NJ56_00015 SM00364 Leucine-rich repeats, bacterial type NJ56_00015 SM00365 Leucine-rich repeat, SDS22-like subfamily NJ56_00015 SM00369 Leucine-rich repeats, typical (most populated) subfamily NJ56_00025 SM00487 DEAD-like helicases superfamily NJ56_00025 SM00490 helicase superfamily c-terminal domain NJ56_00040 SM00382 ATPases associated with a variety of cellular activities NJ56_00075 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_00085 SM00382 ATPases associated with a variety of cellular activities NJ56_00110 SM00487 DEAD-like helicases superfamily NJ56_00110 SM00490 helicase superfamily c-terminal domain NJ56_00115 SM00382 ATPases associated with a variety of cellular activities NJ56_00135 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_00135 SM00876 Biotin and Thiamin Synthesis associated domain NJ56_00155 SM00382 ATPases associated with a variety of cellular activities NJ56_00210 SM00855 Phosphoglycerate mutase family NJ56_00220 SM00421 helix_turn_helix, Lux Regulon NJ56_00220 SM00448 cheY-homologous receiver domain NJ56_00225 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_00225 SM00387 Histidine kinase-like ATPases NJ56_00225 SM00388 His Kinase A (phosphoacceptor) domain NJ56_00225 SM00448 cheY-homologous receiver domain NJ56_00330 SM00881 CoA binding domain NJ56_00345 SM00861 Transketolase, pyrimidine binding domain NJ56_00400 SM00797 Allophanate hydrolase subunit 2 NJ56_00405 SM00796 Allophanate hydrolase subunit 1 NJ56_00455 SM00387 Histidine kinase-like ATPases NJ56_00455 SM00388 His Kinase A (phosphoacceptor) domain NJ56_00460 SM00448 cheY-homologous receiver domain NJ56_00460 SM00862 Transcriptional regulatory protein, C terminal NJ56_00490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_00505 SM01081 Putative carbohydrate binding domain NJ56_00590 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_00605 SM00116 Domain in cystathionine beta-synthase and other proteins. NJ56_00605 SM01091 Transporter associated domain NJ56_00620 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_00635 SM00382 ATPases associated with a variety of cellular activities NJ56_00690 SM00936 Penicillin-binding protein 5, C-terminal domain NJ56_00705 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_00715 SM00267 diguanylate cyclase NJ56_00730 SM00357 Cold shock protein domain NJ56_00740 SM00421 helix_turn_helix, Lux Regulon NJ56_00770 SM00267 diguanylate cyclase NJ56_00770 SM00448 cheY-homologous receiver domain NJ56_00775 SM00073 Histidine Phosphotransfer domain NJ56_00775 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NJ56_00775 SM00091 PAS domain NJ56_00775 SM00387 Histidine kinase-like ATPases NJ56_00775 SM00388 His Kinase A (phosphoacceptor) domain NJ56_00775 SM00448 cheY-homologous receiver domain NJ56_00775 SM01079 NJ56_00775 NJ56_00820 SM00331 Sigma factor PP2C-like phosphatases NJ56_00820 SM00448 cheY-homologous receiver domain NJ56_00860 SM01236 NJ56_00860 NJ56_00885 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NJ56_00990 SM00862 Transcriptional regulatory protein, C terminal NJ56_00995 SM00840 NJ56_00995 NJ56_01010 SM01001 AIR carboxylase NJ56_01025 SM00382 ATPases associated with a variety of cellular activities NJ56_01035 SM00822 NJ56_01035 NJ56_01045 SM00244 prohibitin homologues NJ56_01055 SM00422 helix_turn_helix, mercury resistance NJ56_01175 SM00387 Histidine kinase-like ATPases NJ56_01180 SM00493 NJ56_01180 NJ56_01190 SM00382 ATPases associated with a variety of cellular activities NJ56_01195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_01195 SM00387 Histidine kinase-like ATPases NJ56_01195 SM00388 His Kinase A (phosphoacceptor) domain NJ56_01200 SM00448 cheY-homologous receiver domain NJ56_01200 SM00862 Transcriptional regulatory protein, C terminal NJ56_01310 SM00938 Nitrogen regulatory protein P-II NJ56_01315 SM00382 ATPases associated with a variety of cellular activities NJ56_01320 SM00382 ATPases associated with a variety of cellular activities NJ56_01325 SM00344 helix_turn_helix ASNC type NJ56_01365 SM00411 bacterial (prokaryotic) histone like domain NJ56_01370 SM00382 ATPases associated with a variety of cellular activities NJ56_01370 SM00464 Found in ATP-dependent protease La (LON) NJ56_01375 SM00382 ATPases associated with a variety of cellular activities NJ56_01375 SM00994 ClpX C4-type zinc finger NJ56_01375 SM01086 C-terminal, D2-small domain, of ClpB protein NJ56_01470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_01470 SM00387 Histidine kinase-like ATPases NJ56_01470 SM00388 His Kinase A (phosphoacceptor) domain NJ56_01475 SM00448 cheY-homologous receiver domain NJ56_01480 SM00981 NJ56_01480 NJ56_01495 SM00861 Transketolase, pyrimidine binding domain NJ56_01540 SM01323 NJ56_01540 NJ56_01570 SM00642 Alpha-amylase domain NJ56_01590 SM00091 PAS domain NJ56_01590 SM00387 Histidine kinase-like ATPases NJ56_01590 SM00388 His Kinase A (phosphoacceptor) domain NJ56_01595 SM00448 cheY-homologous receiver domain NJ56_01595 SM00862 Transcriptional regulatory protein, C terminal NJ56_01640 SM00346 helix_turn_helix isocitrate lyase regulation NJ56_01685 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase NJ56_01745 SM00900 NJ56_01745 NJ56_01785 SM00479 NJ56_01785 NJ56_01800 SM00849 Metallo-beta-lactamase superfamily NJ56_01805 SM00257 Lysin motif NJ56_01845 SM00382 ATPases associated with a variety of cellular activities NJ56_01845 SM01086 C-terminal, D2-small domain, of ClpB protein NJ56_01855 SM00363 S4 RNA-binding domain NJ56_01875 SM00830 Chorismate mutase type II NJ56_01880 SM00830 Chorismate mutase type II NJ56_01890 SM00448 cheY-homologous receiver domain NJ56_01890 SM00850 LytTr DNA-binding domain NJ56_01925 SM00382 ATPases associated with a variety of cellular activities NJ56_01925 SM00962 SRP54-type protein, GTPase domain NJ56_01925 SM00963 SRP54-type protein, helical bundle domain NJ56_01935 SM01091 Transporter associated domain NJ56_01985 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain NJ56_01995 SM00382 ATPases associated with a variety of cellular activities NJ56_02030 SM00862 Transcriptional regulatory protein, C terminal NJ56_02045 SM00382 ATPases associated with a variety of cellular activities NJ56_02100 SM00495 Chitin-binding domain type 3 NJ56_02110 SM00194 Protein tyrosine phosphatase, catalytic domain NJ56_02110 SM00404 Protein tyrosine phosphatase, catalytic domain motif NJ56_02185 SM00382 ATPases associated with a variety of cellular activities NJ56_02210 SM00342 helix_turn_helix, arabinose operon control protein NJ56_02265 SM00421 helix_turn_helix, Lux Regulon NJ56_02265 SM00448 cheY-homologous receiver domain NJ56_02270 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_02270 SM00387 Histidine kinase-like ATPases NJ56_02270 SM00448 cheY-homologous receiver domain NJ56_02280 SM00533 DNA-binding domain of DNA mismatch repair MUTS family NJ56_02280 SM00534 ATPase domain of DNA mismatch repair MUTS family NJ56_02290 SM00257 Lysin motif NJ56_02390 SM01192 NJ56_02390 NJ56_02390 SM01193 NJ56_02390 NJ56_02405 SM00954 Region found in RelA / SpoT proteins NJ56_02415 SM00073 Histidine Phosphotransfer domain NJ56_02415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_02415 SM00387 Histidine kinase-like ATPases NJ56_02415 SM00388 His Kinase A (phosphoacceptor) domain NJ56_02415 SM00448 cheY-homologous receiver domain NJ56_02420 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NJ56_02425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_02465 SM00487 DEAD-like helicases superfamily NJ56_02465 SM00490 helicase superfamily c-terminal domain NJ56_02465 SM00847 Helicase associated domain (HA2) Add an annotation NJ56_02530 SM00382 ATPases associated with a variety of cellular activities NJ56_02535 SM00947 Carbonic anhydrase NJ56_02600 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_02600 SM00895 NJ56_02600 NJ56_02620 SM00644 NJ56_02620 NJ56_02645 SM01240 NJ56_02645 NJ56_02670 SM00957 SecA DEAD-like domain NJ56_02670 SM00958 SecA preprotein cross-linking domain NJ56_02690 SM00864 Tubulin/FtsZ family, GTPase domain NJ56_02690 SM00865 Tubulin/FtsZ family, C-terminal domain NJ56_02695 SM00842 Cell division protein FtsA NJ56_02775 SM01321 NJ56_02775 NJ56_02780 SM00354 helix_turn _helix lactose operon repressor NJ56_02805 SM00917 LeuA allosteric (dimerisation) domain NJ56_02810 SM01329 NJ56_02810 NJ56_02850 SM00382 ATPases associated with a variety of cellular activities NJ56_02860 SM00486 DNA polymerase type-B family NJ56_02865 SM00487 DEAD-like helicases superfamily NJ56_02865 SM00490 helicase superfamily c-terminal domain NJ56_02875 SM00271 DnaJ molecular chaperone homology domain NJ56_02895 SM00650 Ribosomal RNA adenine dimethylases NJ56_02935 SM00851 MGS-like domain NJ56_02935 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NJ56_02940 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain NJ56_02970 SM00904 Riboflavin kinase NJ56_02995 SM00271 DnaJ molecular chaperone homology domain NJ56_03020 SM00852 Probable molybdopterin binding domain NJ56_03055 SM00448 cheY-homologous receiver domain NJ56_03055 SM00862 Transcriptional regulatory protein, C terminal NJ56_03065 SM00342 helix_turn_helix, arabinose operon control protein NJ56_03065 SM00871 Bacterial transcription activator, effector binding domain NJ56_03070 SM00855 Phosphoglycerate mutase family NJ56_03090 SM00831 Cation transporter/ATPase, N-terminus NJ56_03105 SM00382 ATPases associated with a variety of cellular activities NJ56_03110 SM00530 Helix-turn-helix XRE-family like proteins NJ56_03115 SM00382 ATPases associated with a variety of cellular activities NJ56_03140 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain NJ56_03145 SM01133 NJ56_03145 NJ56_03170 SM00749 bacterial OsmY and nodulation domain NJ56_03215 SM00267 diguanylate cyclase NJ56_03220 SM00091 PAS domain NJ56_03230 SM01120 NJ56_03230 NJ56_03350 SM00420 helix_turn_helix, Deoxyribose operon repressor NJ56_03350 SM01134 NJ56_03350 NJ56_03365 SM00869 Autotransporter beta-domain NJ56_03440 SM00506 Appr-1"-p processing enzyme NJ56_03495 SM00382 ATPases associated with a variety of cellular activities NJ56_03665 SM00382 ATPases associated with a variety of cellular activities NJ56_03670 SM00382 ATPases associated with a variety of cellular activities NJ56_03680 SM00072 Guanylate kinase homologues. NJ56_03690 SM00859 Semialdehyde dehydrogenase, NAD binding domain NJ56_03750 SM00487 DEAD-like helicases superfamily NJ56_03750 SM00490 helicase superfamily c-terminal domain NJ56_03760 SM00028 Tetratricopeptide repeats NJ56_03765 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_03765 SM00322 K homology RNA-binding domain NJ56_03770 SM01387 NJ56_03770 NJ56_03790 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_03790 SM00322 K homology RNA-binding domain NJ56_03825 SM00382 ATPases associated with a variety of cellular activities NJ56_03835 SM01103 NJ56_03835 NJ56_03850 SM00448 cheY-homologous receiver domain NJ56_03850 SM00862 Transcriptional regulatory protein, C terminal NJ56_03855 SM00387 Histidine kinase-like ATPases NJ56_03855 SM00388 His Kinase A (phosphoacceptor) domain NJ56_03945 SM00116 Domain in cystathionine beta-synthase and other proteins. NJ56_03945 SM01091 Transporter associated domain NJ56_04060 SM00967 RNA 2'-O ribose methyltransferase substrate binding NJ56_04065 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_04065 SM00357 Cold shock protein domain NJ56_04065 SM00955 NJ56_04065 NJ56_04075 SM00788 Adenylosuccinate synthetase NJ56_04085 SM00244 prohibitin homologues NJ56_04090 SM00244 prohibitin homologues NJ56_04110 SM00853 MutL C terminal dimerisation domain NJ56_04110 SM01340 NJ56_04110 NJ56_04115 SM00257 Lysin motif NJ56_04115 SM00646 NJ56_04115 NJ56_04150 SM00479 NJ56_04150 NJ56_04225 SM00421 helix_turn_helix, Lux Regulon NJ56_04235 SM00841 Elongation factor P, C-terminal NJ56_04235 SM01185 NJ56_04235 NJ56_04255 SM00883 Chaperonin 10 Kd subunit NJ56_04325 SM00450 Rhodanese Homology Domain NJ56_04360 SM00857 Resolvase, N terminal domain NJ56_04465 SM00382 ATPases associated with a variety of cellular activities NJ56_04580 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NJ56_04580 SM00437 Bacterial DNA topoisomerase I DNA-binding domain NJ56_04580 SM00493 NJ56_04580 NJ56_04675 SM00798 AICARFT/IMPCHase bienzyme NJ56_04675 SM00851 MGS-like domain NJ56_04680 SM01209 NJ56_04680 NJ56_04680 SM01210 NJ56_04680 NJ56_04690 SM00411 bacterial (prokaryotic) histone like domain NJ56_04745 SM00876 Biotin and Thiamin Synthesis associated domain NJ56_04750 SM00663 RNA polymerase I subunit A N-terminus NJ56_04780 SM00649 Ribosomal protein L11/L12 NJ56_04785 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. NJ56_04785 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. NJ56_04895 SM01060 NJ56_04895 NJ56_04900 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. NJ56_04905 SM01004 Delta-aminolevulinic acid dehydratase NJ56_05000 SM00382 ATPases associated with a variety of cellular activities NJ56_05050 SM00382 ATPases associated with a variety of cellular activities NJ56_05055 SM00382 ATPases associated with a variety of cellular activities NJ56_05105 SM00382 ATPases associated with a variety of cellular activities NJ56_05110 SM00382 ATPases associated with a variety of cellular activities NJ56_05110 SM00962 SRP54-type protein, GTPase domain NJ56_05110 SM00963 SRP54-type protein, helical bundle domain NJ56_05205 SM00341 Helicase and RNase D C-terminal NJ56_05205 SM00487 DEAD-like helicases superfamily NJ56_05205 SM00490 helicase superfamily c-terminal domain NJ56_05205 SM00956 NJ56_05205 NJ56_05280 SM01219 NJ56_05280 NJ56_05380 SM00984 UDP binding domain NJ56_05400 SM00357 Cold shock protein domain NJ56_05400 SM00382 ATPases associated with a variety of cellular activities NJ56_05400 SM00959 Rho termination factor, N-terminal domain NJ56_05410 SM00487 DEAD-like helicases superfamily NJ56_05410 SM00490 helicase superfamily c-terminal domain NJ56_05440 SM00495 Chitin-binding domain type 3 NJ56_05440 SM01276 NJ56_05440 NJ56_05480 SM00382 ATPases associated with a variety of cellular activities NJ56_05600 SM00382 ATPases associated with a variety of cellular activities NJ56_05630 SM00859 Semialdehyde dehydrogenase, NAD binding domain NJ56_05690 SM00487 DEAD-like helicases superfamily NJ56_05690 SM00490 helicase superfamily c-terminal domain NJ56_05695 SM00354 helix_turn _helix lactose operon repressor NJ56_05710 SM00382 ATPases associated with a variety of cellular activities NJ56_05710 SM01086 C-terminal, D2-small domain, of ClpB protein NJ56_05795 SM00448 cheY-homologous receiver domain NJ56_05795 SM00862 Transcriptional regulatory protein, C terminal NJ56_05800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_05800 SM00387 Histidine kinase-like ATPases NJ56_05800 SM00388 His Kinase A (phosphoacceptor) domain NJ56_05810 SM00971 Serine acetyltransferase, N-terminal NJ56_05830 SM00450 Rhodanese Homology Domain NJ56_05850 SM00829 Enoylreductase NJ56_05890 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain NJ56_05890 SM01232 NJ56_05890 NJ56_05955 SM00052 Putative diguanylate phosphodiesterase NJ56_05955 SM00091 PAS domain NJ56_05955 SM00267 diguanylate cyclase NJ56_05985 SM00532 Ligase N family NJ56_05990 SM00072 Guanylate kinase homologues. NJ56_05995 SM01409 NJ56_05995 NJ56_06000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_06000 SM00954 Region found in RelA / SpoT proteins NJ56_06010 SM00487 DEAD-like helicases superfamily NJ56_06010 SM00490 helicase superfamily c-terminal domain NJ56_06055 SM01230 NJ56_06055 NJ56_06065 SM00091 PAS domain NJ56_06065 SM00387 Histidine kinase-like ATPases NJ56_06065 SM00388 His Kinase A (phosphoacceptor) domain NJ56_06070 SM00382 ATPases associated with a variety of cellular activities NJ56_06070 SM00448 cheY-homologous receiver domain NJ56_06075 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_06095 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs NJ56_06095 SM00474 3'-5' exonuclease NJ56_06095 SM00475 5'-3' exonuclease NJ56_06095 SM00482 DNA polymerase A domain NJ56_06145 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_06145 SM00895 NJ56_06145 NJ56_06150 SM00354 helix_turn _helix lactose operon repressor NJ56_06170 SM00382 ATPases associated with a variety of cellular activities NJ56_06185 SM00382 ATPases associated with a variety of cellular activities NJ56_06190 SM00327 von Willebrand factor (vWF) type A domain NJ56_06205 SM00344 helix_turn_helix ASNC type NJ56_06220 SM01228 NJ56_06220 NJ56_06270 SM00382 ATPases associated with a variety of cellular activities NJ56_06305 SM00382 ATPases associated with a variety of cellular activities NJ56_06315 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_06335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_06335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_06370 SM01234 NJ56_06370 NJ56_06390 SM00382 ATPases associated with a variety of cellular activities NJ56_06390 SM00760 Bacterial dnaA protein helix-turn-helix domain NJ56_06395 SM00480 DNA polymerase III beta subunit NJ56_06405 SM00387 Histidine kinase-like ATPases NJ56_06405 SM00433 TopoisomeraseII NJ56_06505 SM00972 Spore Coat Protein U domain NJ56_06540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_06540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_06540 SM01358 NJ56_06540 NJ56_06555 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NJ56_06655 SM00421 helix_turn_helix, Lux Regulon NJ56_06655 SM00448 cheY-homologous receiver domain NJ56_06660 SM00387 Histidine kinase-like ATPases NJ56_06690 SM00382 ATPases associated with a variety of cellular activities NJ56_06695 SM00382 ATPases associated with a variety of cellular activities NJ56_06740 SM00028 Tetratricopeptide repeats NJ56_06745 SM00052 Putative diguanylate phosphodiesterase NJ56_06745 SM00267 diguanylate cyclase NJ56_06770 SM00052 Putative diguanylate phosphodiesterase NJ56_06820 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NJ56_06860 SM00354 helix_turn _helix lactose operon repressor NJ56_06895 SM00859 Semialdehyde dehydrogenase, NAD binding domain NJ56_06905 SM00642 Alpha-amylase domain NJ56_06910 SM00642 Alpha-amylase domain NJ56_06935 SM00420 helix_turn_helix, Deoxyribose operon repressor NJ56_06935 SM01134 NJ56_06935 NJ56_06945 SM00450 Rhodanese Homology Domain NJ56_06950 SM00421 helix_turn_helix, Lux Regulon NJ56_06995 SM00899 NJ56_06995 NJ56_07000 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_07000 SM00732 Likely ribonuclease with RNase H fold. NJ56_07030 SM00448 cheY-homologous receiver domain NJ56_07030 SM00862 Transcriptional regulatory protein, C terminal NJ56_07035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_07035 SM00387 Histidine kinase-like ATPases NJ56_07035 SM00388 His Kinase A (phosphoacceptor) domain NJ56_07050 SM00363 S4 RNA-binding domain NJ56_07095 SM00965 Secretin and TonB N terminus short domain NJ56_07175 SM00354 helix_turn _helix lactose operon repressor NJ56_07205 SM00100 Cyclic nucleotide-monophosphate binding domain NJ56_07205 SM00419 helix_turn_helix, cAMP Regulatory protein NJ56_07270 SM00382 ATPases associated with a variety of cellular activities NJ56_07335 SM00838 Elongation factor G C-terminus NJ56_07335 SM00889 Elongation factor G, domain IV NJ56_07360 SM01403 NJ56_07360 NJ56_07380 SM01382 NJ56_07380 NJ56_07380 SM01383 NJ56_07380 NJ56_07395 SM00322 K homology RNA-binding domain NJ56_07415 SM01374 NJ56_07415 NJ56_07420 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. NJ56_07485 SM00363 S4 RNA-binding domain NJ56_07485 SM01390 NJ56_07485 NJ56_07490 SM00662 RNA polymerases D NJ56_07500 SM00422 helix_turn_helix, mercury resistance NJ56_07620 SM00346 helix_turn_helix isocitrate lyase regulation NJ56_07625 SM01018 B12 binding domain NJ56_07725 SM00382 ATPases associated with a variety of cellular activities NJ56_07745 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins NJ56_07745 SM00634 Bacterial Ig-like domain (group 1) NJ56_07760 SM00912 haemagglutination activity domain NJ56_07805 SM00382 ATPases associated with a variety of cellular activities NJ56_07830 SM00563 Phosphate acyltransferases NJ56_07860 SM00829 Enoylreductase NJ56_07865 SM00382 ATPases associated with a variety of cellular activities NJ56_07870 SM01005 Alanine racemase, C-terminal domain NJ56_07925 SM00947 Carbonic anhydrase NJ56_07965 SM00878 Biotin carboxylase C-terminal domain NJ56_07990 SM00829 Enoylreductase NJ56_07995 SM00052 Putative diguanylate phosphodiesterase NJ56_07995 SM00267 diguanylate cyclase NJ56_08020 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_08105 SM00831 Cation transporter/ATPase, N-terminus NJ56_08110 SM00354 helix_turn _helix lactose operon repressor NJ56_08120 SM00642 Alpha-amylase domain NJ56_08165 SM00382 ATPases associated with a variety of cellular activities NJ56_08195 SM00382 ATPases associated with a variety of cellular activities NJ56_08230 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NJ56_08235 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NJ56_08290 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_08295 SM00073 Histidine Phosphotransfer domain NJ56_08295 SM00091 PAS domain NJ56_08295 SM00387 Histidine kinase-like ATPases NJ56_08295 SM00388 His Kinase A (phosphoacceptor) domain NJ56_08295 SM00448 cheY-homologous receiver domain NJ56_08315 SM00749 bacterial OsmY and nodulation domain NJ56_08395 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_08395 SM00895 NJ56_08395 NJ56_08415 SM00858 NJ56_08415 NJ56_08445 SM00869 Autotransporter beta-domain NJ56_08480 SM00530 Helix-turn-helix XRE-family like proteins NJ56_08485 SM00400 zinc finger NJ56_08515 SM00530 Helix-turn-helix XRE-family like proteins NJ56_08520 SM00400 zinc finger NJ56_08525 SM00530 Helix-turn-helix XRE-family like proteins NJ56_08530 SM00400 zinc finger NJ56_08565 SM00860 SMI1 / KNR4 family NJ56_08635 SM00400 zinc finger NJ56_08635 SM00493 NJ56_08635 NJ56_08635 SM00766 DNA primase DnaG DnaB-binding NJ56_08650 SM01207 NJ56_08650 NJ56_08655 SM00905 Dihydroneopterin aldolase NJ56_08665 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_08670 SM00287 Bacterial SH3 domain homologues NJ56_08675 SM01118 NJ56_08675 NJ56_08745 SM00387 Histidine kinase-like ATPases NJ56_08745 SM00433 TopoisomeraseII NJ56_08765 SM00434 DNA Topoisomerase IV NJ56_08770 SM00563 Phosphate acyltransferases NJ56_08780 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_08795 SM00342 helix_turn_helix, arabinose operon control protein NJ56_08905 SM00923 MbtH-like protein NJ56_08910 SM00823 Phosphopantetheine attachment site NJ56_08910 SM00824 Thioesterase NJ56_08920 SM00382 ATPases associated with a variety of cellular activities NJ56_08995 SM00116 Domain in cystathionine beta-synthase and other proteins. NJ56_09000 SM00420 helix_turn_helix, Deoxyribose operon repressor NJ56_09000 SM01134 NJ56_09000 NJ56_09060 SM00478 endonuclease III NJ56_09060 SM00525 NJ56_09060 NJ56_09085 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_09095 SM01152 NJ56_09095 NJ56_09130 SM00732 Likely ribonuclease with RNase H fold. NJ56_09155 SM00731 SprT homologues. NJ56_09160 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NJ56_09190 SM00861 Transketolase, pyrimidine binding domain NJ56_09195 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NJ56_09260 SM01011 Aminopeptidase P, N-terminal domain NJ56_09355 SM00382 ATPases associated with a variety of cellular activities NJ56_09385 SM00382 ATPases associated with a variety of cellular activities NJ56_09430 SM00862 Transcriptional regulatory protein, C terminal NJ56_09445 SM00849 Metallo-beta-lactamase superfamily NJ56_09465 SM00354 helix_turn _helix lactose operon repressor NJ56_09470 SM00563 Phosphate acyltransferases NJ56_09490 SM00927 DNA mismatch repair enzyme MutH NJ56_09505 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NJ56_09570 SM00646 NJ56_09570 NJ56_09590 SM00925 MltA specific insert domain NJ56_09630 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs NJ56_09630 SM00475 5'-3' exonuclease NJ56_09675 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_09720 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NJ56_09730 SM00935 Outer membrane protein (OmpH-like) NJ56_09760 SM00481 DNA polymerase alpha chain like domain NJ56_09790 SM00977 TilS substrate C-terminal domain NJ56_09810 SM01322 NJ56_09810 NJ56_09850 SM00382 ATPases associated with a variety of cellular activities NJ56_09850 SM00930 NJ56_09850 NJ56_09885 SM00155 Phospholipase D. Active site motifs. NJ56_09890 SM00881 CoA binding domain NJ56_09895 SM01144 NJ56_09895 NJ56_09905 SM00967 RNA 2'-O ribose methyltransferase substrate binding NJ56_09925 SM00347 helix_turn_helix multiple antibiotic resistance protein NJ56_09950 SM00382 ATPases associated with a variety of cellular activities NJ56_09995 SM00357 Cold shock protein domain NJ56_10030 SM00382 ATPases associated with a variety of cellular activities NJ56_10200 SM00778 Zinc-binding domain of primase-helicase NJ56_10200 SM00885 D5 N terminal like NJ56_10295 SM00986 Uracil DNA glycosylase superfamily NJ56_10295 SM00987 UreE urease accessory protein, C-terminal domain NJ56_10310 SM00248 ankyrin repeats NJ56_10315 SM00487 DEAD-like helicases superfamily NJ56_10315 SM00490 helicase superfamily c-terminal domain NJ56_10360 SM00358 Double-stranded RNA binding motif NJ56_10360 SM00535 Ribonuclease III family NJ56_10415 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_10420 SM01211 NJ56_10420 NJ56_10435 SM00387 Histidine kinase-like ATPases NJ56_10435 SM00388 His Kinase A (phosphoacceptor) domain NJ56_10445 SM00382 ATPases associated with a variety of cellular activities NJ56_10445 SM00448 cheY-homologous receiver domain NJ56_10455 SM00938 Nitrogen regulatory protein P-II NJ56_10550 SM00271 DnaJ molecular chaperone homology domain NJ56_10580 SM01359 NJ56_10580 NJ56_10580 SM01360 NJ56_10580 NJ56_10595 SM00562 NJ56_10595 NJ56_10605 SM00028 Tetratricopeptide repeats NJ56_10610 SM00530 Helix-turn-helix XRE-family like proteins NJ56_10630 SM00564 beta-propeller repeat NJ56_10650 SM00116 Domain in cystathionine beta-synthase and other proteins. NJ56_10650 SM01240 NJ56_10650 NJ56_10660 SM00247 Beta/gamma crystallins NJ56_10710 SM00046 Diacylglycerol kinase catalytic domain (presumed) NJ56_10725 SM00448 cheY-homologous receiver domain NJ56_10725 SM00862 Transcriptional regulatory protein, C terminal NJ56_10730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_10730 SM00387 Histidine kinase-like ATPases NJ56_10730 SM00388 His Kinase A (phosphoacceptor) domain NJ56_10790 SM00924 MgtE intracellular N domain NJ56_10820 SM00382 ATPases associated with a variety of cellular activities NJ56_10890 SM01130 NJ56_10890 NJ56_10940 SM00830 Chorismate mutase type II NJ56_10960 SM00421 helix_turn_helix, Lux Regulon NJ56_10960 SM00448 cheY-homologous receiver domain NJ56_10980 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NJ56_11000 SM00919 Malic enzyme, NAD binding domain NJ56_11000 SM01274 NJ56_11000 NJ56_11085 SM01130 NJ56_11085 NJ56_11130 SM00382 ATPases associated with a variety of cellular activities NJ56_11165 SM00771 ZipA, C-terminal domain (FtsZ-binding) NJ56_11170 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NJ56_11170 SM00292 breast cancer carboxy-terminal domain NJ56_11170 SM00532 Ligase N family NJ56_11275 SM00448 cheY-homologous receiver domain NJ56_11275 SM00850 LytTr DNA-binding domain NJ56_11280 SM00387 Histidine kinase-like ATPases NJ56_11330 SM00382 ATPases associated with a variety of cellular activities NJ56_11410 SM00463 Small MutS-related domain NJ56_11450 SM00825 Beta-ketoacyl synthase NJ56_11485 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_11500 SM00342 helix_turn_helix, arabinose operon control protein NJ56_11510 SM00859 Semialdehyde dehydrogenase, NAD binding domain NJ56_11555 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_11570 SM00382 ATPases associated with a variety of cellular activities NJ56_11585 SM00052 Putative diguanylate phosphodiesterase NJ56_11615 SM00354 helix_turn _helix lactose operon repressor NJ56_11650 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_11690 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NJ56_11695 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NJ56_11695 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NJ56_11765 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain NJ56_11775 SM01060 NJ56_11775 NJ56_11805 SM00852 Probable molybdopterin binding domain NJ56_11840 SM00434 DNA Topoisomerase IV NJ56_11845 SM00387 Histidine kinase-like ATPases NJ56_11845 SM00388 His Kinase A (phosphoacceptor) domain NJ56_11845 SM00448 cheY-homologous receiver domain NJ56_11850 SM00421 helix_turn_helix, Lux Regulon NJ56_11850 SM00448 cheY-homologous receiver domain NJ56_11855 SM00387 Histidine kinase-like ATPases NJ56_11855 SM00388 His Kinase A (phosphoacceptor) domain NJ56_11955 SM00530 Helix-turn-helix XRE-family like proteins NJ56_12000 SM01252 NJ56_12000 NJ56_12005 SM00507 HNH nucleases NJ56_12055 SM00507 HNH nucleases NJ56_12210 SM00487 DEAD-like helicases superfamily NJ56_12210 SM00490 helicase superfamily c-terminal domain NJ56_12215 SM00363 S4 RNA-binding domain NJ56_12230 SM00382 ATPases associated with a variety of cellular activities NJ56_12250 SM00052 Putative diguanylate phosphodiesterase NJ56_12260 SM00014 Acid phosphatase homologues NJ56_12265 SM00833 Cobalamin synthesis protein cobW C-terminal domain NJ56_12295 SM00841 Elongation factor P, C-terminal NJ56_12295 SM01185 NJ56_12295 NJ56_12340 SM00518 AP endonuclease family 2 NJ56_12380 SM00382 ATPases associated with a variety of cellular activities NJ56_12400 SM00479 NJ56_12400 NJ56_12570 SM00974 NJ56_12570 NJ56_12580 SM00530 Helix-turn-helix XRE-family like proteins NJ56_12585 SM00530 Helix-turn-helix XRE-family like proteins NJ56_12600 SM00100 Cyclic nucleotide-monophosphate binding domain NJ56_12600 SM00419 helix_turn_helix, cAMP Regulatory protein NJ56_12605 SM00382 ATPases associated with a variety of cellular activities NJ56_12625 SM00387 Histidine kinase-like ATPases NJ56_12630 SM00421 helix_turn_helix, Lux Regulon NJ56_12630 SM00448 cheY-homologous receiver domain NJ56_12635 SM00448 cheY-homologous receiver domain NJ56_12640 SM00091 PAS domain NJ56_12640 SM00387 Histidine kinase-like ATPases NJ56_12645 SM00764 Citrate lyase ligase C-terminal domain NJ56_12720 SM00829 Enoylreductase NJ56_12725 SM01038 Beta galactosidase small chain NJ56_12730 SM00354 helix_turn _helix lactose operon repressor NJ56_12740 SM00357 Cold shock protein domain NJ56_12750 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_12750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_12795 SM00073 Histidine Phosphotransfer domain NJ56_12795 SM00260 Two component signalling adaptor domain NJ56_12795 SM00387 Histidine kinase-like ATPases NJ56_12795 SM01231 NJ56_12795 NJ56_12800 SM00260 Two component signalling adaptor domain NJ56_12805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_12805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_12805 SM00319 Homologues of the ligand binding domain of Tar NJ56_12810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_12810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_12810 SM00319 Homologues of the ligand binding domain of Tar NJ56_12815 SM00138 Methyltransferase, chemotaxis proteins NJ56_12820 SM00448 cheY-homologous receiver domain NJ56_12825 SM00448 cheY-homologous receiver domain NJ56_12840 SM00862 Transcriptional regulatory protein, C terminal NJ56_12845 SM00862 Transcriptional regulatory protein, C terminal NJ56_12895 SM00421 helix_turn_helix, Lux Regulon NJ56_12930 SM00858 NJ56_12930 NJ56_12975 SM00047 Lysozyme subfamily 2 NJ56_13040 SM00382 ATPases associated with a variety of cellular activities NJ56_13070 SM00477 DNA/RNA non-specific endonuclease NJ56_13070 SM00892 DNA/RNA non-specific endonuclease NJ56_13080 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_13085 SM00342 helix_turn_helix, arabinose operon control protein NJ56_13135 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_13135 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NJ56_13145 SM00382 ATPases associated with a variety of cellular activities NJ56_13160 SM00862 Transcriptional regulatory protein, C terminal NJ56_13200 SM00421 helix_turn_helix, Lux Regulon NJ56_13200 SM00448 cheY-homologous receiver domain NJ56_13205 SM00465 GIY-YIG type nucleases (URI domain) NJ56_13520 SM00530 Helix-turn-helix XRE-family like proteins NJ56_13525 SM00974 NJ56_13525 NJ56_13545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_13545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_13555 SM00382 ATPases associated with a variety of cellular activities NJ56_13675 SM00363 S4 RNA-binding domain NJ56_13705 SM00342 helix_turn_helix, arabinose operon control protein NJ56_13735 SM00357 Cold shock protein domain NJ56_13740 SM00357 Cold shock protein domain NJ56_13745 SM00357 Cold shock protein domain NJ56_13785 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NJ56_13785 SM00091 PAS domain NJ56_13785 SM00267 diguanylate cyclase NJ56_13790 SM00090 RIO-like kinase NJ56_13795 SM00382 ATPases associated with a variety of cellular activities NJ56_13805 SM00342 helix_turn_helix, arabinose operon control protein NJ56_13855 SM00357 Cold shock protein domain NJ56_13885 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NJ56_13885 SM00450 Rhodanese Homology Domain NJ56_13955 SM01091 Transporter associated domain NJ56_13985 SM00487 DEAD-like helicases superfamily NJ56_13985 SM00490 helicase superfamily c-terminal domain NJ56_13995 SM01022 NJ56_13995 NJ56_14010 SM00479 NJ56_14010 NJ56_14095 SM01022 NJ56_14095 NJ56_14105 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NJ56_14105 SM00091 PAS domain NJ56_14105 SM00267 diguanylate cyclase NJ56_14120 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NJ56_14125 SM00945 ProQ/FINO family NJ56_14130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NJ56_14130 SM00245 tail specific protease NJ56_14150 SM00346 helix_turn_helix isocitrate lyase regulation NJ56_14155 SM00644 NJ56_14155 NJ56_14195 SM00382 ATPases associated with a variety of cellular activities NJ56_14245 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain NJ56_14270 SM00873 B3/4 domain NJ56_14270 SM00874 tRNA synthetase B5 domain NJ56_14270 SM00896 Ferredoxin-fold anticodon binding domain NJ56_14275 SM00411 bacterial (prokaryotic) histone like domain NJ56_14325 SM00382 ATPases associated with a variety of cellular activities NJ56_14380 SM00382 ATPases associated with a variety of cellular activities NJ56_14455 SM00382 ATPases associated with a variety of cellular activities NJ56_14530 SM00354 helix_turn _helix lactose operon repressor NJ56_14555 SM00479 NJ56_14555 NJ56_14595 SM00347 helix_turn_helix multiple antibiotic resistance protein NJ56_14615 SM00363 S4 RNA-binding domain NJ56_14650 SM00271 DnaJ molecular chaperone homology domain NJ56_14670 SM00382 ATPases associated with a variety of cellular activities NJ56_14675 SM00382 ATPases associated with a variety of cellular activities NJ56_14710 SM00382 ATPases associated with a variety of cellular activities NJ56_14745 SM00953 NJ56_14745 NJ56_14755 SM00091 PAS domain NJ56_14755 SM00382 ATPases associated with a variety of cellular activities NJ56_14765 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain NJ56_14790 SM00890 Domain of unknown function NJ56_14825 SM00871 Bacterial transcription activator, effector binding domain NJ56_14850 SM00382 ATPases associated with a variety of cellular activities NJ56_14850 SM00487 DEAD-like helicases superfamily NJ56_14850 SM00490 helicase superfamily c-terminal domain NJ56_14850 SM00847 Helicase associated domain (HA2) Add an annotation NJ56_14855 SM00020 Trypsin-like serine protease NJ56_14870 SM00342 helix_turn_helix, arabinose operon control protein NJ56_14885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_14885 SM00387 Histidine kinase-like ATPases NJ56_14885 SM00388 His Kinase A (phosphoacceptor) domain NJ56_14890 SM00448 cheY-homologous receiver domain NJ56_14890 SM00862 Transcriptional regulatory protein, C terminal NJ56_14910 SM01002 Alanine dehydrogenase/PNT, C-terminal domain NJ56_14910 SM01003 Alanine dehydrogenase/PNT, N-terminal domain NJ56_14925 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family NJ56_14930 SM01007 Class II Aldolase and Adducin N-terminal domain NJ56_14945 SM00420 helix_turn_helix, Deoxyribose operon repressor NJ56_14945 SM01134 NJ56_14945 NJ56_14960 SM00100 Cyclic nucleotide-monophosphate binding domain NJ56_14960 SM00419 helix_turn_helix, cAMP Regulatory protein NJ56_14970 SM00871 Bacterial transcription activator, effector binding domain NJ56_15045 SM00644 NJ56_15045 NJ56_15150 SM00342 helix_turn_helix, arabinose operon control protein NJ56_15160 SM00900 NJ56_15160 NJ56_15170 SM00478 endonuclease III NJ56_15170 SM00525 NJ56_15170 NJ56_15175 SM00357 Cold shock protein domain NJ56_15175 SM00955 NJ56_15175 NJ56_15180 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NJ56_15180 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NJ56_15180 SM00091 PAS domain NJ56_15180 SM00267 diguanylate cyclase NJ56_15200 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family NJ56_15215 SM00028 Tetratricopeptide repeats NJ56_15225 SM00014 Acid phosphatase homologues NJ56_15255 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NJ56_15255 SM00437 Bacterial DNA topoisomerase I DNA-binding domain NJ56_15255 SM00493 NJ56_15255 NJ56_15275 SM00822 NJ56_15275 NJ56_15285 SM00363 S4 RNA-binding domain NJ56_15295 SM00481 DNA polymerase alpha chain like domain NJ56_15330 SM00749 bacterial OsmY and nodulation domain NJ56_15370 SM00421 helix_turn_helix, Lux Regulon NJ56_15400 SM00862 Transcriptional regulatory protein, C terminal NJ56_15435 SM00155 Phospholipase D. Active site motifs. NJ56_15445 SM00382 ATPases associated with a variety of cellular activities NJ56_15450 SM00382 ATPases associated with a variety of cellular activities NJ56_15500 SM00528 Domain in histone-like proteins of HNS family NJ56_15505 SM00984 UDP binding domain NJ56_15510 SM00448 cheY-homologous receiver domain NJ56_15570 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NJ56_15570 SM00437 Bacterial DNA topoisomerase I DNA-binding domain NJ56_15570 SM00493 NJ56_15570 NJ56_15590 SM00870 NJ56_15590 NJ56_15610 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NJ56_15640 SM00763 PrkA AAA domain NJ56_15665 SM00052 Putative diguanylate phosphodiesterase NJ56_15665 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NJ56_15665 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NJ56_15665 SM00091 PAS domain NJ56_15665 SM00267 diguanylate cyclase NJ56_15680 SM01005 Alanine racemase, C-terminal domain NJ56_15695 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_15750 SM00341 Helicase and RNase D C-terminal NJ56_15750 SM00474 3'-5' exonuclease NJ56_15770 SM00491 NJ56_15770 NJ56_15815 SM00257 Lysin motif NJ56_15825 SM00382 ATPases associated with a variety of cellular activities NJ56_15840 SM00382 ATPases associated with a variety of cellular activities NJ56_15845 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NJ56_15870 SM00834 Putative regulatory protein NJ56_15905 SM00836 DALR anticodon binding domain NJ56_15905 SM01016 Arginyl tRNA synthetase N terminal dom NJ56_15915 SM00912 haemagglutination activity domain NJ56_15965 SM00481 DNA polymerase alpha chain like domain NJ56_15995 SM00267 diguanylate cyclase NJ56_16025 SM00937 NJ56_16025 NJ56_16045 SM01400 NJ56_16045 NJ56_16075 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NJ56_16075 SM00382 ATPases associated with a variety of cellular activities NJ56_16155 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NJ56_16190 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_16190 SM00866 NJ56_16190 NJ56_16235 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_16255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_16255 SM00387 Histidine kinase-like ATPases NJ56_16275 SM00342 helix_turn_helix, arabinose operon control protein NJ56_16300 SM00382 ATPases associated with a variety of cellular activities NJ56_16310 SM00235 Zinc-dependent metalloprotease NJ56_16320 SM00387 Histidine kinase-like ATPases NJ56_16325 SM00448 cheY-homologous receiver domain NJ56_16335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_16355 SM00421 helix_turn_helix, Lux Regulon NJ56_16360 SM01329 NJ56_16360 NJ56_16395 SM00448 cheY-homologous receiver domain NJ56_16395 SM00862 Transcriptional regulatory protein, C terminal NJ56_16400 SM00387 Histidine kinase-like ATPases NJ56_16400 SM00388 His Kinase A (phosphoacceptor) domain NJ56_16405 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. NJ56_16430 SM00382 ATPases associated with a variety of cellular activities NJ56_16445 SM00487 DEAD-like helicases superfamily NJ56_16445 SM00490 helicase superfamily c-terminal domain NJ56_16445 SM00982 NJ56_16445 NJ56_16445 SM01058 CarD-like/TRCF domain NJ56_16520 SM00825 Beta-ketoacyl synthase NJ56_16530 SM00822 NJ56_16530 NJ56_16535 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. NJ56_16565 SM00363 S4 RNA-binding domain NJ56_16575 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_16610 SM00421 helix_turn_helix, Lux Regulon NJ56_16620 SM00450 Rhodanese Homology Domain NJ56_16665 SM01091 Transporter associated domain NJ56_16670 SM00947 Carbonic anhydrase NJ56_16690 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase NJ56_16695 SM00992 Hemimethylated DNA-binding protein YccV like NJ56_16700 SM00881 CoA binding domain NJ56_16710 SM00851 MGS-like domain NJ56_16780 SM00382 ATPases associated with a variety of cellular activities NJ56_16785 SM00981 NJ56_16785 NJ56_16830 SM00849 Metallo-beta-lactamase superfamily NJ56_16885 SM00357 Cold shock protein domain NJ56_16890 SM00357 Cold shock protein domain NJ56_16895 SM01150 NJ56_16895 NJ56_16905 SM00382 ATPases associated with a variety of cellular activities NJ56_16910 SM00849 Metallo-beta-lactamase superfamily NJ56_16915 SM00411 bacterial (prokaryotic) histone like domain NJ56_16920 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_16940 SM00870 NJ56_16940 NJ56_16975 SM00382 ATPases associated with a variety of cellular activities NJ56_16985 SM00843 NJ56_16985 NJ56_16990 SM00344 helix_turn_helix ASNC type NJ56_17000 SM00382 ATPases associated with a variety of cellular activities NJ56_17005 SM00382 ATPases associated with a variety of cellular activities NJ56_17015 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_17020 SM00382 ATPases associated with a variety of cellular activities NJ56_17020 SM01086 C-terminal, D2-small domain, of ClpB protein NJ56_17030 SM00357 Cold shock protein domain NJ56_17035 SM00382 ATPases associated with a variety of cellular activities NJ56_17095 SM00382 ATPases associated with a variety of cellular activities NJ56_17100 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_17100 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NJ56_17115 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_17115 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NJ56_17140 SM00382 ATPases associated with a variety of cellular activities NJ56_17175 SM00014 Acid phosphatase homologues NJ56_17180 SM01133 NJ56_17180 NJ56_17185 SM00420 helix_turn_helix, Deoxyribose operon repressor NJ56_17185 SM01134 NJ56_17185 NJ56_17200 SM00936 Penicillin-binding protein 5, C-terminal domain NJ56_17205 SM00116 Domain in cystathionine beta-synthase and other proteins. NJ56_17275 SM01350 NJ56_17275 NJ56_17290 SM01091 Transporter associated domain NJ56_17355 SM00919 Malic enzyme, NAD binding domain NJ56_17355 SM01274 NJ56_17355 NJ56_17370 SM00382 ATPases associated with a variety of cellular activities NJ56_17380 SM00354 helix_turn _helix lactose operon repressor NJ56_17405 SM00829 Enoylreductase NJ56_17420 SM00852 Probable molybdopterin binding domain NJ56_17430 SM00382 ATPases associated with a variety of cellular activities NJ56_17470 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_17470 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NJ56_17480 SM00382 ATPases associated with a variety of cellular activities NJ56_17495 SM00487 DEAD-like helicases superfamily NJ56_17495 SM00491 NJ56_17495 NJ56_17530 SM00382 ATPases associated with a variety of cellular activities NJ56_17545 SM00450 Rhodanese Homology Domain NJ56_17570 SM00382 ATPases associated with a variety of cellular activities NJ56_17585 SM00507 HNH nucleases NJ56_17590 SM01118 NJ56_17590 NJ56_17655 SM00530 Helix-turn-helix XRE-family like proteins NJ56_17890 SM00530 Helix-turn-helix XRE-family like proteins NJ56_18020 SM00857 Resolvase, N terminal domain NJ56_18045 SM00470 ParB-like nuclease domain NJ56_18070 SM00470 ParB-like nuclease domain NJ56_18115 SM00530 Helix-turn-helix XRE-family like proteins NJ56_18135 SM00421 helix_turn_helix, Lux Regulon NJ56_18270 SM00901 NJ56_18270