	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJ56_10975	COG3062	negative regulation of establishment of protein localization
NJ56_10980	COG0243	molybdopterin cofactor binding
NJ56_10985	COG3043	anaerobic respiration
NJ56_10990	COG3005	denitrification pathway
NJ56_10995	COG0494	nUDIX hydrolase
NJ56_11000	COG0281	malic enzyme
NJ56_11000	COG0280	phosphate acetyltransferase
NJ56_11005	COG1671	Belongs to the UPF0178 family
NJ56_11070	COG3111	PFAM Bacterial OB fold (BOF) protein
NJ56_11080	COG2837	iron assimilation
NJ56_11085	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NJ56_11100	COG2731	YhcH YjgK YiaL family protein
NJ56_11105	COG1737	Transcriptional regulator
NJ56_11115	COG4150	thiosulfate binding
NJ56_11120	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
NJ56_11125	COG4208	sulfate ABC transporter
NJ56_11135	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NJ56_11140	COG2190	(PTS) system
NJ56_11150	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_11155	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NJ56_11160	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
NJ56_11170	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NJ56_11175	COG3530	Putative quorum-sensing-regulated virulence factor
NJ56_11240	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NJ56_11245	COG1914	H( )-stimulated, divalent metal cation uptake system
NJ56_11265	COG0837	glucose binding
NJ56_11270	COG2223	nitrite transmembrane transporter activity
NJ56_11275	COG3279	Response regulator of the LytR AlgR family
NJ56_11280	COG3275	phosphorelay sensor kinase activity
NJ56_11290	COG0436	Aminotransferase
NJ56_11295	COG3038	cytochrome b561
NJ56_11305	COG1598	PFAM Uncharacterised protein family UPF0150
NJ56_11310	COG2951	lytic endotransglycosylase activity
NJ56_11315	COG2824	Alkylphosphonate utilization operon protein PhnA
NJ56_11335	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NJ56_11340	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NJ56_11345	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NJ56_11350	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
NJ56_11355	COG1138	Cytochrome C-type biogenesis protein
NJ56_11360	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NJ56_11365	COG4235	cytochrome complex assembly
NJ56_11365	COG3088	subunit of a heme lyase
NJ56_11370	COG4235	cytochrome complex assembly
NJ56_11370	COG3088	subunit of a heme lyase
NJ56_11385	COG3691	Protein conserved in bacteria
NJ56_11390	COG0183	Belongs to the thiolase family
NJ56_11395	COG1250	3-hydroxyacyl-CoA dehydrogenase
NJ56_11395	COG1024	Enoyl-CoA hydratase
NJ56_11405	COG2062	phosphohistidine phosphatase, SixA
NJ56_11410	COG2840	Smr protein MutS2
NJ56_11415	COG2890	protein-(glutamine-N5) methyltransferase activity
NJ56_11425	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
NJ56_11430	COG0730	response to heat
NJ56_11435	COG3101	peptidyl-lysine hydroxylation
NJ56_11450	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NJ56_11480	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NJ56_11485	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NJ56_11510	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
NJ56_11520	COG0586	Pfam SNARE associated Golgi protein
NJ56_11530	COG0285	dihydrofolate synthase activity
NJ56_11535	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
NJ56_11540	COG1286	toxin biosynthetic process
NJ56_11545	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
NJ56_11550	COG0163	prenyltransferase activity
NJ56_11555	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_11560	COG4215	(ABC) transporter
NJ56_11565	COG4160	amino acid transport
NJ56_11575	COG1090	epimerase
NJ56_11580	COG0625	glutathione transferase activity
NJ56_11590	COG0622	Phosphoesterase
NJ56_11595	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
NJ56_11600	COG3037	sugar-specific permease SgaT UlaA
NJ56_11615	COG1609	Transcriptional regulator
NJ56_11620	COG0280	phosphate acetyltransferase
NJ56_11620	COG0857	belongs to the CobB CobQ family
NJ56_11630	COG3092	negative regulation of chromosome organization
NJ56_11635	COG3013	Belongs to the UPF0304 family
NJ56_11645	COG0490	domain, Protein
NJ56_11645	COG0471	metal ion transport
NJ56_11650	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
NJ56_11655	COG0436	Aminotransferase
NJ56_11665	COG0583	DNA-binding transcription factor activity
NJ56_11670	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_11675	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_11685	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
NJ56_11695	COG1034	ATP synthesis coupled electron transport
NJ56_11700	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
NJ56_11705	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_11710	COG0839	Belongs to the complex I subunit 6 family
NJ56_11720	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
NJ56_11725	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_11740	COG4575	ribosome binding
NJ56_11745	COG1169	isochorismate synthase
NJ56_11750	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
NJ56_11755	COG0596	Alpha beta hydrolase
NJ56_11760	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
NJ56_11785	COG0814	amino acid
NJ56_11800	COG2246	polysaccharide biosynthetic process
NJ56_11810	COG4574	serine-type endopeptidase inhibitor activity
NJ56_11820	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NJ56_11830	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NJ56_11835	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NJ56_11845	COG2205	protein histidine kinase activity
NJ56_11845	COG0784	Response regulator, receiver
NJ56_11855	COG2198	Histidine kinase
NJ56_11855	COG0642	Histidine kinase
NJ56_11860	COG2223	nitrite transmembrane transporter activity
NJ56_11880	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NJ56_11885	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
NJ56_11930	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
NJ56_11935	COG5532	Uncharacterized conserved protein (DUF2303)
NJ56_11980	COG1802	Transcriptional regulator
NJ56_11980	COG4626	Terminase
NJ56_11985	COG4725	Belongs to the MT-A70-like family
NJ56_12005	COG1403	HNH endonuclease
NJ56_12020	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
NJ56_12035	COG3179	chitinase
NJ56_12050	COG3646	Phage regulatory protein
NJ56_12065	COG1802	Transcriptional regulator
NJ56_12065	COG4626	Terminase
NJ56_12110	COG4386	tail sheath protein
NJ56_12155	COG3299	homolog of phage Mu protein gp47
NJ56_12160	COG3778	Protein conserved in bacteria
NJ56_12190	COG3083	sulfuric ester hydrolase activity
NJ56_12195	COG3082	Protein of unknown function (DUF1414)
NJ56_12210	COG1061	Type III restriction enzyme res subunit
NJ56_12215	COG1187	pseudouridine synthase activity
NJ56_12220	COG2814	Major facilitator Superfamily
NJ56_12230	COG4172	Belongs to the ABC transporter superfamily
NJ56_12235	COG4239	(ABC) transporter, permease
NJ56_12240	COG4174	ABC transporter (Permease)
NJ56_12245	COG4166	transmembrane transport
NJ56_12250	COG2200	EAL domain
NJ56_12255	COG0791	NLP P60 protein
NJ56_12260	COG0671	phosphoesterase, PA-phosphatase related
NJ56_12265	COG0523	cobalamin synthesis protein
NJ56_12280	COG0246	Mannitol dehydrogenase
NJ56_12290	COG1312	Catalyzes the dehydration of D-mannonate
NJ56_12295	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
NJ56_12310	COG0243	molybdopterin cofactor binding
NJ56_12315	COG3005	denitrification pathway
NJ56_12330	COG1105	Belongs to the carbohydrate kinase PfkB family
NJ56_12335	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NJ56_12335	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NJ56_12335	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
NJ56_12340	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
NJ56_12345	COG2855	membrane
NJ56_12360	COG0583	DNA-binding transcription factor activity
NJ56_12365	COG0833	amino acid
NJ56_12375	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJ56_12385	COG4771	TonB-dependent receptor
NJ56_12395	COG0531	amino acid
NJ56_12400	COG2925	Exonuclease
NJ56_12410	COG1289	transmembrane transporter activity
NJ56_12485	COG4227	nucleotidyltransferase activity
NJ56_12505	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
NJ56_12515	COG3504	Conjugal transfer protein
NJ56_12520	COG3736	Type IV secretory pathway, component VirB8
NJ56_12540	COG3451	type IV secretory pathway VirB4
NJ56_12575	COG3423	Transcriptional regulator
NJ56_12590	COG0582	viral genome integration into host DNA
NJ56_12605	COG3842	ATPase activity
NJ56_12615	COG1840	ABC-type Fe3 transport system, periplasmic component
NJ56_12620	COG2271	Major facilitator Superfamily
NJ56_12635	COG4565	transcriptional regulatory protein
NJ56_12640	COG3290	protein histidine kinase activity
NJ56_12645	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
NJ56_12650	COG3052	prosthetic group binding
NJ56_12655	COG2301	Belongs to the HpcH HpaI aldolase family
NJ56_12660	COG3051	citrate lyase alpha subunit
NJ56_12675	COG0471	metal ion transport
NJ56_12720	COG0604	alcohol dehydrogenase
NJ56_12720	COG3321	synthase
NJ56_12720	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_12730	COG1609	Transcriptional regulator
NJ56_12740	COG1278	Cold shock
NJ56_12750	COG0840	transmembrane signaling receptor activity
NJ56_12755	COG1285	pathogenesis
NJ56_12765	COG0589	response to stress
NJ56_12790	COG1360	Flagellar Motor Protein
NJ56_12795	COG2198	Histidine kinase
NJ56_12795	COG0643	Histidine kinase
NJ56_12800	COG0835	chemotaxis
NJ56_12805	COG0840	transmembrane signaling receptor activity
NJ56_12810	COG0840	transmembrane signaling receptor activity
NJ56_12815	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
NJ56_12825	COG0745	RESPONSE REGULATOR receiver
NJ56_12830	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
NJ56_12860	COG3539	Fimbrial protein
NJ56_12870	COG3121	Chaperone
NJ56_12875	COG3188	usher protein
NJ56_12895	COG2197	response regulator
NJ56_12905	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
NJ56_12910	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
NJ56_12920	COG3418	PFAM FlgN family protein
NJ56_12925	COG2747	anti-sigma28 factor FlgM
NJ56_12935	COG1815	bacterial-type flagellum-dependent cell motility
NJ56_12940	COG1558	bacterial-type flagellum-dependent cell motility
NJ56_12945	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
NJ56_12950	COG1749	Flagellar hook protein flgE
NJ56_12960	COG4786	Flagellar basal body rod
NJ56_12980	COG1256	bacterial-type flagellum assembly
NJ56_13020	COG1580	Controls the rotational direction of flagella during chemotaxis
NJ56_13035	COG2882	bacterial-type flagellum organization
NJ56_13040	COG1157	protein secretion by the type III secretion system
NJ56_13050	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
NJ56_13060	COG1677	Flagellar hook-basal body complex protein FliE
NJ56_13075	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NJ56_13080	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
NJ56_13120	COG1191	sigma factor activity
NJ56_13130	COG2515	1-aminocyclopropane-1-carboxylate deaminase
NJ56_13150	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
NJ56_13150	COG0506	proline dehydrogenase activity
NJ56_13150	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
NJ56_13155	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NJ56_13160	COG3710	Transcriptional regulator
NJ56_13165	COG0531	amino acid
NJ56_13170	COG1982	Orn Lys Arg decarboxylase major
NJ56_13175	COG1113	amino acid transport
NJ56_13185	COG0582	viral genome integration into host DNA
NJ56_13200	COG2197	response regulator
NJ56_13205	COG0322	excinuclease ABC activity
NJ56_13210	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NJ56_13270	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
NJ56_13305	COG2856	Zn peptidase
NJ56_13375	COG4695	Portal protein
NJ56_13425	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NJ56_13430	COG4974	Belongs to the 'phage' integrase family
NJ56_13540	COG2801	Transposase and inactivated derivatives
NJ56_13545	COG0840	transmembrane signaling receptor activity
NJ56_13580	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
NJ56_13590	COG2153	protein acetylation
NJ56_13625	COG0531	amino acid
NJ56_13630	COG0076	glutamate decarboxylase activity
NJ56_13645	COG2235	arginine
NJ56_13665	COG3122	Protein conserved in bacteria
NJ56_13675	COG1187	pseudouridine synthase activity
NJ56_13685	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
NJ56_13690	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
NJ56_13695	COG2723	6-phospho-beta-galactosidase activity
NJ56_13700	COG1447	Phosphotransferase system cellobiose-specific component IIA
NJ56_13705	COG1917	Cupin 2, conserved barrel domain protein
NJ56_13705	COG2169	Transcriptional regulator
NJ56_13735	COG1278	Cold shock
NJ56_13740	COG1278	Cold shock
NJ56_13745	COG1278	Cold shock
NJ56_13765	COG1181	Belongs to the D-alanine--D-alanine ligase family
NJ56_13785	COG5001	Diguanylate cyclase
NJ56_13785	COG4251	negative regulation of phosphorylation
NJ56_13785	COG3706	GGDEF domain
NJ56_13785	COG2203	Gaf domain
NJ56_13795	COG1132	(ABC) transporter
NJ56_13805	COG2207	Transcriptional regulator
NJ56_13840	COG1113	amino acid transport
NJ56_13855	COG1278	Cold shock
NJ56_13865	COG0768	penicillin binding
NJ56_13870	COG2226	methyltransferase
NJ56_13900	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
NJ56_13910	COG1960	acyl-CoA dehydrogenase activity
NJ56_13930	COG1971	Probably functions as a manganese efflux pump
NJ56_13935	COG4811	Protein of unknown function (DUF986)
NJ56_13940	COG3716	PTS system mannose fructose sorbose family IID component
NJ56_13945	COG3715	PTS system
NJ56_13950	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_13950	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_13955	COG1253	flavin adenine dinucleotide binding
NJ56_13960	COG1760	l-serine dehydratase
NJ56_13965	COG0494	nUDIX hydrolase
NJ56_13985	COG0513	Belongs to the DEAD box helicase family
NJ56_13990	COG3141	response to X-ray
NJ56_14005	COG1770	oligopeptidase
NJ56_14010	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NJ56_14025	COG1528	Iron-storage protein
NJ56_14030	COG2372	response to copper ion
NJ56_14035	COG1276	copper resistance
NJ56_14105	COG3706	GGDEF domain
NJ56_14105	COG5001	Diguanylate cyclase
NJ56_14105	COG4251	negative regulation of phosphorylation
NJ56_14105	COG2203	Gaf domain
NJ56_14110	COG3008	intermembrane lipid transfer
NJ56_14115	COG2995	paraquat-inducible protein a
NJ56_14120	COG1956	GAF domain-containing protein
NJ56_14130	COG0793	Belongs to the peptidase S41A family
NJ56_14135	COG0501	Belongs to the peptidase M48B family
NJ56_14145	COG2814	Major facilitator Superfamily
NJ56_14155	COG3023	N-Acetylmuramoyl-L-alanine amidase
NJ56_14165	COG1988	membrane-bound metal-dependent
NJ56_14170	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NJ56_14185	COG1108	ABC-type Mn2 Zn2 transport systems permease components
NJ56_14190	COG1108	ABC-type Mn2 Zn2 transport systems permease components
NJ56_14195	COG1121	(ABC) transporter
NJ56_14200	COG0803	Belongs to the bacterial solute-binding protein 9 family
NJ56_14275	COG0776	regulation of translation
NJ56_14280	COG2314	TM2 domain
NJ56_14295	COG2184	nucleotidyltransferase activity
NJ56_14315	COG4974	Belongs to the 'phage' integrase family
NJ56_14320	COG4139	cobalamin transport
NJ56_14325	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
NJ56_14330	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
NJ56_14335	COG0463	Glycosyl transferase, family 2
NJ56_14350	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
NJ56_14355	COG2076	Multidrug Resistance protein
NJ56_14360	COG2076	Multidrug Resistance protein
NJ56_14365	COG0791	NLP P60 protein
NJ56_14370	COG0095	Lipoate-protein ligase
NJ56_14380	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
NJ56_14385	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJ56_14390	COG4558	Periplasmic binding protein
NJ56_14395	COG3720	iron ion transport
NJ56_14400	COG4771	TonB-dependent receptor
NJ56_14410	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NJ56_14415	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
NJ56_14420	COG0574	Belongs to the PEP-utilizing enzyme family
NJ56_14420	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NJ56_14430	COG0628	permease
NJ56_14435	COG0277	FAD linked oxidase domain protein
NJ56_14435	COG0247	lactate metabolic process
NJ56_14440	COG2050	protein possibly involved in aromatic compounds catabolism
NJ56_14445	COG0316	Belongs to the HesB IscA family
NJ56_14450	COG0719	Fe-S assembly protein
NJ56_14455	COG0396	ATPase activity
NJ56_14460	COG0719	Fe-S assembly protein
NJ56_14470	COG2166	iron-sulfur cluster assembly
NJ56_14475	COG1388	LysM domain
NJ56_14475	COG1376	ErfK ybiS ycfS ynhG family protein
NJ56_14480	COG4238	major outer membrane lipoprotein
NJ56_14485	COG0469	pyruvate kinase activity
NJ56_14510	COG0307	riboflavin synthase, alpha
NJ56_14515	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NJ56_14520	COG2814	Major facilitator Superfamily
NJ56_14525	COG0583	DNA-binding transcription factor activity
NJ56_14530	COG1609	Transcriptional regulator
NJ56_14540	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
NJ56_14545	COG0791	NLP P60 protein
NJ56_14550	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NJ56_14560	COG0346	lactoylglutathione lyase activity
NJ56_14565	COG1902	pentaerythritol trinitrate reductase activity
NJ56_14570	COG1309	transcriptional regulator
NJ56_14575	COG2194	sulfuric ester hydrolase activity
NJ56_14580	COG3313	Fe-S protein
NJ56_14585	COG4989	oxidoreductase activity
NJ56_14595	COG1846	Transcriptional regulator
NJ56_14600	COG3133	Outer membrane lipoprotein
NJ56_14605	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
NJ56_14650	COG0484	heat shock protein binding
NJ56_14660	COG3104	oligopeptide transport
NJ56_14670	COG4172	Belongs to the ABC transporter superfamily
NJ56_14675	COG4172	Belongs to the ABC transporter superfamily
NJ56_14680	COG4171	peptide transport system, permease
NJ56_14685	COG4168	peptide transport system, permease
NJ56_14690	COG4166	transmembrane transport
NJ56_14710	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
NJ56_14715	COG1842	Phage shock protein A
NJ56_14725	COG1983	PspC domain protein
NJ56_14735	COG3106	COG3106 Predicted ATPase
NJ56_14740	COG3768	UPF0283 membrane protein
NJ56_14760	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
NJ56_14765	COG4948	Mandelate Racemase Muconate Lactonizing
NJ56_14770	COG2866	Carboxypeptidase
NJ56_14775	COG4166	transmembrane transport
NJ56_14790	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_14790	COG1013	pyruvate-flavodoxin oxidoreductase activity
NJ56_14790	COG0674	pyruvate-flavodoxin oxidoreductase activity
NJ56_14790	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
NJ56_14800	COG1285	pathogenesis
NJ56_14805	COG3042	response to heat
NJ56_14810	COG3187	Heat shock protein
NJ56_14815	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NJ56_14820	COG2911	Protein conserved in bacteria
NJ56_14835	COG3784	Protein of unknown function (DUF1318)
NJ56_14840	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
NJ56_14850	COG1643	Atp-dependent helicase
NJ56_14855	COG3591	Belongs to the peptidase S1B family
NJ56_14865	COG1881	PFAM PEBP family protein
NJ56_14870	COG2207	Transcriptional regulator
NJ56_14885	COG2205	protein histidine kinase activity
NJ56_14890	COG0745	RESPONSE REGULATOR receiver
NJ56_14900	COG0531	amino acid
NJ56_14910	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
NJ56_14915	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
NJ56_14920	COG3623	hexulose-6-phosphate isomerase
NJ56_14925	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
NJ56_14955	COG0589	response to stress
NJ56_14960	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NJ56_14965	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
NJ56_14970	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
NJ56_14980	COG1011	Hydrolase
NJ56_15020	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NJ56_15045	COG3023	N-Acetylmuramoyl-L-alanine amidase
NJ56_15050	COG4221	oxidoreductase activity
NJ56_15055	COG1742	UPF0060 membrane protein
NJ56_15075	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
NJ56_15080	COG1940	carbohydrate kinase activity
NJ56_15090	COG0114	fumarate hydratase activity
NJ56_15095	COG1482	cell wall glycoprotein biosynthetic process
NJ56_15100	COG5339	Protein conserved in bacteria
NJ56_15105	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
NJ56_15110	COG0385	Bile acid
NJ56_15115	COG0673	inositol 2-dehydrogenase activity
NJ56_15125	COG2759	Belongs to the formate--tetrahydrofolate ligase family
NJ56_15135	COG4657	Part of a membrane complex involved in electron transport
NJ56_15150	COG2207	Transcriptional regulator
NJ56_15150	COG3708	Transcriptional regulator
NJ56_15160	COG4659	FMN binding
NJ56_15170	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
NJ56_15175	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
NJ56_15180	COG5002	protein histidine kinase activity
NJ56_15180	COG5001	Diguanylate cyclase
NJ56_15180	COG3447	MASE1 domain protein
NJ56_15185	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NJ56_15195	COG0023	Translation Initiation Factor
NJ56_15215	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
NJ56_15220	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
NJ56_15225	COG0671	phosphoesterase, PA-phosphatase related
NJ56_15230	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NJ56_15235	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
NJ56_15250	COG0583	DNA-binding transcription factor activity
NJ56_15255	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NJ56_15270	COG0616	signal peptide processing
NJ56_15275	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_15285	COG1187	pseudouridine synthase activity
NJ56_15290	COG0009	L-threonylcarbamoyladenylate synthase
NJ56_15295	COG0613	PHP domain protein
NJ56_15305	COG0512	Glutamine amidotransferase of anthranilate synthase
NJ56_15315	COG0135	phosphoribosylanthranilate isomerase activity
NJ56_15315	COG0134	indole-3-glycerol-phosphate synthase activity
NJ56_15320	COG0133	tryptophan synthase activity
NJ56_15335	COG3047	cAMP biosynthetic process
NJ56_15360	COG1607	acyl-coa hydrolase
NJ56_15365	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
NJ56_15400	COG3710	Transcriptional regulator
NJ56_15415	COG2350	Protein conserved in bacteria
NJ56_15435	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NJ56_15440	COG3099	Belongs to the UPF0263 family
NJ56_15455	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NJ56_15470	COG4166	transmembrane transport
NJ56_15480	COG2095	MarC family integral membrane protein
NJ56_15490	COG1454	alcohol dehydrogenase
NJ56_15490	COG1012	belongs to the aldehyde dehydrogenase family
NJ56_15495	COG1435	thymidine kinase activity
NJ56_15510	COG0745	RESPONSE REGULATOR receiver
NJ56_15515	COG1752	Esterase of the alpha-beta hydrolase superfamily
NJ56_15525	COG0788	formyltetrahydrofolate deformylase activity
NJ56_15555	COG0708	Exodeoxyribonuclease III
NJ56_15560	COG0494	nUDIX hydrolase
NJ56_15570	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NJ56_15580	COG0778	Nitroreductase
NJ56_15585	COG0616	signal peptide processing
NJ56_15590	COG0252	asparaginase activity
NJ56_15595	COG1335	isochorismatase
NJ56_15600	COG3139	Protein of unknown function (DUF1315)
NJ56_15605	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NJ56_15620	COG2194	sulfuric ester hydrolase activity
NJ56_15625	COG2194	sulfuric ester hydrolase activity
NJ56_15630	COG3713	MltA-interacting MipA family protein
NJ56_15640	COG2766	serine protein kinase
NJ56_15645	COG2718	Belongs to the UPF0229 family
NJ56_15665	COG2199	diguanylate cyclase activity
NJ56_15665	COG2200	EAL domain
NJ56_15665	COG2202	Pas domain
NJ56_15675	COG2814	Major facilitator Superfamily
NJ56_15680	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NJ56_15685	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NJ56_15690	COG2719	SpoVR family
NJ56_15700	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NJ56_15720	COG2983	Belongs to the UPF0260 family
NJ56_15725	COG0179	Fumarylacetoacetate (FAA) hydrolase
NJ56_15730	COG3100	YcgL domain-containing protein
NJ56_15735	COG0850	regulation of cytokinetic process
NJ56_15740	COG2894	cell division
NJ56_15745	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
NJ56_15750	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
NJ56_15755	COG0318	PFAM AMP-dependent synthetase and ligase
NJ56_15760	COG3065	identical protein binding
NJ56_15765	COG1214	PFAM Peptidase M22, glycoprotease
NJ56_15770	COG1199	ATP-dependent helicase activity
NJ56_15775	COG0251	oxidation-reduction process
NJ56_15780	COG2076	Multidrug Resistance protein
NJ56_15790	COG0800	Aldolase
NJ56_15795	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
NJ56_15800	COG1737	Transcriptional regulator
NJ56_15805	COG0469	pyruvate kinase activity
NJ56_15810	COG1560	Kdo2-lipid A biosynthetic process
NJ56_15815	COG0739	heme binding
NJ56_15820	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
NJ56_15825	COG1121	(ABC) transporter
NJ56_15830	COG1108	ABC-type Mn2 Zn2 transport systems permease components
NJ56_15835	COG3104	oligopeptide transport
NJ56_15840	COG2255	four-way junction helicase activity
NJ56_15850	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
NJ56_15860	COG0494	nUDIX hydrolase
NJ56_15865	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
NJ56_15875	COG1801	Protein of unknown function DUF72
NJ56_15880	COG3788	relative of glutathione S-transferase, MAPEG superfamily
NJ56_15895	COG3142	Participates in the control of copper homeostasis
NJ56_15900	COG3102	Protein conserved in bacteria
NJ56_15925	COG0728	peptidoglycan biosynthetic process
NJ56_15930	COG0673	inositol 2-dehydrogenase activity
NJ56_15940	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NJ56_15960	COG3381	protein complex oligomerization
NJ56_15970	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NJ56_15995	COG3706	GGDEF domain
NJ56_16000	COG0659	secondary active sulfate transmembrane transporter activity
NJ56_16005	COG2877	3-deoxy-8-phosphooctulonate synthase activity
NJ56_16010	COG2912	Transglutaminase-like superfamily
NJ56_16015	COG3094	Invasion gene expression up-regulator, SirB
NJ56_16020	COG2890	protein-(glutamine-N5) methyltransferase activity
NJ56_16025	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
NJ56_16030	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
NJ56_16035	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
NJ56_16045	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NJ56_16055	COG0193	aminoacyl-tRNA hydrolase activity
NJ56_16065	COG0012	GTP binding
NJ56_16080	COG0309	Hydrogenase expression formation protein (HypE)
NJ56_16085	COG0409	Hydrogenase expression formation protein
NJ56_16090	COG0298	carbon dioxide binding
NJ56_16095	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
NJ56_16100	COG0375	protein maturation
NJ56_16110	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJ56_16115	COG0651	ATP synthesis coupled electron transport
NJ56_16120	COG0650	Formate hydrogenlyase subunit 4
NJ56_16125	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
NJ56_16125	COG3261	NADH dehydrogenase
NJ56_16130	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_16135	COG3260	NADH ubiquinone oxidoreductase 20
NJ56_16145	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
NJ56_16150	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJ56_16155	COG3383	formate dehydrogenase (NAD+) activity
NJ56_16160	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
NJ56_16165	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
NJ56_16185	COG0402	S-adenosylhomocysteine deaminase activity
NJ56_16195	COG1228	amidohydrolase
NJ56_16215	COG3724	N-succinylarginine dihydrolase activity
NJ56_16225	COG3138	arginine N-succinyltransferase
NJ56_16230	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
NJ56_16235	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NJ56_16240	COG1271	oxidase subunit
NJ56_16245	COG1294	oxidase, subunit
NJ56_16255	COG3850	Histidine kinase
NJ56_16260	COG2375	cellular response to nickel ion
NJ56_16265	COG0387	Pfam Sodium calcium exchanger
NJ56_16270	COG1702	phosphate starvation-inducible protein PhoH
NJ56_16275	COG4977	sequence-specific DNA binding
NJ56_16315	COG0471	metal ion transport
NJ56_16320	COG3290	protein histidine kinase activity
NJ56_16325	COG4565	transcriptional regulatory protein
NJ56_16330	COG3493	citrate carrier protein
NJ56_16335	COG0840	transmembrane signaling receptor activity
NJ56_16340	COG0339	signal peptide processing
NJ56_16345	COG2723	6-phospho-beta-galactosidase activity
NJ56_16350	COG3916	Acyl-homoserine-lactone synthase
NJ56_16355	COG2771	luxR family
NJ56_16360	COG0538	isocitrate dehydrogenase activity
NJ56_16365	COG1187	pseudouridine synthase activity
NJ56_16375	COG0482	sulfurtransferase activity
NJ56_16385	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
NJ56_16395	COG0745	RESPONSE REGULATOR receiver
NJ56_16400	COG2205	protein histidine kinase activity
NJ56_16405	COG2850	peptidyl-arginine hydroxylation
NJ56_16415	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
NJ56_16425	COG4591	ABC-type transport system involved in lipoprotein release permease component
NJ56_16435	COG4591	ABC-type transport system involved in lipoprotein release permease component
NJ56_16445	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
NJ56_16450	COG3134	Outer membrane lipoprotein
NJ56_16455	COG1252	NADH dehydrogenase
NJ56_16460	COG3150	esterase
NJ56_16470	COG0510	thiamine kinase activity
NJ56_16475	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
NJ56_16480	COG5633	Lipoprotein
NJ56_16485	COG0537	adenosine 5'-monophosphoramidase activity
NJ56_16490	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_16490	COG1263	PTS System
NJ56_16495	COG0084	hydrolase, TatD family'
NJ56_16500	COG0470	DNA polymerase III
NJ56_16505	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
NJ56_16510	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
NJ56_16515	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
NJ56_16520	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NJ56_16525	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NJ56_16530	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_16535	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
NJ56_16540	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NJ56_16550	COG0333	Belongs to the bacterial ribosomal protein bL32 family
NJ56_16555	COG1399	metal-binding, possibly nucleic acid-binding protein
NJ56_16565	COG0564	pseudouridine synthase activity
NJ56_16575	COG1530	ribonuclease E activity
NJ56_16585	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
NJ56_16590	COG0418	dihydroorotase activity
NJ56_16610	COG2197	response regulator
NJ56_16615	COG0628	permease
NJ56_16625	COG1560	Kdo2-lipid A biosynthetic process
NJ56_16635	COG3104	oligopeptide transport
NJ56_16645	COG2943	transferase activity, transferring hexosyl groups
NJ56_16650	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
NJ56_16670	COG0288	reversible hydration of carbon dioxide
NJ56_16680	COG2920	part of a sulfur-relay system
NJ56_16685	COG1254	Belongs to the acylphosphatase family
NJ56_16690	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NJ56_16695	COG3785	DNA binding
NJ56_16700	COG1832	CoA-binding protein
NJ56_16710	COG1803	Methylglyoxal synthase
NJ56_16715	COG0210	DNA helicase
NJ56_16720	COG3304	Inner membrane component domain
NJ56_16725	COG1289	transmembrane transporter activity
NJ56_16730	COG3070	regulator of competence-specific genes
NJ56_16735	COG5404	Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division
NJ56_16740	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
NJ56_16740	COG2885	chlorophyll binding
NJ56_16745	COG3120	sequence-specific DNA binding
NJ56_16750	COG1067	ATP-dependent peptidase activity
NJ56_16755	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NJ56_16760	COG3130	regulation of translation
NJ56_16765	COG3009	Protein conserved in bacteria
NJ56_16770	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NJ56_16770	COG3008	intermembrane lipid transfer
NJ56_16775	COG2995	paraquat-inducible protein a
NJ56_16780	COG0488	(ABC) transporter
NJ56_16785	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NJ56_16785	COG0116	Belongs to the methyltransferase superfamily
NJ56_16790	COG0633	Ferredoxin
NJ56_16790	COG3217	Mosc domain protein beta barrel domain protein
NJ56_16800	COG0167	dihydroorotate dehydrogenase activity
NJ56_16805	COG0308	aminopeptidase N
NJ56_16810	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
NJ56_16825	COG1448	Aminotransferase
NJ56_16830	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NJ56_16835	COG3108	Peptidase M15
NJ56_16840	COG2989	Protein conserved in bacteria
NJ56_16845	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
NJ56_16850	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
NJ56_16855	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
NJ56_16860	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NJ56_16865	COG1434	Gram-negative-bacterium-type cell wall biogenesis
NJ56_16870	COG3173	Aminoglycoside phosphotransferase
NJ56_16875	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
NJ56_16880	COG2835	tetraacyldisaccharide 4'-kinase activity
NJ56_16885	COG1278	Cold shock
NJ56_16890	COG1278	Cold shock
NJ56_16895	COG5383	Protein conserved in bacteria
NJ56_16900	COG1663	tetraacyldisaccharide 4'-kinase activity
NJ56_16910	COG0658	competence protein
NJ56_16910	COG2333	competence protein COMEC
NJ56_16920	COG0539	negative regulation of cytoplasmic translation
NJ56_16930	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
NJ56_16940	COG0252	asparaginase activity
NJ56_16945	COG1944	ATP diphosphatase activity
NJ56_16950	COG2116	formate transmembrane transporter activity
NJ56_16955	COG1882	Formate acetyltransferase
NJ56_16960	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
NJ56_16965	COG2814	Major facilitator Superfamily
NJ56_16970	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
NJ56_16975	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
NJ56_16980	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
NJ56_16985	COG3107	peptidoglycan biosynthetic process
NJ56_16985	COG1674	ftsk spoiiie
NJ56_16990	COG1522	sequence-specific DNA binding
NJ56_16995	COG0492	ferredoxin-NADP+ reductase activity
NJ56_17005	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
NJ56_17015	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
NJ56_17020	COG0542	response to heat
NJ56_17025	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
NJ56_17030	COG1278	Cold shock
NJ56_17040	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJ56_17045	COG2990	Protein conserved in bacteria
NJ56_17050	COG3593	DNA synthesis involved in DNA repair
NJ56_17055	COG2431	L-lysine efflux transmembrane transporter activity
NJ56_17060	COG1151	hydroxylamine reductase activity
NJ56_17065	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NJ56_17070	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
NJ56_17075	COG0702	epimerase
NJ56_17080	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NJ56_17085	COG0393	Putative heavy-metal-binding
NJ56_17095	COG1126	abc transporter atp-binding protein
NJ56_17100	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_17105	COG4215	(ABC) transporter
NJ56_17110	COG4160	amino acid transport
NJ56_17115	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_17130	COG1177	transmembrane transport
NJ56_17135	COG1176	ABC-type spermidine putrescine transport system, permease component I
NJ56_17140	COG3842	ATPase activity
NJ56_17145	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
NJ56_17160	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NJ56_17165	COG2985	domain, Protein
NJ56_17165	COG0569	domain protein
NJ56_17175	COG0671	phosphoesterase, PA-phosphatase related
NJ56_17185	COG1349	DNA-binding transcription factor activity
NJ56_17190	COG0814	amino acid
NJ56_17195	COG1760	l-serine dehydratase
NJ56_17200	COG1686	Belongs to the peptidase S11 family
NJ56_17210	COG0626	cystathionine gamma-synthase activity
NJ56_17225	COG0625	glutathione transferase activity
NJ56_17230	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NJ56_17240	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
NJ56_17245	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NJ56_17250	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
NJ56_17250	COG0131	Imidazoleglycerol-phosphate dehydratase
NJ56_17255	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
NJ56_17260	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
NJ56_17270	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
NJ56_17270	COG0140	phosphoribosyl-ATP diphosphatase activity
NJ56_17275	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
NJ56_17280	COG1210	Utp--glucose-1-phosphate uridylyltransferase
NJ56_17285	COG1210	Utp--glucose-1-phosphate uridylyltransferase
NJ56_17290	COG1253	flavin adenine dinucleotide binding
NJ56_17295	COG3069	C4-dicarboxylate transmembrane transporter activity
NJ56_17300	COG2982	Protein involved in outer membrane biogenesis
NJ56_17305	COG0717	Belongs to the dCTP deaminase family
NJ56_17310	COG0572	uridine kinase
NJ56_17315	COG0489	protein tyrosine kinase activity
NJ56_17320	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NJ56_17320	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NJ56_17330	COG1380	Effector of murein hydrolase LrgA
NJ56_17335	COG1346	cytolysis
NJ56_17345	COG0583	DNA-binding transcription factor activity
NJ56_17355	COG0281	malic enzyme
NJ56_17360	COG2949	membrane
NJ56_17385	COG2311	Membrane
NJ56_17390	COG0302	gtp cyclohydrolase
NJ56_17395	COG0477	Major facilitator Superfamily
NJ56_17400	COG0583	DNA-binding transcription factor activity
NJ56_17420	COG0303	'Molybdopterin
NJ56_17425	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NJ56_17430	COG0488	(ABC) transporter
NJ56_17445	COG2239	Acts as a magnesium transporter
NJ56_17450	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
NJ56_17455	COG5006	permease, DMT superfamily
NJ56_17470	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_17475	COG0765	amino acid transport
NJ56_17480	COG1126	abc transporter atp-binding protein
NJ56_17485	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
NJ56_17490	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
NJ56_17505	COG0697	spore germination
NJ56_17515	COG1982	Orn Lys Arg decarboxylase major
NJ56_17520	COG0531	amino acid
NJ56_17525	COG1174	glycine betaine transport
NJ56_17530	COG1125	glycine betaine transport
NJ56_17535	COG1174	glycine betaine transport
NJ56_17540	COG1732	Glycine betaine
NJ56_17545	COG2897	thiosulfate sulfurtransferase activity
NJ56_17550	COG4807	Protein conserved in bacteria
NJ56_17555	COG3639	organic phosphonate transmembrane transporter activity
NJ56_17565	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
NJ56_17575	COG2261	transglycosylase associated protein
NJ56_17585	COG1403	HNH endonuclease
NJ56_17620	COG3328	transposase activity
NJ56_18060	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NJ56_18065	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair