NJ56_07805 299786d16f1d803138893d4ba121bba1 370 SMART SM00382 28 211 1.3E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_07805 299786d16f1d803138893d4ba121bba1 370 Gene3D G3DSA:2.40.50.140 291 345 7.6E-29 T 15-10-2018 NJ56_07805 299786d16f1d803138893d4ba121bba1 370 Pfam PF00005 ABC transporter 20 161 1.0E-33 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_07805 299786d16f1d803138893d4ba121bba1 370 Pfam PF08402 TOBE domain 281 353 6.5E-10 T 15-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 NJ56_07805 299786d16f1d803138893d4ba121bba1 370 Gene3D G3DSA:2.40.50.100 239 290 1.8E-18 T 15-10-2018 NJ56_07805 299786d16f1d803138893d4ba121bba1 370 Gene3D G3DSA:3.40.50.300 1 238 2.5E-75 T 15-10-2018 NJ56_07805 299786d16f1d803138893d4ba121bba1 370 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_07805 299786d16f1d803138893d4ba121bba1 370 SUPERFAMILY SSF52540 4 243 1.96E-85 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_07805 299786d16f1d803138893d4ba121bba1 370 SUPERFAMILY SSF50331 236 362 3.19E-30 T 15-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal NJ56_05425 a82058a20dd8b7c00804618131c37a87 93 SUPERFAMILY SSF54534 4 90 2.55E-30 T 15-10-2018 NJ56_05425 a82058a20dd8b7c00804618131c37a87 93 Pfam PF13616 PPIC-type PPIASE domain 15 90 5.6E-24 T 15-10-2018 NJ56_05425 a82058a20dd8b7c00804618131c37a87 93 Gene3D G3DSA:3.10.50.40 2 93 1.1E-37 T 15-10-2018 NJ56_07880 8ae1b7ca3c629f7fdbeb4e7c8f86a35b 117 Gene3D G3DSA:3.90.1150.30 1 117 1.4E-39 T 15-10-2018 IPR038056 YjbR-like superfamily NJ56_07880 8ae1b7ca3c629f7fdbeb4e7c8f86a35b 117 Pfam PF04237 YjbR 12 102 6.8E-19 T 15-10-2018 IPR007351 Uncharacterised protein YjbR NJ56_07880 8ae1b7ca3c629f7fdbeb4e7c8f86a35b 117 SUPERFAMILY SSF142906 1 115 2.09E-35 T 15-10-2018 IPR038056 YjbR-like superfamily NJ56_00530 e5b00493dac3e246b5f8a3107cefacab 266 Gene3D G3DSA:3.40.50.1360 1 266 1.3E-115 T 15-10-2018 NJ56_00530 e5b00493dac3e246b5f8a3107cefacab 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 40.277 T 15-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 NJ56_00530 e5b00493dac3e246b5f8a3107cefacab 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 15-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 NJ56_00530 e5b00493dac3e246b5f8a3107cefacab 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 11 229 3.7E-19 T 15-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 NJ56_00530 e5b00493dac3e246b5f8a3107cefacab 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 1.2E-137 T 15-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 NJ56_00530 e5b00493dac3e246b5f8a3107cefacab 266 SUPERFAMILY SSF100950 1 263 2.09E-104 T 15-10-2018 IPR037171 NagB/RpiA transferase-like NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 SUPERFAMILY SSF82866 299 499 2.88E-46 T 15-10-2018 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 SUPERFAMILY SSF82714 192 275 1.96E-16 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 SUPERFAMILY SSF82714 719 801 1.96E-15 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 Gene3D G3DSA:3.30.70.1320 144 335 9.1E-294 T 15-10-2018 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 SUPERFAMILY SSF82693 49 142 1.62E-22 T 15-10-2018 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 Gene3D G3DSA:3.30.70.1430 49 811 9.1E-294 T 15-10-2018 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 SUPERFAMILY SSF82693 565 662 3.31E-15 T 15-10-2018 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 Gene3D G3DSA:3.30.70.1440 663 861 9.1E-294 T 15-10-2018 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 Hamap MF_01423 Multidrug resistance protein MdtB [mdtB]. 1 1037 34.629 T 15-10-2018 IPR022831 Multidrug resistance protein MdtB NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 SUPERFAMILY SSF82866 799 1025 9.55E-46 T 15-10-2018 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 Gene3D G3DSA:1.20.1640.10 19 512 9.1E-294 T 15-10-2018 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 Gene3D G3DSA:3.30.70.1430 567 662 9.1E-294 T 15-10-2018 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 Gene3D G3DSA:3.30.2090.10 188 278 9.1E-294 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 Gene3D G3DSA:1.20.1640.10 513 1019 9.1E-294 T 15-10-2018 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 Gene3D G3DSA:3.30.2090.10 715 803 9.1E-294 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 Pfam PF00873 AcrB/AcrD/AcrF family 13 1022 0.0 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 SUPERFAMILY SSF82693 146 333 5.93E-21 T 15-10-2018 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 7.1E-83 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 7.1E-83 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 7.1E-83 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 7.1E-83 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 7.1E-83 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 7.1E-83 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 7.1E-83 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 7.1E-83 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10745 dddc0833f9463358f9c88c8b4f21854d 1048 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 7.1E-83 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_07435 78e47316732e9c3787390ae4e8659f37 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 15-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07435 78e47316732e9c3787390ae4e8659f37 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 32.049 T 15-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07435 78e47316732e9c3787390ae4e8659f37 130 Pfam PF00410 Ribosomal protein S8 5 129 2.5E-48 T 15-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07435 78e47316732e9c3787390ae4e8659f37 130 Gene3D G3DSA:3.30.1490.10 73 130 1.4E-25 T 15-10-2018 NJ56_07435 78e47316732e9c3787390ae4e8659f37 130 SUPERFAMILY SSF56047 5 129 3.66E-47 T 15-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07435 78e47316732e9c3787390ae4e8659f37 130 Gene3D G3DSA:3.30.1370.30 2 72 2.7E-28 T 15-10-2018 NJ56_02500 099381b3ed25676a635331bf8bfc8d92 159 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 1.1E-46 T 15-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 NJ56_02500 099381b3ed25676a635331bf8bfc8d92 159 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 7.4E-38 T 15-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 NJ56_02500 099381b3ed25676a635331bf8bfc8d92 159 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 15-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 NJ56_02500 099381b3ed25676a635331bf8bfc8d92 159 Gene3D G3DSA:3.30.70.560 1 159 1.2E-60 T 15-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 NJ56_02500 099381b3ed25676a635331bf8bfc8d92 159 SUPERFAMILY SSF55083 1 154 3.14E-54 T 15-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 SMART SM00841 131 186 3.5E-32 T 15-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 2.4E-25 T 15-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 Gene3D G3DSA:2.40.50.140 66 129 2.6E-29 T 15-10-2018 NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 Gene3D G3DSA:2.30.30.30 1 65 2.3E-28 T 15-10-2018 IPR014722 Ribosomal protein L2, domain 2 NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 TIGRFAM TIGR00038 efp: translation elongation factor P 4 187 3.8E-76 T 15-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 SMART SM01185 69 123 5.0E-25 T 15-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 SUPERFAMILY SSF50104 4 64 1.2E-18 T 15-10-2018 IPR008991 Translation protein SH3-like domain superfamily NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 SUPERFAMILY SSF50249 130 187 2.74E-18 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 15-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 PIRSF PIRSF005901 2 188 1.6E-65 T 15-10-2018 IPR020599 Translation elongation factor P/YeiP NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 72 123 2.6E-21 T 15-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 62 1.3E-24 T 15-10-2018 IPR013185 Translation elongation factor, KOW-like NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 Gene3D G3DSA:2.40.50.140 130 188 1.4E-27 T 15-10-2018 NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 SUPERFAMILY SSF50249 69 128 3.17E-17 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_04235 ec0ebebf741cda8d4b5c4321172facef 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 49.777 T 15-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 NJ56_01520 2b4e191e36e82cac00a9539f074bb102 369 SUPERFAMILY SSF53597 145 363 8.25E-57 T 15-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 NJ56_01520 2b4e191e36e82cac00a9539f074bb102 369 PIRSF PIRSF006769 1 368 2.8E-128 T 15-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 NJ56_01520 2b4e191e36e82cac00a9539f074bb102 369 Gene3D G3DSA:3.40.140.10 1 141 2.5E-46 T 15-10-2018 NJ56_01520 2b4e191e36e82cac00a9539f074bb102 369 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 51 89 - T 15-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 NJ56_01520 2b4e191e36e82cac00a9539f074bb102 369 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 2 100 2.9E-20 T 15-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain NJ56_01520 2b4e191e36e82cac00a9539f074bb102 369 Gene3D G3DSA:3.40.430.10 142 368 2.6E-73 T 15-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 NJ56_01520 2b4e191e36e82cac00a9539f074bb102 369 SUPERFAMILY SSF53927 4 146 3.39E-49 T 15-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 NJ56_01520 2b4e191e36e82cac00a9539f074bb102 369 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 147 366 8.4E-69 T 15-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 NJ56_01520 2b4e191e36e82cac00a9539f074bb102 369 Pfam PF01872 RibD C-terminal domain 148 361 1.2E-54 T 15-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 NJ56_01520 2b4e191e36e82cac00a9539f074bb102 369 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 8 362 1.8E-141 T 15-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 NJ56_12960 b6f8f1307b84d9abcfff66861b870c5b 260 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 260 6.2E-27 T 15-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain NJ56_12960 b6f8f1307b84d9abcfff66861b870c5b 260 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 259 2.1E-120 T 15-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 NJ56_12960 b6f8f1307b84d9abcfff66861b870c5b 260 Pfam PF00460 Flagella basal body rod protein 5 35 8.8E-14 T 15-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 NJ56_12960 b6f8f1307b84d9abcfff66861b870c5b 260 SUPERFAMILY SSF117143 93 222 5.1E-36 T 15-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like NJ56_12960 b6f8f1307b84d9abcfff66861b870c5b 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 1.0E-49 T 15-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G NJ56_12960 b6f8f1307b84d9abcfff66861b870c5b 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 145 243 2.2E-29 T 15-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G NJ56_12960 b6f8f1307b84d9abcfff66861b870c5b 260 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 15-10-2018 IPR019776 Flagellar basal body rod protein, conserved site NJ56_11150 952d54fa8e9c4416c29288c2e5348abd 85 SUPERFAMILY SSF55594 1 82 9.42E-27 T 15-10-2018 IPR035895 HPr-like superfamily NJ56_11150 952d54fa8e9c4416c29288c2e5348abd 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 2.1E-30 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_11150 952d54fa8e9c4416c29288c2e5348abd 85 Gene3D G3DSA:3.30.1340.10 1 85 5.1E-35 T 15-10-2018 IPR035895 HPr-like superfamily NJ56_11150 952d54fa8e9c4416c29288c2e5348abd 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.9E-19 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_11150 952d54fa8e9c4416c29288c2e5348abd 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.9E-19 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_11150 952d54fa8e9c4416c29288c2e5348abd 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.9E-19 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_11150 952d54fa8e9c4416c29288c2e5348abd 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 15-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site NJ56_11150 952d54fa8e9c4416c29288c2e5348abd 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 5.5E-28 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_11150 952d54fa8e9c4416c29288c2e5348abd 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 15-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site NJ56_11450 cf1adf97b6d45d587a08ccdb93716afa 405 Gene3D G3DSA:3.40.47.10 4 258 8.7E-64 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_11450 cf1adf97b6d45d587a08ccdb93716afa 405 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 253 360 5.9E-30 T 15-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal NJ56_11450 cf1adf97b6d45d587a08ccdb93716afa 405 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 245 1.4E-40 T 15-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal NJ56_11450 cf1adf97b6d45d587a08ccdb93716afa 405 SUPERFAMILY SSF53901 1 250 4.45E-64 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_11450 cf1adf97b6d45d587a08ccdb93716afa 405 SUPERFAMILY SSF53901 214 403 6.58E-62 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_11450 cf1adf97b6d45d587a08ccdb93716afa 405 SMART SM00825 Beta-ketoacyl synthase 4 405 3.1E-13 T 15-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NJ56_11450 cf1adf97b6d45d587a08ccdb93716afa 405 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 153 169 - T 15-10-2018 IPR018201 Beta-ketoacyl synthase, active site NJ56_11450 cf1adf97b6d45d587a08ccdb93716afa 405 Gene3D G3DSA:3.40.47.10 259 405 3.9E-51 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 SUPERFAMILY SSF52540 129 375 1.98E-38 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 SMART SM00490 517 601 7.5E-15 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 Pfam PF00176 SNF2 family N-terminal domain 174 441 1.5E-19 T 15-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 SUPERFAMILY SSF52540 273 645 2.41E-42 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 Gene3D G3DSA:3.30.360.80 713 786 8.3E-32 T 15-10-2018 NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 SMART SM00487 150 342 3.3E-22 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 Gene3D G3DSA:3.40.50.10810 150 428 2.4E-109 T 15-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 Gene3D G3DSA:2.30.30.140 1 53 1.7E-23 T 15-10-2018 NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 Pfam PF00271 Helicase conserved C-terminal domain 492 601 6.0E-14 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 966 29.047 T 15-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 Gene3D G3DSA:3.40.50.300 429 633 2.3E-47 T 15-10-2018 NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 Pfam PF12137 RNA polymerase recycling family C-terminal 605 965 5.3E-155 T 15-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 NJ56_02865 6155005adb97340f22ac334eb4c0419c 968 Gene3D G3DSA:2.30.30.930 55 114 2.7E-28 T 15-10-2018 NJ56_06550 954cb24d66faec40270bd9ccd5f2c7cf 276 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 34 274 2.6E-88 T 15-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 NJ56_06550 954cb24d66faec40270bd9ccd5f2c7cf 276 SUPERFAMILY SSF53927 24 274 1.9E-79 T 15-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 NJ56_06550 954cb24d66faec40270bd9ccd5f2c7cf 276 Pfam PF02634 FdhD/NarQ family 38 273 2.1E-71 T 15-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 NJ56_06550 954cb24d66faec40270bd9ccd5f2c7cf 276 Gene3D G3DSA:3.10.20.10 40 125 4.0E-10 T 15-10-2018 NJ56_06550 954cb24d66faec40270bd9ccd5f2c7cf 276 Gene3D G3DSA:3.40.140.10 128 276 2.6E-45 T 15-10-2018 NJ56_06550 954cb24d66faec40270bd9ccd5f2c7cf 276 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 13 274 32.935 T 15-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 NJ56_06550 954cb24d66faec40270bd9ccd5f2c7cf 276 PIRSF PIRSF015626 5 276 8.1E-79 T 15-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 Gene3D G3DSA:3.30.70.330 489 562 4.4E-9 T 15-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 Pfam PF00271 Helicase conserved C-terminal domain 234 342 6.8E-29 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 Gene3D G3DSA:3.40.50.300 2 213 1.1E-76 T 15-10-2018 NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 Pfam PF12343 Cold shock protein DEAD box A 584 656 1.8E-20 T 15-10-2018 IPR021046 Cold-shock protein, DEAD box A, C-terminal GO:0016817 NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 SMART SM00490 261 342 1.1E-31 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 Pfam PF03880 DbpA RNA binding domain 492 561 2.5E-19 T 15-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 Gene3D G3DSA:3.40.50.300 216 433 4.0E-49 T 15-10-2018 NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 Pfam PF00270 DEAD/DEAH box helicase 32 196 9.3E-51 T 15-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 SUPERFAMILY SSF52540 5 210 7.29E-73 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 15-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 2 563 46.74 T 15-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 SMART SM00487 26 224 2.4E-64 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_03750 7ab3aa5bc22bb9fe0f5d988adc095e31 656 SUPERFAMILY SSF52540 148 356 1.78E-49 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_08115 0811039259aad3d689ab0ff3ae69f969 471 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 15-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 NJ56_08115 0811039259aad3d689ab0ff3ae69f969 471 Pfam PF02378 Phosphotransferase system, EIIC 112 404 5.6E-33 T 15-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 NJ56_08115 0811039259aad3d689ab0ff3ae69f969 471 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 6 460 3.1E-208 T 15-10-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00500+2.7.1.201 NJ56_08115 0811039259aad3d689ab0ff3ae69f969 471 SUPERFAMILY SSF55604 10 82 2.22E-19 T 15-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 NJ56_08115 0811039259aad3d689ab0ff3ae69f969 471 Pfam PF00367 phosphotransferase system, EIIB 11 39 8.1E-12 T 15-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 NJ56_08115 0811039259aad3d689ab0ff3ae69f969 471 Gene3D G3DSA:3.30.1360.60 2 78 1.5E-21 T 15-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 NJ56_08115 0811039259aad3d689ab0ff3ae69f969 471 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 30 111 1.9E-14 T 15-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 NJ56_16080 c118be01d5e791b98f5b5cce600f5e10 340 PIRSF PIRSF005644 3 340 4.1E-119 T 15-10-2018 IPR011854 Carbamoyl dehydratase HypE NJ56_16080 c118be01d5e791b98f5b5cce600f5e10 340 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 8 340 3.7E-133 T 15-10-2018 IPR011854 Carbamoyl dehydratase HypE NJ56_16080 c118be01d5e791b98f5b5cce600f5e10 340 Gene3D G3DSA:3.30.1330.10 8 162 8.5E-55 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_16080 c118be01d5e791b98f5b5cce600f5e10 340 Pfam PF02769 AIR synthase related protein, C-terminal domain 169 314 1.9E-21 T 15-10-2018 IPR010918 PurM-like, C-terminal domain NJ56_16080 c118be01d5e791b98f5b5cce600f5e10 340 SUPERFAMILY SSF56042 166 331 2.24E-38 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_16080 c118be01d5e791b98f5b5cce600f5e10 340 Gene3D G3DSA:3.90.650.10 163 340 4.4E-49 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_16080 c118be01d5e791b98f5b5cce600f5e10 340 Pfam PF00586 AIR synthase related protein, N-terminal domain 49 157 3.4E-16 T 15-10-2018 IPR016188 PurM-like, N-terminal domain NJ56_16080 c118be01d5e791b98f5b5cce600f5e10 340 SUPERFAMILY SSF55326 9 159 5.41E-32 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_02735 ea79649a9f595774c67c89d2c964971a 453 Gene3D G3DSA:3.90.190.20 313 453 9.2E-48 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_02735 ea79649a9f595774c67c89d2c964971a 453 SUPERFAMILY SSF53244 314 447 2.2E-38 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_02735 ea79649a9f595774c67c89d2c964971a 453 Pfam PF08245 Mur ligase middle domain 106 294 1.8E-48 T 15-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 NJ56_02735 ea79649a9f595774c67c89d2c964971a 453 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 447 4.6E-142 T 15-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02735 ea79649a9f595774c67c89d2c964971a 453 Gene3D G3DSA:3.40.1390.10 1 80 7.2E-28 T 15-10-2018 NJ56_02735 ea79649a9f595774c67c89d2c964971a 453 SUPERFAMILY SSF63418 1 97 1.57E-28 T 15-10-2018 IPR035911 MurE/MurF, N-terminal NJ56_02735 ea79649a9f595774c67c89d2c964971a 453 Gene3D G3DSA:3.40.1190.10 81 312 1.3E-86 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_02735 ea79649a9f595774c67c89d2c964971a 453 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 448 34.407 T 15-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02735 ea79649a9f595774c67c89d2c964971a 453 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 392 2.0E-13 T 15-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 NJ56_02735 ea79649a9f595774c67c89d2c964971a 453 SUPERFAMILY SSF53623 100 311 1.96E-58 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_02735 ea79649a9f595774c67c89d2c964971a 453 Pfam PF01225 Mur ligase family, catalytic domain 24 92 1.7E-11 T 15-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 NJ56_16520 347101c41b5f4971711a419d22bb6366 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 15-10-2018 IPR018201 Beta-ketoacyl synthase, active site NJ56_16520 347101c41b5f4971711a419d22bb6366 413 Gene3D G3DSA:3.40.47.10 1 255 7.4E-88 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_16520 347101c41b5f4971711a419d22bb6366 413 SMART SM00825 Beta-ketoacyl synthase 6 413 3.6E-14 T 15-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NJ56_16520 347101c41b5f4971711a419d22bb6366 413 PIRSF PIRSF000447 1 413 8.8E-200 T 15-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 NJ56_16520 347101c41b5f4971711a419d22bb6366 413 SUPERFAMILY SSF53901 215 412 3.65E-73 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_16520 347101c41b5f4971711a419d22bb6366 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 411 1.2E-194 T 15-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 NJ56_16520 347101c41b5f4971711a419d22bb6366 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 2.9E-40 T 15-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal NJ56_16520 347101c41b5f4971711a419d22bb6366 413 SUPERFAMILY SSF53901 3 252 3.84E-76 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_16520 347101c41b5f4971711a419d22bb6366 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 6.1E-62 T 15-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal NJ56_16520 347101c41b5f4971711a419d22bb6366 413 Gene3D G3DSA:3.40.47.10 261 413 9.7E-56 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 584 33.575 T 15-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 Gene3D G3DSA:2.40.50.140 1 105 2.6E-35 T 15-10-2018 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 SUPERFAMILY SSF55261 288 419 3.71E-46 T 15-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 Pfam PF02938 GAD domain 307 406 7.0E-31 T 15-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 SUPERFAMILY SSF50249 1 105 2.29E-34 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 1.3E-26 T 15-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 1.3E-26 T 15-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 1.3E-26 T 15-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 1.3E-26 T 15-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 Gene3D G3DSA:3.30.1360.30 271 420 1.8E-198 T 15-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 3.1E-16 T 15-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 Gene3D G3DSA:3.30.930.10 118 578 1.8E-198 T 15-10-2018 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 584 1.6E-274 T 15-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 558 1.7E-108 T 15-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_15865 15c73e630b38326a26eaf329dc1aca91 598 SUPERFAMILY SSF55681 108 583 2.31E-105 T 15-10-2018 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 61 85 7.0E-11 T 15-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 420 442 7.0E-11 T 15-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 87 107 7.0E-11 T 15-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 268 290 7.0E-11 T 15-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 124 6.0E-23 T 15-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 250 276 5.4E-56 T 15-10-2018 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 318 330 5.4E-56 T 15-10-2018 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 85 110 5.4E-56 T 15-10-2018 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 421 440 5.4E-56 T 15-10-2018 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 228 249 5.4E-56 T 15-10-2018 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 113 133 5.4E-56 T 15-10-2018 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 160 181 5.4E-56 T 15-10-2018 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 611 3.1E-232 T 15-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11720 c08d5a906861888f91ea49c14b08552c 614 Pfam PF00361 Proton-conducting membrane transporter 136 428 4.8E-96 T 15-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 Gene3D G3DSA:1.20.200.10 143 410 6.6E-114 T 15-10-2018 NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 15-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 Pfam PF00206 Lyase 13 345 1.6E-107 T 15-10-2018 IPR022761 Fumarate lyase, N-terminal NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 6.1E-27 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 6.1E-27 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 6.1E-27 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 6.1E-27 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 Gene3D G3DSA:1.10.40.30 411 460 2.4E-29 T 15-10-2018 NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 6 474 8.7E-264 T 15-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 4.8E-5 T 15-10-2018 NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 PRINTS PR00145 Argininosuccinate lyase family signature 137 159 4.8E-5 T 15-10-2018 NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 4.8E-5 T 15-10-2018 NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 Gene3D G3DSA:1.10.275.10 6 142 1.8E-58 T 15-10-2018 IPR024083 Fumarase/histidase, N-terminal NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 SUPERFAMILY SSF48557 2 458 4.12E-142 T 15-10-2018 IPR008948 L-Aspartase-like GO:0003824 NJ56_04265 70936fef111407a6d7386d2563ddb3a9 478 Pfam PF10415 Fumarase C C-terminus 411 464 4.1E-17 T 15-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 NJ56_16275 3de8bc8b782902514e1d7ac644cedfbe 292 Gene3D G3DSA:1.10.10.60 188 236 2.0E-14 T 15-10-2018 NJ56_16275 3de8bc8b782902514e1d7ac644cedfbe 292 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 242 284 - T 15-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 NJ56_16275 3de8bc8b782902514e1d7ac644cedfbe 292 Pfam PF12833 Helix-turn-helix domain 211 289 3.1E-21 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_16275 3de8bc8b782902514e1d7ac644cedfbe 292 SUPERFAMILY SSF46689 241 291 1.84E-12 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_16275 3de8bc8b782902514e1d7ac644cedfbe 292 SMART SM00342 205 288 7.4E-31 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_16275 3de8bc8b782902514e1d7ac644cedfbe 292 SUPERFAMILY SSF46689 189 239 1.16E-10 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_16275 3de8bc8b782902514e1d7ac644cedfbe 292 Gene3D G3DSA:1.10.10.60 237 291 9.9E-17 T 15-10-2018 NJ56_01800 4cff4ecb527231702f5d8dbb5e846b4f 251 PIRSF PIRSF005457 1 251 2.7E-93 T 15-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 NJ56_01800 4cff4ecb527231702f5d8dbb5e846b4f 251 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 251 2.7E-105 T 15-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 NJ56_01800 4cff4ecb527231702f5d8dbb5e846b4f 251 SMART SM00849 11 165 4.3E-38 T 15-10-2018 IPR001279 Metallo-beta-lactamase NJ56_01800 4cff4ecb527231702f5d8dbb5e846b4f 251 SUPERFAMILY SSF56281 1 251 9.17E-70 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_01800 4cff4ecb527231702f5d8dbb5e846b4f 251 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 251 46.25 T 15-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 NJ56_01800 4cff4ecb527231702f5d8dbb5e846b4f 251 Gene3D G3DSA:3.60.15.10 1 251 3.8E-98 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_01800 4cff4ecb527231702f5d8dbb5e846b4f 251 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 251 1.7E-23 T 15-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 NJ56_01800 4cff4ecb527231702f5d8dbb5e846b4f 251 Pfam PF00753 Metallo-beta-lactamase superfamily 14 165 4.3E-18 T 15-10-2018 IPR001279 Metallo-beta-lactamase NJ56_02495 62dbae424f4614933481eea78cd5baf8 497 Gene3D G3DSA:1.10.3090.10 223 474 5.2E-102 T 15-10-2018 NJ56_02495 62dbae424f4614933481eea78cd5baf8 497 Pfam PF01743 Poly A polymerase head domain 91 225 1.0E-39 T 15-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 NJ56_02495 62dbae424f4614933481eea78cd5baf8 497 SUPERFAMILY SSF81301 62 221 1.2E-40 T 15-10-2018 NJ56_02495 62dbae424f4614933481eea78cd5baf8 497 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 252 312 6.2E-20 T 15-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 NJ56_02495 62dbae424f4614933481eea78cd5baf8 497 SUPERFAMILY SSF81891 223 434 6.67E-50 T 15-10-2018 NJ56_02495 62dbae424f4614933481eea78cd5baf8 497 Pfam PF12626 Polymerase A arginine-rich C-terminus 370 489 2.0E-42 T 15-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain NJ56_02495 62dbae424f4614933481eea78cd5baf8 497 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 54 488 38.767 T 15-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 NJ56_02495 62dbae424f4614933481eea78cd5baf8 497 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 60 489 4.6E-160 T 15-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 NJ56_02495 62dbae424f4614933481eea78cd5baf8 497 Gene3D G3DSA:3.30.460.10 57 222 2.2E-66 T 15-10-2018 NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 Gene3D G3DSA:1.50.10.100 246 634 7.4E-111 T 15-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 Gene3D G3DSA:2.60.220.10 915 1037 6.9E-36 T 15-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 Pfam PF09092 Lyase, N terminal 47 241 4.7E-55 T 15-10-2018 IPR015176 Lyase, N-terminal NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 Gene3D G3DSA:2.60.120.430 34 245 3.3E-63 T 15-10-2018 NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 PIRSF PIRSF034515 5 1037 0.0 T 15-10-2018 IPR024200 Chondroitin sulfate ABC endolyase GO:0005975|GO:0034000 NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 SUPERFAMILY SSF49785 35 244 1.79E-74 T 15-10-2018 IPR008979 Galactose-binding-like domain superfamily NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 Gene3D G3DSA:2.70.98.10 635 913 1.2E-97 T 15-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 SUPERFAMILY SSF74650 635 909 8.9E-83 T 15-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 SUPERFAMILY SSF49863 915 1035 1.37E-36 T 15-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 Pfam PF09093 Lyase, catalytic 258 619 4.8E-128 T 15-10-2018 IPR015177 Lyase, catalytic NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 SUPERFAMILY SSF48230 247 633 3.82E-144 T 15-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 NJ56_03360 1274d9f02fb41a37128f2c6a651f0e5d 1037 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 641 893 1.3E-31 T 15-10-2018 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 NJ56_02775 937b74dcbab0413d18dfc9ec51910e01 138 Pfam PF01797 Transposase IS200 like 16 134 1.9E-39 T 15-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 NJ56_02775 937b74dcbab0413d18dfc9ec51910e01 138 Gene3D G3DSA:3.30.70.1290 5 138 1.6E-40 T 15-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 NJ56_02775 937b74dcbab0413d18dfc9ec51910e01 138 SMART SM01321 14 134 7.9E-41 T 15-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 NJ56_02775 937b74dcbab0413d18dfc9ec51910e01 138 SUPERFAMILY SSF143422 6 135 1.07E-44 T 15-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 NJ56_03945 e1597dc3dbc036674fddab6109124c89 443 Gene3D G3DSA:3.10.580.10 193 346 2.8E-33 T 15-10-2018 NJ56_03945 e1597dc3dbc036674fddab6109124c89 443 Pfam PF01595 Domain of unknown function DUF21 6 197 8.7E-38 T 15-10-2018 IPR002550 CNNM, transmembrane domain NJ56_03945 e1597dc3dbc036674fddab6109124c89 443 Pfam PF03471 Transporter associated domain 347 425 3.5E-21 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_03945 e1597dc3dbc036674fddab6109124c89 443 SUPERFAMILY SSF56176 344 429 8.72E-23 T 15-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 NJ56_03945 e1597dc3dbc036674fddab6109124c89 443 SUPERFAMILY SSF54631 200 335 7.55E-21 T 15-10-2018 NJ56_03945 e1597dc3dbc036674fddab6109124c89 443 Gene3D G3DSA:3.30.465.10 347 428 1.1E-29 T 15-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 NJ56_03945 e1597dc3dbc036674fddab6109124c89 443 SMART SM00116 221 270 0.59 T 15-10-2018 IPR000644 CBS domain NJ56_03945 e1597dc3dbc036674fddab6109124c89 443 SMART SM00116 285 333 10.0 T 15-10-2018 IPR000644 CBS domain NJ56_03945 e1597dc3dbc036674fddab6109124c89 443 SMART SM01091 346 426 6.6E-28 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_03945 e1597dc3dbc036674fddab6109124c89 443 Pfam PF00571 CBS domain 287 333 0.003 T 15-10-2018 IPR000644 CBS domain NJ56_16190 2cadb7a63f2b57a09feeb170c70a8f9b 255 Gene3D G3DSA:3.40.1410.10 103 238 3.1E-35 T 15-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily NJ56_16190 2cadb7a63f2b57a09feeb170c70a8f9b 255 Gene3D G3DSA:1.10.10.10 17 85 4.2E-24 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_16190 2cadb7a63f2b57a09feeb170c70a8f9b 255 SUPERFAMILY SSF46785 17 88 3.96E-22 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_16190 2cadb7a63f2b57a09feeb170c70a8f9b 255 SMART SM00866 105 242 9.9E-32 T 15-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 NJ56_16190 2cadb7a63f2b57a09feeb170c70a8f9b 255 SUPERFAMILY SSF64288 72 248 5.5E-42 T 15-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily NJ56_16190 2cadb7a63f2b57a09feeb170c70a8f9b 255 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 20 249 1.6E-106 T 15-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 NJ56_16190 2cadb7a63f2b57a09feeb170c70a8f9b 255 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 84 4.6E-21 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_16190 2cadb7a63f2b57a09feeb170c70a8f9b 255 Pfam PF07702 UTRA domain 105 242 8.3E-35 T 15-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 NJ56_16190 2cadb7a63f2b57a09feeb170c70a8f9b 255 SMART SM00345 25 84 8.8E-21 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_16190 2cadb7a63f2b57a09feeb170c70a8f9b 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 4.7E-9 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_16190 2cadb7a63f2b57a09feeb170c70a8f9b 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 4.7E-9 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 720 811 8.83E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 1520 1611 8.83E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 1120 1211 8.83E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 PRINTS PR01369 Intimin signature 258 273 1.2E-15 T 15-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 PRINTS PR01369 Intimin signature 286 305 1.2E-15 T 15-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 PRINTS PR01369 Intimin signature 354 373 1.2E-15 T 15-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 PRINTS PR01369 Intimin signature 441 453 1.2E-15 T 15-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF11924 Inverse autotransporter, beta-domain 134 406 1.8E-113 T 15-10-2018 IPR024519 Inverse autotransporter, beta-domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 1913 1992 4.45E-20 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 1617 1707 2.2E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 618 707 2.0E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 1718 1807 2.0E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 1018 1107 2.0E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 1317 1407 2.2E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 517 607 1.4E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 1117 1207 2.5E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 1217 1307 2.5E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 717 807 2.5E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 817 907 2.5E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 917 1007 2.5E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 1518 1607 2.0E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 1817 1907 2.2E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Pfam PF02369 Bacterial Ig-like domain (group 1) 1418 1507 2.0E-11 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 1320 1411 9.22E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 620 711 8.83E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 1020 1111 8.83E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 1420 1511 8.83E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 1140 1211 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 1340 1411 2.1 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 940 1011 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 1740 1811 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 640 711 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 1840 1912 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 1540 1611 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 1240 1311 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 1040 1111 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 840 911 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 740 811 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 540 611 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 1640 1711 2.1 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00089 1440 1511 2.4 T 15-10-2018 IPR022409 PKD/Chitinase domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 1720 1811 8.83E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 920 1011 8.83E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 918 1007 5.2E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 1118 1207 5.2E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 1618 1707 3.8E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 1518 1607 5.2E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 1718 1807 5.2E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 618 707 5.2E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 818 907 5.2E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 1018 1107 5.2E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 1218 1307 5.2E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 1318 1407 3.8E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 1418 1507 5.2E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 518 607 5.2E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 718 807 5.2E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SMART SM00634 1818 1907 3.8E-17 T 15-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 1820 1910 1.96E-21 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 820 911 8.83E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 1220 1311 8.83E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 1513 1610 8.3E-22 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 1112 1210 1.0E-21 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 1212 1310 1.0E-21 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 912 1009 1.0E-21 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 1713 1810 8.3E-22 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 613 710 8.3E-22 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 1312 1409 9.1E-22 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 1413 1509 8.4E-22 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 1013 1110 8.3E-22 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 712 810 1.0E-21 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 812 910 1.0E-21 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 1612 1709 9.1E-22 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 1812 1909 9.1E-22 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.60.40.10 510 609 7.5E-22 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 520 611 1.41E-21 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 Gene3D G3DSA:2.40.160.160 169 413 1.3E-111 T 15-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily NJ56_07745 bf6fe4bbf7ab360c850f28ca6e6d892c 2103 SUPERFAMILY SSF49373 1620 1711 9.22E-22 T 15-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments NJ56_09075 c74de5dd687135de44432e3bf2a2a084 308 TIGRFAM TIGR03814 Gln_ase: glutaminase A 10 308 6.8E-132 T 15-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 NJ56_09075 c74de5dd687135de44432e3bf2a2a084 308 Pfam PF04960 Glutaminase 24 308 1.5E-113 T 15-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 NJ56_09075 c74de5dd687135de44432e3bf2a2a084 308 SUPERFAMILY SSF56601 7 308 8.83E-116 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_09075 c74de5dd687135de44432e3bf2a2a084 308 Gene3D G3DSA:3.40.710.10 3 308 1.4E-111 T 15-10-2018 NJ56_09075 c74de5dd687135de44432e3bf2a2a084 308 Hamap MF_00313 Glutaminase [glsA]. 6 308 46.627 T 15-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 4.2E-5 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 4.2E-5 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 4.2E-5 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 Pfam PF00106 short chain dehydrogenase 3 191 2.0E-41 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.2E-18 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.2E-18 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.2E-18 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.2E-18 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.2E-18 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 15-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 182 4.1E-4 T 15-10-2018 NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 Gene3D G3DSA:3.40.50.720 2 245 8.0E-61 T 15-10-2018 NJ56_01035 0840fdb925e771620492b19bd2b71d04 258 SUPERFAMILY SSF51735 2 237 3.4E-57 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 SMART SM00091 163 238 9.0E-4 T 15-10-2018 IPR000014 PAS domain NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 SMART SM00091 37 104 0.0017 T 15-10-2018 IPR000014 PAS domain NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 Gene3D G3DSA:3.30.70.270 283 461 1.5E-53 T 15-10-2018 NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 Pfam PF13426 PAS domain 49 150 5.2E-13 T 15-10-2018 IPR000014 PAS domain NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 Gene3D G3DSA:3.30.450.20 37 164 4.3E-25 T 15-10-2018 NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 SUPERFAMILY SSF55073 301 459 4.0E-43 T 15-10-2018 IPR029787 Nucleotide cyclase NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 292 459 6.2E-49 T 15-10-2018 IPR000160 GGDEF domain NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 Gene3D G3DSA:3.30.450.20 165 282 2.1E-16 T 15-10-2018 NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 184 289 1.4E-5 T 15-10-2018 IPR000014 PAS domain NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 47 154 3.1E-18 T 15-10-2018 IPR000014 PAS domain NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 Pfam PF08447 PAS fold 191 273 2.4E-10 T 15-10-2018 IPR013655 PAS fold-3 GO:0005515 NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 SMART SM00086 109 151 1.4E-6 T 15-10-2018 IPR001610 PAC motif NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 SMART SM00086 244 285 7.4 T 15-10-2018 IPR001610 PAC motif NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 Pfam PF00990 Diguanylate cyclase, GGDEF domain 296 457 6.7E-47 T 15-10-2018 IPR000160 GGDEF domain NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 SUPERFAMILY SSF55785 148 283 1.56E-15 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 SUPERFAMILY SSF55785 50 158 2.09E-18 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_13785 7a77856bd2be4b8636373f72074a50a1 463 SMART SM00267 285 461 2.7E-58 T 15-10-2018 IPR000160 GGDEF domain NJ56_05440 651faf636dec5a1a44b447c1b88ed564 808 Gene3D G3DSA:3.30.160.280 574 643 2.0E-17 T 15-10-2018 NJ56_05440 651faf636dec5a1a44b447c1b88ed564 808 Gene3D G3DSA:1.10.390.30 304 460 2.7E-48 T 15-10-2018 NJ56_05440 651faf636dec5a1a44b447c1b88ed564 808 SMART SM01276 77 375 1.2E-92 T 15-10-2018 IPR031161 Peptidase family M60 domain NJ56_05440 651faf636dec5a1a44b447c1b88ed564 808 Gene3D G3DSA:2.10.10.20 747 808 4.3E-5 T 15-10-2018 NJ56_05440 651faf636dec5a1a44b447c1b88ed564 808 Gene3D G3DSA:2.10.10.20 658 721 4.5E-5 T 15-10-2018 NJ56_05440 651faf636dec5a1a44b447c1b88ed564 808 SMART SM00495 750 801 2.2 T 15-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 NJ56_05440 651faf636dec5a1a44b447c1b88ed564 808 SMART SM00495 662 713 0.82 T 15-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 NJ56_05440 651faf636dec5a1a44b447c1b88ed564 808 SUPERFAMILY SSF51055 659 720 1.96E-5 T 15-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 NJ56_05440 651faf636dec5a1a44b447c1b88ed564 808 Gene3D G3DSA:1.10.1740.210 170 303 4.5E-37 T 15-10-2018 NJ56_05440 651faf636dec5a1a44b447c1b88ed564 808 Gene3D G3DSA:2.60.120.1250 37 169 3.0E-11 T 15-10-2018 NJ56_05440 651faf636dec5a1a44b447c1b88ed564 808 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 165 425 4.8E-53 T 15-10-2018 IPR031161 Peptidase family M60 domain NJ56_04165 521e2cd96205231df119f772bcecbd44 1097 Pfam PF12795 Mechanosensitive ion channel porin domain 18 246 4.4E-63 T 15-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain NJ56_04165 521e2cd96205231df119f772bcecbd44 1097 SUPERFAMILY SSF82689 974 1072 5.36E-15 T 15-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 NJ56_04165 521e2cd96205231df119f772bcecbd44 1097 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 467 803 1.8E-116 T 15-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 NJ56_04165 521e2cd96205231df119f772bcecbd44 1097 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 936 970 - T 15-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 NJ56_04165 521e2cd96205231df119f772bcecbd44 1097 Gene3D G3DSA:3.30.70.100 975 1067 3.2E-8 T 15-10-2018 NJ56_04165 521e2cd96205231df119f772bcecbd44 1097 Gene3D G3DSA:2.30.30.60 922 971 1.0E-10 T 15-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily NJ56_04165 521e2cd96205231df119f772bcecbd44 1097 Pfam PF00924 Mechanosensitive ion channel 864 1061 2.0E-52 T 15-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 NJ56_04165 521e2cd96205231df119f772bcecbd44 1097 SUPERFAMILY SSF82861 822 905 3.01E-8 T 15-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 NJ56_04165 521e2cd96205231df119f772bcecbd44 1097 SUPERFAMILY SSF50182 907 972 9.81E-17 T 15-10-2018 IPR010920 LSM domain superfamily NJ56_10790 156186a2391eb28ccb427bc3c41f74a6 489 SUPERFAMILY SSF161093 315 488 8.63E-46 T 15-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 NJ56_10790 156186a2391eb28ccb427bc3c41f74a6 489 TIGRFAM TIGR00400 mgtE: magnesium transporter 60 488 2.0E-76 T 15-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 NJ56_10790 156186a2391eb28ccb427bc3c41f74a6 489 Pfam PF01769 Divalent cation transporter 358 481 1.2E-22 T 15-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 NJ56_10790 156186a2391eb28ccb427bc3c41f74a6 489 Pfam PF00571 CBS domain 238 292 1.0E-5 T 15-10-2018 IPR000644 CBS domain NJ56_10790 156186a2391eb28ccb427bc3c41f74a6 489 Gene3D G3DSA:1.10.357.20 313 489 6.9E-45 T 15-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain NJ56_10790 156186a2391eb28ccb427bc3c41f74a6 489 SMART SM00924 71 174 1.7E-30 T 15-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain NJ56_10790 156186a2391eb28ccb427bc3c41f74a6 489 Pfam PF03448 MgtE intracellular N domain 71 171 1.2E-22 T 15-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain NJ56_10790 156186a2391eb28ccb427bc3c41f74a6 489 Gene3D G3DSA:1.25.60.10 50 169 1.1E-15 T 15-10-2018 IPR038076 MgtE, N-terminal domain superfamily NJ56_10790 156186a2391eb28ccb427bc3c41f74a6 489 SUPERFAMILY SSF158791 60 169 6.02E-23 T 15-10-2018 NJ56_10790 156186a2391eb28ccb427bc3c41f74a6 489 SUPERFAMILY SSF54631 173 312 1.97E-24 T 15-10-2018 NJ56_10790 156186a2391eb28ccb427bc3c41f74a6 489 Gene3D G3DSA:3.10.580.10 171 297 1.1E-38 T 15-10-2018 NJ56_14945 d58f07cac4f281b80e855ff1c25ec308 251 SMART SM00420 6 58 1.3E-14 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_14945 d58f07cac4f281b80e855ff1c25ec308 251 SUPERFAMILY SSF46785 5 59 1.54E-9 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_14945 d58f07cac4f281b80e855ff1c25ec308 251 Pfam PF00455 DeoR C terminal sensor domain 76 230 6.1E-37 T 15-10-2018 IPR014036 DeoR C-terminal sensor domain NJ56_14945 d58f07cac4f281b80e855ff1c25ec308 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 1.3E-14 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_14945 d58f07cac4f281b80e855ff1c25ec308 251 SUPERFAMILY SSF100950 75 234 7.85E-24 T 15-10-2018 IPR037171 NagB/RpiA transferase-like NJ56_14945 d58f07cac4f281b80e855ff1c25ec308 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 15-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 NJ56_14945 d58f07cac4f281b80e855ff1c25ec308 251 SMART SM01134 74 232 4.3E-36 T 15-10-2018 NJ56_15595 08ee7267a90b51ef1d3e6f360b3f3a13 215 SUPERFAMILY SSF52499 2 211 1.1E-54 T 15-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 NJ56_15595 08ee7267a90b51ef1d3e6f360b3f3a13 215 Gene3D G3DSA:3.40.50.850 1 210 2.1E-64 T 15-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 NJ56_15595 08ee7267a90b51ef1d3e6f360b3f3a13 215 Pfam PF00857 Isochorismatase family 3 206 1.1E-36 T 15-10-2018 IPR000868 Isochorismatase-like GO:0003824 NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 SUPERFAMILY SSF50249 637 721 8.95E-25 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 Gene3D G3DSA:2.40.50.140 630 723 8.3E-29 T 15-10-2018 NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 SMART SM00732 326 423 7.6E-36 T 15-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 Pfam PF09371 Tex-like protein N-terminal domain 9 193 2.1E-69 T 15-10-2018 IPR018974 Tex-like protein, N-terminal NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 Gene3D G3DSA:1.10.10.650 2 109 8.5E-40 T 15-10-2018 IPR023319 Tex-like protein, HTH domain superfamily NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 Pfam PF00575 S1 RNA binding domain 648 719 4.5E-22 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 SUPERFAMILY SSF158832 3 321 6.8E-119 T 15-10-2018 NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 Pfam PF12836 Helix-hairpin-helix motif 490 554 1.3E-28 T 15-10-2018 NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 Gene3D G3DSA:3.30.420.140 325 450 1.2E-152 T 15-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 SUPERFAMILY SSF53098 322 468 6.07E-49 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 SUPERFAMILY SSF47781 469 557 9.0E-29 T 15-10-2018 IPR010994 RuvA domain 2-like NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 Gene3D G3DSA:1.10.3500.10 112 497 1.2E-152 T 15-10-2018 IPR023323 Tex-like domain superfamily NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 Gene3D G3DSA:1.10.150.310 498 629 1.1E-50 T 15-10-2018 NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 Pfam PF16921 Tex protein YqgF-like domain 327 450 4.0E-49 T 15-10-2018 IPR032639 Tex protein, YqgF-like domain NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 SUPERFAMILY SSF47781 559 631 7.34E-20 T 15-10-2018 IPR010994 RuvA domain 2-like NJ56_07000 e0a64f29513ed75c615e11f38b820090 782 SMART SM00316 648 719 1.8E-25 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_16470 e7899326ffc2d85696a96bc4939c62ba 272 Hamap MF_01604 Thiamine kinase [thiK]. 2 267 39.419 T 15-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 NJ56_16470 e7899326ffc2d85696a96bc4939c62ba 272 Gene3D G3DSA:3.90.1200.10 92 267 3.1E-19 T 15-10-2018 NJ56_16470 e7899326ffc2d85696a96bc4939c62ba 272 SUPERFAMILY SSF56112 15 267 1.38E-34 T 15-10-2018 IPR011009 Protein kinase-like domain superfamily NJ56_16470 e7899326ffc2d85696a96bc4939c62ba 272 Pfam PF01636 Phosphotransferase enzyme family 17 219 7.6E-17 T 15-10-2018 IPR002575 Aminoglycoside phosphotransferase NJ56_16470 e7899326ffc2d85696a96bc4939c62ba 272 TIGRFAM TIGR02721 ycfN_thiK: thiamine kinase 11 267 6.0E-93 T 15-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 NJ56_03890 67c41d8c23134321457c0a8a1780b2e4 115 SUPERFAMILY SSF46955 3 67 1.28E-21 T 15-10-2018 IPR009061 Putative DNA-binding domain superfamily NJ56_03890 67c41d8c23134321457c0a8a1780b2e4 115 ProDom PD060594 TRANSCRIPTION YFED YFEC DNA-BINDING REGULATION NEGATIVE REGULATOR STY2653 ECS3274 STY2652 9 114 2.0E-4 T 15-10-2018 IPR010749 Protein of unknown function DUF1323 NJ56_03890 67c41d8c23134321457c0a8a1780b2e4 115 Gene3D G3DSA:1.10.10.10 2 73 3.2E-25 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_03890 67c41d8c23134321457c0a8a1780b2e4 115 Pfam PF02316 Mu DNA-binding domain 9 55 2.6E-13 T 15-10-2018 IPR003314 Mu-type HTH domain GO:0003677 NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 Pfam PF00158 Sigma-54 interaction domain 9 170 4.4E-60 T 15-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 308 328 1.7E-7 T 15-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 291 308 1.7E-7 T 15-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 SMART SM00382 28 171 1.3E-10 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 Gene3D G3DSA:1.10.10.60 264 329 6.3E-9 T 15-10-2018 NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 SUPERFAMILY SSF46689 222 327 1.48E-8 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 222 231 - T 15-10-2018 IPR025944 Sigma-54 interaction domain, conserved site NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 8 325 2.1E-164 T 15-10-2018 IPR014317 Transcription activator PspF NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 Gene3D G3DSA:1.10.8.60 180 263 9.7E-28 T 15-10-2018 NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 94 109 - T 15-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 SUPERFAMILY SSF52540 8 248 2.79E-64 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 Pfam PF02954 Bacterial regulatory protein, Fis family 287 324 8.9E-8 T 15-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NJ56_14710 67c8b82adeb4f998c2236a3d990b1aa7 335 Gene3D G3DSA:3.40.50.300 1 179 2.3E-57 T 15-10-2018 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 351 423 3.1E-24 T 15-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 1.5E-18 T 15-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 SMART SM00941 350 424 2.3E-32 T 15-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 Hamap MF_01628 Thymidine phosphorylase [deoA]. 2 438 46.903 T 15-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 SUPERFAMILY SSF47648 3 70 1.96E-21 T 15-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 15-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 Gene3D G3DSA:3.40.1030.10 70 322 3.9E-128 T 15-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 PIRSF PIRSF000478 1 439 6.2E-151 T 15-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 Gene3D G3DSA:1.20.970.10 7 195 3.9E-128 T 15-10-2018 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 Pfam PF00591 Glycosyl transferase family, a/b domain 79 309 4.2E-51 T 15-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 SUPERFAMILY SSF52418 75 334 1.7E-86 T 15-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 2.8E-164 T 15-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 2 438 1.3E-228 T 15-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 SUPERFAMILY SSF54680 337 438 1.29E-32 T 15-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03140 528642c2cabfb489dc3e9b5c101137fa 440 Gene3D G3DSA:3.90.1170.30 337 433 5.4E-33 T 15-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_15325 3c7d8306907aeb2f8e86ee1580caad9a 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 9.7E-105 T 15-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 NJ56_15325 3c7d8306907aeb2f8e86ee1580caad9a 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 15-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 NJ56_15325 3c7d8306907aeb2f8e86ee1580caad9a 268 SUPERFAMILY SSF51366 1 266 4.62E-91 T 15-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 NJ56_15325 3c7d8306907aeb2f8e86ee1580caad9a 268 Gene3D G3DSA:3.20.20.70 1 268 7.6E-100 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_15325 3c7d8306907aeb2f8e86ee1580caad9a 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 4.6E-97 T 15-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 NJ56_15325 3c7d8306907aeb2f8e86ee1580caad9a 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 38.063 T 15-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 NJ56_08335 6ce42ea8a9fd2a6864cbb53941499c36 295 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 13 234 38.319 T 15-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 NJ56_08335 6ce42ea8a9fd2a6864cbb53941499c36 295 Gene3D G3DSA:3.30.950.10 121 241 2.8E-41 T 15-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 NJ56_08335 6ce42ea8a9fd2a6864cbb53941499c36 295 SUPERFAMILY SSF53790 13 232 9.42E-84 T 15-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 NJ56_08335 6ce42ea8a9fd2a6864cbb53941499c36 295 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 283 5.6E-110 T 15-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 NJ56_08335 6ce42ea8a9fd2a6864cbb53941499c36 295 Gene3D G3DSA:3.40.1010.10 2 120 2.6E-47 T 15-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 NJ56_08335 6ce42ea8a9fd2a6864cbb53941499c36 295 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 91 102 - T 15-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 NJ56_08335 6ce42ea8a9fd2a6864cbb53941499c36 295 PIRSF PIRSF005917 2 288 1.3E-106 T 15-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 NJ56_08335 6ce42ea8a9fd2a6864cbb53941499c36 295 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 13 213 9.6E-27 T 15-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 NJ56_17515 971a5184fe383cdfdc3a4debbec87591 769 PIRSF PIRSF009393 6 769 3.4E-280 T 15-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 NJ56_17515 971a5184fe383cdfdc3a4debbec87591 769 Gene3D G3DSA:3.90.100.10 644 768 1.3E-39 T 15-10-2018 NJ56_17515 971a5184fe383cdfdc3a4debbec87591 769 SUPERFAMILY SSF53383 150 621 1.66E-102 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_17515 971a5184fe383cdfdc3a4debbec87591 769 Gene3D G3DSA:3.40.50.2300 10 149 1.3E-48 T 15-10-2018 NJ56_17515 971a5184fe383cdfdc3a4debbec87591 769 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 150 603 1.1E-160 T 15-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 NJ56_17515 971a5184fe383cdfdc3a4debbec87591 769 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 394 408 - T 15-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 NJ56_17515 971a5184fe383cdfdc3a4debbec87591 769 Gene3D G3DSA:3.40.640.10 150 453 1.8E-89 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_17515 971a5184fe383cdfdc3a4debbec87591 769 Gene3D G3DSA:3.90.1150.10 454 643 2.2E-75 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_17515 971a5184fe383cdfdc3a4debbec87591 769 SUPERFAMILY SSF55904 623 764 2.48E-35 T 15-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 NJ56_17515 971a5184fe383cdfdc3a4debbec87591 769 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 628 757 4.3E-43 T 15-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 NJ56_17515 971a5184fe383cdfdc3a4debbec87591 769 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 26 144 2.0E-24 T 15-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 NJ56_14395 74934327b48b0b1c5dbce057e4fc9f71 352 Pfam PF05171 Haemin-degrading HemS.ChuX domain 206 345 2.4E-38 T 15-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 NJ56_14395 74934327b48b0b1c5dbce057e4fc9f71 352 Pfam PF05171 Haemin-degrading HemS.ChuX domain 30 157 3.8E-39 T 15-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 NJ56_14395 74934327b48b0b1c5dbce057e4fc9f71 352 Gene3D G3DSA:3.40.1570.10 14 288 3.1E-129 T 15-10-2018 NJ56_14395 74934327b48b0b1c5dbce057e4fc9f71 352 SUPERFAMILY SSF144064 6 345 4.81E-125 T 15-10-2018 NJ56_14395 74934327b48b0b1c5dbce057e4fc9f71 352 Gene3D G3DSA:3.40.1570.10 82 339 3.1E-129 T 15-10-2018 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 843 1.3E-298 T 15-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 929 21.405 T 15-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 640 1.5E-224 T 15-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 15-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 SUPERFAMILY SSF47323 652 930 2.99E-77 T 15-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 Pfam PF06827 Zinc finger found in FPG and IleRS 898 926 4.9E-9 T 15-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 SUPERFAMILY SSF50677 204 403 4.19E-53 T 15-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 Gene3D G3DSA:1.10.730.20 640 931 1.2E-92 T 15-10-2018 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 Gene3D G3DSA:3.40.50.620 25 629 1.1E-231 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 401 416 1.2E-32 T 15-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 526 539 1.2E-32 T 15-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 238 261 1.2E-32 T 15-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 1.2E-32 T 15-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 561 570 1.2E-32 T 15-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 Gene3D G3DSA:3.90.740.10 195 408 1.1E-231 T 15-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 SUPERFAMILY SSF52374 3 647 4.79E-136 T 15-10-2018 NJ56_02965 965ffaf67505b5287fa3765bd83c9d71 938 Pfam PF08264 Anticodon-binding domain of tRNA 685 841 2.5E-30 T 15-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Gene3D G3DSA:1.10.287.610 1 69 3.1E-31 T 15-10-2018 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 SMART SM00278 512 531 460.0 T 15-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 SMART SM00278 544 563 12.0 T 15-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 SMART SM00278 480 499 5.1 T 15-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 SMART SM00278 446 465 17.0 T 15-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Gene3D G3DSA:1.10.150.20 432 505 1.6E-29 T 15-10-2018 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Gene3D G3DSA:1.10.150.20 506 584 3.4E-29 T 15-10-2018 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Pfam PF14520 Helix-hairpin-helix domain 446 502 5.3E-5 T 15-10-2018 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 318 2.2E-137 T 15-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 SMART SM00292 594 671 1.0E-15 T 15-10-2018 IPR001357 BRCT domain NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 SUPERFAMILY SSF52113 595 669 3.55E-19 T 15-10-2018 IPR036420 BRCT domain superfamily NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Gene3D G3DSA:3.30.1490.70 78 316 2.0E-102 T 15-10-2018 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 SUPERFAMILY SSF56091 2 316 1.58E-123 T 15-10-2018 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Gene3D G3DSA:2.20.70.80 391 431 3.1E-21 T 15-10-2018 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Gene3D G3DSA:3.40.50.10190 585 670 1.8E-26 T 15-10-2018 IPR036420 BRCT domain superfamily NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 15-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 PIRSF PIRSF001604 1 673 6.4E-257 T 15-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Hamap MF_01588 DNA ligase [ligA]. 2 668 54.408 T 15-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 664 3.1E-269 T 15-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 SUPERFAMILY SSF47781 403 578 3.52E-60 T 15-10-2018 IPR010994 RuvA domain 2-like NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 15-10-2018 IPR018239 NAD-dependent DNA ligase, active site NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Gene3D G3DSA:2.40.50.140 317 390 1.0E-34 T 15-10-2018 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Pfam PF12826 Helix-hairpin-helix motif 510 573 2.5E-23 T 15-10-2018 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 595 667 1.8E-12 T 15-10-2018 IPR001357 BRCT domain NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 SMART SM00532 3 448 1.5E-283 T 15-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Gene3D G3DSA:3.30.470.30 70 253 2.0E-102 T 15-10-2018 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 322 398 2.9E-36 T 15-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 SUPERFAMILY SSF50249 318 400 2.23E-29 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_11170 de3f979977975c0f034fd7e699bbde71 674 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 407 434 6.2E-11 T 15-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 SMART SM00304 310 362 1.6E-5 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 SUPERFAMILY SSF58104 330 611 1.27E-75 T 15-10-2018 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 Gene3D G3DSA:1.10.287.950 309 612 1.3E-93 T 15-10-2018 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 Gene3D G3DSA:1.20.1440.210 57 265 2.3E-8 T 15-10-2018 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 SMART SM01358 39 288 8.8E-41 T 15-10-2018 IPR032255 Helical bimodular sensor domain NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 422 577 2.2E-56 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 Pfam PF00672 HAMP domain 310 358 4.0E-6 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 Pfam PF16591 Helical bimodular sensor domain 57 279 1.1E-14 T 15-10-2018 IPR032255 Helical bimodular sensor domain NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 SMART SM00283 363 610 2.1E-91 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 Gene3D G3DSA:1.20.1440.210 135 245 2.3E-8 T 15-10-2018 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 144 159 4.4E-60 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 384 413 4.4E-60 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 461 488 4.4E-60 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 490 519 4.4E-60 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_06540 3100a85d075a16b971a6e3c0e1d01386 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 538 567 4.4E-60 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_14905 cfde3b2fc5382c1b2992baf2185d6cf0 317 SUPERFAMILY SSF159871 241 317 1.96E-19 T 15-10-2018 IPR036275 YdgH-like superfamily NJ56_14905 cfde3b2fc5382c1b2992baf2185d6cf0 317 Gene3D G3DSA:3.30.1660.10 245 317 2.4E-30 T 15-10-2018 IPR025543 Dodecin-like NJ56_14905 cfde3b2fc5382c1b2992baf2185d6cf0 317 Gene3D G3DSA:3.30.1660.10 107 176 8.4E-22 T 15-10-2018 IPR025543 Dodecin-like NJ56_14905 cfde3b2fc5382c1b2992baf2185d6cf0 317 SUPERFAMILY SSF159871 108 180 1.16E-16 T 15-10-2018 IPR036275 YdgH-like superfamily NJ56_14905 cfde3b2fc5382c1b2992baf2185d6cf0 317 Pfam PF07338 Protein of unknown function (DUF1471) 261 317 3.1E-21 T 15-10-2018 IPR010854 Domain of unknown function DUF1471 NJ56_14905 cfde3b2fc5382c1b2992baf2185d6cf0 317 Pfam PF07338 Protein of unknown function (DUF1471) 120 176 1.3E-17 T 15-10-2018 IPR010854 Domain of unknown function DUF1471 NJ56_14905 cfde3b2fc5382c1b2992baf2185d6cf0 317 Pfam PF07338 Protein of unknown function (DUF1471) 36 91 4.0E-19 T 15-10-2018 IPR010854 Domain of unknown function DUF1471 NJ56_14905 cfde3b2fc5382c1b2992baf2185d6cf0 317 SUPERFAMILY SSF159871 3 94 2.75E-21 T 15-10-2018 IPR036275 YdgH-like superfamily NJ56_14905 cfde3b2fc5382c1b2992baf2185d6cf0 317 PIRSF PIRSF014774 1 317 1.4E-179 T 15-10-2018 IPR025539 YdgH protein NJ56_14905 cfde3b2fc5382c1b2992baf2185d6cf0 317 Gene3D G3DSA:3.30.1660.10 22 91 2.4E-24 T 15-10-2018 IPR025543 Dodecin-like NJ56_05180 61b3201b6379f215d836056ac253b6c9 451 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 15-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 NJ56_05180 61b3201b6379f215d836056ac253b6c9 451 SUPERFAMILY SSF103473 15 441 1.96E-83 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_05180 61b3201b6379f215d836056ac253b6c9 451 Pfam PF07690 Major Facilitator Superfamily 34 400 4.4E-44 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_05180 61b3201b6379f215d836056ac253b6c9 451 PIRSF PIRSF002808 5 451 1.3E-171 T 15-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 NJ56_05180 61b3201b6379f215d836056ac253b6c9 451 Gene3D G3DSA:1.20.1250.20 18 226 1.9E-58 T 15-10-2018 NJ56_05180 61b3201b6379f215d836056ac253b6c9 451 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 440 2.0E-260 T 15-10-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 NJ56_05180 61b3201b6379f215d836056ac253b6c9 451 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 9.6E-165 T 15-10-2018 NJ56_05180 61b3201b6379f215d836056ac253b6c9 451 Gene3D G3DSA:1.20.1250.20 240 450 9.1E-63 T 15-10-2018 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 314 336 - T 15-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 SMART SM00283 289 536 4.0E-90 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 SUPERFAMILY SSF58104 256 537 9.55E-70 T 15-10-2018 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 416 445 1.1E-62 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 310 339 1.1E-62 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 387 414 1.1E-62 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 81 96 1.1E-62 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 26 51 1.1E-62 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 464 493 1.1E-62 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 SMART SM00304 236 288 1.3E-10 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 Pfam PF02203 Tar ligand binding domain homologue 23 185 1.6E-27 T 15-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 SUPERFAMILY SSF47170 49 194 5.23E-13 T 15-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 347 504 1.4E-54 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 Pfam PF00672 HAMP domain 236 283 1.5E-8 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_12750 77ce9b8d155c4deecaca8dfa7fc12d90 574 Gene3D G3DSA:1.10.287.950 236 538 7.6E-90 T 15-10-2018 NJ56_09115 ecfa2467f3eb9f9ecbc6e903ac12fdf6 341 Gene3D G3DSA:3.40.50.300 102 340 6.3E-87 T 15-10-2018 NJ56_09115 ecfa2467f3eb9f9ecbc6e903ac12fdf6 341 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 194 208 - T 15-10-2018 IPR001482 Type II/IV secretion system protein NJ56_09115 ecfa2467f3eb9f9ecbc6e903ac12fdf6 341 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 333 1.1E-126 T 15-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 NJ56_09115 ecfa2467f3eb9f9ecbc6e903ac12fdf6 341 SUPERFAMILY SSF52540 4 333 5.33E-56 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09115 ecfa2467f3eb9f9ecbc6e903ac12fdf6 341 Gene3D G3DSA:3.30.450.90 1 100 3.8E-22 T 15-10-2018 NJ56_09115 ecfa2467f3eb9f9ecbc6e903ac12fdf6 341 Pfam PF00437 Type II/IV secretion system protein 123 272 4.9E-39 T 15-10-2018 IPR001482 Type II/IV secretion system protein NJ56_05785 7018f5947e54337c000456247d4dca29 300 SUPERFAMILY SSF161111 9 207 1.44E-49 T 15-10-2018 IPR027469 Cation efflux transmembrane domain superfamily NJ56_05785 7018f5947e54337c000456247d4dca29 300 Gene3D G3DSA:3.30.70.1350 207 290 8.1E-34 T 15-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 NJ56_05785 7018f5947e54337c000456247d4dca29 300 SUPERFAMILY SSF160240 209 288 1.31E-25 T 15-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 NJ56_05785 7018f5947e54337c000456247d4dca29 300 Gene3D G3DSA:1.20.1510.10 8 206 1.4E-65 T 15-10-2018 IPR027469 Cation efflux transmembrane domain superfamily NJ56_05785 7018f5947e54337c000456247d4dca29 300 Hamap MF_01425 Ferrous-iron efflux pump FieF [fieF]. 1 300 61.423 T 15-10-2018 IPR023783 Cation efflux pump FieF GO:0006829|GO:0015684|GO:0016021|GO:0046873 NJ56_05785 7018f5947e54337c000456247d4dca29 300 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 287 1.6E-25 T 15-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain NJ56_05785 7018f5947e54337c000456247d4dca29 300 Pfam PF01545 Cation efflux family 16 206 2.2E-43 T 15-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 NJ56_05785 7018f5947e54337c000456247d4dca29 300 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 11 288 5.6E-74 T 15-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 NJ56_06180 83213c0d479897d51ab6f7bddbd5e0a0 622 Pfam PF02705 K+ potassium transporter 14 544 6.4E-209 T 15-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 NJ56_06180 83213c0d479897d51ab6f7bddbd5e0a0 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.69 T 15-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup NJ56_06180 83213c0d479897d51ab6f7bddbd5e0a0 622 TIGRFAM TIGR00794 kup: potassium uptake protein 97 549 1.0E-184 T 15-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 217 426 7.8E-50 T 15-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 SUPERFAMILY SSF75615 114 209 4.32E-28 T 15-10-2018 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 Pfam PF13241 Putative NAD(P)-binding 6 115 1.1E-29 T 15-10-2018 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 Gene3D G3DSA:3.30.950.10 331 468 8.5E-46 T 15-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 1.4E-21 T 15-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 SUPERFAMILY SSF53790 213 455 3.93E-81 T 15-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 215 448 1.0E-92 T 15-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 Gene3D G3DSA:1.10.8.210 149 212 4.9E-17 T 15-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 9.6E-8 T 15-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 SUPERFAMILY SSF51735 2 113 7.88E-26 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 52.551 T 15-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 Gene3D G3DSA:3.30.160.110 113 148 6.7E-19 T 15-10-2018 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 1.8E-80 T 15-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 295 328 - T 15-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 220 234 - T 15-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 PIRSF PIRSF036426 1 465 4.6E-204 T 15-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 Gene3D G3DSA:3.40.1010.10 214 330 1.6E-45 T 15-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 NJ56_02345 fc4ef3783cc4cac96a6fea6ce86722d1 472 Gene3D G3DSA:3.40.50.720 1 112 3.4E-33 T 15-10-2018 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 Gene3D G3DSA:3.30.420.110 130 265 3.8E-39 T 15-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 Gene3D G3DSA:1.10.1420.10 269 559 4.1E-106 T 15-10-2018 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 SUPERFAMILY SSF52540 567 798 2.66E-62 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 Gene3D G3DSA:1.10.1420.10 387 503 4.1E-106 T 15-10-2018 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 10 843 25.401 T 15-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 Gene3D G3DSA:3.40.50.300 570 840 2.2E-101 T 15-10-2018 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 688 704 - T 15-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 SMART SM00533 286 591 9.3E-105 T 15-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 SUPERFAMILY SSF48334 270 566 2.35E-90 T 15-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 Pfam PF05192 MutS domain III 272 559 1.5E-40 T 15-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 SMART SM00534 607 794 2.3E-123 T 15-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 Gene3D G3DSA:3.40.1170.10 2 124 7.9E-52 T 15-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 Pfam PF05188 MutS domain II 131 256 6.1E-33 T 15-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 Pfam PF01624 MutS domain I 11 122 5.2E-41 T 15-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 PIRSF PIRSF037677 3 189 5.6E-27 T 15-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 PIRSF PIRSF037677 203 831 2.7E-126 T 15-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 Pfam PF00488 MutS domain V 610 797 1.1E-88 T 15-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 SUPERFAMILY SSF55271 6 116 2.49E-42 T 15-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 Pfam PF05190 MutS family domain IV 428 517 7.0E-28 T 15-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 SUPERFAMILY SSF53150 117 269 2.35E-42 T 15-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 NJ56_02280 8a70595ce9a4fbf6f566ec6160de44d6 851 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 10 848 0.0 T 15-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 NJ56_11290 8ffb30a88b44a09fd671758ec88c1dee 409 Gene3D G3DSA:3.40.640.10 70 293 6.6E-133 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_11290 8ffb30a88b44a09fd671758ec88c1dee 409 Pfam PF00155 Aminotransferase class I and II 37 386 1.6E-57 T 15-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NJ56_11290 8ffb30a88b44a09fd671758ec88c1dee 409 SUPERFAMILY SSF53383 9 394 5.05E-106 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_11290 8ffb30a88b44a09fd671758ec88c1dee 409 Gene3D G3DSA:3.90.1150.10 294 391 6.6E-133 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_15685 6946b22ea52c256bfcb03ff94a8c07b9 434 Gene3D G3DSA:3.50.50.60 1 84 3.4E-13 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_15685 6946b22ea52c256bfcb03ff94a8c07b9 434 Gene3D G3DSA:3.30.9.10 134 361 2.6E-51 T 15-10-2018 NJ56_15685 6946b22ea52c256bfcb03ff94a8c07b9 434 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 410 52.378 T 15-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 NJ56_15685 6946b22ea52c256bfcb03ff94a8c07b9 434 SUPERFAMILY SSF54373 269 359 3.92E-18 T 15-10-2018 NJ56_15685 6946b22ea52c256bfcb03ff94a8c07b9 434 Pfam PF01266 FAD dependent oxidoreductase 3 397 3.2E-74 T 15-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 NJ56_15685 6946b22ea52c256bfcb03ff94a8c07b9 434 Gene3D G3DSA:3.50.50.60 105 403 2.6E-51 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_15685 6946b22ea52c256bfcb03ff94a8c07b9 434 SUPERFAMILY SSF51905 1 419 3.88E-54 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_12340 dd81c210429065e4d23c4e7c926b8408 281 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 15-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 NJ56_12340 dd81c210429065e4d23c4e7c926b8408 281 Gene3D G3DSA:3.20.20.150 1 280 1.5E-110 T 15-10-2018 NJ56_12340 dd81c210429065e4d23c4e7c926b8408 281 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 276 2.4E-108 T 15-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 NJ56_12340 dd81c210429065e4d23c4e7c926b8408 281 SMART SM00518 3 279 7.9E-129 T 15-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 NJ56_12340 dd81c210429065e4d23c4e7c926b8408 281 Pfam PF01261 Xylose isomerase-like TIM barrel 20 239 3.8E-42 T 15-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain NJ56_12340 dd81c210429065e4d23c4e7c926b8408 281 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 15-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 NJ56_12340 dd81c210429065e4d23c4e7c926b8408 281 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 15-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 NJ56_12340 dd81c210429065e4d23c4e7c926b8408 281 SUPERFAMILY SSF51658 1 279 8.25E-101 T 15-10-2018 IPR036237 Xylose isomerase-like superfamily NJ56_12340 dd81c210429065e4d23c4e7c926b8408 281 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 43.357 T 15-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 NJ56_10770 369b07f17357233dbcad452755095f4e 845 Pfam PF13953 PapC C-terminal domain 760 828 1.5E-27 T 15-10-2018 IPR025949 PapC-like, C-terminal domain NJ56_10770 369b07f17357233dbcad452755095f4e 845 Gene3D G3DSA:2.60.40.3110 271 360 1.5E-36 T 15-10-2018 NJ56_10770 369b07f17357233dbcad452755095f4e 845 Gene3D G3DSA:2.60.40.2610 667 756 1.7E-33 T 15-10-2018 NJ56_10770 369b07f17357233dbcad452755095f4e 845 Gene3D G3DSA:3.10.20.410 57 174 3.3E-35 T 15-10-2018 NJ56_10770 369b07f17357233dbcad452755095f4e 845 Pfam PF13954 PapC N-terminal domain 40 186 5.0E-45 T 15-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 NJ56_10770 369b07f17357233dbcad452755095f4e 845 SUPERFAMILY SSF141729 65 177 2.88E-31 T 15-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 NJ56_10770 369b07f17357233dbcad452755095f4e 845 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 313 323 - T 15-10-2018 IPR018030 Fimbrial membrane usher, conserved site NJ56_10770 369b07f17357233dbcad452755095f4e 845 Pfam PF00577 Outer membrane usher protein 202 751 2.0E-195 T 15-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 NJ56_10770 369b07f17357233dbcad452755095f4e 845 Gene3D G3DSA:2.60.40.2070 757 845 3.5E-30 T 15-10-2018 NJ56_10910 65dc49d86f6c659570683e8db7a2c980 691 Gene3D G3DSA:1.20.120.890 554 690 5.1E-51 T 15-10-2018 IPR038321 TmcA, C-terminal domain superfamily NJ56_10910 65dc49d86f6c659570683e8db7a2c980 691 Pfam PF05127 Helicase 238 346 4.2E-31 T 15-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 NJ56_10910 65dc49d86f6c659570683e8db7a2c980 691 Pfam PF17176 tRNA-binding domain 562 676 5.3E-43 T 15-10-2018 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain NJ56_10910 65dc49d86f6c659570683e8db7a2c980 691 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 22 674 47.761 T 15-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 NJ56_10910 65dc49d86f6c659570683e8db7a2c980 691 Pfam PF13718 GNAT acetyltransferase 2 502 553 4.4E-7 T 15-10-2018 IPR000182 GNAT domain NJ56_10910 65dc49d86f6c659570683e8db7a2c980 691 Pfam PF13718 GNAT acetyltransferase 2 379 499 4.8E-11 T 15-10-2018 IPR000182 GNAT domain NJ56_10910 65dc49d86f6c659570683e8db7a2c980 691 SUPERFAMILY SSF55729 357 535 2.52E-12 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_10910 65dc49d86f6c659570683e8db7a2c980 691 Gene3D G3DSA:3.40.630.30 338 553 2.4E-69 T 15-10-2018 NJ56_10910 65dc49d86f6c659570683e8db7a2c980 691 Gene3D G3DSA:3.40.50.12320 196 336 1.4E-45 T 15-10-2018 NJ56_10910 65dc49d86f6c659570683e8db7a2c980 691 SUPERFAMILY SSF52540 176 294 3.2E-12 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_10910 65dc49d86f6c659570683e8db7a2c980 691 Gene3D G3DSA:3.40.50.11040 6 194 1.9E-59 T 15-10-2018 NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 PIRSF PIRSF006107 1 714 0.0 T 15-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 Pfam PF13500 AAA domain 3 229 3.3E-51 T 15-10-2018 NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 Gene3D G3DSA:3.40.1390.20 225 365 2.6E-14 T 15-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 706 7.5E-127 T 15-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 706 2.5E-135 T 15-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 SUPERFAMILY SSF52540 3 240 8.5E-27 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 Gene3D G3DSA:3.40.50.10950 398 708 4.5E-135 T 15-10-2018 NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 SUPERFAMILY SSF53659 392 709 1.32E-93 T 15-10-2018 NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 Gene3D G3DSA:3.40.50.10750 529 682 4.5E-135 T 15-10-2018 NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 SUPERFAMILY SSF75138 229 353 4.32E-25 T 15-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 Pfam PF07085 DRTGG domain 233 344 2.8E-28 T 15-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 NJ56_11620 cb7018be0db48a7baf94af4674f2c386 715 Gene3D G3DSA:3.40.50.300 1 210 5.7E-12 T 15-10-2018 NJ56_06790 76f96c3fd90e7386026aeaab2a99d52f 413 Pfam PF00375 Sodium:dicarboxylate symporter family 14 392 4.2E-78 T 15-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 NJ56_06790 76f96c3fd90e7386026aeaab2a99d52f 413 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 1.4E-8 T 15-10-2018 NJ56_06790 76f96c3fd90e7386026aeaab2a99d52f 413 PRINTS PR00173 Glutamate-aspartate symporter signature 347 367 1.4E-8 T 15-10-2018 NJ56_06790 76f96c3fd90e7386026aeaab2a99d52f 413 PRINTS PR00173 Glutamate-aspartate symporter signature 183 202 1.4E-8 T 15-10-2018 NJ56_06790 76f96c3fd90e7386026aeaab2a99d52f 413 PRINTS PR00173 Glutamate-aspartate symporter signature 285 311 1.4E-8 T 15-10-2018 NJ56_06790 76f96c3fd90e7386026aeaab2a99d52f 413 Gene3D G3DSA:1.10.3860.10 1 399 1.1E-77 T 15-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 NJ56_06790 76f96c3fd90e7386026aeaab2a99d52f 413 SUPERFAMILY SSF118215 13 393 8.24E-77 T 15-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 NJ56_13155 84904921e1d16430e6e807c192b946ed 494 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 15-10-2018 IPR018212 Sodium/solute symporter, conserved site NJ56_13155 84904921e1d16430e6e807c192b946ed 494 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 15-10-2018 IPR018212 Sodium/solute symporter, conserved site NJ56_13155 84904921e1d16430e6e807c192b946ed 494 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 490 1.3E-223 T 15-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 NJ56_13155 84904921e1d16430e6e807c192b946ed 494 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 3.2E-124 T 15-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 NJ56_13155 84904921e1d16430e6e807c192b946ed 494 Pfam PF00474 Sodium:solute symporter family 35 437 1.5E-138 T 15-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 NJ56_13155 84904921e1d16430e6e807c192b946ed 494 Gene3D G3DSA:1.20.1730.10 23 493 5.2E-92 T 15-10-2018 IPR038377 Sodium/glucose symporter superfamily NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 Pfam PF02954 Bacterial regulatory protein, Fis family 367 406 1.1E-6 T 15-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 SMART SM00448 6 117 3.9E-26 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 Gene3D G3DSA:1.10.10.60 351 413 1.2E-10 T 15-10-2018 NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 Pfam PF14532 Sigma-54 interaction domain 143 280 2.2E-21 T 15-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 Gene3D G3DSA:1.10.8.60 285 350 7.9E-14 T 15-10-2018 NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 SUPERFAMILY SSF46689 353 409 3.3E-10 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 Gene3D G3DSA:3.40.50.2300 1 133 7.7E-36 T 15-10-2018 NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 325 334 - T 15-10-2018 IPR025944 Sigma-54 interaction domain, conserved site NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 Pfam PF00072 Response regulator receiver domain 8 117 4.3E-25 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 SUPERFAMILY SSF52540 142 341 7.28E-29 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 Gene3D G3DSA:3.40.50.300 141 284 8.1E-29 T 15-10-2018 NJ56_01475 17f66d682c388f0b2f63c7ae10513a50 415 SUPERFAMILY SSF52172 6 187 3.98E-36 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_16840 75febf0a7242de6f2238100d7fdcb19c 620 Gene3D G3DSA:1.10.101.10 297 351 8.4E-11 T 15-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 NJ56_16840 75febf0a7242de6f2238100d7fdcb19c 620 Pfam PF03734 L,D-transpeptidase catalytic domain 381 547 1.2E-28 T 15-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 NJ56_16840 75febf0a7242de6f2238100d7fdcb19c 620 SUPERFAMILY SSF141523 379 538 3.79E-18 T 15-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like NJ56_16840 75febf0a7242de6f2238100d7fdcb19c 620 SUPERFAMILY SSF47090 316 360 2.2E-11 T 15-10-2018 IPR036365 PGBD-like superfamily NJ56_16840 75febf0a7242de6f2238100d7fdcb19c 620 Pfam PF01471 Putative peptidoglycan binding domain 317 352 5.8E-9 T 15-10-2018 IPR002477 Peptidoglycan binding-like NJ56_10510 3f20f116a0cb5ff0915d827fe76868a9 221 Pfam PF06226 Protein of unknown function (DUF1007) 18 220 3.7E-62 T 15-10-2018 IPR010412 Protein of unknown function DUF1007 NJ56_10510 3f20f116a0cb5ff0915d827fe76868a9 221 PIRSF PIRSF008159 7 221 7.8E-73 T 15-10-2018 IPR016537 Uncharacterised conserved protein UCP008159, NJ56_03705 5c4f0ebb80f21c6bc414c6d69a66e290 438 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 429 7.9E-142 T 15-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 NJ56_03705 5c4f0ebb80f21c6bc414c6d69a66e290 438 PIRSF PIRSF006060 1 438 4.0E-49 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_03705 5c4f0ebb80f21c6bc414c6d69a66e290 438 Hamap MF_02073 Putrescine transporter PotE [potE]. 8 435 36.299 T 15-10-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 NJ56_03705 5c4f0ebb80f21c6bc414c6d69a66e290 438 Pfam PF13520 Amino acid permease 9 403 6.8E-45 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_03705 5c4f0ebb80f21c6bc414c6d69a66e290 438 Gene3D G3DSA:1.20.1740.10 1 436 3.0E-57 T 15-10-2018 NJ56_03705 5c4f0ebb80f21c6bc414c6d69a66e290 438 TIGRFAM TIGR04299 antiport_PotE: putrescine-ornithine antiporter 5 431 1.9E-239 T 15-10-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 NJ56_06675 40ce80a668c5bfcf445e0ebb65419797 536 Gene3D G3DSA:3.40.190.10 211 523 1.5E-194 T 15-10-2018 NJ56_06675 40ce80a668c5bfcf445e0ebb65419797 536 SUPERFAMILY SSF53850 29 532 9.59E-161 T 15-10-2018 NJ56_06675 40ce80a668c5bfcf445e0ebb65419797 536 PIRSF PIRSF002741 22 536 7.5E-119 T 15-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 NJ56_06675 40ce80a668c5bfcf445e0ebb65419797 536 Gene3D G3DSA:3.90.76.10 50 210 1.5E-194 T 15-10-2018 NJ56_06675 40ce80a668c5bfcf445e0ebb65419797 536 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 79 101 - T 15-10-2018 IPR023765 Solute-binding protein family 5, conserved site NJ56_06675 40ce80a668c5bfcf445e0ebb65419797 536 Gene3D G3DSA:3.10.105.10 292 510 1.5E-194 T 15-10-2018 NJ56_06675 40ce80a668c5bfcf445e0ebb65419797 536 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 453 1.2E-105 T 15-10-2018 IPR000914 Solute-binding protein family 5 domain NJ56_01510 6c330f7535b39ddaf2ba462dc9692046 138 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 6 131 5.1E-46 T 15-10-2018 IPR011605 NusB antitermination factor GO:0006353 NJ56_01510 6c330f7535b39ddaf2ba462dc9692046 138 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 4 135 23.44 T 15-10-2018 IPR011605 NusB antitermination factor GO:0006353 NJ56_01510 6c330f7535b39ddaf2ba462dc9692046 138 Pfam PF01029 NusB family 7 131 1.9E-35 T 15-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 NJ56_01510 6c330f7535b39ddaf2ba462dc9692046 138 Gene3D G3DSA:1.10.940.10 1 138 4.9E-53 T 15-10-2018 IPR035926 NusB-like superfamily NJ56_01510 6c330f7535b39ddaf2ba462dc9692046 138 SUPERFAMILY SSF48013 3 132 1.7E-42 T 15-10-2018 IPR035926 NusB-like superfamily NJ56_02970 b972d28c40e8f3c22803b67e50a69907 312 Gene3D G3DSA:2.40.30.30 188 310 7.5E-39 T 15-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 NJ56_02970 b972d28c40e8f3c22803b67e50a69907 312 PIRSF PIRSF004491 1 310 1.7E-102 T 15-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 NJ56_02970 b972d28c40e8f3c22803b67e50a69907 312 SMART SM00904 183 307 2.3E-63 T 15-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 NJ56_02970 b972d28c40e8f3c22803b67e50a69907 312 Pfam PF01687 Riboflavin kinase 184 306 2.8E-38 T 15-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 NJ56_02970 b972d28c40e8f3c22803b67e50a69907 312 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 18 49 2.7E-7 T 15-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NJ56_02970 b972d28c40e8f3c22803b67e50a69907 312 SUPERFAMILY SSF52374 15 175 2.22E-35 T 15-10-2018 NJ56_02970 b972d28c40e8f3c22803b67e50a69907 312 Pfam PF06574 FAD synthetase 12 167 3.0E-55 T 15-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 NJ56_02970 b972d28c40e8f3c22803b67e50a69907 312 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 306 1.4E-113 T 15-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 NJ56_02970 b972d28c40e8f3c22803b67e50a69907 312 Gene3D G3DSA:3.40.50.620 1 186 1.5E-58 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_02970 b972d28c40e8f3c22803b67e50a69907 312 SUPERFAMILY SSF82114 174 307 3.49E-44 T 15-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 NJ56_06300 247e3f6c0aa48cd575a1df10001627c2 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 289 4.5E-30 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_06300 247e3f6c0aa48cd575a1df10001627c2 295 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 28 293 8.0E-86 T 15-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 NJ56_06300 247e3f6c0aa48cd575a1df10001627c2 295 Gene3D G3DSA:1.10.3720.10 14 287 1.2E-29 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_06300 247e3f6c0aa48cd575a1df10001627c2 295 SUPERFAMILY SSF161098 31 285 1.5E-34 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_12080 28c979c9fda312605600b7028fd06ef7 408 Pfam PF05065 Phage capsid family 124 401 2.6E-65 T 15-10-2018 IPR024455 Phage capsid NJ56_12080 28c979c9fda312605600b7028fd06ef7 408 SUPERFAMILY SSF56563 119 403 3.53E-57 T 15-10-2018 NJ56_12080 28c979c9fda312605600b7028fd06ef7 408 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 4 401 3.9E-96 T 15-10-2018 IPR024455 Phage capsid NJ56_07850 b706a9ea0bfe2ee1bb9b752fc92c1749 343 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 21 336 2.6E-164 T 15-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 NJ56_07850 b706a9ea0bfe2ee1bb9b752fc92c1749 343 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 102 120 - T 15-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 NJ56_07850 b706a9ea0bfe2ee1bb9b752fc92c1749 343 PIRSF PIRSF006621 10 332 6.3E-72 T 15-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 NJ56_07850 b706a9ea0bfe2ee1bb9b752fc92c1749 343 Gene3D G3DSA:1.20.120.1460 267 339 1.6E-22 T 15-10-2018 NJ56_07850 b706a9ea0bfe2ee1bb9b752fc92c1749 343 SUPERFAMILY SSF51395 21 333 7.33E-75 T 15-10-2018 NJ56_07850 b706a9ea0bfe2ee1bb9b752fc92c1749 343 Gene3D G3DSA:3.20.20.70 19 260 6.8E-74 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_07850 b706a9ea0bfe2ee1bb9b752fc92c1749 343 Pfam PF01207 Dihydrouridine synthase (Dus) 24 324 4.3E-96 T 15-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 NJ56_07850 b706a9ea0bfe2ee1bb9b752fc92c1749 343 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 15 337 52.718 T 15-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 Pfam PF13533 Biotin-lipoyl like 61 104 6.2E-7 T 15-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 402 417 6.7E-55 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 69 89 6.7E-55 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 417 437 6.7E-55 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 27 50 6.7E-55 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 359 382 6.7E-55 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 302 323 6.7E-55 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 335 359 6.7E-55 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 Pfam PF13437 HlyD family secretion protein 290 393 3.3E-13 T 15-10-2018 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 Gene3D G3DSA:2.40.30.170 323 410 8.8E-11 T 15-10-2018 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 21 438 2.7E-105 T 15-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 Gene3D G3DSA:1.10.287.470 242 276 8.8E-11 T 15-10-2018 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 Gene3D G3DSA:1.10.287.470 91 159 2.1E-6 T 15-10-2018 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 Gene3D G3DSA:2.40.50.100 57 90 2.1E-6 T 15-10-2018 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 Gene3D G3DSA:2.40.50.100 277 322 8.8E-11 T 15-10-2018 NJ56_05595 ee85a4734d7b1164d53273717ada07bf 438 ProSitePatterns PS00543 HlyD family secretion proteins signature. 402 424 - T 15-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 Pfam PF02629 CoA binding domain 6 99 9.0E-33 T 15-10-2018 IPR003781 CoA-binding GO:0048037 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 PIRSF PIRSF001553 1 290 1.3E-133 T 15-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 Pfam PF00549 CoA-ligase 151 271 3.8E-20 T 15-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 288 3.1E-145 T 15-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 15-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 9.3E-41 T 15-10-2018 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 9.3E-41 T 15-10-2018 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 9.3E-41 T 15-10-2018 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 9.3E-41 T 15-10-2018 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 Gene3D G3DSA:3.40.50.261 124 289 3.7E-75 T 15-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 SUPERFAMILY SSF52210 123 287 1.02E-54 T 15-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 15-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 Gene3D G3DSA:3.40.50.720 1 123 1.7E-52 T 15-10-2018 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 SUPERFAMILY SSF51735 1 122 2.67E-45 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.059 T 15-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 NJ56_00330 b45f549c3e7050752c33720102b5a7ac 290 SMART SM00881 4 100 1.6E-38 T 15-10-2018 IPR003781 CoA-binding GO:0048037 NJ56_13870 6fa4bac94b12c3efaad0d54151bd698a 284 SUPERFAMILY SSF53335 4 245 4.15E-43 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_13870 6fa4bac94b12c3efaad0d54151bd698a 284 Pfam PF13847 Methyltransferase domain 85 195 5.9E-12 T 15-10-2018 IPR025714 Methyltransferase domain NJ56_13870 6fa4bac94b12c3efaad0d54151bd698a 284 Gene3D G3DSA:3.40.50.150 1 272 2.0E-81 T 15-10-2018 NJ56_13870 6fa4bac94b12c3efaad0d54151bd698a 284 PIRSF PIRSF018249 1 271 7.2E-85 T 15-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 Gene3D G3DSA:3.40.50.80 275 393 7.4E-34 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 Pfam PF00970 Oxidoreductase FAD-binding domain 202 266 8.4E-9 T 15-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 Gene3D G3DSA:3.10.20.30 34 125 7.8E-30 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 SUPERFAMILY SSF52343 255 402 1.57E-37 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 1 407 62.209 T 15-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 SUPERFAMILY SSF54292 37 124 1.16E-22 T 15-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 PIRSF PIRSF000044 1 407 1.1E-216 T 15-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 Gene3D G3DSA:2.40.30.10 126 264 7.0E-49 T 15-10-2018 NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 SUPERFAMILY SSF63380 105 272 6.49E-35 T 15-10-2018 IPR017938 Riboflavin synthase-like beta-barrel NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 40 114 1.7E-10 T 15-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 3 407 1.1E-233 T 15-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 NJ56_01730 0fefe350a9d947a33ec5eb15728493f0 407 Pfam PF00175 Oxidoreductase NAD-binding domain 277 386 1.6E-18 T 15-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 NJ56_07245 759192ff57cbc6fb7bd0bb4d68559668 78 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 67 4.0E-25 T 15-10-2018 IPR010648 Uncharacterised protein family UPF0270 NJ56_07245 759192ff57cbc6fb7bd0bb4d68559668 78 Gene3D G3DSA:1.10.10.610 1 75 5.2E-29 T 15-10-2018 IPR036685 YehU-like superfamily NJ56_07245 759192ff57cbc6fb7bd0bb4d68559668 78 PIRSF PIRSF006169 1 76 4.3E-36 T 15-10-2018 IPR010648 Uncharacterised protein family UPF0270 NJ56_07245 759192ff57cbc6fb7bd0bb4d68559668 78 SUPERFAMILY SSF118001 1 72 5.36E-28 T 15-10-2018 IPR036685 YehU-like superfamily NJ56_07245 759192ff57cbc6fb7bd0bb4d68559668 78 Pfam PF06794 Uncharacterised protein family (UPF0270) 2 69 5.2E-33 T 15-10-2018 IPR010648 Uncharacterised protein family UPF0270 NJ56_07245 759192ff57cbc6fb7bd0bb4d68559668 78 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 70 24.212 T 15-10-2018 IPR010648 Uncharacterised protein family UPF0270 NJ56_16710 5a14401facbc5471d3b1ed613ce3416c 152 Pfam PF02142 MGS-like domain 26 118 4.4E-20 T 15-10-2018 IPR011607 Methylglyoxal synthase-like domain NJ56_16710 5a14401facbc5471d3b1ed613ce3416c 152 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 73 - T 15-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 NJ56_16710 5a14401facbc5471d3b1ed613ce3416c 152 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 5.4E-69 T 15-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 NJ56_16710 5a14401facbc5471d3b1ed613ce3416c 152 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 33.144 T 15-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 NJ56_16710 5a14401facbc5471d3b1ed613ce3416c 152 PIRSF PIRSF006614 8 151 5.9E-66 T 15-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 NJ56_16710 5a14401facbc5471d3b1ed613ce3416c 152 Gene3D G3DSA:3.40.50.1380 1 152 1.4E-69 T 15-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily NJ56_16710 5a14401facbc5471d3b1ed613ce3416c 152 SMART SM00851 25 118 1.4E-28 T 15-10-2018 IPR011607 Methylglyoxal synthase-like domain NJ56_16710 5a14401facbc5471d3b1ed613ce3416c 152 SUPERFAMILY SSF52335 6 151 3.27E-59 T 15-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily NJ56_15160 a5ddd42489de4c25ff752e0904b6f2dc 209 Pfam PF04205 FMN-binding domain 100 187 4.2E-16 T 15-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 NJ56_15160 a5ddd42489de4c25ff752e0904b6f2dc 209 SMART SM00900 100 192 4.2E-28 T 15-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 NJ56_15160 a5ddd42489de4c25ff752e0904b6f2dc 209 PIRSF PIRSF006091 1 204 7.3E-72 T 15-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 NJ56_15160 a5ddd42489de4c25ff752e0904b6f2dc 209 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 2 194 26.132 T 15-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 NJ56_15160 a5ddd42489de4c25ff752e0904b6f2dc 209 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 9 193 1.1E-66 T 15-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 NJ56_04180 ebe5f51c7ce06ed245bfbcf0849d147e 244 Gene3D G3DSA:3.10.20.30 3 106 9.6E-35 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_04180 ebe5f51c7ce06ed245bfbcf0849d147e 244 SUPERFAMILY SSF54292 4 106 8.89E-29 T 15-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 NJ56_04180 ebe5f51c7ce06ed245bfbcf0849d147e 244 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 9 111 1.3E-31 T 15-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04180 ebe5f51c7ce06ed245bfbcf0849d147e 244 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 229 4.2E-97 T 15-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04180 ebe5f51c7ce06ed245bfbcf0849d147e 244 Gene3D G3DSA:1.10.1060.10 107 244 2.6E-51 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_04180 ebe5f51c7ce06ed245bfbcf0849d147e 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_04180 ebe5f51c7ce06ed245bfbcf0849d147e 244 SUPERFAMILY SSF46548 107 229 6.8E-31 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_04180 ebe5f51c7ce06ed245bfbcf0849d147e 244 Pfam PF13183 4Fe-4S dicluster domain 146 219 1.2E-11 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_04180 ebe5f51c7ce06ed245bfbcf0849d147e 244 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 15-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 SUPERFAMILY SSF52540 71 291 1.02E-48 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 PRINTS PR01874 DNA repair protein radA signature 127 144 1.2E-93 T 15-10-2018 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 PRINTS PR01874 DNA repair protein radA signature 216 244 1.2E-93 T 15-10-2018 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 PRINTS PR01874 DNA repair protein radA signature 177 201 1.2E-93 T 15-10-2018 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 PRINTS PR01874 DNA repair protein radA signature 325 348 1.2E-93 T 15-10-2018 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 PRINTS PR01874 DNA repair protein radA signature 11 35 1.2E-93 T 15-10-2018 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 PRINTS PR01874 DNA repair protein radA signature 86 114 1.2E-93 T 15-10-2018 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 PRINTS PR01874 DNA repair protein radA signature 251 277 1.2E-93 T 15-10-2018 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 Gene3D G3DSA:3.30.230.10 305 460 2.5E-21 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 Gene3D G3DSA:3.40.50.300 70 282 7.4E-39 T 15-10-2018 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 SMART SM00382 94 248 3.1E-9 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 454 1.5E-232 T 15-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 Pfam PF13541 Subunit ChlI of Mg-chelatase 348 433 3.7E-9 T 15-10-2018 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 SUPERFAMILY SSF54211 258 457 2.88E-42 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 Pfam PF13481 AAA domain 88 225 8.4E-14 T 15-10-2018 NJ56_03115 1c0e856933af865b31b5b7ed00e601d1 460 Hamap MF_01498 DNA repair protein RadA [radA]. 22 458 42.984 T 15-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 435 452 - T 15-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 Pfam PF00367 phosphotransferase system, EIIB 425 457 3.3E-12 T 15-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 383 482 3.1E-20 T 15-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 SUPERFAMILY SSF55604 422 495 5.36E-18 T 15-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 590 602 - T 15-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 Gene3D G3DSA:2.70.70.10 518 675 1.2E-52 T 15-10-2018 IPR011055 Duplicated hybrid motif NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 Gene3D G3DSA:3.30.1360.60 418 498 1.8E-23 T 15-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 528 651 2.6E-46 T 15-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 528 648 2.5E-47 T 15-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 493 3.8E-204 T 15-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 Pfam PF02378 Phosphotransferase system, EIIC 12 324 7.9E-77 T 15-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 NJ56_00525 b52d8ec09a008882be23985a7bd3613c 676 SUPERFAMILY SSF51261 522 671 3.84E-51 T 15-10-2018 IPR011055 Duplicated hybrid motif NJ56_11335 6a935d97a89b8e2a96ba0cc95cc6b812 219 PIRSF PIRSF002764 1 219 2.1E-86 T 15-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria NJ56_11335 6a935d97a89b8e2a96ba0cc95cc6b812 219 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 5 215 1.1E-95 T 15-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria NJ56_11335 6a935d97a89b8e2a96ba0cc95cc6b812 219 Pfam PF03379 CcmB protein 3 216 9.9E-93 T 15-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11335 6a935d97a89b8e2a96ba0cc95cc6b812 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 155 174 1.7E-72 T 15-10-2018 NJ56_11335 6a935d97a89b8e2a96ba0cc95cc6b812 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 192 215 1.7E-72 T 15-10-2018 NJ56_11335 6a935d97a89b8e2a96ba0cc95cc6b812 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 26 47 1.7E-72 T 15-10-2018 NJ56_11335 6a935d97a89b8e2a96ba0cc95cc6b812 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 75 98 1.7E-72 T 15-10-2018 NJ56_11335 6a935d97a89b8e2a96ba0cc95cc6b812 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 52 69 1.7E-72 T 15-10-2018 NJ56_11335 6a935d97a89b8e2a96ba0cc95cc6b812 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 100 118 1.7E-72 T 15-10-2018 NJ56_17565 ecd203c21901965b59890477a2eb3ab6 310 SUPERFAMILY SSF53850 45 300 9.23E-45 T 15-10-2018 NJ56_17565 ecd203c21901965b59890477a2eb3ab6 310 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 45 291 1.8E-47 T 15-10-2018 NJ56_17565 ecd203c21901965b59890477a2eb3ab6 310 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 1 306 7.4E-98 T 15-10-2018 IPR017797 Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190 NJ56_17565 ecd203c21901965b59890477a2eb3ab6 310 Gene3D G3DSA:3.40.190.10 118 244 3.0E-55 T 15-10-2018 NJ56_17565 ecd203c21901965b59890477a2eb3ab6 310 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 1 269 2.2E-82 T 15-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 NJ56_17565 ecd203c21901965b59890477a2eb3ab6 310 Gene3D G3DSA:3.40.190.10 32 272 3.0E-55 T 15-10-2018 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 Gene3D G3DSA:1.20.1640.10 508 1010 1.5E-245 T 15-10-2018 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 Pfam PF00873 AcrB/AcrD/AcrF family 6 1012 1.3E-158 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 SUPERFAMILY SSF82693 559 628 6.28E-6 T 15-10-2018 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 SUPERFAMILY SSF82693 136 326 1.52E-22 T 15-10-2018 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 Gene3D G3DSA:3.30.70.1430 40 807 1.5E-245 T 15-10-2018 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 Gene3D G3DSA:3.30.2090.10 179 271 1.5E-245 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 Gene3D G3DSA:3.30.2090.10 709 799 1.5E-245 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 Gene3D G3DSA:3.30.70.1430 559 657 1.5E-245 T 15-10-2018 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 Gene3D G3DSA:1.20.1640.10 13 507 1.5E-245 T 15-10-2018 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 5.2E-20 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 5.2E-20 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 5.2E-20 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 5.2E-20 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 5.2E-20 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 SUPERFAMILY SSF82866 795 1013 6.41E-46 T 15-10-2018 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 SUPERFAMILY SSF82714 722 792 5.75E-9 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 Gene3D G3DSA:3.30.70.1320 136 328 1.5E-245 T 15-10-2018 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 Gene3D G3DSA:3.30.70.1440 658 859 1.5E-245 T 15-10-2018 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 SUPERFAMILY SSF82693 40 135 3.31E-19 T 15-10-2018 NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 SUPERFAMILY SSF82714 184 266 1.57E-9 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_03245 cca65b73a4af77e9afa15ca26c20154b 1024 SUPERFAMILY SSF82866 293 489 9.16E-37 T 15-10-2018 NJ56_03695 4e6c7aa3f638d36acc01539a1fbb4e4d 187 PIRSF PIRSF009554 44 187 3.1E-62 T 15-10-2018 IPR011194 Uncharacterised protein family UPF0306 NJ56_03695 4e6c7aa3f638d36acc01539a1fbb4e4d 187 Gene3D G3DSA:2.30.110.10 36 182 3.5E-12 T 15-10-2018 IPR012349 FMN-binding split barrel GO:0048037 NJ56_03695 4e6c7aa3f638d36acc01539a1fbb4e4d 187 SUPERFAMILY SSF50475 46 182 9.08E-16 T 15-10-2018 NJ56_03695 4e6c7aa3f638d36acc01539a1fbb4e4d 187 Hamap MF_00764 UPF0306 protein YhbP [yhbP]. 47 184 35.237 T 15-10-2018 IPR011194 Uncharacterised protein family UPF0306 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 281 2.8E-35 T 15-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 SUPERFAMILY SSF88659 200 284 3.18E-19 T 15-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 Gene3D G3DSA:1.20.120.1810 2 122 7.0E-27 T 15-10-2018 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 14 284 8.6E-130 T 15-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 Pfam PF00140 Sigma-70 factor, region 1.2 15 40 4.4E-7 T 15-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 Gene3D G3DSA:1.10.10.10 214 284 3.9E-16 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 Pfam PF04542 Sigma-70 region 2 53 122 3.3E-16 T 15-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 285 54.342 T 15-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 PIRSF PIRSF000770 6 285 1.3E-32 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 Pfam PF04545 Sigma-70, region 4 229 280 3.1E-16 T 15-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 SUPERFAMILY SSF88946 12 122 2.83E-39 T 15-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 PRINTS PR00046 Major sigma-70 factor signature 77 90 3.9E-19 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 PRINTS PR00046 Major sigma-70 factor signature 253 268 3.9E-19 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 PRINTS PR00046 Major sigma-70 factor signature 233 245 3.9E-19 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 PRINTS PR00046 Major sigma-70 factor signature 268 279 3.9E-19 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_05095 9fa98631f1741b109bffd084fa88db32 285 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 253 279 - T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_15920 ac3a2ae69d869e91afb84450889bd316 534 Gene3D G3DSA:2.40.160.50 155 534 1.8E-66 T 15-10-2018 NJ56_15920 ac3a2ae69d869e91afb84450889bd316 534 Pfam PF17287 POTRA domain 130 178 3.7E-13 T 15-10-2018 IPR035251 ShlB, POTRA domain NJ56_15920 ac3a2ae69d869e91afb84450889bd316 534 PIRSF PIRSF029745 17 534 1.9E-107 T 15-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 NJ56_15920 ac3a2ae69d869e91afb84450889bd316 534 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 183 496 4.1E-80 T 15-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal NJ56_15920 ac3a2ae69d869e91afb84450889bd316 534 Pfam PF08479 POTRA domain, ShlB-type 54 126 5.3E-12 T 15-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type NJ56_15920 ac3a2ae69d869e91afb84450889bd316 534 Gene3D G3DSA:3.10.20.310 37 126 4.9E-8 T 15-10-2018 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 SUPERFAMILY SSF47794 429 492 4.08E-17 T 15-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 Gene3D G3DSA:3.30.300.20 278 346 1.6E-23 T 15-10-2018 IPR015946 K homology domain-like, alpha/beta NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 Gene3D G3DSA:3.30.300.20 199 277 1.4E-30 T 15-10-2018 IPR015946 K homology domain-like, alpha/beta NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 410 29.11 T 15-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 Pfam PF14520 Helix-hairpin-helix domain 432 486 8.7E-9 T 15-10-2018 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 Gene3D G3DSA:1.10.150.20 431 490 2.6E-25 T 15-10-2018 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 SUPERFAMILY SSF50249 133 199 3.2E-17 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 SMART SM00322 230 293 17.0 T 15-10-2018 IPR004087 K Homology domain GO:0003676 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 SMART SM00322 301 358 0.11 T 15-10-2018 IPR004087 K Homology domain GO:0003676 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 Pfam PF13184 NusA-like KH domain 230 297 8.1E-28 T 15-10-2018 IPR025249 KH domain, NusA-like GO:0003723 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 441 489 7.5E-17 T 15-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 365 414 6.6E-21 T 15-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 SMART SM00316 133 200 1.8E-8 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 Pfam PF08529 NusA N-terminal domain 4 123 1.2E-36 T 15-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 Gene3D G3DSA:3.30.1480.10 1 129 3.7E-46 T 15-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 SUPERFAMILY SSF69705 1 126 4.45E-42 T 15-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 SUPERFAMILY SSF54814 202 278 1.05E-28 T 15-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 Gene3D G3DSA:1.10.150.20 352 421 8.6E-31 T 15-10-2018 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 342 7.9E-131 T 15-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 SUPERFAMILY SSF54814 279 342 7.19E-15 T 15-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 SUPERFAMILY SSF47794 355 415 2.67E-16 T 15-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 NJ56_03790 7be96d80bd4a9048700017256f64e79b 495 Gene3D G3DSA:2.40.50.140 135 198 1.1E-19 T 15-10-2018 NJ56_01105 ba5409455c4e550e61320649b0c93ca6 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 4 363 4.0E-69 T 15-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 NJ56_01105 ba5409455c4e550e61320649b0c93ca6 376 Gene3D G3DSA:3.40.50.2000 188 328 1.9E-104 T 15-10-2018 NJ56_01105 ba5409455c4e550e61320649b0c93ca6 376 SUPERFAMILY SSF53756 3 373 2.09E-112 T 15-10-2018 NJ56_01105 ba5409455c4e550e61320649b0c93ca6 376 Gene3D G3DSA:3.40.50.2000 6 187 1.9E-104 T 15-10-2018 NJ56_01105 ba5409455c4e550e61320649b0c93ca6 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 30 361 1.1E-91 T 15-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 NJ56_13980 93b0f06b962bf86fd0a073925cd59519 393 Gene3D G3DSA:3.30.470.20 197 390 4.1E-61 T 15-10-2018 NJ56_13980 93b0f06b962bf86fd0a073925cd59519 393 Gene3D G3DSA:3.40.50.20 2 122 1.2E-53 T 15-10-2018 NJ56_13980 93b0f06b962bf86fd0a073925cd59519 393 Gene3D G3DSA:3.30.1490.20 123 196 1.4E-31 T 15-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 NJ56_13980 93b0f06b962bf86fd0a073925cd59519 393 SUPERFAMILY SSF56059 113 314 6.72E-55 T 15-10-2018 NJ56_13980 93b0f06b962bf86fd0a073925cd59519 393 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 8 391 51.857 T 15-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 NJ56_13980 93b0f06b962bf86fd0a073925cd59519 393 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 390 1.2E-189 T 15-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 NJ56_13980 93b0f06b962bf86fd0a073925cd59519 393 SUPERFAMILY SSF51246 320 390 1.11E-19 T 15-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 NJ56_13980 93b0f06b962bf86fd0a073925cd59519 393 Pfam PF02222 ATP-grasp domain 123 295 1.9E-56 T 15-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type NJ56_13980 93b0f06b962bf86fd0a073925cd59519 393 SUPERFAMILY SSF52440 4 112 1.25E-35 T 15-10-2018 IPR016185 Pre-ATP-grasp domain superfamily NJ56_01680 0593847f655798e8e5921fd3ed415809 417 PIRSF PIRSF000151 1 417 2.8E-171 T 15-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 NJ56_01680 0593847f655798e8e5921fd3ed415809 417 SUPERFAMILY SSF53720 3 412 2.62E-115 T 15-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 NJ56_01680 0593847f655798e8e5921fd3ed415809 417 Gene3D G3DSA:3.40.605.10 15 411 9.2E-160 T 15-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 NJ56_01680 0593847f655798e8e5921fd3ed415809 417 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 9 406 7.6E-184 T 15-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 NJ56_01680 0593847f655798e8e5921fd3ed415809 417 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 1 416 40.911 T 15-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 NJ56_01680 0593847f655798e8e5921fd3ed415809 417 Pfam PF00171 Aldehyde dehydrogenase family 3 280 4.7E-14 T 15-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 NJ56_01680 0593847f655798e8e5921fd3ed415809 417 Gene3D G3DSA:3.40.309.10 222 374 9.2E-160 T 15-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 NJ56_01680 0593847f655798e8e5921fd3ed415809 417 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 323 344 - T 15-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 NJ56_15465 30664ad9a862a662710cc08a3cdf8708 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 465 5.5E-87 T 15-10-2018 IPR000914 Solute-binding protein family 5 domain NJ56_15465 30664ad9a862a662710cc08a3cdf8708 545 PIRSF PIRSF002741 1 544 5.1E-113 T 15-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 NJ56_15465 30664ad9a862a662710cc08a3cdf8708 545 SUPERFAMILY SSF53850 37 527 2.96E-146 T 15-10-2018 NJ56_15465 30664ad9a862a662710cc08a3cdf8708 545 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 89 110 - T 15-10-2018 IPR023765 Solute-binding protein family 5, conserved site NJ56_15465 30664ad9a862a662710cc08a3cdf8708 545 Gene3D G3DSA:3.90.76.10 73 196 3.2E-206 T 15-10-2018 NJ56_15465 30664ad9a862a662710cc08a3cdf8708 545 Gene3D G3DSA:3.10.105.10 299 514 3.2E-206 T 15-10-2018 NJ56_15465 30664ad9a862a662710cc08a3cdf8708 545 Gene3D G3DSA:3.40.190.10 43 526 3.2E-206 T 15-10-2018 NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 SUPERFAMILY SSF46785 426 493 8.94E-12 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 SUPERFAMILY SSF52540 2 165 4.64E-40 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 26 41 - T 15-10-2018 IPR031157 Tr-type G domain, conserved site NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 Gene3D G3DSA:3.40.50.300 1 173 1.3E-44 T 15-10-2018 NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 Pfam PF09107 Elongation factor SelB, winged helix 569 614 4.4E-20 T 15-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 Gene3D G3DSA:2.40.30.10 176 265 1.4E-23 T 15-10-2018 NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 Pfam PF00009 Elongation factor Tu GTP binding domain 2 165 1.4E-31 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 SUPERFAMILY SSF46785 565 616 7.89E-14 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 SUPERFAMILY SSF50447 180 298 7.07E-24 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 Gene3D G3DSA:1.10.10.10 556 616 4.4E-27 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 SUPERFAMILY SSF50465 280 359 2.63E-9 T 15-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 Pfam PF09106 Elongation factor SelB, winged helix 434 489 2.6E-15 T 15-10-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 616 5.6E-204 T 15-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 Gene3D G3DSA:1.10.10.10 496 555 5.5E-25 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 PRINTS PR00315 GTP-binding elongation factor signature 70 81 1.6E-7 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 PRINTS PR00315 GTP-binding elongation factor signature 107 116 1.6E-7 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 PRINTS PR00315 GTP-binding elongation factor signature 54 64 1.6E-7 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_06585 fa3abe3b1fe93234b22f1474c011e63d 621 PRINTS PR00315 GTP-binding elongation factor signature 2 15 1.6E-7 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 Pfam PF01556 DnaJ C terminal domain 119 331 4.4E-46 T 15-10-2018 IPR002939 Chaperone DnaJ, C-terminal NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 SUPERFAMILY SSF49493 257 342 1.05E-21 T 15-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 Pfam PF00684 DnaJ central domain 145 205 5.0E-16 T 15-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 SUPERFAMILY SSF46565 1 105 4.97E-35 T 15-10-2018 IPR036869 Chaperone J-domain superfamily NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 Gene3D G3DSA:1.10.287.110 1 113 6.4E-38 T 15-10-2018 IPR036869 Chaperone J-domain superfamily NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 SMART SM00271 4 61 1.2E-28 T 15-10-2018 IPR001623 DnaJ domain NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 PRINTS PR00625 DnaJ domain signature 25 40 1.3E-31 T 15-10-2018 IPR001623 DnaJ domain NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 PRINTS PR00625 DnaJ domain signature 61 80 1.3E-31 T 15-10-2018 IPR001623 DnaJ domain NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 PRINTS PR00625 DnaJ domain signature 7 25 1.3E-31 T 15-10-2018 IPR001623 DnaJ domain NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 PRINTS PR00625 DnaJ domain signature 41 61 1.3E-31 T 15-10-2018 IPR001623 DnaJ domain NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 15-10-2018 IPR018253 DnaJ domain, conserved site NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 Pfam PF00226 DnaJ domain 5 66 3.8E-26 T 15-10-2018 IPR001623 DnaJ domain NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 SUPERFAMILY SSF49493 113 260 3.14E-21 T 15-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 348 2.1E-142 T 15-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 371 42.364 T 15-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 Gene3D G3DSA:2.60.260.20 255 358 2.8E-29 T 15-10-2018 NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 SUPERFAMILY SSF57938 132 209 4.71E-24 T 15-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily NJ56_02995 fa4d20b83ada1aa4a7ae0219b00f3a9b 377 Gene3D G3DSA:2.10.230.10 143 209 1.4E-23 T 15-10-2018 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 3.4E-27 T 15-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Gene3D G3DSA:3.90.1100.10 643 713 5.4E-21 T 15-10-2018 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 15-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.312 T 15-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Gene3D G3DSA:3.90.1110.10 317 440 5.1E-36 T 15-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1264 6.2E-160 T 15-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Gene3D G3DSA:2.40.270.10 1009 1242 2.1E-92 T 15-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 1.5E-30 T 15-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 1.2E-57 T 15-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Gene3D G3DSA:3.90.1100.10 441 624 3.0E-70 T 15-10-2018 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Gene3D G3DSA:3.90.1100.10 19 156 2.6E-49 T 15-10-2018 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 15-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Gene3D G3DSA:2.40.270.10 790 832 5.4E-7 T 15-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Gene3D G3DSA:3.90.1110.10 157 245 8.8E-28 T 15-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 2.0E-26 T 15-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Gene3D G3DSA:2.40.50.150 833 955 8.0E-44 T 15-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Gene3D G3DSA:2.40.50.100 714 788 6.9E-32 T 15-10-2018 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Gene3D G3DSA:3.90.1800.10 1252 1306 8.1E-11 T 15-10-2018 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 224 1.0E-6 T 15-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 336 454 3.5E-16 T 15-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04755 d40ca4fb43374728c56c3d921bb929d4 1342 SUPERFAMILY SSF64484 11 1340 0.0 T 15-10-2018 NJ56_08795 715e6684d76a0e4e9a2680011d6d8547 299 Gene3D G3DSA:1.10.10.60 187 295 1.0E-27 T 15-10-2018 NJ56_08795 715e6684d76a0e4e9a2680011d6d8547 299 Pfam PF12833 Helix-turn-helix domain 214 289 5.8E-21 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_08795 715e6684d76a0e4e9a2680011d6d8547 299 SUPERFAMILY SSF46689 244 291 1.61E-10 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_08795 715e6684d76a0e4e9a2680011d6d8547 299 SUPERFAMILY SSF46689 191 242 3.94E-10 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_08795 715e6684d76a0e4e9a2680011d6d8547 299 SMART SM00342 208 291 2.9E-25 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_08795 715e6684d76a0e4e9a2680011d6d8547 299 Pfam PF06719 AraC-type transcriptional regulator N-terminus 28 179 1.4E-41 T 15-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal NJ56_16165 0d0bffe710df1c98b9c087592a4fe8f0 341 Pfam PF03824 High-affinity nickel-transport protein 42 328 7.4E-84 T 15-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 NJ56_16165 0d0bffe710df1c98b9c087592a4fe8f0 341 TIGRFAM TIGR00802 nico: transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family 45 324 6.2E-120 T 15-10-2018 IPR004688 Transition metal uptake transporter nickel/cobalt GO:0015099|GO:0016021|GO:0035444|GO:0046872 NJ56_03125 3622078ac2194f33c6dcad7805a6d6b1 232 Pfam PF10144 Bacterial virulence factor haemolysin 1 162 5.4E-69 T 15-10-2018 IPR019305 Uncharacterised protein family Smp NJ56_13845 12ec9c9dec6d3ddfa535903c28af0103 200 SUPERFAMILY SSF56925 43 200 4.32E-77 T 15-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel NJ56_13845 12ec9c9dec6d3ddfa535903c28af0103 200 Pfam PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP 52 197 7.8E-69 T 15-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP NJ56_13845 12ec9c9dec6d3ddfa535903c28af0103 200 ProDom PD103779 CRCA ANTIMICROBIAL RESISTANCE LIPOPROTEIN RCP A PEPTIDE ACYLATION LIPID EXPORTED 52 188 9.0E-56 T 15-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP NJ56_13845 12ec9c9dec6d3ddfa535903c28af0103 200 Hamap MF_00837 Lipid A palmitoyltransferase PagP [pagP]. 3 200 41.746 T 15-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP NJ56_13845 12ec9c9dec6d3ddfa535903c28af0103 200 Gene3D G3DSA:2.40.160.20 41 200 3.7E-72 T 15-10-2018 NJ56_03830 808cc50ad29b30874adac4625dda9894 209 SUPERFAMILY SSF53335 31 207 1.82E-41 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_03830 808cc50ad29b30874adac4625dda9894 209 TIGRFAM TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J 20 206 1.9E-94 T 15-10-2018 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria GO:0006364|GO:0016436 NJ56_03830 808cc50ad29b30874adac4625dda9894 209 PIRSF PIRSF005461 1 209 3.1E-81 T 15-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 NJ56_03830 808cc50ad29b30874adac4625dda9894 209 Pfam PF01728 FtsJ-like methyltransferase 31 206 4.3E-57 T 15-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 NJ56_03830 808cc50ad29b30874adac4625dda9894 209 Gene3D G3DSA:3.40.50.150 30 208 1.4E-60 T 15-10-2018 NJ56_03830 808cc50ad29b30874adac4625dda9894 209 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 15 208 27.589 T 15-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 NJ56_10535 e08f94bae82e16c6291ce4ed38986e1e 409 Gene3D G3DSA:3.40.640.10 21 267 3.0E-167 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_10535 e08f94bae82e16c6291ce4ed38986e1e 409 Pfam PF00266 Aminotransferase class-V 10 373 3.6E-87 T 15-10-2018 IPR000192 Aminotransferase class V domain NJ56_10535 e08f94bae82e16c6291ce4ed38986e1e 409 SUPERFAMILY SSF53383 8 395 1.84E-115 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_10535 e08f94bae82e16c6291ce4ed38986e1e 409 PIRSF PIRSF005572 7 389 9.7E-138 T 15-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 NJ56_10535 e08f94bae82e16c6291ce4ed38986e1e 409 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 202 221 - T 15-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site NJ56_10535 e08f94bae82e16c6291ce4ed38986e1e 409 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 6 400 54.317 T 15-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 NJ56_10535 e08f94bae82e16c6291ce4ed38986e1e 409 Gene3D G3DSA:3.90.1150.10 10 381 3.0E-167 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_10535 e08f94bae82e16c6291ce4ed38986e1e 409 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 6 409 6.8E-230 T 15-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 NJ56_13395 b8e4ec4377bb98fcc59fe9c3b62b0750 82 Pfam PF10809 Protein of unknown function (DUF2732) 18 78 8.3E-16 T 15-10-2018 IPR020126 Protein of unknown function DUF2732 NJ56_13395 b8e4ec4377bb98fcc59fe9c3b62b0750 82 ProDom PD057914 C0939 STY4639 GPA GP33 PRECURSOR FELS-2 5'REGION STY3665 SIGNAL PHAGE-RELATED 22 82 1.0E-25 T 15-10-2018 IPR020126 Protein of unknown function DUF2732 NJ56_17235 91e99ad07611fe7385b908fdac4af10f 299 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 6 299 35.892 T 15-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 NJ56_17235 91e99ad07611fe7385b908fdac4af10f 299 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 197 5.6E-57 T 15-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 NJ56_17235 91e99ad07611fe7385b908fdac4af10f 299 Pfam PF08029 HisG, C-terminal domain 223 296 1.3E-23 T 15-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 NJ56_17235 91e99ad07611fe7385b908fdac4af10f 299 Pfam PF01634 ATP phosphoribosyltransferase 54 219 6.6E-48 T 15-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 NJ56_17235 91e99ad07611fe7385b908fdac4af10f 299 Gene3D G3DSA:3.40.190.10 103 192 2.0E-74 T 15-10-2018 NJ56_17235 91e99ad07611fe7385b908fdac4af10f 299 SUPERFAMILY SSF53850 6 224 6.12E-70 T 15-10-2018 NJ56_17235 91e99ad07611fe7385b908fdac4af10f 299 SUPERFAMILY SSF54913 226 298 3.89E-21 T 15-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta NJ56_17235 91e99ad07611fe7385b908fdac4af10f 299 Gene3D G3DSA:3.30.70.120 226 299 1.9E-34 T 15-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal NJ56_17235 91e99ad07611fe7385b908fdac4af10f 299 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 156 177 - T 15-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 NJ56_17235 91e99ad07611fe7385b908fdac4af10f 299 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 201 298 2.3E-32 T 15-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 NJ56_17235 91e99ad07611fe7385b908fdac4af10f 299 Gene3D G3DSA:3.40.190.10 7 221 2.0E-74 T 15-10-2018 NJ56_03295 970f443ebb75650e3c6d3ceaf2545275 408 Gene3D G3DSA:3.20.20.70 9 392 3.8E-114 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_03295 970f443ebb75650e3c6d3ceaf2545275 408 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 173 404 3.0E-14 T 15-10-2018 NJ56_03295 970f443ebb75650e3c6d3ceaf2545275 408 Pfam PF04055 Radical SAM superfamily 19 188 3.7E-14 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_03295 970f443ebb75650e3c6d3ceaf2545275 408 SUPERFAMILY SSF102114 18 351 6.28E-39 T 15-10-2018 NJ56_03295 970f443ebb75650e3c6d3ceaf2545275 408 Pfam PF13186 Iron-sulfur cluster-binding domain 282 341 2.4E-7 T 15-10-2018 IPR023885 4Fe4S-binding SPASM domain NJ56_03295 970f443ebb75650e3c6d3ceaf2545275 408 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 281 370 3.4E-19 T 15-10-2018 IPR023885 4Fe4S-binding SPASM domain NJ56_03295 970f443ebb75650e3c6d3ceaf2545275 408 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 12 389 2.6E-159 T 15-10-2018 NJ56_10300 132880f370ec5bd45fe52eb90b37854f 127 SUPERFAMILY SSF51998 27 125 2.24E-24 T 15-10-2018 NJ56_10300 132880f370ec5bd45fe52eb90b37854f 127 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 127 42.298 T 15-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA NJ56_10300 132880f370ec5bd45fe52eb90b37854f 127 ProSitePatterns PS00850 Glycine radical domain signature. 97 105 - T 15-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site NJ56_10300 132880f370ec5bd45fe52eb90b37854f 127 Gene3D G3DSA:3.20.70.20 54 127 4.7E-25 T 15-10-2018 NJ56_10300 132880f370ec5bd45fe52eb90b37854f 127 PIRSF PIRSF000378 2 127 4.1E-55 T 15-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA NJ56_10300 132880f370ec5bd45fe52eb90b37854f 127 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 127 2.1E-72 T 15-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA NJ56_10300 132880f370ec5bd45fe52eb90b37854f 127 Pfam PF01228 Glycine radical 14 108 2.0E-23 T 15-10-2018 IPR001150 Glycine radical domain GO:0003824 NJ56_16685 ffd293f977fec5938e67685d87725d9d 92 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 15-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 NJ56_16685 ffd293f977fec5938e67685d87725d9d 92 Pfam PF00708 Acylphosphatase 8 90 1.2E-23 T 15-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 NJ56_16685 ffd293f977fec5938e67685d87725d9d 92 Gene3D G3DSA:3.30.70.100 1 91 1.3E-28 T 15-10-2018 NJ56_16685 ffd293f977fec5938e67685d87725d9d 92 SUPERFAMILY SSF54975 2 92 5.89E-28 T 15-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 NJ56_16685 ffd293f977fec5938e67685d87725d9d 92 Hamap MF_01450 Acylphosphatase [yccX]. 2 91 27.979 T 15-10-2018 IPR028627 Acylphosphatase, bacteria GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 NJ56_16685 ffd293f977fec5938e67685d87725d9d 92 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 15-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 NJ56_01145 149bd0a0e792b2a83a718ef1f1da74e0 172 Gene3D G3DSA:2.60.120.10 1 172 9.8E-60 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_01145 149bd0a0e792b2a83a718ef1f1da74e0 172 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 171 3.3E-49 T 15-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 NJ56_01145 149bd0a0e792b2a83a718ef1f1da74e0 172 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 4 166 2.0E-74 T 15-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 NJ56_01145 149bd0a0e792b2a83a718ef1f1da74e0 172 SUPERFAMILY SSF51182 1 171 5.73E-53 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_02755 f05b48279aaf5c8538d06c8d4d325a78 313 Gene3D G3DSA:3.40.50.150 10 310 4.5E-107 T 15-10-2018 NJ56_02755 f05b48279aaf5c8538d06c8d4d325a78 313 PIRSF PIRSF004486 1 312 1.5E-100 T 15-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 NJ56_02755 f05b48279aaf5c8538d06c8d4d325a78 313 SUPERFAMILY SSF53335 7 311 1.45E-45 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_02755 f05b48279aaf5c8538d06c8d4d325a78 313 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 310 1.2E-126 T 15-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 NJ56_02755 f05b48279aaf5c8538d06c8d4d325a78 313 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 311 38.6 T 15-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 NJ56_02755 f05b48279aaf5c8538d06c8d4d325a78 313 Pfam PF01795 MraW methylase family 5 310 3.4E-116 T 15-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 NJ56_02755 f05b48279aaf5c8538d06c8d4d325a78 313 SUPERFAMILY SSF81799 114 213 4.19E-34 T 15-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 NJ56_02755 f05b48279aaf5c8538d06c8d4d325a78 313 Gene3D G3DSA:1.10.150.170 112 214 4.5E-107 T 15-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 527 623 2.2E-13 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 SMART SM00304 334 386 0.0015 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 PIRSF PIRSF037119 374 636 4.1E-103 T 15-10-2018 IPR017116 Signal transduction histidine kinase, PgtB NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 PIRSF PIRSF037119 1 381 5.5E-102 T 15-10-2018 IPR017116 Signal transduction histidine kinase, PgtB NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 PRINTS PR00344 Bacterial sensor protein C-terminal signature 583 593 2.9E-5 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 579 2.9E-5 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 PRINTS PR00344 Bacterial sensor protein C-terminal signature 594 612 2.9E-5 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 Gene3D G3DSA:1.10.287.130 394 480 7.1E-16 T 15-10-2018 NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 Gene3D G3DSA:1.20.1480.50 295 393 2.5E-5 T 15-10-2018 NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 SMART SM00388 417 485 6.5E-6 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 SMART SM00387 527 634 1.9E-18 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 Pfam PF00512 His Kinase A (phospho-acceptor) domain 419 482 8.2E-7 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 Gene3D G3DSA:3.30.565.10 485 635 1.5E-26 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 SUPERFAMILY SSF47384 407 482 1.2E-7 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_01470 d0a7754e2853b6658e926d71ab19d0f1 638 SUPERFAMILY SSF55874 476 630 2.23E-27 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_04080 1df28745ff985662d5a3ddb7b420effb 66 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 60 2.2E-22 T 15-10-2018 IPR019201 Protein of unknown function DUF2065 NJ56_13160 f1bfa48fe553aea36eb4d31c3086ea2a 515 Gene3D G3DSA:1.10.10.10 4 109 3.1E-23 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_13160 f1bfa48fe553aea36eb4d31c3086ea2a 515 SMART SM00862 24 100 2.1E-17 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_13160 f1bfa48fe553aea36eb4d31c3086ea2a 515 Gene3D G3DSA:1.25.40.10 354 514 1.5E-30 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_13160 f1bfa48fe553aea36eb4d31c3086ea2a 515 SUPERFAMILY SSF46894 2 102 1.98E-20 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_13160 f1bfa48fe553aea36eb4d31c3086ea2a 515 Gene3D G3DSA:3.40.50.11830 194 353 3.0E-76 T 15-10-2018 NJ56_13160 f1bfa48fe553aea36eb4d31c3086ea2a 515 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 100 5.8E-17 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_15935 4113d1325d09eab25a444561cd49ae6f 215 Gene3D G3DSA:1.10.10.10 95 174 3.6E-30 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_15935 4113d1325d09eab25a444561cd49ae6f 215 Gene3D G3DSA:1.10.10.10 1 90 5.7E-34 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_15935 4113d1325d09eab25a444561cd49ae6f 215 Pfam PF04337 Protein of unknown function, DUF480 5 158 8.7E-63 T 15-10-2018 IPR007432 Protein of unknown function DUF480 NJ56_15935 4113d1325d09eab25a444561cd49ae6f 215 SUPERFAMILY SSF46785 90 171 1.61E-28 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_15935 4113d1325d09eab25a444561cd49ae6f 215 SUPERFAMILY SSF46785 2 84 6.6E-31 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_15935 4113d1325d09eab25a444561cd49ae6f 215 Hamap MF_01584 UPF0502 protein YceH [yceH]. 5 211 33.61 T 15-10-2018 IPR007432 Protein of unknown function DUF480 NJ56_13620 b193bc2137a42ed564a3e9f3c97c4a1e 312 TIGRFAM TIGR03814 Gln_ase: glutaminase A 22 309 7.1E-108 T 15-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 NJ56_13620 b193bc2137a42ed564a3e9f3c97c4a1e 312 SUPERFAMILY SSF56601 5 309 2.95E-104 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_13620 b193bc2137a42ed564a3e9f3c97c4a1e 312 Pfam PF04960 Glutaminase 25 309 9.0E-101 T 15-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 NJ56_13620 b193bc2137a42ed564a3e9f3c97c4a1e 312 Hamap MF_00313 Glutaminase [glsA]. 7 309 41.434 T 15-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 NJ56_13620 b193bc2137a42ed564a3e9f3c97c4a1e 312 Gene3D G3DSA:3.40.710.10 2 311 1.1E-110 T 15-10-2018 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 SUPERFAMILY SSF52540 2 235 2.03E-56 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 Pfam PF00679 Elongation factor G C-terminus 399 482 7.8E-20 T 15-10-2018 IPR000640 Elongation factor EFG, domain V-like NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 7.7E-300 T 15-10-2018 IPR006297 Elongation factor 4 GO:0005525 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 3.1E-52 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 3.0E-49 T 15-10-2018 IPR013842 GTP-binding protein LepA, C-terminal NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 PRINTS PR00315 GTP-binding elongation factor signature 90 101 4.0E-14 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 PRINTS PR00315 GTP-binding elongation factor signature 126 135 4.0E-14 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-14 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 PRINTS PR00315 GTP-binding elongation factor signature 74 84 4.0E-14 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.0E-14 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 306.367 T 15-10-2018 IPR006297 Elongation factor 4 GO:0005525 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 SUPERFAMILY SSF54980 292 370 3.02E-18 T 15-10-2018 IPR035647 EF-G domain III/V-like NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 Gene3D G3DSA:2.40.30.10 186 285 1.8E-34 T 15-10-2018 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 Gene3D G3DSA:3.30.70.3380 368 478 9.5E-40 T 15-10-2018 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 15-10-2018 IPR031157 Tr-type G domain, conserved site NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 Gene3D G3DSA:3.40.50.300 1 185 2.1E-70 T 15-10-2018 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 Pfam PF03144 Elongation factor Tu domain 2 205 275 1.3E-11 T 15-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 Gene3D G3DSA:3.30.70.2570 479 553 7.8E-34 T 15-10-2018 IPR038363 LepA, C-terminal domain superfamily NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 SUPERFAMILY SSF54980 399 493 9.11E-25 T 15-10-2018 IPR035647 EF-G domain III/V-like NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 171 4.6E-17 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_10350 e13f3f275716b572f09edcd74e7c00e0 599 Gene3D G3DSA:3.30.70.870 286 367 2.3E-35 T 15-10-2018 NJ56_03185 1299c81167114fe11e64b8fbe89ace90 145 PIRSF PIRSF029225 2 131 1.1E-51 T 15-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_03185 1299c81167114fe11e64b8fbe89ace90 145 SUPERFAMILY SSF102220 27 135 1.83E-35 T 15-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_03185 1299c81167114fe11e64b8fbe89ace90 145 Pfam PF03603 DNA polymerase III psi subunit 3 127 2.3E-48 T 15-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_03185 1299c81167114fe11e64b8fbe89ace90 145 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 34 125 5.0E-38 T 15-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_03185 1299c81167114fe11e64b8fbe89ace90 145 Gene3D G3DSA:3.40.50.10220 33 137 1.0E-38 T 15-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 SUPERFAMILY SSF82679 6 116 2.49E-39 T 15-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 Pfam PF02357 Transcription termination factor nusG 7 112 7.0E-27 T 15-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 Gene3D G3DSA:3.30.70.940 1 121 3.9E-47 T 15-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 SUPERFAMILY SSF50104 125 180 1.15E-19 T 15-10-2018 IPR008991 Translation protein SH3-like domain superfamily NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 Pfam PF00467 KOW motif 130 162 9.5E-8 T 15-10-2018 IPR005824 KOW NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 SMART SM00738 6 115 9.1E-49 T 15-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 15-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 SMART SM00739 127 154 2.0E-6 T 15-10-2018 IPR005824 KOW NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 24.564 T 15-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 Gene3D G3DSA:2.30.30.30 122 180 2.3E-26 T 15-10-2018 IPR014722 Ribosomal protein L2, domain 2 NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 1.9E-21 T 15-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 1.9E-21 T 15-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 1.9E-21 T 15-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 NJ56_04785 ffe74934ae29f65cdf55a2a0bee9b1fd 181 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 180 8.2E-70 T 15-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 NJ56_14255 3900421b7bba8c1069ad460262660cfa 65 Gene3D G3DSA:2.40.50.530 1 65 2.1E-19 T 15-10-2018 NJ56_14255 3900421b7bba8c1069ad460262660cfa 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 15-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_14255 3900421b7bba8c1069ad460262660cfa 65 Pfam PF01632 Ribosomal protein L35 2 60 2.7E-23 T 15-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14255 3900421b7bba8c1069ad460262660cfa 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.5E-26 T 15-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 NJ56_14255 3900421b7bba8c1069ad460262660cfa 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 5.2E-22 T 15-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 NJ56_14255 3900421b7bba8c1069ad460262660cfa 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 5.2E-22 T 15-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 NJ56_14255 3900421b7bba8c1069ad460262660cfa 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 5.2E-22 T 15-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 NJ56_14255 3900421b7bba8c1069ad460262660cfa 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.039 T 15-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 NJ56_14255 3900421b7bba8c1069ad460262660cfa 65 SUPERFAMILY SSF143034 2 64 1.44E-22 T 15-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_02085 b8633ec80ab783ada9574efc627d01a0 164 Gene3D G3DSA:3.30.1360.100 81 162 5.5E-9 T 15-10-2018 NJ56_02085 b8633ec80ab783ada9574efc627d01a0 164 Pfam PF04612 Type II secretion system (T2SS), protein M 2 156 2.8E-24 T 15-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 NJ56_02085 b8633ec80ab783ada9574efc627d01a0 164 SUPERFAMILY SSF103054 83 158 1.15E-11 T 15-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 Gene3D G3DSA:1.10.287.130 200 269 7.5E-24 T 15-10-2018 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 Pfam PF11808 Domain of unknown function (DUF3329) 6 91 1.8E-28 T 15-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 Pfam PF00512 His Kinase A (phospho-acceptor) domain 203 268 5.4E-19 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 Pfam PF00989 PAS fold 99 184 2.8E-7 T 15-10-2018 IPR013767 PAS fold GO:0006355 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 98 211 9.7E-8 T 15-10-2018 IPR000014 PAS domain NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 SUPERFAMILY SSF55785 87 195 5.23E-11 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 2.6E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 2.6E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 2.6E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 2.6E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 SMART SM00091 98 164 6.3E-7 T 15-10-2018 IPR000014 PAS domain NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 SMART SM00388 203 269 1.0E-22 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 96 420 1.3E-133 T 15-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 Gene3D G3DSA:3.30.450.20 86 199 3.2E-8 T 15-10-2018 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 423 2.7E-21 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 SUPERFAMILY SSF55874 259 423 8.25E-40 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 SMART SM00387 313 425 7.0E-33 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 SUPERFAMILY SSF47384 190 268 2.55E-20 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_01590 f4d416423224a9242ed245cb6347d5d2 438 Gene3D G3DSA:3.30.565.10 278 426 2.8E-35 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_17245 a15383f1f9bb35bf433e7492752984f4 371 Pfam PF00155 Aminotransferase class I and II 47 352 4.7E-62 T 15-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NJ56_17245 a15383f1f9bb35bf433e7492752984f4 371 SUPERFAMILY SSF53383 10 352 2.53E-78 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_17245 a15383f1f9bb35bf433e7492752984f4 371 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 12 352 1.1E-122 T 15-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 NJ56_17245 a15383f1f9bb35bf433e7492752984f4 371 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 212 221 - T 15-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 NJ56_17245 a15383f1f9bb35bf433e7492752984f4 371 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 10 356 54.199 T 15-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 NJ56_17245 a15383f1f9bb35bf433e7492752984f4 371 Gene3D G3DSA:3.40.640.10 55 259 5.3E-133 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_17245 a15383f1f9bb35bf433e7492752984f4 371 Gene3D G3DSA:3.90.1150.10 10 348 5.3E-133 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_17425 0472680fb15a3d3f63c5769a85b557fd 249 SUPERFAMILY SSF69572 3 248 1.7E-85 T 15-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 NJ56_17425 0472680fb15a3d3f63c5769a85b557fd 249 Pfam PF00899 ThiF family 12 244 4.8E-63 T 15-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 NJ56_17425 0472680fb15a3d3f63c5769a85b557fd 249 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 8 247 3.5E-125 T 15-10-2018 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 NJ56_17425 0472680fb15a3d3f63c5769a85b557fd 249 Gene3D G3DSA:3.40.50.720 4 249 1.5E-88 T 15-10-2018 NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 Gene3D G3DSA:3.30.1360.40 79 156 4.2E-30 T 15-10-2018 NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 153 2.0E-27 T 15-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 SUPERFAMILY SSF46785 3 77 8.98E-21 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 2.2E-23 T 15-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 2.2E-23 T 15-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 2.2E-23 T 15-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 2.2E-23 T 15-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 11 151 5.7E-46 T 15-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 58.999 T 15-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 74 6.4E-25 T 15-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 Gene3D G3DSA:1.10.10.10 1 78 1.1E-34 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 148 1.8E-21 T 15-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 NJ56_03905 26e3a3ea1623cf5374b761ab355605f9 156 SUPERFAMILY SSF55252 82 151 1.26E-18 T 15-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 NJ56_06225 a9ba603a3761f1048f7eb401ee7f4a99 206 Pfam PF02527 rRNA small subunit methyltransferase G 20 200 2.9E-61 T 15-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 NJ56_06225 a9ba603a3761f1048f7eb401ee7f4a99 206 PIRSF PIRSF003078 1 206 4.6E-62 T 15-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 NJ56_06225 a9ba603a3761f1048f7eb401ee7f4a99 206 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 13 202 28.759 T 15-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 NJ56_06225 a9ba603a3761f1048f7eb401ee7f4a99 206 SUPERFAMILY SSF53335 4 204 3.84E-42 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_06225 a9ba603a3761f1048f7eb401ee7f4a99 206 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 26 204 1.6E-57 T 15-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 NJ56_06225 a9ba603a3761f1048f7eb401ee7f4a99 206 Gene3D G3DSA:3.40.50.150 1 205 5.1E-71 T 15-10-2018 NJ56_05695 fa3c4b7bf8270e4c400feb7c5caf240f 342 Gene3D G3DSA:3.40.50.2300 69 314 5.6E-84 T 15-10-2018 NJ56_05695 fa3c4b7bf8270e4c400feb7c5caf240f 342 SUPERFAMILY SSF47413 8 67 2.91E-14 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_05695 fa3c4b7bf8270e4c400feb7c5caf240f 342 Pfam PF13377 Periplasmic binding protein-like domain 176 337 1.6E-41 T 15-10-2018 NJ56_05695 fa3c4b7bf8270e4c400feb7c5caf240f 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 55 4.2E-18 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_05695 fa3c4b7bf8270e4c400feb7c5caf240f 342 Gene3D G3DSA:1.10.260.40 1 67 1.4E-23 T 15-10-2018 NJ56_05695 fa3c4b7bf8270e4c400feb7c5caf240f 342 SMART SM00354 9 79 2.5E-28 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_05695 fa3c4b7bf8270e4c400feb7c5caf240f 342 Gene3D G3DSA:3.40.50.2300 168 297 5.6E-84 T 15-10-2018 NJ56_05695 fa3c4b7bf8270e4c400feb7c5caf240f 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 15-10-2018 NJ56_05695 fa3c4b7bf8270e4c400feb7c5caf240f 342 SUPERFAMILY SSF53822 68 340 1.43E-91 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_00770 9ef5d28cee013b7b1b8b058683531ec9 332 Pfam PF00072 Response regulator receiver domain 23 133 9.4E-31 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00770 9ef5d28cee013b7b1b8b058683531ec9 332 Gene3D G3DSA:3.40.50.2300 17 139 2.5E-38 T 15-10-2018 NJ56_00770 9ef5d28cee013b7b1b8b058683531ec9 332 SUPERFAMILY SSF52172 20 152 2.56E-39 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_00770 9ef5d28cee013b7b1b8b058683531ec9 332 Gene3D G3DSA:3.30.70.270 140 314 4.2E-54 T 15-10-2018 NJ56_00770 9ef5d28cee013b7b1b8b058683531ec9 332 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 149 312 2.9E-51 T 15-10-2018 IPR000160 GGDEF domain NJ56_00770 9ef5d28cee013b7b1b8b058683531ec9 332 SMART SM00448 21 133 1.1E-37 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00770 9ef5d28cee013b7b1b8b058683531ec9 332 Pfam PF00990 Diguanylate cyclase, GGDEF domain 151 311 6.8E-51 T 15-10-2018 IPR000160 GGDEF domain NJ56_00770 9ef5d28cee013b7b1b8b058683531ec9 332 SUPERFAMILY SSF55073 155 313 1.18E-45 T 15-10-2018 IPR029787 Nucleotide cyclase NJ56_00770 9ef5d28cee013b7b1b8b058683531ec9 332 SMART SM00267 139 315 6.4E-63 T 15-10-2018 IPR000160 GGDEF domain NJ56_06315 16d115de0b7283de968887e87150ef5c 278 SMART SM00062 34 257 7.6E-66 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_06315 16d115de0b7283de968887e87150ef5c 278 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 255 2.8E-58 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_06315 16d115de0b7283de968887e87150ef5c 278 SUPERFAMILY SSF53850 1 256 4.71E-67 T 15-10-2018 NJ56_06315 16d115de0b7283de968887e87150ef5c 278 Gene3D G3DSA:3.40.190.10 26 250 7.1E-64 T 15-10-2018 NJ56_06315 16d115de0b7283de968887e87150ef5c 278 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 15-10-2018 IPR018313 Solute-binding protein family 3, conserved site NJ56_06315 16d115de0b7283de968887e87150ef5c 278 Gene3D G3DSA:3.40.190.10 122 215 7.1E-64 T 15-10-2018 NJ56_07970 9eff844077ddbe7b2a9888e21d9947f0 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 83 96 1.7E-18 T 15-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 NJ56_07970 9eff844077ddbe7b2a9888e21d9947f0 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 100 114 1.7E-18 T 15-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 NJ56_07970 9eff844077ddbe7b2a9888e21d9947f0 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 115 128 1.7E-18 T 15-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 NJ56_07970 9eff844077ddbe7b2a9888e21d9947f0 154 SUPERFAMILY SSF51230 79 154 2.49E-26 T 15-10-2018 IPR011053 Single hybrid motif NJ56_07970 9eff844077ddbe7b2a9888e21d9947f0 154 Pfam PF00364 Biotin-requiring enzyme 81 153 2.1E-25 T 15-10-2018 IPR000089 Biotin/lipoyl attachment NJ56_07970 9eff844077ddbe7b2a9888e21d9947f0 154 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 154 4.1E-65 T 15-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 NJ56_07970 9eff844077ddbe7b2a9888e21d9947f0 154 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 110 127 - T 15-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 NJ56_07970 9eff844077ddbe7b2a9888e21d9947f0 154 Gene3D G3DSA:2.40.50.100 75 154 4.7E-32 T 15-10-2018 NJ56_02645 584f66d24b10d39a46cc64828d6bf9d4 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 15-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 NJ56_02645 584f66d24b10d39a46cc64828d6bf9d4 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 2.8E-198 T 15-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 NJ56_02645 584f66d24b10d39a46cc64828d6bf9d4 347 Gene3D G3DSA:3.20.20.70 1 345 1.4E-115 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_02645 584f66d24b10d39a46cc64828d6bf9d4 347 SMART SM01240 7 344 2.3E-139 T 15-10-2018 NJ56_02645 584f66d24b10d39a46cc64828d6bf9d4 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 6.3E-79 T 15-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 NJ56_02645 584f66d24b10d39a46cc64828d6bf9d4 347 Hamap MF_00596 GMP reductase [guaC]. 1 345 50.443 T 15-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 NJ56_02645 584f66d24b10d39a46cc64828d6bf9d4 347 PIRSF PIRSF000235 1 347 1.5E-198 T 15-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 NJ56_02645 584f66d24b10d39a46cc64828d6bf9d4 347 SUPERFAMILY SSF51412 7 335 6.02E-100 T 15-10-2018 NJ56_00335 11b367765b7250fb5a5d04520144be64 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 384 1.8E-181 T 15-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 NJ56_00335 11b367765b7250fb5a5d04520144be64 388 Pfam PF08442 ATP-grasp domain 2 203 1.5E-83 T 15-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 NJ56_00335 11b367765b7250fb5a5d04520144be64 388 SUPERFAMILY SSF52210 240 385 4.06E-52 T 15-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 NJ56_00335 11b367765b7250fb5a5d04520144be64 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 15-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 NJ56_00335 11b367765b7250fb5a5d04520144be64 388 Gene3D G3DSA:3.30.1490.20 21 104 4.6E-97 T 15-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 NJ56_00335 11b367765b7250fb5a5d04520144be64 388 Gene3D G3DSA:3.30.470.20 1 234 4.6E-97 T 15-10-2018 NJ56_00335 11b367765b7250fb5a5d04520144be64 388 Gene3D G3DSA:3.40.50.261 240 387 3.2E-55 T 15-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 NJ56_00335 11b367765b7250fb5a5d04520144be64 388 Pfam PF00549 CoA-ligase 262 382 3.7E-24 T 15-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 NJ56_00335 11b367765b7250fb5a5d04520144be64 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.346 T 15-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 NJ56_00335 11b367765b7250fb5a5d04520144be64 388 PIRSF PIRSF001554 1 388 1.4E-154 T 15-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 NJ56_00335 11b367765b7250fb5a5d04520144be64 388 SUPERFAMILY SSF56059 1 238 3.18E-81 T 15-10-2018 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 PRINTS PR00143 Citrate synthase signature 379 393 4.3E-56 T 15-10-2018 IPR002020 Citrate synthase GO:0046912 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 PRINTS PR00143 Citrate synthase signature 219 234 4.3E-56 T 15-10-2018 IPR002020 Citrate synthase GO:0046912 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 PRINTS PR00143 Citrate synthase signature 359 375 4.3E-56 T 15-10-2018 IPR002020 Citrate synthase GO:0046912 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 PRINTS PR00143 Citrate synthase signature 241 269 4.3E-56 T 15-10-2018 IPR002020 Citrate synthase GO:0046912 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 PRINTS PR00143 Citrate synthase signature 165 178 4.3E-56 T 15-10-2018 IPR002020 Citrate synthase GO:0046912 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 PRINTS PR00143 Citrate synthase signature 296 316 4.3E-56 T 15-10-2018 IPR002020 Citrate synthase GO:0046912 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 Gene3D G3DSA:1.10.580.10 57 410 1.0E-151 T 15-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 Pfam PF00285 Citrate synthase, C-terminal domain 46 410 8.7E-133 T 15-10-2018 IPR002020 Citrate synthase GO:0046912 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 SUPERFAMILY SSF48256 4 422 4.19E-167 T 15-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 14 421 5.3E-235 T 15-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 Gene3D G3DSA:2.20.28.60 1 50 7.3E-22 T 15-10-2018 NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 PIRSF PIRSF001369 38 427 1.2E-173 T 15-10-2018 IPR024176 Citrate synthase, bacterial-type NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 Gene3D G3DSA:1.10.230.10 268 376 1.0E-151 T 15-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain NJ56_00370 4b48d5c948638aca29c57ca0e4eff437 427 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 15-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 NJ56_09605 215bd1c1ada208d9eb999335b365be50 401 TIGRFAM TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA 4 401 5.6E-219 T 15-10-2018 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA GO:0016226|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 NJ56_09605 215bd1c1ada208d9eb999335b365be50 401 Gene3D G3DSA:3.40.640.10 34 292 3.3E-146 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_09605 215bd1c1ada208d9eb999335b365be50 401 SUPERFAMILY SSF53383 5 393 2.13E-107 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_09605 215bd1c1ada208d9eb999335b365be50 401 Gene3D G3DSA:3.90.1150.10 21 388 3.3E-146 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_09605 215bd1c1ada208d9eb999335b365be50 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 213 232 - T 15-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site NJ56_09605 215bd1c1ada208d9eb999335b365be50 401 Pfam PF00266 Aminotransferase class-V 21 388 1.2E-135 T 15-10-2018 IPR000192 Aminotransferase class V domain NJ56_05435 b430025e6702b7902d43e02bb9567fc5 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.1E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05435 b430025e6702b7902d43e02bb9567fc5 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.1E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05435 b430025e6702b7902d43e02bb9567fc5 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.1E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05435 b430025e6702b7902d43e02bb9567fc5 293 Gene3D G3DSA:3.40.190.10 91 291 8.0E-31 T 15-10-2018 NJ56_05435 b430025e6702b7902d43e02bb9567fc5 293 Gene3D G3DSA:3.40.190.10 165 269 8.0E-31 T 15-10-2018 NJ56_05435 b430025e6702b7902d43e02bb9567fc5 293 SUPERFAMILY SSF53850 89 293 1.19E-33 T 15-10-2018 NJ56_05435 b430025e6702b7902d43e02bb9567fc5 293 Gene3D G3DSA:1.10.10.10 1 83 2.6E-23 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_05435 b430025e6702b7902d43e02bb9567fc5 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 9.9E-20 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05435 b430025e6702b7902d43e02bb9567fc5 293 Pfam PF03466 LysR substrate binding domain 89 293 5.4E-39 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_05435 b430025e6702b7902d43e02bb9567fc5 293 SUPERFAMILY SSF46785 1 111 3.16E-22 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_00040 90a273da31dc58885422f6b45c0c298e 580 SMART SM00382 356 537 1.7E-14 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_00040 90a273da31dc58885422f6b45c0c298e 580 SMART SM00382 34 268 9.1E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_00040 90a273da31dc58885422f6b45c0c298e 580 SUPERFAMILY SSF52540 7 228 2.81E-52 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00040 90a273da31dc58885422f6b45c0c298e 580 SUPERFAMILY SSF52540 330 552 3.7E-62 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00040 90a273da31dc58885422f6b45c0c298e 580 Pfam PF00005 ABC transporter 348 491 8.4E-28 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_00040 90a273da31dc58885422f6b45c0c298e 580 Gene3D G3DSA:3.40.50.300 322 558 1.6E-64 T 15-10-2018 NJ56_00040 90a273da31dc58885422f6b45c0c298e 580 Gene3D G3DSA:3.40.50.300 1 240 3.3E-56 T 15-10-2018 NJ56_00040 90a273da31dc58885422f6b45c0c298e 580 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_00040 90a273da31dc58885422f6b45c0c298e 580 Pfam PF00005 ABC transporter 27 167 5.8E-26 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_15140 d08e3f02937b0d509f810e147d738ce5 207 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 2 189 1.6E-85 T 15-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 NJ56_15140 d08e3f02937b0d509f810e147d738ce5 207 SUPERFAMILY SSF54862 37 176 2.61E-31 T 15-10-2018 NJ56_15140 d08e3f02937b0d509f810e147d738ce5 207 Pfam PF14697 4Fe-4S dicluster domain 110 164 5.8E-17 T 15-10-2018 NJ56_15140 d08e3f02937b0d509f810e147d738ce5 207 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 169 25.6 T 15-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 NJ56_15140 d08e3f02937b0d509f810e147d738ce5 207 PIRSF PIRSF005784 3 191 2.6E-84 T 15-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 NJ56_15140 d08e3f02937b0d509f810e147d738ce5 207 Gene3D G3DSA:3.20.20.20 37 97 3.7E-11 T 15-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_15140 d08e3f02937b0d509f810e147d738ce5 207 Pfam PF04060 Putative Fe-S cluster 44 76 3.6E-13 T 15-10-2018 IPR007202 4Fe-4S domain GO:0051536 NJ56_15140 d08e3f02937b0d509f810e147d738ce5 207 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_15140 d08e3f02937b0d509f810e147d738ce5 207 Gene3D G3DSA:3.30.70.20 98 183 1.4E-19 T 15-10-2018 NJ56_11445 433c62161f3583f7175caec1cf905f7f 679 Gene3D G3DSA:3.30.9.10 352 574 4.1E-144 T 15-10-2018 NJ56_11445 433c62161f3583f7175caec1cf905f7f 679 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 118 244 3.3E-49 T 15-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 NJ56_11445 433c62161f3583f7175caec1cf905f7f 679 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 267 669 4.5E-157 T 15-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 NJ56_11445 433c62161f3583f7175caec1cf905f7f 679 Pfam PF01266 FAD dependent oxidoreductase 267 639 1.4E-52 T 15-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 NJ56_11445 433c62161f3583f7175caec1cf905f7f 679 Gene3D G3DSA:3.50.50.60 268 666 4.1E-144 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_11445 433c62161f3583f7175caec1cf905f7f 679 SUPERFAMILY SSF51905 267 668 2.78E-31 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_11445 433c62161f3583f7175caec1cf905f7f 679 Gene3D G3DSA:3.40.50.150 9 250 8.5E-112 T 15-10-2018 NJ56_11445 433c62161f3583f7175caec1cf905f7f 679 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 7 664 28.091 T 15-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 NJ56_17475 d31dbb1108708f6754998b8e9278dd74 218 Gene3D G3DSA:1.10.3720.10 1 216 1.1E-53 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17475 d31dbb1108708f6754998b8e9278dd74 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 110 7.5E-30 T 15-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 NJ56_17475 d31dbb1108708f6754998b8e9278dd74 218 SUPERFAMILY SSF161098 13 201 7.46E-44 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17475 d31dbb1108708f6754998b8e9278dd74 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 216 1.1E-21 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_06280 4fdfc06cd8dab0db8988a4a4978eecfd 456 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 403 431 - T 15-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 NJ56_06280 4fdfc06cd8dab0db8988a4a4978eecfd 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 300 2.4E-4 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_06280 4fdfc06cd8dab0db8988a4a4978eecfd 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 429 5.7E-7 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_06280 4fdfc06cd8dab0db8988a4a4978eecfd 456 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 455 9.2E-203 T 15-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 NJ56_06280 4fdfc06cd8dab0db8988a4a4978eecfd 456 SUPERFAMILY SSF53448 6 252 3.69E-66 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_06280 4fdfc06cd8dab0db8988a4a4978eecfd 456 SUPERFAMILY SSF51161 255 437 1.54E-52 T 15-10-2018 IPR011004 Trimeric LpxA-like superfamily NJ56_06280 4fdfc06cd8dab0db8988a4a4978eecfd 456 Pfam PF12804 MobA-like NTP transferase domain 8 121 2.2E-20 T 15-10-2018 IPR025877 MobA-like NTP transferase NJ56_06280 4fdfc06cd8dab0db8988a4a4978eecfd 456 Gene3D G3DSA:2.160.10.10 228 456 3.6E-72 T 15-10-2018 NJ56_06280 4fdfc06cd8dab0db8988a4a4978eecfd 456 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 5 452 42.856 T 15-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 NJ56_06280 4fdfc06cd8dab0db8988a4a4978eecfd 456 Gene3D G3DSA:3.90.550.10 1 227 6.6E-72 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_16045 a13c46a180fedb5b34ec513b2898a05b 315 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 314 6.2E-127 T 15-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 NJ56_16045 a13c46a180fedb5b34ec513b2898a05b 315 Gene3D G3DSA:3.40.50.2020 148 290 9.5E-137 T 15-10-2018 NJ56_16045 a13c46a180fedb5b34ec513b2898a05b 315 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 313 2.1E-30 T 15-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 NJ56_16045 a13c46a180fedb5b34ec513b2898a05b 315 SMART SM01400 4 121 5.7E-76 T 15-10-2018 NJ56_16045 a13c46a180fedb5b34ec513b2898a05b 315 SUPERFAMILY SSF53271 69 306 2.5E-67 T 15-10-2018 IPR029057 Phosphoribosyltransferase-like NJ56_16045 a13c46a180fedb5b34ec513b2898a05b 315 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 1.9E-49 T 15-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 NJ56_16045 a13c46a180fedb5b34ec513b2898a05b 315 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 15-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 NJ56_16045 a13c46a180fedb5b34ec513b2898a05b 315 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 314 49.844 T 15-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 NJ56_16045 a13c46a180fedb5b34ec513b2898a05b 315 Gene3D G3DSA:3.40.50.2020 7 302 9.5E-137 T 15-10-2018 NJ56_16195 d0743fa805007ea254fbc6ff9cac9fca 406 TIGRFAM TIGR01224 hutI: imidazolonepropionase 27 404 2.4E-155 T 15-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_16195 d0743fa805007ea254fbc6ff9cac9fca 406 Pfam PF01979 Amidohydrolase family 63 380 2.3E-17 T 15-10-2018 IPR006680 Amidohydrolase-related GO:0016787 NJ56_16195 d0743fa805007ea254fbc6ff9cac9fca 406 Gene3D G3DSA:2.30.40.10 14 402 3.2E-158 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_16195 d0743fa805007ea254fbc6ff9cac9fca 406 Hamap MF_00372 Imidazolonepropionase [hutI]. 8 405 41.66 T 15-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_16195 d0743fa805007ea254fbc6ff9cac9fca 406 Gene3D G3DSA:3.20.20.140 67 365 3.2E-158 T 15-10-2018 NJ56_16195 d0743fa805007ea254fbc6ff9cac9fca 406 SUPERFAMILY SSF51556 66 366 4.38E-83 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_16195 d0743fa805007ea254fbc6ff9cac9fca 406 SUPERFAMILY SSF51338 6 404 3.64E-25 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.1E-93 T 15-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.1E-93 T 15-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 1.1E-93 T 15-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 1.1E-93 T 15-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 1.1E-93 T 15-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 1.1E-93 T 15-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 1.1E-93 T 15-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 1.1E-93 T 15-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 641 4.0E-283 T 15-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 2.5E-60 T 15-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 631 644 2.5E-60 T 15-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 2.5E-60 T 15-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 2.5E-60 T 15-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 2.5E-60 T 15-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 2.5E-60 T 15-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 2.5E-60 T 15-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11355 c69409e926f04493268dd8963929f858 655 Pfam PF01578 Cytochrome C assembly protein 89 296 1.4E-54 T 15-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 NJ56_11355 c69409e926f04493268dd8963929f858 655 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 637 5.8E-131 T 15-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal NJ56_07480 c1ca87aaced6c0e7222f5c1f70ff2d28 129 SUPERFAMILY SSF53137 15 129 4.58E-48 T 15-10-2018 NJ56_07480 c1ca87aaced6c0e7222f5c1f70ff2d28 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 2.8E-55 T 15-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07480 c1ca87aaced6c0e7222f5c1f70ff2d28 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 7 129 32.637 T 15-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 NJ56_07480 c1ca87aaced6c0e7222f5c1f70ff2d28 129 Pfam PF00411 Ribosomal protein S11 19 128 1.6E-54 T 15-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 NJ56_07480 c1ca87aaced6c0e7222f5c1f70ff2d28 129 Gene3D G3DSA:3.30.420.80 1 129 1.5E-58 T 15-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 NJ56_07480 c1ca87aaced6c0e7222f5c1f70ff2d28 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 15-10-2018 IPR018102 Ribosomal S11, conserved site NJ56_07480 c1ca87aaced6c0e7222f5c1f70ff2d28 129 PIRSF PIRSF002131 1 129 1.1E-52 T 15-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 NJ56_14470 8e3e220417034e952057365401430b6b 138 SUPERFAMILY SSF82649 3 136 4.24E-47 T 15-10-2018 NJ56_14470 8e3e220417034e952057365401430b6b 138 Gene3D G3DSA:3.90.1010.10 1 138 1.1E-53 T 15-10-2018 NJ56_14470 8e3e220417034e952057365401430b6b 138 Hamap MF_01832 Cysteine desulfuration protein SufE [sufE]. 1 138 42.063 T 15-10-2018 IPR023939 Cysteine desulfuration protein SufE GO:0006790|GO:0016226 NJ56_14470 8e3e220417034e952057365401430b6b 138 Pfam PF02657 Fe-S metabolism associated domain 12 132 6.3E-45 T 15-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like NJ56_14050 fd86247fdd7bc72504baa9f47638c97d 381 Gene3D G3DSA:3.40.710.10 22 380 1.6E-135 T 15-10-2018 NJ56_14050 fd86247fdd7bc72504baa9f47638c97d 381 ProSitePatterns PS00336 Beta-lactamase class-C active site. 80 87 - T 15-10-2018 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 NJ56_14050 fd86247fdd7bc72504baa9f47638c97d 381 SUPERFAMILY SSF56601 26 380 4.73E-103 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_14050 fd86247fdd7bc72504baa9f47638c97d 381 Pfam PF00144 Beta-lactamase 32 380 1.2E-84 T 15-10-2018 IPR001466 Beta-lactamase-related NJ56_16375 be0f40e1e8fc4b63e61f84bf828633d5 371 Gene3D G3DSA:3.40.50.620 1 213 1.3E-96 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_16375 be0f40e1e8fc4b63e61f84bf828633d5 371 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 361 9.2E-156 T 15-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 NJ56_16375 be0f40e1e8fc4b63e61f84bf828633d5 371 Gene3D G3DSA:2.40.30.10 283 369 1.5E-32 T 15-10-2018 NJ56_16375 be0f40e1e8fc4b63e61f84bf828633d5 371 SUPERFAMILY SSF52402 5 245 2.14E-56 T 15-10-2018 NJ56_16375 be0f40e1e8fc4b63e61f84bf828633d5 371 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 362 40.686 T 15-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 NJ56_16375 be0f40e1e8fc4b63e61f84bf828633d5 371 Pfam PF03054 tRNA methyl transferase 7 361 7.1E-143 T 15-10-2018 NJ56_16375 be0f40e1e8fc4b63e61f84bf828633d5 371 Gene3D G3DSA:2.30.30.280 214 282 6.0E-28 T 15-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 NJ56_07820 4659fd052464bde1c909b422865b29d8 167 Pfam PF04345 Chorismate lyase 14 166 2.3E-32 T 15-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 NJ56_07820 4659fd052464bde1c909b422865b29d8 167 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 12 166 26.037 T 15-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 NJ56_07820 4659fd052464bde1c909b422865b29d8 167 SUPERFAMILY SSF64288 8 166 2.47E-50 T 15-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily NJ56_07820 4659fd052464bde1c909b422865b29d8 167 Gene3D G3DSA:3.40.1410.10 5 166 3.8E-51 T 15-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily NJ56_08255 aa6e25880457ff87d33c62eb58254502 142 PIRSF PIRSF002181 1 142 3.6E-51 T 15-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 NJ56_08255 aa6e25880457ff87d33c62eb58254502 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 2.0E-67 T 15-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_08255 aa6e25880457ff87d33c62eb58254502 142 Gene3D G3DSA:3.90.1180.10 1 142 1.0E-64 T 15-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 NJ56_08255 aa6e25880457ff87d33c62eb58254502 142 Pfam PF00572 Ribosomal protein L13 15 138 2.2E-56 T 15-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 NJ56_08255 aa6e25880457ff87d33c62eb58254502 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 15-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 NJ56_08255 aa6e25880457ff87d33c62eb58254502 142 SUPERFAMILY SSF52161 1 140 3.27E-60 T 15-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 NJ56_08255 aa6e25880457ff87d33c62eb58254502 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.577 T 15-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 Gene3D G3DSA:1.10.1440.20 592 651 7.9E-18 T 15-10-2018 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 PRINTS PR00415 Aconitase family signature 431 442 2.8E-44 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 PRINTS PR00415 Aconitase family signature 372 386 2.8E-44 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 PRINTS PR00415 Aconitase family signature 493 506 2.8E-44 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 PRINTS PR00415 Aconitase family signature 279 292 2.8E-44 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 PRINTS PR00415 Aconitase family signature 170 178 2.8E-44 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 PRINTS PR00415 Aconitase family signature 146 159 2.8E-44 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 PRINTS PR00415 Aconitase family signature 217 232 2.8E-44 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 PRINTS PR00415 Aconitase family signature 293 306 2.8E-44 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 PRINTS PR00415 Aconitase family signature 203 216 2.8E-44 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 SUPERFAMILY SSF52016 630 890 6.08E-89 T 15-10-2018 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 ProSitePatterns PS00450 Aconitase family signature 1. 427 443 - T 15-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 Pfam PF00330 Aconitase family (aconitate hydratase) 74 562 8.0E-182 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 Gene3D G3DSA:3.30.499.20 6 372 8.5E-160 T 15-10-2018 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 19 890 0.0 T 15-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 ProSitePatterns PS01244 Aconitase family signature 2. 493 506 - T 15-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 Pfam PF00694 Aconitase C-terminal domain 691 817 2.2E-49 T 15-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 Gene3D G3DSA:3.20.19.10 652 890 3.8E-105 T 15-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 Gene3D G3DSA:3.30.499.10 373 590 2.7E-99 T 15-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 NJ56_15235 38c810976e1cf6b0c5705484ccfe3c80 890 SUPERFAMILY SSF53732 10 626 2.35E-223 T 15-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 NJ56_05050 df77bf491c00146d16024947d8cc2ed3 233 Gene3D G3DSA:3.40.50.300 1 233 6.4E-64 T 15-10-2018 NJ56_05050 df77bf491c00146d16024947d8cc2ed3 233 SUPERFAMILY SSF52540 2 230 2.66E-59 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05050 df77bf491c00146d16024947d8cc2ed3 233 PIRSF PIRSF039137 1 233 1.1E-101 T 15-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 NJ56_05050 df77bf491c00146d16024947d8cc2ed3 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_05050 df77bf491c00146d16024947d8cc2ed3 233 SMART SM00382 26 212 6.8E-6 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_05050 df77bf491c00146d16024947d8cc2ed3 233 Pfam PF00005 ABC transporter 17 161 7.5E-34 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_15945 dbb083512a52e6a0f1b5e35d17b42ca6 401 Pfam PF07690 Major Facilitator Superfamily 20 241 3.9E-23 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_15945 dbb083512a52e6a0f1b5e35d17b42ca6 401 Hamap MF_01529 Multidrug resistance protein MdtH [mdtH]. 1 401 40.851 T 15-10-2018 IPR022855 Multidrug resistance protein MdtH NJ56_15945 dbb083512a52e6a0f1b5e35d17b42ca6 401 Gene3D G3DSA:1.20.1250.20 13 386 8.9E-47 T 15-10-2018 NJ56_15945 dbb083512a52e6a0f1b5e35d17b42ca6 401 SUPERFAMILY SSF103473 14 391 2.09E-52 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_04690 bc03354f950faa8631e852883260692d 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 3.6E-32 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_04690 bc03354f950faa8631e852883260692d 90 SUPERFAMILY SSF47729 1 90 1.09E-32 T 15-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 NJ56_04690 bc03354f950faa8631e852883260692d 90 Gene3D G3DSA:4.10.520.10 1 90 6.5E-37 T 15-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 NJ56_04690 bc03354f950faa8631e852883260692d 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 15-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 NJ56_04690 bc03354f950faa8631e852883260692d 90 SMART SM00411 1 90 1.0E-42 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_04690 bc03354f950faa8631e852883260692d 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.6E-19 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_04690 bc03354f950faa8631e852883260692d 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.6E-19 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_04690 bc03354f950faa8631e852883260692d 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.6E-19 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 PRINTS PR00097 Anthranilate synthase component II signature 168 181 5.1E-37 T 15-10-2018 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 PRINTS PR00097 Anthranilate synthase component II signature 47 56 5.1E-37 T 15-10-2018 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 PRINTS PR00097 Anthranilate synthase component II signature 2 16 5.1E-37 T 15-10-2018 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 PRINTS PR00097 Anthranilate synthase component II signature 74 85 5.1E-37 T 15-10-2018 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 PRINTS PR00097 Anthranilate synthase component II signature 99 107 5.1E-37 T 15-10-2018 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 PRINTS PR00097 Anthranilate synthase component II signature 119 131 5.1E-37 T 15-10-2018 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 9.2E-6 T 15-10-2018 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 9.2E-6 T 15-10-2018 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 SUPERFAMILY SSF52317 1 190 2.29E-54 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 190 1.1E-93 T 15-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 Gene3D G3DSA:3.40.50.880 1 191 2.2E-61 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 7.5E-14 T 15-10-2018 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 7.5E-14 T 15-10-2018 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 7.5E-14 T 15-10-2018 NJ56_07190 81bfff2e8f6e60973ae4dc29cadddd2a 191 Pfam PF00117 Glutamine amidotransferase class-I 3 189 9.4E-56 T 15-10-2018 IPR017926 Glutamine amidotransferase NJ56_14130 422ffe5f818ef42dd4eb015f92d6dcec 679 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 535 668 4.9E-40 T 15-10-2018 IPR020992 Tail specific protease, C-terminal NJ56_14130 422ffe5f818ef42dd4eb015f92d6dcec 679 Gene3D G3DSA:2.30.42.10 247 339 4.3E-16 T 15-10-2018 NJ56_14130 422ffe5f818ef42dd4eb015f92d6dcec 679 SMART SM00245 327 532 6.7E-78 T 15-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 NJ56_14130 422ffe5f818ef42dd4eb015f92d6dcec 679 SUPERFAMILY SSF52096 168 536 1.52E-69 T 15-10-2018 IPR029045 ClpP/crotonase-like domain superfamily NJ56_14130 422ffe5f818ef42dd4eb015f92d6dcec 679 Pfam PF03572 Peptidase family S41 357 530 1.5E-52 T 15-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 NJ56_14130 422ffe5f818ef42dd4eb015f92d6dcec 679 SUPERFAMILY SSF50156 217 346 1.01E-16 T 15-10-2018 IPR036034 PDZ superfamily GO:0005515 NJ56_14130 422ffe5f818ef42dd4eb015f92d6dcec 679 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 199 552 5.0E-124 T 15-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 NJ56_14130 422ffe5f818ef42dd4eb015f92d6dcec 679 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 241 321 7.6E-14 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_14130 422ffe5f818ef42dd4eb015f92d6dcec 679 SMART SM00228 247 324 2.4E-8 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_14130 422ffe5f818ef42dd4eb015f92d6dcec 679 Gene3D G3DSA:3.90.226.10 340 546 4.5E-51 T 15-10-2018 NJ56_12585 ca811d6090bc8c2ee678fd69c38c4784 95 Gene3D G3DSA:1.10.260.40 1 94 1.8E-17 T 15-10-2018 NJ56_12585 ca811d6090bc8c2ee678fd69c38c4784 95 SMART SM00530 5 64 1.5E-5 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_12585 ca811d6090bc8c2ee678fd69c38c4784 95 SUPERFAMILY SSF47413 2 70 3.94E-10 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_11135 f1fc95e979b8e9206a9d2ed0df2685a8 293 Gene3D G3DSA:3.40.50.1100 35 140 5.8E-113 T 15-10-2018 NJ56_11135 f1fc95e979b8e9206a9d2ed0df2685a8 293 TIGRFAM TIGR01136 cysKM: cysteine synthase 5 292 1.3E-122 T 15-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 NJ56_11135 f1fc95e979b8e9206a9d2ed0df2685a8 293 SUPERFAMILY SSF53686 4 290 7.2E-91 T 15-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NJ56_11135 f1fc95e979b8e9206a9d2ed0df2685a8 293 TIGRFAM TIGR01138 cysM: cysteine synthase B 3 292 2.4E-152 T 15-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 NJ56_11135 f1fc95e979b8e9206a9d2ed0df2685a8 293 Gene3D G3DSA:3.40.50.1100 8 288 5.8E-113 T 15-10-2018 NJ56_11135 f1fc95e979b8e9206a9d2ed0df2685a8 293 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 5 281 1.4E-66 T 15-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme NJ56_11135 f1fc95e979b8e9206a9d2ed0df2685a8 293 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 30 48 - T 15-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 304 329 3.0E-73 T 15-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 148 171 3.0E-73 T 15-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 64 90 3.0E-73 T 15-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 179 202 3.0E-73 T 15-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 205 232 3.0E-73 T 15-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 27 54 3.0E-73 T 15-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 Gene3D G3DSA:3.30.540.10 1 195 2.0E-74 T 15-10-2018 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 PIRSF PIRSF000904 1 331 7.1E-123 T 15-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 Gene3D G3DSA:3.40.190.80 197 333 1.8E-58 T 15-10-2018 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 3 194 2.5E-79 T 15-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 270 282 - T 15-10-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 SUPERFAMILY SSF56655 2 327 1.69E-111 T 15-10-2018 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 PIRSF PIRSF500210 1 331 4.8E-126 T 15-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 NJ56_03915 c8f2ccc5dbd1db365313d68eab9a730b 333 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 2 330 42.258 T 15-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 NJ56_12930 0c195d79188a36646e906ca35894144e 219 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 84 217 4.6E-40 T 15-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal NJ56_12930 0c195d79188a36646e906ca35894144e 219 Pfam PF13144 Chaperone for flagella basal body P-ring formation 27 217 4.9E-47 T 15-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal NJ56_12930 0c195d79188a36646e906ca35894144e 219 Gene3D G3DSA:2.30.30.760 160 219 7.7E-25 T 15-10-2018 NJ56_12930 0c195d79188a36646e906ca35894144e 219 SMART SM00858 95 157 3.7E-9 T 15-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 NJ56_06030 4eb7f24e6ff357e734b512d8426759b5 307 Gene3D G3DSA:3.10.129.10 147 299 7.8E-46 T 15-10-2018 NJ56_06030 4eb7f24e6ff357e734b512d8426759b5 307 Pfam PF00583 Acetyltransferase (GNAT) family 21 122 1.2E-13 T 15-10-2018 IPR000182 GNAT domain NJ56_06030 4eb7f24e6ff357e734b512d8426759b5 307 SUPERFAMILY SSF54637 155 297 1.16E-42 T 15-10-2018 IPR029069 HotDog domain superfamily NJ56_06030 4eb7f24e6ff357e734b512d8426759b5 307 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 165 298 8.6E-50 T 15-10-2018 IPR012660 Thioesterase, putative NJ56_06030 4eb7f24e6ff357e734b512d8426759b5 307 Gene3D G3DSA:3.40.630.30 3 145 1.8E-24 T 15-10-2018 NJ56_06030 4eb7f24e6ff357e734b512d8426759b5 307 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 158 297 4.1E-50 T 15-10-2018 IPR012660 Thioesterase, putative NJ56_06030 4eb7f24e6ff357e734b512d8426759b5 307 SUPERFAMILY SSF55729 2 170 3.43E-27 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_15830 0dc8fe0733a9e1a4c65ac5f669d250eb 261 Pfam PF00950 ABC 3 transport family 1 255 1.5E-84 T 15-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 NJ56_15830 0dc8fe0733a9e1a4c65ac5f669d250eb 261 Gene3D G3DSA:1.10.3470.10 30 260 3.1E-11 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_15830 0dc8fe0733a9e1a4c65ac5f669d250eb 261 SUPERFAMILY SSF81345 3 255 3.53E-41 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 1.0E-95 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 504 1.0E-135 T 15-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 SUPERFAMILY SSF81442 43 560 3.27E-179 T 15-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 Gene3D G3DSA:1.20.210.10 30 565 4.9E-190 T 15-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 15-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 NJ56_01420 c022cfa42bc07b171956a7840ab5b77d 663 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 15-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_11025 a94b43ec5f1171deabbddaa60b18bf50 907 Pfam PF07751 Abi-like protein 9 121 6.8E-5 T 15-10-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like NJ56_11025 a94b43ec5f1171deabbddaa60b18bf50 907 Gene3D G3DSA:2.40.50.140 841 907 3.9E-6 T 15-10-2018 NJ56_11025 a94b43ec5f1171deabbddaa60b18bf50 907 Gene3D G3DSA:3.40.50.300 172 348 3.9E-19 T 15-10-2018 NJ56_11025 a94b43ec5f1171deabbddaa60b18bf50 907 SUPERFAMILY SSF48452 567 741 4.24E-14 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_11025 a94b43ec5f1171deabbddaa60b18bf50 907 Gene3D G3DSA:1.25.40.10 471 770 4.3E-16 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_11025 a94b43ec5f1171deabbddaa60b18bf50 907 SUPERFAMILY SSF52540 185 447 3.5E-22 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_11025 a94b43ec5f1171deabbddaa60b18bf50 907 Pfam PF00931 NB-ARC domain 201 344 2.0E-9 T 15-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 NJ56_04215 117e47024fc376ffee93792a445558c5 244 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 101 118 - T 15-10-2018 IPR018046 Pili assembly chaperone, conserved site NJ56_04215 117e47024fc376ffee93792a445558c5 244 Gene3D G3DSA:2.60.40.10 147 237 3.9E-17 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_04215 117e47024fc376ffee93792a445558c5 244 Gene3D G3DSA:2.60.40.10 27 143 2.1E-39 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_04215 117e47024fc376ffee93792a445558c5 244 SUPERFAMILY SSF49354 22 142 4.3E-39 T 15-10-2018 IPR008962 PapD-like superfamily NJ56_04215 117e47024fc376ffee93792a445558c5 244 PRINTS PR00969 Pili chaperone signature 28 37 2.9E-31 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_04215 117e47024fc376ffee93792a445558c5 244 PRINTS PR00969 Pili chaperone signature 73 94 2.9E-31 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_04215 117e47024fc376ffee93792a445558c5 244 PRINTS PR00969 Pili chaperone signature 161 176 2.9E-31 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_04215 117e47024fc376ffee93792a445558c5 244 PRINTS PR00969 Pili chaperone signature 125 140 2.9E-31 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_04215 117e47024fc376ffee93792a445558c5 244 PRINTS PR00969 Pili chaperone signature 102 119 2.9E-31 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_04215 117e47024fc376ffee93792a445558c5 244 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 166 225 5.1E-11 T 15-10-2018 IPR016148 Pili assembly chaperone, C-terminal NJ56_04215 117e47024fc376ffee93792a445558c5 244 SUPERFAMILY SSF49584 150 237 5.23E-17 T 15-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily NJ56_04215 117e47024fc376ffee93792a445558c5 244 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 28 143 6.6E-40 T 15-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 NJ56_14815 b5cc8066bae38792d45f9183620ace4b 330 Gene3D G3DSA:3.40.50.720 102 297 2.5E-138 T 15-10-2018 NJ56_14815 b5cc8066bae38792d45f9183620ace4b 330 SUPERFAMILY SSF52283 2 135 3.97E-43 T 15-10-2018 NJ56_14815 b5cc8066bae38792d45f9183620ace4b 330 SUPERFAMILY SSF51735 102 298 1.29E-56 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_14815 b5cc8066bae38792d45f9183620ace4b 330 Gene3D G3DSA:3.40.50.720 2 317 2.5E-138 T 15-10-2018 NJ56_14815 b5cc8066bae38792d45f9183620ace4b 330 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 15-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site NJ56_14815 b5cc8066bae38792d45f9183620ace4b 330 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 15-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 NJ56_14815 b5cc8066bae38792d45f9183620ace4b 330 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 329 8.8E-32 T 15-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 NJ56_14815 b5cc8066bae38792d45f9183620ace4b 330 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 2.2E-54 T 15-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 NJ56_14815 b5cc8066bae38792d45f9183620ace4b 330 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 15-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Gene3D G3DSA:3.40.50.300 475 987 3.4E-235 T 15-10-2018 NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 SUPERFAMILY SSF143517 992 1143 1.7E-41 T 15-10-2018 IPR037235 TRCF-like, C-terminal domain NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 SMART SM01058 476 573 1.5E-52 T 15-10-2018 IPR003711 CarD-like/TRCF domain NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Gene3D G3DSA:2.30.30.840 480 538 3.4E-235 T 15-10-2018 NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Gene3D G3DSA:3.30.2060.10 128 213 1.9E-127 T 15-10-2018 NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 SUPERFAMILY SSF52540 520 780 2.23E-64 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Pfam PF00270 DEAD/DEAH box helicase 602 762 3.4E-19 T 15-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Gene3D G3DSA:3.90.1150.50 1001 1148 9.6E-45 T 15-10-2018 IPR037235 TRCF-like, C-terminal domain NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 145 1079 0.0 T 15-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Pfam PF00271 Helicase conserved C-terminal domain 802 906 8.2E-18 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Gene3D G3DSA:3.40.50.11180 24 333 1.9E-127 T 15-10-2018 NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 SMART SM00487 597 787 8.6E-33 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 SUPERFAMILY SSF52540 10 341 1.33E-102 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 SMART SM00982 1005 1105 6.9E-44 T 15-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Pfam PF02559 CarD-like/TRCF domain 477 572 1.5E-25 T 15-10-2018 IPR003711 CarD-like/TRCF domain NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 SUPERFAMILY SSF52540 779 987 5.32E-49 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Pfam PF03461 TRCF domain 1006 1097 4.2E-25 T 15-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 32 1144 27.71 T 15-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 SUPERFAMILY SSF141259 468 545 3.27E-24 T 15-10-2018 IPR036101 CarD-like/TRCF domain superfamily NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 SMART SM00490 823 907 6.1E-19 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Gene3D G3DSA:3.40.50.11140 354 450 4.3E-36 T 15-10-2018 NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 SUPERFAMILY SSF52540 351 463 3.08E-28 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16445 8ced4436f2b11b38bf10f8270046123b 1148 Gene3D G3DSA:3.40.50.300 539 778 3.4E-235 T 15-10-2018 NJ56_09395 a92f20dc9970698f8f15b7105ca4177c 149 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 10 139 4.2E-51 T 15-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 NJ56_09395 a92f20dc9970698f8f15b7105ca4177c 149 Pfam PF08334 Type II secretion system (T2SS), protein G 33 139 3.3E-31 T 15-10-2018 IPR013545 Type II secretion system protein G NJ56_09395 a92f20dc9970698f8f15b7105ca4177c 149 SUPERFAMILY SSF54523 38 141 2.25E-34 T 15-10-2018 NJ56_09395 a92f20dc9970698f8f15b7105ca4177c 149 Gene3D G3DSA:3.30.700.10 24 139 1.4E-33 T 15-10-2018 NJ56_09395 a92f20dc9970698f8f15b7105ca4177c 149 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 29 7.1E-7 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_09395 a92f20dc9970698f8f15b7105ca4177c 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 10 35 3.5E-21 T 15-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 NJ56_09395 a92f20dc9970698f8f15b7105ca4177c 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 46 64 3.5E-21 T 15-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 NJ56_09395 a92f20dc9970698f8f15b7105ca4177c 149 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 30 1.5E-7 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_11810 bafda2b61ab4c809a5a2309926a8a89f 167 Gene3D G3DSA:2.60.40.550 21 167 1.9E-58 T 15-10-2018 NJ56_11810 bafda2b61ab4c809a5a2309926a8a89f 167 Hamap MF_00706 Ecotin [eco]. 4 167 35.478 T 15-10-2018 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria NJ56_11810 bafda2b61ab4c809a5a2309926a8a89f 167 Pfam PF03974 Ecotin 35 157 9.0E-49 T 15-10-2018 IPR005658 Proteinase inhibitor I11, ecotin NJ56_11810 bafda2b61ab4c809a5a2309926a8a89f 167 PIRSF PIRSF006865 1 167 5.0E-61 T 15-10-2018 IPR005658 Proteinase inhibitor I11, ecotin NJ56_11810 bafda2b61ab4c809a5a2309926a8a89f 167 SUPERFAMILY SSF49772 31 166 5.1E-53 T 15-10-2018 IPR036198 Ecotin superfamily NJ56_06975 e057f1e5267b672d37a6af77872831f1 260 Gene3D G3DSA:3.40.50.1820 1 254 7.7E-75 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_06975 e057f1e5267b672d37a6af77872831f1 260 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 10 252 5.1E-104 T 15-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 NJ56_06975 e057f1e5267b672d37a6af77872831f1 260 SUPERFAMILY SSF53474 3 252 1.14E-49 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_06975 e057f1e5267b672d37a6af77872831f1 260 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 4 254 46.417 T 15-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 NJ56_06975 e057f1e5267b672d37a6af77872831f1 260 Pfam PF00561 alpha/beta hydrolase fold 16 242 1.0E-23 T 15-10-2018 IPR000073 Alpha/beta hydrolase fold-1 NJ56_06770 1f71a7054a891f928760c84586fa8200 258 Gene3D G3DSA:3.20.20.450 20 253 2.7E-35 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_06770 1f71a7054a891f928760c84586fa8200 258 SMART SM00052 5 248 4.3E-11 T 15-10-2018 IPR001633 EAL domain NJ56_06770 1f71a7054a891f928760c84586fa8200 258 Pfam PF00563 EAL domain 27 243 1.8E-27 T 15-10-2018 IPR001633 EAL domain NJ56_06770 1f71a7054a891f928760c84586fa8200 258 SUPERFAMILY SSF141868 26 252 2.75E-30 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_06250 db3b73667296d9f3cef5f1dfddafc2fb 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 15-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06250 db3b73667296d9f3cef5f1dfddafc2fb 177 SUPERFAMILY SSF47928 3 104 3.01E-26 T 15-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06250 db3b73667296d9f3cef5f1dfddafc2fb 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 174 1.7E-49 T 15-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06250 db3b73667296d9f3cef5f1dfddafc2fb 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.705 T 15-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06250 db3b73667296d9f3cef5f1dfddafc2fb 177 Gene3D G3DSA:1.10.520.20 2 106 9.3E-37 T 15-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06250 db3b73667296d9f3cef5f1dfddafc2fb 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 6.1E-62 T 15-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06250 db3b73667296d9f3cef5f1dfddafc2fb 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.8E-28 T 15-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06250 db3b73667296d9f3cef5f1dfddafc2fb 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.8E-28 T 15-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06250 db3b73667296d9f3cef5f1dfddafc2fb 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.8E-28 T 15-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06250 db3b73667296d9f3cef5f1dfddafc2fb 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 1.8E-28 T 15-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06250 db3b73667296d9f3cef5f1dfddafc2fb 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 1.8E-28 T 15-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_13995 c51324eae33a91e1c45bc816fb331337 102 PIRSF PIRSF029143 1 102 8.3E-48 T 15-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 NJ56_13995 c51324eae33a91e1c45bc816fb331337 102 Pfam PF04266 ASCH domain 5 95 1.1E-14 T 15-10-2018 IPR007374 ASCH domain NJ56_13995 c51324eae33a91e1c45bc816fb331337 102 Hamap MF_00684 UPF0267 protein YqfB [yqfB]. 1 102 31.137 T 15-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 NJ56_13995 c51324eae33a91e1c45bc816fb331337 102 SMART SM01022 5 101 1.8E-26 T 15-10-2018 IPR007374 ASCH domain NJ56_13995 c51324eae33a91e1c45bc816fb331337 102 SUPERFAMILY SSF88697 2 100 4.97E-33 T 15-10-2018 IPR015947 PUA-like superfamily NJ56_13995 c51324eae33a91e1c45bc816fb331337 102 Gene3D G3DSA:2.30.130.30 1 102 6.2E-43 T 15-10-2018 NJ56_08270 e29a4cd0d4a138463209c39177307d3c 169 PIRSF PIRSF005276 3 169 6.6E-60 T 15-10-2018 IPR007481 Stringent starvation protein B NJ56_08270 e29a4cd0d4a138463209c39177307d3c 169 Gene3D G3DSA:2.30.30.220 3 128 3.3E-51 T 15-10-2018 IPR036760 SspB-like superfamily NJ56_08270 e29a4cd0d4a138463209c39177307d3c 169 SUPERFAMILY SSF101738 3 112 6.41E-49 T 15-10-2018 IPR036760 SspB-like superfamily NJ56_08270 e29a4cd0d4a138463209c39177307d3c 169 Pfam PF04386 Stringent starvation protein B 9 169 4.9E-41 T 15-10-2018 IPR007481 Stringent starvation protein B NJ56_02565 2cf70e041a7cc61b481a18d23f7074ff 298 SUPERFAMILY SSF103481 45 139 1.26E-7 T 15-10-2018 NJ56_02565 2cf70e041a7cc61b481a18d23f7074ff 298 Pfam PF00892 EamA-like transporter family 158 284 7.2E-12 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_02565 2cf70e041a7cc61b481a18d23f7074ff 298 SUPERFAMILY SSF103481 190 290 7.72E-11 T 15-10-2018 NJ56_16110 f38da203219a42da558bc47a4a4798ba 198 Gene3D G3DSA:3.30.70.20 82 197 3.3E-9 T 15-10-2018 NJ56_16110 f38da203219a42da558bc47a4a4798ba 198 Gene3D G3DSA:3.30.70.20 9 81 3.9E-11 T 15-10-2018 NJ56_16110 f38da203219a42da558bc47a4a4798ba 198 SUPERFAMILY SSF54862 8 176 3.03E-35 T 15-10-2018 NJ56_16110 f38da203219a42da558bc47a4a4798ba 198 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 88 99 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_16110 f38da203219a42da558bc47a4a4798ba 198 Pfam PF00037 4Fe-4S binding domain 83 104 1.6E-6 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_17405 f38d1dfe4ba2feea1548d8d4ead6b815 372 Pfam PF00107 Zinc-binding dehydrogenase 198 323 1.7E-23 T 15-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 NJ56_17405 f38d1dfe4ba2feea1548d8d4ead6b815 372 SMART SM00829 11 368 1.5E-4 T 15-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 NJ56_17405 f38d1dfe4ba2feea1548d8d4ead6b815 372 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 370 1.2E-225 T 15-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 NJ56_17405 f38d1dfe4ba2feea1548d8d4ead6b815 372 SUPERFAMILY SSF50129 319 370 4.47E-13 T 15-10-2018 IPR011032 GroES-like superfamily NJ56_17405 f38d1dfe4ba2feea1548d8d4ead6b815 372 Gene3D G3DSA:3.40.50.720 175 313 6.4E-156 T 15-10-2018 NJ56_17405 f38d1dfe4ba2feea1548d8d4ead6b815 372 SUPERFAMILY SSF51735 161 335 4.59E-48 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_17405 f38d1dfe4ba2feea1548d8d4ead6b815 372 SUPERFAMILY SSF50129 1 187 1.83E-74 T 15-10-2018 IPR011032 GroES-like superfamily NJ56_17405 f38d1dfe4ba2feea1548d8d4ead6b815 372 Gene3D G3DSA:3.90.180.10 7 365 6.4E-156 T 15-10-2018 NJ56_17405 f38d1dfe4ba2feea1548d8d4ead6b815 372 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 127 1.3E-25 T 15-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 NJ56_17405 f38d1dfe4ba2feea1548d8d4ead6b815 372 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 15-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 NJ56_06445 ac445a8c0a291c557d2d2864afdc8e01 219 Gene3D G3DSA:3.30.1330.60 79 219 1.1E-51 T 15-10-2018 IPR036737 OmpA-like domain superfamily NJ56_06445 ac445a8c0a291c557d2d2864afdc8e01 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 161 178 2.7E-6 T 15-10-2018 NJ56_06445 ac445a8c0a291c557d2d2864afdc8e01 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 199 219 2.7E-6 T 15-10-2018 NJ56_06445 ac445a8c0a291c557d2d2864afdc8e01 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 132 158 2.7E-6 T 15-10-2018 NJ56_06445 ac445a8c0a291c557d2d2864afdc8e01 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 179 198 2.7E-6 T 15-10-2018 NJ56_06445 ac445a8c0a291c557d2d2864afdc8e01 219 Pfam PF13488 Glycine zipper 38 85 4.8E-11 T 15-10-2018 IPR039567 Glycine zipper domain NJ56_06445 ac445a8c0a291c557d2d2864afdc8e01 219 PRINTS PR01021 OMPA domain signature 146 161 8.8E-13 T 15-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NJ56_06445 ac445a8c0a291c557d2d2864afdc8e01 219 PRINTS PR01021 OMPA domain signature 116 138 8.8E-13 T 15-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NJ56_06445 ac445a8c0a291c557d2d2864afdc8e01 219 PRINTS PR01021 OMPA domain signature 161 177 8.8E-13 T 15-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NJ56_06445 ac445a8c0a291c557d2d2864afdc8e01 219 SUPERFAMILY SSF103088 103 218 1.1E-36 T 15-10-2018 IPR036737 OmpA-like domain superfamily NJ56_06445 ac445a8c0a291c557d2d2864afdc8e01 219 Pfam PF00691 OmpA family 115 210 2.6E-21 T 15-10-2018 IPR006665 OmpA-like domain NJ56_08825 c2cf47ca00b597e0337fd809d2337199 189 Pfam PF16964 Putative tight adherence pilin protein F 7 189 8.0E-36 T 15-10-2018 IPR031582 Putative tight adherence pilin protein F NJ56_01545 0b0def4754cd38c513efe3203ace524c 374 Gene3D G3DSA:3.20.20.105 1 367 1.9E-170 T 15-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 NJ56_01545 0b0def4754cd38c513efe3203ace524c 374 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 361 2.8E-93 T 15-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 NJ56_01545 0b0def4754cd38c513efe3203ace524c 374 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 364 57.382 T 15-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 NJ56_01545 0b0def4754cd38c513efe3203ace524c 374 SUPERFAMILY SSF51713 2 364 2.75E-163 T 15-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 NJ56_01545 0b0def4754cd38c513efe3203ace524c 374 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 367 8.1E-191 T 15-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 NJ56_01545 0b0def4754cd38c513efe3203ace524c 374 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 367 2.9E-180 T 15-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 NJ56_16885 7dcf703e5a6004565ff9a58187a173cf 69 SUPERFAMILY SSF50249 2 67 3.21E-17 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_16885 7dcf703e5a6004565ff9a58187a173cf 69 PRINTS PR00050 Cold shock protein signature 42 60 1.7E-11 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_16885 7dcf703e5a6004565ff9a58187a173cf 69 PRINTS PR00050 Cold shock protein signature 6 21 1.7E-11 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_16885 7dcf703e5a6004565ff9a58187a173cf 69 PRINTS PR00050 Cold shock protein signature 27 36 1.7E-11 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_16885 7dcf703e5a6004565ff9a58187a173cf 69 SMART SM00357 5 69 3.2E-12 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_16885 7dcf703e5a6004565ff9a58187a173cf 69 Gene3D G3DSA:2.40.50.140 5 68 1.4E-20 T 15-10-2018 NJ56_16885 7dcf703e5a6004565ff9a58187a173cf 69 PIRSF PIRSF002599 1 69 6.3E-18 T 15-10-2018 IPR012156 Cold shock, CspA GO:0003676 NJ56_16885 7dcf703e5a6004565ff9a58187a173cf 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 67 4.3E-19 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 416 8.0E-25 T 15-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 15-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 Gene3D G3DSA:3.40.50.720 161 313 2.1E-43 T 15-10-2018 NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 417 2.3E-158 T 15-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 172 306 1.8E-48 T 15-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 PIRSF PIRSF000445 1 420 5.6E-155 T 15-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 SUPERFAMILY SSF69742 1 158 8.89E-48 T 15-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 1.6E-49 T 15-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 Gene3D G3DSA:3.30.460.30 1 158 1.1E-58 T 15-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 30.687 T 15-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 SUPERFAMILY SSF69075 317 418 4.97E-28 T 15-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 NJ56_16030 db87ecc22a9eaf045a9339fdb50020e4 420 SUPERFAMILY SSF51735 162 315 3.07E-33 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_06350 8884a298ff655f312f5280d0ade6b41c 808 Gene3D G3DSA:2.60.40.2070 725 808 1.0E-24 T 15-10-2018 NJ56_06350 8884a298ff655f312f5280d0ade6b41c 808 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 282 292 - T 15-10-2018 IPR018030 Fimbrial membrane usher, conserved site NJ56_06350 8884a298ff655f312f5280d0ade6b41c 808 Pfam PF13953 PapC C-terminal domain 728 791 5.9E-20 T 15-10-2018 IPR025949 PapC-like, C-terminal domain NJ56_06350 8884a298ff655f312f5280d0ade6b41c 808 Pfam PF00577 Outer membrane usher protein 168 719 3.1E-179 T 15-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 NJ56_06350 8884a298ff655f312f5280d0ade6b41c 808 Pfam PF13954 PapC N-terminal domain 7 153 3.7E-36 T 15-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 NJ56_06350 8884a298ff655f312f5280d0ade6b41c 808 Gene3D G3DSA:2.60.40.2610 634 724 4.3E-31 T 15-10-2018 NJ56_06350 8884a298ff655f312f5280d0ade6b41c 808 Gene3D G3DSA:2.60.40.3110 240 329 2.2E-35 T 15-10-2018 NJ56_06350 8884a298ff655f312f5280d0ade6b41c 808 SUPERFAMILY SSF141729 6 130 4.58E-27 T 15-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 NJ56_06350 8884a298ff655f312f5280d0ade6b41c 808 Gene3D G3DSA:3.10.20.410 4 130 6.2E-30 T 15-10-2018 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 SUPERFAMILY SSF52935 351 479 1.18E-38 T 15-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 SUPERFAMILY SSF51621 3 345 2.97E-86 T 15-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 Gene3D G3DSA:2.40.33.10 74 172 2.3E-151 T 15-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 Pfam PF00224 Pyruvate kinase, barrel domain 6 344 1.2E-129 T 15-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 477 3.9E-30 T 15-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 PRINTS PR01050 Pyruvate kinase family signature 300 318 4.7E-51 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 PRINTS PR01050 Pyruvate kinase family signature 275 299 4.7E-51 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 PRINTS PR01050 Pyruvate kinase family signature 250 274 4.7E-51 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 PRINTS PR01050 Pyruvate kinase family signature 190 204 4.7E-51 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 PRINTS PR01050 Pyruvate kinase family signature 63 79 4.7E-51 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 PRINTS PR01050 Pyruvate kinase family signature 223 249 4.7E-51 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 PRINTS PR01050 Pyruvate kinase family signature 319 335 4.7E-51 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 479 1.3E-169 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 15-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 Gene3D G3DSA:3.20.20.60 6 341 2.3E-151 T 15-10-2018 NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 SUPERFAMILY SSF50800 74 168 4.36E-24 T 15-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily NJ56_15805 b1ad1a9f40212902385595625f93c4b1 480 Gene3D G3DSA:3.40.1380.20 342 475 2.3E-151 T 15-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14690 db877426a64b0d78c8608b3b06f6626d 559 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 97 119 - T 15-10-2018 IPR023765 Solute-binding protein family 5, conserved site NJ56_14690 db877426a64b0d78c8608b3b06f6626d 559 PIRSF PIRSF002741 6 553 6.7E-100 T 15-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 NJ56_14690 db877426a64b0d78c8608b3b06f6626d 559 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 92 470 3.7E-88 T 15-10-2018 IPR000914 Solute-binding protein family 5 domain NJ56_14690 db877426a64b0d78c8608b3b06f6626d 559 Gene3D G3DSA:3.10.105.10 311 528 6.5E-151 T 15-10-2018 NJ56_14690 db877426a64b0d78c8608b3b06f6626d 559 Gene3D G3DSA:3.90.76.10 59 231 6.5E-151 T 15-10-2018 NJ56_14690 db877426a64b0d78c8608b3b06f6626d 559 SUPERFAMILY SSF53850 49 549 5.07E-137 T 15-10-2018 NJ56_14690 db877426a64b0d78c8608b3b06f6626d 559 Gene3D G3DSA:3.40.190.10 232 540 6.5E-151 T 15-10-2018 NJ56_05895 fbbf586ef666696b4990ee4251ee5023 55 Pfam PF00471 Ribosomal protein L33 7 53 8.8E-19 T 15-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_05895 fbbf586ef666696b4990ee4251ee5023 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 15-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_05895 fbbf586ef666696b4990ee4251ee5023 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.908 T 15-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_05895 fbbf586ef666696b4990ee4251ee5023 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 8.4E-28 T 15-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_05895 fbbf586ef666696b4990ee4251ee5023 55 SUPERFAMILY SSF57829 1 53 3.72E-20 T 15-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 NJ56_05895 fbbf586ef666696b4990ee4251ee5023 55 Gene3D G3DSA:2.20.28.120 1 55 2.8E-31 T 15-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01505 da004b4b58b9b772313bbd05bf1bf265 330 SUPERFAMILY SSF55326 4 138 1.22E-34 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_01505 da004b4b58b9b772313bbd05bf1bf265 330 Pfam PF02769 AIR synthase related protein, C-terminal domain 151 254 9.0E-10 T 15-10-2018 IPR010918 PurM-like, C-terminal domain NJ56_01505 da004b4b58b9b772313bbd05bf1bf265 330 Gene3D G3DSA:3.30.1330.10 2 144 1.1E-44 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_01505 da004b4b58b9b772313bbd05bf1bf265 330 SUPERFAMILY SSF56042 143 308 3.14E-40 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_01505 da004b4b58b9b772313bbd05bf1bf265 330 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 137 4.8E-22 T 15-10-2018 IPR016188 PurM-like, N-terminal domain NJ56_01505 da004b4b58b9b772313bbd05bf1bf265 330 PIRSF PIRSF005303 1 322 3.2E-89 T 15-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 NJ56_01505 da004b4b58b9b772313bbd05bf1bf265 330 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 322 7.6E-114 T 15-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 NJ56_01505 da004b4b58b9b772313bbd05bf1bf265 330 Gene3D G3DSA:3.90.650.10 145 323 4.0E-57 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_01505 da004b4b58b9b772313bbd05bf1bf265 330 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 3 322 28.938 T 15-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 NJ56_05270 bf8c0388cdccdcd42f0bfcd72709be55 274 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 273 4.4E-103 T 15-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 NJ56_05270 bf8c0388cdccdcd42f0bfcd72709be55 274 Gene3D G3DSA:3.10.310.10 115 261 3.9E-107 T 15-10-2018 NJ56_05270 bf8c0388cdccdcd42f0bfcd72709be55 274 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 274 39.495 T 15-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 NJ56_05270 bf8c0388cdccdcd42f0bfcd72709be55 274 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 64 78 - T 15-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 NJ56_05270 bf8c0388cdccdcd42f0bfcd72709be55 274 Gene3D G3DSA:3.10.310.10 3 270 3.9E-107 T 15-10-2018 NJ56_05270 bf8c0388cdccdcd42f0bfcd72709be55 274 Pfam PF01678 Diaminopimelate epimerase 152 267 9.5E-33 T 15-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 NJ56_05270 bf8c0388cdccdcd42f0bfcd72709be55 274 Pfam PF01678 Diaminopimelate epimerase 3 123 1.6E-34 T 15-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 NJ56_05270 bf8c0388cdccdcd42f0bfcd72709be55 274 SUPERFAMILY SSF54506 2 273 9.43E-55 T 15-10-2018 NJ56_06305 23a03866e155dbaaccdde8819bb9ea7f 258 Gene3D G3DSA:3.40.50.300 10 256 1.5E-66 T 15-10-2018 NJ56_06305 23a03866e155dbaaccdde8819bb9ea7f 258 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_06305 23a03866e155dbaaccdde8819bb9ea7f 258 SMART SM00382 36 238 2.2E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_06305 23a03866e155dbaaccdde8819bb9ea7f 258 Pfam PF00005 ABC transporter 27 182 3.1E-35 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_06305 23a03866e155dbaaccdde8819bb9ea7f 258 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 12 258 8.2E-120 T 15-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 NJ56_06305 23a03866e155dbaaccdde8819bb9ea7f 258 SUPERFAMILY SSF52540 11 246 1.1E-60 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01375 6139dab7978b87f072734b6055649dec 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 412 6.5E-213 T 15-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 NJ56_01375 6139dab7978b87f072734b6055649dec 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 415 53.367 T 15-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 NJ56_01375 6139dab7978b87f072734b6055649dec 423 SMART SM00994 12 51 1.0E-24 T 15-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 NJ56_01375 6139dab7978b87f072734b6055649dec 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 393 9.3E-17 T 15-10-2018 IPR019489 Clp ATPase, C-terminal NJ56_01375 6139dab7978b87f072734b6055649dec 423 SUPERFAMILY SSF52540 63 403 6.49E-72 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01375 6139dab7978b87f072734b6055649dec 423 SMART SM00382 111 333 4.2E-9 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_01375 6139dab7978b87f072734b6055649dec 423 Gene3D G3DSA:3.30.50.30 2 52 9.3E-28 T 15-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily NJ56_01375 6139dab7978b87f072734b6055649dec 423 SUPERFAMILY SSF57716 13 48 5.84E-12 T 15-10-2018 NJ56_01375 6139dab7978b87f072734b6055649dec 423 SMART SM01086 317 412 1.5E-35 T 15-10-2018 IPR019489 Clp ATPase, C-terminal NJ56_01375 6139dab7978b87f072734b6055649dec 423 Pfam PF06689 ClpX C4-type zinc finger 13 50 1.2E-20 T 15-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 NJ56_01375 6139dab7978b87f072734b6055649dec 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 2.7E-48 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_01375 6139dab7978b87f072734b6055649dec 423 Gene3D G3DSA:1.10.8.60 316 423 4.2E-42 T 15-10-2018 NJ56_01375 6139dab7978b87f072734b6055649dec 423 Gene3D G3DSA:3.40.50.300 62 315 9.2E-108 T 15-10-2018 NJ56_01070 e2a161439d696e09e43dcd34929876c8 159 PIRSF PIRSF006181 1 159 3.1E-56 T 15-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC NJ56_01070 e2a161439d696e09e43dcd34929876c8 159 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 156 4.5E-55 T 15-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC NJ56_01070 e2a161439d696e09e43dcd34929876c8 159 SUPERFAMILY SSF55826 2 155 5.62E-46 T 15-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 NJ56_01070 e2a161439d696e09e43dcd34929876c8 159 Pfam PF04073 Aminoacyl-tRNA editing domain 31 146 2.5E-27 T 15-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 NJ56_01070 e2a161439d696e09e43dcd34929876c8 159 Gene3D G3DSA:3.90.960.10 1 159 2.5E-63 T 15-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 NJ56_04830 e20829cfaa388ed03d2f0bcc594db7c0 345 SUPERFAMILY SSF56176 7 200 7.01E-43 T 15-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 NJ56_04830 e20829cfaa388ed03d2f0bcc594db7c0 345 SUPERFAMILY SSF56194 205 342 5.89E-51 T 15-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_04830 e20829cfaa388ed03d2f0bcc594db7c0 345 Pfam PF01565 FAD binding domain 22 151 1.4E-23 T 15-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 NJ56_04830 e20829cfaa388ed03d2f0bcc594db7c0 345 Gene3D G3DSA:3.90.78.10 222 345 1.1E-44 T 15-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_04830 e20829cfaa388ed03d2f0bcc594db7c0 345 Gene3D G3DSA:3.30.43.10 7 71 1.8E-17 T 15-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 NJ56_04830 e20829cfaa388ed03d2f0bcc594db7c0 345 Gene3D G3DSA:3.30.465.10 72 221 1.4E-53 T 15-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 NJ56_04830 e20829cfaa388ed03d2f0bcc594db7c0 345 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 345 85.118 T 15-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_04830 e20829cfaa388ed03d2f0bcc594db7c0 345 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 208 332 6.4E-34 T 15-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_04830 e20829cfaa388ed03d2f0bcc594db7c0 345 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 8 332 1.5E-104 T 15-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_14820 27d0ec8cb346524e53cf1ed764b7df27 889 Pfam PF11739 Dicarboxylate transport 658 859 7.9E-61 T 15-10-2018 IPR021730 Dicarboxylate transport NJ56_14370 932bed2fe041601c158dbd5b467df731 338 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 5 328 2.5E-122 T 15-10-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 NJ56_14370 932bed2fe041601c158dbd5b467df731 338 Pfam PF03099 Biotin/lipoate A/B protein ligase family 52 158 2.3E-8 T 15-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 NJ56_14370 932bed2fe041601c158dbd5b467df731 338 SUPERFAMILY SSF82649 248 337 1.57E-24 T 15-10-2018 NJ56_14370 932bed2fe041601c158dbd5b467df731 338 Hamap MF_01602 Lipoate-protein ligase A [lplA]. 1 338 57.247 T 15-10-2018 IPR023741 Lipoate-protein ligase A GO:0009249|GO:0016979 KEGG: 00785+6.3.1.20 NJ56_14370 932bed2fe041601c158dbd5b467df731 338 Gene3D G3DSA:3.30.930.10 3 249 2.2E-87 T 15-10-2018 NJ56_14370 932bed2fe041601c158dbd5b467df731 338 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 250 333 4.6E-19 T 15-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 NJ56_14370 932bed2fe041601c158dbd5b467df731 338 SUPERFAMILY SSF55681 4 247 4.06E-78 T 15-10-2018 NJ56_14370 932bed2fe041601c158dbd5b467df731 338 Gene3D G3DSA:3.30.390.50 250 338 4.1E-29 T 15-10-2018 NJ56_10960 0a4e9db99e64acc2b7cd4d5145ce5fa1 209 SMART SM00421 146 203 3.8E-24 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_10960 0a4e9db99e64acc2b7cd4d5145ce5fa1 209 SUPERFAMILY SSF52172 6 136 2.42E-33 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_10960 0a4e9db99e64acc2b7cd4d5145ce5fa1 209 Pfam PF00072 Response regulator receiver domain 7 117 9.7E-30 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_10960 0a4e9db99e64acc2b7cd4d5145ce5fa1 209 SUPERFAMILY SSF46894 132 207 8.16E-22 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_10960 0a4e9db99e64acc2b7cd4d5145ce5fa1 209 Gene3D G3DSA:3.40.50.12740 6 207 5.3E-65 T 15-10-2018 NJ56_10960 0a4e9db99e64acc2b7cd4d5145ce5fa1 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 3.8E-22 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_10960 0a4e9db99e64acc2b7cd4d5145ce5fa1 209 SMART SM00448 5 118 2.0E-33 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_10960 0a4e9db99e64acc2b7cd4d5145ce5fa1 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_10960 0a4e9db99e64acc2b7cd4d5145ce5fa1 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 5.2E-15 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_10960 0a4e9db99e64acc2b7cd4d5145ce5fa1 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 5.2E-15 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_10960 0a4e9db99e64acc2b7cd4d5145ce5fa1 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 5.2E-15 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_18105 c472dd68d9dcb3887c8214f9c3b99ee0 184 Pfam PF13708 Domain of unknown function (DUF4942) 1 177 1.3E-46 T 15-10-2018 IPR031339 Domain of unknown function DUF4942 NJ56_11800 02735b6b525d0bfc06988fd3b2fd548c 121 Pfam PF04138 GtrA-like protein 7 116 1.1E-10 T 15-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 NJ56_11800 02735b6b525d0bfc06988fd3b2fd548c 121 PIRSF PIRSF006298 1 118 1.7E-44 T 15-10-2018 IPR016480 Glucose translocase, bactoprenol-linked NJ56_06855 d92cdc873eb2e956dcdcc6077348606c 231 Gene3D G3DSA:2.60.120.10 7 229 7.5E-99 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_06855 d92cdc873eb2e956dcdcc6077348606c 231 Gene3D G3DSA:2.60.120.10 11 135 7.5E-99 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_06855 d92cdc873eb2e956dcdcc6077348606c 231 Pfam PF02678 Pirin 7 119 5.6E-37 T 15-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 NJ56_06855 d92cdc873eb2e956dcdcc6077348606c 231 SUPERFAMILY SSF51182 1 231 6.69E-79 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_06855 d92cdc873eb2e956dcdcc6077348606c 231 PIRSF PIRSF006232 1 230 4.6E-57 T 15-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 NJ56_10720 6f2cc7f4e8387e438c39c81b7632ba87 112 Gene3D G3DSA:2.30.29.80 2 112 9.9E-47 T 15-10-2018 NJ56_10720 6f2cc7f4e8387e438c39c81b7632ba87 112 SUPERFAMILY SSF160113 55 109 5.23E-16 T 15-10-2018 IPR036913 YegP-like superfamily NJ56_10720 6f2cc7f4e8387e438c39c81b7632ba87 112 Pfam PF07411 Domain of unknown function (DUF1508) 11 58 1.4E-23 T 15-10-2018 IPR010879 Domain of unknown function DUF1508 NJ56_10720 6f2cc7f4e8387e438c39c81b7632ba87 112 Pfam PF07411 Domain of unknown function (DUF1508) 64 109 1.1E-20 T 15-10-2018 IPR010879 Domain of unknown function DUF1508 NJ56_10720 6f2cc7f4e8387e438c39c81b7632ba87 112 SUPERFAMILY SSF160113 4 58 4.06E-19 T 15-10-2018 IPR036913 YegP-like superfamily NJ56_13085 f6e168722f0af847f4908f96fc7748ab 290 SUPERFAMILY SSF46689 218 271 1.61E-10 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_13085 f6e168722f0af847f4908f96fc7748ab 290 Pfam PF12833 Helix-turn-helix domain 189 265 5.4E-11 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_13085 f6e168722f0af847f4908f96fc7748ab 290 SMART SM00342 183 265 1.4E-17 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_13085 f6e168722f0af847f4908f96fc7748ab 290 Gene3D G3DSA:1.10.10.60 163 271 4.3E-19 T 15-10-2018 NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 Gene3D G3DSA:3.20.20.450 609 860 4.4E-92 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 150 263 2.1E-7 T 15-10-2018 IPR000014 PAS domain NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 25 139 4.2E-14 T 15-10-2018 IPR000014 PAS domain NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SUPERFAMILY SSF55781 283 435 3.93E-20 T 15-10-2018 NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SMART SM00091 147 216 0.29 T 15-10-2018 IPR000014 PAS domain NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SMART SM00091 18 88 0.04 T 15-10-2018 IPR000014 PAS domain NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 Gene3D G3DSA:3.30.450.40 280 430 1.5E-17 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 Gene3D G3DSA:3.30.450.20 11 143 1.1E-20 T 15-10-2018 NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 Gene3D G3DSA:3.30.450.20 144 275 3.4E-15 T 15-10-2018 NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 Pfam PF00563 EAL domain 611 846 6.9E-71 T 15-10-2018 IPR001633 EAL domain NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 Pfam PF13426 PAS domain 159 260 2.2E-9 T 15-10-2018 IPR000014 PAS domain NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 Pfam PF00990 Diguanylate cyclase, GGDEF domain 435 590 1.2E-40 T 15-10-2018 IPR000160 GGDEF domain NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SMART SM00065 281 432 2.0E-4 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SUPERFAMILY SSF55073 440 596 2.59E-44 T 15-10-2018 IPR029787 Nucleotide cyclase NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 Pfam PF13185 GAF domain 280 423 2.2E-11 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SUPERFAMILY SSF141868 610 859 1.57E-82 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 Gene3D G3DSA:3.30.70.270 431 608 4.1E-51 T 15-10-2018 NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 432 593 1.1E-34 T 15-10-2018 IPR000160 GGDEF domain NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 Pfam PF08447 PAS fold 43 129 1.8E-11 T 15-10-2018 IPR013655 PAS fold-3 GO:0005515 NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SUPERFAMILY SSF55785 132 260 4.35E-12 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SMART SM00267 424 595 1.8E-46 T 15-10-2018 IPR000160 GGDEF domain NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 PIRSF PIRSF005925 11 148 1.4E-5 T 15-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 PIRSF PIRSF005925 136 862 8.3E-244 T 15-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SMART SM00086 93 135 1.4E-4 T 15-10-2018 IPR001610 PAC motif NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SMART SM00086 220 262 21.0 T 15-10-2018 IPR001610 PAC motif NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SUPERFAMILY SSF55785 28 132 8.38E-22 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_15665 ac6382b5bdd44d185c437984dbb6dd32 862 SMART SM00052 605 851 1.9E-105 T 15-10-2018 IPR001633 EAL domain NJ56_07130 043e7a84d6320195a803e19cd15064cc 340 Pfam PF00579 tRNA synthetases class I (W and Y) 8 291 9.9E-88 T 15-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_07130 043e7a84d6320195a803e19cd15064cc 340 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 8 336 3.8E-117 T 15-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 NJ56_07130 043e7a84d6320195a803e19cd15064cc 340 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 72 91 4.1E-29 T 15-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 NJ56_07130 043e7a84d6320195a803e19cd15064cc 340 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 148 169 4.1E-29 T 15-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 NJ56_07130 043e7a84d6320195a803e19cd15064cc 340 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 22 38 4.1E-29 T 15-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 NJ56_07130 043e7a84d6320195a803e19cd15064cc 340 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 201 211 4.1E-29 T 15-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 NJ56_07130 043e7a84d6320195a803e19cd15064cc 340 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 18 27 - T 15-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_07130 043e7a84d6320195a803e19cd15064cc 340 Gene3D G3DSA:1.10.240.10 192 304 6.3E-142 T 15-10-2018 NJ56_07130 043e7a84d6320195a803e19cd15064cc 340 Gene3D G3DSA:3.40.50.620 12 335 6.3E-142 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_07130 043e7a84d6320195a803e19cd15064cc 340 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 9 337 42.541 T 15-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 NJ56_07130 043e7a84d6320195a803e19cd15064cc 340 SUPERFAMILY SSF52374 11 336 1.6E-98 T 15-10-2018 NJ56_09455 809b1908b46e9515d44abd247a38313f 311 SUPERFAMILY SSF53850 94 302 2.17E-36 T 15-10-2018 NJ56_09455 809b1908b46e9515d44abd247a38313f 311 Gene3D G3DSA:3.40.190.290 96 305 7.0E-35 T 15-10-2018 NJ56_09455 809b1908b46e9515d44abd247a38313f 311 SUPERFAMILY SSF46785 3 84 3.22E-17 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_09455 809b1908b46e9515d44abd247a38313f 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.6E-15 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_09455 809b1908b46e9515d44abd247a38313f 311 Gene3D G3DSA:1.10.10.10 4 95 1.9E-16 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_09455 809b1908b46e9515d44abd247a38313f 311 Pfam PF03466 LysR substrate binding domain 93 297 2.6E-35 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_04825 97d0756be34ede1fac0984a78650053d 320 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 6 74 3.5E-26 T 15-10-2018 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 NJ56_04825 97d0756be34ede1fac0984a78650053d 320 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 317 32.744 T 15-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 NJ56_04825 97d0756be34ede1fac0984a78650053d 320 SUPERFAMILY SSF55681 73 268 1.66E-58 T 15-10-2018 NJ56_04825 97d0756be34ede1fac0984a78650053d 320 SUPERFAMILY SSF50037 271 317 6.87E-11 T 15-10-2018 IPR008988 Transcriptional repressor, C-terminal NJ56_04825 97d0756be34ede1fac0984a78650053d 320 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 81 317 1.2E-75 T 15-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 NJ56_04825 97d0756be34ede1fac0984a78650053d 320 Gene3D G3DSA:3.30.930.10 65 270 1.7E-73 T 15-10-2018 NJ56_04825 97d0756be34ede1fac0984a78650053d 320 Gene3D G3DSA:2.30.30.100 271 313 2.3E-22 T 15-10-2018 NJ56_04825 97d0756be34ede1fac0984a78650053d 320 Pfam PF08279 HTH domain 10 58 1.4E-11 T 15-10-2018 IPR013196 Helix-turn-helix, type 11 NJ56_04825 97d0756be34ede1fac0984a78650053d 320 Gene3D G3DSA:1.10.10.10 1 64 5.5E-20 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_04825 97d0756be34ede1fac0984a78650053d 320 Pfam PF02237 Biotin protein ligase C terminal domain 272 317 4.5E-10 T 15-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 NJ56_04825 97d0756be34ede1fac0984a78650053d 320 SUPERFAMILY SSF46785 8 60 1.32E-12 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_04825 97d0756be34ede1fac0984a78650053d 320 Pfam PF03099 Biotin/lipoate A/B protein ligase family 84 208 2.3E-25 T 15-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 NJ56_14510 e84f94ae5dcf44c376d0073a387a0e58 221 Gene3D G3DSA:2.40.30.20 94 191 3.9E-29 T 15-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_14510 e84f94ae5dcf44c376d0073a387a0e58 221 PIRSF PIRSF000498 1 210 8.5E-74 T 15-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_14510 e84f94ae5dcf44c376d0073a387a0e58 221 SUPERFAMILY SSF63380 1 93 6.72E-28 T 15-10-2018 IPR017938 Riboflavin synthase-like beta-barrel NJ56_14510 e84f94ae5dcf44c376d0073a387a0e58 221 Gene3D G3DSA:2.40.30.20 1 89 2.7E-31 T 15-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_14510 e84f94ae5dcf44c376d0073a387a0e58 221 SUPERFAMILY SSF63380 93 199 3.49E-32 T 15-10-2018 IPR017938 Riboflavin synthase-like beta-barrel NJ56_14510 e84f94ae5dcf44c376d0073a387a0e58 221 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 201 1.6E-83 T 15-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_14510 e84f94ae5dcf44c376d0073a387a0e58 221 Pfam PF00677 Lumazine binding domain 3 87 6.0E-21 T 15-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_14510 e84f94ae5dcf44c376d0073a387a0e58 221 Pfam PF00677 Lumazine binding domain 100 185 7.9E-22 T 15-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_16565 a7daa61a53a083091dbe861021f97fbc 320 Pfam PF00849 RNA pseudouridylate synthase 102 249 3.0E-31 T 15-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_16565 a7daa61a53a083091dbe861021f97fbc 320 Pfam PF01479 S4 domain 20 66 2.3E-9 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_16565 a7daa61a53a083091dbe861021f97fbc 320 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 140 154 - T 15-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_16565 a7daa61a53a083091dbe861021f97fbc 320 SUPERFAMILY SSF55174 19 70 2.21E-8 T 15-10-2018 NJ56_16565 a7daa61a53a083091dbe861021f97fbc 320 SUPERFAMILY SSF55120 95 312 4.16E-64 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_16565 a7daa61a53a083091dbe861021f97fbc 320 Gene3D G3DSA:3.10.290.10 7 72 4.5E-16 T 15-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 NJ56_16565 a7daa61a53a083091dbe861021f97fbc 320 Gene3D G3DSA:3.30.2350.10 92 317 8.7E-84 T 15-10-2018 NJ56_16565 a7daa61a53a083091dbe861021f97fbc 320 SMART SM00363 20 80 6.4E-7 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_16565 a7daa61a53a083091dbe861021f97fbc 320 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 313 2.2E-91 T 15-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_13115 3cf489b6584c6f3950ac4881e527e4bf 427 SUPERFAMILY SSF64518 1 427 1.7E-96 T 15-10-2018 NJ56_13115 3cf489b6584c6f3950ac4881e527e4bf 427 Gene3D G3DSA:1.20.1330.10 62 372 2.3E-53 T 15-10-2018 NJ56_13115 3cf489b6584c6f3950ac4881e527e4bf 427 Gene3D G3DSA:3.30.70.3070 166 326 2.3E-53 T 15-10-2018 NJ56_13115 3cf489b6584c6f3950ac4881e527e4bf 427 Gene3D G3DSA:1.20.58.1830 1 61 9.3E-10 T 15-10-2018 NJ56_13115 3cf489b6584c6f3950ac4881e527e4bf 427 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 139 4.8E-42 T 15-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NJ56_13115 3cf489b6584c6f3950ac4881e527e4bf 427 Gene3D G3DSA:1.10.8.410 375 427 3.9E-23 T 15-10-2018 NJ56_13115 3cf489b6584c6f3950ac4881e527e4bf 427 Pfam PF00700 Bacterial flagellin C-terminal helical region 342 426 2.6E-30 T 15-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NJ56_13115 3cf489b6584c6f3950ac4881e527e4bf 427 PRINTS PR00207 Flagellin signature 75 94 7.1E-30 T 15-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NJ56_13115 3cf489b6584c6f3950ac4881e527e4bf 427 PRINTS PR00207 Flagellin signature 36 53 7.1E-30 T 15-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NJ56_13115 3cf489b6584c6f3950ac4881e527e4bf 427 PRINTS PR00207 Flagellin signature 110 133 7.1E-30 T 15-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NJ56_16535 153406265fd3bc84f5332424587aef39 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 309 1.5E-39 T 15-10-2018 IPR020801 Polyketide synthase, acyl transferase domain NJ56_16535 153406265fd3bc84f5332424587aef39 309 PIRSF PIRSF000446 1 309 6.0E-140 T 15-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 NJ56_16535 153406265fd3bc84f5332424587aef39 309 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 3.6E-131 T 15-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 NJ56_16535 153406265fd3bc84f5332424587aef39 309 Pfam PF00698 Acyl transferase domain 7 291 3.8E-38 T 15-10-2018 IPR014043 Acyl transferase NJ56_16535 153406265fd3bc84f5332424587aef39 309 Gene3D G3DSA:3.40.366.10 6 286 6.0E-108 T 15-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 NJ56_16535 153406265fd3bc84f5332424587aef39 309 Gene3D G3DSA:3.30.70.250 125 197 6.0E-108 T 15-10-2018 NJ56_16535 153406265fd3bc84f5332424587aef39 309 SUPERFAMILY SSF52151 4 307 2.33E-80 T 15-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase NJ56_16535 153406265fd3bc84f5332424587aef39 309 SUPERFAMILY SSF55048 128 197 9.81E-17 T 15-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding NJ56_09765 fc9248318de91f205ee8f8c3b7e52867 319 Gene3D G3DSA:3.90.226.10 4 319 1.9E-123 T 15-10-2018 NJ56_09765 fc9248318de91f205ee8f8c3b7e52867 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 319 50.823 T 15-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_09765 fc9248318de91f205ee8f8c3b7e52867 319 SUPERFAMILY SSF52096 5 318 4.4E-105 T 15-10-2018 IPR029045 ClpP/crotonase-like domain superfamily NJ56_09765 fc9248318de91f205ee8f8c3b7e52867 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 91 102 3.2E-50 T 15-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_09765 fc9248318de91f205ee8f8c3b7e52867 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 200 209 3.2E-50 T 15-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_09765 fc9248318de91f205ee8f8c3b7e52867 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 156 169 3.2E-50 T 15-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_09765 fc9248318de91f205ee8f8c3b7e52867 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 116 134 3.2E-50 T 15-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_09765 fc9248318de91f205ee8f8c3b7e52867 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 172 185 3.2E-50 T 15-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_09765 fc9248318de91f205ee8f8c3b7e52867 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 137 153 3.2E-50 T 15-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_09765 fc9248318de91f205ee8f8c3b7e52867 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 151 2.2E-63 T 15-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_09765 fc9248318de91f205ee8f8c3b7e52867 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 2.2E-171 T 15-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_03370 636c28334f37c339d48ea87db2966d05 309 Pfam PF16946 OMPG-porin 1 family 124 308 4.5E-9 T 15-10-2018 IPR031605 Putative OMPG-porin 1 family NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 364 383 - T 15-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 PIRSF PIRSF000774 1 477 1.1E-148 T 15-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 Pfam PF04552 Sigma-54, DNA binding domain 317 475 8.8E-70 T 15-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 474 1.1E-156 T 15-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 Gene3D G3DSA:1.10.10.60 417 474 1.9E-22 T 15-10-2018 NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 3.4E-15 T 15-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 PRINTS PR00045 Sigma-54 factor signature 186 203 7.3E-32 T 15-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 PRINTS PR00045 Sigma-54 factor signature 376 388 7.3E-32 T 15-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 PRINTS PR00045 Sigma-54 factor signature 450 468 7.3E-32 T 15-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 PRINTS PR00045 Sigma-54 factor signature 392 403 7.3E-32 T 15-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 Pfam PF04963 Sigma-54 factor, core binding domain 114 303 4.0E-60 T 15-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 Gene3D G3DSA:1.10.10.1330 116 250 2.8E-24 T 15-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily NJ56_08160 0e51f00af16c46e83084f66a52865ef0 477 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 455 462 - T 15-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 NJ56_07220 7acab7d9797448d895f89f2db5a76cd7 417 SUPERFAMILY SSF56059 107 287 5.13E-24 T 15-10-2018 NJ56_07220 7acab7d9797448d895f89f2db5a76cd7 417 Gene3D G3DSA:3.30.470.20 101 410 8.5E-51 T 15-10-2018 NJ56_07220 7acab7d9797448d895f89f2db5a76cd7 417 Pfam PF13535 ATP-grasp domain 144 284 1.1E-15 T 15-10-2018 NJ56_11705 287fb524c7eb8527c04897cedd5955cc 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_11705 287fb524c7eb8527c04897cedd5955cc 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 7 147 26.819 T 15-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11705 287fb524c7eb8527c04897cedd5955cc 180 Gene3D G3DSA:3.30.70.3270 33 176 2.4E-42 T 15-10-2018 NJ56_11705 287fb524c7eb8527c04897cedd5955cc 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 4.6E-51 T 15-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11705 287fb524c7eb8527c04897cedd5955cc 180 SUPERFAMILY SSF54862 33 155 9.21E-29 T 15-10-2018 NJ56_11705 287fb524c7eb8527c04897cedd5955cc 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 1.7E-11 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_07050 0fb9151c9e2bc04adf73ea5d72389b54 135 SMART SM00363 11 76 1.2E-7 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07050 0fb9151c9e2bc04adf73ea5d72389b54 135 Gene3D G3DSA:3.10.290.10 4 110 1.1E-37 T 15-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 NJ56_07050 0fb9151c9e2bc04adf73ea5d72389b54 135 Pfam PF01479 S4 domain 12 57 8.7E-12 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07050 0fb9151c9e2bc04adf73ea5d72389b54 135 SUPERFAMILY SSF55174 11 106 1.09E-29 T 15-10-2018 NJ56_07050 0fb9151c9e2bc04adf73ea5d72389b54 135 PIRSF PIRSF016821 8 135 3.3E-40 T 15-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 NJ56_05770 765ad550fd474a0b2ad7e3b482d23fd2 255 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 4.8E-94 T 15-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_05770 765ad550fd474a0b2ad7e3b482d23fd2 255 Pfam PF00121 Triosephosphate isomerase 5 246 9.6E-93 T 15-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_05770 765ad550fd474a0b2ad7e3b482d23fd2 255 SUPERFAMILY SSF51351 1 250 3.8E-91 T 15-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_05770 765ad550fd474a0b2ad7e3b482d23fd2 255 Gene3D G3DSA:3.20.20.70 1 255 1.8E-102 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_05770 765ad550fd474a0b2ad7e3b482d23fd2 255 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 62.023 T 15-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_05770 765ad550fd474a0b2ad7e3b482d23fd2 255 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 15-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_15495 e026e6584e28f431b34d20005ee155b4 199 SUPERFAMILY SSF52540 1 141 1.54E-40 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15495 e026e6584e28f431b34d20005ee155b4 199 PIRSF PIRSF035805 1 198 8.2E-59 T 15-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 NJ56_15495 e026e6584e28f431b34d20005ee155b4 199 Pfam PF00265 Thymidine kinase 2 186 3.2E-63 T 15-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 NJ56_15495 e026e6584e28f431b34d20005ee155b4 199 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 15-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 NJ56_15495 e026e6584e28f431b34d20005ee155b4 199 SUPERFAMILY SSF57716 142 193 5.23E-18 T 15-10-2018 NJ56_15495 e026e6584e28f431b34d20005ee155b4 199 Gene3D G3DSA:3.30.60.20 144 191 3.5E-10 T 15-10-2018 NJ56_15495 e026e6584e28f431b34d20005ee155b4 199 Gene3D G3DSA:3.40.50.300 1 141 3.7E-26 T 15-10-2018 NJ56_15495 e026e6584e28f431b34d20005ee155b4 199 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 35.426 T 15-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 NJ56_08975 e8d5d63976c1ca939a76942b2b08c731 442 TIGRFAM TIGR00814 stp: serine transporter 16 432 3.0E-166 T 15-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 NJ56_08975 e8d5d63976c1ca939a76942b2b08c731 442 Pfam PF01490 Transmembrane amino acid transporter protein 24 441 5.5E-7 T 15-10-2018 IPR013057 Amino acid transporter, transmembrane domain NJ56_08975 e8d5d63976c1ca939a76942b2b08c731 442 Hamap MF_01583 Threonine/serine transporter TdcC [tdcC]. 1 442 49.755 T 15-10-2018 IPR023726 Threonine/serine transporter TdcC GO:0015565|GO:0015826|GO:0016021|GO:0022889|GO:0032329 NJ56_05145 b949aff31aa49669ec4df252c403a143 83 Pfam PF01206 Sulfurtransferase TusA 10 79 2.9E-26 T 15-10-2018 IPR001455 TusA-like domain NJ56_05145 b949aff31aa49669ec4df252c403a143 83 SUPERFAMILY SSF64307 6 80 1.31E-26 T 15-10-2018 IPR036868 TusA-like domain superfamily NJ56_05145 b949aff31aa49669ec4df252c403a143 83 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 15-10-2018 IPR001455 TusA-like domain NJ56_05145 b949aff31aa49669ec4df252c403a143 83 Gene3D G3DSA:3.30.110.40 1 80 2.2E-32 T 15-10-2018 IPR036868 TusA-like domain superfamily NJ56_05145 b949aff31aa49669ec4df252c403a143 83 Hamap MF_00413 Sulfur carrier protein TusA [tusA]. 3 81 29.385 T 15-10-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 SMART SM00091 192 258 8.9E-4 T 15-10-2018 IPR000014 PAS domain NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 Gene3D G3DSA:3.30.450.40 1 179 3.9E-51 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 SUPERFAMILY SSF46689 525 619 4.93E-10 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 Pfam PF00158 Sigma-54 interaction domain 322 479 1.6E-37 T 15-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 Pfam PF02954 Bacterial regulatory protein, Fis family 579 617 1.0E-9 T 15-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 Gene3D G3DSA:3.30.450.20 202 304 1.8E-21 T 15-10-2018 NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 Gene3D G3DSA:1.10.8.60 485 559 3.6E-17 T 15-10-2018 NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 Gene3D G3DSA:1.10.10.60 576 619 2.2E-10 T 15-10-2018 NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 SUPERFAMILY SSF55785 188 291 2.44E-9 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 SUPERFAMILY SSF52540 322 556 1.68E-45 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 Gene3D G3DSA:3.40.50.300 305 484 4.6E-45 T 15-10-2018 NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 Pfam PF00989 PAS fold 193 293 1.2E-11 T 15-10-2018 IPR013767 PAS fold GO:0006355 NJ56_03220 4dd3715d04dc14747045fd68f7789503 630 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 340 353 - T 15-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NJ56_06275 eeeab97eb1b07ee5618aac68060f2ebd 140 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 4 132 21.127 T 15-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06275 eeeab97eb1b07ee5618aac68060f2ebd 140 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 11 88 1.0E-38 T 15-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06275 eeeab97eb1b07ee5618aac68060f2ebd 140 SUPERFAMILY SSF46604 90 138 1.12E-14 T 15-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06275 eeeab97eb1b07ee5618aac68060f2ebd 140 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 7 85 1.7E-28 T 15-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06275 eeeab97eb1b07ee5618aac68060f2ebd 140 Gene3D G3DSA:1.20.5.440 92 135 6.3E-19 T 15-10-2018 NJ56_06275 eeeab97eb1b07ee5618aac68060f2ebd 140 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 90 134 2.9E-12 T 15-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain NJ56_06275 eeeab97eb1b07ee5618aac68060f2ebd 140 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 134 3.4E-45 T 15-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06275 eeeab97eb1b07ee5618aac68060f2ebd 140 Gene3D G3DSA:2.60.15.10 4 91 1.2E-31 T 15-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06275 eeeab97eb1b07ee5618aac68060f2ebd 140 SUPERFAMILY SSF51344 4 87 6.93E-24 T 15-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_09615 72887f46d2c5c5629b21da5f111edd76 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.2E-9 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_09615 72887f46d2c5c5629b21da5f111edd76 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.2E-9 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_09615 72887f46d2c5c5629b21da5f111edd76 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.2E-9 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_09615 72887f46d2c5c5629b21da5f111edd76 305 SUPERFAMILY SSF46785 3 87 2.01E-23 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_09615 72887f46d2c5c5629b21da5f111edd76 305 Gene3D G3DSA:3.40.190.10 103 288 3.1E-59 T 15-10-2018 NJ56_09615 72887f46d2c5c5629b21da5f111edd76 305 SUPERFAMILY SSF53850 93 296 5.43E-39 T 15-10-2018 NJ56_09615 72887f46d2c5c5629b21da5f111edd76 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.3E-20 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_09615 72887f46d2c5c5629b21da5f111edd76 305 Pfam PF03466 LysR substrate binding domain 91 292 1.9E-38 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_09615 72887f46d2c5c5629b21da5f111edd76 305 Gene3D G3DSA:3.40.190.10 163 262 3.1E-59 T 15-10-2018 NJ56_09615 72887f46d2c5c5629b21da5f111edd76 305 Gene3D G3DSA:1.10.10.10 7 94 4.6E-24 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_15340 c306a63ade4690f850f83d2245b9cb3a 138 Pfam PF03692 Putative zinc- or iron-chelating domain 7 98 2.9E-11 T 15-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 Gene3D G3DSA:3.40.50.720 376 667 1.0E-118 T 15-10-2018 NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 620 634 2.4E-5 T 15-10-2018 NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 377 399 2.4E-5 T 15-10-2018 NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 Gene3D G3DSA:3.50.50.60 470 626 1.0E-118 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 SUPERFAMILY SSF51905 461 651 5.3E-22 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 SUPERFAMILY SSF51395 2 367 8.55E-112 T 15-10-2018 NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 644 1.1E-22 T 15-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 Gene3D G3DSA:3.20.20.70 3 370 1.1E-125 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 2.0E-12 T 15-10-2018 NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 498 516 2.0E-12 T 15-10-2018 NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 619 635 2.0E-12 T 15-10-2018 NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 SUPERFAMILY SSF51971 334 521 1.41E-39 T 15-10-2018 NJ56_08455 550a56ea89c3d7ca4da9ac6363bcee94 673 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 3.0E-90 T 15-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 NJ56_06960 f186509d5fa794101231bb2133e4e969 699 SUPERFAMILY SSF51445 132 692 3.07E-147 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_06960 f186509d5fa794101231bb2133e4e969 699 Gene3D G3DSA:3.20.20.80 145 691 1.3E-121 T 15-10-2018 NJ56_06960 f186509d5fa794101231bb2133e4e969 699 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 105 691 7.2E-245 T 15-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NJ56_06960 f186509d5fa794101231bb2133e4e969 699 Pfam PF02446 4-alpha-glucanotransferase 152 670 1.3E-129 T 15-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NJ56_16690 d75c3ffcf19405371a80ff0ec5a5a34b 395 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 395 67.834 T 15-10-2018 IPR023542 rRNA large subunit methyltransferase I GO:0008649 NJ56_16690 d75c3ffcf19405371a80ff0ec5a5a34b 395 Gene3D G3DSA:3.40.50.150 181 395 3.0E-71 T 15-10-2018 NJ56_16690 d75c3ffcf19405371a80ff0ec5a5a34b 395 SUPERFAMILY SSF53335 78 391 4.43E-71 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_16690 d75c3ffcf19405371a80ff0ec5a5a34b 395 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 183 370 1.3E-29 T 15-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 NJ56_16690 d75c3ffcf19405371a80ff0ec5a5a34b 395 Gene3D G3DSA:3.30.750.80 72 180 1.3E-36 T 15-10-2018 NJ56_16690 d75c3ffcf19405371a80ff0ec5a5a34b 395 SUPERFAMILY SSF88697 1 68 1.19E-15 T 15-10-2018 IPR015947 PUA-like superfamily NJ56_16690 d75c3ffcf19405371a80ff0ec5a5a34b 395 Gene3D G3DSA:2.30.130.10 1 71 5.0E-29 T 15-10-2018 IPR036974 PUA domain superfamily GO:0003723 NJ56_16690 d75c3ffcf19405371a80ff0ec5a5a34b 395 SMART SM00359 2 87 2.1E-14 T 15-10-2018 IPR002478 PUA domain GO:0003723 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 Gene3D G3DSA:2.40.160.10 23 365 1.0E-136 T 15-10-2018 IPR023614 Porin domain superfamily NJ56_16205 beda03875747c98c274ff67e77ff6471 365 SUPERFAMILY SSF56935 23 365 6.02E-71 T 15-10-2018 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 Pfam PF00267 Gram-negative porin 28 365 9.7E-130 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 320 337 1.4E-11 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 240 252 1.4E-11 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 154 165 1.4E-11 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 53 64 1.4E-11 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 97 107 1.4E-11 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 246 263 4.3E-64 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 4.3E-64 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 4.3E-64 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 97 119 4.3E-64 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 274 293 4.3E-64 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_16205 beda03875747c98c274ff67e77ff6471 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 152 174 4.3E-64 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_14700 a227e26cb2619bd9f6dfa6492069418b 275 PRINTS PR01395 Bordetella pertussis toxin A subunit signature 26 49 1.1E-10 T 15-10-2018 IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 NJ56_14700 a227e26cb2619bd9f6dfa6492069418b 275 PRINTS PR01395 Bordetella pertussis toxin A subunit signature 101 122 1.1E-10 T 15-10-2018 IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 NJ56_14700 a227e26cb2619bd9f6dfa6492069418b 275 PRINTS PR01395 Bordetella pertussis toxin A subunit signature 178 202 1.1E-10 T 15-10-2018 IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 NJ56_14700 a227e26cb2619bd9f6dfa6492069418b 275 SUPERFAMILY SSF56399 27 238 6.4E-49 T 15-10-2018 NJ56_14700 a227e26cb2619bd9f6dfa6492069418b 275 Pfam PF02917 Pertussis toxin, subunit 1 27 218 1.9E-26 T 15-10-2018 IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 NJ56_14700 a227e26cb2619bd9f6dfa6492069418b 275 Gene3D G3DSA:3.90.210.10 26 245 4.8E-58 T 15-10-2018 NJ56_01595 3a5235eb7e34b5eb2b9c9ff91adb1322 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 225 3.8E-28 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_01595 3a5235eb7e34b5eb2b9c9ff91adb1322 229 SMART SM00448 3 116 1.5E-44 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_01595 3a5235eb7e34b5eb2b9c9ff91adb1322 229 SUPERFAMILY SSF46894 129 226 2.47E-31 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_01595 3a5235eb7e34b5eb2b9c9ff91adb1322 229 Gene3D G3DSA:1.10.10.10 128 229 1.5E-41 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_01595 3a5235eb7e34b5eb2b9c9ff91adb1322 229 SUPERFAMILY SSF52172 3 126 1.02E-42 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_01595 3a5235eb7e34b5eb2b9c9ff91adb1322 229 Pfam PF00072 Response regulator receiver domain 5 117 9.0E-28 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_01595 3a5235eb7e34b5eb2b9c9ff91adb1322 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 9.2E-115 T 15-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 NJ56_01595 3a5235eb7e34b5eb2b9c9ff91adb1322 229 Gene3D G3DSA:3.40.50.2300 1 127 7.3E-38 T 15-10-2018 NJ56_01595 3a5235eb7e34b5eb2b9c9ff91adb1322 229 SMART SM00862 150 225 8.3E-27 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_09255 747bc0dfdfc73c095d536d416652286e 192 Pfam PF03695 Uncharacterised protein family (UPF0149) 13 177 9.8E-36 T 15-10-2018 IPR011978 Uncharacterised protein family UPF0149 NJ56_09255 747bc0dfdfc73c095d536d416652286e 192 SUPERFAMILY SSF101327 8 176 2.09E-51 T 15-10-2018 IPR036255 YgfB-like superfamily NJ56_09255 747bc0dfdfc73c095d536d416652286e 192 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 15 166 9.0E-12 T 15-10-2018 IPR011978 Uncharacterised protein family UPF0149 NJ56_09255 747bc0dfdfc73c095d536d416652286e 192 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 6 190 37.094 T 15-10-2018 IPR011978 Uncharacterised protein family UPF0149 NJ56_09255 747bc0dfdfc73c095d536d416652286e 192 Gene3D G3DSA:1.20.120.740 5 192 3.8E-58 T 15-10-2018 NJ56_06625 3e95f044ec0a64b80e32efdce25866b7 563 Pfam PF17392 Urocanase C-terminal domain 352 546 4.3E-92 T 15-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_06625 3e95f044ec0a64b80e32efdce25866b7 563 Pfam PF17391 Urocanase N-terminal domain 12 138 1.1E-62 T 15-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_06625 3e95f044ec0a64b80e32efdce25866b7 563 Pfam PF01175 Urocanase Rossmann-like domain 141 349 1.7E-87 T 15-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_06625 3e95f044ec0a64b80e32efdce25866b7 563 Gene3D G3DSA:3.40.50.10730 142 349 7.7E-263 T 15-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_06625 3e95f044ec0a64b80e32efdce25866b7 563 SUPERFAMILY SSF111326 7 555 9.02E-263 T 15-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_06625 3e95f044ec0a64b80e32efdce25866b7 563 PIRSF PIRSF001423 2 561 1.3E-295 T 15-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_06625 3e95f044ec0a64b80e32efdce25866b7 563 ProSitePatterns PS01233 Urocanase signature. 442 457 - T 15-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_06625 3e95f044ec0a64b80e32efdce25866b7 563 Hamap MF_00577 Urocanate hydratase [hutU]. 3 556 50.473 T 15-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_06625 3e95f044ec0a64b80e32efdce25866b7 563 Gene3D G3DSA:3.40.1770.10 17 542 7.7E-263 T 15-10-2018 NJ56_06625 3e95f044ec0a64b80e32efdce25866b7 563 TIGRFAM TIGR01228 hutU: urocanate hydratase 11 554 0.0 T 15-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 Gene3D G3DSA:3.90.700.10 237 363 7.6E-164 T 15-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 PIRSF PIRSF000171 1 574 9.5E-42 T 15-10-2018 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 9.4E-244 T 15-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.1E-5 T 15-10-2018 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 2.1E-5 T 15-10-2018 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 SUPERFAMILY SSF51905 3 417 4.21E-71 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 Gene3D G3DSA:3.50.50.60 7 409 7.6E-164 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 SUPERFAMILY SSF56425 227 358 7.48E-43 T 15-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 Gene3D G3DSA:4.10.80.40 543 577 3.0E-19 T 15-10-2018 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 6.5E-10 T 15-10-2018 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 6.5E-10 T 15-10-2018 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 Gene3D G3DSA:1.20.58.100 424 538 5.7E-35 T 15-10-2018 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 SUPERFAMILY SSF46977 444 591 2.35E-45 T 15-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 Pfam PF00890 FAD binding domain 7 397 1.0E-113 T 15-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 15-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 1.0E-37 T 15-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04175 37b8a92dece6e64fe5021c099fb3abfc 604 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 3 582 0.0 T 15-10-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 NJ56_06965 fad385ff4caf23ec02c7eaf2c99725a6 191 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 177 1.0E-26 T 15-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 NJ56_06965 fad385ff4caf23ec02c7eaf2c99725a6 191 SUPERFAMILY SSF117916 95 184 5.45E-24 T 15-10-2018 IPR034904 Fe-S cluster assembly domain superfamily NJ56_06965 fad385ff4caf23ec02c7eaf2c99725a6 191 Pfam PF01106 NifU-like domain 111 177 1.2E-20 T 15-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 NJ56_06965 fad385ff4caf23ec02c7eaf2c99725a6 191 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 98 3.9E-12 T 15-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 NJ56_06965 fad385ff4caf23ec02c7eaf2c99725a6 191 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 191 46.274 T 15-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 NJ56_06965 fad385ff4caf23ec02c7eaf2c99725a6 191 Gene3D G3DSA:3.30.300.130 106 191 2.9E-21 T 15-10-2018 IPR034904 Fe-S cluster assembly domain superfamily NJ56_06965 fad385ff4caf23ec02c7eaf2c99725a6 191 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 2 191 2.0E-101 T 15-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 NJ56_06965 fad385ff4caf23ec02c7eaf2c99725a6 191 SUPERFAMILY SSF89360 1 97 4.12E-21 T 15-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 NJ56_06965 fad385ff4caf23ec02c7eaf2c99725a6 191 Gene3D G3DSA:2.60.300.12 1 98 1.9E-13 T 15-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 NJ56_16095 1d5321e2194115202aa2179ba00c950a 257 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 73 235 8.7E-37 T 15-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain NJ56_16095 1d5321e2194115202aa2179ba00c950a 257 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 45 256 4.5E-92 T 15-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 NJ56_16095 1d5321e2194115202aa2179ba00c950a 257 PIRSF PIRSF005624 38 257 3.1E-97 T 15-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 NJ56_16095 1d5321e2194115202aa2179ba00c950a 257 SUPERFAMILY SSF52540 39 253 3.18E-35 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16095 1d5321e2194115202aa2179ba00c950a 257 Gene3D G3DSA:3.40.50.300 53 257 1.9E-65 T 15-10-2018 NJ56_06000 59718383786a3e29d5617961023f532b 700 SUPERFAMILY SSF55021 627 697 1.62E-5 T 15-10-2018 NJ56_06000 59718383786a3e29d5617961023f532b 700 Pfam PF02824 TGS domain 388 447 1.2E-20 T 15-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 NJ56_06000 59718383786a3e29d5617961023f532b 700 Gene3D G3DSA:3.30.460.10 193 325 5.7E-48 T 15-10-2018 NJ56_06000 59718383786a3e29d5617961023f532b 700 Pfam PF13291 ACT domain 620 697 1.9E-15 T 15-10-2018 IPR002912 ACT domain NJ56_06000 59718383786a3e29d5617961023f532b 700 SUPERFAMILY SSF81271 375 447 6.32E-21 T 15-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 NJ56_06000 59718383786a3e29d5617961023f532b 700 Pfam PF13328 HD domain 26 175 5.5E-53 T 15-10-2018 IPR003607 HD/PDEase domain NJ56_06000 59718383786a3e29d5617961023f532b 700 Gene3D G3DSA:3.30.70.260 621 700 5.2E-13 T 15-10-2018 NJ56_06000 59718383786a3e29d5617961023f532b 700 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 1.1E-35 T 15-10-2018 IPR007685 RelA/SpoT GO:0015969 NJ56_06000 59718383786a3e29d5617961023f532b 700 SMART SM00471 41 153 1.4E-11 T 15-10-2018 IPR003607 HD/PDEase domain NJ56_06000 59718383786a3e29d5617961023f532b 700 SUPERFAMILY SSF81301 180 392 4.41E-62 T 15-10-2018 NJ56_06000 59718383786a3e29d5617961023f532b 700 SMART SM00954 235 345 3.0E-62 T 15-10-2018 IPR007685 RelA/SpoT GO:0015969 NJ56_06000 59718383786a3e29d5617961023f532b 700 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 696 9.8E-287 T 15-10-2018 IPR004811 RelA/SpoT family GO:0015969 NJ56_06000 59718383786a3e29d5617961023f532b 700 SUPERFAMILY SSF109604 3 190 5.65E-75 T 15-10-2018 NJ56_06000 59718383786a3e29d5617961023f532b 700 Gene3D G3DSA:3.10.20.30 381 455 1.2E-29 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_06000 59718383786a3e29d5617961023f532b 700 Gene3D G3DSA:1.10.3210.10 3 190 2.0E-80 T 15-10-2018 NJ56_11365 e012c46af65285131adf18995fa733db 165 Pfam PF03918 Cytochrome C biogenesis protein 7 147 3.4E-55 T 15-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family NJ56_11365 e012c46af65285131adf18995fa733db 165 Gene3D G3DSA:1.10.8.640 18 103 2.8E-37 T 15-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily NJ56_00705 96df7604ff4894c64196272b1081b0f2 321 SMART SM00729 84 293 2.0E-16 T 15-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 NJ56_00705 96df7604ff4894c64196272b1081b0f2 321 Pfam PF04055 Radical SAM superfamily 91 251 9.3E-16 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_00705 96df7604ff4894c64196272b1081b0f2 321 SUPERFAMILY SSF102114 53 317 9.29E-69 T 15-10-2018 NJ56_00705 96df7604ff4894c64196272b1081b0f2 321 Gene3D G3DSA:3.20.20.70 82 298 9.2E-22 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_00705 96df7604ff4894c64196272b1081b0f2 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 3.7E-160 T 15-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 NJ56_00705 96df7604ff4894c64196272b1081b0f2 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 27 73 6.4E-7 T 15-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 NJ56_00705 96df7604ff4894c64196272b1081b0f2 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 156.678 T 15-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 NJ56_00705 96df7604ff4894c64196272b1081b0f2 321 PIRSF PIRSF005963 2 321 1.1E-131 T 15-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 Gene3D G3DSA:3.40.1160.10 12 295 7.3E-100 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 Gene3D G3DSA:1.20.120.1320 48 140 7.3E-100 T 15-10-2018 NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 PIRSF PIRSF000726 8 455 2.0E-149 T 15-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 ProSitePatterns PS00324 Aspartokinase signature. 12 20 - T 15-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 SUPERFAMILY SSF55021 383 454 7.63E-15 T 15-10-2018 NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 Pfam PF00696 Amino acid kinase family 10 283 3.2E-45 T 15-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 9 455 1.2E-130 T 15-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 Gene3D G3DSA:3.30.70.260 315 385 4.0E-31 T 15-10-2018 NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 10 455 8.9E-141 T 15-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 SUPERFAMILY SSF55021 302 400 1.34E-17 T 15-10-2018 NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 Gene3D G3DSA:3.30.70.260 386 455 6.8E-17 T 15-10-2018 NJ56_07770 fb0241821d27da306288d1a6365a7ebc 455 SUPERFAMILY SSF53633 10 297 3.27E-70 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 Pfam PF01612 3'-5' exonuclease 335 522 6.8E-43 T 15-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 Gene3D G3DSA:3.30.70.370 669 930 1.2E-116 T 15-10-2018 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 Gene3D G3DSA:1.20.1060.10 548 663 3.7E-39 T 15-10-2018 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 SMART SM00474 335 522 3.1E-46 T 15-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 SUPERFAMILY SSF47807 171 289 2.84E-31 T 15-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 Gene3D G3DSA:1.10.150.20 174 253 4.4E-98 T 15-10-2018 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 271 3.2E-30 T 15-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 9.6E-56 T 15-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 SUPERFAMILY SSF88723 7 170 3.93E-57 T 15-10-2018 IPR029060 PIN-like domain superfamily NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 SUPERFAMILY SSF56672 527 934 2.11E-158 T 15-10-2018 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 Pfam PF00476 DNA polymerase family A 557 931 2.0E-155 T 15-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 SUPERFAMILY SSF53098 331 523 3.18E-56 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 SMART SM00482 691 898 3.7E-118 T 15-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 Gene3D G3DSA:3.30.420.10 331 547 6.0E-71 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 SMART SM00475 7 268 1.7E-140 T 15-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 PRINTS PR00868 DNA-polymerase family A (pol I) signature 759 784 1.3E-79 T 15-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 PRINTS PR00868 DNA-polymerase family A (pol I) signature 660 682 1.3E-79 T 15-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 PRINTS PR00868 DNA-polymerase family A (pol I) signature 881 894 1.3E-79 T 15-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 PRINTS PR00868 DNA-polymerase family A (pol I) signature 683 698 1.3E-79 T 15-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 PRINTS PR00868 DNA-polymerase family A (pol I) signature 705 728 1.3E-79 T 15-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 PRINTS PR00868 DNA-polymerase family A (pol I) signature 818 829 1.3E-79 T 15-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 PRINTS PR00868 DNA-polymerase family A (pol I) signature 796 807 1.3E-79 T 15-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 PRINTS PR00868 DNA-polymerase family A (pol I) signature 735 748 1.3E-79 T 15-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 PRINTS PR00868 DNA-polymerase family A (pol I) signature 850 866 1.3E-79 T 15-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 ProSitePatterns PS00447 DNA polymerase family A signature. 759 778 - T 15-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 SMART SM00279 173 208 1.2E-13 T 15-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 Gene3D G3DSA:3.40.50.1010 9 284 4.4E-98 T 15-10-2018 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 TIGRFAM TIGR00593 pola: DNA polymerase I 9 934 1.9E-288 T 15-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_06095 60dc5a02795dfbd2f4937bddb33043d6 934 Gene3D G3DSA:1.10.150.20 714 857 1.2E-116 T 15-10-2018 NJ56_07095 09d76d357c828293b13e644159cc36d4 422 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 30 420 2.4E-122 T 15-10-2018 IPR013355 Type IV pilus secretin PilQ NJ56_07095 09d76d357c828293b13e644159cc36d4 422 PRINTS PR01032 Gene IV protein signature 348 376 3.2E-7 T 15-10-2018 NJ56_07095 09d76d357c828293b13e644159cc36d4 422 PRINTS PR01032 Gene IV protein signature 241 264 3.2E-7 T 15-10-2018 NJ56_07095 09d76d357c828293b13e644159cc36d4 422 PRINTS PR01032 Gene IV protein signature 282 305 3.2E-7 T 15-10-2018 NJ56_07095 09d76d357c828293b13e644159cc36d4 422 PRINTS PR00811 Bacterial general secretion pathway protein D signature 129 139 2.1E-9 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_07095 09d76d357c828293b13e644159cc36d4 422 PRINTS PR00811 Bacterial general secretion pathway protein D signature 408 422 2.1E-9 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_07095 09d76d357c828293b13e644159cc36d4 422 PRINTS PR00811 Bacterial general secretion pathway protein D signature 385 403 2.1E-9 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_07095 09d76d357c828293b13e644159cc36d4 422 SMART SM00965 53 100 5.3E-4 T 15-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 NJ56_07095 09d76d357c828293b13e644159cc36d4 422 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 366 399 - T 15-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 NJ56_07095 09d76d357c828293b13e644159cc36d4 422 Pfam PF03958 Bacterial type II/III secretion system short domain 133 191 3.4E-9 T 15-10-2018 IPR005644 NolW-like NJ56_07095 09d76d357c828293b13e644159cc36d4 422 Pfam PF00263 Bacterial type II and III secretion system protein 261 420 7.4E-48 T 15-10-2018 IPR004846 Type II/III secretion system GO:0009306 NJ56_07095 09d76d357c828293b13e644159cc36d4 422 Gene3D G3DSA:3.30.1370.120 129 189 9.9E-8 T 15-10-2018 IPR038591 NolW-like superfamily NJ56_07095 09d76d357c828293b13e644159cc36d4 422 Gene3D G3DSA:3.55.50.30 21 125 6.5E-26 T 15-10-2018 NJ56_06690 20b39615b0f8ae812836e5da6dd63db4 326 SMART SM00382 32 231 2.5E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_06690 20b39615b0f8ae812836e5da6dd63db4 326 SUPERFAMILY SSF52540 3 253 7.76E-65 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06690 20b39615b0f8ae812836e5da6dd63db4 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 2.8E-17 T 15-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 NJ56_06690 20b39615b0f8ae812836e5da6dd63db4 326 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_06690 20b39615b0f8ae812836e5da6dd63db4 326 Gene3D G3DSA:3.40.50.300 1 321 4.4E-93 T 15-10-2018 NJ56_06690 20b39615b0f8ae812836e5da6dd63db4 326 Pfam PF00005 ABC transporter 24 181 1.0E-26 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_06690 20b39615b0f8ae812836e5da6dd63db4 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 315 4.1E-25 T 15-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 SUPERFAMILY SSF53098 2 210 1.61E-62 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 Hamap MF_01899 Ribonuclease D [rnd]. 3 371 45.917 T 15-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 Pfam PF00570 HRDC domain 213 279 8.0E-16 T 15-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 SUPERFAMILY SSF47819 296 372 5.62E-22 T 15-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 SMART SM00341 210 289 3.6E-16 T 15-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 TIGRFAM TIGR01388 rnd: ribonuclease D 5 370 1.1E-146 T 15-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 SMART SM00474 3 171 1.2E-44 T 15-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 Gene3D G3DSA:3.30.420.10 1 194 1.4E-64 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 SUPERFAMILY SSF47819 194 300 6.11E-29 T 15-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 Pfam PF01612 3'-5' exonuclease 3 167 1.8E-37 T 15-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 Gene3D G3DSA:1.10.150.80 294 373 8.3E-28 T 15-10-2018 NJ56_15750 7a23296e5a64f21b76c7850a39647ec3 373 Gene3D G3DSA:1.10.150.80 195 293 4.0E-22 T 15-10-2018 NJ56_17545 b627e7a87ff99ee5417b879dfb0ccb23 283 Gene3D G3DSA:3.40.250.10 151 276 5.3E-42 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_17545 b627e7a87ff99ee5417b879dfb0ccb23 283 SMART SM00450 156 276 6.9E-22 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_17545 b627e7a87ff99ee5417b879dfb0ccb23 283 SMART SM00450 7 133 7.9E-22 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_17545 b627e7a87ff99ee5417b879dfb0ccb23 283 SUPERFAMILY SSF52821 160 280 4.98E-35 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_17545 b627e7a87ff99ee5417b879dfb0ccb23 283 ProSitePatterns PS00683 Rhodanese C-terminal signature. 260 270 - T 15-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 NJ56_17545 b627e7a87ff99ee5417b879dfb0ccb23 283 Pfam PF00581 Rhodanese-like domain 159 272 2.1E-13 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_17545 b627e7a87ff99ee5417b879dfb0ccb23 283 Pfam PF00581 Rhodanese-like domain 8 129 5.0E-17 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_17545 b627e7a87ff99ee5417b879dfb0ccb23 283 SUPERFAMILY SSF52821 1 151 1.02E-39 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_17545 b627e7a87ff99ee5417b879dfb0ccb23 283 Gene3D G3DSA:3.40.250.10 2 150 7.5E-46 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 498 516 1.6E-19 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 613 629 1.6E-19 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 641 657 1.6E-19 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 673 698 1.6E-19 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 Gene3D G3DSA:3.40.1110.10 349 547 3.8E-286 T 15-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 Gene3D G3DSA:2.70.150.10 34 241 3.8E-286 T 15-10-2018 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 SUPERFAMILY SSF81653 128 238 1.57E-30 T 15-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 Pfam PF00690 Cation transporter/ATPase, N-terminus 19 85 1.9E-20 T 15-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 609 730 1.5E-34 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 98 360 3.0E-40 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 Gene3D G3DSA:1.20.1110.10 69 896 3.8E-286 T 15-10-2018 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 Pfam PF00689 Cation transporting ATPase, C-terminus 726 897 4.6E-42 T 15-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 Pfam PF00122 E1-E2 ATPase 126 319 4.1E-53 T 15-10-2018 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 562 572 1.3E-40 T 15-10-2018 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 665 677 1.3E-40 T 15-10-2018 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 540 551 1.3E-40 T 15-10-2018 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 176 190 1.3E-40 T 15-10-2018 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 641 660 1.3E-40 T 15-10-2018 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 339 353 1.3E-40 T 15-10-2018 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 Pfam PF00702 haloacid dehalogenase-like hydrolase 335 655 6.7E-23 T 15-10-2018 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 Gene3D G3DSA:3.40.50.1000 336 686 3.8E-286 T 15-10-2018 IPR023214 HAD superfamily NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 SUPERFAMILY SSF81660 346 544 7.19E-44 T 15-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 SMART SM00831 18 91 2.3E-35 T 15-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 341 347 - T 15-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 SUPERFAMILY SSF56784 337 744 2.0E-62 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_03090 41f4455bdbf102256a21d07cf94293cb 908 SUPERFAMILY SSF81665 17 902 1.44E-118 T 15-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 NJ56_09640 0502400fa8a0414378d65a875dce2806 281 SUPERFAMILY SSF55620 185 268 5.93E-9 T 15-10-2018 NJ56_09640 0502400fa8a0414378d65a875dce2806 281 Gene3D G3DSA:3.30.1130.10 144 281 7.4E-59 T 15-10-2018 NJ56_09640 0502400fa8a0414378d65a875dce2806 281 TIGRFAM TIGR03138 QueF: queuine synthase 10 281 6.0E-127 T 15-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 NJ56_09640 0502400fa8a0414378d65a875dce2806 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 163.822 T 15-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 NJ56_09640 0502400fa8a0414378d65a875dce2806 281 PIRSF PIRSF004750 6 281 4.1E-125 T 15-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 NJ56_09640 0502400fa8a0414378d65a875dce2806 281 Pfam PF14489 QueF-like protein 195 269 1.4E-26 T 15-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 NJ56_09640 0502400fa8a0414378d65a875dce2806 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 131 9.6E-49 T 15-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 NJ56_09640 0502400fa8a0414378d65a875dce2806 281 Gene3D G3DSA:3.30.1130.10 21 139 1.9E-44 T 15-10-2018 NJ56_09185 251b44685a461dce697d5af1fa3a4917 104 Gene3D G3DSA:2.102.10.10 1 102 8.3E-31 T 15-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 NJ56_09185 251b44685a461dce697d5af1fa3a4917 104 Pfam PF00355 Rieske [2Fe-2S] domain 2 89 5.6E-20 T 15-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NJ56_09185 251b44685a461dce697d5af1fa3a4917 104 SUPERFAMILY SSF50022 1 101 2.36E-31 T 15-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 NJ56_04280 1b6ba245ccc875cac9653fe67424c5b1 575 Pfam PF11412 Disulphide bond corrector protein DsbC 33 143 1.9E-35 T 15-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain NJ56_04280 1b6ba245ccc875cac9653fe67424c5b1 575 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 180 385 6.8E-21 T 15-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 NJ56_04280 1b6ba245ccc875cac9653fe67424c5b1 575 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 574 40.179 T 15-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 NJ56_04280 1b6ba245ccc875cac9653fe67424c5b1 575 SUPERFAMILY SSF52833 458 571 1.08E-23 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_04280 1b6ba245ccc875cac9653fe67424c5b1 575 Pfam PF13899 Thioredoxin-like 472 547 4.5E-13 T 15-10-2018 NJ56_04280 1b6ba245ccc875cac9653fe67424c5b1 575 SUPERFAMILY SSF74863 32 146 3.14E-41 T 15-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily NJ56_04280 1b6ba245ccc875cac9653fe67424c5b1 575 Gene3D G3DSA:2.60.40.1250 24 158 1.7E-46 T 15-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily NJ56_04280 1b6ba245ccc875cac9653fe67424c5b1 575 Gene3D G3DSA:3.40.30.10 449 575 1.2E-34 T 15-10-2018 NJ56_13555 f62692e52a6a5c0beefed362be7f5c17 349 Pfam PF00005 ABC transporter 19 163 7.0E-35 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_13555 f62692e52a6a5c0beefed362be7f5c17 349 Gene3D G3DSA:3.40.50.300 2 264 1.8E-67 T 15-10-2018 NJ56_13555 f62692e52a6a5c0beefed362be7f5c17 349 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_13555 f62692e52a6a5c0beefed362be7f5c17 349 SUPERFAMILY SSF50331 256 340 1.36E-5 T 15-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal NJ56_13555 f62692e52a6a5c0beefed362be7f5c17 349 SMART SM00382 28 213 1.3E-15 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_13555 f62692e52a6a5c0beefed362be7f5c17 349 SUPERFAMILY SSF52540 4 239 2.85E-70 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_13110 64396a70810cb913d3cb08f3958740b1 429 SUPERFAMILY SSF64518 1 429 5.23E-96 T 15-10-2018 NJ56_13110 64396a70810cb913d3cb08f3958740b1 429 Gene3D G3DSA:1.20.1330.10 44 175 1.5E-72 T 15-10-2018 NJ56_13110 64396a70810cb913d3cb08f3958740b1 429 Gene3D G3DSA:2.30.220.10 190 288 1.5E-72 T 15-10-2018 NJ56_13110 64396a70810cb913d3cb08f3958740b1 429 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 139 4.9E-42 T 15-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NJ56_13110 64396a70810cb913d3cb08f3958740b1 429 Pfam PF00700 Bacterial flagellin C-terminal helical region 344 428 2.6E-30 T 15-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NJ56_13110 64396a70810cb913d3cb08f3958740b1 429 Gene3D G3DSA:1.20.58.1830 4 32 1.5E-72 T 15-10-2018 NJ56_13110 64396a70810cb913d3cb08f3958740b1 429 Gene3D G3DSA:1.10.8.410 377 429 3.9E-23 T 15-10-2018 NJ56_13110 64396a70810cb913d3cb08f3958740b1 429 Gene3D G3DSA:2.170.280.10 176 324 1.5E-72 T 15-10-2018 NJ56_13110 64396a70810cb913d3cb08f3958740b1 429 PRINTS PR00207 Flagellin signature 110 133 7.2E-30 T 15-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NJ56_13110 64396a70810cb913d3cb08f3958740b1 429 PRINTS PR00207 Flagellin signature 36 53 7.2E-30 T 15-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NJ56_13110 64396a70810cb913d3cb08f3958740b1 429 PRINTS PR00207 Flagellin signature 75 94 7.2E-30 T 15-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NJ56_16415 d90e072cc74372bea3aa2c809b13758d 278 Gene3D G3DSA:3.40.50.1220 41 261 6.7E-81 T 15-10-2018 NJ56_16415 d90e072cc74372bea3aa2c809b13758d 278 Gene3D G3DSA:3.30.1600.10 55 191 6.7E-81 T 15-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily NJ56_16415 d90e072cc74372bea3aa2c809b13758d 278 SUPERFAMILY SSF52467 41 267 8.31E-73 T 15-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily NJ56_16415 d90e072cc74372bea3aa2c809b13758d 278 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 39 269 58.591 T 15-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 NJ56_16415 d90e072cc74372bea3aa2c809b13758d 278 Pfam PF02146 Sir2 family 46 219 1.2E-50 T 15-10-2018 IPR003000 Sirtuin family GO:0070403 NJ56_06355 324eacdadb96fec0143bb5179969cfc1 308 Pfam PF00419 Fimbrial protein 176 308 9.8E-12 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_06355 324eacdadb96fec0143bb5179969cfc1 308 Gene3D G3DSA:2.60.40.1090 185 307 3.0E-24 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_06355 324eacdadb96fec0143bb5179969cfc1 308 Gene3D G3DSA:2.60.40.3310 32 184 5.5E-11 T 15-10-2018 NJ56_06355 324eacdadb96fec0143bb5179969cfc1 308 SUPERFAMILY SSF49401 183 308 5.97E-20 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_14890 a245b41d66efef7151bbe22d8cb9f263 241 SMART SM00448 2 112 4.3E-31 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_14890 a245b41d66efef7151bbe22d8cb9f263 241 Gene3D G3DSA:1.10.10.10 119 238 3.3E-35 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_14890 a245b41d66efef7151bbe22d8cb9f263 241 SMART SM00862 155 231 2.8E-17 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_14890 a245b41d66efef7151bbe22d8cb9f263 241 Gene3D G3DSA:3.40.50.2300 1 118 2.5E-28 T 15-10-2018 NJ56_14890 a245b41d66efef7151bbe22d8cb9f263 241 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 5.9E-19 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_14890 a245b41d66efef7151bbe22d8cb9f263 241 SUPERFAMILY SSF52172 1 188 1.51E-32 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_14890 a245b41d66efef7151bbe22d8cb9f263 241 Pfam PF00072 Response regulator receiver domain 4 112 5.0E-20 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00940 becd52a7d785a8436d99e7197a507b99 70 Pfam PF13275 S4 domain 8 68 3.0E-22 T 15-10-2018 NJ56_00940 becd52a7d785a8436d99e7197a507b99 70 SUPERFAMILY SSF55174 6 69 1.7E-18 T 15-10-2018 NJ56_00940 becd52a7d785a8436d99e7197a507b99 70 Gene3D G3DSA:3.10.290.10 1 70 1.4E-25 T 15-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 NJ56_08780 0172ad196ade620c4e016b7285251eb8 740 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 28 643 50.677 T 15-10-2018 IPR022946 Uncharacterised protein family UPF0313 NJ56_08780 0172ad196ade620c4e016b7285251eb8 740 SUPERFAMILY SSF102114 373 617 1.57E-10 T 15-10-2018 NJ56_08780 0172ad196ade620c4e016b7285251eb8 740 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 28 641 1.5E-266 T 15-10-2018 IPR022946 Uncharacterised protein family UPF0313 NJ56_08780 0172ad196ade620c4e016b7285251eb8 740 Pfam PF11842 Domain of unknown function (DUF3362) 591 731 6.1E-44 T 15-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal NJ56_08780 0172ad196ade620c4e016b7285251eb8 740 Pfam PF08497 Radical SAM N-terminal 28 376 5.5E-147 T 15-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal NJ56_08780 0172ad196ade620c4e016b7285251eb8 740 SMART SM00729 373 623 3.7E-5 T 15-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 NJ56_08780 0172ad196ade620c4e016b7285251eb8 740 Pfam PF04055 Radical SAM superfamily 377 582 1.3E-18 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_08780 0172ad196ade620c4e016b7285251eb8 740 Gene3D G3DSA:3.80.30.20 372 624 1.1E-12 T 15-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe NJ56_08780 0172ad196ade620c4e016b7285251eb8 740 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 377 397 - T 15-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 NJ56_05450 9935fc8e4ca86ed81934f06939170f91 616 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 1.6E-262 T 15-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 NJ56_05450 9935fc8e4ca86ed81934f06939170f91 616 SUPERFAMILY SSF52016 421 610 1.1E-59 T 15-10-2018 NJ56_05450 9935fc8e4ca86ed81934f06939170f91 616 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 15-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 NJ56_05450 9935fc8e4ca86ed81934f06939170f91 616 Gene3D G3DSA:3.50.30.80 421 573 1.1E-55 T 15-10-2018 NJ56_05450 9935fc8e4ca86ed81934f06939170f91 616 Pfam PF00920 Dehydratase family 34 607 3.0E-217 T 15-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 NJ56_05450 9935fc8e4ca86ed81934f06939170f91 616 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 15-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 NJ56_05450 9935fc8e4ca86ed81934f06939170f91 616 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 45.141 T 15-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 NJ56_05450 9935fc8e4ca86ed81934f06939170f91 616 SUPERFAMILY SSF143975 3 420 3.66E-132 T 15-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 NJ56_02165 1075ed044aa09eefe7284322cffbd09f 219 Pfam PF00813 FliP family 12 209 9.0E-64 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_02165 1075ed044aa09eefe7284322cffbd09f 219 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 48 67 4.7E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_02165 1075ed044aa09eefe7284322cffbd09f 219 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 142 162 4.7E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_02165 1075ed044aa09eefe7284322cffbd09f 219 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 187 212 4.7E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_02165 1075ed044aa09eefe7284322cffbd09f 219 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 9 28 4.7E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_02165 1075ed044aa09eefe7284322cffbd09f 219 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 28 48 4.7E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_02165 1075ed044aa09eefe7284322cffbd09f 219 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 163 184 4.7E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_02165 1075ed044aa09eefe7284322cffbd09f 219 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 142 157 - T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_02165 1075ed044aa09eefe7284322cffbd09f 219 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 190 202 - T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_02165 1075ed044aa09eefe7284322cffbd09f 219 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 8 209 1.2E-81 T 15-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 PIRSF PIRSF000149 1 337 3.5E-130 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 1.3E-29 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 1.3E-29 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 1.3E-29 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 1.3E-29 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 1.3E-29 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 4 328 6.7E-185 T 15-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 SUPERFAMILY SSF51735 1 179 4.05E-54 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 2 337 64.848 T 15-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 SUPERFAMILY SSF55347 155 317 1.82E-55 T 15-10-2018 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 Gene3D G3DSA:3.40.50.720 4 328 3.7E-129 T 15-10-2018 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 104 6.2E-33 T 15-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 15-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 316 2.8E-52 T 15-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 Gene3D G3DSA:3.30.360.10 154 318 3.7E-129 T 15-10-2018 NJ56_09195 aa28f9c1aef04f691d183ea19b03cfb4 338 SMART SM00846 3 155 1.2E-77 T 15-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07305 3c24c9bc92c2a5f819cb6a09dc9e142d 240 Pfam PF08348 YheO-like PAS domain 29 137 1.1E-35 T 15-10-2018 IPR013559 YheO-like NJ56_07305 3c24c9bc92c2a5f819cb6a09dc9e142d 240 Pfam PF13309 HTH domain 171 228 3.2E-19 T 15-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain NJ56_07305 3c24c9bc92c2a5f819cb6a09dc9e142d 240 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 27 153 4.0E-63 T 15-10-2018 IPR013559 YheO-like NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 SUPERFAMILY SSF48179 634 724 1.36E-25 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 SUPERFAMILY SSF52096 20 312 7.85E-65 T 15-10-2018 IPR029045 ClpP/crotonase-like domain superfamily NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 502 527 - T 15-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 Hamap MF_01617 Fatty acid oxidation complex subunit alpha [fadJ]. 14 724 52.419 T 15-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 Gene3D G3DSA:3.90.226.10 17 317 2.2E-92 T 15-10-2018 NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 SUPERFAMILY SSF48179 505 603 1.53E-27 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 324 502 1.9E-56 T 15-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 505 598 2.7E-23 T 15-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 636 719 2.0E-6 T 15-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 SUPERFAMILY SSF51735 320 502 1.32E-49 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 Pfam PF00378 Enoyl-CoA hydratase/isomerase 30 216 9.7E-41 T 15-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 Gene3D G3DSA:1.10.1040.50 508 719 1.2E-65 T 15-10-2018 NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 Gene3D G3DSA:3.40.50.720 322 507 6.7E-60 T 15-10-2018 NJ56_11395 a2cc1751bdb3bdd10be6cc95ecd11a27 734 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 20 724 0.0 T 15-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 NJ56_05875 b4d303375a3f3f276924d4e2f3ef3c40 425 Pfam PF00534 Glycosyl transferases group 1 248 398 8.0E-11 T 15-10-2018 IPR001296 Glycosyl transferase, family 1 NJ56_05875 b4d303375a3f3f276924d4e2f3ef3c40 425 Gene3D G3DSA:3.40.50.2000 217 403 1.2E-65 T 15-10-2018 NJ56_05875 b4d303375a3f3f276924d4e2f3ef3c40 425 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 33 211 1.2E-65 T 15-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 NJ56_05875 b4d303375a3f3f276924d4e2f3ef3c40 425 SUPERFAMILY SSF53756 57 419 8.9E-16 T 15-10-2018 NJ56_05875 b4d303375a3f3f276924d4e2f3ef3c40 425 Gene3D G3DSA:3.40.50.11720 41 209 3.5E-47 T 15-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 NJ56_14865 b02fb0dee01f8c3fb289bf089ae052d8 183 Pfam PF01161 Phosphatidylethanolamine-binding protein 39 180 1.8E-36 T 15-10-2018 IPR008914 Phosphatidylethanolamine-binding protein NJ56_14865 b02fb0dee01f8c3fb289bf089ae052d8 183 Gene3D G3DSA:3.90.280.10 20 182 8.4E-56 T 15-10-2018 IPR036610 PEBP-like superfamily NJ56_14865 b02fb0dee01f8c3fb289bf089ae052d8 183 SUPERFAMILY SSF49777 22 181 5.76E-54 T 15-10-2018 IPR036610 PEBP-like superfamily NJ56_14865 b02fb0dee01f8c3fb289bf089ae052d8 183 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 41 180 2.9E-49 T 15-10-2018 IPR005247 YbhB/YbcL NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Gene3D G3DSA:2.40.160.50 426 795 3.6E-144 T 15-10-2018 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Gene3D G3DSA:3.10.20.310 347 425 4.1E-26 T 15-10-2018 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 795 8.1E-285 T 15-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Gene3D G3DSA:3.10.20.310 175 264 4.3E-23 T 15-10-2018 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 PIRSF PIRSF006076 1 795 3.8E-254 T 15-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Pfam PF07244 Surface antigen variable number repeat 348 421 9.2E-15 T 15-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Pfam PF07244 Surface antigen variable number repeat 266 344 6.6E-11 T 15-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Pfam PF07244 Surface antigen variable number repeat 176 263 3.1E-15 T 15-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Pfam PF07244 Surface antigen variable number repeat 92 172 5.3E-11 T 15-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Gene3D G3DSA:3.10.20.310 19 91 6.4E-21 T 15-10-2018 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 795 26.07 T 15-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Gene3D G3DSA:3.10.20.310 92 174 1.0E-15 T 15-10-2018 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Pfam PF01103 Surface antigen 448 795 6.9E-100 T 15-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 NJ56_09725 bb52de4c5ca9ef8e8e67159adbfeef0f 795 Gene3D G3DSA:3.10.20.310 265 346 3.1E-16 T 15-10-2018 NJ56_06145 8a2d52a8131031f20e90ed24693d6002 229 SUPERFAMILY SSF48008 107 225 1.05E-22 T 15-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal NJ56_06145 8a2d52a8131031f20e90ed24693d6002 229 SMART SM00895 106 227 1.6E-20 T 15-10-2018 IPR011711 GntR, C-terminal NJ56_06145 8a2d52a8131031f20e90ed24693d6002 229 SMART SM00345 18 77 8.9E-17 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_06145 8a2d52a8131031f20e90ed24693d6002 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 2.0E-9 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_06145 8a2d52a8131031f20e90ed24693d6002 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 2.0E-9 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_06145 8a2d52a8131031f20e90ed24693d6002 229 Pfam PF07729 FCD domain 109 225 4.8E-24 T 15-10-2018 IPR011711 GntR, C-terminal NJ56_06145 8a2d52a8131031f20e90ed24693d6002 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 77 1.4E-16 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_06145 8a2d52a8131031f20e90ed24693d6002 229 Gene3D G3DSA:1.20.120.530 101 229 1.3E-24 T 15-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal NJ56_06145 8a2d52a8131031f20e90ed24693d6002 229 SUPERFAMILY SSF46785 10 81 1.18E-18 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_06145 8a2d52a8131031f20e90ed24693d6002 229 Gene3D G3DSA:1.10.10.10 1 79 1.5E-17 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_08075 85b34257f9d00ea4dc029acf7d5d2f9f 182 SUPERFAMILY SSF158710 36 179 1.44E-52 T 15-10-2018 IPR023153 PSPTO4464-like domain superfamily NJ56_08075 85b34257f9d00ea4dc029acf7d5d2f9f 182 Gene3D G3DSA:1.10.60.30 111 182 5.7E-29 T 15-10-2018 NJ56_08075 85b34257f9d00ea4dc029acf7d5d2f9f 182 PIRSF PIRSF016183 10 182 3.8E-73 T 15-10-2018 IPR006839 Ribosome-associated, YjgA NJ56_08075 85b34257f9d00ea4dc029acf7d5d2f9f 182 Pfam PF04751 Protein of unknown function (DUF615) 25 175 6.4E-57 T 15-10-2018 IPR006839 Ribosome-associated, YjgA NJ56_08075 85b34257f9d00ea4dc029acf7d5d2f9f 182 Gene3D G3DSA:1.10.60.30 35 109 9.7E-22 T 15-10-2018 NJ56_08075 85b34257f9d00ea4dc029acf7d5d2f9f 182 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 15 179 24.003 T 15-10-2018 IPR006839 Ribosome-associated, YjgA NJ56_13205 574e611ab493f20ef5c06567883f7977 617 Hamap MF_00203 UvrABC system protein C [uvrC]. 11 614 29.67 T 15-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 NJ56_13205 574e611ab493f20ef5c06567883f7977 617 Gene3D G3DSA:3.30.420.340 384 559 7.4E-48 T 15-10-2018 IPR038476 UvrC homology region 2 superfamily NJ56_13205 574e611ab493f20ef5c06567883f7977 617 SUPERFAMILY SSF47781 528 616 2.76E-18 T 15-10-2018 IPR010994 RuvA domain 2-like NJ56_13205 574e611ab493f20ef5c06567883f7977 617 Pfam PF01541 GIY-YIG catalytic domain 25 100 5.4E-12 T 15-10-2018 IPR000305 GIY-YIG endonuclease NJ56_13205 574e611ab493f20ef5c06567883f7977 617 Pfam PF02151 UvrB/uvrC motif 212 244 6.5E-8 T 15-10-2018 IPR001943 UVR domain GO:0005515 NJ56_13205 574e611ab493f20ef5c06567883f7977 617 SUPERFAMILY SSF46600 198 250 4.05E-12 T 15-10-2018 IPR036876 UVR domain superfamily NJ56_13205 574e611ab493f20ef5c06567883f7977 617 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 392 549 1.4E-47 T 15-10-2018 IPR001162 UvrC family homology region NJ56_13205 574e611ab493f20ef5c06567883f7977 617 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 15 596 1.4E-228 T 15-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 NJ56_13205 574e611ab493f20ef5c06567883f7977 617 Gene3D G3DSA:3.40.1440.10 12 109 2.0E-32 T 15-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 NJ56_13205 574e611ab493f20ef5c06567883f7977 617 SUPERFAMILY SSF82771 24 107 1.96E-24 T 15-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 NJ56_13205 574e611ab493f20ef5c06567883f7977 617 Gene3D G3DSA:1.10.150.20 562 617 7.6E-23 T 15-10-2018 NJ56_13205 574e611ab493f20ef5c06567883f7977 617 SMART SM00465 24 105 1.0E-23 T 15-10-2018 IPR000305 GIY-YIG endonuclease NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 SUPERFAMILY SSF160240 300 361 1.44E-8 T 15-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 Gene3D G3DSA:1.20.1510.10 6 203 5.6E-59 T 15-10-2018 IPR027469 Cation efflux transmembrane domain superfamily NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 SUPERFAMILY SSF160240 381 453 3.66E-9 T 15-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 SUPERFAMILY SSF160240 211 283 9.42E-10 T 15-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 Gene3D G3DSA:3.30.70.1350 367 458 7.1E-8 T 15-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 SUPERFAMILY SSF161111 6 204 7.06E-49 T 15-10-2018 IPR027469 Cation efflux transmembrane domain superfamily NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 8 273 5.5E-60 T 15-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 Gene3D G3DSA:3.30.70.1350 204 283 5.1E-10 T 15-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 Pfam PF01545 Cation efflux family 12 202 2.0E-43 T 15-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 Gene3D G3DSA:3.30.70.1350 284 363 1.3E-9 T 15-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 Pfam PF16916 Dimerisation domain of Zinc Transporter 380 453 1.2E-7 T 15-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 Pfam PF16916 Dimerisation domain of Zinc Transporter 295 361 1.8E-7 T 15-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain NJ56_17435 9ef2d6a31cf0bf5e10b4557467623af3 463 Pfam PF16916 Dimerisation domain of Zinc Transporter 211 279 2.4E-8 T 15-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain NJ56_11530 fe7e3b59921d40bdbf6130af0c339e45 423 Gene3D G3DSA:3.40.1190.10 1 287 1.2E-95 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_11530 fe7e3b59921d40bdbf6130af0c339e45 423 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 15-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 NJ56_11530 fe7e3b59921d40bdbf6130af0c339e45 423 Pfam PF02875 Mur ligase family, glutamate ligase domain 287 340 3.0E-5 T 15-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 NJ56_11530 fe7e3b59921d40bdbf6130af0c339e45 423 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 414 4.5E-106 T 15-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 NJ56_11530 fe7e3b59921d40bdbf6130af0c339e45 423 Gene3D G3DSA:3.90.190.20 288 417 1.1E-35 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_11530 fe7e3b59921d40bdbf6130af0c339e45 423 SUPERFAMILY SSF53244 286 416 1.05E-33 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_11530 fe7e3b59921d40bdbf6130af0c339e45 423 SUPERFAMILY SSF53623 13 285 1.41E-85 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_11530 fe7e3b59921d40bdbf6130af0c339e45 423 Pfam PF08245 Mur ligase middle domain 54 197 5.5E-8 T 15-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 NJ56_11530 fe7e3b59921d40bdbf6130af0c339e45 423 PIRSF PIRSF001563 6 421 9.5E-107 T 15-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 Pfam PF06628 Catalase-related immune-responsive 416 477 1.3E-20 T 15-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 Gene3D G3DSA:2.40.180.10 3 480 1.9E-232 T 15-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 335 343 - T 15-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 PIRSF PIRSF038928 1 480 8.7E-220 T 15-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 SUPERFAMILY SSF56634 4 479 2.62E-210 T 15-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 ProSitePatterns PS00438 Catalase proximal active site signature. 45 61 - T 15-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 PRINTS PR00067 Catalase signature 85 103 5.2E-72 T 15-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 PRINTS PR00067 Catalase signature 290 317 5.2E-72 T 15-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 PRINTS PR00067 Catalase signature 322 348 5.2E-72 T 15-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 PRINTS PR00067 Catalase signature 22 45 5.2E-72 T 15-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 PRINTS PR00067 Catalase signature 106 123 5.2E-72 T 15-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 PRINTS PR00067 Catalase signature 125 143 5.2E-72 T 15-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 SMART SM01060 9 393 1.6E-280 T 15-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_11775 2bb3df751a83b02e2ffcded7ec86ef4a 480 Pfam PF00199 Catalase 9 389 7.3E-188 T 15-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_07610 e2e11ba09c79616af160cca4605c194e 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 257 435 1.4E-90 T 15-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 NJ56_07610 e2e11ba09c79616af160cca4605c194e 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 9 256 5.8E-116 T 15-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 NJ56_07610 e2e11ba09c79616af160cca4605c194e 435 ProSitePatterns PS00161 Isocitrate lyase signature. 194 199 - T 15-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 NJ56_07610 e2e11ba09c79616af160cca4605c194e 435 Gene3D G3DSA:3.20.20.60 1 418 3.2E-188 T 15-10-2018 NJ56_07610 e2e11ba09c79616af160cca4605c194e 435 Pfam PF00463 Isocitrate lyase family 9 256 5.6E-63 T 15-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 NJ56_07610 e2e11ba09c79616af160cca4605c194e 435 Pfam PF00463 Isocitrate lyase family 258 435 7.0E-50 T 15-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 NJ56_07610 e2e11ba09c79616af160cca4605c194e 435 SUPERFAMILY SSF51621 6 418 2.69E-155 T 15-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 NJ56_07610 e2e11ba09c79616af160cca4605c194e 435 PIRSF PIRSF001362 1 435 8.6E-226 T 15-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 SUPERFAMILY SSF140990 402 601 3.92E-72 T 15-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 100 593 3.0E-246 T 15-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 SMART SM00382 184 323 1.9E-26 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 Gene3D G3DSA:1.10.8.60 322 396 5.3E-28 T 15-10-2018 NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 Gene3D G3DSA:2.40.50.920 24 101 1.2E-36 T 15-10-2018 NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 Gene3D G3DSA:3.40.50.300 141 320 1.1E-70 T 15-10-2018 NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 Gene3D G3DSA:1.20.58.760 397 600 3.5E-69 T 15-10-2018 NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 607 37.262 T 15-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 Pfam PF06480 FtsH Extracellular 5 93 1.4E-15 T 15-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 Pfam PF01434 Peptidase family M41 382 591 2.2E-81 T 15-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 SUPERFAMILY SSF52540 142 391 2.96E-72 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 188 320 6.4E-46 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_03825 42d033c44a01f2f070a67bd9e2e094a8 644 ProSitePatterns PS00674 AAA-protein family signature. 291 309 - T 15-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 NJ56_02890 e9ce100f65bfebade68762aa21bd43d8 330 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 34 321 2.9E-106 T 15-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 NJ56_02890 e9ce100f65bfebade68762aa21bd43d8 330 Gene3D G3DSA:3.40.718.10 1 330 2.3E-129 T 15-10-2018 NJ56_02890 e9ce100f65bfebade68762aa21bd43d8 330 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 4 328 36.273 T 15-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 NJ56_02890 e9ce100f65bfebade68762aa21bd43d8 330 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 324 2.3E-128 T 15-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 NJ56_02890 e9ce100f65bfebade68762aa21bd43d8 330 SUPERFAMILY SSF53659 6 327 2.08E-111 T 15-10-2018 NJ56_01270 81dc9e21bd57d4e28f610e4a2c3b373f 47 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.919 T 15-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01270 81dc9e21bd57d4e28f610e4a2c3b373f 47 SUPERFAMILY SSF57840 8 41 5.1E-14 T 15-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01270 81dc9e21bd57d4e28f610e4a2c3b373f 47 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 9 41 1.1E-9 T 15-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01270 81dc9e21bd57d4e28f610e4a2c3b373f 47 Pfam PF00444 Ribosomal protein L36 1 41 3.4E-16 T 15-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01270 81dc9e21bd57d4e28f610e4a2c3b373f 47 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 15-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14195 6ee23589ff627554d240e5aa0a1d483b 296 Pfam PF00005 ABC transporter 29 174 5.6E-30 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_14195 6ee23589ff627554d240e5aa0a1d483b 296 SMART SM00382 36 222 4.3E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_14195 6ee23589ff627554d240e5aa0a1d483b 296 Gene3D G3DSA:3.40.50.300 10 249 1.9E-61 T 15-10-2018 NJ56_14195 6ee23589ff627554d240e5aa0a1d483b 296 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_14195 6ee23589ff627554d240e5aa0a1d483b 296 SUPERFAMILY SSF52540 7 238 3.12E-56 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 110 137 1.0E-68 T 15-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 234 256 1.0E-68 T 15-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 88 110 1.0E-68 T 15-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 256 281 1.0E-68 T 15-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 11 37 1.0E-68 T 15-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 43 55 1.0E-68 T 15-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 SUPERFAMILY SSF53328 88 281 9.42E-61 T 15-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 Pfam PF00551 Formyl transferase 88 264 1.8E-53 T 15-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 6 282 45.865 T 15-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 PIRSF PIRSF036480 6 282 3.5E-115 T 15-10-2018 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 282 2.9E-129 T 15-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 Gene3D G3DSA:3.30.70.260 3 84 2.0E-15 T 15-10-2018 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 Pfam PF01842 ACT domain 10 70 5.3E-7 T 15-10-2018 IPR002912 ACT domain NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 SUPERFAMILY SSF55021 8 58 2.21E-8 T 15-10-2018 NJ56_15525 663f702f63c6a735fe9280aac658f2c3 282 Gene3D G3DSA:3.40.50.170 86 282 8.6E-67 T 15-10-2018 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 SUPERFAMILY SSF48108 396 554 5.49E-53 T 15-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Gene3D G3DSA:1.10.1030.10 404 522 4.4E-39 T 15-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 710 724 - T 15-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Gene3D G3DSA:3.40.50.1380 937 1073 2.9E-35 T 15-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 SUPERFAMILY SSF52440 1 127 4.75E-50 T 15-10-2018 IPR016185 Pre-ATP-grasp domain superfamily NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 15-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1063 13.153 T 15-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 SMART SM01096 424 547 1.4E-73 T 15-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 15-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 SUPERFAMILY SSF52440 558 676 1.58E-48 T 15-10-2018 IPR016185 Pre-ATP-grasp domain superfamily NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 839 846 - T 15-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Pfam PF02142 MGS-like domain 957 1041 4.7E-18 T 15-10-2018 IPR011607 Methylglyoxal synthase-like domain NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1068 13.354 T 15-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.5E-64 T 15-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.5E-64 T 15-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.5E-64 T 15-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.5E-64 T 15-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.5E-64 T 15-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.5E-64 T 15-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.5E-64 T 15-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 SUPERFAMILY SSF56059 674 934 6.72E-104 T 15-10-2018 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 SUPERFAMILY SSF56059 128 401 6.54E-109 T 15-10-2018 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 15-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Gene3D G3DSA:3.40.50.20 524 663 5.8E-64 T 15-10-2018 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 674 876 5.0E-37 T 15-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 2.6E-76 T 15-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Gene3D G3DSA:3.40.50.20 1 116 1.5E-50 T 15-10-2018 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 7.4E-40 T 15-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 SUPERFAMILY SSF52335 939 1071 1.31E-34 T 15-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 SMART SM00851 956 1042 1.3E-30 T 15-10-2018 IPR011607 Methylglyoxal synthase-like domain NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Gene3D G3DSA:3.30.470.20 119 403 2.3E-132 T 15-10-2018 NJ56_02935 02489f03656e3cfa57e964a6edf86397 1077 Gene3D G3DSA:3.30.470.20 666 936 1.4E-125 T 15-10-2018 NJ56_07450 5d074737357872eb4878a7a728009ee7 167 SUPERFAMILY SSF54768 9 75 3.87E-23 T 15-10-2018 NJ56_07450 5d074737357872eb4878a7a728009ee7 167 Gene3D G3DSA:3.30.230.10 74 167 9.8E-38 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_07450 5d074737357872eb4878a7a728009ee7 167 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 74 1.8E-28 T 15-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 NJ56_07450 5d074737357872eb4878a7a728009ee7 167 Gene3D G3DSA:3.30.160.20 1 73 2.3E-33 T 15-10-2018 NJ56_07450 5d074737357872eb4878a7a728009ee7 167 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 15-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site NJ56_07450 5d074737357872eb4878a7a728009ee7 167 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.416 T 15-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 NJ56_07450 5d074737357872eb4878a7a728009ee7 167 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 1.0E-29 T 15-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 NJ56_07450 5d074737357872eb4878a7a728009ee7 167 SUPERFAMILY SSF54211 79 159 7.59E-27 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_07450 5d074737357872eb4878a7a728009ee7 167 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 9.7E-70 T 15-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 NJ56_02300 6203fedc2968608b48990f28853e757d 254 Pfam PF01975 Survival protein SurE 4 181 4.3E-56 T 15-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 NJ56_02300 6203fedc2968608b48990f28853e757d 254 Gene3D G3DSA:3.40.1210.10 1 254 1.4E-102 T 15-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 NJ56_02300 6203fedc2968608b48990f28853e757d 254 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 3 233 1.7E-72 T 15-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 NJ56_02300 6203fedc2968608b48990f28853e757d 254 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 2 250 38.573 T 15-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 NJ56_02300 6203fedc2968608b48990f28853e757d 254 SUPERFAMILY SSF64167 2 248 2.49E-81 T 15-10-2018 NJ56_06170 7e7f56b3187890f5a6c42d583f7e2913 501 Gene3D G3DSA:3.40.50.300 1 247 8.7E-55 T 15-10-2018 NJ56_06170 7e7f56b3187890f5a6c42d583f7e2913 501 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_06170 7e7f56b3187890f5a6c42d583f7e2913 501 Pfam PF00005 ABC transporter 22 169 4.9E-28 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_06170 7e7f56b3187890f5a6c42d583f7e2913 501 Gene3D G3DSA:3.40.50.300 255 500 5.1E-48 T 15-10-2018 NJ56_06170 7e7f56b3187890f5a6c42d583f7e2913 501 SUPERFAMILY SSF52540 3 231 4.99E-56 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06170 7e7f56b3187890f5a6c42d583f7e2913 501 Pfam PF00005 ABC transporter 269 423 1.6E-24 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_06170 7e7f56b3187890f5a6c42d583f7e2913 501 SMART SM00382 277 472 4.2E-10 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_06170 7e7f56b3187890f5a6c42d583f7e2913 501 SMART SM00382 29 226 5.2E-8 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_06170 7e7f56b3187890f5a6c42d583f7e2913 501 SUPERFAMILY SSF52540 257 482 2.57E-50 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01025 f94847a0ffe7dbf47fac277a640b9329 228 Gene3D G3DSA:3.40.50.300 4 228 1.5E-63 T 15-10-2018 NJ56_01025 f94847a0ffe7dbf47fac277a640b9329 228 SMART SM00382 35 223 2.6E-12 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_01025 f94847a0ffe7dbf47fac277a640b9329 228 Pfam PF00005 ABC transporter 27 174 1.1E-30 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_01025 f94847a0ffe7dbf47fac277a640b9329 228 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_01025 f94847a0ffe7dbf47fac277a640b9329 228 SUPERFAMILY SSF52540 6 226 1.54E-62 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 15-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 SUPERFAMILY SSF55973 112 232 5.49E-52 T 15-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 Gene3D G3DSA:3.30.300.10 11 270 1.6E-179 T 15-10-2018 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 369 2.7E-69 T 15-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 15-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 PIRSF PIRSF000497 1 382 1.0E-174 T 15-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 SUPERFAMILY SSF55973 233 382 2.24E-71 T 15-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 380 5.1E-200 T 15-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 Gene3D G3DSA:3.30.300.10 103 372 1.6E-179 T 15-10-2018 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 5.2E-45 T 15-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 60.11 T 15-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 Gene3D G3DSA:3.30.300.10 5 233 1.6E-179 T 15-10-2018 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 SUPERFAMILY SSF55973 3 109 3.81E-48 T 15-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 NJ56_09175 894c414b9c38e90ac705c0c83e36f8ff 384 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 1.4E-43 T 15-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 SMART SM00091 80 146 1.6E-7 T 15-10-2018 IPR000014 PAS domain NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 SUPERFAMILY SSF55021 2 69 2.89E-6 T 15-10-2018 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 Gene3D G3DSA:3.30.70.260 1 81 1.8E-27 T 15-10-2018 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 Gene3D G3DSA:1.10.10.60 456 513 1.2E-26 T 15-10-2018 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 SUPERFAMILY SSF55785 77 151 3.24E-8 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 SMART SM00382 226 370 1.5E-8 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 Gene3D G3DSA:1.10.8.60 378 455 1.2E-19 T 15-10-2018 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 292 307 - T 15-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 230 243 - T 15-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 SUPERFAMILY SSF46689 459 513 1.37E-9 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 SUPERFAMILY SSF52540 206 447 4.03E-63 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 419 428 - T 15-10-2018 IPR025944 Sigma-54 interaction domain, conserved site NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 Gene3D G3DSA:3.30.450.20 82 190 9.3E-27 T 15-10-2018 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 466 513 9.1E-28 T 15-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 Pfam PF00158 Sigma-54 interaction domain 207 372 1.0E-60 T 15-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 Pfam PF00989 PAS fold 82 128 7.5E-6 T 15-10-2018 IPR013767 PAS fold GO:0006355 NJ56_14755 efd36e748d3a5edcbc62033bb30af9d9 535 Gene3D G3DSA:3.40.50.300 193 377 5.4E-60 T 15-10-2018 NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 320 423 1.3E-20 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 Gene3D G3DSA:1.10.287.130 162 272 2.2E-20 T 15-10-2018 NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 SUPERFAMILY SSF55874 260 423 1.05E-38 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 2.1E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 2.1E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 2.1E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 2.1E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 SUPERFAMILY SSF47384 194 271 5.49E-11 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 Gene3D G3DSA:3.30.565.10 275 431 2.8E-33 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 SMART SM00387 315 425 7.7E-34 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 SMART SM00304 158 210 6.9E-4 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_14885 4f2606e726c22e29c8006670b995bd78 434 SMART SM00388 211 271 2.0E-6 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 462 6.4E-193 T 15-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 463 39.144 T 15-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 SUPERFAMILY SSF52374 1 313 3.75E-100 T 15-10-2018 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 SMART SM00840 341 402 3.6E-29 T 15-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 7.6E-141 T 15-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 Gene3D G3DSA:1.20.120.640 306 463 7.2E-55 T 15-10-2018 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 SUPERFAMILY SSF47323 316 462 3.92E-42 T 15-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 6.2E-30 T 15-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 6.2E-30 T 15-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 6.2E-30 T 15-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 6.2E-30 T 15-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 Gene3D G3DSA:3.40.50.620 1 305 3.7E-133 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_00995 ae50b49318d53d5eb8c3e8f8397c151c 463 Pfam PF09190 DALR domain 341 402 3.0E-25 T 15-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 NJ56_07390 37dd206a14d77ee1c07f68e9ddf79c19 110 Gene3D G3DSA:3.90.470.10 1 110 2.4E-46 T 15-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 NJ56_07390 37dd206a14d77ee1c07f68e9ddf79c19 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 2.2E-50 T 15-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07390 37dd206a14d77ee1c07f68e9ddf79c19 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 9.7E-38 T 15-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 NJ56_07390 37dd206a14d77ee1c07f68e9ddf79c19 110 SUPERFAMILY SSF54843 1 109 2.35E-42 T 15-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 NJ56_07390 37dd206a14d77ee1c07f68e9ddf79c19 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 15-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07390 37dd206a14d77ee1c07f68e9ddf79c19 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 28.77 T 15-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 Gene3D G3DSA:2.60.40.1840 444 545 4.6E-35 T 15-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 Pfam PF01433 Peptidase family M1 domain 208 439 1.4E-58 T 15-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 548 870 5.0E-121 T 15-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 SUPERFAMILY SSF55486 204 450 1.03E-73 T 15-10-2018 NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 Gene3D G3DSA:1.10.390.10 280 443 6.3E-65 T 15-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 869 0.0 T 15-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 Gene3D G3DSA:1.10.1740.60 195 279 2.1E-40 T 15-10-2018 NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 SUPERFAMILY SSF63737 1 193 4.58E-48 T 15-10-2018 NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 Gene3D G3DSA:1.25.50.10 546 870 3.2E-124 T 15-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 444 544 3.7E-32 T 15-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 126 141 2.4E-9 T 15-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 258 268 2.4E-9 T 15-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 313 325 2.4E-9 T 15-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 176 191 2.4E-9 T 15-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 294 309 2.4E-9 T 15-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NJ56_16805 284e53d3b8f1403fc7730454bbcfdcde 871 Gene3D G3DSA:2.60.40.1730 15 194 6.2E-71 T 15-10-2018 NJ56_02425 a58afb21352fde4dedc53944dff9325e 505 Gene3D G3DSA:1.10.3210.10 149 257 7.7E-15 T 15-10-2018 NJ56_02425 a58afb21352fde4dedc53944dff9325e 505 Gene3D G3DSA:1.10.3210.10 1 148 3.8E-43 T 15-10-2018 NJ56_02425 a58afb21352fde4dedc53944dff9325e 505 Hamap MF_00030 Deoxyguanosinetriphosphate triphosphohydrolase [dgt]. 1 505 51.794 T 15-10-2018 IPR020779 dNTP triphosphohydrolase, type 1 GO:0000287|GO:0006203|GO:0008832 KEGG: 00230+3.1.5.1 NJ56_02425 a58afb21352fde4dedc53944dff9325e 505 Gene3D G3DSA:1.10.3410.10 260 390 1.0E-20 T 15-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 NJ56_02425 a58afb21352fde4dedc53944dff9325e 505 Pfam PF13286 Phosphohydrolase-associated domain 468 500 1.1E-5 T 15-10-2018 IPR026875 Phosphohydrolase-associated domain NJ56_02425 a58afb21352fde4dedc53944dff9325e 505 SUPERFAMILY SSF109604 23 502 3.62E-62 T 15-10-2018 NJ56_02425 a58afb21352fde4dedc53944dff9325e 505 SMART SM00471 62 282 7.3E-11 T 15-10-2018 IPR003607 HD/PDEase domain NJ56_02425 a58afb21352fde4dedc53944dff9325e 505 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 30 503 1.1E-123 T 15-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 NJ56_02425 a58afb21352fde4dedc53944dff9325e 505 Pfam PF01966 HD domain 66 134 3.3E-10 T 15-10-2018 IPR006674 HD domain NJ56_01645 2a9edf402a94506e065405d24d67c6da 174 Hamap MF_01269 Shikimate kinase 2 [aroL]. 1 173 42.688 T 15-10-2018 IPR027544 Shikimate kinase 2 GO:0004765|GO:0009073 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 NJ56_01645 2a9edf402a94506e065405d24d67c6da 174 Pfam PF01202 Shikimate kinase 11 166 4.3E-45 T 15-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 NJ56_01645 2a9edf402a94506e065405d24d67c6da 174 SUPERFAMILY SSF52540 3 168 5.46E-28 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01645 2a9edf402a94506e065405d24d67c6da 174 ProSitePatterns PS01128 Shikimate kinase signature. 58 82 - T 15-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 NJ56_01645 2a9edf402a94506e065405d24d67c6da 174 PRINTS PR01100 Shikimate kinase family signature 95 112 2.4E-22 T 15-10-2018 NJ56_01645 2a9edf402a94506e065405d24d67c6da 174 PRINTS PR01100 Shikimate kinase family signature 29 42 2.4E-22 T 15-10-2018 NJ56_01645 2a9edf402a94506e065405d24d67c6da 174 PRINTS PR01100 Shikimate kinase family signature 5 20 2.4E-22 T 15-10-2018 NJ56_01645 2a9edf402a94506e065405d24d67c6da 174 PRINTS PR01100 Shikimate kinase family signature 57 65 2.4E-22 T 15-10-2018 NJ56_01645 2a9edf402a94506e065405d24d67c6da 174 PRINTS PR01100 Shikimate kinase family signature 74 83 2.4E-22 T 15-10-2018 NJ56_01645 2a9edf402a94506e065405d24d67c6da 174 Gene3D G3DSA:3.40.50.300 1 169 1.3E-51 T 15-10-2018 NJ56_01645 2a9edf402a94506e065405d24d67c6da 174 Hamap MF_00109 Shikimate kinase [aroK]. 2 169 25.346 T 15-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 NJ56_12400 f9ef346c2bd3b764da7b6c8045610318 476 Gene3D G3DSA:1.20.1280.70 359 420 1.6E-27 T 15-10-2018 NJ56_12400 f9ef346c2bd3b764da7b6c8045610318 476 Pfam PF08411 Exonuclease C-terminal 211 472 2.1E-110 T 15-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 NJ56_12400 f9ef346c2bd3b764da7b6c8045610318 476 SMART SM00479 9 202 0.0022 T 15-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III NJ56_12400 f9ef346c2bd3b764da7b6c8045610318 476 PIRSF PIRSF000977 2 476 2.0E-207 T 15-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 NJ56_12400 f9ef346c2bd3b764da7b6c8045610318 476 Pfam PF00929 Exonuclease 12 192 2.8E-27 T 15-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III NJ56_12400 f9ef346c2bd3b764da7b6c8045610318 476 Gene3D G3DSA:2.30.30.450 213 353 6.2E-59 T 15-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily NJ56_12400 f9ef346c2bd3b764da7b6c8045610318 476 Gene3D G3DSA:3.30.420.10 1 200 1.5E-70 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_12400 f9ef346c2bd3b764da7b6c8045610318 476 SUPERFAMILY SSF53098 9 474 1.86E-136 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_05150 d07a02738950848b989d2892e3c8ffac 222 Hamap MF_02088 Probable queuosine precursor transporter. 7 213 15.248 T 15-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 NJ56_05150 d07a02738950848b989d2892e3c8ffac 222 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 12 205 1.7E-60 T 15-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 NJ56_05150 d07a02738950848b989d2892e3c8ffac 222 Pfam PF02592 Putative vitamin uptake transporter 43 199 2.7E-33 T 15-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 NJ56_13145 34474284d61f5f3343e904254b633432 251 SUPERFAMILY SSF52540 4 243 3.59E-79 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_13145 34474284d61f5f3343e904254b633432 251 PIRSF PIRSF039085 1 249 1.7E-111 T 15-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 NJ56_13145 34474284d61f5f3343e904254b633432 251 Pfam PF00005 ABC transporter 19 173 4.7E-35 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_13145 34474284d61f5f3343e904254b633432 251 Gene3D G3DSA:3.40.50.300 1 250 1.5E-83 T 15-10-2018 NJ56_13145 34474284d61f5f3343e904254b633432 251 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_13145 34474284d61f5f3343e904254b633432 251 SMART SM00382 28 221 2.6E-19 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_03770 6c168a4c0993cb6123ef97330fa4ee17 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 6.5E-39 T 15-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03770 6c168a4c0993cb6123ef97330fa4ee17 89 SUPERFAMILY SSF47060 3 89 2.03E-34 T 15-10-2018 IPR009068 S15/NS1, RNA-binding NJ56_03770 6c168a4c0993cb6123ef97330fa4ee17 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 15-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_03770 6c168a4c0993cb6123ef97330fa4ee17 89 Gene3D G3DSA:1.10.287.10 2 89 2.5E-37 T 15-10-2018 NJ56_03770 6c168a4c0993cb6123ef97330fa4ee17 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.962 T 15-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03770 6c168a4c0993cb6123ef97330fa4ee17 89 Pfam PF00312 Ribosomal protein S15 8 88 1.5E-37 T 15-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_03770 6c168a4c0993cb6123ef97330fa4ee17 89 SMART SM01387 8 88 7.9E-52 T 15-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_03770 6c168a4c0993cb6123ef97330fa4ee17 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 2.0E-37 T 15-10-2018 NJ56_06860 2686595792d67d6e478458dcdb0daed7 331 SUPERFAMILY SSF47413 5 62 1.2E-11 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_06860 2686595792d67d6e478458dcdb0daed7 331 SUPERFAMILY SSF53822 63 317 2.94E-56 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_06860 2686595792d67d6e478458dcdb0daed7 331 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 65 312 4.0E-32 T 15-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain NJ56_06860 2686595792d67d6e478458dcdb0daed7 331 SMART SM00354 5 75 6.0E-21 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_06860 2686595792d67d6e478458dcdb0daed7 331 Gene3D G3DSA:3.40.50.2300 161 292 1.7E-62 T 15-10-2018 NJ56_06860 2686595792d67d6e478458dcdb0daed7 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 52 9.3E-15 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_06860 2686595792d67d6e478458dcdb0daed7 331 Gene3D G3DSA:1.10.260.40 1 61 1.1E-13 T 15-10-2018 NJ56_06860 2686595792d67d6e478458dcdb0daed7 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 15-10-2018 NJ56_06860 2686595792d67d6e478458dcdb0daed7 331 Gene3D G3DSA:3.40.50.2300 67 308 1.7E-62 T 15-10-2018 NJ56_17185 04a3b1dd969cc0911eac8c7d0c182b2d 254 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 15-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 NJ56_17185 04a3b1dd969cc0911eac8c7d0c182b2d 254 SUPERFAMILY SSF100950 76 237 1.17E-26 T 15-10-2018 IPR037171 NagB/RpiA transferase-like NJ56_17185 04a3b1dd969cc0911eac8c7d0c182b2d 254 SMART SM00420 8 57 1.6E-7 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_17185 04a3b1dd969cc0911eac8c7d0c182b2d 254 Pfam PF08220 DeoR-like helix-turn-helix domain 8 55 2.2E-10 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_17185 04a3b1dd969cc0911eac8c7d0c182b2d 254 Pfam PF00455 DeoR C terminal sensor domain 77 235 1.5E-46 T 15-10-2018 IPR014036 DeoR C-terminal sensor domain NJ56_17185 04a3b1dd969cc0911eac8c7d0c182b2d 254 SMART SM01134 75 236 2.8E-62 T 15-10-2018 NJ56_07115 bccbc085ed4de8c608da849e394cb29b 270 SUPERFAMILY SSF53335 5 268 1.46E-73 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_07115 bccbc085ed4de8c608da849e394cb29b 270 PIRSF PIRSF000398 1 270 7.5E-65 T 15-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 NJ56_07115 bccbc085ed4de8c608da849e394cb29b 270 Gene3D G3DSA:1.10.1020.10 57 156 1.0E-86 T 15-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 NJ56_07115 bccbc085ed4de8c608da849e394cb29b 270 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 15-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NJ56_07115 bccbc085ed4de8c608da849e394cb29b 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 5.0E-19 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_07115 bccbc085ed4de8c608da849e394cb29b 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 5.0E-19 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_07115 bccbc085ed4de8c608da849e394cb29b 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 5.0E-19 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_07115 bccbc085ed4de8c608da849e394cb29b 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 5.0E-19 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_07115 bccbc085ed4de8c608da849e394cb29b 270 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 252 1.1E-73 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_07115 bccbc085ed4de8c608da849e394cb29b 270 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 268 1.5E-96 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_07115 bccbc085ed4de8c608da849e394cb29b 270 Gene3D G3DSA:3.40.50.150 7 239 1.0E-86 T 15-10-2018 NJ56_09630 3b87733905ca621cad20fd94f005551e 251 SUPERFAMILY SSF47807 160 243 1.18E-23 T 15-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily NJ56_09630 3b87733905ca621cad20fd94f005551e 251 Hamap MF_01192 Flap endonuclease Xni [xni]. 2 251 44.253 T 15-10-2018 IPR022895 Flap endonuclease Xni GO:0048256 NJ56_09630 3b87733905ca621cad20fd94f005551e 251 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 160 250 5.2E-26 T 15-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 NJ56_09630 3b87733905ca621cad20fd94f005551e 251 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 154 2.0E-30 T 15-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 NJ56_09630 3b87733905ca621cad20fd94f005551e 251 Gene3D G3DSA:3.40.50.1010 1 161 2.9E-57 T 15-10-2018 NJ56_09630 3b87733905ca621cad20fd94f005551e 251 SUPERFAMILY SSF88723 4 159 2.16E-39 T 15-10-2018 IPR029060 PIN-like domain superfamily NJ56_09630 3b87733905ca621cad20fd94f005551e 251 Gene3D G3DSA:1.10.150.20 162 251 9.2E-29 T 15-10-2018 NJ56_09630 3b87733905ca621cad20fd94f005551e 251 SMART SM00475 3 250 1.7E-91 T 15-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 NJ56_09630 3b87733905ca621cad20fd94f005551e 251 SMART SM00279 162 197 3.9E-10 T 15-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 NJ56_15810 bd2b27fa29b41c5db0da69ae6cf83a76 320 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 14 306 1.5E-91 T 15-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 NJ56_15810 bd2b27fa29b41c5db0da69ae6cf83a76 320 PIRSF PIRSF026649 11 315 1.9E-91 T 15-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 NJ56_15810 bd2b27fa29b41c5db0da69ae6cf83a76 320 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 5 311 53.634 T 15-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 NJ56_15810 bd2b27fa29b41c5db0da69ae6cf83a76 320 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 11 315 2.7E-133 T 15-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 NJ56_18020 678b17df9c7fb34a4a4ff0d83c79e3a3 212 Pfam PF13384 Homeodomain-like domain 171 203 6.7E-6 T 15-10-2018 NJ56_18020 678b17df9c7fb34a4a4ff0d83c79e3a3 212 SMART SM00857 3 159 2.1E-35 T 15-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NJ56_18020 678b17df9c7fb34a4a4ff0d83c79e3a3 212 Gene3D G3DSA:3.40.50.1390 2 169 5.6E-29 T 15-10-2018 NJ56_18020 678b17df9c7fb34a4a4ff0d83c79e3a3 212 ProSitePatterns PS00398 Site-specific recombinases signature 2. 62 74 - T 15-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 NJ56_18020 678b17df9c7fb34a4a4ff0d83c79e3a3 212 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 15-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 NJ56_18020 678b17df9c7fb34a4a4ff0d83c79e3a3 212 Pfam PF00239 Resolvase, N terminal domain 5 158 1.5E-25 T 15-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NJ56_18020 678b17df9c7fb34a4a4ff0d83c79e3a3 212 SUPERFAMILY SSF53041 1 158 8.11E-28 T 15-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 SUPERFAMILY SSF82693 659 834 2.62E-7 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 Gene3D G3DSA:3.30.2090.10 179 269 9.3E-292 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 0.0 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 SUPERFAMILY SSF82693 40 135 3.92E-23 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 Gene3D G3DSA:3.30.70.1440 650 847 9.3E-292 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 SUPERFAMILY SSF82714 706 785 1.96E-15 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 Gene3D G3DSA:3.30.2090.10 701 789 9.3E-292 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 SUPERFAMILY SSF82866 290 490 1.83E-45 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 SUPERFAMILY SSF82866 811 1010 1.01E-41 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 SUPERFAMILY SSF82693 136 324 2.01E-21 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 Gene3D G3DSA:3.30.70.1430 40 797 9.3E-292 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.6E-85 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.6E-85 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.6E-85 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 PRINTS PR00702 Acriflavin resistance protein family signature 605 619 1.6E-85 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 1.6E-85 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.6E-85 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.6E-85 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.6E-85 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.6E-85 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 SUPERFAMILY SSF82714 183 265 8.37E-16 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 Gene3D G3DSA:1.20.1640.10 503 1005 9.3E-292 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 Gene3D G3DSA:3.30.70.1320 135 326 9.3E-292 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 SUPERFAMILY SSF82693 555 650 1.54E-14 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 Gene3D G3DSA:1.20.1640.10 10 502 9.3E-292 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 Gene3D G3DSA:3.30.70.1430 557 649 9.3E-292 T 15-10-2018 NJ56_10740 acc8e4e00fd8b75ab73a1572e1c46d16 1024 Hamap MF_01424 Multidrug resistance protein MdtC [mdtC]. 1 1024 27.124 T 15-10-2018 IPR023931 Multidrug resistance protein MdtC NJ56_02060 084d72c0211c024a4eb3c245f9050057 199 PRINTS PR00885 Bacterial general secretion pathway protein H signature 23 37 3.2E-11 T 15-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 NJ56_02060 084d72c0211c024a4eb3c245f9050057 199 PRINTS PR00885 Bacterial general secretion pathway protein H signature 142 157 3.2E-11 T 15-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 NJ56_02060 084d72c0211c024a4eb3c245f9050057 199 PRINTS PR00885 Bacterial general secretion pathway protein H signature 8 22 3.2E-11 T 15-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 NJ56_02060 084d72c0211c024a4eb3c245f9050057 199 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 11 167 1.8E-18 T 15-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 NJ56_02060 084d72c0211c024a4eb3c245f9050057 199 SUPERFAMILY SSF54523 13 107 2.04E-9 T 15-10-2018 NJ56_02060 084d72c0211c024a4eb3c245f9050057 199 Gene3D G3DSA:3.55.40.10 38 186 4.7E-22 T 15-10-2018 NJ56_02060 084d72c0211c024a4eb3c245f9050057 199 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 33 1.0E-4 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_02060 084d72c0211c024a4eb3c245f9050057 199 Pfam PF12019 Type II transport protein GspH 46 170 5.2E-7 T 15-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 NJ56_13170 43ac9c1800e8c4999414cd7262496ea0 713 PIRSF PIRSF009393 1 712 2.5E-284 T 15-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 NJ56_13170 43ac9c1800e8c4999414cd7262496ea0 713 SUPERFAMILY SSF53383 130 562 1.38E-105 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_13170 43ac9c1800e8c4999414cd7262496ea0 713 Gene3D G3DSA:3.40.640.10 130 424 3.9E-93 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_13170 43ac9c1800e8c4999414cd7262496ea0 713 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 15-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 NJ56_13170 43ac9c1800e8c4999414cd7262496ea0 713 Gene3D G3DSA:3.90.1150.10 425 594 2.4E-69 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_13170 43ac9c1800e8c4999414cd7262496ea0 713 SUPERFAMILY SSF55904 567 708 8.63E-45 T 15-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 NJ56_13170 43ac9c1800e8c4999414cd7262496ea0 713 Gene3D G3DSA:3.90.100.10 595 713 4.0E-48 T 15-10-2018 NJ56_13170 43ac9c1800e8c4999414cd7262496ea0 713 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 3.3E-27 T 15-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 NJ56_13170 43ac9c1800e8c4999414cd7262496ea0 713 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 700 5.0E-46 T 15-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 NJ56_13170 43ac9c1800e8c4999414cd7262496ea0 713 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 2.4E-196 T 15-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 NJ56_13170 43ac9c1800e8c4999414cd7262496ea0 713 Gene3D G3DSA:3.40.50.2300 1 129 3.1E-55 T 15-10-2018 NJ56_14795 662d5ac59afce348cd56e405fb83b231 110 SUPERFAMILY SSF103481 5 105 7.98E-20 T 15-10-2018 NJ56_14795 662d5ac59afce348cd56e405fb83b231 110 Pfam PF00893 Small Multidrug Resistance protein 4 94 3.6E-27 T 15-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 NJ56_14795 662d5ac59afce348cd56e405fb83b231 110 Gene3D G3DSA:1.10.3730.20 1 110 2.4E-36 T 15-10-2018 NJ56_05555 22521db6b25868981e189caf93df00e1 215 Hamap MF_01190 HTH-type transcriptional repressor FabR [fabR]. 5 213 52.645 T 15-10-2018 IPR023764 Transcriptional repressor HTH, FabR NJ56_05555 22521db6b25868981e189caf93df00e1 215 Gene3D G3DSA:1.10.10.60 5 56 1.2E-22 T 15-10-2018 NJ56_05555 22521db6b25868981e189caf93df00e1 215 SUPERFAMILY SSF46689 5 81 1.65E-12 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_05555 22521db6b25868981e189caf93df00e1 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 62 2.5E-7 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_05555 22521db6b25868981e189caf93df00e1 215 Gene3D G3DSA:1.10.357.10 57 213 3.8E-42 T 15-10-2018 NJ56_01360 2249e19ccd4a69cfde453df1171d6322 627 SUPERFAMILY SSF109998 39 240 9.22E-36 T 15-10-2018 IPR027304 Trigger factor/SurA domain superfamily NJ56_01360 2249e19ccd4a69cfde453df1171d6322 627 Pfam PF13624 SurA N-terminal domain 1 166 2.8E-50 T 15-10-2018 NJ56_01360 2249e19ccd4a69cfde453df1171d6322 627 SUPERFAMILY SSF54534 225 357 6.54E-22 T 15-10-2018 NJ56_01360 2249e19ccd4a69cfde453df1171d6322 627 Gene3D G3DSA:3.10.50.40 266 365 7.9E-30 T 15-10-2018 NJ56_01360 2249e19ccd4a69cfde453df1171d6322 627 Pfam PF13145 PPIC-type PPIASE domain 249 370 3.0E-24 T 15-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 NJ56_01360 2249e19ccd4a69cfde453df1171d6322 627 Pfam PF13145 PPIC-type PPIASE domain 377 486 1.2E-6 T 15-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 NJ56_01360 2249e19ccd4a69cfde453df1171d6322 627 Gene3D G3DSA:1.10.4030.30 39 195 1.7E-14 T 15-10-2018 NJ56_15890 11fc9d502505d1722b4bbe870eee7d53 323 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 8 321 9.3E-145 T 15-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 NJ56_15890 11fc9d502505d1722b4bbe870eee7d53 323 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 9.9E-165 T 15-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like NJ56_15890 11fc9d502505d1722b4bbe870eee7d53 323 SUPERFAMILY SSF53335 91 323 5.24E-32 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_15890 11fc9d502505d1722b4bbe870eee7d53 323 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 12 322 54.218 T 15-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 NJ56_15890 11fc9d502505d1722b4bbe870eee7d53 323 Gene3D G3DSA:3.40.50.150 89 323 1.3E-20 T 15-10-2018 NJ56_07940 b35aa6e9977e10a02a1243efe8e50ad3 98 SUPERFAMILY SSF46689 4 98 5.38E-27 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_07940 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 8.3E-13 T 15-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NJ56_07940 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 8.3E-13 T 15-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NJ56_07940 b35aa6e9977e10a02a1243efe8e50ad3 98 Gene3D G3DSA:1.10.10.60 1 98 2.7E-35 T 15-10-2018 NJ56_07940 b35aa6e9977e10a02a1243efe8e50ad3 98 PIRSF PIRSF002097 1 98 7.4E-46 T 15-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 NJ56_07940 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 5.1E-34 T 15-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 NJ56_07940 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 5.1E-34 T 15-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 NJ56_07940 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 5.1E-34 T 15-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 NJ56_07940 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 5.1E-34 T 15-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 NJ56_07940 b35aa6e9977e10a02a1243efe8e50ad3 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 33.512 T 15-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 NJ56_07940 b35aa6e9977e10a02a1243efe8e50ad3 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.8E-14 T 15-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NJ56_10930 942e890f68d393e17b3ea7d2bc6bf0f7 375 Gene3D G3DSA:3.30.70.360 179 292 6.2E-123 T 15-10-2018 NJ56_10930 942e890f68d393e17b3ea7d2bc6bf0f7 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 3 375 51.65 T 15-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 NJ56_10930 942e890f68d393e17b3ea7d2bc6bf0f7 375 SUPERFAMILY SSF55031 179 286 1.42E-26 T 15-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain NJ56_10930 942e890f68d393e17b3ea7d2bc6bf0f7 375 Gene3D G3DSA:3.40.630.10 8 360 6.2E-123 T 15-10-2018 NJ56_10930 942e890f68d393e17b3ea7d2bc6bf0f7 375 Pfam PF07687 Peptidase dimerisation domain 175 282 5.3E-23 T 15-10-2018 IPR011650 Peptidase M20, dimerisation domain NJ56_10930 942e890f68d393e17b3ea7d2bc6bf0f7 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 373 3.0E-174 T 15-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 NJ56_10930 942e890f68d393e17b3ea7d2bc6bf0f7 375 Pfam PF01546 Peptidase family M20/M25/M40 62 371 5.0E-42 T 15-10-2018 IPR002933 Peptidase M20 GO:0016787 NJ56_10930 942e890f68d393e17b3ea7d2bc6bf0f7 375 SUPERFAMILY SSF53187 5 373 1.51E-63 T 15-10-2018 NJ56_10930 942e890f68d393e17b3ea7d2bc6bf0f7 375 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 61 70 - T 15-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 NJ56_06400 fe94000d3dccbf2f3084290a1290580a 361 Gene3D G3DSA:3.40.50.300 8 331 1.0E-78 T 15-10-2018 NJ56_06400 fe94000d3dccbf2f3084290a1290580a 361 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 3.7E-131 T 15-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 NJ56_06400 fe94000d3dccbf2f3084290a1290580a 361 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 361 99.443 T 15-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 NJ56_06400 fe94000d3dccbf2f3084290a1290580a 361 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 15-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 NJ56_06400 fe94000d3dccbf2f3084290a1290580a 361 Gene3D G3DSA:1.20.1050.90 120 297 1.0E-78 T 15-10-2018 NJ56_06400 fe94000d3dccbf2f3084290a1290580a 361 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 15-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 NJ56_06400 fe94000d3dccbf2f3084290a1290580a 361 SUPERFAMILY SSF52540 1 340 1.23E-38 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06400 fe94000d3dccbf2f3084290a1290580a 361 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 342 4.5E-38 T 15-10-2018 IPR003395 RecF/RecN/SMC, N-terminal NJ56_15455 7f1d692642d2ae16af35ee0cc463e48c 301 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 75 3.7E-14 T 15-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain NJ56_15455 7f1d692642d2ae16af35ee0cc463e48c 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 299 7.6E-27 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_15455 7f1d692642d2ae16af35ee0cc463e48c 301 Gene3D G3DSA:1.10.3720.10 99 297 3.0E-16 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_15455 7f1d692642d2ae16af35ee0cc463e48c 301 SUPERFAMILY SSF161098 99 282 4.71E-23 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_10200 becb8019e8ece8c65a5cfcb6823fe7e7 777 Pfam PF03288 Poxvirus D5 protein-like 675 772 1.1E-17 T 15-10-2018 IPR004968 DNA primase/nucleoside triphosphatase, C-terminal NJ56_10200 becb8019e8ece8c65a5cfcb6823fe7e7 777 SMART SM00885 339 466 5.1E-15 T 15-10-2018 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal NJ56_10200 becb8019e8ece8c65a5cfcb6823fe7e7 777 SUPERFAMILY SSF57783 30 94 3.06E-7 T 15-10-2018 NJ56_10200 becb8019e8ece8c65a5cfcb6823fe7e7 777 Gene3D G3DSA:1.10.10.10 674 773 3.9E-39 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_10200 becb8019e8ece8c65a5cfcb6823fe7e7 777 SUPERFAMILY SSF46785 675 772 1.09E-40 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_10200 becb8019e8ece8c65a5cfcb6823fe7e7 777 Pfam PF08273 Zinc-binding domain of primase-helicase 32 68 1.0E-17 T 15-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 NJ56_10200 becb8019e8ece8c65a5cfcb6823fe7e7 777 Pfam PF13362 Toprim domain 214 303 6.3E-8 T 15-10-2018 IPR006171 TOPRIM domain NJ56_10200 becb8019e8ece8c65a5cfcb6823fe7e7 777 SMART SM00778 32 68 1.2E-18 T 15-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 NJ56_10200 becb8019e8ece8c65a5cfcb6823fe7e7 777 Gene3D G3DSA:3.40.50.300 459 639 3.6E-12 T 15-10-2018 NJ56_10200 becb8019e8ece8c65a5cfcb6823fe7e7 777 SUPERFAMILY SSF52540 473 627 9.11E-16 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_10200 becb8019e8ece8c65a5cfcb6823fe7e7 777 Pfam PF08706 D5 N terminal like 373 470 8.2E-7 T 15-10-2018 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal NJ56_04105 0546597d8307a44448b2370af3ced437 313 SUPERFAMILY SSF52540 13 157 7.87E-19 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04105 0546597d8307a44448b2370af3ced437 313 Gene3D G3DSA:3.40.50.300 16 296 8.0E-106 T 15-10-2018 NJ56_04105 0546597d8307a44448b2370af3ced437 313 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 12 299 1.2E-119 T 15-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 NJ56_04105 0546597d8307a44448b2370af3ced437 313 Pfam PF01715 IPP transferase 46 291 1.3E-85 T 15-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 NJ56_04105 0546597d8307a44448b2370af3ced437 313 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 12 309 30.016 T 15-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 NJ56_04105 0546597d8307a44448b2370af3ced437 313 Gene3D G3DSA:1.10.20.140 119 190 8.0E-106 T 15-10-2018 NJ56_02765 e88ac05d768b54b7450a628635a3c4fb 146 Hamap MF_00914 L-alanine exporter AlaE [alaE]. 1 145 36.186 T 15-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 NJ56_02765 e88ac05d768b54b7450a628635a3c4fb 146 ProDom PD090021 MEMBRANE YGAW TRANSMEMBRANE INNER VV2263 Y3636 VC1828 VP1070 9 142 4.0E-52 T 15-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 NJ56_02765 e88ac05d768b54b7450a628635a3c4fb 146 Pfam PF06610 L-alanine exporter 4 142 8.6E-73 T 15-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 2.2E-30 T 15-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 SUPERFAMILY SSF47831 23 143 1.7E-34 T 15-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 Gene3D G3DSA:1.10.274.10 21 146 5.9E-83 T 15-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 15-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 8.2E-23 T 15-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 Gene3D G3DSA:3.50.30.10 4 233 5.9E-83 T 15-10-2018 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 566 3.4E-258 T 15-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 SUPERFAMILY SSF52009 125 246 1.96E-36 T 15-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 4.5E-31 T 15-10-2018 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 4.5E-31 T 15-10-2018 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 4.5E-31 T 15-10-2018 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 4.5E-31 T 15-10-2018 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 Gene3D G3DSA:3.20.20.60 234 575 6.1E-127 T 15-10-2018 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 PIRSF PIRSF000732 1 574 8.6E-218 T 15-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 252 541 8.8E-124 T 15-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 15-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 NJ56_11145 510d62ccb500fcf68ea870e4abdc2475 575 SUPERFAMILY SSF51621 252 549 7.07E-110 T 15-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 620 25.629 T 15-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 Pfam PF08676 MutL C terminal dimerisation domain 443 572 3.1E-26 T 15-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 121 1.7E-11 T 15-10-2018 NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 Gene3D G3DSA:2.30.42.20 443 619 1.3E-65 T 15-10-2018 NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 SUPERFAMILY SSF54211 191 330 1.44E-37 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 15-10-2018 IPR014762 DNA mismatch repair, conserved site NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 SMART SM00853 446 581 3.7E-15 T 15-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 SMART SM01340 212 330 1.3E-57 T 15-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 1.6E-101 T 15-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 SUPERFAMILY SSF55874 1 204 3.14E-55 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 213 329 1.5E-38 T 15-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 Gene3D G3DSA:3.30.565.10 1 216 1.7E-70 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 Gene3D G3DSA:3.30.1370.100 487 575 1.3E-65 T 15-10-2018 NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 Gene3D G3DSA:3.30.230.10 217 329 7.8E-42 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_04110 ccc3ddc5d0259b975aa070e7b09acdad 623 SUPERFAMILY SSF118116 441 618 1.29E-42 T 15-10-2018 IPR037198 MutL, C-terminal domain superfamily NJ56_09325 22c029147b3d956540e168a4cba0e44b 238 SUPERFAMILY SSF52833 88 228 7.97E-40 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_09325 22c029147b3d956540e168a4cba0e44b 238 Pfam PF13098 Thioredoxin-like domain 105 227 2.5E-29 T 15-10-2018 IPR012336 Thioredoxin-like fold NJ56_09325 22c029147b3d956540e168a4cba0e44b 238 SUPERFAMILY SSF54423 22 80 3.53E-16 T 15-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 NJ56_09325 22c029147b3d956540e168a4cba0e44b 238 Gene3D G3DSA:3.10.450.70 22 70 6.2E-22 T 15-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 NJ56_09325 22c029147b3d956540e168a4cba0e44b 238 ProSitePatterns PS00194 Thioredoxin family active site. 111 129 - T 15-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 NJ56_09325 22c029147b3d956540e168a4cba0e44b 238 Pfam PF10411 Disulfide bond isomerase protein N-terminus 29 76 7.1E-14 T 15-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal NJ56_09325 22c029147b3d956540e168a4cba0e44b 238 Gene3D G3DSA:3.40.30.10 71 230 7.4E-50 T 15-10-2018 NJ56_00740 cdf7c10a9ec2ed4e5a72878ea8e003ea 196 SMART SM00421 136 193 1.9E-8 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_00740 cdf7c10a9ec2ed4e5a72878ea8e003ea 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 139 192 5.0E-12 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_00740 cdf7c10a9ec2ed4e5a72878ea8e003ea 196 SUPERFAMILY SSF46894 131 193 9.18E-13 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_00740 cdf7c10a9ec2ed4e5a72878ea8e003ea 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 169 1.7E-5 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_00740 cdf7c10a9ec2ed4e5a72878ea8e003ea 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 181 1.7E-5 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_00740 cdf7c10a9ec2ed4e5a72878ea8e003ea 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 153 1.7E-5 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_00740 cdf7c10a9ec2ed4e5a72878ea8e003ea 196 Gene3D G3DSA:1.10.10.10 108 195 7.9E-13 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_03640 f69f12c75217aa1f9308c842e9ba5e86 154 PIRSF PIRSF000368 1 154 1.6E-58 T 15-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 NJ56_03640 f69f12c75217aa1f9308c842e9ba5e86 154 SUPERFAMILY SSF102114 16 125 1.44E-6 T 15-10-2018 NJ56_03640 f69f12c75217aa1f9308c842e9ba5e86 154 ProSitePatterns PS01087 Radical activating enzymes signature. 14 35 - T 15-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 NJ56_03640 f69f12c75217aa1f9308c842e9ba5e86 154 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 2 153 4.4E-62 T 15-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 NJ56_03640 f69f12c75217aa1f9308c842e9ba5e86 154 Gene3D G3DSA:3.20.20.70 2 154 2.7E-21 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_03640 f69f12c75217aa1f9308c842e9ba5e86 154 Pfam PF13353 4Fe-4S single cluster domain 12 151 1.3E-49 T 15-10-2018 NJ56_11955 49af60abc82101f2d563737cc15c008c 210 SMART SM00530 7 62 3.9E-8 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_11955 49af60abc82101f2d563737cc15c008c 210 Gene3D G3DSA:1.10.260.40 1 65 3.3E-18 T 15-10-2018 NJ56_11955 49af60abc82101f2d563737cc15c008c 210 SUPERFAMILY SSF51306 116 208 1.92E-27 T 15-10-2018 IPR036286 LexA/Signal peptidase-like superfamily NJ56_11955 49af60abc82101f2d563737cc15c008c 210 SUPERFAMILY SSF47413 1 67 3.49E-12 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_11955 49af60abc82101f2d563737cc15c008c 210 Pfam PF01381 Helix-turn-helix 8 62 2.1E-9 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_11955 49af60abc82101f2d563737cc15c008c 210 Gene3D G3DSA:2.10.109.10 77 209 2.2E-45 T 15-10-2018 NJ56_11955 49af60abc82101f2d563737cc15c008c 210 Pfam PF00717 Peptidase S24-like 122 196 2.1E-16 T 15-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 260 282 - T 15-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 324 331 - T 15-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 PIRSF PIRSF001500 1 379 9.4E-139 T 15-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 Gene3D G3DSA:3.40.190.10 188 273 2.1E-54 T 15-10-2018 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 Pfam PF00800 Prephenate dehydratase 105 285 7.2E-60 T 15-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 Gene3D G3DSA:1.20.59.10 1 106 1.7E-32 T 15-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 Gene3D G3DSA:3.30.70.260 290 378 1.3E-23 T 15-10-2018 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 SMART SM00830 10 90 9.9E-23 T 15-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 SUPERFAMILY SSF55021 279 376 9.04E-23 T 15-10-2018 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 Pfam PF01817 Chorismate mutase type II 10 88 7.4E-16 T 15-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 SUPERFAMILY SSF48600 6 91 3.11E-20 T 15-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 Gene3D G3DSA:3.40.190.10 107 280 2.1E-54 T 15-10-2018 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 SUPERFAMILY SSF53850 104 290 4.45E-55 T 15-10-2018 NJ56_01875 d807faa9f0b4ef7be4c60888957b3913 385 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 6 88 5.6E-34 T 15-10-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 SUPERFAMILY SSF53822 63 314 4.17E-62 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 SMART SM00354 4 74 1.5E-31 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 8.7E-20 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 SUPERFAMILY SSF47413 4 60 2.67E-16 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 Pfam PF13377 Periplasmic binding protein-like domain 168 314 1.1E-16 T 15-10-2018 NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 Gene3D G3DSA:3.40.50.2300 163 279 2.4E-67 T 15-10-2018 NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 314 3.2E-152 T 15-10-2018 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 16 26 6.2E-6 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 6 16 6.2E-6 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 Gene3D G3DSA:3.40.50.2300 68 301 2.4E-67 T 15-10-2018 NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 15-10-2018 NJ56_08110 61607a838b2789a4cab3f076f6cfed27 315 Gene3D G3DSA:1.10.260.40 1 61 6.4E-21 T 15-10-2018 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 SMART SM00929 88 128 1.2E-18 T 15-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 Gene3D G3DSA:3.40.50.740 499 687 7.2E-11 T 15-10-2018 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 123 1.4E-14 T 15-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 SUPERFAMILY SSF54292 1 77 9.7E-19 T 15-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 78 2.6E-11 T 15-10-2018 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 Gene3D G3DSA:2.20.25.90 221 274 1.1E-12 T 15-10-2018 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 SMART SM00926 221 275 1.9E-9 T 15-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 15-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 Gene3D G3DSA:3.10.20.740 1 127 1.9E-28 T 15-10-2018 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 15-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 SUPERFAMILY SSF54862 81 213 1.55E-33 T 15-10-2018 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 SUPERFAMILY SSF53706 219 687 2.06E-82 T 15-10-2018 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 Pfam PF01568 Molydopterin dinucleotide binding domain 824 890 4.5E-6 T 15-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 6.4E-10 T 15-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 SUPERFAMILY SSF50692 814 891 2.26E-12 T 15-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 Gene3D G3DSA:2.40.40.20 812 903 6.0E-8 T 15-10-2018 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 655 4.9E-203 T 15-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 Pfam PF00384 Molybdopterin oxidoreductase 555 637 5.7E-7 T 15-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11695 16e5c9c6996e7e0034a7425d9190da31 908 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 15-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_09120 6c80c3f64c064e9f9d573e5c1f6f8e72 361 Gene3D G3DSA:3.75.10.10 2 361 5.3E-139 T 15-10-2018 NJ56_09120 6c80c3f64c064e9f9d573e5c1f6f8e72 361 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 14 359 9.0E-122 T 15-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 NJ56_09120 6c80c3f64c064e9f9d573e5c1f6f8e72 361 SUPERFAMILY SSF55909 3 360 6.96E-140 T 15-10-2018 NJ56_09120 6c80c3f64c064e9f9d573e5c1f6f8e72 361 TIGRFAM TIGR03380 agmatine_aguA: agmatine deiminase 5 360 9.2E-176 T 15-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 NJ56_09120 6c80c3f64c064e9f9d573e5c1f6f8e72 361 Hamap MF_01841 Agmatine deiminase [aguA]. 5 360 60.039 T 15-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 NJ56_09300 f3469b2baa6f7348f608970302d1ba3e 330 SUPERFAMILY SSF103025 19 243 1.15E-61 T 15-10-2018 NJ56_09300 f3469b2baa6f7348f608970302d1ba3e 330 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 188 253 2.3E-24 T 15-10-2018 IPR017703 YgfZ/GcvT conserved site NJ56_09300 f3469b2baa6f7348f608970302d1ba3e 330 Gene3D G3DSA:3.30.70.1630 25 195 1.2E-58 T 15-10-2018 NJ56_09300 f3469b2baa6f7348f608970302d1ba3e 330 SUPERFAMILY SSF101790 245 327 1.11E-25 T 15-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal NJ56_09300 f3469b2baa6f7348f608970302d1ba3e 330 Gene3D G3DSA:2.40.30.160 198 319 2.3E-42 T 15-10-2018 NJ56_09300 f3469b2baa6f7348f608970302d1ba3e 330 Pfam PF01571 Aminomethyltransferase folate-binding domain 31 141 1.4E-8 T 15-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain NJ56_09300 f3469b2baa6f7348f608970302d1ba3e 330 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 323 47.856 T 15-10-2018 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 NJ56_09300 f3469b2baa6f7348f608970302d1ba3e 330 PIRSF PIRSF006487 20 286 8.8E-12 T 15-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 NJ56_09300 f3469b2baa6f7348f608970302d1ba3e 330 Gene3D G3DSA:3.30.70.1400 28 114 1.2E-58 T 15-10-2018 NJ56_15950 c52ba06cb4e6d84a08fe9e4665111ff0 95 SUPERFAMILY SSF54909 1 90 1.82E-25 T 15-10-2018 IPR011008 Dimeric alpha-beta barrel NJ56_15950 c52ba06cb4e6d84a08fe9e4665111ff0 95 Gene3D G3DSA:3.30.70.100 2 95 2.0E-30 T 15-10-2018 NJ56_15950 c52ba06cb4e6d84a08fe9e4665111ff0 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 1.2E-13 T 15-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain NJ56_08180 ccbe1448c2eb385de635a05891ed2512 187 SUPERFAMILY SSF56784 21 180 1.04E-41 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_08180 ccbe1448c2eb385de635a05891ed2512 187 Gene3D G3DSA:3.40.50.1000 2 187 9.4E-60 T 15-10-2018 IPR023214 HAD superfamily NJ56_08180 ccbe1448c2eb385de635a05891ed2512 187 PIRSF PIRSF006118 12 187 1.5E-72 T 15-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 NJ56_08180 ccbe1448c2eb385de635a05891ed2512 187 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 25 177 3.0E-68 T 15-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 NJ56_08180 ccbe1448c2eb385de635a05891ed2512 187 Pfam PF08282 haloacid dehalogenase-like hydrolase 94 158 1.9E-9 T 15-10-2018 NJ56_10455 feb63d2a5285b8e167e8bfe54626fa00 112 PIRSF PIRSF039144 1 112 3.8E-58 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_10455 feb63d2a5285b8e167e8bfe54626fa00 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.9E-44 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_10455 feb63d2a5285b8e167e8bfe54626fa00 112 Gene3D G3DSA:3.30.70.120 1 112 1.2E-48 T 15-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal NJ56_10455 feb63d2a5285b8e167e8bfe54626fa00 112 SUPERFAMILY SSF54913 1 112 7.31E-47 T 15-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta NJ56_10455 feb63d2a5285b8e167e8bfe54626fa00 112 PRINTS PR00340 P-II protein signature 2 17 1.8E-44 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_10455 feb63d2a5285b8e167e8bfe54626fa00 112 PRINTS PR00340 P-II protein signature 23 41 1.8E-44 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_10455 feb63d2a5285b8e167e8bfe54626fa00 112 PRINTS PR00340 P-II protein signature 52 75 1.8E-44 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_10455 feb63d2a5285b8e167e8bfe54626fa00 112 PRINTS PR00340 P-II protein signature 83 103 1.8E-44 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_10455 feb63d2a5285b8e167e8bfe54626fa00 112 SMART SM00938 4 105 3.4E-68 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_10455 feb63d2a5285b8e167e8bfe54626fa00 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 15-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 NJ56_10455 feb63d2a5285b8e167e8bfe54626fa00 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 15-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 NJ56_10900 3b0c889080f494738bef087abfc87d5a 237 SUPERFAMILY SSF56104 2 232 3.92E-75 T 15-10-2018 NJ56_10900 3b0c889080f494738bef087abfc87d5a 237 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 207 1.6E-77 T 15-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 NJ56_10900 3b0c889080f494738bef087abfc87d5a 237 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 15-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_10900 3b0c889080f494738bef087abfc87d5a 237 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 28.318 T 15-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_10900 3b0c889080f494738bef087abfc87d5a 237 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 15-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_10900 3b0c889080f494738bef087abfc87d5a 237 Gene3D G3DSA:3.30.200.20 7 231 5.6E-90 T 15-10-2018 NJ56_10900 3b0c889080f494738bef087abfc87d5a 237 Gene3D G3DSA:3.30.470.20 85 220 5.6E-90 T 15-10-2018 NJ56_10900 3b0c889080f494738bef087abfc87d5a 237 Pfam PF01259 SAICAR synthetase 7 230 5.6E-58 T 15-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_13035 5c6e8de4bedc0c4c45e2c6b742395622 148 PIRSF PIRSF019404 1 148 2.2E-50 T 15-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 NJ56_13035 5c6e8de4bedc0c4c45e2c6b742395622 148 PRINTS PR01004 Flagellar FliJ protein signature 108 126 7.2E-41 T 15-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 NJ56_13035 5c6e8de4bedc0c4c45e2c6b742395622 148 PRINTS PR01004 Flagellar FliJ protein signature 86 107 7.2E-41 T 15-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 NJ56_13035 5c6e8de4bedc0c4c45e2c6b742395622 148 PRINTS PR01004 Flagellar FliJ protein signature 27 43 7.2E-41 T 15-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 NJ56_13035 5c6e8de4bedc0c4c45e2c6b742395622 148 PRINTS PR01004 Flagellar FliJ protein signature 4 26 7.2E-41 T 15-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 NJ56_13035 5c6e8de4bedc0c4c45e2c6b742395622 148 PRINTS PR01004 Flagellar FliJ protein signature 126 146 7.2E-41 T 15-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 NJ56_13035 5c6e8de4bedc0c4c45e2c6b742395622 148 PRINTS PR01004 Flagellar FliJ protein signature 44 61 7.2E-41 T 15-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 NJ56_13035 5c6e8de4bedc0c4c45e2c6b742395622 148 PRINTS PR01004 Flagellar FliJ protein signature 63 84 7.2E-41 T 15-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 NJ56_13035 5c6e8de4bedc0c4c45e2c6b742395622 148 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 143 1.0E-31 T 15-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 NJ56_13035 5c6e8de4bedc0c4c45e2c6b742395622 148 Pfam PF02050 Flagellar FliJ protein 19 141 4.7E-34 T 15-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 NJ56_13855 ff5667fcdfb8676b0c9cc7e6dfc8cd98 69 PIRSF PIRSF002599 1 69 1.6E-25 T 15-10-2018 IPR012156 Cold shock, CspA GO:0003676 NJ56_13855 ff5667fcdfb8676b0c9cc7e6dfc8cd98 69 PRINTS PR00050 Cold shock protein signature 27 36 5.5E-19 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13855 ff5667fcdfb8676b0c9cc7e6dfc8cd98 69 PRINTS PR00050 Cold shock protein signature 42 60 5.5E-19 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13855 ff5667fcdfb8676b0c9cc7e6dfc8cd98 69 PRINTS PR00050 Cold shock protein signature 6 21 5.5E-19 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13855 ff5667fcdfb8676b0c9cc7e6dfc8cd98 69 SMART SM00357 5 69 1.6E-31 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_13855 ff5667fcdfb8676b0c9cc7e6dfc8cd98 69 Gene3D G3DSA:2.40.50.140 1 69 5.0E-32 T 15-10-2018 NJ56_13855 ff5667fcdfb8676b0c9cc7e6dfc8cd98 69 SUPERFAMILY SSF50249 3 68 4.46E-26 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_13855 ff5667fcdfb8676b0c9cc7e6dfc8cd98 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 3.3E-33 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13855 ff5667fcdfb8676b0c9cc7e6dfc8cd98 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 15-10-2018 IPR019844 Cold-shock conserved site NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 Gene3D G3DSA:1.10.10.10 341 523 4.9E-50 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 SMART SM00487 22 218 4.1E-30 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 14 603 9.6E-268 T 15-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 Pfam PF00271 Helicase conserved C-terminal domain 228 330 1.1E-19 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 SMART SM00956 411 514 4.2E-51 T 15-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 15 464 5.7E-200 T 15-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 Gene3D G3DSA:1.10.150.80 524 609 4.9E-30 T 15-10-2018 NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 SUPERFAMILY SSF47819 532 607 6.32E-26 T 15-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 Gene3D G3DSA:3.40.50.300 2 208 3.2E-87 T 15-10-2018 NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 SUPERFAMILY SSF52540 11 201 9.29E-47 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 Gene3D G3DSA:3.40.50.300 209 340 3.5E-44 T 15-10-2018 NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 Pfam PF00270 DEAD/DEAH box helicase 28 185 2.4E-20 T 15-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 Pfam PF00570 HRDC domain 535 601 7.2E-24 T 15-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 SMART SM00341 531 609 3.2E-25 T 15-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 Pfam PF16124 RecQ zinc-binding 343 404 1.4E-15 T 15-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 Pfam PF09382 RQC domain 406 516 7.1E-37 T 15-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 SUPERFAMILY SSF52540 208 456 2.6E-63 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05205 adfff767c2ada2e4b88fb1a6bb103b38 609 SMART SM00490 250 331 5.9E-28 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_10145 c2436701770e3401994e3944cfc64878 883 Gene3D G3DSA:2.60.40.3110 292 381 7.9E-33 T 15-10-2018 NJ56_10145 c2436701770e3401994e3944cfc64878 883 Gene3D G3DSA:3.10.20.410 30 181 1.2E-30 T 15-10-2018 NJ56_10145 c2436701770e3401994e3944cfc64878 883 Pfam PF13953 PapC C-terminal domain 804 865 2.1E-23 T 15-10-2018 IPR025949 PapC-like, C-terminal domain NJ56_10145 c2436701770e3401994e3944cfc64878 883 Pfam PF00577 Outer membrane usher protein 219 795 5.1E-197 T 15-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 NJ56_10145 c2436701770e3401994e3944cfc64878 883 Gene3D G3DSA:2.60.40.2070 801 883 1.7E-26 T 15-10-2018 NJ56_10145 c2436701770e3401994e3944cfc64878 883 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 334 344 - T 15-10-2018 IPR018030 Fimbrial membrane usher, conserved site NJ56_10145 c2436701770e3401994e3944cfc64878 883 Gene3D G3DSA:2.60.40.2610 710 800 6.3E-31 T 15-10-2018 NJ56_10145 c2436701770e3401994e3944cfc64878 883 Pfam PF13954 PapC N-terminal domain 33 204 3.6E-38 T 15-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 NJ56_10145 c2436701770e3401994e3944cfc64878 883 SUPERFAMILY SSF141729 98 196 7.46E-23 T 15-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 NJ56_02075 cea9ef3bad259968b974c1818648fa7a 356 Gene3D G3DSA:3.30.1300.30 44 340 3.8E-59 T 15-10-2018 NJ56_02075 cea9ef3bad259968b974c1818648fa7a 356 SUPERFAMILY SSF158544 101 246 1.83E-24 T 15-10-2018 IPR038072 GspK, central domain superfamily NJ56_02075 cea9ef3bad259968b974c1818648fa7a 356 Gene3D G3DSA:1.10.40.60 249 315 3.8E-59 T 15-10-2018 IPR038072 GspK, central domain superfamily NJ56_02075 cea9ef3bad259968b974c1818648fa7a 356 SUPERFAMILY SSF54523 37 353 2.2E-22 T 15-10-2018 NJ56_02075 cea9ef3bad259968b974c1818648fa7a 356 SUPERFAMILY SSF158544 248 307 6.54E-17 T 15-10-2018 IPR038072 GspK, central domain superfamily NJ56_02075 cea9ef3bad259968b974c1818648fa7a 356 PIRSF PIRSF002786 1 126 6.6E-23 T 15-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 NJ56_02075 cea9ef3bad259968b974c1818648fa7a 356 PIRSF PIRSF002786 144 356 3.2E-38 T 15-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 NJ56_02075 cea9ef3bad259968b974c1818648fa7a 356 Gene3D G3DSA:1.10.40.60 99 248 3.8E-59 T 15-10-2018 IPR038072 GspK, central domain superfamily NJ56_02075 cea9ef3bad259968b974c1818648fa7a 356 Pfam PF03934 Type II secretion system (T2SS), protein K 34 345 1.1E-73 T 15-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 1.1E-125 T 15-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 Gene3D G3DSA:3.50.50.60 118 244 3.5E-128 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 6.5E-51 T 15-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 5.3E-77 T 15-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 5.3E-77 T 15-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 5.3E-77 T 15-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 5.3E-77 T 15-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 5.3E-77 T 15-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 5.3E-77 T 15-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 5.3E-77 T 15-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 5.3E-77 T 15-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 5.3E-77 T 15-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 Gene3D G3DSA:3.50.50.60 9 311 3.5E-128 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 SUPERFAMILY SSF51905 2 314 1.66E-55 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 15-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 4.6E-41 T 15-10-2018 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 4.6E-41 T 15-10-2018 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 4.6E-41 T 15-10-2018 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 4.6E-41 T 15-10-2018 NJ56_16995 a0f2d5d0bcd88b01521ce981a3fdfa4c 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 4.6E-41 T 15-10-2018 NJ56_15820 b75e66ff92cd387edccc927e67e1646c 318 Gene3D G3DSA:3.40.50.1980 29 206 9.7E-56 T 15-10-2018 NJ56_15820 b75e66ff92cd387edccc927e67e1646c 318 SUPERFAMILY SSF53807 29 318 3.97E-77 T 15-10-2018 NJ56_15820 b75e66ff92cd387edccc927e67e1646c 318 Gene3D G3DSA:3.40.50.1980 207 318 2.6E-41 T 15-10-2018 NJ56_15820 b75e66ff92cd387edccc927e67e1646c 318 Pfam PF01297 Zinc-uptake complex component A periplasmic 30 314 6.0E-55 T 15-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 NJ56_02200 b5c89ec7ee1d11e75b6139401c19150e 368 Pfam PF07201 HrpJ-like domain 44 201 2.6E-32 T 15-10-2018 IPR010812 Hypersensitivity response secretion-like, HrpJ GO:0009405|GO:0019867|GO:0046903 NJ56_02200 b5c89ec7ee1d11e75b6139401c19150e 368 SUPERFAMILY SSF140591 57 249 1.41E-43 T 15-10-2018 NJ56_02200 b5c89ec7ee1d11e75b6139401c19150e 368 TIGRFAM TIGR02568 LcrE: type III secretion regulator YopN/LcrE/InvE/MxiC 25 252 1.6E-37 T 15-10-2018 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC GO:0009986|GO:0030254|GO:0050709 NJ56_02200 b5c89ec7ee1d11e75b6139401c19150e 368 Gene3D G3DSA:1.10.150.630 150 239 5.7E-20 T 15-10-2018 NJ56_15155 d2e36d7577c155d352f8c233e834bdcb 361 Pfam PF03116 NQR2, RnfD, RnfE family 16 358 1.7E-109 T 15-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 NJ56_15155 d2e36d7577c155d352f8c233e834bdcb 361 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 19 359 8.0E-141 T 15-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 NJ56_15155 d2e36d7577c155d352f8c233e834bdcb 361 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 14 360 28.34 T 15-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 NJ56_14975 e5a114975e212f92781e34a0419ca818 775 Pfam PF05099 Tellurite resistance protein TerB 523 633 6.8E-7 T 15-10-2018 IPR007791 Co-chaperone DjlA, N-terminal NJ56_14975 e5a114975e212f92781e34a0419ca818 775 SUPERFAMILY SSF158682 514 642 2.62E-20 T 15-10-2018 IPR029024 TerB-like NJ56_14975 e5a114975e212f92781e34a0419ca818 775 Gene3D G3DSA:1.10.3680.10 514 643 5.2E-9 T 15-10-2018 IPR029024 TerB-like NJ56_14975 e5a114975e212f92781e34a0419ca818 775 Pfam PF13208 TerB N-terminal domain 119 324 3.7E-50 T 15-10-2018 IPR025266 TerB, N-terminal NJ56_14975 e5a114975e212f92781e34a0419ca818 775 Pfam PF15615 TerB-C domain 646 773 1.5E-12 T 15-10-2018 IPR028932 TerB-C domain NJ56_05535 ef912baefe758423b2261a0da1ea5c4e 287 SUPERFAMILY SSF53681 29 129 7.85E-32 T 15-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 NJ56_05535 ef912baefe758423b2261a0da1ea5c4e 287 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 93 101 - T 15-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 NJ56_05535 ef912baefe758423b2261a0da1ea5c4e 287 Hamap MF_00258 Glutamate racemase [murI]. 26 278 33.997 T 15-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 NJ56_05535 ef912baefe758423b2261a0da1ea5c4e 287 Pfam PF01177 Asp/Glu/Hydantoin racemase 31 239 3.7E-25 T 15-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 NJ56_05535 ef912baefe758423b2261a0da1ea5c4e 287 Gene3D G3DSA:3.40.50.1860 30 265 4.4E-93 T 15-10-2018 NJ56_05535 ef912baefe758423b2261a0da1ea5c4e 287 Gene3D G3DSA:3.40.50.1860 118 231 4.4E-93 T 15-10-2018 NJ56_05535 ef912baefe758423b2261a0da1ea5c4e 287 TIGRFAM TIGR00067 glut_race: glutamate racemase 29 271 6.6E-86 T 15-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 NJ56_05535 ef912baefe758423b2261a0da1ea5c4e 287 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 204 214 - T 15-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 NJ56_05535 ef912baefe758423b2261a0da1ea5c4e 287 SUPERFAMILY SSF53681 131 280 1.29E-32 T 15-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 PRINTS PR01836 Magnesium-transporting ATPase signature 860 881 6.1E-84 T 15-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 PRINTS PR01836 Magnesium-transporting ATPase signature 308 327 6.1E-84 T 15-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 PRINTS PR01836 Magnesium-transporting ATPase signature 412 425 6.1E-84 T 15-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 PRINTS PR01836 Magnesium-transporting ATPase signature 775 791 6.1E-84 T 15-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 PRINTS PR01836 Magnesium-transporting ATPase signature 705 720 6.1E-84 T 15-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 PRINTS PR01836 Magnesium-transporting ATPase signature 291 307 6.1E-84 T 15-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 PRINTS PR01836 Magnesium-transporting ATPase signature 723 734 6.1E-84 T 15-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 PRINTS PR01836 Magnesium-transporting ATPase signature 810 831 6.1E-84 T 15-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 PRINTS PR01836 Magnesium-transporting ATPase signature 755 768 6.1E-84 T 15-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 Gene3D G3DSA:1.20.1110.10 687 815 1.2E-10 T 15-10-2018 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 Gene3D G3DSA:1.20.1110.10 274 390 7.9E-22 T 15-10-2018 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 Gene3D G3DSA:3.40.50.1000 556 686 5.6E-24 T 15-10-2018 IPR023214 HAD superfamily NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 SMART SM00831 51 124 1.3E-5 T 15-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 SUPERFAMILY SSF81665 55 904 2.09E-100 T 15-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 SUPERFAMILY SSF81653 176 277 3.14E-27 T 15-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 380 386 - T 15-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 Gene3D G3DSA:2.70.150.10 121 273 1.5E-41 T 15-10-2018 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 615 736 1.6E-29 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 266 396 6.7E-20 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 Gene3D G3DSA:3.40.1110.10 391 555 5.5E-59 T 15-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 Pfam PF00690 Cation transporter/ATPase, N-terminus 56 119 9.6E-14 T 15-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 SUPERFAMILY SSF56784 537 691 9.7E-39 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 SUPERFAMILY SSF81660 347 551 1.7E-40 T 15-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 Pfam PF00702 haloacid dehalogenase-like hydrolase 374 661 9.1E-22 T 15-10-2018 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 44 906 0.0 T 15-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NJ56_08105 dc591e5c1dd3c7478b207d9d5e48deee 906 Pfam PF00122 E1-E2 ATPase 161 358 1.2E-43 T 15-10-2018 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 Pfam PF00158 Sigma-54 interaction domain 141 307 8.6E-70 T 15-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 SUPERFAMILY SSF52172 6 186 3.13E-46 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 Pfam PF00072 Response regulator receiver domain 6 115 1.2E-30 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 15-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 15-10-2018 IPR025944 Sigma-54 interaction domain, conserved site NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 15-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 Pfam PF02954 Bacterial regulatory protein, Fis family 428 467 1.7E-15 T 15-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 Gene3D G3DSA:3.40.50.300 130 311 5.3E-66 T 15-10-2018 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 Gene3D G3DSA:3.40.50.2300 1 124 6.7E-45 T 15-10-2018 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 SUPERFAMILY SSF46689 381 470 2.01E-24 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 SMART SM00382 161 312 6.2E-12 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 SUPERFAMILY SSF52540 140 384 3.41E-73 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 SMART SM00448 4 115 4.4E-36 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 433 450 8.0E-11 T 15-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 450 470 8.0E-11 T 15-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 Gene3D G3DSA:1.10.8.60 312 378 3.5E-19 T 15-10-2018 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 Gene3D G3DSA:1.10.10.60 380 470 4.8E-29 T 15-10-2018 NJ56_06070 87bc1c0a9a669023c28a7d8623f8898e 470 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 467 7.6E-244 T 15-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 NJ56_00340 cd87a2dd14fe80777f3b3733c88d6dc7 405 Gene3D G3DSA:2.40.50.100 2 80 1.3E-22 T 15-10-2018 NJ56_00340 cd87a2dd14fe80777f3b3733c88d6dc7 405 SUPERFAMILY SSF52777 175 404 2.22E-89 T 15-10-2018 NJ56_00340 cd87a2dd14fe80777f3b3733c88d6dc7 405 Gene3D G3DSA:3.30.559.10 173 405 1.4E-97 T 15-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 NJ56_00340 cd87a2dd14fe80777f3b3733c88d6dc7 405 Gene3D G3DSA:4.10.320.10 103 152 1.7E-23 T 15-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 NJ56_00340 cd87a2dd14fe80777f3b3733c88d6dc7 405 SUPERFAMILY SSF51230 2 93 3.01E-24 T 15-10-2018 IPR011053 Single hybrid motif NJ56_00340 cd87a2dd14fe80777f3b3733c88d6dc7 405 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 15-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 NJ56_00340 cd87a2dd14fe80777f3b3733c88d6dc7 405 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 175 403 9.2E-82 T 15-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 NJ56_00340 cd87a2dd14fe80777f3b3733c88d6dc7 405 Pfam PF02817 e3 binding domain 114 146 4.8E-12 T 15-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 NJ56_00340 cd87a2dd14fe80777f3b3733c88d6dc7 405 Pfam PF00364 Biotin-requiring enzyme 5 77 3.7E-18 T 15-10-2018 IPR000089 Biotin/lipoyl attachment NJ56_00340 cd87a2dd14fe80777f3b3733c88d6dc7 405 SUPERFAMILY SSF47005 106 150 5.23E-11 T 15-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 NJ56_00340 cd87a2dd14fe80777f3b3733c88d6dc7 405 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 405 1.4E-189 T 15-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 NJ56_00655 02d22fa8b2a6f552085f81947b9c85e0 344 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 214 337 8.6E-65 T 15-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_00655 02d22fa8b2a6f552085f81947b9c85e0 344 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 18 332 3.5E-100 T 15-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 NJ56_00655 02d22fa8b2a6f552085f81947b9c85e0 344 SUPERFAMILY SSF52540 1 210 4.17E-52 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00655 02d22fa8b2a6f552085f81947b9c85e0 344 SUPERFAMILY SSF48019 212 333 2.55E-35 T 15-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 NJ56_00655 02d22fa8b2a6f552085f81947b9c85e0 344 Gene3D G3DSA:3.40.50.300 1 140 5.2E-47 T 15-10-2018 NJ56_00655 02d22fa8b2a6f552085f81947b9c85e0 344 Gene3D G3DSA:1.20.272.10 214 343 5.8E-48 T 15-10-2018 NJ56_00655 02d22fa8b2a6f552085f81947b9c85e0 344 Gene3D G3DSA:1.10.8.60 143 213 6.2E-25 T 15-10-2018 NJ56_00655 02d22fa8b2a6f552085f81947b9c85e0 344 Pfam PF06144 DNA polymerase III, delta subunit 21 190 3.5E-41 T 15-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 NJ56_14520 824a59e5101cbfbe3f7dbcc9702da34c 408 SUPERFAMILY SSF103473 7 390 3.92E-58 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_14520 824a59e5101cbfbe3f7dbcc9702da34c 408 Pfam PF07690 Major Facilitator Superfamily 14 343 1.2E-39 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_14520 824a59e5101cbfbe3f7dbcc9702da34c 408 Gene3D G3DSA:1.20.1720.10 7 381 9.0E-80 T 15-10-2018 NJ56_14520 824a59e5101cbfbe3f7dbcc9702da34c 408 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 4 381 9.4E-106 T 15-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 NJ56_07365 8c2f7ed2aa2ebd30188aaef9d81bfe00 209 Gene3D G3DSA:2.40.30.10 128 209 4.6E-18 T 15-10-2018 NJ56_07365 8c2f7ed2aa2ebd30188aaef9d81bfe00 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 2.5E-92 T 15-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07365 8c2f7ed2aa2ebd30188aaef9d81bfe00 209 Pfam PF00297 Ribosomal protein L3 42 182 1.3E-12 T 15-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07365 8c2f7ed2aa2ebd30188aaef9d81bfe00 209 Gene3D G3DSA:2.40.50.620 32 94 3.3E-15 T 15-10-2018 NJ56_07365 8c2f7ed2aa2ebd30188aaef9d81bfe00 209 SUPERFAMILY SSF50447 1 208 1.06E-79 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_07365 8c2f7ed2aa2ebd30188aaef9d81bfe00 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 41.012 T 15-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07365 8c2f7ed2aa2ebd30188aaef9d81bfe00 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 15-10-2018 IPR019926 Ribosomal protein L3, conserved site NJ56_13520 fd5edbe73359aa1505e8a8b7e7343396 122 Pfam PF13560 Helix-turn-helix domain 12 66 3.6E-10 T 15-10-2018 NJ56_13520 fd5edbe73359aa1505e8a8b7e7343396 122 SMART SM00530 15 70 6.4E-7 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_13520 fd5edbe73359aa1505e8a8b7e7343396 122 SUPERFAMILY SSF47413 9 76 2.95E-14 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_13520 fd5edbe73359aa1505e8a8b7e7343396 122 Gene3D G3DSA:1.10.260.40 11 94 2.8E-13 T 15-10-2018 NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 SUPERFAMILY SSF55785 123 233 9.34E-13 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 SMART SM00091 110 176 0.0059 T 15-10-2018 IPR000014 PAS domain NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 114 232 2.2E-12 T 15-10-2018 IPR000014 PAS domain NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 SMART SM00052 404 649 7.9E-112 T 15-10-2018 IPR001633 EAL domain NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 233 392 2.0E-38 T 15-10-2018 IPR000160 GGDEF domain NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 SUPERFAMILY SSF141868 411 657 5.49E-84 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 Gene3D G3DSA:3.30.70.270 234 407 6.5E-58 T 15-10-2018 NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 SMART SM00267 225 394 1.9E-61 T 15-10-2018 IPR000160 GGDEF domain NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 Gene3D G3DSA:3.20.20.450 408 662 7.4E-91 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 Pfam PF00563 EAL domain 411 644 1.1E-67 T 15-10-2018 IPR001633 EAL domain NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 Pfam PF13426 PAS domain 122 224 1.2E-8 T 15-10-2018 IPR000014 PAS domain NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 Gene3D G3DSA:3.30.450.20 116 233 4.3E-13 T 15-10-2018 NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 Pfam PF00990 Diguanylate cyclase, GGDEF domain 236 388 1.9E-45 T 15-10-2018 IPR000160 GGDEF domain NJ56_05955 1c3bf91cc5c29c803e37cb7f28fedb70 669 SUPERFAMILY SSF55073 242 396 1.8E-45 T 15-10-2018 IPR029787 Nucleotide cyclase NJ56_01415 a9551cda6f7f2b3fa431cffa4441c074 316 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 13 240 2.3E-113 T 15-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 NJ56_01415 a9551cda6f7f2b3fa431cffa4441c074 316 Gene3D G3DSA:1.10.287.90 28 112 2.3E-32 T 15-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01415 a9551cda6f7f2b3fa431cffa4441c074 316 Gene3D G3DSA:2.60.40.420 113 283 9.3E-60 T 15-10-2018 IPR008972 Cupredoxin NJ56_01415 a9551cda6f7f2b3fa431cffa4441c074 316 SUPERFAMILY SSF81464 27 116 6.21E-23 T 15-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01415 a9551cda6f7f2b3fa431cffa4441c074 316 SUPERFAMILY SSF49503 125 282 6.39E-53 T 15-10-2018 IPR008972 Cupredoxin NJ56_01415 a9551cda6f7f2b3fa431cffa4441c074 316 Pfam PF06481 COX Aromatic Rich Motif 240 286 7.9E-21 T 15-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 NJ56_01415 a9551cda6f7f2b3fa431cffa4441c074 316 PIRSF PIRSF000292 1 313 3.9E-132 T 15-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 NJ56_01415 a9551cda6f7f2b3fa431cffa4441c074 316 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 149 220 9.4E-6 T 15-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_04940 9e3fba5743c251c306535232777274e0 251 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 16 250 39.256 T 15-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 NJ56_04940 9e3fba5743c251c306535232777274e0 251 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 36 51 - T 15-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 NJ56_04940 9e3fba5743c251c306535232777274e0 251 Gene3D G3DSA:3.40.50.150 31 251 7.5E-75 T 15-10-2018 NJ56_04940 9e3fba5743c251c306535232777274e0 251 SUPERFAMILY SSF53335 19 248 1.05E-52 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_04940 9e3fba5743c251c306535232777274e0 251 Pfam PF01209 ubiE/COQ5 methyltransferase family 18 250 7.1E-105 T 15-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 NJ56_04940 9e3fba5743c251c306535232777274e0 251 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 158 172 - T 15-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 NJ56_04940 9e3fba5743c251c306535232777274e0 251 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 25 250 2.1E-86 T 15-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 NJ56_08345 dce7574277610d538c46c0a488b71f01 234 PIRSF PIRSF006232 1 231 1.5E-28 T 15-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 NJ56_08345 dce7574277610d538c46c0a488b71f01 234 Pfam PF02678 Pirin 5 119 2.7E-19 T 15-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 NJ56_08345 dce7574277610d538c46c0a488b71f01 234 Gene3D G3DSA:2.60.120.10 134 234 1.0E-34 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_08345 dce7574277610d538c46c0a488b71f01 234 SUPERFAMILY SSF51182 1 232 1.08E-43 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_08345 dce7574277610d538c46c0a488b71f01 234 Gene3D G3DSA:2.60.120.10 12 133 4.5E-34 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_05060 ad1e25ea0b3541fd46ff7e61bb2ff71a 428 Pfam PF11862 Domain of unknown function (DUF3382) 6 103 1.6E-25 T 15-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal NJ56_05060 ad1e25ea0b3541fd46ff7e61bb2ff71a 428 Pfam PF02653 Branched-chain amino acid transport system / permease component 112 398 3.5E-57 T 15-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 NJ56_11270 967891f5971b1733dee36fc950edec0b 415 SUPERFAMILY SSF103473 6 396 1.7E-48 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_11270 967891f5971b1733dee36fc950edec0b 415 Pfam PF07690 Major Facilitator Superfamily 219 402 1.6E-19 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_11270 967891f5971b1733dee36fc950edec0b 415 Gene3D G3DSA:1.20.1250.20 1 184 2.5E-20 T 15-10-2018 NJ56_11270 967891f5971b1733dee36fc950edec0b 415 Gene3D G3DSA:1.20.1250.20 214 411 5.4E-24 T 15-10-2018 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 Pfam PF00512 His Kinase A (phospho-acceptor) domain 292 355 8.9E-20 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 SMART SM00073 818 914 2.2E-8 T 15-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 176 6.1E-57 T 15-10-2018 IPR019247 Histidine kinase BarA, N-terminal NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 403 517 2.1E-28 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 SMART SM00304 199 251 5.5E-7 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 SUPERFAMILY SSF52172 529 646 1.09E-6 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 SMART SM00387 403 521 6.5E-35 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 SUPERFAMILY SSF52172 667 794 4.13E-33 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 Gene3D G3DSA:3.30.565.10 357 522 1.1E-49 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 SUPERFAMILY SSF47384 277 357 1.96E-21 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 Pfam PF01627 Hpt domain 828 910 1.4E-10 T 15-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 Gene3D G3DSA:1.20.1480.50 165 254 2.6E-8 T 15-10-2018 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 497 3.8E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 458 3.8E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 472 3.8E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 516 3.8E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 SUPERFAMILY SSF47226 764 909 1.44E-17 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 Pfam PF00072 Response regulator receiver domain 670 781 5.6E-26 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 SMART SM00388 291 356 6.7E-24 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 SUPERFAMILY SSF158472 199 248 2.09E-5 T 15-10-2018 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 SMART SM00448 668 781 1.2E-27 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 Gene3D G3DSA:3.40.50.2300 660 797 7.0E-34 T 15-10-2018 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 Gene3D G3DSA:1.10.287.130 255 354 1.9E-28 T 15-10-2018 NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 SUPERFAMILY SSF55874 345 515 2.23E-43 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_02415 a18fbc4cb984066666097b18a154dd29 931 Gene3D G3DSA:1.20.120.160 807 917 2.6E-26 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 SUPERFAMILY SSF82282 7 399 5.62E-116 T 15-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 SUPERFAMILY SSF56507 902 1225 1.83E-134 T 15-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 SUPERFAMILY SSF51717 356 630 5.63E-88 T 15-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 Gene3D G3DSA:3.40.50.280 743 894 3.8E-56 T 15-10-2018 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 PIRSF PIRSF000381 1 1194 0.0 T 15-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 937 1207 3.7E-125 T 15-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 Pfam PF02574 Homocysteine S-methyltransferase 17 325 4.3E-79 T 15-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 SUPERFAMILY SSF47644 652 738 2.09E-28 T 15-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 Pfam PF02310 B12 binding domain 747 839 1.2E-18 T 15-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 Gene3D G3DSA:3.10.196.10 907 1222 1.0E-149 T 15-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 SMART SM01018 656 739 5.1E-44 T 15-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 Gene3D G3DSA:1.10.288.10 935 1091 1.0E-149 T 15-10-2018 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 Pfam PF02607 B12 binding domain 658 732 6.1E-24 T 15-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 Gene3D G3DSA:3.20.20.330 2 338 4.0E-124 T 15-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 SUPERFAMILY SSF52242 743 893 1.83E-46 T 15-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 Gene3D G3DSA:1.10.1240.10 649 736 6.5E-40 T 15-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 Gene3D G3DSA:3.20.20.20 340 642 2.4E-129 T 15-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 Pfam PF00809 Pterin binding enzyme 360 598 1.9E-62 T 15-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_07625 0deb657d58b023ed62a9f8b2e076ea4f 1226 TIGRFAM TIGR02082 metH: methionine synthase 13 1191 0.0 T 15-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_13950 21ad23ad0b2a722668753d2d6b20e99a 322 Gene3D G3DSA:3.40.35.10 159 322 3.8E-62 T 15-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 NJ56_13950 21ad23ad0b2a722668753d2d6b20e99a 322 SUPERFAMILY SSF53062 3 128 3.01E-36 T 15-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 NJ56_13950 21ad23ad0b2a722668753d2d6b20e99a 322 Pfam PF03830 PTS system sorbose subfamily IIB component 164 310 2.0E-57 T 15-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 NJ56_13950 21ad23ad0b2a722668753d2d6b20e99a 322 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 3 115 2.8E-44 T 15-10-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 NJ56_13950 21ad23ad0b2a722668753d2d6b20e99a 322 Pfam PF03610 PTS system fructose IIA component 5 115 2.2E-32 T 15-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 NJ56_13950 21ad23ad0b2a722668753d2d6b20e99a 322 Gene3D G3DSA:3.40.50.510 2 135 6.1E-41 T 15-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 NJ56_13950 21ad23ad0b2a722668753d2d6b20e99a 322 SUPERFAMILY SSF52728 162 321 9.02E-57 T 15-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 NJ56_13950 21ad23ad0b2a722668753d2d6b20e99a 322 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 164 310 2.5E-58 T 15-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 PIRSF PIRSF000144 536 693 0.24 T 15-10-2018 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 PIRSF PIRSF000144 53 448 5.9E-60 T 15-10-2018 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 6 686 7.5E-274 T 15-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 435 452 - T 15-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 Gene3D G3DSA:3.40.228.10 142 340 9.2E-175 T 15-10-2018 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 Pfam PF00384 Molybdopterin oxidoreductase 61 488 1.5E-90 T 15-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 Pfam PF01568 Molydopterin dinucleotide binding domain 576 683 3.9E-27 T 15-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 SMART SM00926 1 54 9.7E-17 T 15-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 1 53 4.4E-14 T 15-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 Gene3D G3DSA:2.20.25.90 1 55 8.6E-19 T 15-10-2018 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 Gene3D G3DSA:2.40.40.20 573 689 9.7E-42 T 15-10-2018 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 SUPERFAMILY SSF53706 1 564 1.57E-195 T 15-10-2018 NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 SUPERFAMILY SSF50692 566 698 1.92E-41 T 15-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily NJ56_16155 1399f3e37825aa813787e1f0f6920fac 723 Gene3D G3DSA:3.40.50.740 66 532 9.2E-175 T 15-10-2018 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 SUPERFAMILY SSF58104 232 518 9.29E-75 T 15-10-2018 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 Gene3D G3DSA:1.10.287.950 212 514 1.1E-91 T 15-10-2018 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 Pfam PF02203 Tar ligand binding domain homologue 1 168 2.9E-51 T 15-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 480 2.6E-55 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 SMART SM00319 44 178 3.6E-34 T 15-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 SUPERFAMILY SSF47170 38 175 1.57E-41 T 15-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 290 312 - T 15-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 Pfam PF00672 HAMP domain 215 259 3.7E-8 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 Gene3D G3DSA:1.20.120.30 22 189 1.1E-44 T 15-10-2018 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 SMART SM00283 265 512 2.8E-97 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 8.3E-81 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 8.3E-81 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 189 209 8.3E-81 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 8.3E-81 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 8.3E-81 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 8.3E-81 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 8.3E-81 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12810 d88ff6b26220cded158ec6be373d2b71 537 SMART SM00304 212 264 1.7E-9 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_03350 66a1ff252281f5c27a778426b5cf5c42 258 Pfam PF08220 DeoR-like helix-turn-helix domain 7 58 1.1E-15 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_03350 66a1ff252281f5c27a778426b5cf5c42 258 SMART SM00420 7 59 2.3E-15 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_03350 66a1ff252281f5c27a778426b5cf5c42 258 SUPERFAMILY SSF46785 6 59 1.55E-14 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_03350 66a1ff252281f5c27a778426b5cf5c42 258 SMART SM01134 74 235 3.7E-67 T 15-10-2018 NJ56_03350 66a1ff252281f5c27a778426b5cf5c42 258 Pfam PF00455 DeoR C terminal sensor domain 77 234 9.4E-52 T 15-10-2018 IPR014036 DeoR C-terminal sensor domain NJ56_03350 66a1ff252281f5c27a778426b5cf5c42 258 Gene3D G3DSA:1.10.10.10 2 58 1.2E-7 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_03350 66a1ff252281f5c27a778426b5cf5c42 258 SUPERFAMILY SSF100950 76 237 2.26E-31 T 15-10-2018 IPR037171 NagB/RpiA transferase-like NJ56_03350 66a1ff252281f5c27a778426b5cf5c42 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 25 39 2.2E-5 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_03350 66a1ff252281f5c27a778426b5cf5c42 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 39 57 2.2E-5 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_14610 9d98497002e38411fd850b83d116f5ce 217 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 3 217 6.4E-94 T 15-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 NJ56_14610 9d98497002e38411fd850b83d116f5ce 217 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 15 217 38.437 T 15-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 NJ56_14610 9d98497002e38411fd850b83d116f5ce 217 Gene3D G3DSA:2.30.110.10 19 217 5.3E-76 T 15-10-2018 IPR012349 FMN-binding split barrel GO:0048037 NJ56_14610 9d98497002e38411fd850b83d116f5ce 217 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 187 200 - T 15-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 NJ56_14610 9d98497002e38411fd850b83d116f5ce 217 SUPERFAMILY SSF50475 20 217 4.68E-66 T 15-10-2018 NJ56_14610 9d98497002e38411fd850b83d116f5ce 217 PIRSF PIRSF000190 1 217 5.1E-81 T 15-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 NJ56_14610 9d98497002e38411fd850b83d116f5ce 217 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 177 217 3.1E-18 T 15-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 NJ56_14610 9d98497002e38411fd850b83d116f5ce 217 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 38 121 3.4E-24 T 15-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 NJ56_15275 f750f2f07e075a0e7aace9bf06bb9e82 253 Pfam PF00106 short chain dehydrogenase 14 209 9.8E-49 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15275 f750f2f07e075a0e7aace9bf06bb9e82 253 SUPERFAMILY SSF51735 10 243 5.94E-61 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_15275 f750f2f07e075a0e7aace9bf06bb9e82 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 199 4.0E-4 T 15-10-2018 NJ56_15275 f750f2f07e075a0e7aace9bf06bb9e82 253 Gene3D G3DSA:3.40.50.720 1 252 2.5E-72 T 15-10-2018 NJ56_15275 f750f2f07e075a0e7aace9bf06bb9e82 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 15-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NJ56_15275 f750f2f07e075a0e7aace9bf06bb9e82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 3.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15275 f750f2f07e075a0e7aace9bf06bb9e82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 3.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15275 f750f2f07e075a0e7aace9bf06bb9e82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 3.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15275 f750f2f07e075a0e7aace9bf06bb9e82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 3.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15275 f750f2f07e075a0e7aace9bf06bb9e82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 3.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15275 f750f2f07e075a0e7aace9bf06bb9e82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 3.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 Pfam PF01751 Toprim domain 3 130 1.1E-16 T 15-10-2018 IPR006171 TOPRIM domain NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 Gene3D G3DSA:1.10.290.10 281 410 2.8E-154 T 15-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 SUPERFAMILY SSF57783 614 649 2.55E-7 T 15-10-2018 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 657 4.5E-246 T 15-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 Gene3D G3DSA:1.10.460.10 158 600 2.8E-154 T 15-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 Pfam PF01131 DNA topoisomerase 154 590 6.3E-113 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 SMART SM00436 123 218 7.5E-30 T 15-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 Gene3D G3DSA:2.70.20.10 212 486 2.8E-154 T 15-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 619 652 1.8E-7 T 15-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 SMART SM00493 1 123 2.9E-18 T 15-10-2018 IPR006171 TOPRIM domain NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 Gene3D G3DSA:3.40.50.140 1 150 3.6E-49 T 15-10-2018 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 SUPERFAMILY SSF56712 1 603 2.35E-178 T 15-10-2018 IPR023405 DNA topoisomerase, type IA, core domain NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 SMART SM00437 272 556 1.9E-64 T 15-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 396 412 4.2E-27 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 188 206 4.2E-27 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 97 110 4.2E-27 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 315 324 4.2E-27 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 519 533 4.2E-27 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_04580 0286998b442548ff1bcb52076c4739d9 666 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 309 324 - T 15-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 NJ56_15205 a2a2e6fe726ac104d6508eea55a004ca 86 Gene3D G3DSA:3.30.1660.10 19 86 3.7E-18 T 15-10-2018 IPR025543 Dodecin-like NJ56_15205 a2a2e6fe726ac104d6508eea55a004ca 86 SUPERFAMILY SSF159871 3 86 3.4E-23 T 15-10-2018 IPR036275 YdgH-like superfamily NJ56_15205 a2a2e6fe726ac104d6508eea55a004ca 86 Pfam PF07338 Protein of unknown function (DUF1471) 34 85 4.6E-19 T 15-10-2018 IPR010854 Domain of unknown function DUF1471 NJ56_11760 a01ced6cb06f2721afcb06626da42173 285 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 123 143 - T 15-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 NJ56_11760 a01ced6cb06f2721afcb06626da42173 285 Pfam PF00378 Enoyl-CoA hydratase/isomerase 31 279 1.5E-80 T 15-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 NJ56_11760 a01ced6cb06f2721afcb06626da42173 285 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 15 284 55.852 T 15-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 NJ56_11760 a01ced6cb06f2721afcb06626da42173 285 Gene3D G3DSA:1.10.12.10 223 273 3.5E-31 T 15-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal NJ56_11760 a01ced6cb06f2721afcb06626da42173 285 TIGRFAM TIGR01929 menB: naphthoate synthase 22 281 3.0E-150 T 15-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 NJ56_11760 a01ced6cb06f2721afcb06626da42173 285 SUPERFAMILY SSF52096 18 280 1.42E-79 T 15-10-2018 IPR029045 ClpP/crotonase-like domain superfamily NJ56_11760 a01ced6cb06f2721afcb06626da42173 285 Gene3D G3DSA:3.90.226.10 1 222 9.2E-88 T 15-10-2018 NJ56_16670 f8ffbaf709e60dd59dae194ac051e6ba 251 SMART SM00947 91 251 2.2E-41 T 15-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NJ56_16670 f8ffbaf709e60dd59dae194ac051e6ba 251 SUPERFAMILY SSF53056 40 250 9.42E-53 T 15-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 NJ56_16670 f8ffbaf709e60dd59dae194ac051e6ba 251 Pfam PF00484 Carbonic anhydrase 98 245 3.7E-33 T 15-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NJ56_16670 f8ffbaf709e60dd59dae194ac051e6ba 251 Gene3D G3DSA:3.40.1050.10 47 251 2.3E-53 T 15-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 NJ56_03025 a293d162f08d11927ac36b7a66ae2d4a 317 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 15-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 NJ56_03025 a293d162f08d11927ac36b7a66ae2d4a 317 TIGRFAM TIGR00874 talAB: transaldolase 4 316 1.2E-161 T 15-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 NJ56_03025 a293d162f08d11927ac36b7a66ae2d4a 317 Hamap MF_00492 Transaldolase [tal]. 2 317 51.427 T 15-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 NJ56_03025 a293d162f08d11927ac36b7a66ae2d4a 317 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 313 4.4E-101 T 15-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 NJ56_03025 a293d162f08d11927ac36b7a66ae2d4a 317 SUPERFAMILY SSF51569 1 316 1.36E-114 T 15-10-2018 NJ56_03025 a293d162f08d11927ac36b7a66ae2d4a 317 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 15-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 NJ56_03025 a293d162f08d11927ac36b7a66ae2d4a 317 Gene3D G3DSA:3.20.20.70 2 317 1.4E-147 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_03145 7dadc11fd82a1753923240806f674b51 259 PIRSF PIRSF001357 5 255 3.1E-78 T 15-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 NJ56_03145 7dadc11fd82a1753923240806f674b51 259 Pfam PF01791 DeoC/LacD family aldolase 12 243 1.8E-44 T 15-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 NJ56_03145 7dadc11fd82a1753923240806f674b51 259 Gene3D G3DSA:3.20.20.70 1 259 4.8E-103 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_03145 7dadc11fd82a1753923240806f674b51 259 SUPERFAMILY SSF51569 5 246 7.33E-81 T 15-10-2018 NJ56_03145 7dadc11fd82a1753923240806f674b51 259 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 1 259 52.673 T 15-10-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 NJ56_03145 7dadc11fd82a1753923240806f674b51 259 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 11 232 3.8E-78 T 15-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 NJ56_03145 7dadc11fd82a1753923240806f674b51 259 SMART SM01133 10 246 3.0E-77 T 15-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 15-10-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site MetaCyc: PWY-7942 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 Gene3D G3DSA:3.40.630.20 1 214 1.3E-82 T 15-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 200 41.749 T 15-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 4 213 5.8E-91 T 15-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 PIRSF PIRSF015592 1 212 1.8E-88 T 15-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 Pfam PF01470 Pyroglutamyl peptidase 3 201 4.9E-82 T 15-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 SUPERFAMILY SSF53182 1 214 3.92E-74 T 15-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 2.5E-48 T 15-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 161 173 2.5E-48 T 15-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 2.5E-48 T 15-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 2.5E-48 T 15-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 NJ56_00380 87fd480237d507c0bf21ddb067413a25 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 2.5E-48 T 15-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 NJ56_07030 c4549875f12caadbd6b16a743806d61f 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 2.2E-22 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_07030 c4549875f12caadbd6b16a743806d61f 239 SUPERFAMILY SSF52172 3 126 1.17E-41 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_07030 c4549875f12caadbd6b16a743806d61f 239 SUPERFAMILY SSF46894 132 234 2.3E-26 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_07030 c4549875f12caadbd6b16a743806d61f 239 SMART SM00862 156 232 1.7E-23 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_07030 c4549875f12caadbd6b16a743806d61f 239 Gene3D G3DSA:3.40.50.2300 1 126 3.2E-40 T 15-10-2018 NJ56_07030 c4549875f12caadbd6b16a743806d61f 239 SMART SM00448 5 116 1.2E-44 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_07030 c4549875f12caadbd6b16a743806d61f 239 Gene3D G3DSA:1.10.10.10 130 239 1.5E-39 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_07030 c4549875f12caadbd6b16a743806d61f 239 Pfam PF00072 Response regulator receiver domain 7 117 1.3E-29 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_09565 4570e8751db2071214da93cc3bfce1ca 441 Pfam PF00583 Acetyltransferase (GNAT) family 335 412 2.6E-7 T 15-10-2018 IPR000182 GNAT domain NJ56_09565 4570e8751db2071214da93cc3bfce1ca 441 SUPERFAMILY SSF53633 4 290 4.89E-70 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_09565 4570e8751db2071214da93cc3bfce1ca 441 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 441 239.321 T 15-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 NJ56_09565 4570e8751db2071214da93cc3bfce1ca 441 PIRSF PIRSF000423 1 441 3.5E-211 T 15-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 NJ56_09565 4570e8751db2071214da93cc3bfce1ca 441 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 8 440 1.4E-200 T 15-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 NJ56_09565 4570e8751db2071214da93cc3bfce1ca 441 Gene3D G3DSA:3.40.1160.10 7 292 5.4E-86 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_09565 4570e8751db2071214da93cc3bfce1ca 441 SUPERFAMILY SSF55729 227 417 2.96E-19 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_09565 4570e8751db2071214da93cc3bfce1ca 441 Pfam PF00696 Amino acid kinase family 25 266 6.8E-31 T 15-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 NJ56_09565 4570e8751db2071214da93cc3bfce1ca 441 Gene3D G3DSA:3.40.630.30 293 441 1.1E-38 T 15-10-2018 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 Gene3D G3DSA:1.20.1740.10 2 402 6.3E-6 T 15-10-2018 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 Pfam PF03222 Tryptophan/tyrosine permease family 3 390 1.7E-137 T 15-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 PRINTS PR00166 Aromatic amino acid permease signature 337 356 4.9E-90 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 PRINTS PR00166 Aromatic amino acid permease signature 148 168 4.9E-90 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 PRINTS PR00166 Aromatic amino acid permease signature 316 334 4.9E-90 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 PRINTS PR00166 Aromatic amino acid permease signature 182 204 4.9E-90 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 PRINTS PR00166 Aromatic amino acid permease signature 282 301 4.9E-90 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 PRINTS PR00166 Aromatic amino acid permease signature 37 56 4.9E-90 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 PRINTS PR00166 Aromatic amino acid permease signature 10 33 4.9E-90 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 PRINTS PR00166 Aromatic amino acid permease signature 221 240 4.9E-90 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 PRINTS PR00166 Aromatic amino acid permease signature 82 102 4.9E-90 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 7 384 7.6E-140 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_11785 be3d320e16bd471661db14256eb8d328 403 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 17 33 - T 15-10-2018 IPR013061 Tryptophan/tryrosine permease, conserved site NJ56_08380 9276dc2e61abc4aff797b6dad460f50a 128 Pfam PF13721 SecD export protein N-terminal TM region 9 105 2.0E-20 T 15-10-2018 IPR027398 SecD export protein N-terminal TM domain NJ56_08380 9276dc2e61abc4aff797b6dad460f50a 128 Gene3D G3DSA:3.30.70.260 33 112 3.4E-33 T 15-10-2018 NJ56_08380 9276dc2e61abc4aff797b6dad460f50a 128 Hamap MF_00904 Modulator protein MzrA [mzrA]. 6 118 26.072 T 15-10-2018 IPR026574 Modulator protein MzrA NJ56_18060 7899c5861c43d5c9a135a5f621267ace 419 SUPERFAMILY SSF100879 247 343 9.03E-8 T 15-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 NJ56_18060 7899c5861c43d5c9a135a5f621267ace 419 Gene3D G3DSA:2.30.40.20 10 73 4.0E-40 T 15-10-2018 NJ56_18060 7899c5861c43d5c9a135a5f621267ace 419 SUPERFAMILY SSF56672 1 235 1.42E-62 T 15-10-2018 NJ56_18060 7899c5861c43d5c9a135a5f621267ace 419 Gene3D G3DSA:1.10.150.20 171 228 3.8E-10 T 15-10-2018 NJ56_18060 7899c5861c43d5c9a135a5f621267ace 419 Pfam PF00817 impB/mucB/samB family 6 150 1.1E-32 T 15-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 NJ56_18060 7899c5861c43d5c9a135a5f621267ace 419 Gene3D G3DSA:3.30.70.270 4 154 4.0E-40 T 15-10-2018 NJ56_18060 7899c5861c43d5c9a135a5f621267ace 419 Pfam PF11799 impB/mucB/samB family C-terminal domain 241 354 3.8E-19 T 15-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 NJ56_18060 7899c5861c43d5c9a135a5f621267ace 419 Gene3D G3DSA:3.30.1490.100 243 353 5.2E-8 T 15-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 NJ56_18060 7899c5861c43d5c9a135a5f621267ace 419 Pfam PF13438 Domain of unknown function (DUF4113) 368 417 2.4E-20 T 15-10-2018 IPR025188 Domain of unknown function DUF4113 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 Gene3D G3DSA:3.50.50.60 9 416 9.4E-172 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 SUPERFAMILY SSF56425 236 356 4.78E-42 T 15-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 5.0E-35 T 15-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 SUPERFAMILY SSF51905 4 442 2.44E-77 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 Gene3D G3DSA:4.10.80.40 548 588 9.3E-25 T 15-10-2018 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 Gene3D G3DSA:1.20.58.100 431 547 3.8E-39 T 15-10-2018 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 Gene3D G3DSA:3.90.700.10 246 350 9.4E-172 T 15-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 4.2E-276 T 15-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 4.7E-242 T 15-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 7.0E-5 T 15-10-2018 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 368 390 7.0E-5 T 15-10-2018 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 SUPERFAMILY SSF46977 452 588 2.62E-45 T 15-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 15-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 PIRSF PIRSF000171 1 580 7.3E-46 T 15-10-2018 NJ56_00355 fc9755e3b01a80f2b4ab15178d8df6bf 588 Pfam PF00890 FAD binding domain 9 405 5.8E-118 T 15-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 15-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 SUPERFAMILY SSF46609 1 83 9.69E-36 T 15-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 7.4E-39 T 15-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.9E-22 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 4.9E-22 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 4.9E-22 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.9E-22 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 4.9E-22 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 1.3E-34 T 15-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 Gene3D G3DSA:2.40.500.20 84 192 5.8E-42 T 15-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 Gene3D G3DSA:1.10.287.990 20 82 1.0E-25 T 15-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 PIRSF PIRSF000349 1 192 7.9E-85 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_14540 d06c01a99c8396a577130aa5b035926f 192 SUPERFAMILY SSF54719 82 191 4.84E-42 T 15-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_02065 37096ebf1c3abfada3c35b782a8e47c9 120 Gene3D G3DSA:3.30.1300.30 29 120 7.9E-31 T 15-10-2018 NJ56_02065 37096ebf1c3abfada3c35b782a8e47c9 120 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 4 24 - T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_02065 37096ebf1c3abfada3c35b782a8e47c9 120 Pfam PF02501 Type II secretion system (T2SS), protein I 39 116 3.8E-25 T 15-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 NJ56_02065 37096ebf1c3abfada3c35b782a8e47c9 120 SUPERFAMILY SSF54523 37 118 2.98E-26 T 15-10-2018 NJ56_02065 37096ebf1c3abfada3c35b782a8e47c9 120 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 3 25 2.2E-6 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_02065 37096ebf1c3abfada3c35b782a8e47c9 120 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 25 1.3E-6 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_02065 37096ebf1c3abfada3c35b782a8e47c9 120 TIGRFAM TIGR01707 gspI: type II secretion system protein I 5 102 1.8E-25 T 15-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 NJ56_08530 22e5c445e7994fd413441875a475768c 996 Gene3D G3DSA:3.40.1360.10 266 379 9.4E-19 T 15-10-2018 NJ56_08530 22e5c445e7994fd413441875a475768c 996 SMART SM00400 36 90 1.3E-19 T 15-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 NJ56_08530 22e5c445e7994fd413441875a475768c 996 Pfam PF13155 Toprim-like 278 364 4.7E-13 T 15-10-2018 NJ56_08530 22e5c445e7994fd413441875a475768c 996 Gene3D G3DSA:3.90.580.10 2 99 1.7E-28 T 15-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 NJ56_08530 22e5c445e7994fd413441875a475768c 996 SUPERFAMILY SSF56731 128 371 4.19E-26 T 15-10-2018 NJ56_08530 22e5c445e7994fd413441875a475768c 996 Gene3D G3DSA:3.90.980.10 122 257 1.7E-8 T 15-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily NJ56_08530 22e5c445e7994fd413441875a475768c 996 Pfam PF01807 CHC2 zinc finger 5 92 9.5E-25 T 15-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 NJ56_08530 22e5c445e7994fd413441875a475768c 996 SUPERFAMILY SSF57783 1 94 5.27E-27 T 15-10-2018 NJ56_08485 22e5c445e7994fd413441875a475768c 996 Gene3D G3DSA:3.40.1360.10 266 379 9.4E-19 T 15-10-2018 NJ56_08485 22e5c445e7994fd413441875a475768c 996 SMART SM00400 36 90 1.3E-19 T 15-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 NJ56_08485 22e5c445e7994fd413441875a475768c 996 Pfam PF13155 Toprim-like 278 364 4.7E-13 T 15-10-2018 NJ56_08485 22e5c445e7994fd413441875a475768c 996 Gene3D G3DSA:3.90.580.10 2 99 1.7E-28 T 15-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 NJ56_08485 22e5c445e7994fd413441875a475768c 996 SUPERFAMILY SSF56731 128 371 4.19E-26 T 15-10-2018 NJ56_08485 22e5c445e7994fd413441875a475768c 996 Gene3D G3DSA:3.90.980.10 122 257 1.7E-8 T 15-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily NJ56_08485 22e5c445e7994fd413441875a475768c 996 Pfam PF01807 CHC2 zinc finger 5 92 9.5E-25 T 15-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 NJ56_08485 22e5c445e7994fd413441875a475768c 996 SUPERFAMILY SSF57783 1 94 5.27E-27 T 15-10-2018 NJ56_17265 b6c1f7768004df5e94e643510387b0f1 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 43.484 T 15-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 NJ56_17265 b6c1f7768004df5e94e643510387b0f1 258 SUPERFAMILY SSF51366 1 257 1.88E-70 T 15-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 NJ56_17265 b6c1f7768004df5e94e643510387b0f1 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 6.2E-112 T 15-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 NJ56_17265 b6c1f7768004df5e94e643510387b0f1 258 Gene3D G3DSA:3.20.20.70 1 258 1.3E-89 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_17265 b6c1f7768004df5e94e643510387b0f1 258 Pfam PF00977 Histidine biosynthesis protein 5 239 2.1E-74 T 15-10-2018 IPR006062 Histidine biosynthesis GO:0000105 NJ56_10595 7fd542a5d25d1626bf7a9b33d8ed1ec2 141 SUPERFAMILY SSF54919 1 140 1.7E-58 T 15-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_10595 7fd542a5d25d1626bf7a9b33d8ed1ec2 141 SMART SM00562 3 140 2.0E-84 T 15-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_10595 7fd542a5d25d1626bf7a9b33d8ed1ec2 141 Pfam PF00334 Nucleoside diphosphate kinase 4 138 9.4E-56 T 15-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_10595 7fd542a5d25d1626bf7a9b33d8ed1ec2 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 2.3E-38 T 15-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_10595 7fd542a5d25d1626bf7a9b33d8ed1ec2 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 2.3E-38 T 15-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_10595 7fd542a5d25d1626bf7a9b33d8ed1ec2 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 2.3E-38 T 15-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_10595 7fd542a5d25d1626bf7a9b33d8ed1ec2 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 2.3E-38 T 15-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_10595 7fd542a5d25d1626bf7a9b33d8ed1ec2 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 2.3E-38 T 15-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_10595 7fd542a5d25d1626bf7a9b33d8ed1ec2 141 Gene3D G3DSA:3.30.70.141 1 141 1.6E-58 T 15-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_10595 7fd542a5d25d1626bf7a9b33d8ed1ec2 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.854 T 15-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_10595 7fd542a5d25d1626bf7a9b33d8ed1ec2 141 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 15-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_02450 614924eceb2a84ace51f341fe44d8b93 474 SUPERFAMILY SSF81340 16 453 7.06E-110 T 15-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 NJ56_02450 614924eceb2a84ace51f341fe44d8b93 474 Pfam PF00654 Voltage gated chloride channel 89 437 9.8E-90 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_02450 614924eceb2a84ace51f341fe44d8b93 474 Gene3D G3DSA:1.10.3080.10 31 472 6.4E-153 T 15-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 NJ56_02450 614924eceb2a84ace51f341fe44d8b93 474 PRINTS PR00762 Chloride channel signature 352 372 3.4E-28 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_02450 614924eceb2a84ace51f341fe44d8b93 474 PRINTS PR00762 Chloride channel signature 405 424 3.4E-28 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_02450 614924eceb2a84ace51f341fe44d8b93 474 PRINTS PR00762 Chloride channel signature 102 119 3.4E-28 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_02450 614924eceb2a84ace51f341fe44d8b93 474 PRINTS PR00762 Chloride channel signature 183 202 3.4E-28 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_02450 614924eceb2a84ace51f341fe44d8b93 474 PRINTS PR00762 Chloride channel signature 387 403 3.4E-28 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_07330 f3291c82b33187203542a097c8a2f2b6 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 3.8E-71 T 15-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 NJ56_07330 f3291c82b33187203542a097c8a2f2b6 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.254 T 15-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 NJ56_07330 f3291c82b33187203542a097c8a2f2b6 156 Gene3D G3DSA:1.10.455.10 2 155 1.5E-64 T 15-10-2018 IPR036823 Ribosomal protein S7 domain superfamily NJ56_07330 f3291c82b33187203542a097c8a2f2b6 156 SUPERFAMILY SSF47973 6 149 4.06E-60 T 15-10-2018 IPR036823 Ribosomal protein S7 domain superfamily NJ56_07330 f3291c82b33187203542a097c8a2f2b6 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 15-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07330 f3291c82b33187203542a097c8a2f2b6 156 PIRSF PIRSF002122 3 156 1.2E-63 T 15-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 NJ56_07330 f3291c82b33187203542a097c8a2f2b6 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 9.8E-66 T 15-10-2018 IPR023798 Ribosomal protein S7 domain NJ56_09230 5da6089365db2d41e626ecc648cbebfb 219 SUPERFAMILY SSF100950 1 146 6.51E-48 T 15-10-2018 IPR037171 NagB/RpiA transferase-like NJ56_09230 5da6089365db2d41e626ecc648cbebfb 219 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 7.6E-58 T 15-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 NJ56_09230 5da6089365db2d41e626ecc648cbebfb 219 Gene3D G3DSA:3.40.50.1360 7 207 1.5E-75 T 15-10-2018 NJ56_09230 5da6089365db2d41e626ecc648cbebfb 219 Gene3D G3DSA:3.30.70.260 125 196 1.5E-75 T 15-10-2018 NJ56_09230 5da6089365db2d41e626ecc648cbebfb 219 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 34.105 T 15-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 NJ56_09230 5da6089365db2d41e626ecc648cbebfb 219 SUPERFAMILY SSF75445 127 198 7.85E-24 T 15-10-2018 NJ56_09230 5da6089365db2d41e626ecc648cbebfb 219 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 215 2.5E-69 T 15-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 NJ56_14910 31f09563c150036eac222071f32c8117 509 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 15-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 NJ56_14910 31f09563c150036eac222071f32c8117 509 SMART SM01002 146 311 7.2E-86 T 15-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain NJ56_14910 31f09563c150036eac222071f32c8117 509 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 7.2E-53 T 15-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal NJ56_14910 31f09563c150036eac222071f32c8117 509 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 368 1.5E-75 T 15-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain NJ56_14910 31f09563c150036eac222071f32c8117 509 SMART SM01003 4 137 1.9E-77 T 15-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal NJ56_14910 31f09563c150036eac222071f32c8117 509 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 170 195 - T 15-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 NJ56_14910 31f09563c150036eac222071f32c8117 509 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 508 2.9E-293 T 15-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 NJ56_14910 31f09563c150036eac222071f32c8117 509 PIRSF PIRSF000203 1 508 1.2E-279 T 15-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 NJ56_14910 31f09563c150036eac222071f32c8117 509 SUPERFAMILY SSF51735 137 316 1.32E-37 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_14910 31f09563c150036eac222071f32c8117 509 SUPERFAMILY SSF52283 1 168 8.08E-58 T 15-10-2018 NJ56_14910 31f09563c150036eac222071f32c8117 509 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 426 508 5.3E-36 T 15-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 NJ56_14910 31f09563c150036eac222071f32c8117 509 Gene3D G3DSA:3.40.50.720 137 318 3.8E-164 T 15-10-2018 NJ56_14910 31f09563c150036eac222071f32c8117 509 Gene3D G3DSA:3.40.50.720 3 365 3.8E-164 T 15-10-2018 NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 SUPERFAMILY SSF52821 111 221 9.17E-32 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 Pfam PF12840 Helix-turn-helix domain 18 75 1.9E-7 T 15-10-2018 NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 SMART SM00450 122 218 1.2E-25 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 SUPERFAMILY SSF46785 8 99 2.06E-19 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 Gene3D G3DSA:1.10.10.10 3 106 6.8E-21 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 Pfam PF00581 Rhodanese-like domain 124 215 1.2E-16 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 ProSitePatterns PS00380 Rhodanese signature 1. 147 158 - T 15-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 Gene3D G3DSA:3.40.250.10 107 223 7.5E-29 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 20 35 2.5E-5 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 67 82 2.5E-5 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 2.5E-5 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_13885 46e6dff21fd0259ef7e8f55daa1734dc 223 SMART SM00418 18 96 1.2E-14 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_12165 c6d4796c63785add8df3655a503deab9 258 Pfam PF03406 Phage tail fibre repeat 38 75 1.3E-9 T 15-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 NJ56_12165 c6d4796c63785add8df3655a503deab9 258 Pfam PF03406 Phage tail fibre repeat 126 162 5.0E-10 T 15-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 NJ56_12165 c6d4796c63785add8df3655a503deab9 258 Pfam PF03406 Phage tail fibre repeat 82 119 1.4E-16 T 15-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 NJ56_03760 3ca6351c91445cece4cfc53dcbd22f91 294 PIRSF PIRSF004654 1 292 1.7E-117 T 15-10-2018 IPR023605 Lipoprotein NlpI NJ56_03760 3ca6351c91445cece4cfc53dcbd22f91 294 Gene3D G3DSA:1.25.40.10 20 294 9.8E-117 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_03760 3ca6351c91445cece4cfc53dcbd22f91 294 SMART SM00028 96 129 2.0E-4 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_03760 3ca6351c91445cece4cfc53dcbd22f91 294 SMART SM00028 62 95 0.0033 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_03760 3ca6351c91445cece4cfc53dcbd22f91 294 Pfam PF13181 Tetratricopeptide repeat 62 94 0.033 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_03760 3ca6351c91445cece4cfc53dcbd22f91 294 SUPERFAMILY SSF48452 27 283 4.3E-74 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_03760 3ca6351c91445cece4cfc53dcbd22f91 294 Pfam PF07719 Tetratricopeptide repeat 96 129 5.3E-5 T 15-10-2018 IPR013105 Tetratricopeptide repeat 2 NJ56_06535 bc67ef99e5675302f8a63b3aa5e5e472 226 Gene3D G3DSA:2.40.33.20 1 226 2.7E-80 T 15-10-2018 NJ56_06535 bc67ef99e5675302f8a63b3aa5e5e472 226 Pfam PF03473 MOSC domain 46 155 5.8E-22 T 15-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 NJ56_06535 bc67ef99e5675302f8a63b3aa5e5e472 226 Pfam PF03475 3-alpha domain 168 211 9.7E-14 T 15-10-2018 IPR005163 3-alpha domain NJ56_06535 bc67ef99e5675302f8a63b3aa5e5e472 226 SUPERFAMILY SSF50800 5 222 1.46E-73 T 15-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily NJ56_17280 15dc979d0fcf9368596e80338e20b161 297 SUPERFAMILY SSF53448 1 291 1.87E-54 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_17280 15dc979d0fcf9368596e80338e20b161 297 Pfam PF00483 Nucleotidyl transferase 5 245 2.1E-18 T 15-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 NJ56_17280 15dc979d0fcf9368596e80338e20b161 297 Gene3D G3DSA:3.90.550.10 2 297 1.1E-74 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_05160 c2f6bd6fa54b2d73b77afe277e46c942 399 SUPERFAMILY SSF46548 9 84 1.48E-15 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_05160 c2f6bd6fa54b2d73b77afe277e46c942 399 Pfam PF02754 Cysteine-rich domain 296 379 4.3E-14 T 15-10-2018 IPR004017 Cysteine-rich domain NJ56_05160 c2f6bd6fa54b2d73b77afe277e46c942 399 Pfam PF02754 Cysteine-rich domain 166 252 3.8E-14 T 15-10-2018 IPR004017 Cysteine-rich domain NJ56_05160 c2f6bd6fa54b2d73b77afe277e46c942 399 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 6 398 3.9E-230 T 15-10-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0009061|GO:0016020 NJ56_05160 c2f6bd6fa54b2d73b77afe277e46c942 399 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 59 70 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_05160 c2f6bd6fa54b2d73b77afe277e46c942 399 Pfam PF13183 4Fe-4S dicluster domain 9 73 8.7E-10 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_05160 c2f6bd6fa54b2d73b77afe277e46c942 399 Gene3D G3DSA:1.10.1060.10 2 93 1.6E-8 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 Gene3D G3DSA:1.10.287.130 657 730 5.8E-14 T 15-10-2018 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 SMART SM00387 775 885 5.6E-31 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 Pfam PF13492 GAF domain 538 645 7.3E-12 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 777 884 2.5E-21 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 Gene3D G3DSA:3.30.565.10 733 889 8.7E-34 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 Gene3D G3DSA:3.30.450.40 511 656 1.4E-34 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 22 230 3.5E-97 T 15-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 SUPERFAMILY SSF47384 660 732 4.51E-14 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 SMART SM00388 664 731 1.3E-13 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 PRINTS PR00344 Bacterial sensor protein C-terminal signature 869 882 6.6E-11 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 PRINTS PR00344 Bacterial sensor protein C-terminal signature 845 863 6.6E-11 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 PRINTS PR00344 Bacterial sensor protein C-terminal signature 830 840 6.6E-11 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 PRINTS PR00344 Bacterial sensor protein C-terminal signature 812 826 6.6E-11 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 SUPERFAMILY SSF55781 510 655 1.73E-5 T 15-10-2018 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 Pfam PF13493 Domain of unknown function (DUF4118) 403 507 2.9E-30 T 15-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 Gene3D G3DSA:3.40.50.300 19 229 2.4E-100 T 15-10-2018 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 SUPERFAMILY SSF52402 253 350 1.17E-5 T 15-10-2018 NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 Gene3D G3DSA:1.20.120.620 396 502 4.0E-39 T 15-10-2018 IPR038318 KdpD, transmembrane domain superfamily NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 SUPERFAMILY SSF55874 720 887 2.49E-39 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_00455 b668db12a2f5aab879eca420898ce2c6 897 Pfam PF00512 His Kinase A (phospho-acceptor) domain 665 731 3.2E-11 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_17480 3a4a6d2a4d1983f5aecac1375a8cc70f 240 SUPERFAMILY SSF52540 1 235 7.42E-81 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17480 3a4a6d2a4d1983f5aecac1375a8cc70f 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_17480 3a4a6d2a4d1983f5aecac1375a8cc70f 240 SMART SM00382 26 213 3.2E-16 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17480 3a4a6d2a4d1983f5aecac1375a8cc70f 240 PIRSF PIRSF039085 1 240 1.0E-109 T 15-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 NJ56_17480 3a4a6d2a4d1983f5aecac1375a8cc70f 240 Gene3D G3DSA:3.40.50.300 1 239 1.5E-80 T 15-10-2018 NJ56_17480 3a4a6d2a4d1983f5aecac1375a8cc70f 240 Pfam PF00005 ABC transporter 17 165 5.3E-37 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_01000 411aebca3c97e02039c65e39745bd4a6 164 Gene3D G3DSA:2.40.100.10 1 164 4.4E-72 T 15-10-2018 IPR029000 Cyclophilin-like domain superfamily NJ56_01000 411aebca3c97e02039c65e39745bd4a6 164 SUPERFAMILY SSF50891 1 162 5.99E-60 T 15-10-2018 IPR029000 Cyclophilin-like domain superfamily NJ56_01000 411aebca3c97e02039c65e39745bd4a6 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 161 7.1E-49 T 15-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 NJ56_01000 411aebca3c97e02039c65e39745bd4a6 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 15-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 NJ56_01000 411aebca3c97e02039c65e39745bd4a6 164 PIRSF PIRSF001467 1 164 2.6E-30 T 15-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 NJ56_01000 411aebca3c97e02039c65e39745bd4a6 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 2.2E-11 T 15-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 NJ56_01000 411aebca3c97e02039c65e39745bd4a6 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 2.2E-11 T 15-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 NJ56_01000 411aebca3c97e02039c65e39745bd4a6 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 2.2E-11 T 15-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 NJ56_07005 1e06fca296af83a8911592684e2a65b9 397 Gene3D G3DSA:1.20.1250.20 6 389 3.6E-31 T 15-10-2018 NJ56_07005 1e06fca296af83a8911592684e2a65b9 397 Pfam PF07690 Major Facilitator Superfamily 14 354 2.7E-18 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_07005 1e06fca296af83a8911592684e2a65b9 397 SUPERFAMILY SSF103473 10 387 1.48E-30 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_15930 2132390ded2486c1019136788e1b68a6 304 SUPERFAMILY SSF51735 3 136 1.14E-40 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_15930 2132390ded2486c1019136788e1b68a6 304 Gene3D G3DSA:3.40.50.720 1 120 1.5E-31 T 15-10-2018 NJ56_15930 2132390ded2486c1019136788e1b68a6 304 SUPERFAMILY SSF55347 123 264 1.05E-41 T 15-10-2018 NJ56_15930 2132390ded2486c1019136788e1b68a6 304 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 121 5.8E-26 T 15-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 NJ56_15930 2132390ded2486c1019136788e1b68a6 304 Gene3D G3DSA:3.30.360.10 121 304 4.3E-52 T 15-10-2018 NJ56_02535 8ba09f297ea5def29137f75bbf24963b 218 SMART SM00947 30 192 4.2E-65 T 15-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NJ56_02535 8ba09f297ea5def29137f75bbf24963b 218 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 15-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NJ56_02535 8ba09f297ea5def29137f75bbf24963b 218 Pfam PF00484 Carbonic anhydrase 38 187 6.3E-50 T 15-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NJ56_02535 8ba09f297ea5def29137f75bbf24963b 218 SUPERFAMILY SSF53056 1 211 7.59E-74 T 15-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 NJ56_02535 8ba09f297ea5def29137f75bbf24963b 218 Gene3D G3DSA:3.40.1050.10 1 217 1.6E-85 T 15-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 NJ56_02535 8ba09f297ea5def29137f75bbf24963b 218 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 15-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NJ56_02955 3a0c85b0835d58ed1c92ba0a8aabc86b 156 Gene3D G3DSA:3.10.50.40 14 142 3.7E-41 T 15-10-2018 NJ56_02955 3a0c85b0835d58ed1c92ba0a8aabc86b 156 Gene3D G3DSA:2.40.10.330 73 129 3.7E-41 T 15-10-2018 NJ56_02955 3a0c85b0835d58ed1c92ba0a8aabc86b 156 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 114 1.0E-13 T 15-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain NJ56_02955 3a0c85b0835d58ed1c92ba0a8aabc86b 156 SUPERFAMILY SSF54534 4 143 2.16E-36 T 15-10-2018 NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 SUPERFAMILY SSF49303 190 304 8.02E-19 T 15-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 Pfam PF00703 Glycosyl hydrolases family 2 197 304 1.8E-9 T 15-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 46 123 1.7E-9 T 15-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 SUPERFAMILY SSF51445 302 624 8.26E-74 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 Gene3D G3DSA:2.60.120.260 17 185 1.0E-30 T 15-10-2018 IPR008979 Galactose-binding-like domain superfamily NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 Gene3D G3DSA:2.60.40.10 205 302 7.2E-16 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 Gene3D G3DSA:3.20.20.80 304 622 1.3E-64 T 15-10-2018 NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 311 510 6.9E-9 T 15-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 SUPERFAMILY SSF49785 13 182 8.5E-33 T 15-10-2018 IPR008979 Galactose-binding-like domain superfamily NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 PRINTS PR00132 Glycosyl hydrolase family 2 signature 346 364 6.2E-5 T 15-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 PRINTS PR00132 Glycosyl hydrolase family 2 signature 411 426 6.2E-5 T 15-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_00780 a27515cbf5db8a8bf2c994c02c7c08fb 727 PRINTS PR00132 Glycosyl hydrolase family 2 signature 92 107 6.2E-5 T 15-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_15735 9090530b9879930533cb06da080c9e32 227 SUPERFAMILY SSF63848 121 226 5.89E-31 T 15-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 NJ56_15735 9090530b9879930533cb06da080c9e32 227 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 226 3.2E-72 T 15-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 NJ56_15735 9090530b9879930533cb06da080c9e32 227 Gene3D G3DSA:2.160.20.70 119 227 2.9E-29 T 15-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 NJ56_15735 9090530b9879930533cb06da080c9e32 227 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 5 227 28.688 T 15-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 NJ56_15735 9090530b9879930533cb06da080c9e32 227 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 123 223 6.7E-31 T 15-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 NJ56_15735 9090530b9879930533cb06da080c9e32 227 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 102 4.8E-33 T 15-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 NJ56_15735 9090530b9879930533cb06da080c9e32 227 Gene3D G3DSA:3.30.750.120 1 115 1.7E-41 T 15-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 Pfam PF00009 Elongation factor Tu GTP binding domain 4 194 3.9E-57 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 SUPERFAMILY SSF54980 398 512 1.1E-25 T 15-10-2018 IPR035647 EF-G domain III/V-like NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 PRINTS PR00315 GTP-binding elongation factor signature 87 98 9.6E-15 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 PRINTS PR00315 GTP-binding elongation factor signature 123 132 9.6E-15 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 PRINTS PR00315 GTP-binding elongation factor signature 71 81 9.6E-15 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 PRINTS PR00315 GTP-binding elongation factor signature 51 59 9.6E-15 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 PRINTS PR00315 GTP-binding elongation factor signature 7 20 9.6E-15 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 15-10-2018 IPR031157 Tr-type G domain, conserved site NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 Gene3D G3DSA:3.30.70.870 306 590 1.5E-127 T 15-10-2018 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 Gene3D G3DSA:3.40.50.300 1 198 1.6E-68 T 15-10-2018 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 SUPERFAMILY SSF52540 3 219 2.13E-57 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 Gene3D G3DSA:2.40.50.250 483 599 1.5E-127 T 15-10-2018 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 Gene3D G3DSA:2.40.30.10 199 299 1.2E-35 T 15-10-2018 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 134 1.2E-25 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 Pfam PF00679 Elongation factor G C-terminus 396 476 1.1E-21 T 15-10-2018 IPR000640 Elongation factor EFG, domain V-like NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 SUPERFAMILY SSF54980 302 387 1.58E-15 T 15-10-2018 IPR035647 EF-G domain III/V-like NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 2.4E-288 T 15-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 Gene3D G3DSA:3.30.70.240 389 482 1.5E-127 T 15-10-2018 NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 SUPERFAMILY SSF50447 151 299 3.53E-32 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_06050 d8e7f8f0f3a2b2dfe0ca139abe6b76f2 607 Pfam PF03144 Elongation factor Tu domain 2 219 289 2.1E-11 T 15-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 NJ56_01485 65235cd69d8198a46f10ff2d52412ddc 78 Gene3D G3DSA:1.10.287.1040 2 78 5.4E-25 T 15-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 NJ56_01485 65235cd69d8198a46f10ff2d52412ddc 78 SUPERFAMILY SSF116842 4 70 8.37E-21 T 15-10-2018 NJ56_01485 65235cd69d8198a46f10ff2d52412ddc 78 PIRSF PIRSF006488 2 78 1.5E-22 T 15-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 NJ56_01485 65235cd69d8198a46f10ff2d52412ddc 78 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 8 68 16.384 T 15-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 NJ56_01485 65235cd69d8198a46f10ff2d52412ddc 78 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 8 63 5.9E-23 T 15-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 NJ56_01485 65235cd69d8198a46f10ff2d52412ddc 78 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 18 50 3.0E-10 T 15-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 NJ56_01485 65235cd69d8198a46f10ff2d52412ddc 78 Pfam PF02609 Exonuclease VII small subunit 9 60 5.5E-20 T 15-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 NJ56_05260 91daece9c919726288da7e83efa41c1f 303 Gene3D G3DSA:1.10.443.10 116 292 6.1E-57 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_05260 91daece9c919726288da7e83efa41c1f 303 Pfam PF00589 Phage integrase family 117 284 1.7E-51 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_05260 91daece9c919726288da7e83efa41c1f 303 Gene3D G3DSA:1.10.150.130 9 103 1.3E-19 T 15-10-2018 IPR010998 Integrase/recombinase, N-terminal NJ56_05260 91daece9c919726288da7e83efa41c1f 303 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 12 95 6.1E-22 T 15-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 NJ56_05260 91daece9c919726288da7e83efa41c1f 303 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 13 300 1.6E-107 T 15-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 NJ56_05260 91daece9c919726288da7e83efa41c1f 303 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 10 298 56.441 T 15-10-2018 IPR023009 Tyrosine recombinase XerC/XerD NJ56_05260 91daece9c919726288da7e83efa41c1f 303 SUPERFAMILY SSF56349 113 296 1.12E-52 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_05260 91daece9c919726288da7e83efa41c1f 303 SUPERFAMILY SSF47823 11 102 1.96E-9 T 15-10-2018 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.504 T 15-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 2.0E-33 T 15-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 2.0E-33 T 15-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 2.0E-33 T 15-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 SUPERFAMILY SSF56053 1 82 2.49E-22 T 15-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 15-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 Pfam PF00347 Ribosomal protein L6 11 82 7.5E-19 T 15-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 Pfam PF00347 Ribosomal protein L6 90 164 6.6E-19 T 15-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 SUPERFAMILY SSF56053 83 177 9.08E-36 T 15-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.5E-72 T 15-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 PIRSF PIRSF002162 1 177 7.6E-44 T 15-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 Gene3D G3DSA:3.90.930.12 83 177 9.7E-40 T 15-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07440 536bc8cad3f2f2b8e2ea2cd541d33e09 177 Gene3D G3DSA:3.90.930.12 1 82 7.7E-29 T 15-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 SUPERFAMILY SSF46565 1 104 6.93E-26 T 15-10-2018 IPR036869 Chaperone J-domain superfamily NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 SUPERFAMILY SSF49493 217 296 9.81E-18 T 15-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 SUPERFAMILY SSF49493 128 223 1.44E-17 T 15-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 Gene3D G3DSA:1.10.287.110 2 122 1.1E-31 T 15-10-2018 IPR036869 Chaperone J-domain superfamily NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 Pfam PF01556 DnaJ C terminal domain 133 289 4.0E-33 T 15-10-2018 IPR002939 Chaperone DnaJ, C-terminal NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 SMART SM00271 4 61 6.7E-26 T 15-10-2018 IPR001623 DnaJ domain NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 Gene3D G3DSA:2.60.260.20 128 212 9.0E-21 T 15-10-2018 NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 Gene3D G3DSA:2.60.260.20 213 288 1.9E-29 T 15-10-2018 NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 PRINTS PR00625 DnaJ domain signature 7 25 1.3E-21 T 15-10-2018 IPR001623 DnaJ domain NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 PRINTS PR00625 DnaJ domain signature 25 40 1.3E-21 T 15-10-2018 IPR001623 DnaJ domain NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 PRINTS PR00625 DnaJ domain signature 41 61 1.3E-21 T 15-10-2018 IPR001623 DnaJ domain NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 PRINTS PR00625 DnaJ domain signature 80 99 1.3E-21 T 15-10-2018 IPR001623 DnaJ domain NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 Pfam PF00226 DnaJ domain 5 66 1.9E-23 T 15-10-2018 IPR001623 DnaJ domain NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 Gene3D G3DSA:1.20.5.460 289 316 5.9E-7 T 15-10-2018 NJ56_14650 e0ee89a86f14fc3b144391b1de971586 316 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 15-10-2018 IPR018253 DnaJ domain, conserved site NJ56_07310 cdbb59082632dd6ea49662de8b5c7eb1 129 Pfam PF02635 DsrE/DsrF-like family 4 129 1.2E-28 T 15-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein NJ56_07310 cdbb59082632dd6ea49662de8b5c7eb1 129 Hamap MF_00390 Sulfurtransferase TusD [tusD]. 2 129 39.893 T 15-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 NJ56_07310 cdbb59082632dd6ea49662de8b5c7eb1 129 SUPERFAMILY SSF75169 1 129 1.22E-37 T 15-10-2018 IPR027396 DsrEFH-like NJ56_07310 cdbb59082632dd6ea49662de8b5c7eb1 129 Gene3D G3DSA:3.40.1260.10 1 129 1.5E-57 T 15-10-2018 IPR027396 DsrEFH-like NJ56_07310 cdbb59082632dd6ea49662de8b5c7eb1 129 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 3 129 1.2E-54 T 15-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 NJ56_10245 0c0ffccd63afe80f50d6544441655e80 404 Gene3D G3DSA:1.10.443.10 213 387 5.8E-17 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_10245 0c0ffccd63afe80f50d6544441655e80 404 SUPERFAMILY SSF56349 109 387 3.83E-56 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_10245 0c0ffccd63afe80f50d6544441655e80 404 Gene3D G3DSA:3.30.160.390 6 94 2.3E-24 T 15-10-2018 IPR038488 Integrase, DNA-binding domain superfamily NJ56_10245 0c0ffccd63afe80f50d6544441655e80 404 Gene3D G3DSA:1.10.150.130 102 212 1.3E-27 T 15-10-2018 IPR010998 Integrase/recombinase, N-terminal NJ56_10245 0c0ffccd63afe80f50d6544441655e80 404 Pfam PF13356 Arm DNA-binding domain 8 92 3.9E-16 T 15-10-2018 IPR025166 Integrase, DNA-binding domain NJ56_10245 0c0ffccd63afe80f50d6544441655e80 404 Pfam PF00589 Phage integrase family 214 377 7.2E-28 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_01585 d89a444f24a29a338ac615823840a19a 314 SUPERFAMILY SSF53850 25 309 4.27E-66 T 15-10-2018 NJ56_01585 d89a444f24a29a338ac615823840a19a 314 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 26 298 8.5E-67 T 15-10-2018 IPR011862 Phosphate binding protein GO:0042301 NJ56_01585 d89a444f24a29a338ac615823840a19a 314 Gene3D G3DSA:3.40.190.10 114 256 1.1E-101 T 15-10-2018 NJ56_01585 d89a444f24a29a338ac615823840a19a 314 Pfam PF12849 PBP superfamily domain 29 269 1.3E-30 T 15-10-2018 IPR024370 PBP domain NJ56_01585 d89a444f24a29a338ac615823840a19a 314 Gene3D G3DSA:3.40.190.10 29 300 1.1E-101 T 15-10-2018 NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 SMART SM00842 10 196 1.3E-96 T 15-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 Gene3D G3DSA:3.90.640.10 235 300 2.0E-115 T 15-10-2018 NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 418 29.645 T 15-10-2018 IPR020823 Cell division protein FtsA NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 1.5E-161 T 15-10-2018 IPR020823 Cell division protein FtsA NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 Gene3D G3DSA:3.30.420.40 197 359 2.0E-115 T 15-10-2018 NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 Gene3D G3DSA:3.30.1490.110 87 169 2.0E-115 T 15-10-2018 NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 SUPERFAMILY SSF53067 8 223 3.56E-62 T 15-10-2018 NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 Pfam PF14450 Cell division protein FtsA 207 381 2.0E-24 T 15-10-2018 NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 3.5E-30 T 15-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 PIRSF PIRSF003101 1 418 1.1E-153 T 15-10-2018 IPR020823 Cell division protein FtsA NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 Gene3D G3DSA:3.30.420.40 13 379 2.0E-115 T 15-10-2018 NJ56_02695 aff45d9b7699e242f7d2c26714ce20ea 418 SUPERFAMILY SSF53067 198 384 2.29E-47 T 15-10-2018 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 Pfam PF00750 tRNA synthetases class I (R) 103 446 2.5E-167 T 15-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 577 28.42 T 15-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 Pfam PF05746 DALR anticodon binding domain 460 577 2.8E-33 T 15-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 SUPERFAMILY SSF52374 108 451 5.32E-96 T 15-10-2018 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 SMART SM01016 5 87 4.2E-28 T 15-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 15-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 SUPERFAMILY SSF47323 454 577 2.62E-34 T 15-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 Gene3D G3DSA:3.40.50.620 108 453 2.5E-109 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 Gene3D G3DSA:1.10.730.10 454 577 3.6E-32 T 15-10-2018 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 3 577 6.8E-204 T 15-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 3.3E-26 T 15-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 303 324 3.3E-26 T 15-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 3.3E-26 T 15-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 3.3E-26 T 15-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 87 8.9E-22 T 15-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 SUPERFAMILY SSF55190 2 96 7.06E-22 T 15-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 SMART SM00836 460 577 1.9E-35 T 15-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 NJ56_15905 0422bb2c34024b48e4572f1e23b4b693 577 Gene3D G3DSA:3.30.1360.70 1 106 6.0E-35 T 15-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 NJ56_16220 19e9f1c951a406d2899e5ab07ba55734 495 Pfam PF00171 Aldehyde dehydrogenase family 12 461 1.1E-118 T 15-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 NJ56_16220 19e9f1c951a406d2899e5ab07ba55734 495 SUPERFAMILY SSF53720 4 458 3.4E-121 T 15-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 NJ56_16220 19e9f1c951a406d2899e5ab07ba55734 495 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 6 489 2.0E-253 T 15-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 NJ56_16220 19e9f1c951a406d2899e5ab07ba55734 495 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 15-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 NJ56_16220 19e9f1c951a406d2899e5ab07ba55734 495 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 15-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 NJ56_16220 19e9f1c951a406d2899e5ab07ba55734 495 Gene3D G3DSA:3.40.605.10 10 452 6.5E-140 T 15-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 NJ56_16220 19e9f1c951a406d2899e5ab07ba55734 495 Gene3D G3DSA:3.40.309.10 250 440 6.5E-140 T 15-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 NJ56_16220 19e9f1c951a406d2899e5ab07ba55734 495 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 4 489 57.279 T 15-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 NJ56_08790 adb751913ba4017b7a7c2fd11135f5c4 385 SUPERFAMILY SSF56796 1 384 3.01E-111 T 15-10-2018 NJ56_08790 adb751913ba4017b7a7c2fd11135f5c4 385 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 262 282 - T 15-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 NJ56_08790 adb751913ba4017b7a7c2fd11135f5c4 385 Gene3D G3DSA:1.20.1090.10 183 385 1.1E-48 T 15-10-2018 NJ56_08790 adb751913ba4017b7a7c2fd11135f5c4 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 357 8.8E-93 T 15-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 NJ56_08790 adb751913ba4017b7a7c2fd11135f5c4 385 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 171 199 - T 15-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 NJ56_08790 adb751913ba4017b7a7c2fd11135f5c4 385 Gene3D G3DSA:3.40.50.1970 1 182 5.3E-50 T 15-10-2018 NJ56_00855 f135fd67d9f007e9f225d93d15e29b45 269 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 15-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NJ56_00855 f135fd67d9f007e9f225d93d15e29b45 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 7.9E-12 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_00855 f135fd67d9f007e9f225d93d15e29b45 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 7.9E-12 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_00855 f135fd67d9f007e9f225d93d15e29b45 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 7.9E-12 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_00855 f135fd67d9f007e9f225d93d15e29b45 269 Gene3D G3DSA:3.40.50.720 1 260 1.1E-53 T 15-10-2018 NJ56_00855 f135fd67d9f007e9f225d93d15e29b45 269 SUPERFAMILY SSF51735 1 258 1.02E-55 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_00855 f135fd67d9f007e9f225d93d15e29b45 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.3E-17 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_00855 f135fd67d9f007e9f225d93d15e29b45 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.3E-17 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_00855 f135fd67d9f007e9f225d93d15e29b45 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.3E-17 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_00855 f135fd67d9f007e9f225d93d15e29b45 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.3E-17 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_00855 f135fd67d9f007e9f225d93d15e29b45 269 Pfam PF00106 short chain dehydrogenase 8 190 1.6E-39 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01455 967b05bd4a0971f787bc8b898c1ecffb 196 SUPERFAMILY SSF52317 5 189 5.73E-46 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_01455 967b05bd4a0971f787bc8b898c1ecffb 196 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 5 183 7.5E-64 T 15-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 NJ56_01455 967b05bd4a0971f787bc8b898c1ecffb 196 Pfam PF01965 DJ-1/PfpI family 4 169 3.6E-42 T 15-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 NJ56_01455 967b05bd4a0971f787bc8b898c1ecffb 196 Gene3D G3DSA:3.40.50.880 1 196 2.2E-53 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_14385 9c5f48c49451b1113acc9c141dd61cf7 334 Gene3D G3DSA:1.10.3470.10 6 333 8.3E-126 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_14385 9c5f48c49451b1113acc9c141dd61cf7 334 SUPERFAMILY SSF81345 8 327 2.22E-89 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_14385 9c5f48c49451b1113acc9c141dd61cf7 334 Pfam PF01032 FecCD transport family 17 327 8.8E-97 T 15-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 NJ56_02885 b61025bf7d5c1306d5f8ef88a834c6b7 433 SUPERFAMILY SSF54534 283 385 3.47E-31 T 15-10-2018 NJ56_02885 b61025bf7d5c1306d5f8ef88a834c6b7 433 Hamap MF_01183 Chaperone SurA [surA]. 9 428 34.015 T 15-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 NJ56_02885 b61025bf7d5c1306d5f8ef88a834c6b7 433 Pfam PF00639 PPIC-type PPIASE domain 289 380 2.3E-23 T 15-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 NJ56_02885 b61025bf7d5c1306d5f8ef88a834c6b7 433 Pfam PF00639 PPIC-type PPIASE domain 178 272 5.2E-20 T 15-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 NJ56_02885 b61025bf7d5c1306d5f8ef88a834c6b7 433 Gene3D G3DSA:1.10.4030.10 21 148 9.2E-45 T 15-10-2018 NJ56_02885 b61025bf7d5c1306d5f8ef88a834c6b7 433 SUPERFAMILY SSF109998 25 201 3.4E-44 T 15-10-2018 IPR027304 Trigger factor/SurA domain superfamily NJ56_02885 b61025bf7d5c1306d5f8ef88a834c6b7 433 SUPERFAMILY SSF54534 173 275 3.66E-27 T 15-10-2018 NJ56_02885 b61025bf7d5c1306d5f8ef88a834c6b7 433 Gene3D G3DSA:3.10.50.40 175 386 2.5E-85 T 15-10-2018 NJ56_02885 b61025bf7d5c1306d5f8ef88a834c6b7 433 Gene3D G3DSA:3.10.50.40 283 385 2.5E-85 T 15-10-2018 NJ56_02885 b61025bf7d5c1306d5f8ef88a834c6b7 433 Pfam PF09312 SurA N-terminal domain 25 142 4.3E-45 T 15-10-2018 IPR015391 SurA N-terminal NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Gene3D G3DSA:1.10.274.100 490 640 1.7E-38 T 15-10-2018 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Gene3D G3DSA:2.40.50.100 948 1022 5.5E-25 T 15-10-2018 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Gene3D G3DSA:1.10.1790.20 1135 1314 3.5E-59 T 15-10-2018 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Gene3D G3DSA:2.40.50.100 1023 1126 1.7E-28 T 15-10-2018 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 SMART SM00663 235 514 1.1E-184 T 15-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 8.3E-19 T 15-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Gene3D G3DSA:1.10.150.390 1316 1375 2.7E-28 T 15-10-2018 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 485 3.9E-27 T 15-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 393 1.2E-7 T 15-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Gene3D G3DSA:1.10.40.90 374 416 2.0E-21 T 15-10-2018 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 3.2E-27 T 15-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Gene3D G3DSA:1.10.132.30 641 790 3.9E-66 T 15-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1315 1.9E-78 T 15-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Gene3D G3DSA:2.40.50.100 1151 1215 3.5E-59 T 15-10-2018 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 SUPERFAMILY SSF64484 16 1364 0.0 T 15-10-2018 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1367 0.0 T 15-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 3.6E-89 T 15-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_04750 514b1ed8bb7452678d0928e79a7d81b2 1406 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1374 19.025 T 15-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_02315 821391c74bb88dda588b9fe4145e3209 242 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 108 115 - T 15-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 NJ56_02315 821391c74bb88dda588b9fe4145e3209 242 SUPERFAMILY SSF53448 11 233 8.97E-60 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_02315 821391c74bb88dda588b9fe4145e3209 242 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 10 233 42.883 T 15-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 NJ56_02315 821391c74bb88dda588b9fe4145e3209 242 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 12 233 6.6E-73 T 15-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 NJ56_02315 821391c74bb88dda588b9fe4145e3209 242 Gene3D G3DSA:3.90.550.10 7 240 7.0E-73 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_02315 821391c74bb88dda588b9fe4145e3209 242 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11 235 1.0E-80 T 15-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 SUPERFAMILY SSF63380 148 253 1.21E-28 T 15-10-2018 IPR017938 Riboflavin synthase-like beta-barrel NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 Gene3D G3DSA:3.40.50.80 256 396 7.1E-33 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 Gene3D G3DSA:1.10.490.10 1 143 3.7E-48 T 15-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 Hamap MF_01252 Flavohemoprotein [hmp]. 1 396 56.316 T 15-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 358 366 1.8E-5 T 15-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 183 195 1.8E-5 T 15-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 247 256 1.8E-5 T 15-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 1.8E-5 T 15-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 Pfam PF00042 Globin 7 102 1.2E-11 T 15-10-2018 IPR000971 Globin GO:0020037 NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 Gene3D G3DSA:2.40.30.10 149 254 1.2E-33 T 15-10-2018 NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 Pfam PF00175 Oxidoreductase NAD-binding domain 264 371 6.0E-13 T 15-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 SUPERFAMILY SSF46458 1 142 1.25E-35 T 15-10-2018 IPR009050 Globin-like superfamily NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 SUPERFAMILY SSF52343 255 395 4.98E-37 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_10490 59c79e07fbaeac606f9c848b714d9cf7 396 Pfam PF00970 Oxidoreductase FAD-binding domain 156 252 5.5E-9 T 15-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 NJ56_04910 d9df69c50d3e00b2e20080eec45b717c 260 Hamap MF_00901 3'-5' ssDNA/RNA exonuclease TatD [tatD]. 1 260 64.018 T 15-10-2018 IPR024918 3'-5' ssDNA/RNA exonuclease TatD GO:0008408 NJ56_04910 d9df69c50d3e00b2e20080eec45b717c 260 Gene3D G3DSA:3.20.20.140 1 260 1.6E-95 T 15-10-2018 NJ56_04910 d9df69c50d3e00b2e20080eec45b717c 260 PIRSF PIRSF005902 1 260 6.9E-72 T 15-10-2018 IPR001130 TatD family GO:0016788 NJ56_04910 d9df69c50d3e00b2e20080eec45b717c 260 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 15-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 NJ56_04910 d9df69c50d3e00b2e20080eec45b717c 260 Pfam PF01026 TatD related DNase 2 257 8.4E-68 T 15-10-2018 IPR001130 TatD family GO:0016788 NJ56_04910 d9df69c50d3e00b2e20080eec45b717c 260 SUPERFAMILY SSF51556 1 259 9.73E-80 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_04910 d9df69c50d3e00b2e20080eec45b717c 260 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 124 134 - T 15-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 NJ56_04190 9a04768ebe27010ff6f97bcf3a5393bb 118 PIRSF PIRSF000179 1 118 7.4E-50 T 15-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 NJ56_04190 9a04768ebe27010ff6f97bcf3a5393bb 118 SUPERFAMILY SSF81343 1 118 2.62E-51 T 15-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04190 9a04768ebe27010ff6f97bcf3a5393bb 118 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 3 118 8.0E-46 T 15-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 NJ56_04190 9a04768ebe27010ff6f97bcf3a5393bb 118 Hamap MF_00709 Fumarate reductase subunit D [frdD]. 1 118 26.675 T 15-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 NJ56_04190 9a04768ebe27010ff6f97bcf3a5393bb 118 Gene3D G3DSA:1.20.1300.10 1 118 2.3E-50 T 15-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04190 9a04768ebe27010ff6f97bcf3a5393bb 118 Pfam PF02313 Fumarate reductase subunit D 5 116 6.7E-50 T 15-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 NJ56_17370 069fb89e15a9d6b55fc9824053950be4 506 SUPERFAMILY SSF52540 253 489 6.47E-41 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17370 069fb89e15a9d6b55fc9824053950be4 506 SUPERFAMILY SSF52540 12 234 5.7E-56 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17370 069fb89e15a9d6b55fc9824053950be4 506 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_17370 069fb89e15a9d6b55fc9824053950be4 506 Pfam PF00005 ABC transporter 29 178 7.6E-29 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_17370 069fb89e15a9d6b55fc9824053950be4 506 Gene3D G3DSA:3.40.50.300 2 249 1.3E-57 T 15-10-2018 NJ56_17370 069fb89e15a9d6b55fc9824053950be4 506 Gene3D G3DSA:3.40.50.300 263 501 2.7E-37 T 15-10-2018 NJ56_17370 069fb89e15a9d6b55fc9824053950be4 506 Pfam PF00005 ABC transporter 280 434 4.0E-17 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_17370 069fb89e15a9d6b55fc9824053950be4 506 SMART SM00382 38 233 4.4E-9 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17370 069fb89e15a9d6b55fc9824053950be4 506 SMART SM00382 288 483 1.2 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_13105 1b248121d20570ac4e911746df8a5f7e 425 Gene3D G3DSA:1.20.1330.10 44 175 2.5E-72 T 15-10-2018 NJ56_13105 1b248121d20570ac4e911746df8a5f7e 425 Gene3D G3DSA:1.10.8.410 373 425 3.9E-23 T 15-10-2018 NJ56_13105 1b248121d20570ac4e911746df8a5f7e 425 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 139 4.8E-42 T 15-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NJ56_13105 1b248121d20570ac4e911746df8a5f7e 425 Gene3D G3DSA:2.170.280.10 176 315 2.5E-72 T 15-10-2018 NJ56_13105 1b248121d20570ac4e911746df8a5f7e 425 PRINTS PR00207 Flagellin signature 36 53 7.0E-30 T 15-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NJ56_13105 1b248121d20570ac4e911746df8a5f7e 425 PRINTS PR00207 Flagellin signature 75 94 7.0E-30 T 15-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NJ56_13105 1b248121d20570ac4e911746df8a5f7e 425 PRINTS PR00207 Flagellin signature 110 133 7.0E-30 T 15-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NJ56_13105 1b248121d20570ac4e911746df8a5f7e 425 SUPERFAMILY SSF64518 1 425 1.57E-96 T 15-10-2018 NJ56_13105 1b248121d20570ac4e911746df8a5f7e 425 Gene3D G3DSA:1.20.58.1830 4 32 2.5E-72 T 15-10-2018 NJ56_13105 1b248121d20570ac4e911746df8a5f7e 425 Gene3D G3DSA:2.30.220.10 190 288 2.5E-72 T 15-10-2018 NJ56_13105 1b248121d20570ac4e911746df8a5f7e 425 Pfam PF00700 Bacterial flagellin C-terminal helical region 340 424 2.6E-30 T 15-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NJ56_05950 1a11a5f0635b6c28240ab4ca44d60789 304 Gene3D G3DSA:1.10.10.10 3 91 6.5E-21 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_05950 1a11a5f0635b6c28240ab4ca44d60789 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.7E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05950 1a11a5f0635b6c28240ab4ca44d60789 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.7E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05950 1a11a5f0635b6c28240ab4ca44d60789 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.7E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05950 1a11a5f0635b6c28240ab4ca44d60789 304 Pfam PF03466 LysR substrate binding domain 89 290 4.2E-35 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_05950 1a11a5f0635b6c28240ab4ca44d60789 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 6.7E-16 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05950 1a11a5f0635b6c28240ab4ca44d60789 304 Gene3D G3DSA:3.40.190.290 92 297 9.9E-34 T 15-10-2018 NJ56_05950 1a11a5f0635b6c28240ab4ca44d60789 304 SUPERFAMILY SSF53850 90 293 1.16E-32 T 15-10-2018 NJ56_05950 1a11a5f0635b6c28240ab4ca44d60789 304 SUPERFAMILY SSF46785 3 111 2.18E-19 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_03855 4dec80b30d8c14bc48150b1244ad423b 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 6.3E-8 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_03855 4dec80b30d8c14bc48150b1244ad423b 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 279 293 6.3E-8 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_03855 4dec80b30d8c14bc48150b1244ad423b 351 SMART SM00388 136 196 2.2E-13 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_03855 4dec80b30d8c14bc48150b1244ad423b 351 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 245 348 2.6E-14 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_03855 4dec80b30d8c14bc48150b1244ad423b 351 Gene3D G3DSA:3.30.565.10 213 351 4.8E-26 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_03855 4dec80b30d8c14bc48150b1244ad423b 351 SMART SM00387 242 351 4.1E-22 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_03855 4dec80b30d8c14bc48150b1244ad423b 351 Pfam PF00512 His Kinase A (phospho-acceptor) domain 137 195 3.9E-11 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_03855 4dec80b30d8c14bc48150b1244ad423b 351 Gene3D G3DSA:1.10.287.130 87 197 2.7E-19 T 15-10-2018 NJ56_03855 4dec80b30d8c14bc48150b1244ad423b 351 SUPERFAMILY SSF47384 121 194 1.53E-13 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_03855 4dec80b30d8c14bc48150b1244ad423b 351 SUPERFAMILY SSF55874 186 348 2.23E-28 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_07290 c2d7eb29f8f2eb99532829459e17141a 193 SUPERFAMILY SSF54534 2 140 1.71E-32 T 15-10-2018 NJ56_07290 c2d7eb29f8f2eb99532829459e17141a 193 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 136 1.8E-8 T 15-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain NJ56_07290 c2d7eb29f8f2eb99532829459e17141a 193 Gene3D G3DSA:3.10.50.40 3 154 2.5E-60 T 15-10-2018 NJ56_07290 c2d7eb29f8f2eb99532829459e17141a 193 Gene3D G3DSA:2.40.10.330 71 121 2.5E-60 T 15-10-2018 NJ56_17400 9f9c1bfd00b7f2eb4a3ad39f87192435 289 SUPERFAMILY SSF46785 1 83 1.36E-18 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_17400 9f9c1bfd00b7f2eb4a3ad39f87192435 289 SUPERFAMILY SSF53850 85 287 4.34E-34 T 15-10-2018 NJ56_17400 9f9c1bfd00b7f2eb4a3ad39f87192435 289 Gene3D G3DSA:1.10.10.10 1 87 1.6E-21 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_17400 9f9c1bfd00b7f2eb4a3ad39f87192435 289 Pfam PF03466 LysR substrate binding domain 85 285 8.7E-37 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_17400 9f9c1bfd00b7f2eb4a3ad39f87192435 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.4E-16 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_17400 9f9c1bfd00b7f2eb4a3ad39f87192435 289 Gene3D G3DSA:3.40.190.290 89 289 2.0E-29 T 15-10-2018 NJ56_01530 49dcaed134f8e2e033cc54ea855a4259 322 SUPERFAMILY SSF82866 79 302 9.68E-43 T 15-10-2018 NJ56_01530 49dcaed134f8e2e033cc54ea855a4259 322 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 45 291 3.2E-89 T 15-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 NJ56_01530 49dcaed134f8e2e033cc54ea855a4259 322 PRINTS PR01755 Bacterial translocase SecF protein signature 159 173 1.8E-33 T 15-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NJ56_01530 49dcaed134f8e2e033cc54ea855a4259 322 PRINTS PR01755 Bacterial translocase SecF protein signature 207 225 1.8E-33 T 15-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NJ56_01530 49dcaed134f8e2e033cc54ea855a4259 322 PRINTS PR01755 Bacterial translocase SecF protein signature 239 254 1.8E-33 T 15-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NJ56_01530 49dcaed134f8e2e033cc54ea855a4259 322 PRINTS PR01755 Bacterial translocase SecF protein signature 44 59 1.8E-33 T 15-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NJ56_01530 49dcaed134f8e2e033cc54ea855a4259 322 Pfam PF07549 SecD/SecF GG Motif 40 66 1.6E-10 T 15-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site NJ56_01530 49dcaed134f8e2e033cc54ea855a4259 322 Pfam PF02355 Protein export membrane protein 117 300 1.5E-71 T 15-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial NJ56_01530 49dcaed134f8e2e033cc54ea855a4259 322 Gene3D G3DSA:1.20.1640.10 110 313 7.7E-16 T 15-10-2018 NJ56_01530 49dcaed134f8e2e033cc54ea855a4259 322 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 17 302 28.498 T 15-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 NJ56_01530 49dcaed134f8e2e033cc54ea855a4259 322 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 126 288 3.2E-56 T 15-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 SUPERFAMILY SSF102886 5 302 7.85E-141 T 15-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 Gene3D G3DSA:3.40.1500.10 1 302 1.5E-138 T 15-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 Pfam PF01218 Coproporphyrinogen III oxidase 9 302 1.0E-134 T 15-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 3 277 57.154 T 15-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 PIRSF PIRSF000166 2 303 1.5E-130 T 15-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 PRINTS PR00073 Coprogen oxidase signature 90 114 2.7E-87 T 15-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 PRINTS PR00073 Coprogen oxidase signature 162 191 2.7E-87 T 15-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 PRINTS PR00073 Coprogen oxidase signature 31 47 2.7E-87 T 15-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 PRINTS PR00073 Coprogen oxidase signature 125 147 2.7E-87 T 15-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 PRINTS PR00073 Coprogen oxidase signature 48 69 2.7E-87 T 15-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 PRINTS PR00073 Coprogen oxidase signature 262 288 2.7E-87 T 15-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 PRINTS PR00073 Coprogen oxidase signature 234 261 2.7E-87 T 15-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_11010 64fdafe3906c1604dcdbf13b10cccc1d 310 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 166 190 - T 15-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 NJ56_12950 ce44ac46bce613786ac854073be3cd3e 427 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 409 6.0E-93 T 15-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G NJ56_12950 ce44ac46bce613786ac854073be3cd3e 427 Pfam PF00460 Flagella basal body rod protein 4 33 3.2E-11 T 15-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 NJ56_12950 ce44ac46bce613786ac854073be3cd3e 427 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 349 426 4.7E-22 T 15-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain NJ56_12950 ce44ac46bce613786ac854073be3cd3e 427 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 15-10-2018 IPR019776 Flagellar basal body rod protein, conserved site NJ56_12950 ce44ac46bce613786ac854073be3cd3e 427 Gene3D G3DSA:2.60.98.20 146 309 5.6E-36 T 15-10-2018 IPR037058 Flagellar hook protein FlgE superfamily NJ56_12950 ce44ac46bce613786ac854073be3cd3e 427 Pfam PF07559 Flagellar basal body protein FlaE 173 308 3.9E-20 T 15-10-2018 IPR011491 Flagellar hook protein FlgE NJ56_12950 ce44ac46bce613786ac854073be3cd3e 427 SUPERFAMILY SSF117143 73 388 9.81E-79 T 15-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like NJ56_07865 bf6d337c642b8dfe30ef83185aaf24cd 468 Gene3D G3DSA:3.40.50.300 181 460 2.5E-104 T 15-10-2018 NJ56_07865 bf6d337c642b8dfe30ef83185aaf24cd 468 SMART SM00382 220 426 2.6E-4 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_07865 bf6d337c642b8dfe30ef83185aaf24cd 468 Gene3D G3DSA:1.10.860.10 17 180 2.2E-54 T 15-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal NJ56_07865 bf6d337c642b8dfe30ef83185aaf24cd 468 Pfam PF00772 DnaB-like helicase N terminal domain 24 125 4.5E-36 T 15-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 NJ56_07865 bf6d337c642b8dfe30ef83185aaf24cd 468 SUPERFAMILY SSF52540 201 453 9.1E-53 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_07865 bf6d337c642b8dfe30ef83185aaf24cd 468 SUPERFAMILY SSF48024 22 133 7.98E-38 T 15-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 NJ56_07865 bf6d337c642b8dfe30ef83185aaf24cd 468 Pfam PF03796 DnaB-like helicase C terminal domain 203 459 1.9E-111 T 15-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 NJ56_07865 bf6d337c642b8dfe30ef83185aaf24cd 468 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 23 461 7.3E-175 T 15-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 NJ56_11480 895b00df966e1a22ea075a1fbdb75b8d 166 Gene3D G3DSA:3.40.30.10 40 155 2.0E-20 T 15-10-2018 NJ56_11480 895b00df966e1a22ea075a1fbdb75b8d 166 Pfam PF00578 AhpC/TSA family 45 134 2.0E-11 T 15-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 NJ56_11480 895b00df966e1a22ea075a1fbdb75b8d 166 SUPERFAMILY SSF52833 41 157 1.97E-23 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_15550 0fa57257b48c56abd74337968640b9b5 158 Gene3D G3DSA:1.10.530.40 4 157 2.3E-41 T 15-10-2018 NJ56_15550 0fa57257b48c56abd74337968640b9b5 158 SUPERFAMILY SSF53955 5 155 6.14E-36 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_15550 0fa57257b48c56abd74337968640b9b5 158 Pfam PF00959 Phage lysozyme 33 148 1.8E-12 T 15-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 NJ56_16935 113669dcd1eb8dbffd1db2e6944b1e42 361 SUPERFAMILY SSF53383 1 359 1.75E-119 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_16935 113669dcd1eb8dbffd1db2e6944b1e42 361 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 188 207 - T 15-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site NJ56_16935 113669dcd1eb8dbffd1db2e6944b1e42 361 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 360 51.501 T 15-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 NJ56_16935 113669dcd1eb8dbffd1db2e6944b1e42 361 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 360 1.0E-156 T 15-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 NJ56_16935 113669dcd1eb8dbffd1db2e6944b1e42 361 Gene3D G3DSA:3.90.1150.10 259 361 8.4E-40 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_16935 113669dcd1eb8dbffd1db2e6944b1e42 361 PIRSF PIRSF000525 1 361 5.3E-149 T 15-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 NJ56_16935 113669dcd1eb8dbffd1db2e6944b1e42 361 Gene3D G3DSA:3.40.640.10 16 258 3.8E-91 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_16935 113669dcd1eb8dbffd1db2e6944b1e42 361 Pfam PF00266 Aminotransferase class-V 4 349 7.3E-65 T 15-10-2018 IPR000192 Aminotransferase class V domain NJ56_17005 ed45e4baf31662c7642f355f78460c8e 574 Pfam PF00664 ABC transporter transmembrane region 38 287 3.6E-9 T 15-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 NJ56_17005 ed45e4baf31662c7642f355f78460c8e 574 SMART SM00382 365 550 1.7E-12 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17005 ed45e4baf31662c7642f355f78460c8e 574 SUPERFAMILY SSF52540 335 572 3.24E-71 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17005 ed45e4baf31662c7642f355f78460c8e 574 SUPERFAMILY SSF90123 7 327 1.02E-39 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_17005 ed45e4baf31662c7642f355f78460c8e 574 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 11 534 1.1E-156 T 15-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 NJ56_17005 ed45e4baf31662c7642f355f78460c8e 574 Gene3D G3DSA:1.20.1560.10 1 321 5.7E-27 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_17005 ed45e4baf31662c7642f355f78460c8e 574 Pfam PF00005 ABC transporter 356 503 3.9E-31 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_17005 ed45e4baf31662c7642f355f78460c8e 574 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_17005 ed45e4baf31662c7642f355f78460c8e 574 Gene3D G3DSA:3.40.50.300 330 574 2.1E-77 T 15-10-2018 NJ56_10530 3e524313f1978d344fe8632a869a8c1e 164 Gene3D G3DSA:1.10.10.10 1 144 1.4E-56 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_10530 3e524313f1978d344fe8632a869a8c1e 164 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 1 164 51.734 T 15-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 NJ56_10530 3e524313f1978d344fe8632a869a8c1e 164 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 1.0E-67 T 15-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 NJ56_10530 3e524313f1978d344fe8632a869a8c1e 164 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 7.2E-48 T 15-10-2018 IPR000944 Transcription regulator Rrf2-type NJ56_10530 3e524313f1978d344fe8632a869a8c1e 164 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 15-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site NJ56_10530 3e524313f1978d344fe8632a869a8c1e 164 Pfam PF02082 Transcriptional regulator 1 83 1.0E-27 T 15-10-2018 IPR000944 Transcription regulator Rrf2-type NJ56_10530 3e524313f1978d344fe8632a869a8c1e 164 SUPERFAMILY SSF46785 2 133 5.25E-37 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 Gene3D G3DSA:2.60.40.10 143 224 3.7E-28 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 SUPERFAMILY SSF49354 18 141 4.97E-46 T 15-10-2018 IPR008962 PapD-like superfamily NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 98 115 - T 15-10-2018 IPR018046 Pili assembly chaperone, conserved site NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 23 141 1.5E-44 T 15-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 PRINTS PR00969 Pili chaperone signature 71 92 1.0E-35 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 PRINTS PR00969 Pili chaperone signature 158 173 1.0E-35 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 PRINTS PR00969 Pili chaperone signature 123 138 1.0E-35 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 PRINTS PR00969 Pili chaperone signature 24 33 1.0E-35 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 PRINTS PR00969 Pili chaperone signature 99 116 1.0E-35 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 Gene3D G3DSA:2.60.40.10 23 141 7.0E-45 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 SUPERFAMILY SSF49584 144 220 1.18E-25 T 15-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily NJ56_10775 afa2d9c481a768c8e5a6167a8e4b4efc 226 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 163 219 2.4E-18 T 15-10-2018 IPR016148 Pili assembly chaperone, C-terminal NJ56_13750 19d0f1b455bd5e91a5c8028823a7289c 243 Pfam PF08241 Methyltransferase domain 47 141 1.7E-22 T 15-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 NJ56_13750 19d0f1b455bd5e91a5c8028823a7289c 243 SUPERFAMILY SSF53335 27 235 1.23E-40 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_13750 19d0f1b455bd5e91a5c8028823a7289c 243 Gene3D G3DSA:3.40.50.150 24 242 2.4E-66 T 15-10-2018 NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 SUPERFAMILY SSF50447 792 889 7.66E-35 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 889 17.579 T 15-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Gene3D G3DSA:2.40.30.10 793 890 2.9E-34 T 15-10-2018 NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Gene3D G3DSA:3.40.50.300 389 562 2.2E-72 T 15-10-2018 NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Pfam PF00009 Elongation factor Tu GTP binding domain 395 552 2.1E-35 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 ProSitePatterns PS01176 Initiation factor 2 signature. 842 864 - T 15-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 SUPERFAMILY SSF46955 3 50 2.38E-13 T 15-10-2018 IPR009061 Putative DNA-binding domain superfamily NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Gene3D G3DSA:3.40.50.10050 685 792 6.1E-37 T 15-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 SUPERFAMILY SSF50447 565 646 3.93E-23 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 57 94 4.6E-16 T 15-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Gene3D G3DSA:3.30.56.50 2 50 5.2E-27 T 15-10-2018 NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 306 891 1.7E-290 T 15-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Gene3D G3DSA:2.40.30.10 563 681 8.5E-40 T 15-10-2018 NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 SUPERFAMILY SSF52540 391 559 1.4E-52 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Pfam PF03144 Elongation factor Tu domain 2 812 879 1.9E-7 T 15-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 1.0E-7 T 15-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 314 364 2.4E-14 T 15-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 Pfam PF11987 Translation-initiation factor 2 676 781 2.2E-36 T 15-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 SUPERFAMILY SSF52156 669 798 1.09E-37 T 15-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily NJ56_03785 bf8a9a97ebdad307d8579c924b695c7f 892 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 394 550 2.1E-33 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 SUPERFAMILY SSF50249 138 236 3.43E-15 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 Gene3D G3DSA:2.40.50.140 646 751 5.5E-23 T 15-10-2018 NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 SUPERFAMILY SSF50249 645 725 4.26E-21 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 Pfam PF00773 RNB domain 260 587 5.8E-106 T 15-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 Pfam PF00575 S1 RNA binding domain 642 724 2.2E-16 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 Hamap MF_01895 Ribonuclease R [rnr]. 38 726 56.971 T 15-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 TIGRFAM TIGR02063 RNase_R: ribonuclease R 19 726 2.1E-276 T 15-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 Pfam PF08461 Ribonuclease R winged-helix domain 23 85 9.2E-17 T 15-10-2018 IPR013668 Ribonuclease R winged-helix domain NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 SMART SM00955 260 588 1.3E-181 T 15-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 67 726 7.5E-269 T 15-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 SUPERFAMILY SSF50249 67 145 2.63E-17 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 SMART SM00357 86 145 4.5E-11 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 Gene3D G3DSA:2.40.50.140 71 148 2.6E-15 T 15-10-2018 NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 SMART SM00316 643 726 1.8E-12 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 Pfam PF08206 Ribonuclease B OB domain 158 213 6.5E-5 T 15-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 Pfam PF08206 Ribonuclease B OB domain 87 144 5.8E-21 T 15-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain NJ56_04065 26a3f01be3b479bcb66e0042657dca30 837 SUPERFAMILY SSF50249 222 642 2.57E-141 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_15480 d10616aa2af08b691067a9c872a2792f 214 Pfam PF01914 MarC family integral membrane protein 10 210 1.7E-73 T 15-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 NJ56_15480 d10616aa2af08b691067a9c872a2792f 214 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 8 206 1.5E-79 T 15-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 NJ56_07790 d8bd32e40375084d74a353f3b53d6f2b 525 SUPERFAMILY SSF161098 272 514 9.16E-57 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_07790 d8bd32e40375084d74a353f3b53d6f2b 525 Gene3D G3DSA:1.20.58.370 10 103 6.0E-38 T 15-10-2018 IPR035277 MalF, N-terminal NJ56_07790 d8bd32e40375084d74a353f3b53d6f2b 525 Gene3D G3DSA:3.10.650.10 106 279 1.8E-56 T 15-10-2018 NJ56_07790 d8bd32e40375084d74a353f3b53d6f2b 525 Gene3D G3DSA:2.40.430.10 126 215 1.8E-56 T 15-10-2018 NJ56_07790 d8bd32e40375084d74a353f3b53d6f2b 525 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 309 512 6.1E-19 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_07790 d8bd32e40375084d74a353f3b53d6f2b 525 SUPERFAMILY SSF160964 23 271 6.28E-85 T 15-10-2018 NJ56_07790 d8bd32e40375084d74a353f3b53d6f2b 525 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 108 271 2.0E-62 T 15-10-2018 IPR029345 Maltose transport system permease protein MalF, P2 domain NJ56_07790 d8bd32e40375084d74a353f3b53d6f2b 525 Gene3D G3DSA:1.10.3720.10 281 525 2.1E-69 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 SUPERFAMILY SSF55681 467 689 2.04E-55 T 15-10-2018 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 48.444 T 15-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 SMART SM00896 701 794 3.1E-43 T 15-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 Pfam PF03483 B3/4 domain 212 385 1.4E-70 T 15-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 5.5E-28 T 15-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 SUPERFAMILY SSF54991 696 794 1.83E-29 T 15-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 SMART SM00873 212 385 4.4E-96 T 15-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 SUPERFAMILY SSF56037 195 395 3.14E-76 T 15-10-2018 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 6.9E-22 T 15-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 SUPERFAMILY SSF50249 35 196 6.61E-51 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 Gene3D G3DSA:3.30.56.10 7 180 1.1E-75 T 15-10-2018 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 Gene3D G3DSA:3.50.40.10 197 395 8.0E-82 T 15-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 Pfam PF01588 Putative tRNA binding domain 45 145 1.8E-27 T 15-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 Gene3D G3DSA:3.30.70.380 702 795 2.7E-31 T 15-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 Gene3D G3DSA:3.30.930.10 485 693 2.1E-64 T 15-10-2018 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 Gene3D G3DSA:3.30.56.10 401 475 7.3E-29 T 15-10-2018 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 Gene3D G3DSA:2.40.50.140 39 154 1.1E-75 T 15-10-2018 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 SUPERFAMILY SSF46955 403 475 1.28E-21 T 15-10-2018 IPR009061 Putative DNA-binding domain superfamily NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 5.5E-291 T 15-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 NJ56_14270 322cab6f3e34cbb2170035e1f1e9e324 795 SMART SM00874 403 471 1.7E-32 T 15-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 NJ56_07240 6bb716b867f2488c618772aefd81ccaa 289 PRINTS PR00478 Phosphoribulokinase family signature 182 205 3.3E-29 T 15-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 NJ56_07240 6bb716b867f2488c618772aefd81ccaa 289 PRINTS PR00478 Phosphoribulokinase family signature 126 144 3.3E-29 T 15-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 NJ56_07240 6bb716b867f2488c618772aefd81ccaa 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 3.3E-29 T 15-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 NJ56_07240 6bb716b867f2488c618772aefd81ccaa 289 PRINTS PR00478 Phosphoribulokinase family signature 164 181 3.3E-29 T 15-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 NJ56_07240 6bb716b867f2488c618772aefd81ccaa 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 214 2.3E-74 T 15-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 NJ56_07240 6bb716b867f2488c618772aefd81ccaa 289 ProSitePatterns PS00567 Phosphoribulokinase signature. 164 177 - T 15-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 NJ56_07240 6bb716b867f2488c618772aefd81ccaa 289 Gene3D G3DSA:3.40.50.300 1 289 9.1E-115 T 15-10-2018 NJ56_07240 6bb716b867f2488c618772aefd81ccaa 289 SUPERFAMILY SSF52540 4 286 6.01E-47 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03965 48978f360eb320f83dff725ce9f50966 654 Gene3D G3DSA:3.60.21.10 21 360 5.0E-144 T 15-10-2018 IPR029052 Metallo-dependent phosphatase-like NJ56_03965 48978f360eb320f83dff725ce9f50966 654 PRINTS PR01607 Apyrase family signature 249 272 3.3E-32 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 PRINTS PR01607 Apyrase family signature 434 457 3.3E-32 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 PRINTS PR01607 Apyrase family signature 536 555 3.3E-32 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 PRINTS PR01607 Apyrase family signature 28 46 3.3E-32 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 PRINTS PR01607 Apyrase family signature 221 238 3.3E-32 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 PRINTS PR01607 Apyrase family signature 289 309 3.3E-32 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 ProSitePatterns PS00785 5'-nucleotidase signature 1. 30 42 - T 15-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 ProSitePatterns PS00786 5'-nucleotidase signature 2. 115 126 - T 15-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 Gene3D G3DSA:3.90.780.10 408 596 6.0E-51 T 15-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 SUPERFAMILY SSF55816 361 602 3.27E-39 T 15-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 Pfam PF00149 Calcineurin-like phosphoesterase 30 265 2.9E-10 T 15-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 Pfam PF02872 5'-nucleotidase, C-terminal domain 361 556 4.3E-21 T 15-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 SUPERFAMILY SSF56300 24 359 1.38E-84 T 15-10-2018 NJ56_03965 48978f360eb320f83dff725ce9f50966 654 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 28 653 0.0 T 15-10-2018 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 NJ56_08370 0bd9508dc8520bb39b89d0f1ba988d4f 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 9 101 1.6E-32 T 15-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 NJ56_08370 0bd9508dc8520bb39b89d0f1ba988d4f 101 Gene3D G3DSA:1.20.120.20 2 79 1.2E-5 T 15-10-2018 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.152 T 15-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 15-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 SUPERFAMILY SSF50615 10 94 9.22E-26 T 15-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 Gene3D G3DSA:2.40.30.20 1 93 1.0E-29 T 15-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 PIRSF PIRSF039088 1 513 5.9E-232 T 15-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 Gene3D G3DSA:3.40.50.300 94 382 3.0E-133 T 15-10-2018 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 2.7E-261 T 15-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 92 2.1E-13 T 15-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 SUPERFAMILY SSF52540 96 381 3.93E-96 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 5.1E-74 T 15-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 1.9E-45 T 15-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 SUPERFAMILY SSF47917 383 511 1.18E-45 T 15-10-2018 NJ56_06255 ac78ff49c4330a54367da98b5ec26544 513 Gene3D G3DSA:1.20.150.20 383 513 2.6E-50 T 15-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_14930 24cca590d02a533915771756a0df3381 230 SUPERFAMILY SSF53639 1 221 7.85E-67 T 15-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily NJ56_14930 24cca590d02a533915771756a0df3381 230 SMART SM01007 7 197 2.5E-66 T 15-10-2018 IPR001303 Class II aldolase/adducin N-terminal NJ56_14930 24cca590d02a533915771756a0df3381 230 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 197 1.4E-46 T 15-10-2018 IPR001303 Class II aldolase/adducin N-terminal NJ56_14930 24cca590d02a533915771756a0df3381 230 Gene3D G3DSA:3.40.225.10 1 229 7.5E-60 T 15-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily NJ56_06415 8be5a68332322df09e6fabbbbc7d3307 428 SUPERFAMILY SSF82171 23 425 3.81E-20 T 15-10-2018 NJ56_06415 8be5a68332322df09e6fabbbbc7d3307 428 Gene3D G3DSA:2.120.10.30 287 428 7.9E-22 T 15-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like NJ56_06415 8be5a68332322df09e6fabbbbc7d3307 428 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 343 424 4.1E-7 T 15-10-2018 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 NJ56_06415 8be5a68332322df09e6fabbbbc7d3307 428 Pfam PF12566 Protein of unknown function (DUF3748) 68 188 1.5E-58 T 15-10-2018 IPR022223 Protein of unknown function DUF3748 NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 167 228 1.0E-15 T 15-10-2018 IPR016148 Pili assembly chaperone, C-terminal NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 Gene3D G3DSA:2.60.40.10 147 240 1.7E-22 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 SUPERFAMILY SSF49584 151 240 2.62E-24 T 15-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 Gene3D G3DSA:2.60.40.10 23 141 2.9E-39 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 24 141 5.4E-37 T 15-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 99 116 - T 15-10-2018 IPR018046 Pili assembly chaperone, conserved site NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 PRINTS PR00969 Pili chaperone signature 24 33 1.7E-31 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 PRINTS PR00969 Pili chaperone signature 123 138 1.7E-31 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 PRINTS PR00969 Pili chaperone signature 70 91 1.7E-31 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 PRINTS PR00969 Pili chaperone signature 100 117 1.7E-31 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 PRINTS PR00969 Pili chaperone signature 162 177 1.7E-31 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_00970 7e0c2266811e9ece19fa33e54d6d645d 247 SUPERFAMILY SSF49354 24 141 9.42E-38 T 15-10-2018 IPR008962 PapD-like superfamily NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Gene3D G3DSA:2.40.50.140 6 97 6.7E-18 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Pfam PF00575 S1 RNA binding domain 275 347 2.7E-20 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Pfam PF00575 S1 RNA binding domain 20 86 4.6E-7 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Pfam PF00575 S1 RNA binding domain 103 171 7.9E-9 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Pfam PF00575 S1 RNA binding domain 190 260 2.4E-21 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Pfam PF00575 S1 RNA binding domain 449 520 4.3E-16 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Pfam PF00575 S1 RNA binding domain 361 434 3.3E-21 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 1.0E-235 T 15-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SUPERFAMILY SSF50249 1 112 1.09E-18 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SMART SM00316 19 87 6.6E-5 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SMART SM00316 275 347 2.2E-27 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SMART SM00316 362 434 1.8E-20 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SMART SM00316 103 171 3.7E-8 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SMART SM00316 449 520 2.0E-21 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SMART SM00316 190 260 2.8E-28 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Gene3D G3DSA:2.40.50.140 187 268 1.1E-27 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SUPERFAMILY SSF50249 103 185 1.09E-13 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 PIRSF PIRSF002111 1 534 3.7E-217 T 15-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SUPERFAMILY SSF50249 363 444 4.85E-20 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Gene3D G3DSA:2.40.50.140 269 357 4.3E-31 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Gene3D G3DSA:2.40.50.140 98 181 2.2E-6 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Gene3D G3DSA:2.40.50.140 358 443 1.7E-22 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SUPERFAMILY SSF50249 189 277 3.88E-27 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SUPERFAMILY SSF50249 255 371 8.24E-31 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 PRINTS PR00681 Ribosomal protein S1 signature 155 175 6.8E-99 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 PRINTS PR00681 Ribosomal protein S1 signature 330 348 6.8E-99 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 PRINTS PR00681 Ribosomal protein S1 signature 84 103 6.8E-99 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 PRINTS PR00681 Ribosomal protein S1 signature 126 143 6.8E-99 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 PRINTS PR00681 Ribosomal protein S1 signature 21 39 6.8E-99 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 PRINTS PR00681 Ribosomal protein S1 signature 39 53 6.8E-99 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 PRINTS PR00681 Ribosomal protein S1 signature 212 233 6.8E-99 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 PRINTS PR00681 Ribosomal protein S1 signature 290 309 6.8E-99 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 PRINTS PR00681 Ribosomal protein S1 signature 108 124 6.8E-99 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 Gene3D G3DSA:2.40.50.140 444 528 1.2E-20 T 15-10-2018 NJ56_16920 81c3f1a24382356505cca4e91b7317e7 557 SUPERFAMILY SSF50249 429 534 3.66E-22 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_01950 04827b8d873d5d9e9870c520246b9515 142 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 10 109 8.0E-4 T 15-10-2018 IPR020143 Uncharacterised protein family, RP436 NJ56_01950 04827b8d873d5d9e9870c520246b9515 142 Pfam PF09335 SNARE associated Golgi protein 26 133 3.7E-9 T 15-10-2018 IPR032816 SNARE associated Golgi protein NJ56_17465 ae8646028815177790e52239f6b9eeec 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 75 91 1.5E-11 T 15-10-2018 IPR002177 DNA-binding protein Dps NJ56_17465 ae8646028815177790e52239f6b9eeec 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 51 67 1.5E-11 T 15-10-2018 IPR002177 DNA-binding protein Dps NJ56_17465 ae8646028815177790e52239f6b9eeec 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 144 162 1.5E-11 T 15-10-2018 IPR002177 DNA-binding protein Dps NJ56_17465 ae8646028815177790e52239f6b9eeec 167 SUPERFAMILY SSF47240 10 167 5.75E-49 T 15-10-2018 IPR009078 Ferritin-like superfamily NJ56_17465 ae8646028815177790e52239f6b9eeec 167 Hamap MF_01441 DNA protection during starvation protein [dps]. 1 167 44.983 T 15-10-2018 IPR023067 DNA protection during starvation protein, gammaproteobacteria GO:0016722|GO:0055114 NJ56_17465 ae8646028815177790e52239f6b9eeec 167 Pfam PF00210 Ferritin-like domain 30 166 4.8E-22 T 15-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 NJ56_17465 ae8646028815177790e52239f6b9eeec 167 ProSitePatterns PS00818 Dps protein family signature 1. 51 67 - T 15-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 NJ56_17465 ae8646028815177790e52239f6b9eeec 167 Gene3D G3DSA:1.20.1260.10 1 167 1.4E-51 T 15-10-2018 IPR012347 Ferritin-like NJ56_17465 ae8646028815177790e52239f6b9eeec 167 PIRSF PIRSF005900 8 167 3.0E-41 T 15-10-2018 IPR002177 DNA-binding protein Dps NJ56_14900 711f3f5a6f58e3e693e0ec8573f4857c 463 Gene3D G3DSA:1.20.1740.10 1 452 1.8E-55 T 15-10-2018 NJ56_14900 711f3f5a6f58e3e693e0ec8573f4857c 463 Pfam PF13520 Amino acid permease 5 416 1.3E-71 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_14900 711f3f5a6f58e3e693e0ec8573f4857c 463 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 462 6.4E-169 T 15-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 NJ56_14900 711f3f5a6f58e3e693e0ec8573f4857c 463 PIRSF PIRSF006060 1 460 1.0E-46 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_03975 d7ca964ca5dfc92c6228e2aaa2a5501c 206 Gene3D G3DSA:3.10.50.40 70 206 8.4E-50 T 15-10-2018 NJ56_03975 d7ca964ca5dfc92c6228e2aaa2a5501c 206 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 5 108 3.8E-23 T 15-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 NJ56_03975 d7ca964ca5dfc92c6228e2aaa2a5501c 206 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 117 203 8.4E-27 T 15-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain NJ56_03975 d7ca964ca5dfc92c6228e2aaa2a5501c 206 SUPERFAMILY SSF54534 8 205 9.43E-55 T 15-10-2018 NJ56_03975 d7ca964ca5dfc92c6228e2aaa2a5501c 206 Gene3D G3DSA:1.10.287.460 5 69 1.3E-18 T 15-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 828 32.468 T 15-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 SUPERFAMILY SSF53706 40 705 9.55E-204 T 15-10-2018 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 Pfam PF01568 Molydopterin dinucleotide binding domain 714 822 4.0E-24 T 15-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 39 92 2.9E-17 T 15-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 Gene3D G3DSA:3.40.50.740 96 623 0.0 T 15-10-2018 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 Gene3D G3DSA:2.40.40.20 704 828 7.2E-49 T 15-10-2018 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 Gene3D G3DSA:3.30.200.210 39 666 0.0 T 15-10-2018 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 29 6.1E-5 T 15-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 44 61 - T 15-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 2 23 4.1E-6 T 15-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 Pfam PF00384 Molybdopterin oxidoreductase 96 568 6.8E-91 T 15-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 SMART SM00926 39 93 3.0E-15 T 15-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 828 0.0 T 15-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 Gene3D G3DSA:3.40.228.10 175 703 0.0 T 15-10-2018 NJ56_10980 28a132d82ec6d3fd17d854957036fd61 828 SUPERFAMILY SSF50692 688 828 6.78E-42 T 15-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 15-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 41.566 T 15-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 Pfam PF00318 Ribosomal protein S2 9 224 7.4E-94 T 15-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 PRINTS PR00395 Ribosomal protein S2 signature 37 46 1.9E-37 T 15-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 PRINTS PR00395 Ribosomal protein S2 signature 158 175 1.9E-37 T 15-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 PRINTS PR00395 Ribosomal protein S2 signature 87 104 1.9E-37 T 15-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 PRINTS PR00395 Ribosomal protein S2 signature 175 186 1.9E-37 T 15-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 PRINTS PR00395 Ribosomal protein S2 signature 6 24 1.9E-37 T 15-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 PRINTS PR00395 Ribosomal protein S2 signature 196 210 1.9E-37 T 15-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 SUPERFAMILY SSF52313 6 236 2.09E-96 T 15-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 Gene3D G3DSA:1.10.287.610 103 150 5.0E-93 T 15-10-2018 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 5.9E-108 T 15-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 Gene3D G3DSA:3.40.50.10490 8 219 5.0E-93 T 15-10-2018 NJ56_09685 09b02cfcf4a5aba91a0f17a51bb14a59 241 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 15-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 NJ56_06865 b963c4c1b36bd138a3a16e9dc963f021 438 Pfam PF02447 GntP family permease 1 437 5.3E-183 T 15-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 NJ56_06865 b963c4c1b36bd138a3a16e9dc963f021 438 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 1 438 3.8E-197 T 15-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 NJ56_06865 b963c4c1b36bd138a3a16e9dc963f021 438 PIRSF PIRSF002746 1 438 2.3E-160 T 15-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 NJ56_15695 8a48d29a5e6f66bd8253049019fe6600 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.7E-9 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_15695 8a48d29a5e6f66bd8253049019fe6600 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.7E-9 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_15695 8a48d29a5e6f66bd8253049019fe6600 239 Gene3D G3DSA:1.20.120.530 80 239 2.6E-43 T 15-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal NJ56_15695 8a48d29a5e6f66bd8253049019fe6600 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 5.3E-20 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_15695 8a48d29a5e6f66bd8253049019fe6600 239 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 239 162.665 T 15-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 NJ56_15695 8a48d29a5e6f66bd8253049019fe6600 239 SUPERFAMILY SSF46785 11 87 2.69E-17 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_15695 8a48d29a5e6f66bd8253049019fe6600 239 SMART SM00345 12 71 1.0E-22 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_15695 8a48d29a5e6f66bd8253049019fe6600 239 Gene3D G3DSA:1.10.10.10 1 79 6.4E-23 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_15695 8a48d29a5e6f66bd8253049019fe6600 239 SUPERFAMILY SSF48008 79 230 3.27E-65 T 15-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal NJ56_15695 8a48d29a5e6f66bd8253049019fe6600 239 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 236 1.1E-122 T 15-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 NJ56_15695 8a48d29a5e6f66bd8253049019fe6600 239 Pfam PF07840 FadR C-terminal domain 72 234 6.8E-74 T 15-10-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 NJ56_04415 9840d35ea6d84ce9edcae714e0f62ed8 366 Pfam PF12835 Integrase 172 319 1.7E-62 T 15-10-2018 IPR024456 Integrase catalytic domain, putative NJ56_04415 9840d35ea6d84ce9edcae714e0f62ed8 366 Pfam PF12834 Phage integrase, N-terminal 71 159 2.5E-35 T 15-10-2018 IPR024457 Putative integrase, N-terminal NJ56_04415 9840d35ea6d84ce9edcae714e0f62ed8 366 Gene3D G3DSA:1.10.150.130 73 169 3.6E-6 T 15-10-2018 IPR010998 Integrase/recombinase, N-terminal NJ56_04415 9840d35ea6d84ce9edcae714e0f62ed8 366 Gene3D G3DSA:1.10.443.10 183 364 6.0E-6 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_04415 9840d35ea6d84ce9edcae714e0f62ed8 366 SUPERFAMILY SSF56349 83 361 5.06E-15 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 1.6E-54 T 15-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 1.6E-54 T 15-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 1.6E-54 T 15-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 1.6E-54 T 15-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 1.6E-54 T 15-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 SUPERFAMILY SSF52954 529 636 1.25E-32 T 15-10-2018 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 1.3E-241 T 15-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 Gene3D G3DSA:3.30.930.10 223 531 2.6E-128 T 15-10-2018 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 SMART SM00863 170 219 2.6E-19 T 15-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 Gene3D G3DSA:3.30.54.20 130 187 4.2E-62 T 15-10-2018 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 SUPERFAMILY SSF55681 243 525 9.56E-97 T 15-10-2018 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 34.033 T 15-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 Pfam PF03129 Anticodon binding domain 541 629 7.4E-22 T 15-10-2018 IPR004154 Anticodon-binding NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 529 2.8E-50 T 15-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 Gene3D G3DSA:3.10.20.30 3 62 3.5E-21 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 Pfam PF02824 TGS domain 4 61 7.2E-11 T 15-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 SUPERFAMILY SSF81271 3 61 8.5E-16 T 15-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 Gene3D G3DSA:3.30.980.10 69 222 4.2E-62 T 15-10-2018 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 3.8E-14 T 15-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 SUPERFAMILY SSF55186 63 239 1.31E-63 T 15-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 NJ56_14245 5c777de2e1814bef1012fb3d98124253 642 Gene3D G3DSA:3.40.50.800 532 642 2.5E-32 T 15-10-2018 IPR036621 Anticodon-binding domain superfamily NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 SUPERFAMILY SSF53335 141 428 3.65E-78 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 SUPERFAMILY SSF48013 6 149 3.76E-35 T 15-10-2018 IPR035926 NusB-like superfamily NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 Gene3D G3DSA:3.40.50.150 231 429 2.0E-73 T 15-10-2018 NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 7.7E-31 T 15-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 411 428 7.7E-31 T 15-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 7.7E-31 T 15-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 7.7E-31 T 15-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 7.7E-31 T 15-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 316 327 - T 15-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 Gene3D G3DSA:3.30.70.1170 173 230 4.9E-26 T 15-10-2018 NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 Gene3D G3DSA:1.10.287.730 146 172 7.7E-15 T 15-10-2018 NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 Gene3D G3DSA:1.10.940.10 1 145 8.1E-48 T 15-10-2018 IPR035926 NusB-like superfamily NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 Pfam PF01189 16S rRNA methyltransferase RsmB/F 241 426 3.5E-77 T 15-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 Hamap MF_01856 Ribosomal RNA small subunit methyltransferase B [rsmB]. 1 429 69.257 T 15-10-2018 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae GO:0008649 NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 8 428 5.8E-175 T 15-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 NJ56_07520 f09c02cacd7770fb02583b44d82107a0 429 Pfam PF01029 NusB family 6 127 1.4E-23 T 15-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 NJ56_10405 a2dab41c897d239138e589952c735d29 217 TIGRFAM TIGR01545 YfhB_g-proteo: HAD hydrolase, family IF 11 217 2.4E-120 T 15-10-2018 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 NJ56_10405 a2dab41c897d239138e589952c735d29 217 SUPERFAMILY SSF56784 12 199 2.63E-8 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_10405 a2dab41c897d239138e589952c735d29 217 Gene3D G3DSA:1.20.1440.100 26 100 7.6E-14 T 15-10-2018 NJ56_10405 a2dab41c897d239138e589952c735d29 217 Gene3D G3DSA:3.40.50.1000 15 215 7.6E-14 T 15-10-2018 IPR023214 HAD superfamily NJ56_10405 a2dab41c897d239138e589952c735d29 217 Pfam PF12710 haloacid dehalogenase-like hydrolase 15 198 6.5E-14 T 15-10-2018 NJ56_01845 b13723269faae19378e609904004f18c 857 SUPERFAMILY SSF52540 546 852 1.39E-85 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01845 b13723269faae19378e609904004f18c 857 SUPERFAMILY SSF81923 4 156 7.65E-42 T 15-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 NJ56_01845 b13723269faae19378e609904004f18c 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 6.7E-57 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_01845 b13723269faae19378e609904004f18c 857 Gene3D G3DSA:1.10.1780.10 1 147 6.9E-36 T 15-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 NJ56_01845 b13723269faae19378e609904004f18c 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 15-10-2018 IPR028299 ClpA/B, conserved site 2 NJ56_01845 b13723269faae19378e609904004f18c 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 69 5.6E-15 T 15-10-2018 IPR004176 Clp, N-terminal NJ56_01845 b13723269faae19378e609904004f18c 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 3.6E-11 T 15-10-2018 IPR004176 Clp, N-terminal NJ56_01845 b13723269faae19378e609904004f18c 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 337 2.1E-13 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_01845 b13723269faae19378e609904004f18c 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 15-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 NJ56_01845 b13723269faae19378e609904004f18c 857 Gene3D G3DSA:3.40.50.300 550 764 8.6E-91 T 15-10-2018 NJ56_01845 b13723269faae19378e609904004f18c 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.6E-42 T 15-10-2018 IPR001270 ClpA/B family GO:0005524 NJ56_01845 b13723269faae19378e609904004f18c 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 1.6E-42 T 15-10-2018 IPR001270 ClpA/B family GO:0005524 NJ56_01845 b13723269faae19378e609904004f18c 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 1.6E-42 T 15-10-2018 IPR001270 ClpA/B family GO:0005524 NJ56_01845 b13723269faae19378e609904004f18c 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 1.6E-42 T 15-10-2018 IPR001270 ClpA/B family GO:0005524 NJ56_01845 b13723269faae19378e609904004f18c 857 Gene3D G3DSA:3.40.50.300 343 544 2.2E-70 T 15-10-2018 NJ56_01845 b13723269faae19378e609904004f18c 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 844 3.7E-26 T 15-10-2018 IPR019489 Clp ATPase, C-terminal NJ56_01845 b13723269faae19378e609904004f18c 857 Gene3D G3DSA:3.40.50.300 148 342 1.0E-73 T 15-10-2018 NJ56_01845 b13723269faae19378e609904004f18c 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 15-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 NJ56_01845 b13723269faae19378e609904004f18c 857 SMART SM01086 766 855 9.0E-38 T 15-10-2018 IPR019489 Clp ATPase, C-terminal NJ56_01845 b13723269faae19378e609904004f18c 857 SMART SM00382 198 344 6.8E-12 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_01845 b13723269faae19378e609904004f18c 857 SMART SM00382 597 739 4.8E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_01845 b13723269faae19378e609904004f18c 857 Gene3D G3DSA:1.10.8.60 766 857 9.1E-26 T 15-10-2018 NJ56_01845 b13723269faae19378e609904004f18c 857 SUPERFAMILY SSF52540 159 545 1.6E-99 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15280 7ac0298fb1d183a5f89d7cb9295b645b 196 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 3 21 1.2E-6 T 15-10-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17 NJ56_15280 7ac0298fb1d183a5f89d7cb9295b645b 196 PIRSF PIRSF015617 1 196 1.2E-65 T 15-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 NJ56_15280 7ac0298fb1d183a5f89d7cb9295b645b 196 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 24 196 9.3E-76 T 15-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 NJ56_15280 7ac0298fb1d183a5f89d7cb9295b645b 196 Gene3D G3DSA:3.40.50.300 6 196 8.7E-71 T 15-10-2018 NJ56_15280 7ac0298fb1d183a5f89d7cb9295b645b 196 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 28 196 4.1E-57 T 15-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 NJ56_15280 7ac0298fb1d183a5f89d7cb9295b645b 196 SUPERFAMILY SSF52540 7 196 1.73E-73 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01905 6c5ea3f8324fe4de6951058ab83f3e3c 118 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 15-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01905 6c5ea3f8324fe4de6951058ab83f3e3c 118 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 15-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01905 6c5ea3f8324fe4de6951058ab83f3e3c 118 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 15-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01905 6c5ea3f8324fe4de6951058ab83f3e3c 118 Pfam PF01245 Ribosomal protein L19 3 113 1.3E-49 T 15-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01905 6c5ea3f8324fe4de6951058ab83f3e3c 118 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 15-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_01905 6c5ea3f8324fe4de6951058ab83f3e3c 118 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 3.1E-52 T 15-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01905 6c5ea3f8324fe4de6951058ab83f3e3c 118 PIRSF PIRSF002191 1 118 6.2E-50 T 15-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01905 6c5ea3f8324fe4de6951058ab83f3e3c 118 SUPERFAMILY SSF50104 2 116 1.4E-47 T 15-10-2018 IPR008991 Translation protein SH3-like domain superfamily NJ56_01905 6c5ea3f8324fe4de6951058ab83f3e3c 118 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.023 T 15-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01905 6c5ea3f8324fe4de6951058ab83f3e3c 118 Gene3D G3DSA:2.30.30.790 2 118 2.3E-16 T 15-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_11110 0208957f55ee446b65bd5da4f6856f22 496 SUPERFAMILY SSF103473 17 463 3.23E-64 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_11110 0208957f55ee446b65bd5da4f6856f22 496 Gene3D G3DSA:1.20.1250.20 276 459 6.7E-21 T 15-10-2018 NJ56_11110 0208957f55ee446b65bd5da4f6856f22 496 Hamap MF_01238 Sialic acid transporter NanT [nanT]. 1 496 49.159 T 15-10-2018 IPR004742 Sialic acid transporter GO:0015136|GO:0015739|GO:0016021 NJ56_11110 0208957f55ee446b65bd5da4f6856f22 496 Gene3D G3DSA:1.20.1250.20 15 225 6.3E-42 T 15-10-2018 NJ56_11110 0208957f55ee446b65bd5da4f6856f22 496 Pfam PF07690 Major Facilitator Superfamily 25 293 3.1E-28 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_14525 2ccc92a2c474939770abdddeee7b50c2 303 Gene3D G3DSA:3.40.190.10 168 264 1.1E-14 T 15-10-2018 NJ56_14525 2ccc92a2c474939770abdddeee7b50c2 303 SUPERFAMILY SSF53850 89 291 3.72E-29 T 15-10-2018 NJ56_14525 2ccc92a2c474939770abdddeee7b50c2 303 Pfam PF03466 LysR substrate binding domain 88 290 1.7E-24 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_14525 2ccc92a2c474939770abdddeee7b50c2 303 SUPERFAMILY SSF46785 6 88 4.09E-19 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_14525 2ccc92a2c474939770abdddeee7b50c2 303 Gene3D G3DSA:3.40.190.10 108 286 1.1E-14 T 15-10-2018 NJ56_14525 2ccc92a2c474939770abdddeee7b50c2 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 6.1E-20 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_14525 2ccc92a2c474939770abdddeee7b50c2 303 Gene3D G3DSA:1.10.10.10 3 89 1.4E-22 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_09735 e2bb6e26cd806afa04a8d45ce1b16e50 340 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 88 3.8E-24 T 15-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 NJ56_09735 e2bb6e26cd806afa04a8d45ce1b16e50 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 225 253 - T 15-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 NJ56_09735 e2bb6e26cd806afa04a8d45ce1b16e50 340 Gene3D G3DSA:3.40.1390.10 1 99 3.6E-37 T 15-10-2018 NJ56_09735 e2bb6e26cd806afa04a8d45ce1b16e50 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 130 158 - T 15-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 NJ56_09735 e2bb6e26cd806afa04a8d45ce1b16e50 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 5.5E-9 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_09735 e2bb6e26cd806afa04a8d45ce1b16e50 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 256 3.2E-8 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_09735 e2bb6e26cd806afa04a8d45ce1b16e50 340 Gene3D G3DSA:2.160.10.10 100 309 4.8E-67 T 15-10-2018 NJ56_09735 e2bb6e26cd806afa04a8d45ce1b16e50 340 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 326 35.594 T 15-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 NJ56_09735 e2bb6e26cd806afa04a8d45ce1b16e50 340 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 2.5E-123 T 15-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 NJ56_09735 e2bb6e26cd806afa04a8d45ce1b16e50 340 SUPERFAMILY SSF51161 33 316 3.96E-86 T 15-10-2018 IPR011004 Trimeric LpxA-like superfamily NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 Pfam PF00579 tRNA synthetases class I (W and Y) 31 328 3.6E-90 T 15-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 188 210 3.5E-32 T 15-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 3.5E-32 T 15-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 167 182 3.5E-32 T 15-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 221 233 3.5E-32 T 15-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 SMART SM00363 357 419 5.4E-6 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 Pfam PF01479 S4 domain 359 398 9.1E-8 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 4 423 45.816 T 15-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 423 1.1E-142 T 15-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 Gene3D G3DSA:3.40.50.620 1 227 1.7E-94 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 SUPERFAMILY SSF52374 4 328 7.24E-107 T 15-10-2018 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 Gene3D G3DSA:1.10.240.10 228 329 3.7E-35 T 15-10-2018 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 Gene3D G3DSA:3.10.290.10 330 424 2.8E-27 T 15-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 15-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_14615 5b45f042f85cbc7a348fec07208d8628 424 SUPERFAMILY SSF55174 327 423 2.22E-20 T 15-10-2018 NJ56_15315 40fa3f17d7abbf212aa6cf5d72387d10 455 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 256 455 31.662 T 15-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 NJ56_15315 40fa3f17d7abbf212aa6cf5d72387d10 455 Gene3D G3DSA:3.20.20.70 9 256 1.9E-181 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_15315 40fa3f17d7abbf212aa6cf5d72387d10 455 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 4 255 34.965 T 15-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 NJ56_15315 40fa3f17d7abbf212aa6cf5d72387d10 455 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 51 69 - T 15-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 NJ56_15315 40fa3f17d7abbf212aa6cf5d72387d10 455 Gene3D G3DSA:3.20.20.70 257 449 1.9E-181 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_15315 40fa3f17d7abbf212aa6cf5d72387d10 455 SUPERFAMILY SSF51366 13 254 3.65E-81 T 15-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 NJ56_15315 40fa3f17d7abbf212aa6cf5d72387d10 455 SUPERFAMILY SSF51366 258 453 9.26E-56 T 15-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 NJ56_15315 40fa3f17d7abbf212aa6cf5d72387d10 455 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 258 450 1.2E-53 T 15-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 NJ56_15315 40fa3f17d7abbf212aa6cf5d72387d10 455 Pfam PF00218 Indole-3-glycerol phosphate synthase 6 252 4.7E-97 T 15-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 NJ56_04975 934e7272519d0d4d243b175c0cdc13a6 758 SUPERFAMILY SSF51726 394 756 7.46E-120 T 15-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 NJ56_04975 934e7272519d0d4d243b175c0cdc13a6 758 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 3 756 37.566 T 15-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 NJ56_04975 934e7272519d0d4d243b175c0cdc13a6 758 PIRSF PIRSF000382 2 758 0.0 T 15-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 NJ56_04975 934e7272519d0d4d243b175c0cdc13a6 758 Gene3D G3DSA:3.20.20.210 7 522 0.0 T 15-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 NJ56_04975 934e7272519d0d4d243b175c0cdc13a6 758 Gene3D G3DSA:3.20.20.210 387 754 0.0 T 15-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 NJ56_04975 934e7272519d0d4d243b175c0cdc13a6 758 SUPERFAMILY SSF51726 5 392 2.88E-113 T 15-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 NJ56_04975 934e7272519d0d4d243b175c0cdc13a6 758 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 5 313 1.0E-126 T 15-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 NJ56_04975 934e7272519d0d4d243b175c0cdc13a6 758 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 8 756 0.0 T 15-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 NJ56_04975 934e7272519d0d4d243b175c0cdc13a6 758 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 429 751 2.3E-159 T 15-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 NJ56_01180 87e9c5e0c68c0f18d7690d3b2da9df20 201 Pfam PF02132 RecR protein 41 77 1.0E-14 T 15-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger NJ56_01180 87e9c5e0c68c0f18d7690d3b2da9df20 201 SMART SM00493 81 166 7.3E-18 T 15-10-2018 IPR006171 TOPRIM domain NJ56_01180 87e9c5e0c68c0f18d7690d3b2da9df20 201 SUPERFAMILY SSF111304 2 199 8.63E-71 T 15-10-2018 IPR023627 Recombination protein RecR NJ56_01180 87e9c5e0c68c0f18d7690d3b2da9df20 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 102.649 T 15-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 NJ56_01180 87e9c5e0c68c0f18d7690d3b2da9df20 201 Pfam PF13662 Toprim domain 82 172 2.5E-21 T 15-10-2018 IPR006171 TOPRIM domain NJ56_01180 87e9c5e0c68c0f18d7690d3b2da9df20 201 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 15-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 NJ56_01180 87e9c5e0c68c0f18d7690d3b2da9df20 201 TIGRFAM TIGR00615 recR: recombination protein RecR 2 197 4.9E-80 T 15-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 NJ56_01180 87e9c5e0c68c0f18d7690d3b2da9df20 201 Gene3D G3DSA:1.10.8.420 1 53 5.5E-20 T 15-10-2018 NJ56_01180 87e9c5e0c68c0f18d7690d3b2da9df20 201 Gene3D G3DSA:3.40.1360.10 77 198 1.7E-38 T 15-10-2018 NJ56_12670 c73b1455cf03ab3803a3c15833da0cdb 288 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 2 269 2.1E-104 T 15-10-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 NJ56_12670 c73b1455cf03ab3803a3c15833da0cdb 288 Gene3D G3DSA:1.10.4200.10 153 271 1.3E-5 T 15-10-2018 NJ56_12670 c73b1455cf03ab3803a3c15833da0cdb 288 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 1 288 179.689 T 15-10-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 NJ56_12670 c73b1455cf03ab3803a3c15833da0cdb 288 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 2 267 9.9E-84 T 15-10-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 NJ56_17150 79bbc296c05f89f73b591f5df5ec1c39 161 Pfam PF10722 Putative bacterial sensory transduction regulator 9 130 3.3E-14 T 15-10-2018 IPR019660 Putative sensory transduction regulator YbjN NJ56_05445 cd97cad50bb464daba5ffb0a16edbd58 514 SUPERFAMILY SSF55021 336 423 2.2E-27 T 15-10-2018 NJ56_05445 cd97cad50bb464daba5ffb0a16edbd58 514 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 15 512 2.0E-260 T 15-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 NJ56_05445 cd97cad50bb464daba5ffb0a16edbd58 514 Gene3D G3DSA:3.40.50.1100 25 327 3.3E-129 T 15-10-2018 NJ56_05445 cd97cad50bb464daba5ffb0a16edbd58 514 Gene3D G3DSA:3.40.50.1100 61 157 3.3E-129 T 15-10-2018 NJ56_05445 cd97cad50bb464daba5ffb0a16edbd58 514 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 53 66 - T 15-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 NJ56_05445 cd97cad50bb464daba5ffb0a16edbd58 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 419 1.9E-28 T 15-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 NJ56_05445 cd97cad50bb464daba5ffb0a16edbd58 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 425 512 7.5E-26 T 15-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 NJ56_05445 cd97cad50bb464daba5ffb0a16edbd58 514 SUPERFAMILY SSF55021 420 512 5.49E-25 T 15-10-2018 NJ56_05445 cd97cad50bb464daba5ffb0a16edbd58 514 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 30 316 1.0E-76 T 15-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme NJ56_05445 cd97cad50bb464daba5ffb0a16edbd58 514 SUPERFAMILY SSF53686 14 365 2.23E-99 T 15-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NJ56_05445 cd97cad50bb464daba5ffb0a16edbd58 514 Gene3D G3DSA:3.40.1020.10 338 514 1.4E-72 T 15-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 NJ56_04085 12a66adecdcfda57dd317bf369bd2ddd 334 TIGRFAM TIGR01932 hflC: HflC protein 1 325 3.2E-138 T 15-10-2018 IPR010200 HflC GO:0016021|GO:0052547 NJ56_04085 12a66adecdcfda57dd317bf369bd2ddd 334 SUPERFAMILY SSF117892 194 231 8.24E-8 T 15-10-2018 IPR036013 Band 7/SPFH domain superfamily NJ56_04085 12a66adecdcfda57dd317bf369bd2ddd 334 Gene3D G3DSA:3.30.479.30 53 231 3.0E-16 T 15-10-2018 NJ56_04085 12a66adecdcfda57dd317bf369bd2ddd 334 PIRSF PIRSF005651 1 334 1.0E-106 T 15-10-2018 IPR010200 HflC GO:0016021|GO:0052547 NJ56_04085 12a66adecdcfda57dd317bf369bd2ddd 334 SUPERFAMILY SSF117892 56 157 1.83E-16 T 15-10-2018 IPR036013 Band 7/SPFH domain superfamily NJ56_04085 12a66adecdcfda57dd317bf369bd2ddd 334 Pfam PF01145 SPFH domain / Band 7 family 22 241 3.5E-33 T 15-10-2018 IPR001107 Band 7 domain NJ56_04085 12a66adecdcfda57dd317bf369bd2ddd 334 SMART SM00244 18 225 1.1E-41 T 15-10-2018 IPR001107 Band 7 domain NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 350 364 - T 15-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 5 103 9.3E-27 T 15-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 TIGRFAM TIGR04301 ODC_inducible: ornithine decarboxylase SpeF 1 719 0.0 T 15-10-2018 IPR027568 Ornithine decarboxylase SpeF GO:0004586 KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 SUPERFAMILY SSF52172 1 108 6.46E-35 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 SUPERFAMILY SSF53383 109 566 4.75E-121 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 Gene3D G3DSA:3.90.1150.10 421 600 1.4E-67 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 Gene3D G3DSA:3.40.640.10 109 420 5.2E-85 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 Gene3D G3DSA:3.90.100.10 601 720 6.0E-42 T 15-10-2018 NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 109 549 1.4E-196 T 15-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 SUPERFAMILY SSF55904 572 719 6.41E-45 T 15-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 576 704 3.2E-45 T 15-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 PIRSF PIRSF009393 1 720 7.0E-292 T 15-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 NJ56_03700 9b7db8e174cdeded2c8c571aa21cb110 720 Gene3D G3DSA:3.40.50.220 1 108 6.9E-24 T 15-10-2018 IPR027464 Ornithine decarboxylase, N-terminal KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 PIRSF PIRSF000349 1 208 5.6E-79 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 169 176 - T 15-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 SUPERFAMILY SSF46609 1 89 1.83E-35 T 15-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 3.7E-27 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 3.7E-27 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 3.7E-27 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 PRINTS PR01703 Manganese superoxide dismutase signature 167 179 3.7E-27 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 3.7E-27 T 15-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 Gene3D G3DSA:1.10.287.990 20 90 1.4E-30 T 15-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 SUPERFAMILY SSF54719 95 206 4.58E-45 T 15-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 202 5.7E-41 T 15-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 89 2.9E-31 T 15-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_06545 0144060b6e2883c7f16f50a5d34fc026 208 Gene3D G3DSA:2.40.500.20 94 208 2.3E-49 T 15-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 Hamap MF_00953 DNA topoisomerase 3 [topB]. 2 640 66.079 T 15-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 Gene3D G3DSA:3.40.50.140 2 157 6.1E-64 T 15-10-2018 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 SMART SM00436 129 224 1.6E-36 T 15-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 Gene3D G3DSA:1.10.290.10 290 417 3.3E-175 T 15-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 Pfam PF01131 DNA topoisomerase 159 594 3.8E-113 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 TIGRFAM TIGR01056 topB: DNA topoisomerase III 2 624 8.9E-278 T 15-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 318 333 - T 15-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 SUPERFAMILY SSF56712 2 609 1.7E-189 T 15-10-2018 IPR023405 DNA topoisomerase, type IA, core domain NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 Gene3D G3DSA:2.70.20.10 218 489 3.3E-175 T 15-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 Gene3D G3DSA:1.10.460.10 163 603 3.3E-175 T 15-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 Pfam PF01751 Toprim domain 3 135 1.1E-17 T 15-10-2018 IPR006171 TOPRIM domain NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 SMART SM00493 2 125 2.2E-32 T 15-10-2018 IPR006171 TOPRIM domain NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 194 212 6.1E-25 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 403 419 6.1E-25 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 99 112 6.1E-25 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 522 536 6.1E-25 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 324 333 6.1E-25 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15570 518fcf9f5362b89099f63265cc7301ba 640 SMART SM00437 281 559 1.2E-105 T 15-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 Gene3D G3DSA:3.30.70.100 178 241 8.9E-20 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 Gene3D G3DSA:3.30.70.100 71 132 1.4E-12 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 SUPERFAMILY SSF81665 363 862 3.01E-10 T 15-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 Pfam PF00403 Heavy-metal-associated domain 8 62 7.7E-10 T 15-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 Pfam PF00403 Heavy-metal-associated domain 184 236 1.6E-14 T 15-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 Pfam PF00403 Heavy-metal-associated domain 73 128 2.0E-7 T 15-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 SUPERFAMILY SSF55008 175 243 2.62E-18 T 15-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 ProSitePatterns PS01047 Heavy-metal-associated domain. 182 211 - T 15-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 368 872 3.0E-83 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 446 460 1.5E-25 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 818 830 1.5E-25 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 720 731 1.5E-25 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 598 612 1.5E-25 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 742 752 1.5E-25 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 795 814 1.5E-25 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 329 904 1.9E-181 T 15-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 SUPERFAMILY SSF56784 596 901 2.65E-62 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 Gene3D G3DSA:3.40.1110.10 609 727 1.9E-92 T 15-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 Gene3D G3DSA:2.70.150.20 389 501 6.4E-33 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 Pfam PF00702 haloacid dehalogenase-like hydrolase 595 809 4.2E-50 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 Gene3D G3DSA:3.40.50.1000 579 847 1.9E-92 T 15-10-2018 IPR023214 HAD superfamily NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 Pfam PF00122 E1-E2 ATPase 397 577 6.0E-50 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 Gene3D G3DSA:3.30.70.100 6 65 5.3E-13 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 SUPERFAMILY SSF55008 71 133 1.44E-11 T 15-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 600 606 - T 15-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 15-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 SUPERFAMILY SSF55008 3 65 3.93E-13 T 15-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 PRINTS PR00943 Copper-transporting ATPase signature 519 533 1.8E-8 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 PRINTS PR00943 Copper-transporting ATPase signature 386 404 1.8E-8 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 PRINTS PR00943 Copper-transporting ATPase signature 314 333 1.8E-8 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 PRINTS PR00943 Copper-transporting ATPase signature 581 596 1.8E-8 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 PRINTS PR00943 Copper-transporting ATPase signature 772 789 1.8E-8 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 310 904 1.0E-186 T 15-10-2018 NJ56_01060 b973407053962e3a8d1a2b546801abe7 911 SUPERFAMILY SSF81653 399 496 7.59E-25 T 15-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 NJ56_07270 9e1efd4db8d6670b14f37f323efa1ae9 633 SUPERFAMILY SSF52540 2 255 1.54E-45 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_07270 9e1efd4db8d6670b14f37f323efa1ae9 633 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_07270 9e1efd4db8d6670b14f37f323efa1ae9 633 Pfam PF00005 ABC transporter 17 178 1.5E-22 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_07270 9e1efd4db8d6670b14f37f323efa1ae9 633 SMART SM00382 26 223 1.3E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_07270 9e1efd4db8d6670b14f37f323efa1ae9 633 SMART SM00382 337 506 5.1E-14 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_07270 9e1efd4db8d6670b14f37f323efa1ae9 633 Gene3D G3DSA:3.40.50.300 275 541 6.8E-59 T 15-10-2018 NJ56_07270 9e1efd4db8d6670b14f37f323efa1ae9 633 SUPERFAMILY SSF52540 294 517 5.33E-48 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_07270 9e1efd4db8d6670b14f37f323efa1ae9 633 Pfam PF00005 ABC transporter 328 459 2.9E-26 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_07270 9e1efd4db8d6670b14f37f323efa1ae9 633 Gene3D G3DSA:3.40.50.300 6 274 8.3E-59 T 15-10-2018 NJ56_07270 9e1efd4db8d6670b14f37f323efa1ae9 633 Pfam PF12848 ABC transporter 217 298 1.5E-28 T 15-10-2018 IPR032781 ABC-transporter extension domain NJ56_07270 9e1efd4db8d6670b14f37f323efa1ae9 633 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 SUPERFAMILY SSF53850 35 257 1.35E-25 T 15-10-2018 NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 420 536 7.9E-18 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 SMART SM00387 419 539 9.3E-23 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 Gene3D G3DSA:3.30.565.10 372 540 1.6E-32 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 473 2.0E-10 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 536 2.0E-10 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 PRINTS PR00344 Bacterial sensor protein C-terminal signature 499 517 2.0E-10 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 SMART SM00062 41 260 0.0033 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 SUPERFAMILY SSF55874 363 540 6.81E-35 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 Gene3D G3DSA:3.40.190.10 127 220 4.2E-44 T 15-10-2018 NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 SUPERFAMILY SSF52172 659 781 3.13E-20 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 SUPERFAMILY SSF47384 293 371 1.96E-6 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 Pfam PF00072 Response regulator receiver domain 664 771 5.0E-15 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 Gene3D G3DSA:3.40.190.10 32 257 4.2E-44 T 15-10-2018 NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 258 9.8E-13 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 SMART SM00448 661 776 4.8E-8 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 Gene3D G3DSA:3.40.50.2300 647 778 2.3E-20 T 15-10-2018 NJ56_02270 6cb15b78795dc90094bf218528d1a9f4 785 Gene3D G3DSA:1.10.287.130 286 369 6.3E-6 T 15-10-2018 NJ56_16055 b6d05f0c63542c83b8f409c0ff97999b 196 Gene3D G3DSA:3.40.50.1470 1 195 1.7E-73 T 15-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 NJ56_16055 b6d05f0c63542c83b8f409c0ff97999b 196 Pfam PF01195 Peptidyl-tRNA hydrolase 6 189 2.4E-54 T 15-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 NJ56_16055 b6d05f0c63542c83b8f409c0ff97999b 196 SUPERFAMILY SSF53178 4 193 6.28E-69 T 15-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 NJ56_16055 b6d05f0c63542c83b8f409c0ff97999b 196 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 15-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 NJ56_16055 b6d05f0c63542c83b8f409c0ff97999b 196 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 183 35.81 T 15-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 NJ56_16055 b6d05f0c63542c83b8f409c0ff97999b 196 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 15-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 NJ56_16055 b6d05f0c63542c83b8f409c0ff97999b 196 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 4 191 1.5E-69 T 15-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 NJ56_01725 5b281edbe26e5662de36a691d275e9ca 340 PIRSF PIRSF006268 2 337 4.9E-91 T 15-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 NJ56_01725 5b281edbe26e5662de36a691d275e9ca 340 Gene3D G3DSA:3.10.520.20 22 339 4.4E-114 T 15-10-2018 NJ56_01725 5b281edbe26e5662de36a691d275e9ca 340 Pfam PF02424 ApbE family 33 309 6.2E-86 T 15-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 NJ56_01725 5b281edbe26e5662de36a691d275e9ca 340 SUPERFAMILY SSF143631 26 336 3.66E-101 T 15-10-2018 IPR003374 ApbE-like superfamily NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 SUPERFAMILY SSF51998 166 689 1.25E-184 T 15-10-2018 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 94 687 1.0E-159 T 15-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 Gene3D G3DSA:3.20.70.20 151 686 1.8E-199 T 15-10-2018 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 SUPERFAMILY SSF48168 6 165 8.24E-60 T 15-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 90 162 3.0E-12 T 15-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 Gene3D G3DSA:1.10.1650.20 285 337 1.8E-199 T 15-10-2018 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 Pfam PF02867 Ribonucleotide reductase, barrel domain 167 684 8.4E-141 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 557 579 - T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 PRINTS PR01183 Ribonucleotide reductase large chain signature 373 384 1.1E-33 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 PRINTS PR01183 Ribonucleotide reductase large chain signature 484 507 1.1E-33 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 PRINTS PR01183 Ribonucleotide reductase large chain signature 242 261 1.1E-33 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 PRINTS PR01183 Ribonucleotide reductase large chain signature 568 595 1.1E-33 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 PRINTS PR01183 Ribonucleotide reductase large chain signature 456 478 1.1E-33 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 PRINTS PR01183 Ribonucleotide reductase large chain signature 417 440 1.1E-33 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 Pfam PF08343 Ribonucleotide reductase N-terminal 7 88 3.3E-33 T 15-10-2018 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_09960 55ad26e008ea0e42a70c98c0b92c05d6 705 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 6 705 0.0 T 15-10-2018 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_02555 cfe2d448ffbd36f26043d3321da45167 287 TIGRFAM TIGR00417 speE: spermidine synthase 7 278 2.8E-117 T 15-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 NJ56_02555 cfe2d448ffbd36f26043d3321da45167 287 SUPERFAMILY SSF53335 6 283 1.67E-89 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_02555 cfe2d448ffbd36f26043d3321da45167 287 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 81 94 - T 15-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 NJ56_02555 cfe2d448ffbd36f26043d3321da45167 287 Gene3D G3DSA:2.30.140.10 1 54 1.4E-26 T 15-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 NJ56_02555 cfe2d448ffbd36f26043d3321da45167 287 Pfam PF17284 Spermidine synthase tetramerisation domain 6 57 6.2E-18 T 15-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 NJ56_02555 cfe2d448ffbd36f26043d3321da45167 287 Gene3D G3DSA:3.40.50.150 55 286 1.8E-81 T 15-10-2018 NJ56_02555 cfe2d448ffbd36f26043d3321da45167 287 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 284 39.406 T 15-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 NJ56_02555 cfe2d448ffbd36f26043d3321da45167 287 Pfam PF01564 Spermine/spermidine synthase domain 60 240 3.6E-67 T 15-10-2018 NJ56_09730 1b6c2321269b6f12c7f939a02848f3ad 165 Gene3D G3DSA:3.30.910.20 21 165 6.8E-49 T 15-10-2018 IPR024930 Skp domain superfamily NJ56_09730 1b6c2321269b6f12c7f939a02848f3ad 165 Pfam PF03938 Outer membrane protein (OmpH-like) 10 163 5.2E-37 T 15-10-2018 IPR005632 Chaperone protein Skp GO:0051082 NJ56_09730 1b6c2321269b6f12c7f939a02848f3ad 165 SMART SM00935 12 165 4.0E-56 T 15-10-2018 IPR005632 Chaperone protein Skp GO:0051082 NJ56_09730 1b6c2321269b6f12c7f939a02848f3ad 165 PIRSF PIRSF002094 1 165 8.3E-63 T 15-10-2018 IPR005632 Chaperone protein Skp GO:0051082 NJ56_09730 1b6c2321269b6f12c7f939a02848f3ad 165 SUPERFAMILY SSF111384 22 164 3.01E-39 T 15-10-2018 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 SUPERFAMILY SSF143243 24 228 4.58E-60 T 15-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 210 598 41.858 T 15-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 214 598 1.2E-174 T 15-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 SUPERFAMILY SSF56762 224 598 1.7E-120 T 15-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 24 184 25.004 T 15-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 49 176 3.1E-42 T 15-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 104 159 6.0E-26 T 15-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 Gene3D G3DSA:1.10.645.20 213 598 8.6E-143 T 15-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 Gene3D G3DSA:3.30.460.80 6 156 1.2E-35 T 15-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 15 598 72.229 T 15-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 48 175 1.4E-45 T 15-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 251 262 - T 15-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11680 381648f9dd63b1de5a37475a31faeae1 598 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 328 598 6.2E-104 T 15-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_06705 4e7983d59961c7d284da8fa775c97f2f 62 TIGRFAM TIGR03493 cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT 1 61 5.1E-16 T 15-10-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT NJ56_06705 4e7983d59961c7d284da8fa775c97f2f 62 ProDom PD053231 YHJT MEMBRANE INNER BCSF 1 62 2.0E-4 T 15-10-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT NJ56_06705 4e7983d59961c7d284da8fa775c97f2f 62 Pfam PF11120 Cellulose biosynthesis protein BcsF 1 57 3.6E-25 T 15-10-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT NJ56_02640 9ef10503022cac6b4832818fe266d497 398 PRINTS PR00812 Bacterial general secretion pathway protein F signature 59 71 9.1E-14 T 15-10-2018 IPR003004 GspF/PilC family NJ56_02640 9ef10503022cac6b4832818fe266d497 398 PRINTS PR00812 Bacterial general secretion pathway protein F signature 378 397 9.1E-14 T 15-10-2018 IPR003004 GspF/PilC family NJ56_02640 9ef10503022cac6b4832818fe266d497 398 PRINTS PR00812 Bacterial general secretion pathway protein F signature 158 186 9.1E-14 T 15-10-2018 IPR003004 GspF/PilC family NJ56_02640 9ef10503022cac6b4832818fe266d497 398 PRINTS PR00812 Bacterial general secretion pathway protein F signature 362 376 9.1E-14 T 15-10-2018 IPR003004 GspF/PilC family NJ56_02640 9ef10503022cac6b4832818fe266d497 398 Pfam PF00482 Type II secretion system (T2SS), protein F 63 186 2.8E-27 T 15-10-2018 IPR018076 Type II secretion system F domain NJ56_02640 9ef10503022cac6b4832818fe266d497 398 Pfam PF00482 Type II secretion system (T2SS), protein F 268 389 7.6E-29 T 15-10-2018 IPR018076 Type II secretion system F domain NJ56_02640 9ef10503022cac6b4832818fe266d497 398 Gene3D G3DSA:1.20.81.30 250 360 8.5E-25 T 15-10-2018 NJ56_02640 9ef10503022cac6b4832818fe266d497 398 Gene3D G3DSA:1.20.81.30 54 164 4.1E-27 T 15-10-2018 NJ56_08985 00d13d068f6cb3e515364ef5c0c4ee22 764 Pfam PF01228 Glycine radical 634 745 4.6E-41 T 15-10-2018 IPR001150 Glycine radical domain GO:0003824 NJ56_08985 00d13d068f6cb3e515364ef5c0c4ee22 764 SUPERFAMILY SSF51998 10 763 2.06E-276 T 15-10-2018 NJ56_08985 00d13d068f6cb3e515364ef5c0c4ee22 764 PIRSF PIRSF000379 12 764 0.0 T 15-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 NJ56_08985 00d13d068f6cb3e515364ef5c0c4ee22 764 Pfam PF02901 Pyruvate formate lyase-like 27 618 2.1E-193 T 15-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 NJ56_08985 00d13d068f6cb3e515364ef5c0c4ee22 764 Gene3D G3DSA:3.20.70.20 6 764 0.0 T 15-10-2018 NJ56_08985 00d13d068f6cb3e515364ef5c0c4ee22 764 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 15 764 0.0 T 15-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 NJ56_08985 00d13d068f6cb3e515364ef5c0c4ee22 764 ProSitePatterns PS00850 Glycine radical domain signature. 734 742 - T 15-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site NJ56_01240 3c265271110bb455a0201d6f89d9bc8b 1107 Gene3D G3DSA:2.30.30.60 929 978 3.5E-13 T 15-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily NJ56_01240 3c265271110bb455a0201d6f89d9bc8b 1107 Gene3D G3DSA:3.30.70.100 982 1075 5.3E-21 T 15-10-2018 NJ56_01240 3c265271110bb455a0201d6f89d9bc8b 1107 SUPERFAMILY SSF82689 981 1081 5.75E-26 T 15-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 NJ56_01240 3c265271110bb455a0201d6f89d9bc8b 1107 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 492 810 3.5E-103 T 15-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 NJ56_01240 3c265271110bb455a0201d6f89d9bc8b 1107 SUPERFAMILY SSF82861 829 912 5.62E-7 T 15-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 NJ56_01240 3c265271110bb455a0201d6f89d9bc8b 1107 Pfam PF12795 Mechanosensitive ion channel porin domain 34 272 1.2E-65 T 15-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain NJ56_01240 3c265271110bb455a0201d6f89d9bc8b 1107 Pfam PF00924 Mechanosensitive ion channel 871 1070 5.6E-59 T 15-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 NJ56_01240 3c265271110bb455a0201d6f89d9bc8b 1107 SUPERFAMILY SSF50182 914 979 6.54E-17 T 15-10-2018 IPR010920 LSM domain superfamily NJ56_01240 3c265271110bb455a0201d6f89d9bc8b 1107 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 943 977 - T 15-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 Gene3D G3DSA:3.10.310.40 763 871 5.5E-36 T 15-10-2018 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 SUPERFAMILY SSF55681 4 254 4.22E-109 T 15-10-2018 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 853 0.0 T 15-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 235 248 2.1E-33 T 15-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 2.1E-33 T 15-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 281 297 2.1E-33 T 15-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 208 219 2.1E-33 T 15-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 305 318 2.1E-33 T 15-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 SUPERFAMILY SSF101353 255 464 2.35E-61 T 15-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 652 695 7.1E-16 T 15-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 Pfam PF02272 DHHA1 domain 734 870 6.2E-30 T 15-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 SUPERFAMILY SSF50447 454 551 1.55E-18 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 874 205.759 T 15-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 SMART SM00863 652 695 3.8E-19 T 15-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 Gene3D G3DSA:3.30.980.10 562 696 2.3E-51 T 15-10-2018 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 SUPERFAMILY SSF55186 551 710 5.36E-52 T 15-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 Gene3D G3DSA:3.30.930.10 2 251 6.9E-123 T 15-10-2018 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 Pfam PF01411 tRNA synthetases class II (A) 7 554 1.3E-234 T 15-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 Gene3D G3DSA:2.40.30.130 461 551 2.7E-9 T 15-10-2018 NJ56_01985 f68f215428393d4ff6ea315172638f7e 874 Gene3D G3DSA:3.30.54.20 623 676 2.3E-51 T 15-10-2018 NJ56_10330 b62813508f8dfc89d3728727dde2996e 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 183 2.5E-30 T 15-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 NJ56_10330 b62813508f8dfc89d3728727dde2996e 191 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 189 1.7E-99 T 15-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NJ56_10330 b62813508f8dfc89d3728727dde2996e 191 Gene3D G3DSA:1.10.1740.10 1 120 1.5E-46 T 15-10-2018 NJ56_10330 b62813508f8dfc89d3728727dde2996e 191 Pfam PF08281 Sigma-70, region 4 129 180 4.5E-19 T 15-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NJ56_10330 b62813508f8dfc89d3728727dde2996e 191 Gene3D G3DSA:1.10.10.10 121 191 1.6E-23 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_10330 b62813508f8dfc89d3728727dde2996e 191 SUPERFAMILY SSF88659 122 183 9.53E-19 T 15-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like NJ56_10330 b62813508f8dfc89d3728727dde2996e 191 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 77 - T 15-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NJ56_10330 b62813508f8dfc89d3728727dde2996e 191 SUPERFAMILY SSF88946 2 103 6.75E-30 T 15-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 NJ56_10330 b62813508f8dfc89d3728727dde2996e 191 Pfam PF04542 Sigma-70 region 2 25 91 1.2E-16 T 15-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 NJ56_03395 1e2d16eed0305a6d82b4e69dd06e66e0 94 Pfam PF03230 Antirestriction protein 8 49 1.9E-10 T 15-10-2018 IPR004914 Antirestriction protein NJ56_03395 1e2d16eed0305a6d82b4e69dd06e66e0 94 ProDom PD012854 PLASMID KLCA ANTIRESTRICTION YFJX YCIB ARDB STABLE YFEB Z1216 C0275 8 49 3.0E-11 T 15-10-2018 IPR004914 Antirestriction protein NJ56_03395 1e2d16eed0305a6d82b4e69dd06e66e0 94 Gene3D G3DSA:1.10.472.120 6 55 4.0E-11 T 15-10-2018 NJ56_03845 b11bc8d0a572f87aa93f552de8dcf73a 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 291 313 2.3E-38 T 15-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_03845 b11bc8d0a572f87aa93f552de8dcf73a 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 350 364 2.3E-38 T 15-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_03845 b11bc8d0a572f87aa93f552de8dcf73a 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 429 442 2.3E-38 T 15-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_03845 b11bc8d0a572f87aa93f552de8dcf73a 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 365 379 2.3E-38 T 15-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_03845 b11bc8d0a572f87aa93f552de8dcf73a 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 63 82 2.3E-38 T 15-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_03845 b11bc8d0a572f87aa93f552de8dcf73a 482 Gene3D G3DSA:3.50.80.20 92 186 1.6E-20 T 15-10-2018 NJ56_03845 b11bc8d0a572f87aa93f552de8dcf73a 482 Gene3D G3DSA:3.40.710.10 247 482 1.8E-67 T 15-10-2018 NJ56_03845 b11bc8d0a572f87aa93f552de8dcf73a 482 SUPERFAMILY SSF56601 28 479 7.7E-101 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_03845 b11bc8d0a572f87aa93f552de8dcf73a 482 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 52 452 3.5E-165 T 15-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_03845 b11bc8d0a572f87aa93f552de8dcf73a 482 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 25 473 1.6E-162 T 15-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_03845 b11bc8d0a572f87aa93f552de8dcf73a 482 Gene3D G3DSA:3.40.710.10 26 91 4.7E-6 T 15-10-2018 NJ56_04760 60b0219ee7d650c767c13097970516ea 121 Gene3D G3DSA:1.20.5.710 2 50 1.4E-23 T 15-10-2018 NJ56_04760 60b0219ee7d650c767c13097970516ea 121 SUPERFAMILY SSF54736 50 121 1.03E-25 T 15-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like NJ56_04760 60b0219ee7d650c767c13097970516ea 121 Gene3D G3DSA:3.30.1390.10 51 121 3.2E-33 T 15-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like NJ56_04760 60b0219ee7d650c767c13097970516ea 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 121 25.612 T 15-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_04760 60b0219ee7d650c767c13097970516ea 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 56 121 2.0E-17 T 15-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_04760 60b0219ee7d650c767c13097970516ea 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 121 1.6E-31 T 15-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_04760 60b0219ee7d650c767c13097970516ea 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 121 1.5E-47 T 15-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_04760 60b0219ee7d650c767c13097970516ea 121 SUPERFAMILY SSF48300 3 57 1.44E-15 T 15-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_04760 60b0219ee7d650c767c13097970516ea 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 47 5.3E-16 T 15-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_11635 7ff030ab98253014f9f1a3814fed7899 164 SUPERFAMILY SSF116960 1 164 2.22E-68 T 15-10-2018 NJ56_11635 7ff030ab98253014f9f1a3814fed7899 164 PIRSF PIRSF006272 1 164 4.5E-74 T 15-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU NJ56_11635 7ff030ab98253014f9f1a3814fed7899 164 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 164 2.0E-91 T 15-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU NJ56_11635 7ff030ab98253014f9f1a3814fed7899 164 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 1 164 37.9 T 15-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU NJ56_11635 7ff030ab98253014f9f1a3814fed7899 164 Pfam PF03887 YfbU domain 1 164 4.2E-68 T 15-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU NJ56_11635 7ff030ab98253014f9f1a3814fed7899 164 Gene3D G3DSA:1.10.287.680 1 53 5.2E-33 T 15-10-2018 IPR023145 YfbU, helix-hairpin domain superfamily NJ56_11635 7ff030ab98253014f9f1a3814fed7899 164 Gene3D G3DSA:1.10.3190.10 54 164 2.0E-39 T 15-10-2018 IPR023146 YfbU, alpha-helical bundle domain superfamily NJ56_09950 950f58148d64aafcd2022dc40e09fb23 399 SUPERFAMILY SSF54631 276 396 9.96E-13 T 15-10-2018 NJ56_09950 950f58148d64aafcd2022dc40e09fb23 399 SUPERFAMILY SSF52540 43 271 2.92E-75 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09950 950f58148d64aafcd2022dc40e09fb23 399 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 37 394 3.1E-174 T 15-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 NJ56_09950 950f58148d64aafcd2022dc40e09fb23 399 Pfam PF00571 CBS domain 346 393 1.7E-5 T 15-10-2018 IPR000644 CBS domain NJ56_09950 950f58148d64aafcd2022dc40e09fb23 399 Gene3D G3DSA:3.10.580.10 295 395 2.4E-9 T 15-10-2018 NJ56_09950 950f58148d64aafcd2022dc40e09fb23 399 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_09950 950f58148d64aafcd2022dc40e09fb23 399 Pfam PF00005 ABC transporter 45 192 6.0E-34 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_09950 950f58148d64aafcd2022dc40e09fb23 399 Gene3D G3DSA:3.40.50.300 34 287 5.5E-78 T 15-10-2018 NJ56_09950 950f58148d64aafcd2022dc40e09fb23 399 SMART SM00382 53 242 6.2E-20 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_09415 0f97f31f52facc55d2ef48c9c12a6cf1 321 SUPERFAMILY SSF158544 204 254 2.88E-10 T 15-10-2018 IPR038072 GspK, central domain superfamily NJ56_09415 0f97f31f52facc55d2ef48c9c12a6cf1 321 SUPERFAMILY SSF158544 94 201 5.23E-7 T 15-10-2018 IPR038072 GspK, central domain superfamily NJ56_09415 0f97f31f52facc55d2ef48c9c12a6cf1 321 Gene3D G3DSA:1.10.40.60 204 251 1.4E-13 T 15-10-2018 IPR038072 GspK, central domain superfamily NJ56_09415 0f97f31f52facc55d2ef48c9c12a6cf1 321 Gene3D G3DSA:3.30.1300.30 79 90 1.4E-13 T 15-10-2018 NJ56_09415 0f97f31f52facc55d2ef48c9c12a6cf1 321 Pfam PF03934 Type II secretion system (T2SS), protein K 80 304 8.0E-18 T 15-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 NJ56_09415 0f97f31f52facc55d2ef48c9c12a6cf1 321 Gene3D G3DSA:1.10.40.60 91 203 1.4E-13 T 15-10-2018 IPR038072 GspK, central domain superfamily NJ56_13360 b5b9fc9bbc02df20df0f6f3dbe7c2a2b 400 Pfam PF05125 Phage major capsid protein, P2 family 8 340 3.4E-139 T 15-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid NJ56_13360 b5b9fc9bbc02df20df0f6f3dbe7c2a2b 400 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 9 342 7.0E-88 T 15-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid NJ56_06285 184005424df3234d09bbf8f4ddce5425 609 Pfam PF13522 Glutamine amidotransferase domain 65 184 3.6E-21 T 15-10-2018 NJ56_06285 184005424df3234d09bbf8f4ddce5425 609 Gene3D G3DSA:3.40.50.10490 447 594 1.3E-152 T 15-10-2018 NJ56_06285 184005424df3234d09bbf8f4ddce5425 609 SUPERFAMILY SSF53697 245 609 4.27E-112 T 15-10-2018 NJ56_06285 184005424df3234d09bbf8f4ddce5425 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 40.927 T 15-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 NJ56_06285 184005424df3234d09bbf8f4ddce5425 609 Gene3D G3DSA:3.60.20.10 2 241 1.0E-81 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_06285 184005424df3234d09bbf8f4ddce5425 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 3.0E-262 T 15-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 NJ56_06285 184005424df3234d09bbf8f4ddce5425 609 Pfam PF01380 SIS domain 462 591 2.3E-27 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_06285 184005424df3234d09bbf8f4ddce5425 609 Pfam PF01380 SIS domain 289 418 4.3E-33 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_06285 184005424df3234d09bbf8f4ddce5425 609 Gene3D G3DSA:3.40.50.10490 249 608 1.3E-152 T 15-10-2018 NJ56_06285 184005424df3234d09bbf8f4ddce5425 609 SUPERFAMILY SSF56235 2 233 2.92E-74 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 SMART SM01130 1 291 4.1E-141 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 SUPERFAMILY SSF51569 1 293 2.62E-96 T 15-10-2018 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 Pfam PF00701 Dihydrodipicolinate synthetase family 2 289 1.1E-113 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 1.8E-33 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 1.8E-33 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 1.8E-33 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 1.8E-33 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 15-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 289 64.318 T 15-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 15-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 Gene3D G3DSA:3.20.20.70 1 293 1.5E-111 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 289 3.7E-119 T 15-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_10890 36abc916b40ca59883aaf35c2ea1b5c7 293 PIRSF PIRSF001365 1 293 6.1E-91 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_11770 d27fdb0bc1bf4b771710af6d6430ba98 455 ProSitePatterns PS00455 Putative AMP-binding domain signature. 141 152 - T 15-10-2018 IPR020845 AMP-binding, conserved site NJ56_11770 d27fdb0bc1bf4b771710af6d6430ba98 455 Gene3D G3DSA:3.40.50.12780 4 356 1.0E-64 T 15-10-2018 NJ56_11770 d27fdb0bc1bf4b771710af6d6430ba98 455 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 31 447 1.3E-110 T 15-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 NJ56_11770 d27fdb0bc1bf4b771710af6d6430ba98 455 Pfam PF13193 AMP-binding enzyme C-terminal domain 370 438 1.4E-5 T 15-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain NJ56_11770 d27fdb0bc1bf4b771710af6d6430ba98 455 SUPERFAMILY SSF56801 9 454 1.57E-89 T 15-10-2018 NJ56_11770 d27fdb0bc1bf4b771710af6d6430ba98 455 Pfam PF00501 AMP-binding enzyme 10 358 3.7E-49 T 15-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 NJ56_11770 d27fdb0bc1bf4b771710af6d6430ba98 455 Gene3D G3DSA:3.30.300.30 357 435 6.0E-12 T 15-10-2018 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 2.5E-49 T 15-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 Gene3D G3DSA:3.40.50.800 4 554 2.5E-242 T 15-10-2018 IPR036621 Anticodon-binding domain superfamily NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 43.057 T 15-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 SUPERFAMILY SSF52954 462 571 4.38E-34 T 15-10-2018 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 SUPERFAMILY SSF55681 10 478 3.87E-107 T 15-10-2018 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 SUPERFAMILY SSF55826 218 390 1.29E-31 T 15-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 PIRSF PIRSF001535 1 572 2.1E-276 T 15-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 Pfam PF04073 Aminoacyl-tRNA editing domain 257 377 2.6E-26 T 15-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 567 1.2E-271 T 15-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 Gene3D G3DSA:3.90.960.10 240 389 2.5E-242 T 15-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.9E-19 T 15-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.9E-19 T 15-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.9E-19 T 15-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.9E-19 T 15-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 Pfam PF03129 Anticodon binding domain 475 568 3.9E-22 T 15-10-2018 IPR004154 Anticodon-binding NJ56_09825 8026370e40da6a74d6dc0bf726ef540d 572 Gene3D G3DSA:3.30.930.10 11 465 2.5E-242 T 15-10-2018 NJ56_00415 290b82765e62bbbb50bfdaa7305e7ae7 327 PIRSF PIRSF000962 5 327 9.3E-110 T 15-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 NJ56_00415 290b82765e62bbbb50bfdaa7305e7ae7 327 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 232 243 6.5E-31 T 15-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 NJ56_00415 290b82765e62bbbb50bfdaa7305e7ae7 327 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 278 289 6.5E-31 T 15-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 NJ56_00415 290b82765e62bbbb50bfdaa7305e7ae7 327 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 96 114 6.5E-31 T 15-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 NJ56_00415 290b82765e62bbbb50bfdaa7305e7ae7 327 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 123 144 6.5E-31 T 15-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 NJ56_00415 290b82765e62bbbb50bfdaa7305e7ae7 327 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 251 264 6.5E-31 T 15-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 NJ56_00415 290b82765e62bbbb50bfdaa7305e7ae7 327 Gene3D G3DSA:3.60.15.10 28 318 6.2E-16 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_00415 290b82765e62bbbb50bfdaa7305e7ae7 327 ProSitePatterns PS00607 cAMP phosphodiesterases class-II signature. 100 114 - T 15-10-2018 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site GO:0008081 NJ56_00415 290b82765e62bbbb50bfdaa7305e7ae7 327 Pfam PF02112 cAMP phosphodiesterases class-II 23 322 3.7E-55 T 15-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 NJ56_00415 290b82765e62bbbb50bfdaa7305e7ae7 327 SUPERFAMILY SSF56281 23 267 1.35E-18 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_02365 932d9c6b079be4eb546819de0021bbd7 244 SUPERFAMILY SSF52402 23 208 7.23E-53 T 15-10-2018 NJ56_02365 932d9c6b079be4eb546819de0021bbd7 244 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 9 243 39.449 T 15-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 NJ56_02365 932d9c6b079be4eb546819de0021bbd7 244 PIRSF PIRSF000857 3 244 1.0E-55 T 15-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 NJ56_02365 932d9c6b079be4eb546819de0021bbd7 244 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 33 243 3.0E-89 T 15-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 NJ56_02365 932d9c6b079be4eb546819de0021bbd7 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 48 219 1.7E-49 T 15-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 NJ56_02365 932d9c6b079be4eb546819de0021bbd7 244 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 22 242 5.6E-94 T 15-10-2018 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 NJ56_02365 932d9c6b079be4eb546819de0021bbd7 244 Gene3D G3DSA:3.40.50.620 2 216 2.7E-63 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_03960 a31bffa09e77e4898bbf5738154f899b 247 Gene3D G3DSA:3.40.190.80 148 246 9.8E-32 T 15-10-2018 NJ56_03960 a31bffa09e77e4898bbf5738154f899b 247 Pfam PF00459 Inositol monophosphatase family 7 234 5.7E-46 T 15-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 NJ56_03960 a31bffa09e77e4898bbf5738154f899b 247 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 15-10-2018 IPR020583 Inositol monophosphatase, metal-binding site NJ56_03960 a31bffa09e77e4898bbf5738154f899b 247 Gene3D G3DSA:3.30.540.10 2 147 3.0E-43 T 15-10-2018 NJ56_03960 a31bffa09e77e4898bbf5738154f899b 247 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 2 247 40.774 T 15-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 NJ56_03960 a31bffa09e77e4898bbf5738154f899b 247 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 205 219 - T 15-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 NJ56_03960 a31bffa09e77e4898bbf5738154f899b 247 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 2 245 2.2E-101 T 15-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 NJ56_03960 a31bffa09e77e4898bbf5738154f899b 247 SUPERFAMILY SSF56655 2 243 6.94E-72 T 15-10-2018 NJ56_16510 bcebf84f86335dcead44f2e6ce93ca13 341 Pfam PF02618 YceG-like family 44 329 6.9E-81 T 15-10-2018 IPR003770 Endolytic murein transglycosylase NJ56_16510 bcebf84f86335dcead44f2e6ce93ca13 341 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 6 333 33.241 T 15-10-2018 IPR003770 Endolytic murein transglycosylase NJ56_16510 bcebf84f86335dcead44f2e6ce93ca13 341 Gene3D G3DSA:3.30.160.60 72 110 1.6E-22 T 15-10-2018 NJ56_16510 bcebf84f86335dcead44f2e6ce93ca13 341 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 8 338 6.4E-123 T 15-10-2018 IPR003770 Endolytic murein transglycosylase NJ56_16510 bcebf84f86335dcead44f2e6ce93ca13 341 Gene3D G3DSA:3.30.160.60 303 341 8.1E-21 T 15-10-2018 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 Gene3D G3DSA:3.30.413.10 141 348 1.6E-89 T 15-10-2018 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 10 571 58.108 T 15-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 SUPERFAMILY SSF56014 429 561 8.77E-35 T 15-10-2018 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 PRINTS PR00397 Sirohaem Fe-binding site signature 478 496 4.0E-8 T 15-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 PRINTS PR00397 Sirohaem Fe-binding site signature 430 448 4.0E-8 T 15-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 431 558 0.0022 T 15-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 19 559 1.8E-290 T 15-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 173 330 3.2E-46 T 15-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 SUPERFAMILY SSF56014 150 344 9.68E-58 T 15-10-2018 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 SUPERFAMILY SSF55124 14 142 2.13E-25 T 15-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 353 416 5.3E-14 T 15-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 80 139 3.6E-13 T 15-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 478 494 - T 15-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 Gene3D G3DSA:3.30.413.10 426 568 4.6E-36 T 15-10-2018 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 SUPERFAMILY SSF55124 346 422 3.27E-21 T 15-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02370 9916115bead4971ca35e8818d7b91657 571 Gene3D G3DSA:3.90.480.20 17 407 1.6E-89 T 15-10-2018 NJ56_05860 d798944956808cf6ffad1f9a05ce149b 310 Gene3D G3DSA:3.40.50.720 3 302 3.1E-120 T 15-10-2018 NJ56_05860 d798944956808cf6ffad1f9a05ce149b 310 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 309 49.255 T 15-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 NJ56_05860 d798944956808cf6ffad1f9a05ce149b 310 Gene3D G3DSA:3.90.25.10 168 290 3.1E-120 T 15-10-2018 NJ56_05860 d798944956808cf6ffad1f9a05ce149b 310 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 308 6.6E-136 T 15-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 NJ56_05860 d798944956808cf6ffad1f9a05ce149b 310 SUPERFAMILY SSF51735 1 306 7.25E-65 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_05860 d798944956808cf6ffad1f9a05ce149b 310 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 236 2.9E-46 T 15-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 NJ56_17230 f37d6638eb120bab29c758770a98ea2d 275 SUPERFAMILY SSF51735 1 267 2.76E-31 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_17230 f37d6638eb120bab29c758770a98ea2d 275 Gene3D G3DSA:3.40.50.720 1 271 1.2E-59 T 15-10-2018 NJ56_17230 f37d6638eb120bab29c758770a98ea2d 275 Pfam PF01370 NAD dependent epimerase/dehydratase family 9 213 3.4E-6 T 15-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 NJ56_05415 e85df596914d8cb03111fb093901df46 497 SUPERFAMILY SSF53067 7 128 1.88E-38 T 15-10-2018 NJ56_05415 e85df596914d8cb03111fb093901df46 497 Gene3D G3DSA:1.10.3210.10 305 497 8.8E-48 T 15-10-2018 NJ56_05415 e85df596914d8cb03111fb093901df46 497 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 8 300 4.7E-94 T 15-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 NJ56_05415 e85df596914d8cb03111fb093901df46 497 Gene3D G3DSA:3.30.420.150 112 289 2.6E-88 T 15-10-2018 NJ56_05415 e85df596914d8cb03111fb093901df46 497 SUPERFAMILY SSF109604 307 494 7.85E-46 T 15-10-2018 NJ56_05415 e85df596914d8cb03111fb093901df46 497 SUPERFAMILY SSF53067 132 300 1.34E-42 T 15-10-2018 NJ56_05415 e85df596914d8cb03111fb093901df46 497 Gene3D G3DSA:3.30.420.40 9 297 2.6E-88 T 15-10-2018 NJ56_05415 e85df596914d8cb03111fb093901df46 497 Pfam PF02541 Ppx/GppA phosphatase family 21 301 1.3E-97 T 15-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 NJ56_05415 e85df596914d8cb03111fb093901df46 497 PIRSF PIRSF001267 1 496 1.2E-182 T 15-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 NJ56_05415 e85df596914d8cb03111fb093901df46 497 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 2 494 53.537 T 15-10-2018 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 NJ56_01200 5c21ed8cecb570fa898e268e09f8dc86 224 SMART SM00862 144 217 2.6E-15 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_01200 5c21ed8cecb570fa898e268e09f8dc86 224 SMART SM00448 1 112 2.6E-42 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_01200 5c21ed8cecb570fa898e268e09f8dc86 224 SUPERFAMILY SSF46894 119 218 7.29E-18 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_01200 5c21ed8cecb570fa898e268e09f8dc86 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 217 1.7E-16 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_01200 5c21ed8cecb570fa898e268e09f8dc86 224 Gene3D G3DSA:3.40.50.2300 1 121 2.1E-41 T 15-10-2018 NJ56_01200 5c21ed8cecb570fa898e268e09f8dc86 224 Pfam PF00072 Response regulator receiver domain 3 113 2.2E-28 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_01200 5c21ed8cecb570fa898e268e09f8dc86 224 Gene3D G3DSA:1.10.10.10 122 223 5.0E-18 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_01200 5c21ed8cecb570fa898e268e09f8dc86 224 SUPERFAMILY SSF52172 1 130 2.85E-40 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_05080 ec2dd3e6b80ef31fc6b73cdbbd937cad 388 SUPERFAMILY SSF110738 1 375 1.18E-142 T 15-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 NJ56_05080 ec2dd3e6b80ef31fc6b73cdbbd937cad 388 PIRSF PIRSF006078 1 378 9.7E-134 T 15-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 NJ56_05080 ec2dd3e6b80ef31fc6b73cdbbd937cad 388 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 2.3E-159 T 15-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 NJ56_05080 ec2dd3e6b80ef31fc6b73cdbbd937cad 388 Gene3D G3DSA:3.90.1510.10 42 276 7.7E-142 T 15-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 NJ56_05080 ec2dd3e6b80ef31fc6b73cdbbd937cad 388 Pfam PF02595 Glycerate kinase family 3 374 3.8E-149 T 15-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 NJ56_05080 ec2dd3e6b80ef31fc6b73cdbbd937cad 388 Gene3D G3DSA:3.40.50.10350 1 362 7.7E-142 T 15-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold NJ56_02850 96d2a748c1f63fc4ed85b1ee120a147a 233 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 2 210 1.2E-103 T 15-10-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0016021|GO:0042626|GO:0071934 NJ56_02850 96d2a748c1f63fc4ed85b1ee120a147a 233 Gene3D G3DSA:3.40.50.300 1 222 2.5E-64 T 15-10-2018 NJ56_02850 96d2a748c1f63fc4ed85b1ee120a147a 233 SUPERFAMILY SSF52540 1 219 2.78E-65 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02850 96d2a748c1f63fc4ed85b1ee120a147a 233 Pfam PF00005 ABC transporter 19 157 6.6E-36 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_02850 96d2a748c1f63fc4ed85b1ee120a147a 233 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_02850 96d2a748c1f63fc4ed85b1ee120a147a 233 SMART SM00382 24 214 1.5E-19 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_10290 c70f0de11c8f9d5c4082fe335efa8d6a 192 Gene3D G3DSA:2.30.22.10 133 189 6.1E-27 T 15-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 NJ56_10290 c70f0de11c8f9d5c4082fe335efa8d6a 192 ProSitePatterns PS01071 grpE protein signature. 144 187 - T 15-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 NJ56_10290 c70f0de11c8f9d5c4082fe335efa8d6a 192 Hamap MF_01151 Protein GrpE [grpE]. 4 189 21.488 T 15-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 NJ56_10290 c70f0de11c8f9d5c4082fe335efa8d6a 192 PRINTS PR00773 GrpE protein signature 141 156 4.1E-26 T 15-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 NJ56_10290 c70f0de11c8f9d5c4082fe335efa8d6a 192 PRINTS PR00773 GrpE protein signature 168 187 4.1E-26 T 15-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 NJ56_10290 c70f0de11c8f9d5c4082fe335efa8d6a 192 PRINTS PR00773 GrpE protein signature 86 101 4.1E-26 T 15-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 NJ56_10290 c70f0de11c8f9d5c4082fe335efa8d6a 192 PRINTS PR00773 GrpE protein signature 58 74 4.1E-26 T 15-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 NJ56_10290 c70f0de11c8f9d5c4082fe335efa8d6a 192 SUPERFAMILY SSF51064 134 190 7.85E-19 T 15-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 NJ56_10290 c70f0de11c8f9d5c4082fe335efa8d6a 192 Gene3D G3DSA:3.90.20.20 29 132 3.8E-34 T 15-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 NJ56_10290 c70f0de11c8f9d5c4082fe335efa8d6a 192 Pfam PF01025 GrpE 21 189 2.1E-49 T 15-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 NJ56_10290 c70f0de11c8f9d5c4082fe335efa8d6a 192 SUPERFAMILY SSF58014 44 133 4.97E-26 T 15-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 NJ56_11315 8665790c4a0dcb13d221ca14887f284a 114 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 4 113 3.6E-51 T 15-10-2018 IPR004624 PhnA protein NJ56_11315 8665790c4a0dcb13d221ca14887f284a 114 Pfam PF03831 PhnA domain 46 113 1.3E-34 T 15-10-2018 IPR013988 PhnA protein, C-terminal NJ56_11315 8665790c4a0dcb13d221ca14887f284a 114 SUPERFAMILY SSF82057 40 113 2.01E-29 T 15-10-2018 NJ56_11315 8665790c4a0dcb13d221ca14887f284a 114 Pfam PF08274 PhnA Zinc-Ribbon 3 32 8.5E-13 T 15-10-2018 IPR013987 PhnA protein, N-terminal NJ56_11315 8665790c4a0dcb13d221ca14887f284a 114 Gene3D G3DSA:2.30.30.40 43 114 7.4E-36 T 15-10-2018 NJ56_11315 8665790c4a0dcb13d221ca14887f284a 114 Gene3D G3DSA:2.20.25.10 1 42 5.9E-15 T 15-10-2018 NJ56_11315 8665790c4a0dcb13d221ca14887f284a 114 SUPERFAMILY SSF57783 3 34 3.06E-12 T 15-10-2018 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PIRSF PIRSF000207 1 600 2.6E-273 T 15-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 SUPERFAMILY SSF52343 445 600 1.28E-50 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 Pfam PF00175 Oxidoreductase NAD-binding domain 458 565 6.7E-20 T 15-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 Pfam PF00667 FAD binding domain 231 425 1.9E-24 T 15-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 Gene3D G3DSA:3.40.50.80 446 600 8.9E-59 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 Gene3D G3DSA:1.20.990.10 281 385 2.9E-73 T 15-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 495 506 5.9E-29 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 457 476 5.9E-29 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 549 557 5.9E-29 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 526 542 5.9E-29 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 420 429 5.9E-29 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 387 394 5.9E-29 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 271 281 5.9E-29 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 482 491 5.9E-29 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 10 600 2.6E-268 T 15-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 2 600 51.662 T 15-10-2018 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 Pfam PF00258 Flavodoxin 65 187 8.7E-30 T 15-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00369 Flavodoxin signature 144 154 1.5E-13 T 15-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00369 Flavodoxin signature 168 187 1.5E-13 T 15-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00369 Flavodoxin signature 64 77 1.5E-13 T 15-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 PRINTS PR00369 Flavodoxin signature 112 123 1.5E-13 T 15-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 SUPERFAMILY SSF52218 62 209 1.45E-42 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 Gene3D G3DSA:3.40.50.360 55 218 1.0E-44 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 SUPERFAMILY SSF63380 229 447 1.55E-62 T 15-10-2018 IPR017938 Riboflavin synthase-like beta-barrel NJ56_02375 b3abed63b05a6494599abd2f9c2a4df5 600 Gene3D G3DSA:2.40.30.10 234 440 2.9E-73 T 15-10-2018 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 461 33.045 T 15-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 4.9E-27 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 4.9E-27 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 4.9E-27 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 4.9E-27 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 4.9E-27 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 Gene3D G3DSA:1.10.10.350 367 470 1.7E-24 T 15-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 SUPERFAMILY SSF48163 299 461 1.15E-45 T 15-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 15-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 462 2.0E-201 T 15-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 3.8E-116 T 15-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 SUPERFAMILY SSF52374 3 298 9.12E-114 T 15-10-2018 NJ56_11205 6ed1bd75e027eb30d89c37446fb6ba99 471 Gene3D G3DSA:3.40.50.620 1 313 8.9E-136 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_00115 a5bd6143cb647c26e36fd1a9bdacb970 236 Gene3D G3DSA:3.40.50.300 1 234 2.4E-48 T 15-10-2018 NJ56_00115 a5bd6143cb647c26e36fd1a9bdacb970 236 SMART SM00382 26 215 4.7E-9 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_00115 a5bd6143cb647c26e36fd1a9bdacb970 236 SUPERFAMILY SSF52540 2 228 8.51E-49 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00115 a5bd6143cb647c26e36fd1a9bdacb970 236 Pfam PF00005 ABC transporter 19 164 2.5E-24 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 301 1.2E-118 T 15-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 SUPERFAMILY SSF53784 3 316 3.66E-107 T 15-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 122 139 9.8E-81 T 15-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 140 158 9.8E-81 T 15-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 9.8E-81 T 15-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 9.8E-81 T 15-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 214 226 9.8E-81 T 15-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 9.8E-81 T 15-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 160 176 9.8E-81 T 15-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 178 195 9.8E-81 T 15-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 241 263 9.8E-81 T 15-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 PIRSF PIRSF000532 1 328 2.8E-121 T 15-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 328 44.511 T 15-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 Gene3D G3DSA:3.40.50.450 4 280 2.0E-113 T 15-10-2018 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 Pfam PF00365 Phosphofructokinase 4 277 5.4E-107 T 15-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 Gene3D G3DSA:3.40.50.460 144 253 2.0E-113 T 15-10-2018 NJ56_05780 16b0e1f9b2661b610ae14f39506113c7 328 ProSitePatterns PS00433 Phosphofructokinase signature. 245 263 - T 15-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 NJ56_09450 95a7382181d84e2e72930d9d88942812 302 SUPERFAMILY SSF53850 88 293 1.72E-45 T 15-10-2018 NJ56_09450 95a7382181d84e2e72930d9d88942812 302 Gene3D G3DSA:3.40.190.10 163 262 9.7E-62 T 15-10-2018 NJ56_09450 95a7382181d84e2e72930d9d88942812 302 Pfam PF03466 LysR substrate binding domain 88 291 1.3E-42 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_09450 95a7382181d84e2e72930d9d88942812 302 Gene3D G3DSA:1.10.10.10 3 82 1.8E-18 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_09450 95a7382181d84e2e72930d9d88942812 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 2.1E-15 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_09450 95a7382181d84e2e72930d9d88942812 302 Gene3D G3DSA:3.40.190.10 91 289 9.7E-62 T 15-10-2018 NJ56_09450 95a7382181d84e2e72930d9d88942812 302 SUPERFAMILY SSF46785 6 107 1.48E-18 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_15115 568414a0db27fe61b1b26c556f71a026 348 SUPERFAMILY SSF51735 4 196 2.53E-50 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_15115 568414a0db27fe61b1b26c556f71a026 348 Gene3D G3DSA:3.40.50.720 5 316 8.5E-135 T 15-10-2018 NJ56_15115 568414a0db27fe61b1b26c556f71a026 348 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 134 240 1.6E-12 T 15-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 NJ56_15115 568414a0db27fe61b1b26c556f71a026 348 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 121 5.2E-23 T 15-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 NJ56_15115 568414a0db27fe61b1b26c556f71a026 348 Gene3D G3DSA:3.30.360.10 127 330 8.5E-135 T 15-10-2018 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 738 54.828 T 15-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 315 329 - T 15-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 603 628 4.6E-5 T 15-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 715 750 4.5E-11 T 15-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Gene3D G3DSA:2.20.25.10 814 871 3.2E-31 T 15-10-2018 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 SMART SM00437 278 533 7.6E-120 T 15-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 641 1.5E-255 T 15-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Gene3D G3DSA:3.40.50.140 1 169 1.0E-67 T 15-10-2018 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 SMART SM00493 3 138 1.3E-34 T 15-10-2018 IPR006171 TOPRIM domain NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 197 215 6.8E-37 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 396 412 6.8E-37 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 320 329 6.8E-37 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 496 510 6.8E-37 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 112 125 6.8E-37 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 SUPERFAMILY SSF57783 751 813 5.61E-19 T 15-10-2018 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 SUPERFAMILY SSF57783 593 628 1.87E-6 T 15-10-2018 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Pfam PF01131 DNA topoisomerase 163 571 6.9E-127 T 15-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Pfam PF01751 Toprim domain 5 148 8.5E-33 T 15-10-2018 IPR006171 TOPRIM domain NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Pfam PF08272 Topoisomerase I zinc-ribbon-like 764 799 3.9E-12 T 15-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Pfam PF08272 Topoisomerase I zinc-ribbon-like 830 870 1.3E-23 T 15-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 SMART SM00436 139 227 4.9E-48 T 15-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Gene3D G3DSA:1.10.290.10 286 410 8.9E-164 T 15-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 SUPERFAMILY SSF57783 815 871 5.95E-23 T 15-10-2018 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Gene3D G3DSA:3.30.65.10 706 750 1.1E-5 T 15-10-2018 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Gene3D G3DSA:3.30.65.10 751 813 2.2E-31 T 15-10-2018 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Gene3D G3DSA:2.70.20.10 219 479 8.9E-164 T 15-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 Gene3D G3DSA:1.10.460.10 171 577 8.9E-164 T 15-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 SUPERFAMILY SSF57783 707 749 7.82E-7 T 15-10-2018 NJ56_15255 b5d55c4ade57be6565e4bac5df0dde9b 871 SUPERFAMILY SSF56712 3 614 1.57E-201 T 15-10-2018 IPR023405 DNA topoisomerase, type IA, core domain NJ56_04460 b9363c7227602968cffa069046b790b6 748 Pfam PF00082 Subtilase family 204 525 8.2E-38 T 15-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 NJ56_04460 b9363c7227602968cffa069046b790b6 748 Gene3D G3DSA:3.40.50.200 200 542 4.9E-30 T 15-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 NJ56_04460 b9363c7227602968cffa069046b790b6 748 SUPERFAMILY SSF52743 203 547 4.97E-38 T 15-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 SUPERFAMILY SSF88697 276 366 1.1E-23 T 15-10-2018 IPR015947 PUA-like superfamily NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 Gene3D G3DSA:2.30.130.10 266 367 2.4E-29 T 15-10-2018 IPR036974 PUA domain superfamily GO:0003723 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 PRINTS PR00474 Glutamate 5-kinase family signature 76 104 6.9E-57 T 15-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 PRINTS PR00474 Glutamate 5-kinase family signature 148 175 6.9E-57 T 15-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 PRINTS PR00474 Glutamate 5-kinase family signature 116 137 6.9E-57 T 15-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 PRINTS PR00474 Glutamate 5-kinase family signature 209 229 6.9E-57 T 15-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 PRINTS PR00474 Glutamate 5-kinase family signature 42 56 6.9E-57 T 15-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 TIGRFAM TIGR01027 proB: glutamate 5-kinase 5 365 4.7E-152 T 15-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 Pfam PF01472 PUA domain 276 350 4.9E-21 T 15-10-2018 IPR002478 PUA domain GO:0003723 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 Hamap MF_00456 Glutamate 5-kinase [proB]. 5 263 35.993 T 15-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 SUPERFAMILY SSF53633 6 256 5.37E-65 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 Pfam PF00696 Amino acid kinase family 6 234 7.3E-44 T 15-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 SMART SM00359 276 359 2.5E-21 T 15-10-2018 IPR002478 PUA domain GO:0003723 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 PIRSF PIRSF000729 1 367 1.5E-141 T 15-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 ProSitePatterns PS00902 Glutamate 5-kinase signature. 207 224 - T 15-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 NJ56_01685 2d61a2da8a9220c19075c5d612684757 367 Gene3D G3DSA:3.40.1160.10 2 258 6.2E-87 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 SUPERFAMILY SSF48452 613 743 1.49E-8 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 Pfam PF13432 Tetratricopeptide repeat 279 337 0.0011 T 15-10-2018 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 Pfam PF13432 Tetratricopeptide repeat 366 423 1.4E-4 T 15-10-2018 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 Pfam PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) 807 1139 1.7E-122 T 15-10-2018 IPR008410 Cellulose synthase operon C, C-terminal GO:0019867|GO:0030244 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 SUPERFAMILY SSF48452 61 340 1.19E-13 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 Gene3D G3DSA:1.25.40.10 355 452 5.4E-13 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 SMART SM00028 389 422 12.0 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 SMART SM00028 499 532 190.0 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 SMART SM00028 607 640 310.0 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 SMART SM00028 465 498 12.0 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 SMART SM00028 355 388 26.0 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 SMART SM00028 307 340 41.0 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 Pfam PF14559 Tetratricopeptide repeat 617 665 3.4E-8 T 15-10-2018 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 Pfam PF14559 Tetratricopeptide repeat 475 535 1.2E-6 T 15-10-2018 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 SUPERFAMILY SSF48452 278 544 1.04E-19 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 Gene3D G3DSA:1.25.40.10 236 354 6.4E-8 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_06740 d2da327ff72b63e12e2739f3976d841b 1160 Gene3D G3DSA:1.25.40.10 43 232 7.6E-9 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 205 2.3E-81 T 15-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 Gene3D G3DSA:3.40.50.620 209 405 1.1E-72 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 5.1E-6 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 5.1E-6 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 5.1E-6 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 525 55.526 T 15-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 SUPERFAMILY SSF54810 405 525 2.22E-51 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 213 525 1.4E-153 T 15-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 Gene3D G3DSA:3.40.50.880 9 206 3.4E-54 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 Pfam PF02540 NAD synthase 223 254 4.3E-6 T 15-10-2018 IPR022310 NAD/GMP synthase NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 8.9E-8 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 177 190 8.9E-8 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 8.9E-8 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 PRINTS PR00097 Anthranilate synthase component II signature 177 190 1.1E-6 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 PRINTS PR00097 Anthranilate synthase component II signature 54 63 1.1E-6 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 PRINTS PR00097 Anthranilate synthase component II signature 81 92 1.1E-6 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 SUPERFAMILY SSF52402 194 446 8.82E-56 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 SUPERFAMILY SSF52317 4 204 4.03E-55 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 Gene3D G3DSA:3.30.300.10 406 525 2.0E-51 T 15-10-2018 NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 Pfam PF00117 Glutamine amidotransferase class-I 12 200 5.0E-40 T 15-10-2018 IPR017926 Glutamine amidotransferase NJ56_10655 8438e970160066d45af6a5d72ecdc098 525 Pfam PF00958 GMP synthase C terminal domain 433 524 7.8E-44 T 15-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 NJ56_10265 bc573e474c23e97714230a4171db8120 94 Pfam PF03658 RnfH family Ubiquitin 6 86 5.0E-34 T 15-10-2018 IPR005346 RnfH protein NJ56_10265 bc573e474c23e97714230a4171db8120 94 Hamap MF_00460 Protein RnfH [rnfH]. 4 94 24.519 T 15-10-2018 IPR005346 RnfH protein NJ56_10265 bc573e474c23e97714230a4171db8120 94 SUPERFAMILY SSF54285 4 78 2.14E-26 T 15-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp NJ56_10265 bc573e474c23e97714230a4171db8120 94 Gene3D G3DSA:3.10.20.280 1 87 4.3E-33 T 15-10-2018 IPR037021 RnfH superfamily NJ56_15840 43785a602a646499af05679df1809ee5 345 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 345 183.727 T 15-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 NJ56_15840 43785a602a646499af05679df1809ee5 345 SUPERFAMILY SSF46785 260 331 2.94E-25 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_15840 43785a602a646499af05679df1809ee5 345 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 334 4.0E-40 T 15-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 NJ56_15840 43785a602a646499af05679df1809ee5 345 Gene3D G3DSA:1.10.8.60 185 258 1.8E-29 T 15-10-2018 NJ56_15840 43785a602a646499af05679df1809ee5 345 Gene3D G3DSA:1.10.10.10 260 339 1.4E-33 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_15840 43785a602a646499af05679df1809ee5 345 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 238 4.6E-117 T 15-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 NJ56_15840 43785a602a646499af05679df1809ee5 345 Gene3D G3DSA:3.40.50.300 21 184 2.9E-40 T 15-10-2018 NJ56_15840 43785a602a646499af05679df1809ee5 345 SUPERFAMILY SSF52540 23 255 3.61E-53 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15840 43785a602a646499af05679df1809ee5 345 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 6.2E-34 T 15-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 NJ56_15840 43785a602a646499af05679df1809ee5 345 SMART SM00382 54 181 1.2E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_15840 43785a602a646499af05679df1809ee5 345 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 26 329 4.4E-149 T 15-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 NJ56_16525 7546342fdd6ce8031c9e2a5ef69dd3ee 78 Gene3D G3DSA:1.10.1200.10 1 78 1.3E-28 T 15-10-2018 IPR036736 ACP-like superfamily NJ56_16525 7546342fdd6ce8031c9e2a5ef69dd3ee 78 SUPERFAMILY SSF47336 2 76 9.55E-23 T 15-10-2018 IPR036736 ACP-like superfamily NJ56_16525 7546342fdd6ce8031c9e2a5ef69dd3ee 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 21.925 T 15-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 NJ56_16525 7546342fdd6ce8031c9e2a5ef69dd3ee 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 1.1E-36 T 15-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 NJ56_16525 7546342fdd6ce8031c9e2a5ef69dd3ee 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 3.1E-15 T 15-10-2018 IPR009081 Phosphopantetheine binding ACP domain NJ56_16525 7546342fdd6ce8031c9e2a5ef69dd3ee 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 15-10-2018 IPR006162 Phosphopantetheine attachment site NJ56_13165 b135779043eb3c125df71c03d4b6a99a 447 PIRSF PIRSF006060 1 437 4.0E-49 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_13165 b135779043eb3c125df71c03d4b6a99a 447 Gene3D G3DSA:1.20.1740.10 2 445 5.6E-59 T 15-10-2018 NJ56_13165 b135779043eb3c125df71c03d4b6a99a 447 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 2 432 3.3E-135 T 15-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 NJ56_13165 b135779043eb3c125df71c03d4b6a99a 447 Pfam PF13520 Amino acid permease 7 418 1.3E-38 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_09705 a61c3cf6a3743e182cdade5f39ac0e8f 398 SUPERFAMILY SSF69055 302 392 3.92E-31 T 15-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 NJ56_09705 a61c3cf6a3743e182cdade5f39ac0e8f 398 SUPERFAMILY SSF51735 2 150 4.14E-46 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_09705 a61c3cf6a3743e182cdade5f39ac0e8f 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 7.5E-42 T 15-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 NJ56_09705 a61c3cf6a3743e182cdade5f39ac0e8f 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 392 47.243 T 15-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 NJ56_09705 a61c3cf6a3743e182cdade5f39ac0e8f 398 PIRSF PIRSF006205 1 397 3.6E-158 T 15-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 NJ56_09705 a61c3cf6a3743e182cdade5f39ac0e8f 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 7.2E-48 T 15-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 NJ56_09705 a61c3cf6a3743e182cdade5f39ac0e8f 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 7.0E-37 T 15-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 NJ56_09705 a61c3cf6a3743e182cdade5f39ac0e8f 398 Gene3D G3DSA:3.40.50.720 1 150 5.6E-57 T 15-10-2018 NJ56_09705 a61c3cf6a3743e182cdade5f39ac0e8f 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 390 5.3E-182 T 15-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 NJ56_09705 a61c3cf6a3743e182cdade5f39ac0e8f 398 Gene3D G3DSA:1.10.1740.10 312 397 2.0E-29 T 15-10-2018 NJ56_09705 a61c3cf6a3743e182cdade5f39ac0e8f 398 SUPERFAMILY SSF55347 126 274 3.92E-63 T 15-10-2018 NJ56_03055 752b6348bd345496fb1adcfa2a347f17 238 SMART SM00862 156 232 1.8E-14 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_03055 752b6348bd345496fb1adcfa2a347f17 238 SUPERFAMILY SSF52172 2 125 1.32E-35 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_03055 752b6348bd345496fb1adcfa2a347f17 238 Pfam PF00072 Response regulator receiver domain 6 113 2.6E-27 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_03055 752b6348bd345496fb1adcfa2a347f17 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 5.6E-18 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_03055 752b6348bd345496fb1adcfa2a347f17 238 SUPERFAMILY SSF46894 137 234 4.25E-21 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_03055 752b6348bd345496fb1adcfa2a347f17 238 Gene3D G3DSA:3.40.50.2300 1 123 8.7E-33 T 15-10-2018 NJ56_03055 752b6348bd345496fb1adcfa2a347f17 238 Gene3D G3DSA:1.10.10.10 126 236 1.1E-25 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_03055 752b6348bd345496fb1adcfa2a347f17 238 SMART SM00448 4 114 2.6E-38 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00070 97c8ae61d6d799b64d9878e9795f873b 159 Gene3D G3DSA:3.30.70.640 1 159 8.0E-71 T 15-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_00070 97c8ae61d6d799b64d9878e9795f873b 159 Pfam PF01967 MoaC family 15 150 2.1E-54 T 15-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_00070 97c8ae61d6d799b64d9878e9795f873b 159 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 158 36.38 T 15-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_00070 97c8ae61d6d799b64d9878e9795f873b 159 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 5.5E-72 T 15-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_00070 97c8ae61d6d799b64d9878e9795f873b 159 SUPERFAMILY SSF55040 11 155 5.1E-61 T 15-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 Gene3D G3DSA:3.30.565.10 395 543 6.7E-24 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 SUPERFAMILY SSF55785 225 280 2.24E-8 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 Gene3D G3DSA:3.30.450.20 209 323 3.6E-14 T 15-10-2018 NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 431 539 8.3E-17 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 SMART SM00091 223 291 6.5E-7 T 15-10-2018 IPR000014 PAS domain NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 SUPERFAMILY SSF55874 405 537 1.31E-25 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 SUPERFAMILY SSF55890 334 377 3.14E-7 T 15-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 PRINTS PR00344 Bacterial sensor protein C-terminal signature 500 518 1.2E-6 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 484 1.2E-6 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 537 1.2E-6 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 SUPERFAMILY SSF103190 49 178 4.71E-32 T 15-10-2018 IPR029151 Periplasmic sensor-like domain superfamily NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 Gene3D G3DSA:3.30.450.20 43 174 1.1E-38 T 15-10-2018 NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 SMART SM00387 429 540 8.0E-23 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_12640 0c0171a659e1416f5ce084d72542d25f 544 Pfam PF17203 Single cache domain 3 58 174 8.2E-19 T 15-10-2018 IPR033463 Single cache domain 3 NJ56_07495 77aa579be87e58190b3b34d03c9259da 128 Gene3D G3DSA:3.90.1030.10 1 117 3.3E-48 T 15-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07495 77aa579be87e58190b3b34d03c9259da 128 SUPERFAMILY SSF64263 1 118 4.58E-51 T 15-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07495 77aa579be87e58190b3b34d03c9259da 128 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 6.9E-51 T 15-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07495 77aa579be87e58190b3b34d03c9259da 128 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.022 T 15-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07495 77aa579be87e58190b3b34d03c9259da 128 Pfam PF01196 Ribosomal protein L17 20 116 1.3E-34 T 15-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07495 77aa579be87e58190b3b34d03c9259da 128 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 15-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_16745 9e34bb9acb5c4147a18db385c1baf047 151 Hamap MF_01073 Macrodomain Ter protein [matP]. 1 148 29.648 T 15-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 NJ56_16745 9e34bb9acb5c4147a18db385c1baf047 151 Gene3D G3DSA:1.10.1220.10 98 150 4.2E-33 T 15-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 NJ56_16745 9e34bb9acb5c4147a18db385c1baf047 151 Pfam PF06303 MatP N-terminal domain 2 85 1.1E-44 T 15-10-2018 IPR035087 MatP, N-terminal NJ56_16745 9e34bb9acb5c4147a18db385c1baf047 151 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 1 131 1.0E-65 T 15-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 NJ56_16745 9e34bb9acb5c4147a18db385c1baf047 151 Gene3D G3DSA:1.20.1270.380 1 89 4.3E-48 T 15-10-2018 IPR038339 MatP, N-terminal domain superfamily NJ56_16745 9e34bb9acb5c4147a18db385c1baf047 151 Pfam PF17414 MatP C-terminal ribbon-helix-helix domain 88 147 3.4E-31 T 15-10-2018 IPR035375 MatP, C-terminal ribbon-helix-helix domain NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 153 276 6.6E-16 T 15-10-2018 IPR000014 PAS domain NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 SUPERFAMILY SSF47226 662 774 1.96E-30 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 SMART SM00091 155 221 2.8E-7 T 15-10-2018 IPR000014 PAS domain NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 505 1.6E-28 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 PIRSF PIRSF003182 1 779 0.0 T 15-10-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 SMART SM00388 282 347 3.5E-18 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 Gene3D G3DSA:3.30.450.20 152 267 1.9E-19 T 15-10-2018 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 SMART SM00073 676 773 5.5E-16 T 15-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 SUPERFAMILY SSF47384 269 347 6.67E-17 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 Gene3D G3DSA:1.10.287.970 1 89 1.7E-38 T 15-10-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 3.4E-14 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 Pfam PF00072 Response regulator receiver domain 528 639 2.3E-22 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 Pfam PF01627 Hpt domain 687 770 2.6E-14 T 15-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 SUPERFAMILY SSF55874 336 505 7.86E-40 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 Pfam PF00989 PAS fold 157 266 4.6E-17 T 15-10-2018 IPR013767 PAS fold GO:0006355 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 SUPERFAMILY SSF52172 526 660 1.57E-30 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 Gene3D G3DSA:3.30.565.10 348 508 2.8E-41 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 SMART SM00448 526 639 2.7E-28 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 Gene3D G3DSA:3.40.50.2300 509 650 4.1E-34 T 15-10-2018 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 SUPERFAMILY SSF55785 143 267 1.31E-21 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 Gene3D G3DSA:1.20.120.160 656 779 7.9E-32 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 Gene3D G3DSA:1.10.287.130 268 345 2.0E-21 T 15-10-2018 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 SMART SM00387 394 507 1.9E-34 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 3.1E-14 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 445 3.1E-14 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 459 3.1E-14 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_08295 ac875ede429a325cd25fa24b5e16b3cd 779 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 504 3.1E-14 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_16505 15ae280097be13a0480d42dfa13aa773 212 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 198 5.1E-64 T 15-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 NJ56_16505 15ae280097be13a0480d42dfa13aa773 212 SUPERFAMILY SSF52540 1 205 1.95E-54 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16505 15ae280097be13a0480d42dfa13aa773 212 Hamap MF_00165 Thymidylate kinase [tmk]. 4 206 28.377 T 15-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 NJ56_16505 15ae280097be13a0480d42dfa13aa773 212 Gene3D G3DSA:3.40.50.300 1 208 9.6E-63 T 15-10-2018 NJ56_16505 15ae280097be13a0480d42dfa13aa773 212 ProSitePatterns PS01331 Thymidylate kinase signature. 95 107 - T 15-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 NJ56_16505 15ae280097be13a0480d42dfa13aa773 212 Pfam PF02223 Thymidylate kinase 8 198 1.4E-60 T 15-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 NJ56_05460 1cc49d684530fe3770869087f3b5c3e2 310 SUPERFAMILY SSF56752 6 307 1.57E-103 T 15-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 NJ56_05460 1cc49d684530fe3770869087f3b5c3e2 310 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 9 307 1.3E-140 T 15-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 NJ56_05460 1cc49d684530fe3770869087f3b5c3e2 310 Pfam PF01063 Amino-transferase class IV 35 268 2.1E-48 T 15-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 NJ56_05460 1cc49d684530fe3770869087f3b5c3e2 310 Gene3D G3DSA:3.30.470.10 9 127 5.7E-110 T 15-10-2018 NJ56_05460 1cc49d684530fe3770869087f3b5c3e2 310 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 223 - T 15-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 NJ56_05460 1cc49d684530fe3770869087f3b5c3e2 310 Gene3D G3DSA:3.20.10.10 138 289 5.7E-110 T 15-10-2018 NJ56_04375 08aad6d242c352bb23943c6d76e751f0 106 Pfam PF06755 CbtA_toxin of type IV toxin-antitoxin system 9 80 6.0E-17 T 15-10-2018 IPR009610 CbtA toxin of type IV toxin-antitoxin system NJ56_00140 16c0fb6ea78ee8fb30cdf60b49fa5804 423 SUPERFAMILY SSF53383 1 422 5.47E-137 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_00140 16c0fb6ea78ee8fb30cdf60b49fa5804 423 Pfam PF00202 Aminotransferase class-III 27 420 5.1E-129 T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_00140 16c0fb6ea78ee8fb30cdf60b49fa5804 423 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 242 279 - T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_00140 16c0fb6ea78ee8fb30cdf60b49fa5804 423 Gene3D G3DSA:3.40.640.10 61 330 6.6E-173 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_00140 16c0fb6ea78ee8fb30cdf60b49fa5804 423 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 423 50.291 T 15-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 NJ56_00140 16c0fb6ea78ee8fb30cdf60b49fa5804 423 PIRSF PIRSF000521 27 423 2.3E-28 T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_00140 16c0fb6ea78ee8fb30cdf60b49fa5804 423 Gene3D G3DSA:3.90.1150.10 10 414 6.6E-173 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_00140 16c0fb6ea78ee8fb30cdf60b49fa5804 423 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 13 421 3.5E-185 T 15-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 SMART SM00766 450 575 5.0E-55 T 15-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 Pfam PF08278 DNA primase DnaG DnaB-binding 451 574 7.3E-35 T 15-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 Gene3D G3DSA:1.10.860.10 434 581 7.8E-53 T 15-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 Pfam PF10410 DnaB-helicase binding domain of primase 370 424 1.2E-12 T 15-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 251 8.3E-43 T 15-10-2018 IPR013264 DNA primase, catalytic core, N-terminal NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 SMART SM00400 36 90 9.7E-37 T 15-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 SUPERFAMILY SSF57783 4 100 1.87E-35 T 15-10-2018 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 Gene3D G3DSA:3.40.1360.10 241 367 1.5E-43 T 15-10-2018 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 TIGRFAM TIGR01391 dnaG: DNA primase 4 419 6.2E-150 T 15-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 PIRSF PIRSF002811 2 581 2.7E-145 T 15-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 Gene3D G3DSA:3.90.580.10 1 101 1.2E-37 T 15-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 Pfam PF01807 CHC2 zinc finger 7 100 1.2E-40 T 15-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 Pfam PF13155 Toprim-like 263 348 2.5E-14 T 15-10-2018 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 SUPERFAMILY SSF117023 447 578 5.75E-46 T 15-10-2018 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 Gene3D G3DSA:1.20.50.20 368 426 1.6E-29 T 15-10-2018 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 Gene3D G3DSA:3.90.980.10 115 240 4.7E-47 T 15-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 Hamap MF_00974 DNA primase [dnaG]. 4 576 30.246 T 15-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 SUPERFAMILY SSF56731 116 427 4.32E-114 T 15-10-2018 NJ56_08635 9bcd8023aedf83d854d332ad18a7dec7 582 SMART SM00493 259 330 1.1E-21 T 15-10-2018 IPR006171 TOPRIM domain NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 SUPERFAMILY SSF50249 9 174 7.88E-43 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 Pfam PF00271 Helicase conserved C-terminal domain 481 588 2.0E-17 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 Gene3D G3DSA:3.40.50.300 457 630 1.7E-51 T 15-10-2018 NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 29 664 1.4E-244 T 15-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 Gene3D G3DSA:2.40.50.140 47 141 5.5E-13 T 15-10-2018 NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 SUPERFAMILY SSF52540 208 453 7.44E-59 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 SUPERFAMILY SSF52540 292 653 3.55E-45 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 SMART SM00490 505 589 1.7E-22 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 Pfam PF17191 RecG wedge domain 14 171 1.1E-20 T 15-10-2018 IPR033454 RecG, wedge domain NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 SMART SM00487 265 459 2.7E-31 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 Gene3D G3DSA:3.40.50.300 208 450 7.7E-82 T 15-10-2018 NJ56_06010 bec1a044c2ce2ce63304c99b3c14d360 693 Pfam PF00270 DEAD/DEAH box helicase 291 431 2.1E-19 T 15-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NJ56_09235 444f1d52fb351a4727d53b1ecc844bb6 413 Gene3D G3DSA:3.40.50.720 14 312 2.6E-110 T 15-10-2018 NJ56_09235 444f1d52fb351a4727d53b1ecc844bb6 413 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 6.2E-37 T 15-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 NJ56_09235 444f1d52fb351a4727d53b1ecc844bb6 413 SUPERFAMILY SSF55021 339 412 6.87E-18 T 15-10-2018 NJ56_09235 444f1d52fb351a4727d53b1ecc844bb6 413 Gene3D G3DSA:3.40.50.720 109 297 2.6E-110 T 15-10-2018 NJ56_09235 444f1d52fb351a4727d53b1ecc844bb6 413 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 15-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site NJ56_09235 444f1d52fb351a4727d53b1ecc844bb6 413 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 294 9.1E-52 T 15-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 NJ56_09235 444f1d52fb351a4727d53b1ecc844bb6 413 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 15-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site NJ56_09235 444f1d52fb351a4727d53b1ecc844bb6 413 Gene3D G3DSA:3.30.70.260 328 412 1.5E-31 T 15-10-2018 NJ56_09235 444f1d52fb351a4727d53b1ecc844bb6 413 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 15-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 NJ56_09235 444f1d52fb351a4727d53b1ecc844bb6 413 SUPERFAMILY SSF51735 108 295 3.7E-58 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_09235 444f1d52fb351a4727d53b1ecc844bb6 413 SUPERFAMILY SSF52283 7 135 1.11E-47 T 15-10-2018 NJ56_00475 0985e020e80a21eca8a3aec5b19dc480 177 Pfam PF03925 SeqA protein C-terminal domain 67 175 3.3E-47 T 15-10-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 NJ56_00475 0985e020e80a21eca8a3aec5b19dc480 177 PIRSF PIRSF019401 55 177 1.8E-30 T 15-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 NJ56_00475 0985e020e80a21eca8a3aec5b19dc480 177 PIRSF PIRSF019401 1 64 2.4E-17 T 15-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 NJ56_00475 0985e020e80a21eca8a3aec5b19dc480 177 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 177 42.313 T 15-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 NJ56_00475 0985e020e80a21eca8a3aec5b19dc480 177 SUPERFAMILY SSF82808 62 177 9.02E-48 T 15-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 NJ56_00475 0985e020e80a21eca8a3aec5b19dc480 177 Gene3D G3DSA:1.10.1220.10 1 40 7.1E-25 T 15-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 NJ56_00475 0985e020e80a21eca8a3aec5b19dc480 177 SUPERFAMILY SSF47598 1 35 6.67E-14 T 15-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 NJ56_00475 0985e020e80a21eca8a3aec5b19dc480 177 Pfam PF17206 SeqA protein N-terminal domain 1 36 6.4E-25 T 15-10-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal NJ56_00475 0985e020e80a21eca8a3aec5b19dc480 177 Gene3D G3DSA:1.20.1380.10 64 177 4.8E-45 T 15-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 NJ56_16490 75f9c50ea044fa66634f1b8527024479 477 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 52 331 7.3E-89 T 15-10-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 NJ56_16490 75f9c50ea044fa66634f1b8527024479 477 Gene3D G3DSA:3.30.1360.60 397 477 3.0E-31 T 15-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 NJ56_16490 75f9c50ea044fa66634f1b8527024479 477 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 475 4.8E-229 T 15-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 NJ56_16490 75f9c50ea044fa66634f1b8527024479 477 Pfam PF00367 phosphotransferase system, EIIB 404 436 2.1E-14 T 15-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 NJ56_16490 75f9c50ea044fa66634f1b8527024479 477 Pfam PF02378 Phosphotransferase system, EIIC 13 320 1.5E-84 T 15-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 NJ56_16490 75f9c50ea044fa66634f1b8527024479 477 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 414 431 - T 15-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 NJ56_16490 75f9c50ea044fa66634f1b8527024479 477 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 378 460 1.6E-25 T 15-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 NJ56_16490 75f9c50ea044fa66634f1b8527024479 477 SUPERFAMILY SSF55604 401 474 1.07E-20 T 15-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 NJ56_10360 e206d69c3bf677fda7ffacd7e040864c 226 Gene3D G3DSA:1.10.1520.10 4 148 1.3E-44 T 15-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 NJ56_10360 e206d69c3bf677fda7ffacd7e040864c 226 Pfam PF14622 Ribonuclease-III-like 20 140 3.0E-34 T 15-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 NJ56_10360 e206d69c3bf677fda7ffacd7e040864c 226 SUPERFAMILY SSF54768 109 223 2.99E-27 T 15-10-2018 NJ56_10360 e206d69c3bf677fda7ffacd7e040864c 226 ProSitePatterns PS00517 Ribonuclease III family signature. 38 46 - T 15-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 NJ56_10360 e206d69c3bf677fda7ffacd7e040864c 226 Hamap MF_00104 Ribonuclease 3 [rnc]. 9 220 29.891 T 15-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 NJ56_10360 e206d69c3bf677fda7ffacd7e040864c 226 SUPERFAMILY SSF69065 5 159 1.29E-49 T 15-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 NJ56_10360 e206d69c3bf677fda7ffacd7e040864c 226 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 223 5.2E-74 T 15-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 NJ56_10360 e206d69c3bf677fda7ffacd7e040864c 226 SMART SM00358 156 224 2.2E-23 T 15-10-2018 IPR014720 Double-stranded RNA-binding domain NJ56_10360 e206d69c3bf677fda7ffacd7e040864c 226 Pfam PF00035 Double-stranded RNA binding motif 156 223 2.7E-14 T 15-10-2018 IPR014720 Double-stranded RNA-binding domain NJ56_10360 e206d69c3bf677fda7ffacd7e040864c 226 Gene3D G3DSA:3.30.160.20 154 224 2.6E-20 T 15-10-2018 NJ56_10360 e206d69c3bf677fda7ffacd7e040864c 226 SMART SM00535 21 149 8.7E-59 T 15-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 SUPERFAMILY SSF55307 203 319 2.98E-42 T 15-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 SMART SM00865 206 324 8.3E-56 T 15-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 PRINTS PR00423 Cell division protein FtsZ signature 188 210 1.4E-51 T 15-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 PRINTS PR00423 Cell division protein FtsZ signature 97 117 1.4E-51 T 15-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 PRINTS PR00423 Cell division protein FtsZ signature 211 232 1.4E-51 T 15-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 PRINTS PR00423 Cell division protein FtsZ signature 125 146 1.4E-51 T 15-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 172 2.0E-41 T 15-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 SMART SM00864 12 204 6.1E-112 T 15-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 SUPERFAMILY SSF52490 12 207 1.44E-69 T 15-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 ProSitePatterns PS01135 FtsZ protein signature 2. 96 117 - T 15-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 Pfam PF12327 FtsZ family, C-terminal domain 221 315 5.7E-37 T 15-10-2018 IPR024757 Cell division protein FtsZ, C-terminal NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 8 343 38.078 T 15-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 337 8.9E-142 T 15-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 ProSitePatterns PS01134 FtsZ protein signature 1. 43 77 - T 15-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 NJ56_02690 04540c7864443c75f6079c38d79e40d6 383 Gene3D G3DSA:3.40.50.1440 9 316 1.9E-116 T 15-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 Gene3D G3DSA:3.40.50.720 2 191 8.5E-55 T 15-10-2018 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 326 38.088 T 15-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 8 163 7.1E-50 T 15-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 PIRSF PIRSF000114 1 336 1.9E-100 T 15-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 SUPERFAMILY SSF51735 8 182 9.43E-52 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 8.3E-42 T 15-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 8.3E-42 T 15-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 202 226 8.3E-42 T 15-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 8.3E-42 T 15-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 177 201 8.3E-42 T 15-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 8.3E-42 T 15-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 192 213 - T 15-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 184 323 8.2E-53 T 15-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 Gene3D G3DSA:1.10.1040.10 193 338 3.2E-53 T 15-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NJ56_05815 ad6fe899e9530a9ea5c25d612b55276b 339 SUPERFAMILY SSF48179 184 335 5.5E-58 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_15165 d093f04b8b38f4b28a4a788c631c55f2 238 PIRSF PIRSF006102 1 219 8.3E-77 T 15-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 NJ56_15165 d093f04b8b38f4b28a4a788c631c55f2 238 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 7 208 1.0E-84 T 15-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 NJ56_15165 d093f04b8b38f4b28a4a788c631c55f2 238 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 199 1.5E-63 T 15-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 NJ56_15165 d093f04b8b38f4b28a4a788c631c55f2 238 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 210 28.288 T 15-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 NJ56_10485 63cca6225b530d8b1e7f94fba5d374d7 299 Gene3D G3DSA:3.40.190.10 91 299 2.5E-68 T 15-10-2018 NJ56_10485 63cca6225b530d8b1e7f94fba5d374d7 299 Pfam PF14503 YhfZ C-terminal domain 77 299 3.2E-83 T 15-10-2018 IPR032791 Uncharacterised protein YhfZ, C-terminal domain NJ56_10485 63cca6225b530d8b1e7f94fba5d374d7 299 SUPERFAMILY SSF53850 74 299 5.61E-84 T 15-10-2018 NJ56_10485 63cca6225b530d8b1e7f94fba5d374d7 299 Gene3D G3DSA:1.10.10.10 18 76 1.3E-9 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_10485 63cca6225b530d8b1e7f94fba5d374d7 299 SUPERFAMILY SSF46785 24 75 4.91E-7 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_10485 63cca6225b530d8b1e7f94fba5d374d7 299 Pfam PF14502 Helix-turn-helix domain 25 71 1.2E-22 T 15-10-2018 NJ56_10485 63cca6225b530d8b1e7f94fba5d374d7 299 Gene3D G3DSA:3.40.190.10 167 256 2.5E-68 T 15-10-2018 NJ56_15500 a454ca4fe28ea434ee9a8bf87792b26f 134 Pfam PF00816 H-NS histone family 32 126 7.5E-20 T 15-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 NJ56_15500 a454ca4fe28ea434ee9a8bf87792b26f 134 SMART SM00528 86 134 9.4E-24 T 15-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 NJ56_15500 a454ca4fe28ea434ee9a8bf87792b26f 134 SUPERFAMILY SSF81273 2 58 8.44E-18 T 15-10-2018 NJ56_15500 a454ca4fe28ea434ee9a8bf87792b26f 134 SUPERFAMILY SSF81273 92 134 7.85E-12 T 15-10-2018 NJ56_15500 a454ca4fe28ea434ee9a8bf87792b26f 134 PIRSF PIRSF002096 1 134 3.2E-57 T 15-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 NJ56_15500 a454ca4fe28ea434ee9a8bf87792b26f 134 Gene3D G3DSA:1.10.287.1050 1 83 1.7E-36 T 15-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 NJ56_15500 a454ca4fe28ea434ee9a8bf87792b26f 134 Gene3D G3DSA:4.10.430.10 90 134 2.9E-25 T 15-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 NJ56_14175 f4a6cd3b326df4ea8bb91694415ab6c3 184 Pfam PF14002 YniB-like protein 15 179 5.4E-80 T 15-10-2018 IPR025229 YniB-like protein NJ56_14175 f4a6cd3b326df4ea8bb91694415ab6c3 184 ProDom PD035714 MEMBRANE REGULATOR YNIB TRANSMEMBRANE YFEABCD YFEE PROBABLE LOCUS ESCHERICHIA ECS2432 1 181 1.0E-82 T 15-10-2018 NJ56_07830 d6f9c657ef210e62182fd4b6d1aa0d04 818 Pfam PF01553 Acyltransferase 281 423 4.2E-26 T 15-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 NJ56_07830 d6f9c657ef210e62182fd4b6d1aa0d04 818 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 798 0.0 T 15-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 NJ56_07830 d6f9c657ef210e62182fd4b6d1aa0d04 818 PIRSF PIRSF500064 2 814 0.0 T 15-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 NJ56_07830 d6f9c657ef210e62182fd4b6d1aa0d04 818 SUPERFAMILY SSF69593 240 489 1.44E-25 T 15-10-2018 NJ56_07830 d6f9c657ef210e62182fd4b6d1aa0d04 818 SMART SM00563 299 426 6.3E-28 T 15-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 NJ56_07830 d6f9c657ef210e62182fd4b6d1aa0d04 818 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 806 32.583 T 15-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 NJ56_07830 d6f9c657ef210e62182fd4b6d1aa0d04 818 PIRSF PIRSF000437 19 812 0.0 T 15-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 Pfam PF00005 ABC transporter 623 860 5.3E-9 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 Gene3D G3DSA:1.20.1580.10 693 830 1.7E-138 T 15-10-2018 NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 4 925 0.0 T 15-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 Gene3D G3DSA:3.40.50.300 614 936 1.7E-138 T 15-10-2018 NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 22.976 T 15-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 Gene3D G3DSA:3.40.50.300 6 595 2.0E-245 T 15-10-2018 NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 Gene3D G3DSA:1.10.8.280 287 403 2.0E-245 T 15-10-2018 NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 SUPERFAMILY SSF52540 619 911 3.36E-52 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 SUPERFAMILY SSF52540 1 569 2.21E-44 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 Gene3D G3DSA:1.20.1580.10 90 492 2.0E-245 T 15-10-2018 NJ56_07885 0dbde0867101dbc24e73f93d0e8722c1 944 Gene3D G3DSA:3.30.190.20 130 239 2.0E-245 T 15-10-2018 NJ56_08720 a02ec19932b5f6f960b127c23bf5adcf 488 SUPERFAMILY SSF56954 25 438 7.19E-93 T 15-10-2018 NJ56_08720 a02ec19932b5f6f960b127c23bf5adcf 488 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 438 4.6E-130 T 15-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 NJ56_08720 a02ec19932b5f6f960b127c23bf5adcf 488 Gene3D G3DSA:1.20.1600.10 23 446 6.9E-148 T 15-10-2018 NJ56_08720 a02ec19932b5f6f960b127c23bf5adcf 488 Pfam PF02321 Outer membrane efflux protein 25 209 1.4E-27 T 15-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 NJ56_08720 a02ec19932b5f6f960b127c23bf5adcf 488 Pfam PF02321 Outer membrane efflux protein 232 423 2.3E-33 T 15-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SUPERFAMILY SSF47384 757 837 2.94E-21 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SUPERFAMILY SSF47226 1270 1414 1.16E-16 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Gene3D G3DSA:3.30.565.10 837 1000 5.2E-47 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SUPERFAMILY SSF55874 824 994 4.19E-41 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Gene3D G3DSA:1.20.120.160 1318 1429 2.6E-17 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Pfam PF00512 His Kinase A (phospho-acceptor) domain 770 835 2.1E-18 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SUPERFAMILY SSF52172 1021 1150 7.12E-24 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Pfam PF13426 PAS domain 518 620 1.1E-14 T 15-10-2018 IPR000014 PAS domain NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Pfam PF13426 PAS domain 389 492 1.7E-17 T 15-10-2018 IPR000014 PAS domain NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM00086 451 493 1.1E-8 T 15-10-2018 IPR001610 PAC motif NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM00086 709 750 0.13 T 15-10-2018 IPR001610 PAC motif NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM00086 579 621 1.2E-7 T 15-10-2018 IPR001610 PAC motif NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SUPERFAMILY SSF55785 516 618 2.97E-26 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SUPERFAMILY SSF55785 641 753 3.05E-12 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 882 996 1.1E-25 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Gene3D G3DSA:3.30.450.20 517 644 5.0E-32 T 15-10-2018 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Gene3D G3DSA:3.30.450.20 374 516 1.1E-36 T 15-10-2018 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Gene3D G3DSA:1.10.287.130 756 836 3.4E-26 T 15-10-2018 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM00448 1024 1145 3.9E-22 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM00448 1172 1287 2.1E-36 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SUPERFAMILY SSF55785 386 493 3.84E-25 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Pfam PF03924 CHASE domain 93 277 3.8E-43 T 15-10-2018 IPR006189 CHASE domain NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Gene3D G3DSA:3.30.450.350 94 297 1.1E-26 T 15-10-2018 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Pfam PF08447 PAS fold 671 744 2.2E-10 T 15-10-2018 IPR013655 PAS fold-3 GO:0005515 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM01079 90 282 1.3E-50 T 15-10-2018 IPR006189 CHASE domain NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SUPERFAMILY SSF52172 1170 1293 2.42E-37 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM00387 882 998 4.7E-31 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM00091 505 573 0.0013 T 15-10-2018 IPR000014 PAS domain NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM00091 378 445 2.0E-7 T 15-10-2018 IPR000014 PAS domain NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM00091 633 703 79.0 T 15-10-2018 IPR000014 PAS domain NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 941 951 2.1E-11 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 982 995 2.1E-11 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 923 937 2.1E-11 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 958 976 2.1E-11 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Gene3D G3DSA:3.40.50.2300 1016 1155 5.0E-25 T 15-10-2018 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Gene3D G3DSA:3.40.50.2300 1161 1298 3.0E-40 T 15-10-2018 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Pfam PF00072 Response regulator receiver domain 1026 1144 9.3E-16 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Pfam PF00072 Response regulator receiver domain 1175 1287 2.4E-26 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM00073 1329 1430 0.0083 T 15-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Gene3D G3DSA:3.30.450.20 645 755 1.3E-14 T 15-10-2018 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 SMART SM00388 770 835 1.7E-22 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 377 500 9.7E-21 T 15-10-2018 IPR000014 PAS domain NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 519 627 7.2E-17 T 15-10-2018 IPR000014 PAS domain NJ56_00775 b2ac41eae626c12dcd6ac9a6d2bc65c7 1522 Pfam PF01627 Hpt domain 1340 1415 1.6E-8 T 15-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 NJ56_04965 41d8f9565d6c13a89a34224e71f90a73 253 Gene3D G3DSA:3.40.50.1580 1 253 3.1E-81 T 15-10-2018 NJ56_04965 41d8f9565d6c13a89a34224e71f90a73 253 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 66 81 - T 15-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_04965 41d8f9565d6c13a89a34224e71f90a73 253 Pfam PF01048 Phosphorylase superfamily 21 244 1.5E-40 T 15-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 NJ56_04965 41d8f9565d6c13a89a34224e71f90a73 253 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 6 253 1.9E-127 T 15-10-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 NJ56_04965 41d8f9565d6c13a89a34224e71f90a73 253 SUPERFAMILY SSF53167 6 250 2.88E-74 T 15-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 NJ56_15765 9d156adb57b46ade0c0b4e12b5aa405b 232 SUPERFAMILY SSF53067 5 104 8.2E-30 T 15-10-2018 NJ56_15765 9d156adb57b46ade0c0b4e12b5aa405b 232 Gene3D G3DSA:3.30.420.40 5 224 6.7E-85 T 15-10-2018 NJ56_15765 9d156adb57b46ade0c0b4e12b5aa405b 232 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 221 1.5E-69 T 15-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 NJ56_15765 9d156adb57b46ade0c0b4e12b5aa405b 232 Pfam PF00814 Glycoprotease family 30 150 4.2E-29 T 15-10-2018 IPR000905 Gcp-like domain NJ56_15765 9d156adb57b46ade0c0b4e12b5aa405b 232 SUPERFAMILY SSF53067 110 219 1.14E-29 T 15-10-2018 NJ56_15765 9d156adb57b46ade0c0b4e12b5aa405b 232 Gene3D G3DSA:3.30.420.40 96 190 6.7E-85 T 15-10-2018 NJ56_11035 f5042baa076255dcd875a958370279f4 97 SUPERFAMILY SSF47413 15 86 2.52E-13 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_11035 f5042baa076255dcd875a958370279f4 97 Gene3D G3DSA:1.10.260.40 1 93 4.3E-17 T 15-10-2018 NJ56_11035 f5042baa076255dcd875a958370279f4 97 Pfam PF01381 Helix-turn-helix 17 69 2.7E-5 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_15740 5721898a8c5f4a0c12f1cb629cdebdcc 270 PIRSF PIRSF003092 1 270 4.4E-97 T 15-10-2018 IPR025501 ATP binding protein MinD NJ56_15740 5721898a8c5f4a0c12f1cb629cdebdcc 270 SUPERFAMILY SSF52540 1 268 1.62E-53 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15740 5721898a8c5f4a0c12f1cb629cdebdcc 270 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 227 5.6E-20 T 15-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain NJ56_15740 5721898a8c5f4a0c12f1cb629cdebdcc 270 Gene3D G3DSA:3.40.50.300 1 260 2.4E-75 T 15-10-2018 NJ56_15740 5721898a8c5f4a0c12f1cb629cdebdcc 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 2.8E-110 T 15-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 SUPERFAMILY SSF55874 628 800 4.45E-41 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Gene3D G3DSA:3.40.190.10 136 229 4.2E-31 T 15-10-2018 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 SUPERFAMILY SSF53850 51 266 8.02E-20 T 15-10-2018 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 53 267 2.6E-10 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 SMART SM00388 576 639 6.7E-16 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Gene3D G3DSA:3.40.190.10 51 266 4.2E-31 T 15-10-2018 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Gene3D G3DSA:3.40.50.2300 823 951 6.2E-23 T 15-10-2018 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Gene3D G3DSA:1.10.287.130 548 637 1.4E-19 T 15-10-2018 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Gene3D G3DSA:3.40.190.10 285 508 3.9E-43 T 15-10-2018 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 PRINTS PR00344 Bacterial sensor protein C-terminal signature 786 799 2.9E-16 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 PRINTS PR00344 Bacterial sensor protein C-terminal signature 745 755 2.9E-16 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 PRINTS PR00344 Bacterial sensor protein C-terminal signature 727 741 2.9E-16 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 PRINTS PR00344 Bacterial sensor protein C-terminal signature 762 780 2.9E-16 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 SUPERFAMILY SSF53850 287 509 1.29E-31 T 15-10-2018 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 687 800 3.1E-28 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 SMART SM00062 52 270 9.7E-4 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 SMART SM00062 294 512 5.4E-11 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 SUPERFAMILY SSF47384 563 639 4.71E-16 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 SUPERFAMILY SSF47226 927 1039 1.21E-10 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 SMART SM00448 828 944 2.2E-15 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 SMART SM00387 686 802 1.7E-35 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Gene3D G3DSA:1.20.120.160 952 1061 6.2E-5 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Pfam PF00072 Response regulator receiver domain 830 943 9.0E-15 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Gene3D G3DSA:3.30.565.10 638 804 3.7E-43 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Pfam PF00512 His Kinase A (phospho-acceptor) domain 577 639 4.6E-15 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Gene3D G3DSA:3.40.190.10 380 471 3.9E-43 T 15-10-2018 NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 299 509 7.2E-24 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_00225 1140a245cea8d85a0342a0b9dfaeed74 1063 SUPERFAMILY SSF52172 825 945 8.82E-24 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_13850 1d5021f260a783fd26ca8ae6972b72e1 38 Pfam PF10736 Protein of unknown function (DUF2627) 1 38 3.9E-29 T 15-10-2018 IPR019672 Protein of unknown function DUF2627 NJ56_06200 107c3980fafb4b5da44fb5f8638ef776 330 Pfam PF03590 Aspartate-ammonia ligase 9 244 6.4E-94 T 15-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 NJ56_06200 107c3980fafb4b5da44fb5f8638ef776 330 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 1 330 45.286 T 15-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 NJ56_06200 107c3980fafb4b5da44fb5f8638ef776 330 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 1 330 6.0E-185 T 15-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 NJ56_06200 107c3980fafb4b5da44fb5f8638ef776 330 SUPERFAMILY SSF55681 5 325 2.03E-96 T 15-10-2018 NJ56_06200 107c3980fafb4b5da44fb5f8638ef776 330 PIRSF PIRSF001555 1 329 1.1E-153 T 15-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 NJ56_06200 107c3980fafb4b5da44fb5f8638ef776 330 Gene3D G3DSA:3.30.930.10 1 330 5.7E-142 T 15-10-2018 NJ56_02870 4570121ecff191a1cf05bcd46d4c3b5a 217 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 58 72 - T 15-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_02870 4570121ecff191a1cf05bcd46d4c3b5a 217 Pfam PF00849 RNA pseudouridylate synthase 20 167 2.2E-27 T 15-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_02870 4570121ecff191a1cf05bcd46d4c3b5a 217 SUPERFAMILY SSF55120 6 214 7.84E-61 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_02870 4570121ecff191a1cf05bcd46d4c3b5a 217 Gene3D G3DSA:3.30.2350.10 2 217 1.1E-71 T 15-10-2018 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 9 26 - T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 Gene3D G3DSA:3.50.50.60 5 366 8.5E-147 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 Gene3D G3DSA:1.10.8.870 391 460 4.7E-27 T 15-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 SUPERFAMILY SSF51905 1 375 5.18E-35 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 Pfam PF01266 FAD dependent oxidoreductase 5 323 1.1E-49 T 15-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 313 319 4.8E-28 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 33 45 4.8E-28 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 17 27 4.8E-28 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 78 90 4.8E-28 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 4.8E-28 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 4 16 4.8E-28 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 SUPERFAMILY SSF54373 226 319 3.34E-7 T 15-10-2018 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 Gene3D G3DSA:3.30.9.10 82 320 8.5E-147 T 15-10-2018 NJ56_06930 8b79e6694c6f20797e6ae0063c94ca67 504 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 381 483 3.3E-12 T 15-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_14600 a565adbaa1fca124e7e567eec6a47c9f 155 Pfam PF05433 Glycine zipper 2TM domain 62 103 8.3E-9 T 15-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 NJ56_04305 cef9432eabe707889d569f5d3a9f763f 410 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 14 393 1.5E-52 T 15-10-2018 IPR003776 YcaO-like domain NJ56_04305 cef9432eabe707889d569f5d3a9f763f 410 Gene3D G3DSA:1.10.490.140 134 248 2.1E-7 T 15-10-2018 NJ56_04305 cef9432eabe707889d569f5d3a9f763f 410 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 62 382 4.7E-48 T 15-10-2018 IPR003776 YcaO-like domain NJ56_14080 77d6a4698eb1315edc53c3281f1757cf 118 Pfam PF16068 Domain of unknown function (DUF4810) 26 109 5.1E-33 T 15-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats NJ56_14080 77d6a4698eb1315edc53c3281f1757cf 118 Gene3D G3DSA:1.25.40.10 20 111 2.1E-5 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_14080 77d6a4698eb1315edc53c3281f1757cf 118 PIRSF PIRSF020555 1 118 1.9E-44 T 15-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats NJ56_05620 d5121989aea4d708bd86a6de887a9fa7 404 Gene3D G3DSA:1.20.5.470 369 403 3.6E-7 T 15-10-2018 NJ56_05620 d5121989aea4d708bd86a6de887a9fa7 404 SUPERFAMILY SSF69864 177 403 3.66E-87 T 15-10-2018 NJ56_05620 d5121989aea4d708bd86a6de887a9fa7 404 Gene3D G3DSA:3.40.50.620 9 178 1.5E-143 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_05620 d5121989aea4d708bd86a6de887a9fa7 404 Pfam PF00764 Arginosuccinate synthase 10 397 2.2E-142 T 15-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 NJ56_05620 d5121989aea4d708bd86a6de887a9fa7 404 Hamap MF_00005 Argininosuccinate synthase [argG]. 6 403 50.681 T 15-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 NJ56_05620 d5121989aea4d708bd86a6de887a9fa7 404 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 122 133 - T 15-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 NJ56_05620 d5121989aea4d708bd86a6de887a9fa7 404 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 12 20 - T 15-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 NJ56_05620 d5121989aea4d708bd86a6de887a9fa7 404 SUPERFAMILY SSF52402 8 172 1.02E-44 T 15-10-2018 NJ56_05620 d5121989aea4d708bd86a6de887a9fa7 404 TIGRFAM TIGR00032 argG: argininosuccinate synthase 8 396 8.1E-136 T 15-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 NJ56_05620 d5121989aea4d708bd86a6de887a9fa7 404 Gene3D G3DSA:3.90.1260.10 69 357 1.5E-143 T 15-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 NJ56_04335 1659ba69a4b6eca2130aa59a42a59deb 308 Gene3D G3DSA:2.60.120.650 2 235 3.2E-39 T 15-10-2018 NJ56_04335 1659ba69a4b6eca2130aa59a42a59deb 308 Pfam PF08007 Cupin superfamily protein 43 281 2.7E-28 T 15-10-2018 IPR003347 JmjC domain NJ56_04335 1659ba69a4b6eca2130aa59a42a59deb 308 SUPERFAMILY SSF51197 87 279 2.06E-33 T 15-10-2018 NJ56_09795 d03291ab0c9ad2eb4a17085fec452aa0 105 Gene3D G3DSA:1.10.760.10 22 105 2.9E-26 T 15-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 NJ56_09795 d03291ab0c9ad2eb4a17085fec452aa0 105 SUPERFAMILY SSF46626 33 104 6.92E-22 T 15-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 NJ56_09795 d03291ab0c9ad2eb4a17085fec452aa0 105 Pfam PF00034 Cytochrome c 28 104 1.4E-9 T 15-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_16605 ae5d61d8e482516d213dacbf96d46267 371 SUPERFAMILY SSF51905 2 370 3.7E-44 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_16605 ae5d61d8e482516d213dacbf96d46267 371 Hamap MF_00515 N-methyl-L-tryptophan oxidase [solA]. 1 371 73.915 T 15-10-2018 IPR023493 N-methyl-L-tryptophan oxidase MTOX GO:0050131|GO:0050660|GO:0055114 NJ56_16605 ae5d61d8e482516d213dacbf96d46267 371 Pfam PF01266 FAD dependent oxidoreductase 4 350 2.5E-45 T 15-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 NJ56_16605 ae5d61d8e482516d213dacbf96d46267 371 Gene3D G3DSA:3.50.50.60 4 367 2.1E-126 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_16605 ae5d61d8e482516d213dacbf96d46267 371 SUPERFAMILY SSF54373 213 313 3.3E-19 T 15-10-2018 NJ56_16605 ae5d61d8e482516d213dacbf96d46267 371 Gene3D G3DSA:3.30.9.10 59 313 2.1E-126 T 15-10-2018 NJ56_13265 97a822ae2d2ff70fe2b872177522a3fa 389 Pfam PF17482 Phage tail sheath C-terminal domain 274 376 6.1E-16 T 15-10-2018 IPR020287 Tail sheath protein, C-terminal domain NJ56_13265 97a822ae2d2ff70fe2b872177522a3fa 389 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 107 273 3.7E-32 T 15-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain NJ56_16910 e83fe07b65615b724b872aa215afc5fa 764 Pfam PF00753 Metallo-beta-lactamase superfamily 512 691 7.5E-16 T 15-10-2018 IPR001279 Metallo-beta-lactamase NJ56_16910 e83fe07b65615b724b872aa215afc5fa 764 SUPERFAMILY SSF56281 501 752 5.11E-45 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_16910 e83fe07b65615b724b872aa215afc5fa 764 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 105 728 4.8E-181 T 15-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 NJ56_16910 e83fe07b65615b724b872aa215afc5fa 764 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 228 412 3.5E-40 T 15-10-2018 IPR004477 ComEC/Rec2-related protein NJ56_16910 e83fe07b65615b724b872aa215afc5fa 764 SMART SM00849 512 699 8.4E-10 T 15-10-2018 IPR001279 Metallo-beta-lactamase NJ56_16910 e83fe07b65615b724b872aa215afc5fa 764 Pfam PF03772 Competence protein 207 476 1.9E-54 T 15-10-2018 IPR004477 ComEC/Rec2-related protein NJ56_16910 e83fe07b65615b724b872aa215afc5fa 764 Gene3D G3DSA:3.60.15.10 501 741 1.6E-48 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_16910 e83fe07b65615b724b872aa215afc5fa 764 Pfam PF13567 Domain of unknown function (DUF4131) 27 160 1.5E-12 T 15-10-2018 IPR025405 Domain of unknown function DUF4131 NJ56_10885 2f0cc3cea5e70ec6077e46baa90769b2 189 SUPERFAMILY SSF55021 91 179 1.5E-18 T 15-10-2018 NJ56_10885 2f0cc3cea5e70ec6077e46baa90769b2 189 Gene3D G3DSA:3.30.70.260 5 88 2.9E-25 T 15-10-2018 NJ56_10885 2f0cc3cea5e70ec6077e46baa90769b2 189 PIRSF PIRSF028103 5 180 7.1E-65 T 15-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 NJ56_10885 2f0cc3cea5e70ec6077e46baa90769b2 189 Gene3D G3DSA:3.30.70.260 91 188 2.3E-32 T 15-10-2018 NJ56_10885 2f0cc3cea5e70ec6077e46baa90769b2 189 SUPERFAMILY SSF55021 7 85 1.04E-16 T 15-10-2018 NJ56_10885 2f0cc3cea5e70ec6077e46baa90769b2 189 Pfam PF13740 ACT domain 7 82 5.4E-26 T 15-10-2018 NJ56_12755 15d0b8313500bc6542187c37295f4370 232 PRINTS PR01837 MgtC/SapB protein signature 32 50 1.6E-45 T 15-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 NJ56_12755 15d0b8313500bc6542187c37295f4370 232 PRINTS PR01837 MgtC/SapB protein signature 13 32 1.6E-45 T 15-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 NJ56_12755 15d0b8313500bc6542187c37295f4370 232 PRINTS PR01837 MgtC/SapB protein signature 57 79 1.6E-45 T 15-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 NJ56_12755 15d0b8313500bc6542187c37295f4370 232 PRINTS PR01837 MgtC/SapB protein signature 84 108 1.6E-45 T 15-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 NJ56_12755 15d0b8313500bc6542187c37295f4370 232 Pfam PF02308 MgtC family 10 128 2.2E-36 T 15-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 NJ56_12755 15d0b8313500bc6542187c37295f4370 232 Gene3D G3DSA:3.30.70.260 141 230 1.5E-13 T 15-10-2018 NJ56_05850 3644469d791972d8eb5d5c29002196f3 341 Gene3D G3DSA:3.90.180.10 21 328 2.8E-119 T 15-10-2018 NJ56_05850 3644469d791972d8eb5d5c29002196f3 341 SUPERFAMILY SSF50129 1 173 5.63E-53 T 15-10-2018 IPR011032 GroES-like superfamily NJ56_05850 3644469d791972d8eb5d5c29002196f3 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 8.2E-32 T 15-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 NJ56_05850 3644469d791972d8eb5d5c29002196f3 341 Gene3D G3DSA:3.40.50.720 153 286 2.8E-119 T 15-10-2018 NJ56_05850 3644469d791972d8eb5d5c29002196f3 341 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 340 3.4E-181 T 15-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 NJ56_05850 3644469d791972d8eb5d5c29002196f3 341 SUPERFAMILY SSF51735 141 305 2.72E-38 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_05850 3644469d791972d8eb5d5c29002196f3 341 SMART SM00829 12 338 1.0E-5 T 15-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 NJ56_05850 3644469d791972d8eb5d5c29002196f3 341 Pfam PF00107 Zinc-binding dehydrogenase 174 301 3.8E-28 T 15-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 NJ56_05850 3644469d791972d8eb5d5c29002196f3 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 15-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 NJ56_05850 3644469d791972d8eb5d5c29002196f3 341 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 340 60.374 T 15-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 NJ56_17495 064c62c35ed6da4d1fbeea0216396f98 735 SMART SM00491 545 677 5.1E-32 T 15-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 NJ56_17495 064c62c35ed6da4d1fbeea0216396f98 735 SUPERFAMILY SSF52540 47 670 1.27E-15 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17495 064c62c35ed6da4d1fbeea0216396f98 735 Pfam PF13307 Helicase C-terminal domain 535 688 5.8E-24 T 15-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 NJ56_17495 064c62c35ed6da4d1fbeea0216396f98 735 SMART SM00487 23 307 4.7E-4 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_17495 064c62c35ed6da4d1fbeea0216396f98 735 Gene3D G3DSA:3.40.50.300 505 690 1.2E-19 T 15-10-2018 NJ56_17495 064c62c35ed6da4d1fbeea0216396f98 735 Gene3D G3DSA:3.40.50.300 26 289 2.3E-39 T 15-10-2018 NJ56_17495 064c62c35ed6da4d1fbeea0216396f98 735 Pfam PF06733 DEAD_2 199 263 1.4E-7 T 15-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 NJ56_17495 064c62c35ed6da4d1fbeea0216396f98 735 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 34 696 34.372 T 15-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 NJ56_09145 4e4d56958d23d002053e397c31cf9e2c 243 Gene3D G3DSA:3.40.1280.10 74 243 1.7E-65 T 15-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NJ56_09145 4e4d56958d23d002053e397c31cf9e2c 243 Gene3D G3DSA:2.40.240.20 1 73 3.8E-23 T 15-10-2018 NJ56_09145 4e4d56958d23d002053e397c31cf9e2c 243 Pfam PF04452 RNA methyltransferase 20 236 8.9E-73 T 15-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 NJ56_09145 4e4d56958d23d002053e397c31cf9e2c 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 2.7E-88 T 15-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 NJ56_09145 4e4d56958d23d002053e397c31cf9e2c 243 SUPERFAMILY SSF75217 75 242 1.83E-51 T 15-10-2018 IPR029028 Alpha/beta knot methyltransferases NJ56_09145 4e4d56958d23d002053e397c31cf9e2c 243 SUPERFAMILY SSF88697 2 68 9.69E-17 T 15-10-2018 IPR015947 PUA-like superfamily NJ56_09145 4e4d56958d23d002053e397c31cf9e2c 243 PIRSF PIRSF015601 2 242 1.4E-53 T 15-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 NJ56_04020 f2f4d8648ff2cf64bb6486bed828c061 102 Gene3D G3DSA:3.30.1660.10 34 102 1.1E-14 T 15-10-2018 IPR025543 Dodecin-like NJ56_04020 f2f4d8648ff2cf64bb6486bed828c061 102 SUPERFAMILY SSF159871 5 102 1.26E-20 T 15-10-2018 IPR036275 YdgH-like superfamily NJ56_04020 f2f4d8648ff2cf64bb6486bed828c061 102 Pfam PF07338 Protein of unknown function (DUF1471) 47 102 3.6E-17 T 15-10-2018 IPR010854 Domain of unknown function DUF1471 NJ56_02295 e01636bc2293cbaf9ec66592e3caafb8 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 208 38.387 T 15-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 NJ56_02295 e01636bc2293cbaf9ec66592e3caafb8 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 2 206 3.3E-87 T 15-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 NJ56_02295 e01636bc2293cbaf9ec66592e3caafb8 208 SUPERFAMILY SSF53335 11 204 2.15E-46 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_02295 e01636bc2293cbaf9ec66592e3caafb8 208 Gene3D G3DSA:3.40.50.150 1 206 2.6E-77 T 15-10-2018 NJ56_02295 e01636bc2293cbaf9ec66592e3caafb8 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 15-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 NJ56_02295 e01636bc2293cbaf9ec66592e3caafb8 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 7 205 1.4E-75 T 15-10-2018 NJ56_15265 b64c9fda06c736f0fc319f2c6cee7f1c 83 Pfam PF10692 Protein of unknown function (DUF2498) 4 81 3.0E-43 T 15-10-2018 IPR019633 Protein of unknown function DUF2498 NJ56_15265 b64c9fda06c736f0fc319f2c6cee7f1c 83 Gene3D G3DSA:1.10.1900.30 9 77 7.4E-38 T 15-10-2018 IPR038191 YciN superfamily NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 Pfam PF01966 HD domain 470 603 6.9E-15 T 15-10-2018 IPR006674 HD domain NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 Gene3D G3DSA:1.10.3210.10 460 574 2.0E-7 T 15-10-2018 NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 SUPERFAMILY SSF81593 205 330 1.18E-11 T 15-10-2018 NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 51 886 4.7E-302 T 15-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 PIRSF PIRSF006288 28 892 0.0 T 15-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 Gene3D G3DSA:3.30.70.260 814 887 6.0E-5 T 15-10-2018 NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 Pfam PF01842 ACT domain 818 871 1.2E-8 T 15-10-2018 IPR002912 ACT domain NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 Pfam PF08335 GlnD PII-uridylyltransferase 195 333 1.5E-37 T 15-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 SMART SM00471 466 613 1.5E-11 T 15-10-2018 IPR003607 HD/PDEase domain NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 SUPERFAMILY SSF81301 49 191 1.6E-21 T 15-10-2018 NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 SUPERFAMILY SSF55021 707 775 2.82E-9 T 15-10-2018 NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 892 346.299 T 15-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 SUPERFAMILY SSF55021 814 879 9.16E-10 T 15-10-2018 NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 SUPERFAMILY SSF109604 459 561 1.76E-12 T 15-10-2018 NJ56_09675 bd360c3c7189b8263f0d914db2feeff6 892 Pfam PF01909 Nucleotidyltransferase domain 89 145 4.9E-5 T 15-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 NJ56_08700 06827cd84ad540b781573d27dc817889 217 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 13 209 2.8E-82 T 15-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_08700 06827cd84ad540b781573d27dc817889 217 SUPERFAMILY SSF55821 7 211 1.24E-86 T 15-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily NJ56_08700 06827cd84ad540b781573d27dc817889 217 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 11 213 42.656 T 15-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_08700 06827cd84ad540b781573d27dc817889 217 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 17 208 5.1E-84 T 15-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_08700 06827cd84ad540b781573d27dc817889 217 Gene3D G3DSA:3.90.870.10 1 217 9.9E-96 T 15-10-2018 NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 SUPERFAMILY SSF48179 204 384 4.08E-46 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 Gene3D G3DSA:1.10.1040.10 207 382 4.5E-69 T 15-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 PRINTS PR00084 Mannitol dehydrogenase signature 114 127 1.2E-16 T 15-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 PRINTS PR00084 Mannitol dehydrogenase signature 170 185 1.2E-16 T 15-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 1.2E-16 T 15-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 PRINTS PR00084 Mannitol dehydrogenase signature 150 163 1.2E-16 T 15-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 148 371 6.1E-64 T 15-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 SUPERFAMILY SSF51735 1 203 1.65E-45 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 Gene3D G3DSA:3.40.50.720 1 205 1.5E-81 T 15-10-2018 NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 378 40.218 T 15-10-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 123 1.7E-23 T 15-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 NJ56_06520 23407dcf0674d3c46343362f44bd9d3c 387 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 150 162 - T 15-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 NJ56_02410 0c58bf0cbcd8ff7f614cc32f6a6ec887 437 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 24 430 1.7E-138 T 15-10-2018 NJ56_02410 0c58bf0cbcd8ff7f614cc32f6a6ec887 437 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 104 434 1.6E-26 T 15-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 NJ56_02410 0c58bf0cbcd8ff7f614cc32f6a6ec887 437 Pfam PF01938 TRAM domain 12 66 6.3E-9 T 15-10-2018 IPR002792 TRAM domain NJ56_02410 0c58bf0cbcd8ff7f614cc32f6a6ec887 437 Gene3D G3DSA:2.40.50.140 1 87 9.7E-31 T 15-10-2018 NJ56_02410 0c58bf0cbcd8ff7f614cc32f6a6ec887 437 Gene3D G3DSA:3.40.50.150 88 432 2.0E-119 T 15-10-2018 NJ56_02410 0c58bf0cbcd8ff7f614cc32f6a6ec887 437 SUPERFAMILY SSF50249 2 67 7.42E-14 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_02410 0c58bf0cbcd8ff7f614cc32f6a6ec887 437 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 369 399 - T 15-10-2018 IPR030390 RNA methyltransferase TrmA, active site NJ56_02410 0c58bf0cbcd8ff7f614cc32f6a6ec887 437 SUPERFAMILY SSF53335 75 437 2.95E-82 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_02410 0c58bf0cbcd8ff7f614cc32f6a6ec887 437 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 18 437 62.274 T 15-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 NJ56_02410 0c58bf0cbcd8ff7f614cc32f6a6ec887 437 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 420 430 - T 15-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site NJ56_02410 0c58bf0cbcd8ff7f614cc32f6a6ec887 437 Gene3D G3DSA:3.40.1350.30 134 270 2.0E-119 T 15-10-2018 NJ56_09670 30f7e21c73772d480ae87f70fd20474f 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 0.0019 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_09670 30f7e21c73772d480ae87f70fd20474f 274 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3 273 2.1E-158 T 15-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 NJ56_09670 30f7e21c73772d480ae87f70fd20474f 274 Gene3D G3DSA:2.160.10.10 87 257 1.7E-57 T 15-10-2018 NJ56_09670 30f7e21c73772d480ae87f70fd20474f 274 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 7.4E-12 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_09670 30f7e21c73772d480ae87f70fd20474f 274 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 4.2E-25 T 15-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 NJ56_09670 30f7e21c73772d480ae87f70fd20474f 274 SUPERFAMILY SSF51161 1 256 3.19E-79 T 15-10-2018 IPR011004 Trimeric LpxA-like superfamily NJ56_09670 30f7e21c73772d480ae87f70fd20474f 274 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 58.018 T 15-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 NJ56_09670 30f7e21c73772d480ae87f70fd20474f 274 Gene3D G3DSA:1.10.166.10 1 70 1.6E-33 T 15-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 NJ56_09670 30f7e21c73772d480ae87f70fd20474f 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 15-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 Gene3D G3DSA:1.20.120.160 1 145 1.5E-43 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 Gene3D G3DSA:2.30.30.40 518 646 1.1E-38 T 15-10-2018 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 478 496 5.5E-12 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 502 515 5.5E-12 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 472 5.5E-12 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 437 5.5E-12 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 SMART SM01231 270 333 2.9E-20 T 15-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 381 517 1.7E-16 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 Gene3D G3DSA:2.40.50.180 541 605 1.1E-38 T 15-10-2018 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 SMART SM00073 5 102 2.1E-29 T 15-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 SUPERFAMILY SSF47384 271 334 2.51E-15 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 Pfam PF01627 Hpt domain 9 104 4.7E-17 T 15-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 SUPERFAMILY SSF55874 336 516 1.18E-32 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 Pfam PF09078 CheY binding 158 220 8.5E-24 T 15-10-2018 IPR015162 CheY binding NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 SUPERFAMILY SSF47226 7 126 1.65E-29 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 Pfam PF01584 CheW-like domain 523 649 1.6E-25 T 15-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 SUPERFAMILY SSF55052 157 220 7.85E-20 T 15-10-2018 IPR035891 CheY-binding domain of CheA NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 SUPERFAMILY SSF50341 517 649 4.05E-31 T 15-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 SMART SM00260 510 650 2.2E-42 T 15-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 Gene3D G3DSA:3.30.565.10 334 517 4.0E-52 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 SMART SM00387 378 518 2.3E-25 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 Gene3D G3DSA:3.30.70.400 153 223 3.4E-26 T 15-10-2018 IPR035891 CheY-binding domain of CheA NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 271 333 4.8E-17 T 15-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NJ56_12795 dea0b13f6d18f0f520891745fb013e33 665 Gene3D G3DSA:1.10.287.560 270 333 1.9E-16 T 15-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 Gene3D G3DSA:2.60.34.10 389 518 3.0E-50 T 15-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 Gene3D G3DSA:3.30.420.40 194 361 7.2E-111 T 15-10-2018 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 SUPERFAMILY SSF100920 384 533 4.32E-51 T 15-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 616 45.649 T 15-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 SUPERFAMILY SSF100934 504 615 1.16E-35 T 15-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 15-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 SUPERFAMILY SSF53067 20 196 1.38E-50 T 15-10-2018 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 615 2.9E-269 T 15-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 Gene3D G3DSA:3.90.640.10 238 311 7.2E-111 T 15-10-2018 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 SUPERFAMILY SSF53067 200 377 1.51E-50 T 15-10-2018 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 15-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 Gene3D G3DSA:3.30.420.40 23 374 7.2E-111 T 15-10-2018 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 Gene3D G3DSA:1.20.1270.10 520 615 4.5E-27 T 15-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 15-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 PRINTS PR00301 70kDa heat shock protein signature 329 345 6.7E-56 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 PRINTS PR00301 70kDa heat shock protein signature 360 380 6.7E-56 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 PRINTS PR00301 70kDa heat shock protein signature 20 33 6.7E-56 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 PRINTS PR00301 70kDa heat shock protein signature 466 482 6.7E-56 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 PRINTS PR00301 70kDa heat shock protein signature 48 60 6.7E-56 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 PRINTS PR00301 70kDa heat shock protein signature 152 172 6.7E-56 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 PRINTS PR00301 70kDa heat shock protein signature 211 221 6.7E-56 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 PRINTS PR00301 70kDa heat shock protein signature 70 78 6.7E-56 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 PRINTS PR00301 70kDa heat shock protein signature 385 404 6.7E-56 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_10555 eb518c0fe901dc57a5d4935adb9df3f2 616 Pfam PF00012 Hsp70 protein 22 600 1.9E-192 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_16405 8c1b185ffbbbb36003e701fb0b1e6f30 373 SUPERFAMILY SSF51197 6 290 1.65E-72 T 15-10-2018 NJ56_16405 8c1b185ffbbbb36003e701fb0b1e6f30 373 Gene3D G3DSA:2.60.120.650 2 204 1.5E-85 T 15-10-2018 NJ56_16405 8c1b185ffbbbb36003e701fb0b1e6f30 373 Pfam PF08007 Cupin superfamily protein 9 310 2.2E-101 T 15-10-2018 IPR003347 JmjC domain NJ56_16405 8c1b185ffbbbb36003e701fb0b1e6f30 373 Gene3D G3DSA:1.10.10.2510 205 372 4.5E-60 T 15-10-2018 NJ56_16405 8c1b185ffbbbb36003e701fb0b1e6f30 373 SMART SM00558 85 215 1.9E-7 T 15-10-2018 IPR003347 JmjC domain NJ56_02900 29516e0d6d6b2e472d0f94a7e612b008 125 Hamap MF_00791 Protein ApaG [apaG]. 1 125 31.747 T 15-10-2018 IPR023065 Uncharacterised protein family ApaG NJ56_02900 29516e0d6d6b2e472d0f94a7e612b008 125 SUPERFAMILY SSF110069 5 125 1.7E-47 T 15-10-2018 IPR036767 ApaG domain superfamily NJ56_02900 29516e0d6d6b2e472d0f94a7e612b008 125 Pfam PF04379 ApaG domain 18 102 1.3E-33 T 15-10-2018 IPR007474 ApaG domain NJ56_02900 29516e0d6d6b2e472d0f94a7e612b008 125 Gene3D G3DSA:2.60.40.1470 1 125 5.5E-46 T 15-10-2018 IPR036767 ApaG domain superfamily NJ56_17745 8281ba0072fff64453be458acf677beb 217 Pfam PF05309 TraE protein 27 145 1.1E-15 T 15-10-2018 IPR007973 Pilus assembly TraE GO:0000746 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 PIRSF PIRSF000854 6 793 0.0 T 15-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 Gene3D G3DSA:3.20.20.60 481 792 1.2E-100 T 15-10-2018 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 697 715 - T 15-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 SUPERFAMILY SSF51621 467 789 1.23E-96 T 15-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 348 3.0E-118 T 15-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 484 784 9.0E-60 T 15-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 Gene3D G3DSA:3.30.1490.20 7 198 7.6E-71 T 15-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 Gene3D G3DSA:3.30.470.20 199 359 2.8E-59 T 15-10-2018 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 SUPERFAMILY SSF56059 9 388 4.94E-107 T 15-10-2018 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 Pfam PF00391 PEP-utilising enzyme, mobile domain 387 458 7.5E-27 T 15-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 Gene3D G3DSA:3.50.30.10 360 467 1.3E-40 T 15-10-2018 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 11 789 0.0 T 15-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 SUPERFAMILY SSF52009 351 469 4.71E-36 T 15-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 NJ56_14420 2e894397c949887b24f64d09d4da8a6d 794 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 417 428 - T 15-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 NJ56_08640 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 2.8E-17 T 15-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_08640 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 2.8E-17 T 15-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_08640 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 2.8E-17 T 15-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_08640 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 2.8E-17 T 15-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_08640 e0f63aa874b218a4c9d359851efe3e90 71 Pfam PF01165 Ribosomal protein S21 4 56 6.3E-22 T 15-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_08640 e0f63aa874b218a4c9d359851efe3e90 71 Gene3D G3DSA:1.20.5.1150 16 54 2.1E-21 T 15-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_08640 e0f63aa874b218a4c9d359851efe3e90 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 56 1.0E-15 T 15-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_08640 e0f63aa874b218a4c9d359851efe3e90 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.1E-24 T 15-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_08640 e0f63aa874b218a4c9d359851efe3e90 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 15-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_08640 e0f63aa874b218a4c9d359851efe3e90 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.283 T 15-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 Gene3D G3DSA:3.40.1140.10 1 227 2.5E-101 T 15-10-2018 NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 Gene3D G3DSA:1.20.58.850 581 852 9.5E-139 T 15-10-2018 NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 1 1471 11.057 T 15-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 Gene3D G3DSA:1.20.58.850 620 830 9.5E-139 T 15-10-2018 NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 PIRSF PIRSF005246 1 1479 0.0 T 15-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 SUPERFAMILY SSF52540 22 224 1.28E-24 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 Gene3D G3DSA:3.40.1140.10 1383 1468 2.8E-38 T 15-10-2018 NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 Pfam PF16330 MukB hinge domain 645 810 7.1E-73 T 15-10-2018 IPR032520 MukB, hinge domain NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 Pfam PF04310 MukB N-terminal 2 227 3.6E-124 T 15-10-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 SUPERFAMILY SSF52540 21 1433 7.41E-7 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 Gene3D G3DSA:1.20.1060.30 667 778 9.5E-139 T 15-10-2018 NJ56_16845 cba9ced4ce96fa90e161339f77947eac 1482 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1336 1424 8.0E-15 T 15-10-2018 NJ56_16365 4515d50279686dc140c3c78096199bfd 208 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 66 80 - T 15-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 NJ56_16365 4515d50279686dc140c3c78096199bfd 208 Gene3D G3DSA:3.30.70.1560 95 195 1.6E-41 T 15-10-2018 NJ56_16365 4515d50279686dc140c3c78096199bfd 208 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 35 206 7.8E-57 T 15-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 NJ56_16365 4515d50279686dc140c3c78096199bfd 208 Pfam PF00849 RNA pseudouridylate synthase 60 176 1.0E-12 T 15-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_16365 4515d50279686dc140c3c78096199bfd 208 SUPERFAMILY SSF55120 29 206 7.04E-42 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_16365 4515d50279686dc140c3c78096199bfd 208 Gene3D G3DSA:3.30.70.580 19 94 2.7E-26 T 15-10-2018 NJ56_02290 8ba78a0b55334c665107929e98c464fc 325 SUPERFAMILY SSF51261 76 322 2.56E-50 T 15-10-2018 IPR011055 Duplicated hybrid motif NJ56_02290 8ba78a0b55334c665107929e98c464fc 325 SMART SM00257 76 120 2.7E-10 T 15-10-2018 IPR018392 LysM domain NJ56_02290 8ba78a0b55334c665107929e98c464fc 325 Pfam PF01476 LysM domain 77 118 1.7E-9 T 15-10-2018 IPR018392 LysM domain NJ56_02290 8ba78a0b55334c665107929e98c464fc 325 Pfam PF01551 Peptidase family M23 225 318 1.1E-31 T 15-10-2018 IPR016047 Peptidase M23 NJ56_02290 8ba78a0b55334c665107929e98c464fc 325 Gene3D G3DSA:3.10.350.10 69 128 1.3E-10 T 15-10-2018 IPR036779 LysM domain superfamily NJ56_02290 8ba78a0b55334c665107929e98c464fc 325 Gene3D G3DSA:2.70.70.10 179 325 2.9E-38 T 15-10-2018 IPR011055 Duplicated hybrid motif NJ56_01080 243ec613c2cc9efff90913a941e6c094 563 Pfam PF00999 Sodium/hydrogen exchanger family 13 384 1.4E-78 T 15-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 NJ56_01080 243ec613c2cc9efff90913a941e6c094 563 Pfam PF02254 TrkA-N domain 421 534 9.1E-23 T 15-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 NJ56_01080 243ec613c2cc9efff90913a941e6c094 563 Gene3D G3DSA:1.20.1530.20 6 396 4.3E-79 T 15-10-2018 IPR038770 Sodium/solute symporter superfamily NJ56_01080 243ec613c2cc9efff90913a941e6c094 563 SUPERFAMILY SSF51735 418 547 3.24E-27 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_01080 243ec613c2cc9efff90913a941e6c094 563 Gene3D G3DSA:3.40.50.720 412 550 1.1E-28 T 15-10-2018 NJ56_01080 243ec613c2cc9efff90913a941e6c094 563 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 294 1.3E-80 T 15-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 Pfam PF17154 Gammaproteobacterial periplasmic sensor domain 36 156 9.6E-56 T 15-10-2018 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 SMART SM00052 413 658 3.8E-98 T 15-10-2018 IPR001633 EAL domain NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 Pfam PF00672 HAMP domain 181 232 1.4E-6 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 Gene3D G3DSA:3.20.20.450 417 666 1.7E-84 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 SUPERFAMILY SSF55073 249 405 5.26E-22 T 15-10-2018 IPR029787 Nucleotide cyclase NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 SMART SM00267 232 403 6.6E-19 T 15-10-2018 IPR000160 GGDEF domain NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 Pfam PF00563 EAL domain 419 653 5.4E-63 T 15-10-2018 IPR001633 EAL domain NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 241 402 3.2E-11 T 15-10-2018 IPR000160 GGDEF domain NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 Gene3D G3DSA:3.30.70.270 240 416 1.5E-27 T 15-10-2018 NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 SUPERFAMILY SSF141868 418 664 7.32E-76 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 Pfam PF00990 Diguanylate cyclase, GGDEF domain 244 398 2.6E-21 T 15-10-2018 IPR000160 GGDEF domain NJ56_06745 04a2b79ca75890061d8b8d063478ee7a 666 Gene3D G3DSA:1.20.1480.50 144 239 2.6E-6 T 15-10-2018 NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 Gene3D G3DSA:3.40.50.11610 723 929 8.6E-174 T 15-10-2018 NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 SMART SM00861 593 786 9.6E-63 T 15-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 Pfam PF00676 Dehydrogenase E1 component 221 514 4.1E-51 T 15-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 932 0.0 T 15-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 Gene3D G3DSA:3.40.50.970 167 533 8.5E-150 T 15-10-2018 NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 PIRSF PIRSF000157 1 934 0.0 T 15-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 Pfam PF02779 Transketolase, pyrimidine binding domain 592 787 2.6E-66 T 15-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 Gene3D G3DSA:1.10.287.1150 84 166 6.0E-30 T 15-10-2018 NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 790 932 8.2E-54 T 15-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 49 1.8E-16 T 15-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 SUPERFAMILY SSF52518 121 543 4.12E-89 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 Gene3D G3DSA:3.40.50.12470 556 802 8.6E-174 T 15-10-2018 NJ56_00345 e70a3e71d123ebbb5a8a1dbdfdd7cfae 935 SUPERFAMILY SSF52518 577 793 1.57E-51 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 292 4.9E-52 T 15-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 SUPERFAMILY SSF56014 632 808 7.07E-46 T 15-10-2018 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 SUPERFAMILY SSF51905 2 189 1.62E-38 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 Gene3D G3DSA:3.30.413.10 631 782 1.2E-29 T 15-10-2018 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 PIRSF PIRSF037149 1 834 0.0 T 15-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 559 621 1.8E-9 T 15-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 SUPERFAMILY SSF51905 144 310 4.64E-29 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 6.7E-14 T 15-10-2018 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 6.7E-14 T 15-10-2018 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 6.7E-14 T 15-10-2018 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 6.7E-14 T 15-10-2018 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 5.0E-11 T 15-10-2018 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 5.0E-11 T 15-10-2018 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 5.0E-11 T 15-10-2018 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 5.0E-11 T 15-10-2018 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 Gene3D G3DSA:3.50.50.60 110 246 2.1E-82 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 SUPERFAMILY SSF55124 501 626 4.51E-29 T 15-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 678 694 - T 15-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 Gene3D G3DSA:1.10.10.1100 422 476 1.2E-12 T 15-10-2018 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 632 756 5.5E-14 T 15-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 PRINTS PR00397 Sirohaem Fe-binding site signature 635 653 6.6E-6 T 15-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 PRINTS PR00397 Sirohaem Fe-binding site signature 678 696 6.6E-6 T 15-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 Gene3D G3DSA:3.50.50.60 8 283 2.1E-82 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 800 0.0 T 15-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 NJ56_07150 7ebc5749d862dd5bb8b7cbd1c2335364 847 Pfam PF04324 BFD-like [2Fe-2S] binding domain 423 470 2.6E-15 T 15-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain NJ56_15555 92a0b8c1df35455a9690743e20b782fc 268 SUPERFAMILY SSF56219 1 268 3.93E-88 T 15-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily NJ56_15555 92a0b8c1df35455a9690743e20b782fc 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 266 1.3E-89 T 15-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 NJ56_15555 92a0b8c1df35455a9690743e20b782fc 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 259 4.2E-22 T 15-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase NJ56_15555 92a0b8c1df35455a9690743e20b782fc 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 15-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 NJ56_15555 92a0b8c1df35455a9690743e20b782fc 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 266 3.2E-106 T 15-10-2018 NJ56_15555 92a0b8c1df35455a9690743e20b782fc 268 Gene3D G3DSA:3.60.10.10 1 267 1.0E-83 T 15-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily NJ56_06370 d44ee3d809f568ada5ee57a88d2583ff 85 Pfam PF01809 Haemolytic domain 10 75 1.3E-29 T 15-10-2018 IPR002696 Putative membrane protein insertion efficiency factor NJ56_06370 d44ee3d809f568ada5ee57a88d2583ff 85 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 8 76 24.6 T 15-10-2018 IPR002696 Putative membrane protein insertion efficiency factor NJ56_06370 d44ee3d809f568ada5ee57a88d2583ff 85 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 12 82 4.6E-32 T 15-10-2018 IPR002696 Putative membrane protein insertion efficiency factor NJ56_06370 d44ee3d809f568ada5ee57a88d2583ff 85 SMART SM01234 8 75 3.7E-44 T 15-10-2018 IPR002696 Putative membrane protein insertion efficiency factor NJ56_06370 d44ee3d809f568ada5ee57a88d2583ff 85 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 22 68 4.0E-21 T 15-10-2018 IPR002696 Putative membrane protein insertion efficiency factor NJ56_02395 42b40b2490eaec732afdf53a47740f8f 545 Gene3D G3DSA:3.40.50.880 287 545 4.7E-106 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_02395 42b40b2490eaec732afdf53a47740f8f 545 Pfam PF06418 CTP synthase N-terminus 5 266 4.5E-126 T 15-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 NJ56_02395 42b40b2490eaec732afdf53a47740f8f 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 2.1E-63 T 15-10-2018 IPR017926 Glutamine amidotransferase NJ56_02395 42b40b2490eaec732afdf53a47740f8f 545 Gene3D G3DSA:3.40.50.300 1 285 6.3E-136 T 15-10-2018 NJ56_02395 42b40b2490eaec732afdf53a47740f8f 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.173 T 15-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 NJ56_02395 42b40b2490eaec732afdf53a47740f8f 545 SUPERFAMILY SSF52540 3 269 3.61E-122 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02395 42b40b2490eaec732afdf53a47740f8f 545 SUPERFAMILY SSF52317 289 541 7.34E-88 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_02395 42b40b2490eaec732afdf53a47740f8f 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 6.4E-263 T 15-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 NJ56_17225 130610b1e048e475cf7f32449d033b9f 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 119 195 5.4E-7 T 15-10-2018 IPR004046 Glutathione S-transferase, C-terminal NJ56_17225 130610b1e048e475cf7f32449d033b9f 206 Gene3D G3DSA:3.40.30.10 1 83 1.3E-32 T 15-10-2018 NJ56_17225 130610b1e048e475cf7f32449d033b9f 206 Gene3D G3DSA:1.20.1050.10 86 201 4.4E-40 T 15-10-2018 NJ56_17225 130610b1e048e475cf7f32449d033b9f 206 SUPERFAMILY SSF47616 72 202 4.04E-26 T 15-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NJ56_17225 130610b1e048e475cf7f32449d033b9f 206 SUPERFAMILY SSF52833 1 81 1.44E-21 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_17225 130610b1e048e475cf7f32449d033b9f 206 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 8.6E-14 T 15-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 NJ56_04890 ddaf3956ffae77dce936a2eccbae1470 498 Gene3D G3DSA:1.20.5.570 458 497 9.5E-19 T 15-10-2018 NJ56_04890 ddaf3956ffae77dce936a2eccbae1470 498 Gene3D G3DSA:3.40.1670.10 340 457 2.9E-52 T 15-10-2018 NJ56_04890 ddaf3956ffae77dce936a2eccbae1470 498 SUPERFAMILY SSF143968 326 489 6.93E-68 T 15-10-2018 NJ56_04890 ddaf3956ffae77dce936a2eccbae1470 498 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 9 458 6.5E-188 T 15-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 NJ56_04890 ddaf3956ffae77dce936a2eccbae1470 498 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 4 490 73.723 T 15-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 NJ56_04890 ddaf3956ffae77dce936a2eccbae1470 498 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 14 434 2.3E-173 T 15-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 NJ56_04890 ddaf3956ffae77dce936a2eccbae1470 498 SUPERFAMILY SSF50475 6 325 9.81E-128 T 15-10-2018 NJ56_05630 b8a6867ab6b34676a03078fcbc1ac86c 334 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 15-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 NJ56_05630 b8a6867ab6b34676a03078fcbc1ac86c 334 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 333 1.8E-125 T 15-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 NJ56_05630 b8a6867ab6b34676a03078fcbc1ac86c 334 Gene3D G3DSA:3.40.50.720 6 330 1.4E-126 T 15-10-2018 NJ56_05630 b8a6867ab6b34676a03078fcbc1ac86c 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 146 1.0E-33 T 15-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NJ56_05630 b8a6867ab6b34676a03078fcbc1ac86c 334 SUPERFAMILY SSF51735 2 183 1.3E-45 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_05630 b8a6867ab6b34676a03078fcbc1ac86c 334 Gene3D G3DSA:3.30.360.10 153 312 1.4E-126 T 15-10-2018 NJ56_05630 b8a6867ab6b34676a03078fcbc1ac86c 334 SMART SM00859 3 146 2.5E-50 T 15-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NJ56_05630 b8a6867ab6b34676a03078fcbc1ac86c 334 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 334 39.483 T 15-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 NJ56_05630 b8a6867ab6b34676a03078fcbc1ac86c 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 163 311 9.0E-15 T 15-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 NJ56_05630 b8a6867ab6b34676a03078fcbc1ac86c 334 SUPERFAMILY SSF55347 154 308 2.83E-49 T 15-10-2018 NJ56_12680 6f3432c6d556ec13a121b395ae363d09 244 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 129 216 2.9E-12 T 15-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 NJ56_12680 6f3432c6d556ec13a121b395ae363d09 244 PRINTS PR01399 Enterobactin synthetase component D signature 172 188 5.0E-16 T 15-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 NJ56_12680 6f3432c6d556ec13a121b395ae363d09 244 PRINTS PR01399 Enterobactin synthetase component D signature 60 80 5.0E-16 T 15-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 NJ56_12680 6f3432c6d556ec13a121b395ae363d09 244 PRINTS PR01399 Enterobactin synthetase component D signature 90 108 5.0E-16 T 15-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 NJ56_12680 6f3432c6d556ec13a121b395ae363d09 244 SUPERFAMILY SSF56214 129 222 2.35E-15 T 15-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 NJ56_12680 6f3432c6d556ec13a121b395ae363d09 244 Gene3D G3DSA:3.90.470.20 56 147 1.6E-6 T 15-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 NJ56_14980 81608c5b9b7df69d26fb79113b7ef13e 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 97 189 2.5E-13 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_14980 81608c5b9b7df69d26fb79113b7ef13e 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 64 194 1.1E-17 T 15-10-2018 NJ56_14980 81608c5b9b7df69d26fb79113b7ef13e 224 Gene3D G3DSA:1.10.150.240 16 95 1.0E-59 T 15-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 NJ56_14980 81608c5b9b7df69d26fb79113b7ef13e 224 SUPERFAMILY SSF56784 2 222 4.28E-45 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_14980 81608c5b9b7df69d26fb79113b7ef13e 224 Gene3D G3DSA:3.40.50.1000 5 218 1.0E-59 T 15-10-2018 IPR023214 HAD superfamily NJ56_14980 81608c5b9b7df69d26fb79113b7ef13e 224 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 3 222 3.3E-74 T 15-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 NJ56_13565 2f2bb8f389f18c361223180403ecfdcb 338 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 126 143 - T 15-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 NJ56_13565 2f2bb8f389f18c361223180403ecfdcb 338 Gene3D G3DSA:3.40.190.10 128 313 7.2E-110 T 15-10-2018 NJ56_13565 2f2bb8f389f18c361223180403ecfdcb 338 SUPERFAMILY SSF53850 33 327 1.05E-73 T 15-10-2018 NJ56_13565 2f2bb8f389f18c361223180403ecfdcb 338 PIRSF PIRSF002825 4 338 9.8E-83 T 15-10-2018 IPR026045 Ferric binding protein NJ56_13565 2f2bb8f389f18c361223180403ecfdcb 338 Pfam PF13343 Bacterial extracellular solute-binding protein 81 309 2.3E-24 T 15-10-2018 NJ56_13565 2f2bb8f389f18c361223180403ecfdcb 338 Gene3D G3DSA:3.40.190.10 34 308 7.2E-110 T 15-10-2018 NJ56_00685 a26441cff07d997b4ea463f7d32131c6 358 SUPERFAMILY SSF50685 74 164 8.72E-9 T 15-10-2018 IPR036908 RlpA-like domain superfamily NJ56_00685 a26441cff07d997b4ea463f7d32131c6 358 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 16 166 22.722 T 15-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 NJ56_00685 a26441cff07d997b4ea463f7d32131c6 358 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 78 177 1.8E-35 T 15-10-2018 IPR012997 Rare lipoprotein A NJ56_00685 a26441cff07d997b4ea463f7d32131c6 358 Pfam PF03330 Lytic transglycolase 78 164 7.0E-24 T 15-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain NJ56_00685 a26441cff07d997b4ea463f7d32131c6 358 SUPERFAMILY SSF110997 284 354 1.31E-13 T 15-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 NJ56_00685 a26441cff07d997b4ea463f7d32131c6 358 Pfam PF05036 Sporulation related domain 283 355 3.1E-14 T 15-10-2018 IPR007730 Sporulation-like domain GO:0042834 NJ56_00685 a26441cff07d997b4ea463f7d32131c6 358 Gene3D G3DSA:2.40.40.10 76 167 1.5E-32 T 15-10-2018 IPR036908 RlpA-like domain superfamily NJ56_00685 a26441cff07d997b4ea463f7d32131c6 358 Gene3D G3DSA:3.30.70.1070 285 357 1.4E-10 T 15-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 NJ56_06925 cff821bb9fc777b6e4e3b877ab3b8c22 815 Pfam PF00343 Carbohydrate phosphorylase 102 810 0.0 T 15-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_06925 cff821bb9fc777b6e4e3b877ab3b8c22 815 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 810 0.0 T 15-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_06925 cff821bb9fc777b6e4e3b877ab3b8c22 815 Gene3D G3DSA:3.40.50.2000 28 812 0.0 T 15-10-2018 NJ56_06925 cff821bb9fc777b6e4e3b877ab3b8c22 815 PIRSF PIRSF000460 2 815 1.9E-227 T 15-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_06925 cff821bb9fc777b6e4e3b877ab3b8c22 815 SUPERFAMILY SSF53756 13 814 0.0 T 15-10-2018 NJ56_06925 cff821bb9fc777b6e4e3b877ab3b8c22 815 Gene3D G3DSA:3.40.50.2000 468 795 0.0 T 15-10-2018 NJ56_06925 cff821bb9fc777b6e4e3b877ab3b8c22 815 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 654 666 - T 15-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_08185 07850160efc4ce5bad9cbbcc71b54fe2 328 Gene3D G3DSA:3.40.50.10490 10 200 6.6E-65 T 15-10-2018 NJ56_08185 07850160efc4ce5bad9cbbcc71b54fe2 328 SUPERFAMILY SSF53697 14 325 7.12E-67 T 15-10-2018 NJ56_08185 07850160efc4ce5bad9cbbcc71b54fe2 328 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 50 318 6.8E-126 T 15-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 NJ56_08185 07850160efc4ce5bad9cbbcc71b54fe2 328 Pfam PF00571 CBS domain 206 261 5.6E-6 T 15-10-2018 IPR000644 CBS domain NJ56_08185 07850160efc4ce5bad9cbbcc71b54fe2 328 Pfam PF00571 CBS domain 274 325 2.5E-6 T 15-10-2018 IPR000644 CBS domain NJ56_08185 07850160efc4ce5bad9cbbcc71b54fe2 328 Gene3D G3DSA:3.10.580.10 201 325 2.9E-47 T 15-10-2018 NJ56_08185 07850160efc4ce5bad9cbbcc71b54fe2 328 PIRSF PIRSF004692 2 328 1.9E-135 T 15-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 NJ56_08185 07850160efc4ce5bad9cbbcc71b54fe2 328 Pfam PF01380 SIS domain 46 177 1.0E-32 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_17365 c675713b937cc2b8926ca2ad4cd8ba90 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 325 2.2E-48 T 15-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 SUPERFAMILY SSF81767 227 368 3.53E-45 T 15-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 SUPERFAMILY SSF52540 416 618 3.55E-57 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 SUPERFAMILY SSF52540 5 415 9.93E-83 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 SUPERFAMILY SSF81886 620 892 7.98E-83 T 15-10-2018 IPR036266 SecA, Wing/Scaffold superfamily NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 15-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 ProSitePatterns PS01312 SecA family signature. 500 515 - T 15-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 19.937 T 15-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 Pfam PF01043 SecA preprotein cross-linking domain 232 358 7.5E-40 T 15-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 Gene3D G3DSA:1.10.3060.10 621 833 9.8E-82 T 15-10-2018 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 PRINTS PR00906 SecA protein signature 101 115 2.1E-73 T 15-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 PRINTS PR00906 SecA protein signature 63 87 2.1E-73 T 15-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 PRINTS PR00906 SecA protein signature 376 393 2.1E-73 T 15-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 PRINTS PR00906 SecA protein signature 170 190 2.1E-73 T 15-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 PRINTS PR00906 SecA protein signature 339 361 2.1E-73 T 15-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 PRINTS PR00906 SecA protein signature 117 127 2.1E-73 T 15-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 PRINTS PR00906 SecA protein signature 413 426 2.1E-73 T 15-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 Pfam PF02810 SEC-C motif 884 902 1.8E-9 T 15-10-2018 IPR004027 SEC-C motif NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 Gene3D G3DSA:3.40.50.300 417 620 1.6E-87 T 15-10-2018 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 SMART SM00957 6 402 0.0 T 15-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 SMART SM00958 228 358 2.0E-85 T 15-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 Gene3D G3DSA:3.90.1440.10 229 368 1.8E-176 T 15-10-2018 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 Pfam PF07517 SecA DEAD-like domain 7 402 1.1E-130 T 15-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 Gene3D G3DSA:3.40.50.300 22 415 1.8E-176 T 15-10-2018 NJ56_02670 9123bace8b6791fb52cb96dd72c84e38 905 Pfam PF07516 SecA Wing and Scaffold domain 617 830 3.2E-68 T 15-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 NJ56_10540 bc975d8d6830e308a281340d3b95d741 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 4.2E-69 T 15-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 NJ56_10540 bc975d8d6830e308a281340d3b95d741 128 Gene3D G3DSA:3.90.1010.10 1 128 5.4E-58 T 15-10-2018 NJ56_10540 bc975d8d6830e308a281340d3b95d741 128 SUPERFAMILY SSF82649 1 125 3.14E-47 T 15-10-2018 NJ56_10540 bc975d8d6830e308a281340d3b95d741 128 Pfam PF01592 NifU-like N terminal domain 2 126 1.5E-56 T 15-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 NJ56_00730 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 Gene3D G3DSA:2.40.50.140 1 67 8.1E-32 T 15-10-2018 NJ56_00730 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 SUPERFAMILY SSF50249 3 68 9.14E-26 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_00730 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 PRINTS PR00050 Cold shock protein signature 27 36 1.4E-18 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_00730 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 PRINTS PR00050 Cold shock protein signature 6 21 1.4E-18 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_00730 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 PRINTS PR00050 Cold shock protein signature 42 60 1.4E-18 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_00730 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 2.6E-33 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_00730 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 SMART SM00357 5 69 6.9E-33 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_00730 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 15-10-2018 IPR019844 Cold-shock conserved site NJ56_00730 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 PIRSF PIRSF002599 1 69 6.1E-26 T 15-10-2018 IPR012156 Cold shock, CspA GO:0003676 NJ56_18130 37d919fb2e8583faa2b0abbcbecd582c 128 ProDom PD008204 TRAM PLASMID CONJUGATION DNA-BINDING 3D-STRUCTURE TRANSFER: SEQUENCING DIRECT CONJUGATIVE MATING 1 126 2.0E-24 T 15-10-2018 IPR007925 Relaxosome protein TraM GO:0000746|GO:0003677 NJ56_18130 37d919fb2e8583faa2b0abbcbecd582c 128 SUPERFAMILY SSF140581 60 126 4.58E-19 T 15-10-2018 NJ56_18130 37d919fb2e8583faa2b0abbcbecd582c 128 SUPERFAMILY SSF47729 2 55 7.42E-14 T 15-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 NJ56_18130 37d919fb2e8583faa2b0abbcbecd582c 128 Pfam PF05261 TraM protein, DNA-binding 1 126 4.5E-47 T 15-10-2018 IPR007925 Relaxosome protein TraM GO:0000746|GO:0003677 NJ56_18130 37d919fb2e8583faa2b0abbcbecd582c 128 Gene3D G3DSA:1.10.10.450 1 54 1.7E-22 T 15-10-2018 NJ56_03035 0ae312650d5b3526c9e0748a60983181 429 Gene3D G3DSA:3.40.50.1100 103 401 3.1E-140 T 15-10-2018 NJ56_03035 0ae312650d5b3526c9e0748a60983181 429 Gene3D G3DSA:3.90.1380.10 1 81 2.3E-35 T 15-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily NJ56_03035 0ae312650d5b3526c9e0748a60983181 429 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 93 370 7.5E-24 T 15-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme NJ56_03035 0ae312650d5b3526c9e0748a60983181 429 SUPERFAMILY SSF53686 1 426 1.44E-131 T 15-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NJ56_03035 0ae312650d5b3526c9e0748a60983181 429 Gene3D G3DSA:3.40.50.1100 85 394 3.1E-140 T 15-10-2018 NJ56_03035 0ae312650d5b3526c9e0748a60983181 429 Pfam PF14821 Threonine synthase N terminus 8 80 6.2E-11 T 15-10-2018 IPR029144 Threonine synthase, N-terminal NJ56_03035 0ae312650d5b3526c9e0748a60983181 429 TIGRFAM TIGR00260 thrC: threonine synthase 52 395 4.9E-120 T 15-10-2018 IPR004450 Threonine synthase-like NJ56_03035 0ae312650d5b3526c9e0748a60983181 429 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 97 111 - T 15-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 NJ56_01150 56ca4a54ce44974d41b5e95c6fb556da 356 Pfam PF16363 GDP-mannose 4,6 dehydratase 13 327 5.1E-33 T 15-10-2018 IPR016040 NAD(P)-binding domain NJ56_01150 56ca4a54ce44974d41b5e95c6fb556da 356 Gene3D G3DSA:3.40.50.720 1 193 1.0E-49 T 15-10-2018 NJ56_01150 56ca4a54ce44974d41b5e95c6fb556da 356 Gene3D G3DSA:3.90.25.10 194 356 1.8E-70 T 15-10-2018 NJ56_01150 56ca4a54ce44974d41b5e95c6fb556da 356 SUPERFAMILY SSF51735 3 346 3.11E-65 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_01150 56ca4a54ce44974d41b5e95c6fb556da 356 TIGRFAM TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase 6 354 2.8E-160 T 15-10-2018 IPR013445 CDP-glucose 4,6-dehydratase KEGG: 00520+4.2.1.45|MetaCyc: PWY-5833 NJ56_06665 4268e7bae5879b11e36ac0b81a01dab4 445 SUPERFAMILY SSF103473 17 440 1.96E-80 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_06665 4268e7bae5879b11e36ac0b81a01dab4 445 Pfam PF07690 Major Facilitator Superfamily 36 396 5.5E-48 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_06665 4268e7bae5879b11e36ac0b81a01dab4 445 Gene3D G3DSA:1.20.1250.20 19 223 3.5E-50 T 15-10-2018 NJ56_06665 4268e7bae5879b11e36ac0b81a01dab4 445 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 413 1.5E-142 T 15-10-2018 NJ56_06665 4268e7bae5879b11e36ac0b81a01dab4 445 Gene3D G3DSA:1.20.1250.20 237 438 1.8E-46 T 15-10-2018 NJ56_06665 4268e7bae5879b11e36ac0b81a01dab4 445 PIRSF PIRSF002808 6 444 1.3E-142 T 15-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 NJ56_09890 de2f9d865822909812c30d79d620e181 880 Gene3D G3DSA:3.30.1490.20 499 576 1.8E-56 T 15-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 NJ56_09890 de2f9d865822909812c30d79d620e181 880 Gene3D G3DSA:3.40.50.261 285 455 5.8E-44 T 15-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 NJ56_09890 de2f9d865822909812c30d79d620e181 880 Pfam PF13549 ATP-grasp domain 472 694 7.5E-74 T 15-10-2018 NJ56_09890 de2f9d865822909812c30d79d620e181 880 Pfam PF00583 Acetyltransferase (GNAT) family 762 863 1.9E-10 T 15-10-2018 IPR000182 GNAT domain NJ56_09890 de2f9d865822909812c30d79d620e181 880 SUPERFAMILY SSF51735 2 136 1.48E-31 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_09890 de2f9d865822909812c30d79d620e181 880 SMART SM00881 9 104 1.7E-21 T 15-10-2018 IPR003781 CoA-binding GO:0048037 NJ56_09890 de2f9d865822909812c30d79d620e181 880 SUPERFAMILY SSF55729 728 866 9.19E-21 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_09890 de2f9d865822909812c30d79d620e181 880 Gene3D G3DSA:3.40.50.720 2 130 1.8E-29 T 15-10-2018 NJ56_09890 de2f9d865822909812c30d79d620e181 880 Pfam PF13380 CoA binding domain 13 129 3.7E-20 T 15-10-2018 IPR003781 CoA-binding GO:0048037 NJ56_09890 de2f9d865822909812c30d79d620e181 880 Gene3D G3DSA:3.40.630.30 717 880 2.1E-40 T 15-10-2018 NJ56_09890 de2f9d865822909812c30d79d620e181 880 SUPERFAMILY SSF52210 287 447 5.36E-36 T 15-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 NJ56_09890 de2f9d865822909812c30d79d620e181 880 SUPERFAMILY SSF56059 481 687 8.05E-27 T 15-10-2018 NJ56_09890 de2f9d865822909812c30d79d620e181 880 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 147 280 7.3E-45 T 15-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain NJ56_09890 de2f9d865822909812c30d79d620e181 880 Gene3D G3DSA:3.30.470.20 479 690 1.8E-56 T 15-10-2018 NJ56_09890 de2f9d865822909812c30d79d620e181 880 Gene3D G3DSA:3.40.50.261 131 283 1.0E-46 T 15-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 NJ56_09890 de2f9d865822909812c30d79d620e181 880 SUPERFAMILY SSF52210 125 286 7.98E-36 T 15-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 NJ56_14920 113a1c254ca760035914aa045cc78cb7 296 Gene3D G3DSA:3.20.20.150 6 287 1.1E-67 T 15-10-2018 NJ56_14920 113a1c254ca760035914aa045cc78cb7 296 SUPERFAMILY SSF51658 19 285 7.86E-51 T 15-10-2018 IPR036237 Xylose isomerase-like superfamily NJ56_14920 113a1c254ca760035914aa045cc78cb7 296 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 8 284 6.4E-101 T 15-10-2018 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00040+5.1.3.22|KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 NJ56_14920 113a1c254ca760035914aa045cc78cb7 296 Pfam PF01261 Xylose isomerase-like TIM barrel 27 238 2.5E-32 T 15-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain NJ56_00720 4bcf75612efa02e507f0f0b78156f7c4 136 Pfam PF00583 Acetyltransferase (GNAT) family 22 118 4.3E-14 T 15-10-2018 IPR000182 GNAT domain NJ56_00720 4bcf75612efa02e507f0f0b78156f7c4 136 SUPERFAMILY SSF55729 10 125 8.35E-25 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_00720 4bcf75612efa02e507f0f0b78156f7c4 136 Gene3D G3DSA:3.40.630.30 1 129 7.2E-30 T 15-10-2018 NJ56_02310 38769119d43622acf3d4c8728b01659d 160 Gene3D G3DSA:3.30.1330.50 1 160 6.0E-72 T 15-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 NJ56_02310 38769119d43622acf3d4c8728b01659d 160 Pfam PF02542 YgbB family 1 154 1.3E-66 T 15-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 NJ56_02310 38769119d43622acf3d4c8728b01659d 160 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 15-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 NJ56_02310 38769119d43622acf3d4c8728b01659d 160 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 156 2.5E-71 T 15-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 NJ56_02310 38769119d43622acf3d4c8728b01659d 160 SUPERFAMILY SSF69765 1 157 2.62E-66 T 15-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 NJ56_02310 38769119d43622acf3d4c8728b01659d 160 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 36.601 T 15-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 NJ56_16985 842d3cb7c2f86a50c79e9fab68c69c3d 1191 SUPERFAMILY SSF46785 1124 1189 7.62E-22 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_16985 842d3cb7c2f86a50c79e9fab68c69c3d 1191 Gene3D G3DSA:1.10.10.10 1128 1191 7.4E-30 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_16985 842d3cb7c2f86a50c79e9fab68c69c3d 1191 Gene3D G3DSA:3.40.50.300 806 1108 6.2E-124 T 15-10-2018 NJ56_16985 842d3cb7c2f86a50c79e9fab68c69c3d 1191 SMART SM00843 1124 1189 2.3E-41 T 15-10-2018 IPR018541 FtsK gamma domain NJ56_16985 842d3cb7c2f86a50c79e9fab68c69c3d 1191 Pfam PF01580 FtsK/SpoIIIE family 809 1022 8.8E-73 T 15-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 NJ56_16985 842d3cb7c2f86a50c79e9fab68c69c3d 1191 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 20 191 7.5E-45 T 15-10-2018 IPR025199 DNA translocase FtsK, 4TM region NJ56_16985 842d3cb7c2f86a50c79e9fab68c69c3d 1191 Pfam PF09397 Ftsk gamma domain 1126 1186 2.3E-27 T 15-10-2018 IPR018541 FtsK gamma domain NJ56_16985 842d3cb7c2f86a50c79e9fab68c69c3d 1191 Gene3D G3DSA:3.30.980.40 701 805 3.1E-34 T 15-10-2018 NJ56_16985 842d3cb7c2f86a50c79e9fab68c69c3d 1191 SUPERFAMILY SSF52540 783 1095 1.08E-52 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15310 3645fa8b6ffd3afa25bd5b2aeaee5d99 332 Pfam PF00591 Glycosyl transferase family, a/b domain 73 321 2.6E-99 T 15-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_15310 3645fa8b6ffd3afa25bd5b2aeaee5d99 332 Pfam PF02885 Glycosyl transferase family, helical bundle domain 3 62 4.5E-15 T 15-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_15310 3645fa8b6ffd3afa25bd5b2aeaee5d99 332 SUPERFAMILY SSF47648 1 67 7.33E-17 T 15-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_15310 3645fa8b6ffd3afa25bd5b2aeaee5d99 332 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 331 39.216 T 15-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 NJ56_15310 3645fa8b6ffd3afa25bd5b2aeaee5d99 332 Gene3D G3DSA:1.20.970.10 11 183 1.2E-123 T 15-10-2018 NJ56_15310 3645fa8b6ffd3afa25bd5b2aeaee5d99 332 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 5 329 3.1E-127 T 15-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 NJ56_15310 3645fa8b6ffd3afa25bd5b2aeaee5d99 332 SUPERFAMILY SSF52418 70 328 1.44E-92 T 15-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_15310 3645fa8b6ffd3afa25bd5b2aeaee5d99 332 Gene3D G3DSA:3.40.1030.10 67 321 1.2E-123 T 15-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 Gene3D G3DSA:3.40.50.1380 1 200 7.5E-86 T 15-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 Pfam PF02142 MGS-like domain 19 132 2.3E-29 T 15-10-2018 IPR011607 Methylglyoxal synthase-like domain NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 PIRSF PIRSF000414 1 529 3.7E-227 T 15-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 SUPERFAMILY SSF53927 221 529 4.41E-129 T 15-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 529 2.0E-261 T 15-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 Gene3D G3DSA:3.40.140.20 392 529 2.8E-57 T 15-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 529 45.663 T 15-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 460 2.8E-119 T 15-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 SMART SM00798 137 461 8.0E-218 T 15-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 Gene3D G3DSA:3.40.140.20 218 374 7.0E-59 T 15-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 SMART SM00851 19 132 4.0E-61 T 15-10-2018 IPR011607 Methylglyoxal synthase-like domain NJ56_04675 dc64ad354a2248e382f18f7c6a899116 529 SUPERFAMILY SSF52335 7 197 2.75E-71 T 15-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily NJ56_04210 444931451b513cfbd9922a9b4a199162 803 Pfam PF00577 Outer membrane usher protein 181 718 1.1E-164 T 15-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 NJ56_04210 444931451b513cfbd9922a9b4a199162 803 SUPERFAMILY SSF141729 23 137 1.09E-25 T 15-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 NJ56_04210 444931451b513cfbd9922a9b4a199162 803 Gene3D G3DSA:3.10.20.410 22 138 6.0E-24 T 15-10-2018 NJ56_04210 444931451b513cfbd9922a9b4a199162 803 Gene3D G3DSA:2.60.40.3110 250 338 1.3E-31 T 15-10-2018 NJ56_04210 444931451b513cfbd9922a9b4a199162 803 Pfam PF13953 PapC C-terminal domain 728 785 5.8E-15 T 15-10-2018 IPR025949 PapC-like, C-terminal domain NJ56_04210 444931451b513cfbd9922a9b4a199162 803 Gene3D G3DSA:2.60.40.2610 635 723 6.8E-11 T 15-10-2018 NJ56_04210 444931451b513cfbd9922a9b4a199162 803 Pfam PF13954 PapC N-terminal domain 24 161 1.6E-36 T 15-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 NJ56_04210 444931451b513cfbd9922a9b4a199162 803 Gene3D G3DSA:2.60.40.2070 728 802 3.4E-15 T 15-10-2018 NJ56_04210 444931451b513cfbd9922a9b4a199162 803 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 292 302 - T 15-10-2018 IPR018030 Fimbrial membrane usher, conserved site NJ56_15640 6d0f4b71f0495dca78b93e984a887aad 644 Pfam PF08298 PrkA AAA domain 20 380 1.7E-176 T 15-10-2018 IPR013153 PrkA AAA domain NJ56_15640 6d0f4b71f0495dca78b93e984a887aad 644 PIRSF PIRSF000549 1 644 3.0E-286 T 15-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 NJ56_15640 6d0f4b71f0495dca78b93e984a887aad 644 SMART SM00763 19 380 2.7E-215 T 15-10-2018 IPR013153 PrkA AAA domain NJ56_15640 6d0f4b71f0495dca78b93e984a887aad 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 4.8E-73 T 15-10-2018 IPR010650 PrkA C-terminal domain NJ56_15640 6d0f4b71f0495dca78b93e984a887aad 644 SUPERFAMILY SSF52540 75 368 2.34E-16 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15640 6d0f4b71f0495dca78b93e984a887aad 644 Gene3D G3DSA:3.40.50.300 216 355 3.6E-5 T 15-10-2018 NJ56_15640 6d0f4b71f0495dca78b93e984a887aad 644 Gene3D G3DSA:3.40.50.300 75 153 1.6E-5 T 15-10-2018 NJ56_12765 8abbad364abbd9a10d9b7a6c753d6c3d 139 Gene3D G3DSA:3.40.50.620 3 139 2.8E-30 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_12765 8abbad364abbd9a10d9b7a6c753d6c3d 139 SUPERFAMILY SSF52402 3 138 2.09E-23 T 15-10-2018 NJ56_12765 8abbad364abbd9a10d9b7a6c753d6c3d 139 Pfam PF00582 Universal stress protein family 3 138 3.9E-16 T 15-10-2018 IPR006016 UspA NJ56_12765 8abbad364abbd9a10d9b7a6c753d6c3d 139 PIRSF PIRSF006276 1 139 1.2E-40 T 15-10-2018 IPR006015 Universal stress protein A NJ56_11485 a303d7e7ae88b1b6553ef198bc18fbee 491 Gene3D G3DSA:1.10.10.10 1 77 3.4E-24 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_11485 a303d7e7ae88b1b6553ef198bc18fbee 491 Gene3D G3DSA:3.90.1150.10 115 478 1.6E-114 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_11485 a303d7e7ae88b1b6553ef198bc18fbee 491 Pfam PF00155 Aminotransferase class I and II 144 474 8.1E-29 T 15-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NJ56_11485 a303d7e7ae88b1b6553ef198bc18fbee 491 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 1.3E-6 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_11485 a303d7e7ae88b1b6553ef198bc18fbee 491 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 1.3E-6 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_11485 a303d7e7ae88b1b6553ef198bc18fbee 491 Gene3D G3DSA:3.40.640.10 153 371 1.6E-114 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_11485 a303d7e7ae88b1b6553ef198bc18fbee 491 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 76 3.1E-18 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_11485 a303d7e7ae88b1b6553ef198bc18fbee 491 SMART SM00345 17 76 9.0E-19 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_11485 a303d7e7ae88b1b6553ef198bc18fbee 491 SUPERFAMILY SSF53383 96 481 2.91E-96 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_11485 a303d7e7ae88b1b6553ef198bc18fbee 491 SUPERFAMILY SSF46785 6 80 2.15E-22 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_11125 a10d9db85c99e22e81bd128542f32581 291 SUPERFAMILY SSF161098 17 268 3.53E-55 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_11125 a10d9db85c99e22e81bd128542f32581 291 Gene3D G3DSA:1.10.3720.10 21 276 3.5E-61 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_11125 a10d9db85c99e22e81bd128542f32581 291 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 19 276 8.5E-116 T 15-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 NJ56_11125 a10d9db85c99e22e81bd128542f32581 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 267 8.3E-16 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_11125 a10d9db85c99e22e81bd128542f32581 291 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 16 275 4.6E-109 T 15-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 NJ56_04875 6c96d4765012f0c971189c703f337552 729 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 493 517 - T 15-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 NJ56_04875 6c96d4765012f0c971189c703f337552 729 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 15-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 NJ56_04875 6c96d4765012f0c971189c703f337552 729 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 316 494 6.8E-61 T 15-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 NJ56_04875 6c96d4765012f0c971189c703f337552 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 496 592 3.8E-24 T 15-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 NJ56_04875 6c96d4765012f0c971189c703f337552 729 Gene3D G3DSA:1.10.1040.50 497 709 3.2E-72 T 15-10-2018 NJ56_04875 6c96d4765012f0c971189c703f337552 729 SUPERFAMILY SSF52096 2 305 1.85E-66 T 15-10-2018 IPR029045 ClpP/crotonase-like domain superfamily NJ56_04875 6c96d4765012f0c971189c703f337552 729 SUPERFAMILY SSF48179 624 714 3.23E-22 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_04875 6c96d4765012f0c971189c703f337552 729 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 51.781 T 15-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 NJ56_04875 6c96d4765012f0c971189c703f337552 729 SUPERFAMILY SSF48179 495 611 2.89E-28 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_04875 6c96d4765012f0c971189c703f337552 729 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 15-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 NJ56_04875 6c96d4765012f0c971189c703f337552 729 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 205 4.8E-39 T 15-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 NJ56_04875 6c96d4765012f0c971189c703f337552 729 Gene3D G3DSA:3.40.50.720 314 496 3.3E-66 T 15-10-2018 NJ56_04875 6c96d4765012f0c971189c703f337552 729 SUPERFAMILY SSF51735 315 495 4.91E-57 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_04875 6c96d4765012f0c971189c703f337552 729 Gene3D G3DSA:3.90.226.10 1 311 1.2E-90 T 15-10-2018 NJ56_05665 e38bc656c08af977238f7dafda9cfcb5 392 SUPERFAMILY SSF56112 129 251 1.01E-5 T 15-10-2018 IPR011009 Protein kinase-like domain superfamily NJ56_07040 23975970e2aca8389b934af66efe5420 539 SUPERFAMILY SSF53795 228 539 3.66E-128 T 15-10-2018 NJ56_07040 23975970e2aca8389b934af66efe5420 539 Pfam PF01293 Phosphoenolpyruvate carboxykinase 21 489 4.9E-212 T 15-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 NJ56_07040 23975970e2aca8389b934af66efe5420 539 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 15 537 54.967 T 15-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 NJ56_07040 23975970e2aca8389b934af66efe5420 539 SUPERFAMILY SSF68923 8 226 8.72E-92 T 15-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 NJ56_07040 23975970e2aca8389b934af66efe5420 539 Gene3D G3DSA:3.40.449.10 22 233 4.2E-238 T 15-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 NJ56_07040 23975970e2aca8389b934af66efe5420 539 Gene3D G3DSA:2.170.8.10 46 349 4.2E-238 T 15-10-2018 NJ56_07040 23975970e2aca8389b934af66efe5420 539 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 264 279 - T 15-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 NJ56_07040 23975970e2aca8389b934af66efe5420 539 Gene3D G3DSA:3.90.228.20 234 524 4.2E-238 T 15-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 NJ56_07040 23975970e2aca8389b934af66efe5420 539 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 7 539 1.9E-284 T 15-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 NJ56_07040 23975970e2aca8389b934af66efe5420 539 PIRSF PIRSF006294 3 539 1.7E-230 T 15-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 Gene3D G3DSA:3.40.50.620 33 566 0.0 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 859 0.0 T 15-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 Gene3D G3DSA:1.10.730.10 8 791 0.0 T 15-10-2018 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 4.4E-52 T 15-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 4.4E-52 T 15-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 4.4E-52 T 15-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 4.4E-52 T 15-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 4.4E-52 T 15-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 4.4E-52 T 15-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 4.4E-52 T 15-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 Gene3D G3DSA:3.10.20.590 799 860 3.8E-25 T 15-10-2018 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 Gene3D G3DSA:3.10.330.110 567 628 0.0 T 15-10-2018 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 417 571 9.1E-7 T 15-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 171 1.4E-25 T 15-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 652 2.8E-7 T 15-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 SUPERFAMILY SSF52374 5 668 1.69E-139 T 15-10-2018 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 SUPERFAMILY SSF47323 662 859 2.24E-37 T 15-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 Pfam PF08264 Anticodon-binding domain of tRNA 701 824 5.8E-17 T 15-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 15-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 859 23.303 T 15-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 SUPERFAMILY SSF50677 226 415 5.65E-57 T 15-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 8.2E-78 T 15-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 NJ56_00645 30a3a4970812ae65bc995d9b9df247ae 860 Gene3D G3DSA:3.90.740.10 227 414 0.0 T 15-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 SUPERFAMILY SSF63411 266 503 1.08E-68 T 15-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 Pfam PF05193 Peptidase M16 inactive domain 683 858 3.5E-7 T 15-10-2018 IPR007863 Peptidase M16, C-terminal NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 Pfam PF05193 Peptidase M16 inactive domain 217 393 4.4E-21 T 15-10-2018 IPR007863 Peptidase M16, C-terminal NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 76 99 - T 15-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 Pfam PF00675 Insulinase (Peptidase family M16) 56 192 1.1E-32 T 15-10-2018 IPR011765 Peptidase M16, N-terminal NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 SUPERFAMILY SSF63411 505 729 2.5E-45 T 15-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 Gene3D G3DSA:3.30.830.10 26 272 3.0E-77 T 15-10-2018 NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 Pfam PF16187 Middle or third domain of peptidase_M16 401 676 6.3E-58 T 15-10-2018 IPR032632 Peptidase M16, middle/third domain NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 Gene3D G3DSA:3.30.830.10 273 503 5.9E-69 T 15-10-2018 NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 Gene3D G3DSA:3.30.830.10 653 918 3.2E-125 T 15-10-2018 NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 SUPERFAMILY SSF63411 33 263 3.3E-52 T 15-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 SUPERFAMILY SSF63411 752 957 1.83E-42 T 15-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NJ56_09550 d08fb0562a0f292e543e67076dc38975 962 Gene3D G3DSA:3.30.830.10 505 886 3.2E-125 T 15-10-2018 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 4.5E-83 T 15-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 SUPERFAMILY SSF51246 329 424 6.8E-33 T 15-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 Gene3D G3DSA:3.30.1490.20 122 190 8.1E-28 T 15-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 Gene3D G3DSA:3.40.50.20 2 95 5.5E-37 T 15-10-2018 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 SMART SM01209 103 296 1.2E-140 T 15-10-2018 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 SUPERFAMILY SSF56059 104 323 2.83E-67 T 15-10-2018 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 6.3E-182 T 15-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 43.145 T 15-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 SMART SM01210 330 423 3.9E-55 T 15-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 3.6E-34 T 15-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 Gene3D G3DSA:3.30.470.20 191 329 8.7E-61 T 15-10-2018 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 Gene3D G3DSA:3.90.600.10 330 424 5.4E-34 T 15-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 421 8.3E-29 T 15-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 SUPERFAMILY SSF52440 1 103 6.04E-36 T 15-10-2018 IPR016185 Pre-ATP-grasp domain superfamily NJ56_04680 0ccf0886886b47ab284debce9b4d8431 427 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 15-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_16090 9450bc20247b1f954dd83baee27db578 92 Gene3D G3DSA:2.40.50.970 1 81 6.0E-23 T 15-10-2018 IPR037254 HupF/HypC superfamily NJ56_16090 9450bc20247b1f954dd83baee27db578 92 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 15-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site NJ56_16090 9450bc20247b1f954dd83baee27db578 92 Pfam PF01455 HupF/HypC family 1 72 1.5E-24 T 15-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC NJ56_16090 9450bc20247b1f954dd83baee27db578 92 SUPERFAMILY SSF159127 1 84 1.19E-23 T 15-10-2018 IPR037254 HupF/HypC superfamily NJ56_16090 9450bc20247b1f954dd83baee27db578 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 2.0E-20 T 15-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC NJ56_16090 9450bc20247b1f954dd83baee27db578 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 20 36 2.0E-20 T 15-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC NJ56_16090 9450bc20247b1f954dd83baee27db578 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 63 75 2.0E-20 T 15-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC NJ56_16090 9450bc20247b1f954dd83baee27db578 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 45 61 2.0E-20 T 15-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC NJ56_16090 9450bc20247b1f954dd83baee27db578 92 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 81 2.9E-24 T 15-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC NJ56_13150 4151e132b4b126c099a83827db670197 1324 Gene3D G3DSA:3.20.20.220 220 611 1.2E-160 T 15-10-2018 NJ56_13150 4151e132b4b126c099a83827db670197 1324 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 884 891 - T 15-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 NJ56_13150 4151e132b4b126c099a83827db670197 1324 SUPERFAMILY SSF47598 4 45 1.89E-10 T 15-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 NJ56_13150 4151e132b4b126c099a83827db670197 1324 Gene3D G3DSA:3.40.605.10 636 1112 7.3E-144 T 15-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 NJ56_13150 4151e132b4b126c099a83827db670197 1324 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 149 260 1.9E-45 T 15-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 NJ56_13150 4151e132b4b126c099a83827db670197 1324 SUPERFAMILY SSF81935 89 262 6.41E-65 T 15-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 NJ56_13150 4151e132b4b126c099a83827db670197 1324 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 912 923 - T 15-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 NJ56_13150 4151e132b4b126c099a83827db670197 1324 PIRSF PIRSF000197 75 1324 0.0 T 15-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 NJ56_13150 4151e132b4b126c099a83827db670197 1324 Pfam PF00171 Aldehyde dehydrogenase family 662 1106 1.6E-115 T 15-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 NJ56_13150 4151e132b4b126c099a83827db670197 1324 Gene3D G3DSA:1.10.1220.10 11 52 1.1E-22 T 15-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 NJ56_13150 4151e132b4b126c099a83827db670197 1324 SUPERFAMILY SSF51730 263 619 8.63E-123 T 15-10-2018 IPR029041 FAD-linked oxidoreductase-like NJ56_13150 4151e132b4b126c099a83827db670197 1324 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 611 1115 2.3E-251 T 15-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 NJ56_13150 4151e132b4b126c099a83827db670197 1324 Pfam PF01619 Proline dehydrogenase 271 570 4.5E-100 T 15-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 NJ56_13150 4151e132b4b126c099a83827db670197 1324 Gene3D G3DSA:3.40.309.10 887 1084 7.3E-144 T 15-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 NJ56_13150 4151e132b4b126c099a83827db670197 1324 SUPERFAMILY SSF53720 630 1112 4.84E-129 T 15-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 NJ56_13150 4151e132b4b126c099a83827db670197 1324 Gene3D G3DSA:1.20.5.550 88 139 3.0E-29 T 15-10-2018 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 NJ56_10435 90be1eaef293c1c82f51df3ce0f6ed79 483 SUPERFAMILY SSF55874 329 478 6.42E-33 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_10435 90be1eaef293c1c82f51df3ce0f6ed79 483 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 479 1.6E-15 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_10435 90be1eaef293c1c82f51df3ce0f6ed79 483 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 321 1.3E-13 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_10435 90be1eaef293c1c82f51df3ce0f6ed79 483 SMART SM00387 368 480 5.2E-27 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_10435 90be1eaef293c1c82f51df3ce0f6ed79 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 419 2.4E-7 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_10435 90be1eaef293c1c82f51df3ce0f6ed79 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 458 2.4E-7 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_10435 90be1eaef293c1c82f51df3ce0f6ed79 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 433 2.4E-7 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_10435 90be1eaef293c1c82f51df3ce0f6ed79 483 Gene3D G3DSA:3.30.565.10 329 483 6.9E-32 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_10435 90be1eaef293c1c82f51df3ce0f6ed79 483 SUPERFAMILY SSF47384 240 321 3.73E-16 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_10435 90be1eaef293c1c82f51df3ce0f6ed79 483 Gene3D G3DSA:1.10.287.130 201 321 1.7E-17 T 15-10-2018 NJ56_10435 90be1eaef293c1c82f51df3ce0f6ed79 483 SMART SM00388 257 325 1.5E-16 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_11155 0004d9189622cd5b219ea3e7fd8bdc92 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 311 4.9E-143 T 15-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 NJ56_11155 0004d9189622cd5b219ea3e7fd8bdc92 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 311 1.0E-135 T 15-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 NJ56_11155 0004d9189622cd5b219ea3e7fd8bdc92 322 SUPERFAMILY SSF53686 3 316 1.07E-97 T 15-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NJ56_11155 0004d9189622cd5b219ea3e7fd8bdc92 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 299 6.8E-67 T 15-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme NJ56_11155 0004d9189622cd5b219ea3e7fd8bdc92 322 Gene3D G3DSA:3.40.50.1100 12 306 4.2E-123 T 15-10-2018 NJ56_11155 0004d9189622cd5b219ea3e7fd8bdc92 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 15-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 NJ56_11155 0004d9189622cd5b219ea3e7fd8bdc92 322 Gene3D G3DSA:3.40.50.1100 43 145 4.2E-123 T 15-10-2018 NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 SUPERFAMILY SSF54106 543 586 9.68E-11 T 15-10-2018 NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 SUPERFAMILY SSF54106 471 515 2.62E-10 T 15-10-2018 NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 194 413 1.1E-46 T 15-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 Gene3D G3DSA:3.10.350.10 456 523 2.2E-14 T 15-10-2018 IPR036779 LysM domain superfamily NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 Gene3D G3DSA:3.10.350.10 531 588 2.7E-16 T 15-10-2018 IPR036779 LysM domain superfamily NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 SMART SM00646 254 413 9.2E-70 T 15-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 Gene3D G3DSA:2.60.40.3500 22 133 1.7E-15 T 15-10-2018 NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 Pfam PF11741 AMIN domain 34 122 8.2E-9 T 15-10-2018 IPR021731 AMIN domain NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 Gene3D G3DSA:3.40.630.40 180 423 1.6E-68 T 15-10-2018 NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 SUPERFAMILY SSF53187 192 416 1.19E-50 T 15-10-2018 NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 Pfam PF01476 LysM domain 473 515 1.5E-11 T 15-10-2018 IPR018392 LysM domain NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 Pfam PF01476 LysM domain 544 586 2.2E-13 T 15-10-2018 IPR018392 LysM domain NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 SMART SM00257 472 515 1.4E-12 T 15-10-2018 IPR018392 LysM domain NJ56_04115 fd28ef3e354a55829364c83263c1f354 588 SMART SM00257 543 586 2.5E-16 T 15-10-2018 IPR018392 LysM domain NJ56_15020 f13bd2d325b3eff1143c2da87ae5f16c 486 SUPERFAMILY SSF53167 11 486 2.23E-156 T 15-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 NJ56_15020 f13bd2d325b3eff1143c2da87ae5f16c 486 Pfam PF01048 Phosphorylase superfamily 269 433 1.4E-18 T 15-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 NJ56_15020 f13bd2d325b3eff1143c2da87ae5f16c 486 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 13 486 1.0E-222 T 15-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 NJ56_15020 f13bd2d325b3eff1143c2da87ae5f16c 486 Gene3D G3DSA:3.30.1730.10 4 174 5.4E-57 T 15-10-2018 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 NJ56_15020 f13bd2d325b3eff1143c2da87ae5f16c 486 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 14 165 6.4E-49 T 15-10-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 NJ56_15020 f13bd2d325b3eff1143c2da87ae5f16c 486 Hamap MF_01932 AMP nucleosidase [amn]. 5 486 57.98 T 15-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 NJ56_15020 f13bd2d325b3eff1143c2da87ae5f16c 486 Gene3D G3DSA:3.40.50.1580 175 486 1.7E-114 T 15-10-2018 NJ56_17950 07308755a63dd60fe9e0127ed9402a2f 210 Pfam PF01464 Transglycosylase SLT domain 26 142 8.0E-18 T 15-10-2018 IPR008258 Transglycosylase SLT domain 1 NJ56_17950 07308755a63dd60fe9e0127ed9402a2f 210 SUPERFAMILY SSF53955 19 133 5.35E-26 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_17950 07308755a63dd60fe9e0127ed9402a2f 210 Gene3D G3DSA:1.10.530.10 20 162 2.0E-16 T 15-10-2018 NJ56_01465 efbe8efe1b06118d5d7e8706f3b2f728 412 Gene3D G3DSA:3.40.190.10 125 240 1.5E-27 T 15-10-2018 NJ56_01465 efbe8efe1b06118d5d7e8706f3b2f728 412 Gene3D G3DSA:3.40.190.10 58 292 1.5E-27 T 15-10-2018 NJ56_01465 efbe8efe1b06118d5d7e8706f3b2f728 412 Pfam PF13343 Bacterial extracellular solute-binding protein 73 301 2.1E-25 T 15-10-2018 NJ56_01465 efbe8efe1b06118d5d7e8706f3b2f728 412 SUPERFAMILY SSF53850 23 324 3.4E-36 T 15-10-2018 NJ56_02010 5d33ffa3dbaafc9e7c9b36bbb03ea252 547 Pfam PF05683 Fumarase C-terminus 332 536 1.2E-92 T 15-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 NJ56_02010 5d33ffa3dbaafc9e7c9b36bbb03ea252 547 PIRSF PIRSF001394 30 547 1.5E-228 T 15-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 NJ56_02010 5d33ffa3dbaafc9e7c9b36bbb03ea252 547 Gene3D G3DSA:3.20.130.10 347 536 2.4E-57 T 15-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 NJ56_02010 5d33ffa3dbaafc9e7c9b36bbb03ea252 547 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 75 323 9.6E-32 T 15-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 NJ56_02010 5d33ffa3dbaafc9e7c9b36bbb03ea252 547 ProSitePatterns PS00163 Fumarate lyases signature. 456 465 - T 15-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 NJ56_02010 5d33ffa3dbaafc9e7c9b36bbb03ea252 547 SUPERFAMILY SSF117457 361 536 4.45E-61 T 15-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 NJ56_02010 5d33ffa3dbaafc9e7c9b36bbb03ea252 547 Pfam PF05681 Fumarate hydratase (Fumerase) 51 325 1.3E-84 T 15-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 NJ56_02010 5d33ffa3dbaafc9e7c9b36bbb03ea252 547 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 373 536 4.5E-60 T 15-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 NJ56_02985 3f1c202c8c40b27718d276baccbd1ca9 298 Gene3D G3DSA:1.10.10.10 5 95 1.8E-17 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_02985 3f1c202c8c40b27718d276baccbd1ca9 298 Gene3D G3DSA:3.40.190.10 171 267 3.4E-7 T 15-10-2018 NJ56_02985 3f1c202c8c40b27718d276baccbd1ca9 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.2E-15 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_02985 3f1c202c8c40b27718d276baccbd1ca9 298 Gene3D G3DSA:3.40.190.10 99 283 3.4E-7 T 15-10-2018 NJ56_02985 3f1c202c8c40b27718d276baccbd1ca9 298 SUPERFAMILY SSF53850 92 289 1.16E-25 T 15-10-2018 NJ56_02985 3f1c202c8c40b27718d276baccbd1ca9 298 Pfam PF03466 LysR substrate binding domain 98 287 1.8E-11 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_02985 3f1c202c8c40b27718d276baccbd1ca9 298 SUPERFAMILY SSF46785 1 87 4.23E-19 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_08900 3ec4251a943ebace4e41ff4ba6fec39c 439 Gene3D G3DSA:2.60.40.10 11 164 1.2E-48 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_08900 3ec4251a943ebace4e41ff4ba6fec39c 439 Pfam PF00756 Putative esterase 198 425 4.1E-37 T 15-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 NJ56_08900 3ec4251a943ebace4e41ff4ba6fec39c 439 Gene3D G3DSA:3.40.50.1820 167 434 3.9E-65 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_08900 3ec4251a943ebace4e41ff4ba6fec39c 439 SUPERFAMILY SSF53474 190 428 8.58E-47 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_08900 3ec4251a943ebace4e41ff4ba6fec39c 439 Pfam PF11806 Domain of unknown function (DUF3327) 46 175 8.3E-37 T 15-10-2018 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 NJ56_08900 3ec4251a943ebace4e41ff4ba6fec39c 439 SUPERFAMILY SSF81296 17 167 6.86E-42 T 15-10-2018 IPR014756 Immunoglobulin E-set NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 ProSitePatterns PS00213 Lipocalin signature. 32 45 - T 15-10-2018 IPR022272 Lipocalin family conserved site NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 SUPERFAMILY SSF50814 10 175 6.86E-50 T 15-10-2018 IPR012674 Calycin NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 Pfam PF08212 Lipocalin-like domain 34 173 8.3E-43 T 15-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 Gene3D G3DSA:2.40.128.20 7 175 2.3E-56 T 15-10-2018 IPR012674 Calycin NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 PIRSF PIRSF036893 3 177 1.8E-48 T 15-10-2018 IPR022271 Lipocalin, ApoD type NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 PRINTS PR01171 Bacterial lipocalin signature 69 78 9.0E-42 T 15-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 PRINTS PR01171 Bacterial lipocalin signature 162 172 9.0E-42 T 15-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 PRINTS PR01171 Bacterial lipocalin signature 50 66 9.0E-42 T 15-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 PRINTS PR01171 Bacterial lipocalin signature 135 146 9.0E-42 T 15-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 PRINTS PR01171 Bacterial lipocalin signature 103 117 9.0E-42 T 15-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 PRINTS PR01171 Bacterial lipocalin signature 120 128 9.0E-42 T 15-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 NJ56_04195 bda05e62d4c0b24c5988648d774d7588 180 PRINTS PR01171 Bacterial lipocalin signature 33 47 9.0E-42 T 15-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 NJ56_00755 1cd2fb558790296dd4f79d050a3ad548 89 Gene3D G3DSA:3.30.1660.10 20 89 3.3E-14 T 15-10-2018 IPR025543 Dodecin-like NJ56_00755 1cd2fb558790296dd4f79d050a3ad548 89 SUPERFAMILY SSF159871 1 89 7.72E-21 T 15-10-2018 IPR036275 YdgH-like superfamily NJ56_00755 1cd2fb558790296dd4f79d050a3ad548 89 Pfam PF07338 Protein of unknown function (DUF1471) 34 89 4.1E-12 T 15-10-2018 IPR010854 Domain of unknown function DUF1471 NJ56_01945 7424946f0955f753c716be1f037cddc7 519 SUPERFAMILY SSF55931 4 514 6.54E-204 T 15-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 NJ56_01945 7424946f0955f753c716be1f037cddc7 519 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 519 227.799 T 15-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 NJ56_01945 7424946f0955f753c716be1f037cddc7 519 Pfam PF04262 Glutamate-cysteine ligase 10 380 3.3E-173 T 15-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 NJ56_01945 7424946f0955f753c716be1f037cddc7 519 Gene3D G3DSA:3.30.590.20 17 518 2.5E-189 T 15-10-2018 NJ56_01945 7424946f0955f753c716be1f037cddc7 519 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 6 515 3.6E-254 T 15-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 NJ56_09990 36ac4b9ed3d16d523f895a94eb6f18c9 110 Pfam PF04899 MbeD/MobD like 1 58 2.7E-8 T 15-10-2018 IPR006983 MbeD/MobD-like NJ56_03720 a4c7ced0d2c864624daa61a6e68072c2 173 PIRSF PIRSF025550 1 173 1.0E-82 T 15-10-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT NJ56_03720 a4c7ced0d2c864624daa61a6e68072c2 173 Pfam PF02036 SCP-2 sterol transfer family 44 133 3.8E-20 T 15-10-2018 IPR003033 SCP2 sterol-binding domain NJ56_03720 a4c7ced0d2c864624daa61a6e68072c2 173 Gene3D G3DSA:3.30.1050.10 53 139 3.0E-9 T 15-10-2018 IPR036527 SCP2 sterol-binding domain superfamily NJ56_03720 a4c7ced0d2c864624daa61a6e68072c2 173 SUPERFAMILY SSF55718 42 137 1.12E-23 T 15-10-2018 IPR036527 SCP2 sterol-binding domain superfamily NJ56_04185 c2b52982145b9b85cbf39184aae29fcf 130 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 8 111 2.0E-42 T 15-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 NJ56_04185 c2b52982145b9b85cbf39184aae29fcf 130 Gene3D G3DSA:1.20.1300.10 2 130 6.4E-52 T 15-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04185 c2b52982145b9b85cbf39184aae29fcf 130 SUPERFAMILY SSF81343 2 129 5.56E-57 T 15-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_04185 c2b52982145b9b85cbf39184aae29fcf 130 Pfam PF02300 Fumarate reductase subunit C 3 128 4.4E-55 T 15-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 NJ56_04185 c2b52982145b9b85cbf39184aae29fcf 130 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 2 128 28.768 T 15-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 NJ56_04185 c2b52982145b9b85cbf39184aae29fcf 130 PIRSF PIRSF000180 2 130 1.3E-57 T 15-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 NJ56_08740 10b7d50655ffdc89a4958d6dae451422 193 Pfam PF05728 Uncharacterised protein family (UPF0227) 4 188 3.0E-69 T 15-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA NJ56_08740 10b7d50655ffdc89a4958d6dae451422 193 SUPERFAMILY SSF53474 3 188 6.76E-18 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_08740 10b7d50655ffdc89a4958d6dae451422 193 Gene3D G3DSA:3.40.50.1820 1 193 2.1E-62 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 SUPERFAMILY SSF53098 10 397 7.59E-94 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 Gene3D G3DSA:1.10.132.60 648 792 2.1E-61 T 15-10-2018 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 SMART SM00486 156 563 1.4E-68 T 15-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 423 436 7.2E-10 T 15-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 549 557 7.2E-10 T 15-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 497 509 7.2E-10 T 15-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 SUPERFAMILY SSF56672 393 786 8.9E-117 T 15-10-2018 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 Pfam PF03104 DNA polymerase family B, exonuclease domain 82 171 2.1E-6 T 15-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 Pfam PF03104 DNA polymerase family B, exonuclease domain 212 304 3.2E-6 T 15-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 Gene3D G3DSA:3.30.420.10 159 355 2.0E-73 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 ProSitePatterns PS00116 DNA polymerase family B signature. 551 559 - T 15-10-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 Pfam PF00136 DNA polymerase family B 386 747 2.6E-41 T 15-10-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 Gene3D G3DSA:3.30.70.2250 47 113 1.1E-54 T 15-10-2018 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 Gene3D G3DSA:3.90.1600.10 356 458 1.0E-29 T 15-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 Gene3D G3DSA:3.90.1600.10 459 641 1.7E-56 T 15-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_02860 09d99ec47de7a5fcfd276ca363df1411 792 Gene3D G3DSA:2.40.50.590 12 156 1.1E-54 T 15-10-2018 NJ56_06380 6197d6849ba110dc080dca27f923de89 46 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.263 T 15-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_06380 6197d6849ba110dc080dca27f923de89 46 Pfam PF00468 Ribosomal protein L34 1 44 1.4E-22 T 15-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_06380 6197d6849ba110dc080dca27f923de89 46 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 6.0E-14 T 15-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_06380 6197d6849ba110dc080dca27f923de89 46 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 1.7E-25 T 15-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_06380 6197d6849ba110dc080dca27f923de89 46 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 15-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_13210 2f8ebf269222e16d0e706ff3f0536d8d 182 Gene3D G3DSA:1.20.120.1760 4 175 1.5E-14 T 15-10-2018 NJ56_13210 2f8ebf269222e16d0e706ff3f0536d8d 182 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 3.2E-17 T 15-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NJ56_13210 2f8ebf269222e16d0e706ff3f0536d8d 182 PIRSF PIRSF000847 1 181 2.3E-43 T 15-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 NJ56_13210 2f8ebf269222e16d0e706ff3f0536d8d 182 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 15-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NJ56_13210 2f8ebf269222e16d0e706ff3f0536d8d 182 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 180 2.2E-60 T 15-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 NJ56_00295 9b575ad0886eefdfa1c7ea7fbc6e9896 228 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 4 224 43.25 T 15-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 NJ56_00295 9b575ad0886eefdfa1c7ea7fbc6e9896 228 TIGRFAM TIGR02796 tolQ: protein TolQ 5 219 4.9E-93 T 15-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 NJ56_00295 9b575ad0886eefdfa1c7ea7fbc6e9896 228 Pfam PF01618 MotA/TolQ/ExbB proton channel family 79 207 5.3E-41 T 15-10-2018 IPR002898 MotA/TolQ/ExbB proton channel NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 Gene3D G3DSA:3.40.50.1980 49 206 1.4E-56 T 15-10-2018 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 SUPERFAMILY SSF53807 47 319 6.38E-92 T 15-10-2018 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00691 Adhesin B signature 75 93 5.7E-37 T 15-10-2018 IPR006129 Adhesin B GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00691 Adhesin B signature 50 71 5.7E-37 T 15-10-2018 IPR006129 Adhesin B GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00691 Adhesin B signature 94 113 5.7E-37 T 15-10-2018 IPR006129 Adhesin B GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00691 Adhesin B signature 205 222 5.7E-37 T 15-10-2018 IPR006129 Adhesin B GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00691 Adhesin B signature 231 249 5.7E-37 T 15-10-2018 IPR006129 Adhesin B GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00691 Adhesin B signature 254 271 5.7E-37 T 15-10-2018 IPR006129 Adhesin B GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00691 Adhesin B signature 276 294 5.7E-37 T 15-10-2018 IPR006129 Adhesin B GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 Gene3D G3DSA:3.40.50.1980 207 320 9.9E-41 T 15-10-2018 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00690 Adhesin family signature 205 226 1.8E-44 T 15-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00690 Adhesin family signature 284 303 1.8E-44 T 15-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00690 Adhesin family signature 50 68 1.8E-44 T 15-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00690 Adhesin family signature 81 94 1.8E-44 T 15-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00690 Adhesin family signature 258 276 1.8E-44 T 15-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 PRINTS PR00690 Adhesin family signature 94 111 1.8E-44 T 15-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 NJ56_14200 3c99d0dd2ff28f7d5ba2e1b836e1d558 320 Pfam PF01297 Zinc-uptake complex component A periplasmic 53 316 4.4E-78 T 15-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 NJ56_16420 f9a5afbbeaa6024a4b474c72ff5944b6 306 Pfam PF00480 ROK family 2 299 3.9E-68 T 15-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 NJ56_16420 f9a5afbbeaa6024a4b474c72ff5944b6 306 SUPERFAMILY SSF53067 1 300 1.6E-57 T 15-10-2018 NJ56_16420 f9a5afbbeaa6024a4b474c72ff5944b6 306 ProSitePatterns PS01125 ROK family signature. 129 156 - T 15-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 NJ56_16420 f9a5afbbeaa6024a4b474c72ff5944b6 306 Gene3D G3DSA:3.30.420.40 118 289 2.3E-88 T 15-10-2018 NJ56_16420 f9a5afbbeaa6024a4b474c72ff5944b6 306 Hamap MF_01271 N-acetyl-D-glucosamine kinase [nagK]. 1 303 64.816 T 15-10-2018 IPR023505 N-acetyl-D-glucosamine kinase GO:0045127 KEGG: 00520+2.7.1.59|MetaCyc: PWY-6517|MetaCyc: PWY-6906 NJ56_16420 f9a5afbbeaa6024a4b474c72ff5944b6 306 Gene3D G3DSA:3.30.420.40 4 296 2.3E-88 T 15-10-2018 NJ56_12395 5e8d12d29c24632a17daa306c74c038f 462 Pfam PF13520 Amino acid permease 53 421 5.5E-33 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_12395 5e8d12d29c24632a17daa306c74c038f 462 Gene3D G3DSA:1.20.1740.10 21 456 1.2E-63 T 15-10-2018 NJ56_12395 5e8d12d29c24632a17daa306c74c038f 462 PIRSF PIRSF006060 5 458 3.6E-73 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_07925 a6234c37464b3902785084754392739b 213 SUPERFAMILY SSF53056 1 202 1.57E-65 T 15-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 NJ56_07925 a6234c37464b3902785084754392739b 213 Gene3D G3DSA:3.40.1050.10 1 201 9.7E-70 T 15-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 NJ56_07925 a6234c37464b3902785084754392739b 213 SMART SM00947 27 193 2.5E-66 T 15-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NJ56_07925 a6234c37464b3902785084754392739b 213 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 15-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NJ56_07925 a6234c37464b3902785084754392739b 213 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 15-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NJ56_07925 a6234c37464b3902785084754392739b 213 Pfam PF00484 Carbonic anhydrase 34 188 4.5E-49 T 15-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NJ56_09140 816f59bb6d4407ddc7a8e15af057dd84 319 Hamap MF_00162 Glutathione synthetase [gshB]. 1 317 181.683 T 15-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 NJ56_09140 816f59bb6d4407ddc7a8e15af057dd84 319 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 9.3E-46 T 15-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 NJ56_09140 816f59bb6d4407ddc7a8e15af057dd84 319 SUPERFAMILY SSF56059 123 313 2.43E-57 T 15-10-2018 NJ56_09140 816f59bb6d4407ddc7a8e15af057dd84 319 Gene3D G3DSA:3.40.50.20 7 114 3.1E-120 T 15-10-2018 NJ56_09140 816f59bb6d4407ddc7a8e15af057dd84 319 SUPERFAMILY SSF52440 2 122 2.88E-45 T 15-10-2018 IPR016185 Pre-ATP-grasp domain superfamily NJ56_09140 816f59bb6d4407ddc7a8e15af057dd84 319 Gene3D G3DSA:3.30.1490.20 137 201 3.1E-120 T 15-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 NJ56_09140 816f59bb6d4407ddc7a8e15af057dd84 319 Gene3D G3DSA:3.30.470.20 115 295 3.1E-120 T 15-10-2018 NJ56_09140 816f59bb6d4407ddc7a8e15af057dd84 319 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 3.4E-80 T 15-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 NJ56_09140 816f59bb6d4407ddc7a8e15af057dd84 319 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 313 1.1E-137 T 15-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 NJ56_00550 0603b63cf1adf0c3824f0101ba743481 554 SUPERFAMILY SSF56235 1 196 5.15E-57 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_00550 0603b63cf1adf0c3824f0101ba743481 554 Pfam PF13537 Glutamine amidotransferase domain 48 165 1.8E-40 T 15-10-2018 IPR017932 Glutamine amidotransferase type 2 domain NJ56_00550 0603b63cf1adf0c3824f0101ba743481 554 PIRSF PIRSF001589 1 368 2.9E-108 T 15-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 NJ56_00550 0603b63cf1adf0c3824f0101ba743481 554 PIRSF PIRSF001589 363 507 4.0E-26 T 15-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 NJ56_00550 0603b63cf1adf0c3824f0101ba743481 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 372 1.2E-122 T 15-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 NJ56_00550 0603b63cf1adf0c3824f0101ba743481 554 SUPERFAMILY SSF52402 210 483 3.93E-73 T 15-10-2018 NJ56_00550 0603b63cf1adf0c3824f0101ba743481 554 Pfam PF00733 Asparagine synthase 212 366 2.0E-58 T 15-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 NJ56_00550 0603b63cf1adf0c3824f0101ba743481 554 Gene3D G3DSA:3.40.50.620 194 514 4.1E-114 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_00550 0603b63cf1adf0c3824f0101ba743481 554 Gene3D G3DSA:3.60.20.10 2 193 3.7E-74 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_17880 d3b1b03188d81a83250d72ab5e9f8676 497 Pfam PF12083 Domain of unknown function (DUF3560) 236 357 6.0E-40 T 15-10-2018 IPR021944 Protein of unknown function DUF3560 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 2.1E-77 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 2.1E-77 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 2.1E-77 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 2.1E-77 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 2.1E-77 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 2.1E-77 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 2.1E-77 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 Gene3D G3DSA:3.20.20.60 4 332 5.6E-145 T 15-10-2018 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 1.8E-185 T 15-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 15-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 341 3.3E-152 T 15-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 Gene3D G3DSA:3.40.1380.20 336 467 5.5E-45 T 15-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 SUPERFAMILY SSF50800 70 167 2.44E-29 T 15-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 7.2E-28 T 15-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 SUPERFAMILY SSF51621 1 338 5.58E-100 T 15-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 SUPERFAMILY SSF52935 323 469 1.09E-34 T 15-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_14485 2efedda24dc719f9b28e8646e532588f 470 Gene3D G3DSA:2.40.33.10 71 167 5.6E-145 T 15-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 NJ56_07500 468d05e6d8d9a76f42fa1307ee71e374 141 Gene3D G3DSA:1.10.1660.10 1 129 2.3E-37 T 15-10-2018 NJ56_07500 468d05e6d8d9a76f42fa1307ee71e374 141 Pfam PF13411 MerR HTH family regulatory protein 3 69 6.3E-21 T 15-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NJ56_07500 468d05e6d8d9a76f42fa1307ee71e374 141 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 131 5.8E-68 T 15-10-2018 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 NJ56_07500 468d05e6d8d9a76f42fa1307ee71e374 141 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 15-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NJ56_07500 468d05e6d8d9a76f42fa1307ee71e374 141 SUPERFAMILY SSF46955 2 121 3.52E-34 T 15-10-2018 IPR009061 Putative DNA-binding domain superfamily NJ56_07500 468d05e6d8d9a76f42fa1307ee71e374 141 SMART SM00422 2 71 1.0E-31 T 15-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NJ56_07500 468d05e6d8d9a76f42fa1307ee71e374 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 4.1E-13 T 15-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NJ56_07500 468d05e6d8d9a76f42fa1307ee71e374 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 4.1E-13 T 15-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NJ56_07500 468d05e6d8d9a76f42fa1307ee71e374 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 4.1E-13 T 15-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NJ56_02215 1ecfdc033b00e59dd0255c0082abe192 428 Pfam PF09480 Type III secretion system protein PrgH-EprH (PrgH) 43 426 1.8E-55 T 15-10-2018 IPR019029 Type III secretion system, PrgH/EprH-like GO:0016021 NJ56_02215 1ecfdc033b00e59dd0255c0082abe192 428 Gene3D G3DSA:3.30.70.1770 333 400 8.1E-14 T 15-10-2018 NJ56_05190 8bc53c0bb8cc09125e008d139d8ea27c 267 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 260 1.0E-61 T 15-10-2018 NJ56_05190 8bc53c0bb8cc09125e008d139d8ea27c 267 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 231 2.6E-27 T 15-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 NJ56_05190 8bc53c0bb8cc09125e008d139d8ea27c 267 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 15-10-2018 NJ56_05190 8bc53c0bb8cc09125e008d139d8ea27c 267 Gene3D G3DSA:3.40.50.1000 5 256 1.1E-80 T 15-10-2018 IPR023214 HAD superfamily NJ56_05190 8bc53c0bb8cc09125e008d139d8ea27c 267 SUPERFAMILY SSF56784 1 265 5.71E-69 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_05190 8bc53c0bb8cc09125e008d139d8ea27c 267 Gene3D G3DSA:3.30.1240.10 82 186 1.1E-80 T 15-10-2018 NJ56_05190 8bc53c0bb8cc09125e008d139d8ea27c 267 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 260 6.3E-63 T 15-10-2018 IPR000150 Cof family GO:0016787 NJ56_05190 8bc53c0bb8cc09125e008d139d8ea27c 267 ProSitePatterns PS01229 Hypothetical cof family signature 2. 212 234 - T 15-10-2018 NJ56_11305 169b51357aacbb7753aa8d84d3ed5903 146 SUPERFAMILY SSF143100 4 63 1.96E-6 T 15-10-2018 IPR035069 TTHA1013/TTHA0281-like NJ56_11305 169b51357aacbb7753aa8d84d3ed5903 146 Pfam PF15970 HicB_like antitoxin of bacterial toxin-antitoxin system 3 83 9.9E-36 T 15-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system NJ56_11305 169b51357aacbb7753aa8d84d3ed5903 146 Gene3D G3DSA:3.30.160.250 1 87 3.0E-6 T 15-10-2018 NJ56_06915 31336a51c2191d7166ce66366a5177b8 425 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 17 423 53.066 T 15-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 NJ56_06915 31336a51c2191d7166ce66366a5177b8 425 Gene3D G3DSA:2.160.10.10 301 425 3.5E-40 T 15-10-2018 NJ56_06915 31336a51c2191d7166ce66366a5177b8 425 Pfam PF00483 Nucleotidyl transferase 22 291 9.3E-69 T 15-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 NJ56_06915 31336a51c2191d7166ce66366a5177b8 425 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 113 121 - T 15-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 NJ56_06915 31336a51c2191d7166ce66366a5177b8 425 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 21 397 6.0E-156 T 15-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 NJ56_06915 31336a51c2191d7166ce66366a5177b8 425 SUPERFAMILY SSF51161 313 414 6.24E-19 T 15-10-2018 IPR011004 Trimeric LpxA-like superfamily NJ56_06915 31336a51c2191d7166ce66366a5177b8 425 SUPERFAMILY SSF53448 20 294 1.82E-77 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_06915 31336a51c2191d7166ce66366a5177b8 425 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 26 45 - T 15-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 NJ56_06915 31336a51c2191d7166ce66366a5177b8 425 Gene3D G3DSA:3.90.550.10 2 300 8.1E-92 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_06915 31336a51c2191d7166ce66366a5177b8 425 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 211 221 - T 15-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 NJ56_13245 e784e010f073815bc9dfb8a756bcfb3c 817 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 200 548 4.9E-85 T 15-10-2018 IPR010090 Phage tail tape measure protein NJ56_13245 e784e010f073815bc9dfb8a756bcfb3c 817 Pfam PF10145 Phage-related minor tail protein 240 440 1.5E-48 T 15-10-2018 IPR010090 Phage tail tape measure protein NJ56_09995 ed55c23145873a02e6b02693c9336125 70 SMART SM00357 6 70 1.5E-30 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_09995 ed55c23145873a02e6b02693c9336125 70 PRINTS PR00050 Cold shock protein signature 43 61 6.3E-18 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_09995 ed55c23145873a02e6b02693c9336125 70 PRINTS PR00050 Cold shock protein signature 7 22 6.3E-18 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_09995 ed55c23145873a02e6b02693c9336125 70 PRINTS PR00050 Cold shock protein signature 28 37 6.3E-18 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_09995 ed55c23145873a02e6b02693c9336125 70 SUPERFAMILY SSF50249 2 69 1.71E-25 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_09995 ed55c23145873a02e6b02693c9336125 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 15-10-2018 IPR019844 Cold-shock conserved site NJ56_09995 ed55c23145873a02e6b02693c9336125 70 PIRSF PIRSF002599 1 70 2.0E-24 T 15-10-2018 IPR012156 Cold shock, CspA GO:0003676 NJ56_09995 ed55c23145873a02e6b02693c9336125 70 Gene3D G3DSA:2.40.50.140 2 69 3.1E-29 T 15-10-2018 NJ56_09995 ed55c23145873a02e6b02693c9336125 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 3.3E-32 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_10045 eba6437412673991e2bc34d65891e696 545 Gene3D G3DSA:3.30.420.460 323 525 5.8E-225 T 15-10-2018 NJ56_10045 eba6437412673991e2bc34d65891e696 545 PIRSF PIRSF000538 2 543 8.4E-75 T 15-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 NJ56_10045 eba6437412673991e2bc34d65891e696 545 SUPERFAMILY SSF53067 280 532 3.09E-54 T 15-10-2018 NJ56_10045 eba6437412673991e2bc34d65891e696 545 TIGRFAM TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase 5 537 2.8E-210 T 15-10-2018 IPR006003 FGGY carbohydrate kinase, pentulose kinase GO:0005975|GO:0016773 NJ56_10045 eba6437412673991e2bc34d65891e696 545 SUPERFAMILY SSF53067 4 263 3.02E-60 T 15-10-2018 NJ56_10045 eba6437412673991e2bc34d65891e696 545 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 262 2.3E-30 T 15-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 NJ56_10045 eba6437412673991e2bc34d65891e696 545 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 282 489 1.2E-38 T 15-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 NJ56_10045 eba6437412673991e2bc34d65891e696 545 Gene3D G3DSA:3.30.420.40 5 513 5.8E-225 T 15-10-2018 NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 Gene3D G3DSA:3.40.50.720 1 235 1.2E-64 T 15-10-2018 NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 7.9E-9 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 7.9E-9 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 7.9E-9 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 SUPERFAMILY SSF51735 2 231 7.68E-60 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 6.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 6.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 6.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 6.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 6.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 6.1E-21 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 15-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NJ56_15050 fc32f36f0ca61f53ce9e879b53e0b034 249 Pfam PF00106 short chain dehydrogenase 2 186 3.1E-51 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_15075 bd65ba794da0e27cccb53a2024a52ec4 222 Gene3D G3DSA:3.40.50.300 3 220 2.9E-53 T 15-10-2018 NJ56_15075 bd65ba794da0e27cccb53a2024a52ec4 222 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 214 24.256 T 15-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 NJ56_15075 bd65ba794da0e27cccb53a2024a52ec4 222 Pfam PF13500 AAA domain 4 205 2.6E-29 T 15-10-2018 NJ56_15075 bd65ba794da0e27cccb53a2024a52ec4 222 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 172 5.2E-42 T 15-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 NJ56_15075 bd65ba794da0e27cccb53a2024a52ec4 222 PIRSF PIRSF006755 1 221 7.5E-64 T 15-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 NJ56_15075 bd65ba794da0e27cccb53a2024a52ec4 222 SUPERFAMILY SSF52540 1 207 6.64E-54 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16950 b3c2f535d8368188411a022f5f294fd4 285 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 26 280 6.9E-94 T 15-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 NJ56_16950 b3c2f535d8368188411a022f5f294fd4 285 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 14 279 3.6E-131 T 15-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 NJ56_16950 b3c2f535d8368188411a022f5f294fd4 285 Pfam PF01226 Formate/nitrite transporter 15 276 4.3E-76 T 15-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 NJ56_16950 b3c2f535d8368188411a022f5f294fd4 285 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 168 178 - T 15-10-2018 IPR024002 Formate/nitrite transporter, conserved site NJ56_16950 b3c2f535d8368188411a022f5f294fd4 285 Gene3D G3DSA:1.20.1080.10 1 268 7.0E-105 T 15-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 NJ56_16950 b3c2f535d8368188411a022f5f294fd4 285 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 83 92 - T 15-10-2018 IPR024002 Formate/nitrite transporter, conserved site NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 Pfam PF14814 Bifunctional transglycosylase second domain 123 207 2.2E-29 T 15-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 Gene3D G3DSA:3.30.2060.10 121 210 1.1E-266 T 15-10-2018 NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 Gene3D G3DSA:1.10.3810.10 211 414 1.1E-266 T 15-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 Pfam PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal 1 89 1.1E-27 T 15-10-2018 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 Gene3D G3DSA:1.20.5.100 64 106 2.5E-19 T 15-10-2018 NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 78 804 0.0 T 15-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 SUPERFAMILY SSF53955 207 413 2.53E-65 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 Gene3D G3DSA:3.40.710.10 113 771 1.1E-266 T 15-10-2018 NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 PIRSF PIRSF002799 50 825 0.0 T 15-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 SUPERFAMILY SSF56601 372 796 1.01E-106 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 Pfam PF00912 Transglycosylase 219 390 5.1E-54 T 15-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02460 b05c443ece8195f2f8fb690363179ec2 825 Pfam PF00905 Penicillin binding protein transpeptidase domain 483 729 3.1E-21 T 15-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 NJ56_11655 23c3c089489cae39d45afd60b1de786c 404 Gene3D G3DSA:3.40.640.10 53 294 7.7E-148 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_11655 23c3c089489cae39d45afd60b1de786c 404 Gene3D G3DSA:3.90.1150.10 21 398 7.7E-148 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_11655 23c3c089489cae39d45afd60b1de786c 404 Pfam PF00155 Aminotransferase class I and II 58 387 7.0E-47 T 15-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NJ56_11655 23c3c089489cae39d45afd60b1de786c 404 SUPERFAMILY SSF53383 7 401 5.03E-95 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_08725 87197b565c815b2ce7d3914f01f7be4d 212 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 15 199 3.2E-76 T 15-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 NJ56_08725 87197b565c815b2ce7d3914f01f7be4d 212 Gene3D G3DSA:3.90.79.10 3 209 4.7E-66 T 15-10-2018 NJ56_08725 87197b565c815b2ce7d3914f01f7be4d 212 SUPERFAMILY SSF55811 10 206 1.03E-50 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_08725 87197b565c815b2ce7d3914f01f7be4d 212 ProSitePatterns PS00893 Nudix box signature. 97 118 - T 15-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NJ56_08725 87197b565c815b2ce7d3914f01f7be4d 212 Pfam PF00293 NUDIX domain 59 179 1.4E-12 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_01350 e53dd90094f252e321aff51a9d6628cb 143 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 7 118 6.2E-31 T 15-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 NJ56_01350 e53dd90094f252e321aff51a9d6628cb 143 Pfam PF13279 Thioesterase-like superfamily 12 125 4.5E-17 T 15-10-2018 NJ56_01350 e53dd90094f252e321aff51a9d6628cb 143 Gene3D G3DSA:3.10.129.10 1 130 2.4E-35 T 15-10-2018 NJ56_01350 e53dd90094f252e321aff51a9d6628cb 143 PIRSF PIRSF003230 1 134 5.0E-21 T 15-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 NJ56_01350 e53dd90094f252e321aff51a9d6628cb 143 SUPERFAMILY SSF54637 2 129 3.6E-36 T 15-10-2018 IPR029069 HotDog domain superfamily NJ56_11880 a399d5f3ad58f368d6fb392ff827e62b 178 Pfam PF13302 Acetyltransferase (GNAT) domain 9 149 1.5E-31 T 15-10-2018 IPR000182 GNAT domain NJ56_11880 a399d5f3ad58f368d6fb392ff827e62b 178 SUPERFAMILY SSF55729 1 173 8.47E-47 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_11880 a399d5f3ad58f368d6fb392ff827e62b 178 Gene3D G3DSA:3.40.630.30 2 178 1.2E-43 T 15-10-2018 NJ56_00135 924c528f47e0576023a4bd8d4b11d044 345 SUPERFAMILY SSF102114 5 313 7.19E-94 T 15-10-2018 NJ56_00135 924c528f47e0576023a4bd8d4b11d044 345 SMART SM00876 220 312 2.7E-49 T 15-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 NJ56_00135 924c528f47e0576023a4bd8d4b11d044 345 PIRSF PIRSF001619 1 319 6.3E-139 T 15-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 NJ56_00135 924c528f47e0576023a4bd8d4b11d044 345 Gene3D G3DSA:3.20.20.70 4 315 2.4E-133 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_00135 924c528f47e0576023a4bd8d4b11d044 345 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 6.0E-20 T 15-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 NJ56_00135 924c528f47e0576023a4bd8d4b11d044 345 SMART SM00729 43 255 5.1E-41 T 15-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 NJ56_00135 924c528f47e0576023a4bd8d4b11d044 345 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 6.6E-125 T 15-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 NJ56_00135 924c528f47e0576023a4bd8d4b11d044 345 Pfam PF04055 Radical SAM superfamily 50 202 2.9E-15 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_00135 924c528f47e0576023a4bd8d4b11d044 345 Hamap MF_01694 Biotin synthase [bioB]. 5 313 41.095 T 15-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 NJ56_07105 abeb2bca0b888ce1f675aff98b835582 363 Gene3D G3DSA:3.40.50.1970 1 172 2.0E-64 T 15-10-2018 NJ56_07105 abeb2bca0b888ce1f675aff98b835582 363 PIRSF PIRSF001455 9 358 6.0E-106 T 15-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 NJ56_07105 abeb2bca0b888ce1f675aff98b835582 363 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 351 6.2E-120 T 15-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 NJ56_07105 abeb2bca0b888ce1f675aff98b835582 363 Gene3D G3DSA:1.20.1090.10 173 361 1.4E-63 T 15-10-2018 NJ56_07105 abeb2bca0b888ce1f675aff98b835582 363 Pfam PF01761 3-dehydroquinate synthase 67 326 8.9E-108 T 15-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 NJ56_07105 abeb2bca0b888ce1f675aff98b835582 363 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 361 73.258 T 15-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 NJ56_07105 abeb2bca0b888ce1f675aff98b835582 363 SUPERFAMILY SSF56796 4 357 6.93E-117 T 15-10-2018 NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 445 5.5E-179 T 15-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 SUPERFAMILY SSF46548 336 443 7.06E-22 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 706 245.954 T 15-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 SUPERFAMILY SSF142019 94 303 2.22E-59 T 15-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 Gene3D G3DSA:3.40.50.11540 144 286 9.4E-13 T 15-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 Pfam PF13237 4Fe-4S dicluster domain 373 427 1.4E-10 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 115 8.0E-28 T 15-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 Pfam PF10531 SLBB domain 296 344 5.9E-11 T 15-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 Gene3D G3DSA:1.10.1060.10 366 444 1.7E-11 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 416 427 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 377 388 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_15145 6f2bc1b543f610f9f52cd987339e4b7a 706 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 139 283 1.7E-47 T 15-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 SUPERFAMILY SSF47336 1036 1089 2.49E-11 T 15-10-2018 IPR036736 ACP-like superfamily NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 SUPERFAMILY SSF52777 63 258 1.56E-12 T 15-10-2018 NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 Gene3D G3DSA:3.30.300.30 920 1029 1.1E-33 T 15-10-2018 NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 Gene3D G3DSA:3.30.559.30 245 504 5.2E-61 T 15-10-2018 NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 Gene3D G3DSA:3.40.50.12780 523 918 8.5E-109 T 15-10-2018 NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 PRINTS PR00154 AMP-binding signature 664 675 6.5E-5 T 15-10-2018 IPR020459 AMP-binding NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 PRINTS PR00154 AMP-binding signature 676 684 6.5E-5 T 15-10-2018 IPR020459 AMP-binding NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 Pfam PF00668 Condensation domain 102 507 1.9E-25 T 15-10-2018 IPR001242 Condensation domain NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 Pfam PF00550 Phosphopantetheine attachment site 1043 1091 8.3E-6 T 15-10-2018 IPR009081 Phosphopantetheine binding ACP domain NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 ProSitePatterns PS00455 Putative AMP-binding domain signature. 669 680 - T 15-10-2018 IPR020845 AMP-binding, conserved site NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 SUPERFAMILY SSF56801 501 1052 7.98E-142 T 15-10-2018 NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 Gene3D G3DSA:1.10.1200.10 1030 1115 1.3E-14 T 15-10-2018 IPR036736 ACP-like superfamily NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 552 949 8.5E-120 T 15-10-2018 IPR010071 Amino acid adenylation domain NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 SUPERFAMILY SSF52777 247 498 3.78E-32 T 15-10-2018 NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 Gene3D G3DSA:3.30.559.10 60 243 7.0E-35 T 15-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 Pfam PF13193 AMP-binding enzyme C-terminal domain 934 1014 1.1E-11 T 15-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain NJ56_13895 5706042bd248a976e0e6264c52e18cb3 1123 Pfam PF00501 AMP-binding enzyme 533 925 6.3E-91 T 15-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 306 312 - T 15-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 PIRSF PIRSF037618 1 703 1.4E-296 T 15-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 15-10-2018 IPR000241 Putative RNA methylase domain NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 Gene3D G3DSA:3.30.750.80 392 483 2.7E-36 T 15-10-2018 NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 SUPERFAMILY SSF53335 148 373 1.39E-36 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 448 662 1.1E-19 T 15-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 Gene3D G3DSA:3.30.2130.30 5 255 1.8E-146 T 15-10-2018 NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 4 702 32.291 T 15-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 Pfam PF02926 THUMP domain 23 153 1.3E-16 T 15-10-2018 IPR004114 THUMP domain GO:0003723 NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 Pfam PF01170 Putative RNA methylase family UPF0020 162 375 9.8E-61 T 15-10-2018 IPR000241 Putative RNA methylase domain NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 Gene3D G3DSA:3.40.50.150 484 702 4.8E-73 T 15-10-2018 NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 SUPERFAMILY SSF53335 396 701 6.06E-67 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 SMART SM00981 56 154 3.1E-19 T 15-10-2018 IPR004114 THUMP domain GO:0003723 NJ56_16785 aa53c6a8f9cf36a4bb28b8cfc7d1cadb 706 Gene3D G3DSA:3.40.50.150 169 372 1.8E-146 T 15-10-2018 NJ56_11050 b6ca2aff911284451001bfc1724615d2 220 SUPERFAMILY SSF46785 66 116 2.77E-5 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_01870 4e28296ef9d8ff0a3a5d2650a9fac194 114 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 1.8E-22 T 15-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 NJ56_01870 4e28296ef9d8ff0a3a5d2650a9fac194 114 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 97 3.7E-33 T 15-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 NJ56_01870 4e28296ef9d8ff0a3a5d2650a9fac194 114 Gene3D G3DSA:3.30.160.100 1 106 2.0E-36 T 15-10-2018 IPR036567 Ribosome hibernation promotion factor-like NJ56_01870 4e28296ef9d8ff0a3a5d2650a9fac194 114 SUPERFAMILY SSF69754 3 106 4.05E-32 T 15-10-2018 IPR036567 Ribosome hibernation promotion factor-like NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1047 0.0 T 15-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 SUPERFAMILY SSF82714 724 811 1.44E-21 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 Gene3D G3DSA:1.20.1640.10 516 1026 0.0 T 15-10-2018 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 SUPERFAMILY SSF82693 566 670 7.85E-32 T 15-10-2018 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 SUPERFAMILY SSF82866 807 1034 3.79E-45 T 15-10-2018 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 SUPERFAMILY SSF82693 135 330 1.36E-27 T 15-10-2018 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 Gene3D G3DSA:3.30.2090.10 725 813 0.0 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 Gene3D G3DSA:1.20.1640.10 8 515 0.0 T 15-10-2018 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 Gene3D G3DSA:3.30.70.1440 675 865 0.0 T 15-10-2018 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 Gene3D G3DSA:3.30.70.1430 38 821 0.0 T 15-10-2018 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 Gene3D G3DSA:3.30.70.1430 570 674 0.0 T 15-10-2018 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 Pfam PF00873 AcrB/AcrD/AcrF family 1 1029 0.0 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 SUPERFAMILY SSF82714 182 272 4.45E-21 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.0E-115 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 3.0E-115 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 3.0E-115 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 3.0E-115 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 3.0E-115 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 3.0E-115 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.0E-115 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 3.0E-115 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 3.0E-115 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 SUPERFAMILY SSF82693 38 133 6.54E-27 T 15-10-2018 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 SUPERFAMILY SSF82866 296 497 7.06E-48 T 15-10-2018 NJ56_01260 158ae082469c804c03801a9d1ea8877b 1050 Gene3D G3DSA:3.30.70.1320 133 330 0.0 T 15-10-2018 NJ56_09925 acb37ffe59ac406d441c0c46cc63bf54 170 SUPERFAMILY SSF46785 21 165 1.4E-29 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_09925 acb37ffe59ac406d441c0c46cc63bf54 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 3.7E-22 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_09925 acb37ffe59ac406d441c0c46cc63bf54 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 3.7E-22 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_09925 acb37ffe59ac406d441c0c46cc63bf54 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 3.7E-22 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_09925 acb37ffe59ac406d441c0c46cc63bf54 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 3.7E-22 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_09925 acb37ffe59ac406d441c0c46cc63bf54 170 Pfam PF01047 MarR family 53 112 2.6E-16 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_09925 acb37ffe59ac406d441c0c46cc63bf54 170 Gene3D G3DSA:1.10.10.10 10 164 3.4E-30 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_09925 acb37ffe59ac406d441c0c46cc63bf54 170 SMART SM00347 46 148 3.2E-32 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_09925 acb37ffe59ac406d441c0c46cc63bf54 170 ProSitePatterns PS01117 MarR-type HTH domain signature. 87 121 - T 15-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site NJ56_09680 207829158275644631c1b6978902b656 263 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 15-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 NJ56_09680 207829158275644631c1b6978902b656 263 Pfam PF00557 Metallopeptidase family M24 12 242 4.7E-53 T 15-10-2018 IPR000994 Peptidase M24 NJ56_09680 207829158275644631c1b6978902b656 263 Gene3D G3DSA:3.90.230.10 2 263 1.4E-118 T 15-10-2018 NJ56_09680 207829158275644631c1b6978902b656 263 SUPERFAMILY SSF55920 3 255 1.7E-91 T 15-10-2018 IPR036005 Creatinase/aminopeptidase-like NJ56_09680 207829158275644631c1b6978902b656 263 Hamap MF_01974 Methionine aminopeptidase [map]. 3 251 43.614 T 15-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 NJ56_09680 207829158275644631c1b6978902b656 263 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 250 6.3E-109 T 15-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 NJ56_09680 207829158275644631c1b6978902b656 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 1.5E-23 T 15-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 NJ56_09680 207829158275644631c1b6978902b656 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 1.5E-23 T 15-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 NJ56_09680 207829158275644631c1b6978902b656 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 1.5E-23 T 15-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 NJ56_09680 207829158275644631c1b6978902b656 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 1.5E-23 T 15-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 NJ56_16560 485fe6b071fa42cc53d1808da8576c04 194 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 28.748 T 15-10-2018 IPR003697 Maf-like protein GO:0047429 NJ56_16560 485fe6b071fa42cc53d1808da8576c04 194 SUPERFAMILY SSF52972 2 185 4.12E-57 T 15-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like NJ56_16560 485fe6b071fa42cc53d1808da8576c04 194 Pfam PF02545 Maf-like protein 3 185 3.6E-43 T 15-10-2018 IPR003697 Maf-like protein GO:0047429 NJ56_16560 485fe6b071fa42cc53d1808da8576c04 194 Gene3D G3DSA:3.90.950.10 2 194 6.3E-60 T 15-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like NJ56_16560 485fe6b071fa42cc53d1808da8576c04 194 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 184 3.4E-53 T 15-10-2018 IPR003697 Maf-like protein GO:0047429 NJ56_16560 485fe6b071fa42cc53d1808da8576c04 194 PIRSF PIRSF006305 1 191 8.4E-41 T 15-10-2018 IPR003697 Maf-like protein GO:0047429 NJ56_14260 82bffa4214aa337f1662ab43d1415a5e 118 Gene3D G3DSA:1.10.1900.20 56 118 1.0E-28 T 15-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14260 82bffa4214aa337f1662ab43d1415a5e 118 SUPERFAMILY SSF74731 3 117 4.97E-50 T 15-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14260 82bffa4214aa337f1662ab43d1415a5e 118 Gene3D G3DSA:1.10.720.90 2 55 5.8E-25 T 15-10-2018 NJ56_14260 82bffa4214aa337f1662ab43d1415a5e 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 4.3E-53 T 15-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14260 82bffa4214aa337f1662ab43d1415a5e 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.093 T 15-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14260 82bffa4214aa337f1662ab43d1415a5e 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 15-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14260 82bffa4214aa337f1662ab43d1415a5e 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 2.0E-13 T 15-10-2018 NJ56_14260 82bffa4214aa337f1662ab43d1415a5e 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.2E-42 T 15-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14260 82bffa4214aa337f1662ab43d1415a5e 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.2E-42 T 15-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14260 82bffa4214aa337f1662ab43d1415a5e 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.2E-42 T 15-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14260 82bffa4214aa337f1662ab43d1415a5e 118 Pfam PF00453 Ribosomal protein L20 3 109 9.2E-49 T 15-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_11595 2612544adf02cb8894ac0cdf3d74361a 182 SUPERFAMILY SSF55811 10 167 2.71E-33 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_11595 2612544adf02cb8894ac0cdf3d74361a 182 PIRSF PIRSF017340 2 171 6.6E-67 T 15-10-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 NJ56_11595 2612544adf02cb8894ac0cdf3d74361a 182 Gene3D G3DSA:3.90.79.10 3 178 2.0E-54 T 15-10-2018 NJ56_11595 2612544adf02cb8894ac0cdf3d74361a 182 Pfam PF00293 NUDIX domain 37 151 4.9E-17 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_02630 d98da15becf86f7a64a29428f54bfa85 148 SUPERFAMILY SSF54523 28 135 4.34E-19 T 15-10-2018 NJ56_02630 d98da15becf86f7a64a29428f54bfa85 148 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 1.3E-7 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_02630 d98da15becf86f7a64a29428f54bfa85 148 Gene3D G3DSA:3.30.700.10 7 145 5.1E-22 T 15-10-2018 NJ56_02630 d98da15becf86f7a64a29428f54bfa85 148 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 25 3.6E-9 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_02630 d98da15becf86f7a64a29428f54bfa85 148 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_11470 e9160c6b253582d8d5c3fe533c036d85 677 Pfam PF11412 Disulphide bond corrector protein DsbC 44 146 1.3E-17 T 15-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain NJ56_11470 e9160c6b253582d8d5c3fe533c036d85 677 Pfam PF13899 Thioredoxin-like 563 649 5.2E-15 T 15-10-2018 NJ56_11470 e9160c6b253582d8d5c3fe533c036d85 677 ProSitePatterns PS00194 Thioredoxin family active site. 582 600 - T 15-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 NJ56_11470 e9160c6b253582d8d5c3fe533c036d85 677 Gene3D G3DSA:3.40.30.10 552 659 1.5E-12 T 15-10-2018 NJ56_11470 e9160c6b253582d8d5c3fe533c036d85 677 SUPERFAMILY SSF52833 554 671 1.56E-13 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_07910 b35e1436171a945945031876e6808bbc 307 Pfam PF03466 LysR substrate binding domain 89 289 6.1E-43 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_07910 b35e1436171a945945031876e6808bbc 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.0E-7 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_07910 b35e1436171a945945031876e6808bbc 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.0E-7 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_07910 b35e1436171a945945031876e6808bbc 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.0E-7 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_07910 b35e1436171a945945031876e6808bbc 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 7.9E-22 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_07910 b35e1436171a945945031876e6808bbc 307 SUPERFAMILY SSF53850 90 292 4.4E-42 T 15-10-2018 NJ56_07910 b35e1436171a945945031876e6808bbc 307 Gene3D G3DSA:1.10.10.10 1 91 1.4E-27 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_07910 b35e1436171a945945031876e6808bbc 307 SUPERFAMILY SSF46785 1 85 1.65E-23 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_07910 b35e1436171a945945031876e6808bbc 307 Gene3D G3DSA:3.40.190.290 92 291 1.1E-48 T 15-10-2018 NJ56_12695 d7843223c25029fcaffe3f208161e870 260 Gene3D G3DSA:1.10.472.150 16 139 8.3E-42 T 15-10-2018 NJ56_12695 d7843223c25029fcaffe3f208161e870 260 Pfam PF06167 Glucose-regulated metallo-peptidase M90 17 242 5.2E-63 T 15-10-2018 IPR010384 MtfA family NJ56_12695 d7843223c25029fcaffe3f208161e870 260 Gene3D G3DSA:3.40.390.10 140 259 1.1E-39 T 15-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 NJ56_12695 d7843223c25029fcaffe3f208161e870 260 SUPERFAMILY SSF55486 34 244 4.03E-40 T 15-10-2018 NJ56_12695 d7843223c25029fcaffe3f208161e870 260 Hamap MF_01593 Protein MtfA [mtfA]. 1 260 62.893 T 15-10-2018 IPR010384 MtfA family NJ56_05710 845a540e80b728fb2e28dca5d9935682 443 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 443 1.2E-231 T 15-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 NJ56_05710 845a540e80b728fb2e28dca5d9935682 443 Gene3D G3DSA:1.10.8.60 335 440 2.8E-41 T 15-10-2018 NJ56_05710 845a540e80b728fb2e28dca5d9935682 443 SMART SM00382 49 332 7.4E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_05710 845a540e80b728fb2e28dca5d9935682 443 SUPERFAMILY SSF52540 3 441 1.16E-94 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05710 845a540e80b728fb2e28dca5d9935682 443 Pfam PF07724 AAA domain (Cdc48 subfamily) 187 329 2.6E-41 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_05710 845a540e80b728fb2e28dca5d9935682 443 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 102 1.1E-6 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_05710 845a540e80b728fb2e28dca5d9935682 443 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 335 405 3.4E-6 T 15-10-2018 IPR019489 Clp ATPase, C-terminal NJ56_05710 845a540e80b728fb2e28dca5d9935682 443 SMART SM01086 335 429 2.2E-24 T 15-10-2018 IPR019489 Clp ATPase, C-terminal NJ56_05710 845a540e80b728fb2e28dca5d9935682 443 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 443 43.617 T 15-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 NJ56_03070 e6362630f474f3d21abc22af7c248028 215 SMART SM00855 3 157 5.9E-23 T 15-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 NJ56_03070 e6362630f474f3d21abc22af7c248028 215 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 15-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 NJ56_03070 e6362630f474f3d21abc22af7c248028 215 SUPERFAMILY SSF53254 1 209 2.63E-55 T 15-10-2018 IPR029033 Histidine phosphatase superfamily NJ56_03070 e6362630f474f3d21abc22af7c248028 215 Hamap MF_01040 Probable phosphoglycerate mutase GpmB [gpmB]. 1 215 54.002 T 15-10-2018 IPR023086 Phosphoglycerate mutase, GpmB, probable GO:0004619|GO:0006096 NJ56_03070 e6362630f474f3d21abc22af7c248028 215 Gene3D G3DSA:3.40.50.1240 1 211 3.1E-55 T 15-10-2018 IPR029033 Histidine phosphatase superfamily NJ56_03070 e6362630f474f3d21abc22af7c248028 215 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 194 4.2E-56 T 15-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 NJ56_03070 e6362630f474f3d21abc22af7c248028 215 PIRSF PIRSF000709 2 172 2.7E-9 T 15-10-2018 NJ56_05585 b314d868fb6ed3925add60043a018f14 108 Pfam PF05534 HicB family 61 102 1.7E-13 T 15-10-2018 IPR008651 Uncharacterised protein family HicB NJ56_05585 b314d868fb6ed3925add60043a018f14 108 SUPERFAMILY SSF143100 6 69 9.42E-8 T 15-10-2018 IPR035069 TTHA1013/TTHA0281-like NJ56_05585 b314d868fb6ed3925add60043a018f14 108 SUPERFAMILY SSF47598 73 106 9.34E-6 T 15-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 NJ56_02550 e094ecc5e5e28cc2ee71b638d5c2bc6f 115 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 22 106 9.6E-10 T 15-10-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like NJ56_02550 e094ecc5e5e28cc2ee71b638d5c2bc6f 115 Gene3D G3DSA:1.20.58.1630 23 114 2.1E-10 T 15-10-2018 IPR038432 PulS/OutS-like superfamily NJ56_02550 e094ecc5e5e28cc2ee71b638d5c2bc6f 115 ProDom PD074041 YACC EXPORTED PRECURSOR SIGNAL PERIPLASMIC Y0776 SIMILAR ECS0126 STY0189 ESCHERICHIA 14 113 3.0E-47 T 15-10-2018 NJ56_03230 632a74278b9b78697475462f318631a7 210 Gene3D G3DSA:1.25.40.340 1 210 1.9E-71 T 15-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 NJ56_03230 632a74278b9b78697475462f318631a7 210 SMART SM01120 32 206 1.2E-81 T 15-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 NJ56_03230 632a74278b9b78697475462f318631a7 210 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 9 205 5.1E-77 T 15-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 NJ56_03230 632a74278b9b78697475462f318631a7 210 SUPERFAMILY SSF101473 3 206 3.53E-58 T 15-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 NJ56_03230 632a74278b9b78697475462f318631a7 210 Pfam PF02734 DAK2 domain 32 205 2.5E-55 T 15-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 Pfam PF00560 Leucine Rich Repeat 271 285 0.99 T 15-10-2018 IPR001611 Leucine-rich repeat GO:0005515 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 Gene3D G3DSA:3.80.10.10 6 298 1.5E-79 T 15-10-2018 IPR032675 Leucine-rich repeat domain superfamily NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00369 268 291 8.4 T 15-10-2018 IPR003591 Leucine-rich repeat, typical subtype NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00369 199 221 0.39 T 15-10-2018 IPR003591 Leucine-rich repeat, typical subtype NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00369 245 267 0.05 T 15-10-2018 IPR003591 Leucine-rich repeat, typical subtype NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00369 222 244 15.0 T 15-10-2018 IPR003591 Leucine-rich repeat, typical subtype NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00369 156 176 31.0 T 15-10-2018 IPR003591 Leucine-rich repeat, typical subtype NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00369 130 153 0.038 T 15-10-2018 IPR003591 Leucine-rich repeat, typical subtype NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00369 107 129 0.015 T 15-10-2018 IPR003591 Leucine-rich repeat, typical subtype NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00369 84 106 0.47 T 15-10-2018 IPR003591 Leucine-rich repeat, typical subtype NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00369 61 83 42.0 T 15-10-2018 IPR003591 Leucine-rich repeat, typical subtype NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00364 107 126 0.27 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00364 61 80 540.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00364 153 172 32.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00364 245 264 22.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00364 199 218 190.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00364 130 149 18.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00364 268 287 25.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00364 222 241 82.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00365 153 184 740.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00365 84 102 140.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00365 199 220 620.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00365 107 129 16.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SMART SM00365 245 270 32.0 T 15-10-2018 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 Pfam PF13855 Leucine rich repeat 178 235 1.1E-10 T 15-10-2018 IPR001611 Leucine-rich repeat GO:0005515 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 Pfam PF13855 Leucine rich repeat 40 97 2.8E-10 T 15-10-2018 IPR001611 Leucine-rich repeat GO:0005515 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 Pfam PF12799 Leucine Rich repeats (2 copies) 108 147 5.4E-8 T 15-10-2018 IPR025875 Leucine rich repeat 4 NJ56_00015 d6da116fe19211d4492d17e0655ff6bf 300 SUPERFAMILY SSF52058 19 288 4.22E-64 T 15-10-2018 NJ56_06980 cbb7d10b432252d87f1161d33d1aca8f 89 SUPERFAMILY SSF159871 3 89 1.26E-22 T 15-10-2018 IPR036275 YdgH-like superfamily NJ56_06980 cbb7d10b432252d87f1161d33d1aca8f 89 Gene3D G3DSA:3.30.1660.10 22 89 6.9E-22 T 15-10-2018 IPR025543 Dodecin-like NJ56_06980 cbb7d10b432252d87f1161d33d1aca8f 89 Pfam PF07338 Protein of unknown function (DUF1471) 39 89 5.2E-19 T 15-10-2018 IPR010854 Domain of unknown function DUF1471 NJ56_02710 3d41ee60f076b083cab2ab45913103b1 491 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 19 481 43.693 T 15-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02710 3d41ee60f076b083cab2ab45913103b1 491 SUPERFAMILY SSF53244 323 476 4.94E-46 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_02710 3d41ee60f076b083cab2ab45913103b1 491 Pfam PF08245 Mur ligase middle domain 124 304 1.3E-26 T 15-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 NJ56_02710 3d41ee60f076b083cab2ab45913103b1 491 Pfam PF01225 Mur ligase family, catalytic domain 21 119 8.9E-30 T 15-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 NJ56_02710 3d41ee60f076b083cab2ab45913103b1 491 Gene3D G3DSA:3.90.190.20 323 491 1.2E-51 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_02710 3d41ee60f076b083cab2ab45913103b1 491 Pfam PF02875 Mur ligase family, glutamate ligase domain 333 417 1.5E-21 T 15-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 NJ56_02710 3d41ee60f076b083cab2ab45913103b1 491 SUPERFAMILY SSF51984 20 106 9.16E-29 T 15-10-2018 NJ56_02710 3d41ee60f076b083cab2ab45913103b1 491 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 21 475 2.9E-184 T 15-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02710 3d41ee60f076b083cab2ab45913103b1 491 Gene3D G3DSA:3.40.50.720 20 107 3.7E-34 T 15-10-2018 NJ56_02710 3d41ee60f076b083cab2ab45913103b1 491 SUPERFAMILY SSF53623 105 322 1.83E-74 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_02710 3d41ee60f076b083cab2ab45913103b1 491 Gene3D G3DSA:3.40.1190.10 108 322 1.8E-88 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_15470 07586680a7a13b5bbf68fb9d86d8cdf8 544 PIRSF PIRSF002741 4 543 1.8E-110 T 15-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 NJ56_15470 07586680a7a13b5bbf68fb9d86d8cdf8 544 Gene3D G3DSA:3.10.105.10 298 513 9.8E-195 T 15-10-2018 NJ56_15470 07586680a7a13b5bbf68fb9d86d8cdf8 544 SUPERFAMILY SSF53850 37 526 9.31E-142 T 15-10-2018 NJ56_15470 07586680a7a13b5bbf68fb9d86d8cdf8 544 Gene3D G3DSA:3.90.76.10 72 195 9.8E-195 T 15-10-2018 NJ56_15470 07586680a7a13b5bbf68fb9d86d8cdf8 544 Gene3D G3DSA:3.40.190.10 43 525 9.8E-195 T 15-10-2018 NJ56_15470 07586680a7a13b5bbf68fb9d86d8cdf8 544 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 464 5.7E-85 T 15-10-2018 IPR000914 Solute-binding protein family 5 domain NJ56_05255 2d489d3f282098d163867abbcb3a38b6 238 SUPERFAMILY SSF56784 10 238 3.58E-39 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_05255 2d489d3f282098d163867abbcb3a38b6 238 Gene3D G3DSA:3.40.50.1000 12 231 1.5E-60 T 15-10-2018 IPR023214 HAD superfamily NJ56_05255 2d489d3f282098d163867abbcb3a38b6 238 Gene3D G3DSA:1.20.120.1600 24 110 1.5E-60 T 15-10-2018 NJ56_05255 2d489d3f282098d163867abbcb3a38b6 238 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 117 201 1.4E-11 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_05255 2d489d3f282098d163867abbcb3a38b6 238 Pfam PF00702 haloacid dehalogenase-like hydrolase 10 196 2.3E-12 T 15-10-2018 NJ56_01345 8422a4286ec4737977e3b365d053dd4f 232 Gene3D G3DSA:3.40.50.620 1 232 2.6E-84 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_01345 8422a4286ec4737977e3b365d053dd4f 232 PIRSF PIRSF006293 1 226 1.2E-85 T 15-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 NJ56_01345 8422a4286ec4737977e3b365d053dd4f 232 SUPERFAMILY SSF52402 1 215 1.92E-68 T 15-10-2018 NJ56_01345 8422a4286ec4737977e3b365d053dd4f 232 Pfam PF06508 Queuosine biosynthesis protein QueC 3 214 1.9E-83 T 15-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 NJ56_01345 8422a4286ec4737977e3b365d053dd4f 232 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 220 50.747 T 15-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 NJ56_01345 8422a4286ec4737977e3b365d053dd4f 232 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 207 1.8E-84 T 15-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 NJ56_05225 5dd02fb288bf3f84a2582e99a5255d00 316 SUPERFAMILY SSF143865 1 255 2.22E-36 T 15-10-2018 NJ56_05225 5dd02fb288bf3f84a2582e99a5255d00 316 Pfam PF01544 CorA-like Mg2+ transporter protein 25 312 1.0E-52 T 15-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 NJ56_05225 5dd02fb288bf3f84a2582e99a5255d00 316 Gene3D G3DSA:1.20.58.340 240 316 6.6E-26 T 15-10-2018 NJ56_05225 5dd02fb288bf3f84a2582e99a5255d00 316 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 3 316 5.7E-107 T 15-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 NJ56_05225 5dd02fb288bf3f84a2582e99a5255d00 316 SUPERFAMILY SSF144083 251 314 1.14E-20 T 15-10-2018 NJ56_13590 2320fc9cfd8af655a17f0bf977357c0a 153 SUPERFAMILY SSF55729 1 148 6.56E-35 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_13590 2320fc9cfd8af655a17f0bf977357c0a 153 Gene3D G3DSA:3.40.630.30 1 148 1.4E-40 T 15-10-2018 NJ56_13590 2320fc9cfd8af655a17f0bf977357c0a 153 Pfam PF13673 Acetyltransferase (GNAT) domain 37 149 5.2E-15 T 15-10-2018 IPR000182 GNAT domain NJ56_05865 87be4883c442e925f12b301ebf76a195 355 Gene3D G3DSA:3.40.50.2000 163 347 1.3E-64 T 15-10-2018 NJ56_05865 87be4883c442e925f12b301ebf76a195 355 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 317 3.5E-81 T 15-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 NJ56_05865 87be4883c442e925f12b301ebf76a195 355 Gene3D G3DSA:3.40.50.2000 1 151 1.7E-60 T 15-10-2018 NJ56_05865 87be4883c442e925f12b301ebf76a195 355 SUPERFAMILY SSF53756 1 345 1.15E-100 T 15-10-2018 NJ56_05865 87be4883c442e925f12b301ebf76a195 355 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 343 2.1E-164 T 15-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 NJ56_16900 6125f30a566d684d7cbab78b2dbbc711 328 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 325 40.327 T 15-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 NJ56_16900 6125f30a566d684d7cbab78b2dbbc711 328 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 19 312 4.8E-103 T 15-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 NJ56_16900 6125f30a566d684d7cbab78b2dbbc711 328 SUPERFAMILY SSF52540 46 181 1.04E-11 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16900 6125f30a566d684d7cbab78b2dbbc711 328 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 13 318 3.7E-114 T 15-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 NJ56_15490 664c354d70749e522f59487e87fb62bd 890 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 632 660 - T 15-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 NJ56_15490 664c354d70749e522f59487e87fb62bd 890 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 850 6.0E-115 T 15-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 NJ56_15490 664c354d70749e522f59487e87fb62bd 890 Gene3D G3DSA:1.20.1090.10 645 865 7.8E-62 T 15-10-2018 NJ56_15490 664c354d70749e522f59487e87fb62bd 890 Gene3D G3DSA:3.40.605.10 10 444 1.4E-180 T 15-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 NJ56_15490 664c354d70749e522f59487e87fb62bd 890 PIRSF PIRSF000111 1 866 0.0 T 15-10-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 NJ56_15490 664c354d70749e522f59487e87fb62bd 890 SUPERFAMILY SSF56796 449 866 6.28E-119 T 15-10-2018 NJ56_15490 664c354d70749e522f59487e87fb62bd 890 Gene3D G3DSA:3.40.50.1970 450 643 2.2E-58 T 15-10-2018 NJ56_15490 664c354d70749e522f59487e87fb62bd 890 Gene3D G3DSA:3.40.309.10 218 404 1.4E-180 T 15-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 NJ56_15490 664c354d70749e522f59487e87fb62bd 890 SUPERFAMILY SSF53720 6 453 3.27E-83 T 15-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 NJ56_15490 664c354d70749e522f59487e87fb62bd 890 Pfam PF00171 Aldehyde dehydrogenase family 5 400 7.9E-28 T 15-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 NJ56_15490 664c354d70749e522f59487e87fb62bd 890 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 720 740 - T 15-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 NJ56_03795 02a80ec34647da79c683acb977d8eb2b 161 SUPERFAMILY SSF75420 12 93 1.05E-24 T 15-10-2018 IPR035956 RimP, N-terminal domain superfamily NJ56_03795 02a80ec34647da79c683acb977d8eb2b 161 Pfam PF02576 RimP N-terminal domain 22 93 3.0E-28 T 15-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal NJ56_03795 02a80ec34647da79c683acb977d8eb2b 161 Pfam PF17384 RimP C-terminal SH3 domain 96 161 1.3E-21 T 15-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal NJ56_03795 02a80ec34647da79c683acb977d8eb2b 161 SUPERFAMILY SSF74942 94 161 1.7E-16 T 15-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily NJ56_03795 02a80ec34647da79c683acb977d8eb2b 161 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 17 161 23.835 T 15-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 NJ56_03795 02a80ec34647da79c683acb977d8eb2b 161 Gene3D G3DSA:3.30.300.70 11 90 3.7E-25 T 15-10-2018 IPR035956 RimP, N-terminal domain superfamily NJ56_00690 c748637ff46dc0634f7fb36b5890ee73 403 Gene3D G3DSA:3.40.710.10 30 291 2.0E-90 T 15-10-2018 NJ56_00690 c748637ff46dc0634f7fb36b5890ee73 403 SMART SM00936 292 383 6.3E-34 T 15-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_00690 c748637ff46dc0634f7fb36b5890ee73 403 SUPERFAMILY SSF56601 11 292 6.08E-78 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_00690 c748637ff46dc0634f7fb36b5890ee73 403 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 39 272 3.0E-99 T 15-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 NJ56_00690 c748637ff46dc0634f7fb36b5890ee73 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 158 171 1.4E-16 T 15-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NJ56_00690 c748637ff46dc0634f7fb36b5890ee73 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 72 83 1.4E-16 T 15-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NJ56_00690 c748637ff46dc0634f7fb36b5890ee73 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 131 148 1.4E-16 T 15-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NJ56_00690 c748637ff46dc0634f7fb36b5890ee73 403 SUPERFAMILY SSF69189 292 385 2.16E-25 T 15-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_00690 c748637ff46dc0634f7fb36b5890ee73 403 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 292 383 3.7E-25 T 15-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_00690 c748637ff46dc0634f7fb36b5890ee73 403 Gene3D G3DSA:2.60.410.10 292 383 5.5E-28 T 15-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_07170 8ec1597bcbec2a5c70f6429061eee9d3 670 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 65 670 7.7E-244 T 15-10-2018 IPR010100 TonB-dependent copper receptor NJ56_07170 8ec1597bcbec2a5c70f6429061eee9d3 670 Gene3D G3DSA:2.40.170.20 175 670 2.0E-60 T 15-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NJ56_07170 8ec1597bcbec2a5c70f6429061eee9d3 670 Pfam PF07715 TonB-dependent Receptor Plug Domain 75 162 7.6E-14 T 15-10-2018 IPR012910 TonB-dependent receptor, plug domain NJ56_07170 8ec1597bcbec2a5c70f6429061eee9d3 670 Gene3D G3DSA:2.170.130.10 56 169 7.8E-14 T 15-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily NJ56_07170 8ec1597bcbec2a5c70f6429061eee9d3 670 Pfam PF00593 TonB dependent receptor 216 669 3.5E-38 T 15-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel NJ56_07170 8ec1597bcbec2a5c70f6429061eee9d3 670 SUPERFAMILY SSF56935 49 670 1.65E-86 T 15-10-2018 NJ56_13985 e8c28d3b3f9cefb8c0ce117ed5ef40a0 460 SMART SM00487 23 220 2.2E-56 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_13985 e8c28d3b3f9cefb8c0ce117ed5ef40a0 460 Pfam PF00270 DEAD/DEAH box helicase 28 193 1.7E-44 T 15-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NJ56_13985 e8c28d3b3f9cefb8c0ce117ed5ef40a0 460 SUPERFAMILY SSF52540 74 357 8.39E-71 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_13985 e8c28d3b3f9cefb8c0ce117ed5ef40a0 460 Pfam PF03880 DbpA RNA binding domain 387 457 1.3E-22 T 15-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain NJ56_13985 e8c28d3b3f9cefb8c0ce117ed5ef40a0 460 Gene3D G3DSA:3.40.50.300 4 210 3.8E-69 T 15-10-2018 NJ56_13985 e8c28d3b3f9cefb8c0ce117ed5ef40a0 460 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 6 460 71.616 T 15-10-2018 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 NJ56_13985 e8c28d3b3f9cefb8c0ce117ed5ef40a0 460 Gene3D G3DSA:3.30.70.330 388 459 3.4E-20 T 15-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily NJ56_13985 e8c28d3b3f9cefb8c0ce117ed5ef40a0 460 SMART SM00490 256 337 8.0E-30 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_13985 e8c28d3b3f9cefb8c0ce117ed5ef40a0 460 Pfam PF00271 Helicase conserved C-terminal domain 237 337 1.7E-27 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_13985 e8c28d3b3f9cefb8c0ce117ed5ef40a0 460 Gene3D G3DSA:3.40.50.300 216 387 9.7E-48 T 15-10-2018 NJ56_13985 e8c28d3b3f9cefb8c0ce117ed5ef40a0 460 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 15-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site NJ56_17160 d0d725f68299d93c485d5fdcc8b5c3fd 87 Pfam PF00462 Glutaredoxin 4 69 4.1E-17 T 15-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 NJ56_17160 d0d725f68299d93c485d5fdcc8b5c3fd 87 PRINTS PR00160 Glutaredoxin signature 52 65 3.7E-11 T 15-10-2018 IPR014025 Glutaredoxin subgroup NJ56_17160 d0d725f68299d93c485d5fdcc8b5c3fd 87 PRINTS PR00160 Glutaredoxin signature 66 79 3.7E-11 T 15-10-2018 IPR014025 Glutaredoxin subgroup NJ56_17160 d0d725f68299d93c485d5fdcc8b5c3fd 87 PRINTS PR00160 Glutaredoxin signature 3 21 3.7E-11 T 15-10-2018 IPR014025 Glutaredoxin subgroup NJ56_17160 d0d725f68299d93c485d5fdcc8b5c3fd 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 86 1.5E-48 T 15-10-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 NJ56_17160 d0d725f68299d93c485d5fdcc8b5c3fd 87 SUPERFAMILY SSF52833 4 81 6.43E-21 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_17160 d0d725f68299d93c485d5fdcc8b5c3fd 87 Gene3D G3DSA:3.40.30.10 3 85 4.6E-25 T 15-10-2018 NJ56_17160 d0d725f68299d93c485d5fdcc8b5c3fd 87 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 15-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 NJ56_17070 95ba4630e0dc9d45c3ad47596e2b78e5 338 Pfam PF01212 Beta-eliminating lyase 4 284 1.1E-95 T 15-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 NJ56_17070 95ba4630e0dc9d45c3ad47596e2b78e5 338 SUPERFAMILY SSF53383 3 335 7.61E-111 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_17070 95ba4630e0dc9d45c3ad47596e2b78e5 338 Gene3D G3DSA:3.90.1150.10 246 336 1.7E-26 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_17070 95ba4630e0dc9d45c3ad47596e2b78e5 338 PIRSF PIRSF017617 1 338 9.0E-128 T 15-10-2018 IPR023603 Threonine aldolase NJ56_17070 95ba4630e0dc9d45c3ad47596e2b78e5 338 Gene3D G3DSA:3.40.640.10 1 245 1.0E-96 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_02305 f1009b59464764da6a78e49a74b851ad 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 8 166 7.2E-41 T 15-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_02305 f1009b59464764da6a78e49a74b851ad 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 186 336 1.1E-19 T 15-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_02305 f1009b59464764da6a78e49a74b851ad 349 SUPERFAMILY SSF55120 3 339 6.47E-107 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_02305 f1009b59464764da6a78e49a74b851ad 349 Gene3D G3DSA:3.30.2350.20 16 336 6.4E-122 T 15-10-2018 NJ56_02305 f1009b59464764da6a78e49a74b851ad 349 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 4 340 7.9E-82 T 15-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_02305 f1009b59464764da6a78e49a74b851ad 349 Gene3D G3DSA:3.30.2340.10 166 300 6.4E-122 T 15-10-2018 NJ56_02305 f1009b59464764da6a78e49a74b851ad 349 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 4 341 28.593 T 15-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_02305 f1009b59464764da6a78e49a74b851ad 349 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 76 89 - T 15-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 2.3E-25 T 15-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 2.3E-25 T 15-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 2.3E-25 T 15-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 2.3E-25 T 15-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 2.8E-120 T 15-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 38.596 T 15-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 Gene3D G3DSA:3.40.50.1370 8 304 1.9E-123 T 15-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 Gene3D G3DSA:3.40.50.1370 135 292 1.9E-123 T 15-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 3.5E-28 T 15-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 15-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 SUPERFAMILY SSF53671 4 306 1.22E-100 T 15-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 3.6E-36 T 15-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 3.6E-36 T 15-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 3.6E-36 T 15-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 3.6E-36 T 15-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 3.6E-36 T 15-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 3.6E-36 T 15-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_08135 ae64601e78e841effa3857abd23f8d81 311 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 7.4E-47 T 15-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 NJ56_03745 09cf0746259bd48d56fd65f019fb1235 343 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 13 332 1.1E-137 T 15-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 NJ56_03745 09cf0746259bd48d56fd65f019fb1235 343 Pfam PF00296 Luciferase-like monooxygenase 29 243 2.8E-31 T 15-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 NJ56_03745 09cf0746259bd48d56fd65f019fb1235 343 SUPERFAMILY SSF51679 11 332 4.84E-82 T 15-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 NJ56_03745 09cf0746259bd48d56fd65f019fb1235 343 Gene3D G3DSA:3.20.20.30 7 335 2.9E-97 T 15-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 NJ56_15790 b53c93c1fe0063015f16aa8dd001beb5 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 4.3E-85 T 15-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 NJ56_15790 b53c93c1fe0063015f16aa8dd001beb5 213 Pfam PF01081 KDPG and KHG aldolase 9 203 5.8E-91 T 15-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 NJ56_15790 b53c93c1fe0063015f16aa8dd001beb5 213 Gene3D G3DSA:3.20.20.70 1 211 3.6E-73 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_15790 b53c93c1fe0063015f16aa8dd001beb5 213 SUPERFAMILY SSF51569 4 208 6.59E-69 T 15-10-2018 NJ56_15790 b53c93c1fe0063015f16aa8dd001beb5 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 15-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 NJ56_15790 b53c93c1fe0063015f16aa8dd001beb5 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 15-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 NJ56_16905 6c70f5611b6f544c9e5d1c0d3c74c96c 582 Gene3D G3DSA:3.40.50.300 333 582 3.2E-96 T 15-10-2018 NJ56_16905 6c70f5611b6f544c9e5d1c0d3c74c96c 582 SMART SM00382 368 555 5.5E-19 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_16905 6c70f5611b6f544c9e5d1c0d3c74c96c 582 SUPERFAMILY SSF90123 14 327 7.06E-75 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_16905 6c70f5611b6f544c9e5d1c0d3c74c96c 582 SUPERFAMILY SSF52540 331 580 4.22E-95 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16905 6c70f5611b6f544c9e5d1c0d3c74c96c 582 Gene3D G3DSA:1.20.1560.10 2 331 1.4E-80 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_16905 6c70f5611b6f544c9e5d1c0d3c74c96c 582 Pfam PF00664 ABC transporter transmembrane region 27 297 2.3E-59 T 15-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 NJ56_16905 6c70f5611b6f544c9e5d1c0d3c74c96c 582 Pfam PF00005 ABC transporter 361 509 5.9E-34 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_16905 6c70f5611b6f544c9e5d1c0d3c74c96c 582 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 12 581 3.2E-264 T 15-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 NJ56_16905 6c70f5611b6f544c9e5d1c0d3c74c96c 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_17715 54dd52f5e3c3cb089c83b28245b11a5a 527 Pfam PF06986 Type-1V conjugative transfer system mating pair stabilisation 223 482 3.7E-23 T 15-10-2018 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 Pfam PF00206 Lyase 12 342 9.1E-119 T 15-10-2018 IPR022761 Fumarate lyase, N-terminal NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 Gene3D G3DSA:1.10.275.10 5 138 1.2E-54 T 15-10-2018 IPR024083 Fumarase/histidase, N-terminal NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 Gene3D G3DSA:1.20.200.10 139 407 6.8E-121 T 15-10-2018 NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 Pfam PF10415 Fumarase C C-terminus 408 461 2.8E-26 T 15-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 15-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 90.726 T 15-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 Gene3D G3DSA:1.10.40.30 408 465 8.2E-31 T 15-10-2018 NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 5 461 3.8E-244 T 15-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 2.7E-33 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 2.7E-33 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 2.7E-33 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 2.7E-33 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 1.1E-5 T 15-10-2018 NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 1.1E-5 T 15-10-2018 NJ56_15090 52bb2b35b37eb6374cb28f4225d021dc 465 SUPERFAMILY SSF48557 5 459 2.04E-158 T 15-10-2018 IPR008948 L-Aspartase-like GO:0003824 NJ56_13900 6bc5f6530401b74be00aff85aab1bdd0 539 Pfam PF00732 GMC oxidoreductase 10 320 4.7E-63 T 15-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 NJ56_13900 6bc5f6530401b74be00aff85aab1bdd0 539 SUPERFAMILY SSF54373 360 478 2.75E-14 T 15-10-2018 NJ56_13900 6bc5f6530401b74be00aff85aab1bdd0 539 Gene3D G3DSA:3.50.50.60 10 532 2.8E-147 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_13900 6bc5f6530401b74be00aff85aab1bdd0 539 PIRSF PIRSF000137 357 538 8.9E-30 T 15-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 NJ56_13900 6bc5f6530401b74be00aff85aab1bdd0 539 PIRSF PIRSF000137 1 368 6.8E-76 T 15-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 NJ56_13900 6bc5f6530401b74be00aff85aab1bdd0 539 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 104 127 - T 15-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 NJ56_13900 6bc5f6530401b74be00aff85aab1bdd0 539 SUPERFAMILY SSF51905 9 537 3.45E-66 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_13900 6bc5f6530401b74be00aff85aab1bdd0 539 Gene3D G3DSA:3.30.410.40 172 472 2.8E-147 T 15-10-2018 NJ56_13900 6bc5f6530401b74be00aff85aab1bdd0 539 Pfam PF05199 GMC oxidoreductase 391 530 8.0E-28 T 15-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 NJ56_16125 80efc1cd7efdbb5e987feafa43e889e6 574 SUPERFAMILY SSF56762 199 543 2.35E-107 T 15-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16125 80efc1cd7efdbb5e987feafa43e889e6 574 SUPERFAMILY SSF143243 17 200 4.18E-43 T 15-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16125 80efc1cd7efdbb5e987feafa43e889e6 574 Gene3D G3DSA:1.10.645.20 187 543 3.4E-110 T 15-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16125 80efc1cd7efdbb5e987feafa43e889e6 574 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 94 139 7.0E-16 T 15-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16125 80efc1cd7efdbb5e987feafa43e889e6 574 Gene3D G3DSA:3.30.460.80 4 141 1.5E-9 T 15-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16125 80efc1cd7efdbb5e987feafa43e889e6 574 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 477 543 5.1E-10 T 15-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16125 80efc1cd7efdbb5e987feafa43e889e6 574 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 301 470 4.8E-35 T 15-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16125 80efc1cd7efdbb5e987feafa43e889e6 574 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 222 233 - T 15-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16125 80efc1cd7efdbb5e987feafa43e889e6 574 Pfam PF00374 Nickel-dependent hydrogenase 224 292 2.8E-13 T 15-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 NJ56_16125 80efc1cd7efdbb5e987feafa43e889e6 574 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 43 159 3.8E-22 T 15-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_12190 529765a60049daa0cd56d9e1a196c83a 597 Pfam PF00884 Sulfatase 262 511 2.0E-24 T 15-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 NJ56_12190 529765a60049daa0cd56d9e1a196c83a 597 SUPERFAMILY SSF53649 256 562 1.05E-48 T 15-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 NJ56_12190 529765a60049daa0cd56d9e1a196c83a 597 Pfam PF11893 Domain of unknown function (DUF3413) 6 251 6.3E-107 T 15-10-2018 IPR024588 Inner membrane protein YejM, N-terminal NJ56_12190 529765a60049daa0cd56d9e1a196c83a 597 Gene3D G3DSA:3.40.720.10 248 543 2.6E-39 T 15-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 NJ56_12190 529765a60049daa0cd56d9e1a196c83a 597 PIRSF PIRSF004950 6 597 6.4E-234 T 15-10-2018 IPR012159 Inner membrane protein YejM NJ56_00020 f9c89aa873913ffdf2afcf90c776c078 309 Gene3D G3DSA:3.20.20.70 1 242 1.4E-85 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_00020 f9c89aa873913ffdf2afcf90c776c078 309 Pfam PF01207 Dihydrouridine synthase (Dus) 5 295 1.7E-88 T 15-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 NJ56_00020 f9c89aa873913ffdf2afcf90c776c078 309 Gene3D G3DSA:1.20.225.30 243 309 1.9E-33 T 15-10-2018 NJ56_00020 f9c89aa873913ffdf2afcf90c776c078 309 SUPERFAMILY SSF51395 1 304 1.2E-70 T 15-10-2018 NJ56_00020 f9c89aa873913ffdf2afcf90c776c078 309 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 309 50.602 T 15-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 NJ56_00020 f9c89aa873913ffdf2afcf90c776c078 309 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 15-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 NJ56_00020 f9c89aa873913ffdf2afcf90c776c078 309 PIRSF PIRSF006621 1 309 4.6E-82 T 15-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 NJ56_04725 b88343930bdc502ee00ef7b98a329f71 217 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 5 210 19.947 T 15-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 NJ56_04725 b88343930bdc502ee00ef7b98a329f71 217 SUPERFAMILY SSF51391 5 210 4.32E-62 T 15-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 NJ56_04725 b88343930bdc502ee00ef7b98a329f71 217 Gene3D G3DSA:3.20.20.70 8 213 3.2E-59 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_04725 b88343930bdc502ee00ef7b98a329f71 217 Pfam PF02581 Thiamine monophosphate synthase 24 192 8.0E-54 T 15-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 NJ56_04725 b88343930bdc502ee00ef7b98a329f71 217 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 25 204 3.0E-54 T 15-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 NJ56_09745 50dbf292fff770e4c4174fabfb3a50ea 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 47 7.7E-7 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_09745 50dbf292fff770e4c4174fabfb3a50ea 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 1.2E-9 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_09745 50dbf292fff770e4c4174fabfb3a50ea 262 SUPERFAMILY SSF51161 2 262 7.53E-79 T 15-10-2018 IPR011004 Trimeric LpxA-like superfamily NJ56_09745 50dbf292fff770e4c4174fabfb3a50ea 262 Gene3D G3DSA:2.160.10.10 1 196 8.1E-55 T 15-10-2018 NJ56_09745 50dbf292fff770e4c4174fabfb3a50ea 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 153 181 - T 15-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 NJ56_09745 50dbf292fff770e4c4174fabfb3a50ea 262 PIRSF PIRSF000456 4 262 1.4E-107 T 15-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 NJ56_09745 50dbf292fff770e4c4174fabfb3a50ea 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 260 1.9E-110 T 15-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 NJ56_09745 50dbf292fff770e4c4174fabfb3a50ea 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 20 48 - T 15-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 NJ56_09745 50dbf292fff770e4c4174fabfb3a50ea 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 48.578 T 15-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 NJ56_09745 50dbf292fff770e4c4174fabfb3a50ea 262 Gene3D G3DSA:1.20.1180.10 197 262 7.2E-27 T 15-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 NJ56_09745 50dbf292fff770e4c4174fabfb3a50ea 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 1.3E-28 T 15-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 NJ56_12540 82c9ebaab37cdc919942b130e9b60632 915 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 271 472 1.2E-37 T 15-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 NJ56_12540 82c9ebaab37cdc919942b130e9b60632 915 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 3 81 5.4E-14 T 15-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB NJ56_12540 82c9ebaab37cdc919942b130e9b60632 915 SUPERFAMILY SSF52540 484 856 5.64E-33 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_12540 82c9ebaab37cdc919942b130e9b60632 915 Gene3D G3DSA:3.40.50.300 691 859 3.9E-17 T 15-10-2018 NJ56_11675 9d3d24426e16d049a5e25ebb9d2cc503 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 47 183 1.0E-68 T 15-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11675 9d3d24426e16d049a5e25ebb9d2cc503 225 Gene3D G3DSA:3.40.50.12280 26 193 5.0E-70 T 15-10-2018 NJ56_11675 9d3d24426e16d049a5e25ebb9d2cc503 225 SUPERFAMILY SSF56770 44 190 6.02E-64 T 15-10-2018 NJ56_11675 9d3d24426e16d049a5e25ebb9d2cc503 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 28 182 41.81 T 15-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11675 9d3d24426e16d049a5e25ebb9d2cc503 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 69 175 5.2E-22 T 15-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11675 9d3d24426e16d049a5e25ebb9d2cc503 225 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 149 165 - T 15-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_09845 413d97d0be49f0104a75448bf3614a2b 217 Gene3D G3DSA:1.10.3720.10 1 217 5.5E-62 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_09845 413d97d0be49f0104a75448bf3614a2b 217 SUPERFAMILY SSF161098 10 201 1.27E-48 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_09845 413d97d0be49f0104a75448bf3614a2b 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 212 2.6E-23 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_05945 7f2dae692fe94c692580f1ac863defde 323 Pfam PF03595 Voltage-dependent anion channel 19 307 5.3E-33 T 15-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 NJ56_05945 7f2dae692fe94c692580f1ac863defde 323 Gene3D G3DSA:1.50.10.150 6 314 4.0E-44 T 15-10-2018 IPR038665 Voltage-dependent anion channel superfamily NJ56_06735 eff59c17d5b4f4bdd27376c49129c7ec 376 PRINTS PR00735 Glycosyl hydrolase family 8 signature 53 66 4.3E-18 T 15-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 NJ56_06735 eff59c17d5b4f4bdd27376c49129c7ec 376 PRINTS PR00735 Glycosyl hydrolase family 8 signature 115 133 4.3E-18 T 15-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 NJ56_06735 eff59c17d5b4f4bdd27376c49129c7ec 376 PRINTS PR00735 Glycosyl hydrolase family 8 signature 339 353 4.3E-18 T 15-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 NJ56_06735 eff59c17d5b4f4bdd27376c49129c7ec 376 PRINTS PR00735 Glycosyl hydrolase family 8 signature 242 251 4.3E-18 T 15-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 NJ56_06735 eff59c17d5b4f4bdd27376c49129c7ec 376 PRINTS PR00735 Glycosyl hydrolase family 8 signature 180 197 4.3E-18 T 15-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 NJ56_06735 eff59c17d5b4f4bdd27376c49129c7ec 376 PRINTS PR00735 Glycosyl hydrolase family 8 signature 217 228 4.3E-18 T 15-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 NJ56_06735 eff59c17d5b4f4bdd27376c49129c7ec 376 Gene3D G3DSA:1.50.10.10 23 368 1.1E-135 T 15-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 NJ56_06735 eff59c17d5b4f4bdd27376c49129c7ec 376 SUPERFAMILY SSF48208 8 358 4.2E-101 T 15-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 NJ56_06735 eff59c17d5b4f4bdd27376c49129c7ec 376 Pfam PF01270 Glycosyl hydrolases family 8 9 353 4.3E-91 T 15-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 NJ56_00190 07e5ae168cf1cc2611f4a0909cd444de 352 SUPERFAMILY SSF54197 179 345 1.62E-52 T 15-10-2018 IPR036265 HIT-like superfamily NJ56_00190 07e5ae168cf1cc2611f4a0909cd444de 352 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 151 168 - T 15-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 NJ56_00190 07e5ae168cf1cc2611f4a0909cd444de 352 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 183 346 1.9E-65 T 15-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 NJ56_00190 07e5ae168cf1cc2611f4a0909cd444de 352 Gene3D G3DSA:3.30.428.10 176 350 4.9E-66 T 15-10-2018 IPR036265 HIT-like superfamily NJ56_00190 07e5ae168cf1cc2611f4a0909cd444de 352 Gene3D G3DSA:3.30.428.10 45 175 4.9E-55 T 15-10-2018 IPR036265 HIT-like superfamily NJ56_00190 07e5ae168cf1cc2611f4a0909cd444de 352 SUPERFAMILY SSF54197 4 177 6.58E-70 T 15-10-2018 IPR036265 HIT-like superfamily NJ56_00190 07e5ae168cf1cc2611f4a0909cd444de 352 PIRSF PIRSF000808 1 341 3.9E-116 T 15-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 NJ56_00190 07e5ae168cf1cc2611f4a0909cd444de 352 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 5 176 2.6E-66 T 15-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 NJ56_00190 07e5ae168cf1cc2611f4a0909cd444de 352 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 2 347 5.8E-195 T 15-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 NJ56_05675 3b188eda154b13f3ef4df1f728a5e845 386 SUPERFAMILY SSF53383 5 381 3.67E-123 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_05675 3b188eda154b13f3ef4df1f728a5e845 386 PIRSF PIRSF001434 1 384 2.5E-137 T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_05675 3b188eda154b13f3ef4df1f728a5e845 386 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 190 204 - T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_05675 3b188eda154b13f3ef4df1f728a5e845 386 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 3 382 8.0E-208 T 15-10-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 NJ56_05675 3b188eda154b13f3ef4df1f728a5e845 386 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 380 1.9E-144 T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_05675 3b188eda154b13f3ef4df1f728a5e845 386 Gene3D G3DSA:3.90.1150.10 248 385 1.1E-54 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_05675 3b188eda154b13f3ef4df1f728a5e845 386 Gene3D G3DSA:3.40.640.10 1 247 7.2E-90 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_07035 9676db98b68387860636506070d299a0 451 SUPERFAMILY SSF55874 292 442 4.58E-33 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_07035 9676db98b68387860636506070d299a0 451 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 289 4.9E-10 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_07035 9676db98b68387860636506070d299a0 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 8.1E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_07035 9676db98b68387860636506070d299a0 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 8.1E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_07035 9676db98b68387860636506070d299a0 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 8.1E-13 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_07035 9676db98b68387860636506070d299a0 451 SMART SM00388 233 293 1.1E-11 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_07035 9676db98b68387860636506070d299a0 451 SUPERFAMILY SSF47384 217 291 5.3E-11 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_07035 9676db98b68387860636506070d299a0 451 Gene3D G3DSA:1.10.287.130 178 288 2.0E-22 T 15-10-2018 NJ56_07035 9676db98b68387860636506070d299a0 451 Gene3D G3DSA:3.30.565.10 294 446 8.4E-39 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_07035 9676db98b68387860636506070d299a0 451 Pfam PF00672 HAMP domain 182 225 7.0E-9 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_07035 9676db98b68387860636506070d299a0 451 SMART SM00304 180 232 8.6E-7 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_07035 9676db98b68387860636506070d299a0 451 SMART SM00387 332 440 1.1E-28 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_07035 9676db98b68387860636506070d299a0 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 439 4.0E-19 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_10340 797d3f1127c42890939b0626cda60822 318 Gene3D G3DSA:3.30.200.100 218 318 6.9E-28 T 15-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily NJ56_10340 797d3f1127c42890939b0626cda60822 318 Pfam PF17188 MucB/RseB C-terminal domain 218 312 8.1E-26 T 15-10-2018 IPR033436 MucB/RseB, C-terminal NJ56_10340 797d3f1127c42890939b0626cda60822 318 PIRSF PIRSF005427 2 318 7.3E-85 T 15-10-2018 IPR005588 MucB/RseB NJ56_10340 797d3f1127c42890939b0626cda60822 318 Gene3D G3DSA:2.50.20.10 26 209 8.5E-54 T 15-10-2018 NJ56_10340 797d3f1127c42890939b0626cda60822 318 Pfam PF03888 MucB/RseB N-terminal domain 27 195 9.3E-61 T 15-10-2018 IPR033434 MucB/RseB, N-terminal NJ56_04325 13007cce70688bf034bcce04f9075503 398 Gene3D G3DSA:3.40.50.720 33 283 8.8E-75 T 15-10-2018 NJ56_04325 13007cce70688bf034bcce04f9075503 398 SUPERFAMILY SSF69572 29 359 1.44E-80 T 15-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 NJ56_04325 13007cce70688bf034bcce04f9075503 398 Pfam PF00899 ThiF family 43 272 3.5E-56 T 15-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 NJ56_04325 13007cce70688bf034bcce04f9075503 398 Pfam PF00581 Rhodanese-like domain 301 380 4.2E-9 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_04325 13007cce70688bf034bcce04f9075503 398 SMART SM00450 293 387 6.7E-13 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_04325 13007cce70688bf034bcce04f9075503 398 Gene3D G3DSA:3.40.250.10 290 382 3.7E-20 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_10710 a94eda28520a0e7ef1acad437230140a 300 Pfam PF00781 Diacylglycerol kinase catalytic domain 8 130 3.8E-27 T 15-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 NJ56_10710 a94eda28520a0e7ef1acad437230140a 300 Gene3D G3DSA:3.40.50.10330 25 288 1.5E-88 T 15-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 NJ56_10710 a94eda28520a0e7ef1acad437230140a 300 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 7 299 2.9E-140 T 15-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 NJ56_10710 a94eda28520a0e7ef1acad437230140a 300 SMART SM00046 6 135 5.6E-18 T 15-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 NJ56_10710 a94eda28520a0e7ef1acad437230140a 300 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 6 300 45.212 T 15-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 NJ56_10710 a94eda28520a0e7ef1acad437230140a 300 Gene3D G3DSA:2.60.200.40 127 285 1.5E-88 T 15-10-2018 NJ56_10710 a94eda28520a0e7ef1acad437230140a 300 SUPERFAMILY SSF111331 8 296 3.71E-67 T 15-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily NJ56_10710 a94eda28520a0e7ef1acad437230140a 300 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 1 294 6.8E-92 T 15-10-2018 IPR005218 Diacylglycerol/lipid kinase NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 SUPERFAMILY SSF53633 1 296 9.43E-74 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 SUPERFAMILY SSF55347 614 797 1.63E-52 T 15-10-2018 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 SUPERFAMILY SSF55021 383 475 1.53E-21 T 15-10-2018 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 15-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 Pfam PF00696 Amino acid kinase family 2 284 1.2E-46 T 15-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 PIRSF PIRSF000727 1 817 0.0 T 15-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 Gene3D G3DSA:3.40.50.720 466 811 6.3E-121 T 15-10-2018 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 Gene3D G3DSA:3.40.1160.10 1 297 6.3E-85 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 3.3E-142 T 15-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 605 6.9E-29 T 15-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 SUPERFAMILY SSF51735 464 636 2.22E-40 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 15-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 Pfam PF00742 Homoserine dehydrogenase 614 810 3.2E-49 T 15-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 SUPERFAMILY SSF55021 304 381 1.18E-22 T 15-10-2018 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 Pfam PF01842 ACT domain 324 374 7.4E-8 T 15-10-2018 IPR002912 ACT domain NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 Gene3D G3DSA:3.30.2130.10 302 464 2.3E-47 T 15-10-2018 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 Gene3D G3DSA:3.30.360.10 625 795 6.3E-121 T 15-10-2018 NJ56_03045 aeae13b29014d7be48c468c867b4c59d 819 Pfam PF13840 ACT domain 394 453 5.8E-8 T 15-10-2018 IPR027795 CASTOR, ACT domain NJ56_03900 a76a19ae98e2d83a27dd19f46174f17a 312 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 4.5E-46 T 15-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 NJ56_03900 a76a19ae98e2d83a27dd19f46174f17a 312 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 146 158 - T 15-10-2018 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263 NJ56_03900 a76a19ae98e2d83a27dd19f46174f17a 312 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 59.324 T 15-10-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 NJ56_03900 a76a19ae98e2d83a27dd19f46174f17a 312 SUPERFAMILY SSF51735 1 145 3.55E-39 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_03900 a76a19ae98e2d83a27dd19f46174f17a 312 Gene3D G3DSA:3.90.110.10 147 312 1.2E-53 T 15-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 NJ56_03900 a76a19ae98e2d83a27dd19f46174f17a 312 PIRSF PIRSF000102 1 310 1.9E-59 T 15-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 NJ56_03900 a76a19ae98e2d83a27dd19f46174f17a 312 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 310 3.2E-50 T 15-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 NJ56_03900 a76a19ae98e2d83a27dd19f46174f17a 312 SUPERFAMILY SSF56327 146 311 2.47E-41 T 15-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 NJ56_03900 a76a19ae98e2d83a27dd19f46174f17a 312 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 7.0E-136 T 15-10-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 NJ56_03900 a76a19ae98e2d83a27dd19f46174f17a 312 Gene3D G3DSA:3.40.50.720 1 146 1.8E-64 T 15-10-2018 NJ56_08015 e06a6c6a08ebb43b3ad1d2531aa916be 197 Hamap MF_00528 Septum formation protein Maf [maf]. 3 189 30.988 T 15-10-2018 IPR003697 Maf-like protein GO:0047429 NJ56_08015 e06a6c6a08ebb43b3ad1d2531aa916be 197 Pfam PF02545 Maf-like protein 4 184 1.1E-57 T 15-10-2018 IPR003697 Maf-like protein GO:0047429 NJ56_08015 e06a6c6a08ebb43b3ad1d2531aa916be 197 Gene3D G3DSA:3.90.950.10 2 190 1.1E-72 T 15-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like NJ56_08015 e06a6c6a08ebb43b3ad1d2531aa916be 197 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 182 1.3E-61 T 15-10-2018 IPR003697 Maf-like protein GO:0047429 NJ56_08015 e06a6c6a08ebb43b3ad1d2531aa916be 197 PIRSF PIRSF006305 1 190 5.2E-50 T 15-10-2018 IPR003697 Maf-like protein GO:0047429 NJ56_08015 e06a6c6a08ebb43b3ad1d2531aa916be 197 SUPERFAMILY SSF52972 2 184 3.66E-60 T 15-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like NJ56_05105 030f9d393a00cb7350f0070c73720305 222 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_05105 030f9d393a00cb7350f0070c73720305 222 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 1.5E-93 T 15-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 NJ56_05105 030f9d393a00cb7350f0070c73720305 222 Pfam PF00005 ABC transporter 18 165 7.1E-36 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_05105 030f9d393a00cb7350f0070c73720305 222 SUPERFAMILY SSF52540 1 216 3.02E-65 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05105 030f9d393a00cb7350f0070c73720305 222 SMART SM00382 27 214 2.8E-10 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_05105 030f9d393a00cb7350f0070c73720305 222 Gene3D G3DSA:3.40.50.300 1 221 3.3E-62 T 15-10-2018 NJ56_01450 d6566f81bc87fafcff6c5e7d21420662 304 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 291 3.8E-80 T 15-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 NJ56_01450 d6566f81bc87fafcff6c5e7d21420662 304 Gene3D G3DSA:1.10.1040.10 168 290 3.5E-45 T 15-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NJ56_01450 d6566f81bc87fafcff6c5e7d21420662 304 SUPERFAMILY SSF48179 168 289 5.44E-35 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_01450 d6566f81bc87fafcff6c5e7d21420662 304 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 169 289 6.5E-34 T 15-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain NJ56_01450 d6566f81bc87fafcff6c5e7d21420662 304 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 142 2.8E-25 T 15-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain NJ56_01450 d6566f81bc87fafcff6c5e7d21420662 304 Gene3D G3DSA:3.40.50.720 1 167 2.8E-56 T 15-10-2018 NJ56_01450 d6566f81bc87fafcff6c5e7d21420662 304 SUPERFAMILY SSF51735 1 167 6.04E-61 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_13670 9483e810e47b1dfd03a514d8de33b3f5 155 Gene3D G3DSA:3.10.450.160 56 155 2.3E-40 T 15-10-2018 NJ56_09260 41d045a85411ddb2a1b960757473b465 437 SMART SM01011 1 136 1.4E-57 T 15-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 NJ56_09260 41d045a85411ddb2a1b960757473b465 437 Gene3D G3DSA:3.40.350.10 1 171 2.5E-63 T 15-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal NJ56_09260 41d045a85411ddb2a1b960757473b465 437 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 125 1.1E-35 T 15-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 NJ56_09260 41d045a85411ddb2a1b960757473b465 437 SUPERFAMILY SSF53092 1 174 2.59E-53 T 15-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal NJ56_09260 41d045a85411ddb2a1b960757473b465 437 Gene3D G3DSA:3.90.230.10 172 437 8.2E-105 T 15-10-2018 NJ56_09260 41d045a85411ddb2a1b960757473b465 437 Pfam PF00557 Metallopeptidase family M24 180 412 4.1E-65 T 15-10-2018 IPR000994 Peptidase M24 NJ56_09260 41d045a85411ddb2a1b960757473b465 437 PRINTS PR00599 Methionine aminopeptidase-1 signature 371 383 4.5E-6 T 15-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 NJ56_09260 41d045a85411ddb2a1b960757473b465 437 PRINTS PR00599 Methionine aminopeptidase-1 signature 253 269 4.5E-6 T 15-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 NJ56_09260 41d045a85411ddb2a1b960757473b465 437 SUPERFAMILY SSF55920 175 434 5.5E-86 T 15-10-2018 IPR036005 Creatinase/aminopeptidase-like NJ56_09260 41d045a85411ddb2a1b960757473b465 437 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 348 360 - T 15-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 SMART SM00448 4 120 8.5E-15 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 Gene3D G3DSA:1.10.10.10 124 215 1.0E-23 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.4E-17 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 Gene3D G3DSA:3.40.50.2300 1 123 4.5E-20 T 15-10-2018 NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 Hamap MF_00981 Transcriptional regulatory protein RcsB [rcsB]. 1 214 52.241 T 15-10-2018 IPR030864 Transcriptional regulatory protein RcsB GO:0000160|GO:0006355 NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 SUPERFAMILY SSF52172 3 136 1.71E-22 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 SUPERFAMILY SSF46894 144 207 1.6E-16 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 SMART SM00421 148 205 2.3E-14 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 8.0E-8 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 8.0E-8 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 8.0E-8 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_11850 13a39d8434039527221f01dd8961cfcd 216 Pfam PF00072 Response regulator receiver domain 6 120 5.4E-24 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_04765 1275b195d4c00f0c822a86da3bd18e08 167 Gene3D G3DSA:3.30.70.1730 1 126 6.0E-36 T 15-10-2018 NJ56_04765 1275b195d4c00f0c822a86da3bd18e08 167 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 26.7 T 15-10-2018 IPR022973 Ribosomal protein L10 NJ56_04765 1275b195d4c00f0c822a86da3bd18e08 167 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 15-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_04765 1275b195d4c00f0c822a86da3bd18e08 167 SUPERFAMILY SSF160369 4 162 1.7E-48 T 15-10-2018 NJ56_04765 1275b195d4c00f0c822a86da3bd18e08 167 Pfam PF00466 Ribosomal protein L10 6 101 4.0E-27 T 15-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 NJ56_04765 1275b195d4c00f0c822a86da3bd18e08 167 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 78 157 4.0E-4 T 15-10-2018 NJ56_09410 4c8b3a5b8dac1ee85223327d804e9ec9 206 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 7 201 1.6E-39 T 15-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 NJ56_09410 4c8b3a5b8dac1ee85223327d804e9ec9 206 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 29 5.5E-7 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_09410 4c8b3a5b8dac1ee85223327d804e9ec9 206 SUPERFAMILY SSF54523 47 202 2.3E-32 T 15-10-2018 NJ56_09410 4c8b3a5b8dac1ee85223327d804e9ec9 206 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 29 1.3E-6 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_09410 4c8b3a5b8dac1ee85223327d804e9ec9 206 Gene3D G3DSA:3.10.610.10 39 141 4.3E-16 T 15-10-2018 NJ56_09410 4c8b3a5b8dac1ee85223327d804e9ec9 206 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_09410 4c8b3a5b8dac1ee85223327d804e9ec9 206 Pfam PF11612 Type II secretion system (T2SS), protein J 59 199 3.7E-19 T 15-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 Gene3D G3DSA:1.10.601.10 113 448 1.0E-146 T 15-10-2018 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 Pfam PF04545 Sigma-70, region 4 547 600 1.0E-18 T 15-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 Pfam PF04542 Sigma-70 region 2 379 448 1.7E-21 T 15-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 375 611 7.8E-121 T 15-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 PRINTS PR00046 Major sigma-70 factor signature 427 435 6.3E-31 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 PRINTS PR00046 Major sigma-70 factor signature 572 587 6.3E-31 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 PRINTS PR00046 Major sigma-70 factor signature 551 563 6.3E-31 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 PRINTS PR00046 Major sigma-70 factor signature 587 598 6.3E-31 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 PRINTS PR00046 Major sigma-70 factor signature 403 416 6.3E-31 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 SUPERFAMILY SSF88946 115 446 3.27E-101 T 15-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 375 600 3.5E-38 T 15-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 Pfam PF03979 Sigma-70 factor, region 1.1 4 80 2.2E-30 T 15-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 1.8E-12 T 15-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 4 612 46.623 T 15-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 Pfam PF04546 Sigma-70, non-essential region 139 348 2.4E-73 T 15-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 Gene3D G3DSA:1.10.10.10 452 528 5.5E-33 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 572 598 - T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 Pfam PF04539 Sigma-70 region 3 458 533 3.5E-29 T 15-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 Gene3D G3DSA:1.10.10.10 529 613 1.8E-37 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 403 416 - T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 SUPERFAMILY SSF88659 509 611 2.32E-25 T 15-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 SUPERFAMILY SSF88659 452 525 1.54E-20 T 15-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like NJ56_08630 f67c1d307d6d9670b405a5bb58a90480 613 Gene3D G3DSA:1.10.220.120 1 64 5.3E-31 T 15-10-2018 NJ56_03935 dafb00b7f88af5dc00080a74d3ad3515 578 Gene3D G3DSA:3.10.20.310 190 266 7.3E-24 T 15-10-2018 NJ56_03935 dafb00b7f88af5dc00080a74d3ad3515 578 Gene3D G3DSA:3.10.20.310 102 189 2.4E-29 T 15-10-2018 NJ56_03935 dafb00b7f88af5dc00080a74d3ad3515 578 Gene3D G3DSA:3.10.20.310 21 101 3.4E-30 T 15-10-2018 NJ56_03935 dafb00b7f88af5dc00080a74d3ad3515 578 Gene3D G3DSA:2.40.160.50 267 578 2.1E-124 T 15-10-2018 NJ56_03935 dafb00b7f88af5dc00080a74d3ad3515 578 Pfam PF01103 Surface antigen 295 575 1.7E-31 T 15-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 NJ56_03935 dafb00b7f88af5dc00080a74d3ad3515 578 Pfam PF17243 POTRA domain TamA domain 1 26 99 2.8E-20 T 15-10-2018 IPR035243 TamA, POTRA domain 1 NJ56_03935 dafb00b7f88af5dc00080a74d3ad3515 578 Pfam PF07244 Surface antigen variable number repeat 190 250 9.0E-6 T 15-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 NJ56_06465 a46b7d831dabb4496dea978d3c5645c9 190 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 4 183 1.1E-84 T 15-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 NJ56_06465 a46b7d831dabb4496dea978d3c5645c9 190 Pfam PF03352 Methyladenine glycosylase 8 184 5.3E-81 T 15-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 NJ56_06465 a46b7d831dabb4496dea978d3c5645c9 190 SUPERFAMILY SSF48150 4 188 3.22E-82 T 15-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 NJ56_06465 a46b7d831dabb4496dea978d3c5645c9 190 Gene3D G3DSA:1.10.340.30 3 189 6.3E-87 T 15-10-2018 NJ56_01690 dc0d1bbac7915996c5891c924ba1d963 133 Pfam PF07417 Transcriptional regulator Crl 5 122 1.5E-54 T 15-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 NJ56_01690 dc0d1bbac7915996c5891c924ba1d963 133 Gene3D G3DSA:3.30.310.230 1 133 9.8E-58 T 15-10-2018 IPR038208 Sigma factor-binding protein Crl superfamily GO:0045893 NJ56_01690 dc0d1bbac7915996c5891c924ba1d963 133 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 3 128 32.614 T 15-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 NJ56_09000 18e9a05bb954fa228c5c16b1d08af391 257 SMART SM00420 6 58 6.0E-19 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_09000 18e9a05bb954fa228c5c16b1d08af391 257 Pfam PF00455 DeoR C terminal sensor domain 74 232 2.6E-52 T 15-10-2018 IPR014036 DeoR C-terminal sensor domain NJ56_09000 18e9a05bb954fa228c5c16b1d08af391 257 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.1E-17 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_09000 18e9a05bb954fa228c5c16b1d08af391 257 Gene3D G3DSA:1.10.10.10 1 58 1.3E-5 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_09000 18e9a05bb954fa228c5c16b1d08af391 257 SUPERFAMILY SSF100950 73 233 2.51E-37 T 15-10-2018 IPR037171 NagB/RpiA transferase-like NJ56_09000 18e9a05bb954fa228c5c16b1d08af391 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 15-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 NJ56_09000 18e9a05bb954fa228c5c16b1d08af391 257 SUPERFAMILY SSF46785 4 60 1.88E-10 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_09000 18e9a05bb954fa228c5c16b1d08af391 257 SMART SM01134 72 233 2.5E-72 T 15-10-2018 NJ56_02465 43e1d03a192be931c27353141cf38610 813 Pfam PF08482 ATP-dependent helicase C-terminal 667 799 2.3E-53 T 15-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal NJ56_02465 43e1d03a192be931c27353141cf38610 813 Gene3D G3DSA:1.20.120.1080 372 481 4.1E-11 T 15-10-2018 NJ56_02465 43e1d03a192be931c27353141cf38610 813 SMART SM00490 226 328 7.0E-17 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_02465 43e1d03a192be931c27353141cf38610 813 Pfam PF00270 DEAD/DEAH box helicase 19 162 1.3E-9 T 15-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NJ56_02465 43e1d03a192be931c27353141cf38610 813 SMART SM00487 2 186 4.4E-16 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_02465 43e1d03a192be931c27353141cf38610 813 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 4 811 0.0 T 15-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 NJ56_02465 43e1d03a192be931c27353141cf38610 813 Gene3D G3DSA:3.40.50.300 180 346 1.5E-48 T 15-10-2018 NJ56_02465 43e1d03a192be931c27353141cf38610 813 PIRSF PIRSF005496 1 813 0.0 T 15-10-2018 NJ56_02465 43e1d03a192be931c27353141cf38610 813 Pfam PF04408 Helicase associated domain (HA2) 389 475 5.3E-14 T 15-10-2018 IPR007502 Helicase-associated domain GO:0004386 NJ56_02465 43e1d03a192be931c27353141cf38610 813 Gene3D G3DSA:3.40.50.300 1 179 2.4E-53 T 15-10-2018 NJ56_02465 43e1d03a192be931c27353141cf38610 813 Pfam PF00271 Helicase conserved C-terminal domain 205 327 3.2E-13 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_02465 43e1d03a192be931c27353141cf38610 813 SMART SM00847 388 479 3.5E-16 T 15-10-2018 IPR007502 Helicase-associated domain GO:0004386 NJ56_02465 43e1d03a192be931c27353141cf38610 813 SUPERFAMILY SSF52540 17 339 7.1E-51 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05390 bea8532ae82f464d1ac116f12336cf61 352 Pfam PF02706 Chain length determinant protein 16 95 4.8E-13 T 15-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 NJ56_05390 bea8532ae82f464d1ac116f12336cf61 352 Hamap MF_02025 ECA polysaccharide chain length modulation protein [wzzE]. 9 349 57.766 T 15-10-2018 IPR032895 ECA polysaccharide chain length modulation protein WzzE GO:0009246|GO:0016021 NJ56_05390 bea8532ae82f464d1ac116f12336cf61 352 SUPERFAMILY SSF160355 55 320 6.02E-83 T 15-10-2018 NJ56_04540 3929ceb89a1107f6f4236d57bfc0f4b7 697 Pfam PF12696 TraM recognition site of TraD and TraG 500 628 5.1E-12 T 15-10-2018 IPR032689 TraD/TraG, TraM recognition site NJ56_04540 3929ceb89a1107f6f4236d57bfc0f4b7 697 Gene3D G3DSA:3.40.50.300 155 247 3.4E-10 T 15-10-2018 NJ56_04540 3929ceb89a1107f6f4236d57bfc0f4b7 697 Gene3D G3DSA:3.40.50.300 418 653 1.9E-27 T 15-10-2018 NJ56_04540 3929ceb89a1107f6f4236d57bfc0f4b7 697 SUPERFAMILY SSF52540 148 646 2.88E-54 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04540 3929ceb89a1107f6f4236d57bfc0f4b7 697 TIGRFAM TIGR03754 conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class 7 648 0.0 T 15-10-2018 IPR022503 Conjugative coupling factor TraG/TraD, PFGI-1 NJ56_04540 3929ceb89a1107f6f4236d57bfc0f4b7 697 TIGRFAM TIGR03743 SXT_TraD: conjugative coupling factor TraD, SXT/TOL subfamily 7 649 6.2E-263 T 15-10-2018 IPR022458 Conjugative coupling factor TraG/TraD NJ56_11005 e0404b71f3e542ec1bc7fce30b5533d5 152 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 31.62 T 15-10-2018 IPR003791 Protein of unknown function UPF0178 NJ56_11005 e0404b71f3e542ec1bc7fce30b5533d5 152 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 145 9.0E-49 T 15-10-2018 IPR003791 Protein of unknown function UPF0178 NJ56_08035 603d724c36520a4d8e243c2eaa2ae7d1 481 Gene3D G3DSA:3.30.2290.10 8 238 1.1E-18 T 15-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal NJ56_08035 603d724c36520a4d8e243c2eaa2ae7d1 481 SUPERFAMILY SSF111283 19 480 3.92E-131 T 15-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 NJ56_08035 603d724c36520a4d8e243c2eaa2ae7d1 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 4.1E-68 T 15-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 NJ56_08035 603d724c36520a4d8e243c2eaa2ae7d1 481 PIRSF PIRSF004919 14 481 1.4E-145 T 15-10-2018 IPR025502 TldD NJ56_14675 d3a7bf3fe0e00dc3822c306a95125bf7 330 SMART SM00382 32 235 5.5E-7 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_14675 d3a7bf3fe0e00dc3822c306a95125bf7 330 Gene3D G3DSA:3.40.50.300 2 329 3.5E-77 T 15-10-2018 NJ56_14675 d3a7bf3fe0e00dc3822c306a95125bf7 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 8.3E-16 T 15-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 NJ56_14675 d3a7bf3fe0e00dc3822c306a95125bf7 330 Pfam PF00005 ABC transporter 24 187 1.6E-28 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_14675 d3a7bf3fe0e00dc3822c306a95125bf7 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 5.4E-21 T 15-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 NJ56_14675 d3a7bf3fe0e00dc3822c306a95125bf7 330 SUPERFAMILY SSF52540 3 266 1.7E-52 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_08810 d02dd19eed1452bde601afa4a9c74430 347 Pfam PF01618 MotA/TolQ/ExbB proton channel family 200 309 6.1E-35 T 15-10-2018 IPR002898 MotA/TolQ/ExbB proton channel NJ56_08810 d02dd19eed1452bde601afa4a9c74430 347 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 114 325 1.9E-94 T 15-10-2018 IPR014164 TonB-system energizer ExbB type-1 GO:0016020|GO:0022857|GO:0055085 NJ56_03620 b5fac7853bb0bfafbc51f1a56a9bb51c 167 SUPERFAMILY SSF55729 9 166 7.89E-31 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_03620 b5fac7853bb0bfafbc51f1a56a9bb51c 167 Gene3D G3DSA:3.40.630.30 14 151 3.6E-26 T 15-10-2018 NJ56_03620 b5fac7853bb0bfafbc51f1a56a9bb51c 167 Pfam PF00583 Acetyltransferase (GNAT) family 44 144 2.7E-15 T 15-10-2018 IPR000182 GNAT domain NJ56_14415 4aa4655813158bf8385d629c6935386b 273 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 2 272 73.522 T 15-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein NJ56_14415 4aa4655813158bf8385d629c6935386b 273 SUPERFAMILY SSF47454 173 230 6.28E-5 T 15-10-2018 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily GO:0003677|GO:0006355 NJ56_14415 4aa4655813158bf8385d629c6935386b 273 Pfam PF03618 Kinase/pyrophosphorylase 5 263 1.5E-73 T 15-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 NJ56_10395 1b8ee50cb14dd74c81b48d85ab6851b2 295 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 185 202 - T 15-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 NJ56_10395 1b8ee50cb14dd74c81b48d85ab6851b2 295 Gene3D G3DSA:1.10.8.1080 219 295 1.8E-28 T 15-10-2018 NJ56_10395 1b8ee50cb14dd74c81b48d85ab6851b2 295 Pfam PF01380 SIS domain 128 208 2.1E-10 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_10395 1b8ee50cb14dd74c81b48d85ab6851b2 295 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 2 295 43.535 T 15-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 NJ56_10395 1b8ee50cb14dd74c81b48d85ab6851b2 295 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 6 295 1.7E-128 T 15-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 NJ56_10395 1b8ee50cb14dd74c81b48d85ab6851b2 295 Gene3D G3DSA:3.40.50.10490 1 218 1.6E-85 T 15-10-2018 NJ56_10395 1b8ee50cb14dd74c81b48d85ab6851b2 295 SUPERFAMILY SSF53697 4 247 6.27E-76 T 15-10-2018 NJ56_01625 923364f87f0b78da8d785881005f703d 225 ProDom PD037589 AROM ARO OPERON REGULATED BY AROR BIOSYNTHESIS TRANSCRIPTION AMINO AROMATIC 5 223 8.0E-37 T 15-10-2018 IPR010843 Uncharacterised protein family AroM NJ56_01625 923364f87f0b78da8d785881005f703d 225 Pfam PF07302 AroM protein 6 224 2.2E-67 T 15-10-2018 IPR010843 Uncharacterised protein family AroM NJ56_06375 c616bd154427b563d2b4a3db7dbbdf64 119 SUPERFAMILY SSF54211 5 114 6.57E-32 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_06375 c616bd154427b563d2b4a3db7dbbdf64 119 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 115 17.574 T 15-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 NJ56_06375 c616bd154427b563d2b4a3db7dbbdf64 119 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 114 5.4E-36 T 15-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 NJ56_06375 c616bd154427b563d2b4a3db7dbbdf64 119 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 56 70 - T 15-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 NJ56_06375 c616bd154427b563d2b4a3db7dbbdf64 119 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 98 9.0E-42 T 15-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 NJ56_06375 c616bd154427b563d2b4a3db7dbbdf64 119 Pfam PF00825 Ribonuclease P 6 111 2.9E-32 T 15-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 NJ56_06375 c616bd154427b563d2b4a3db7dbbdf64 119 Gene3D G3DSA:3.30.230.10 1 119 7.0E-45 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_05830 e8b69e41f835ea93e5a4f8e7e1df0c61 144 SUPERFAMILY SSF52821 16 143 3.4E-29 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_05830 e8b69e41f835ea93e5a4f8e7e1df0c61 144 Pfam PF00581 Rhodanese-like domain 44 134 7.2E-15 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_05830 e8b69e41f835ea93e5a4f8e7e1df0c61 144 Gene3D G3DSA:3.40.250.10 38 144 1.7E-23 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_05830 e8b69e41f835ea93e5a4f8e7e1df0c61 144 SMART SM00450 41 139 1.4E-18 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_00975 ab0d67f811133b0e3219b585e377f791 849 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 315 325 - T 15-10-2018 IPR018030 Fimbrial membrane usher, conserved site NJ56_00975 ab0d67f811133b0e3219b585e377f791 849 Pfam PF13954 PapC N-terminal domain 37 181 1.5E-39 T 15-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 NJ56_00975 ab0d67f811133b0e3219b585e377f791 849 Gene3D G3DSA:2.60.40.2610 662 754 1.2E-13 T 15-10-2018 NJ56_00975 ab0d67f811133b0e3219b585e377f791 849 Pfam PF13953 PapC C-terminal domain 761 816 3.7E-13 T 15-10-2018 IPR025949 PapC-like, C-terminal domain NJ56_00975 ab0d67f811133b0e3219b585e377f791 849 Gene3D G3DSA:2.60.40.3110 273 361 2.7E-28 T 15-10-2018 NJ56_00975 ab0d67f811133b0e3219b585e377f791 849 SUPERFAMILY SSF141729 36 157 6.28E-34 T 15-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 NJ56_00975 ab0d67f811133b0e3219b585e377f791 849 Gene3D G3DSA:2.60.40.2070 758 835 1.5E-29 T 15-10-2018 NJ56_00975 ab0d67f811133b0e3219b585e377f791 849 Gene3D G3DSA:3.10.20.410 35 158 2.3E-24 T 15-10-2018 NJ56_00975 ab0d67f811133b0e3219b585e377f791 849 Pfam PF00577 Outer membrane usher protein 199 749 3.2E-183 T 15-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 NJ56_03365 60ef496ba6ae110376ea9a4ced6206e1 728 SUPERFAMILY SSF103515 419 728 8.89E-39 T 15-10-2018 IPR036709 Autotransporter beta-domain superfamily NJ56_03365 60ef496ba6ae110376ea9a4ced6206e1 728 SMART SM00869 447 718 5.9E-36 T 15-10-2018 IPR005546 Autotransporter beta-domain NJ56_03365 60ef496ba6ae110376ea9a4ced6206e1 728 Gene3D G3DSA:2.40.128.130 420 728 1.1E-48 T 15-10-2018 IPR036709 Autotransporter beta-domain superfamily NJ56_03365 60ef496ba6ae110376ea9a4ced6206e1 728 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 370 713 1.7E-9 T 15-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 NJ56_03365 60ef496ba6ae110376ea9a4ced6206e1 728 Pfam PF03797 Autotransporter beta-domain 450 708 2.2E-43 T 15-10-2018 IPR005546 Autotransporter beta-domain NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 Pfam PF01467 Cytidylyltransferase-like 6 134 4.9E-21 T 15-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 158 32.85 T 15-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 SUPERFAMILY SSF52374 2 156 3.49E-43 T 15-10-2018 NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 2.2E-46 T 15-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 2.2E-46 T 15-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 2.2E-46 T 15-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 2.2E-46 T 15-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 2.2E-46 T 15-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 3 77 0.001 T 15-10-2018 NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 Gene3D G3DSA:3.40.50.620 1 158 2.2E-53 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 63 3.6E-15 T 15-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NJ56_05885 9292343dcf1a68048e72fc52943c87ef 158 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 157 9.1E-57 T 15-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 318 3.8E-68 T 15-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 15-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 Gene3D G3DSA:3.50.50.60 5 318 4.2E-123 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 4.0E-66 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 4.0E-66 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 4.0E-66 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 356 4.0E-66 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 4.0E-66 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 4.0E-66 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 4.0E-66 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 4.0E-66 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 4.0E-66 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 Gene3D G3DSA:3.50.50.60 144 261 4.2E-123 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PIRSF PIRSF000350 1 447 2.0E-85 T 15-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 Gene3D G3DSA:3.30.390.30 338 450 1.9E-47 T 15-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 SUPERFAMILY SSF51905 1 365 2.07E-58 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 SUPERFAMILY SSF55424 336 450 1.22E-34 T 15-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 449 1.2E-33 T 15-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 450 5.9E-217 T 15-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.3E-28 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 1.3E-28 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 1.3E-28 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 1.3E-28 T 15-10-2018 NJ56_06800 c0e7570e4d040d4bed97af97da1d8820 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 1.3E-28 T 15-10-2018 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 Pfam PF07687 Peptidase dimerisation domain 200 289 6.9E-5 T 15-10-2018 IPR011650 Peptidase M20, dimerisation domain NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 482 1.1E-183 T 15-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 Gene3D G3DSA:3.40.630.10 1 229 4.6E-64 T 15-10-2018 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 Pfam PF01546 Peptidase family M20/M25/M40 72 480 3.7E-20 T 15-10-2018 IPR002933 Peptidase M20 GO:0016787 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 SUPERFAMILY SSF53187 10 483 9.14E-66 T 15-10-2018 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 9.4E-98 T 15-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 PRINTS PR00934 X-His dipeptidase (M25) signature 363 381 9.4E-98 T 15-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 PRINTS PR00934 X-His dipeptidase (M25) signature 428 444 9.4E-98 T 15-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 9.4E-98 T 15-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 9.4E-98 T 15-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 PRINTS PR00934 X-His dipeptidase (M25) signature 206 223 9.4E-98 T 15-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 PRINTS PR00934 X-His dipeptidase (M25) signature 450 472 9.4E-98 T 15-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 PRINTS PR00934 X-His dipeptidase (M25) signature 251 270 9.4E-98 T 15-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 9.4E-98 T 15-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 PIRSF PIRSF016599 1 485 1.2E-211 T 15-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 NJ56_01705 f205104a544b3db23cc121f25685bc5c 486 Gene3D G3DSA:3.40.630.10 343 486 2.9E-24 T 15-10-2018 NJ56_14840 fa2fd0eacbef4f108321b693f9a16503 201 Pfam PF02525 Flavodoxin-like fold 3 196 2.3E-48 T 15-10-2018 IPR003680 Flavodoxin-like fold NJ56_14840 fa2fd0eacbef4f108321b693f9a16503 201 SUPERFAMILY SSF52218 1 199 3.32E-60 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_14840 fa2fd0eacbef4f108321b693f9a16503 201 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 32.763 T 15-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 NJ56_14840 fa2fd0eacbef4f108321b693f9a16503 201 Gene3D G3DSA:3.40.50.360 1 201 1.7E-67 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_06185 957eecd81c189b0ed188474b20ee79e6 502 Gene3D G3DSA:3.40.50.300 1 221 5.4E-62 T 15-10-2018 NJ56_06185 957eecd81c189b0ed188474b20ee79e6 502 Pfam PF07728 AAA domain (dynein-related subfamily) 41 171 3.1E-24 T 15-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 NJ56_06185 957eecd81c189b0ed188474b20ee79e6 502 Hamap MF_01625 ATPase RavA [ravA]. 1 498 57.766 T 15-10-2018 IPR023671 ATPase RavA GO:0005737|GO:0016887 NJ56_06185 957eecd81c189b0ed188474b20ee79e6 502 Gene3D G3DSA:1.10.8.300 222 285 5.0E-27 T 15-10-2018 NJ56_06185 957eecd81c189b0ed188474b20ee79e6 502 SUPERFAMILY SSF52540 22 287 3.26E-19 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06185 957eecd81c189b0ed188474b20ee79e6 502 Gene3D G3DSA:2.40.128.430 331 440 3.4E-93 T 15-10-2018 NJ56_06185 957eecd81c189b0ed188474b20ee79e6 502 Pfam PF12592 Protein of unknown function (DUF3763) 443 497 2.8E-20 T 15-10-2018 IPR022547 ATPase, RavA, C-terminal GO:0042626 NJ56_06185 957eecd81c189b0ed188474b20ee79e6 502 SMART SM00382 38 187 3.9E-6 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_06185 957eecd81c189b0ed188474b20ee79e6 502 Gene3D G3DSA:1.20.58.1510 287 494 3.4E-93 T 15-10-2018 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 317 333 - T 15-10-2018 IPR013793 Porin, Gram-negative type, conserved site NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 53 64 1.5E-15 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 317 334 1.5E-15 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 231 243 1.5E-15 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 97 107 1.5E-15 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 154 165 1.5E-15 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 SUPERFAMILY SSF56935 23 365 5.27E-82 T 15-10-2018 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 268 287 5.4E-70 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 5.4E-70 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 5.4E-70 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 152 174 5.4E-70 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 237 254 5.4E-70 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 97 119 5.4E-70 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 Gene3D G3DSA:2.40.160.10 23 365 2.3E-150 T 15-10-2018 IPR023614 Porin domain superfamily NJ56_16820 fde1ea621fb88569ab7007350f184de8 365 Pfam PF00267 Gram-negative porin 28 365 9.5E-144 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_01915 3d0e0948f5ee50a8d101c3a36da21821 182 SUPERFAMILY SSF50346 106 182 2.35E-19 T 15-10-2018 IPR011033 PRC-barrel-like superfamily NJ56_01915 3d0e0948f5ee50a8d101c3a36da21821 182 Pfam PF05239 PRC-barrel domain 104 177 2.7E-9 T 15-10-2018 IPR027275 PRC-barrel domain NJ56_01915 3d0e0948f5ee50a8d101c3a36da21821 182 Pfam PF01782 RimM N-terminal domain 16 96 9.6E-25 T 15-10-2018 IPR002676 RimM, N-terminal GO:0006364 NJ56_01915 3d0e0948f5ee50a8d101c3a36da21821 182 Gene3D G3DSA:2.30.30.240 101 182 1.5E-30 T 15-10-2018 NJ56_01915 3d0e0948f5ee50a8d101c3a36da21821 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 13 182 23.673 T 15-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 NJ56_01915 3d0e0948f5ee50a8d101c3a36da21821 182 Gene3D G3DSA:2.40.30.60 6 100 2.8E-33 T 15-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 NJ56_01915 3d0e0948f5ee50a8d101c3a36da21821 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 14 182 3.4E-58 T 15-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 NJ56_01915 3d0e0948f5ee50a8d101c3a36da21821 182 SUPERFAMILY SSF50447 13 100 5.65E-24 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_12280 27312d6077f7808e9bf3598b85b25c39 491 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 218 230 - T 15-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 NJ56_12280 27312d6077f7808e9bf3598b85b25c39 491 Gene3D G3DSA:3.40.50.720 8 281 4.8E-107 T 15-10-2018 NJ56_12280 27312d6077f7808e9bf3598b85b25c39 491 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 4.3E-22 T 15-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 NJ56_12280 27312d6077f7808e9bf3598b85b25c39 491 PRINTS PR00084 Mannitol dehydrogenase signature 27 37 4.3E-22 T 15-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 NJ56_12280 27312d6077f7808e9bf3598b85b25c39 491 PRINTS PR00084 Mannitol dehydrogenase signature 248 263 4.3E-22 T 15-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 NJ56_12280 27312d6077f7808e9bf3598b85b25c39 491 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 4.3E-22 T 15-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 NJ56_12280 27312d6077f7808e9bf3598b85b25c39 491 SUPERFAMILY SSF51735 5 281 1.22E-94 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_12280 27312d6077f7808e9bf3598b85b25c39 491 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 26 188 8.0E-45 T 15-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 NJ56_12280 27312d6077f7808e9bf3598b85b25c39 491 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 216 463 1.8E-96 T 15-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 NJ56_12280 27312d6077f7808e9bf3598b85b25c39 491 SUPERFAMILY SSF48179 283 488 1.05E-68 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_12280 27312d6077f7808e9bf3598b85b25c39 491 Gene3D G3DSA:1.10.1040.10 282 491 1.6E-79 T 15-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NJ56_09760 e2a2c43d596639d4d73e4ac1162635c3 1160 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 292 734 3.1E-177 T 15-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_09760 e2a2c43d596639d4d73e4ac1162635c3 1160 Gene3D G3DSA:1.10.10.1600 433 510 8.1E-35 T 15-10-2018 NJ56_09760 e2a2c43d596639d4d73e4ac1162635c3 1160 Gene3D G3DSA:2.40.50.140 985 1074 2.6E-5 T 15-10-2018 NJ56_09760 e2a2c43d596639d4d73e4ac1162635c3 1160 SMART SM00481 7 74 4.3E-27 T 15-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal NJ56_09760 e2a2c43d596639d4d73e4ac1162635c3 1160 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1031 0.0 T 15-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_09760 e2a2c43d596639d4d73e4ac1162635c3 1160 Pfam PF14579 Helix-hairpin-helix motif 808 897 4.4E-24 T 15-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_09760 e2a2c43d596639d4d73e4ac1162635c3 1160 Gene3D G3DSA:3.20.20.140 1 270 1.0E-91 T 15-10-2018 NJ56_09760 e2a2c43d596639d4d73e4ac1162635c3 1160 SUPERFAMILY SSF89550 6 263 7.26E-16 T 15-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 NJ56_09760 e2a2c43d596639d4d73e4ac1162635c3 1160 Pfam PF01336 OB-fold nucleic acid binding domain 998 1071 4.8E-7 T 15-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 NJ56_09760 e2a2c43d596639d4d73e4ac1162635c3 1160 Pfam PF02811 PHP domain 8 171 1.2E-43 T 15-10-2018 IPR004013 PHP domain GO:0003824 NJ56_01935 03f458dd0bc338485f3da9b146646d29 414 SUPERFAMILY SSF54631 177 314 9.35E-23 T 15-10-2018 NJ56_01935 03f458dd0bc338485f3da9b146646d29 414 Gene3D G3DSA:3.30.465.10 325 403 1.3E-25 T 15-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 NJ56_01935 03f458dd0bc338485f3da9b146646d29 414 SMART SM01091 327 404 2.5E-24 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_01935 03f458dd0bc338485f3da9b146646d29 414 Pfam PF03471 Transporter associated domain 329 403 2.8E-18 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_01935 03f458dd0bc338485f3da9b146646d29 414 Gene3D G3DSA:3.10.580.10 186 315 4.0E-43 T 15-10-2018 NJ56_01935 03f458dd0bc338485f3da9b146646d29 414 Pfam PF01595 Domain of unknown function DUF21 2 169 7.1E-50 T 15-10-2018 IPR002550 CNNM, transmembrane domain NJ56_01935 03f458dd0bc338485f3da9b146646d29 414 SUPERFAMILY SSF56176 325 408 2.26E-20 T 15-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 SUPERFAMILY SSF53732 380 860 4.05E-151 T 15-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 ProSitePatterns PS00450 Aconitase family signature 1. 702 719 - T 15-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 Gene3D G3DSA:3.20.19.10 162 361 1.3E-79 T 15-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 SUPERFAMILY SSF74778 2 160 4.71E-68 T 15-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 Gene3D G3DSA:3.30.499.10 402 529 3.4E-152 T 15-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 Pfam PF11791 Aconitate B N-terminal domain 4 156 4.2E-67 T 15-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 Pfam PF00330 Aconitase family (aconitate hydratase) 472 818 9.1E-41 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 1.4E-97 T 15-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 PIRSF PIRSF036687 1 859 0.0 T 15-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 Gene3D G3DSA:1.25.40.310 1 161 5.5E-74 T 15-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 ProSitePatterns PS01244 Aconitase family signature 2. 761 774 - T 15-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 853 0.0 T 15-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 Gene3D G3DSA:3.30.499.10 683 865 1.3E-75 T 15-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 SUPERFAMILY SSF52016 163 371 9.42E-71 T 15-10-2018 NJ56_02575 07a43102ee45fed1c85becf2eb72158a 865 Gene3D G3DSA:3.40.1060.10 385 681 3.4E-152 T 15-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 NJ56_17140 800d1b983209dc78372308f032b05bfa 377 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_17140 800d1b983209dc78372308f032b05bfa 377 Gene3D G3DSA:2.40.50.140 302 356 2.0E-11 T 15-10-2018 NJ56_17140 800d1b983209dc78372308f032b05bfa 377 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 50 375 1.2E-147 T 15-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 NJ56_17140 800d1b983209dc78372308f032b05bfa 377 Gene3D G3DSA:3.40.50.300 19 238 8.5E-71 T 15-10-2018 NJ56_17140 800d1b983209dc78372308f032b05bfa 377 SMART SM00382 44 227 1.6E-18 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17140 800d1b983209dc78372308f032b05bfa 377 Pfam PF08402 TOBE domain 295 375 1.5E-18 T 15-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 NJ56_17140 800d1b983209dc78372308f032b05bfa 377 SUPERFAMILY SSF52540 19 257 2.05E-88 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17140 800d1b983209dc78372308f032b05bfa 377 SUPERFAMILY SSF50331 252 375 6.23E-16 T 15-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal NJ56_17140 800d1b983209dc78372308f032b05bfa 377 Pfam PF00005 ABC transporter 36 177 5.0E-39 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_17140 800d1b983209dc78372308f032b05bfa 377 Gene3D G3DSA:2.40.50.940 239 301 2.0E-11 T 15-10-2018 NJ56_14970 dec059a9a453c016f97f052a824cc4db 159 Gene3D G3DSA:3.20.80.10 1 156 1.1E-41 T 15-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily NJ56_14970 dec059a9a453c016f97f052a824cc4db 159 Pfam PF06445 GyrI-like small molecule binding domain 1 150 7.6E-28 T 15-10-2018 IPR029442 GyrI-like small molecule binding domain NJ56_14970 dec059a9a453c016f97f052a824cc4db 159 SUPERFAMILY SSF55136 1 155 3.27E-37 T 15-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily NJ56_14970 dec059a9a453c016f97f052a824cc4db 159 SMART SM00871 1 154 2.6E-36 T 15-10-2018 IPR010499 Bacterial transcription activator, effector binding NJ56_14970 dec059a9a453c016f97f052a824cc4db 159 Hamap MF_01896 DNA gyrase inhibitor [sbmC]. 1 156 38.91 T 15-10-2018 IPR024911 DNA gyrase inhibitor GyrI GO:0008657 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 Gene3D G3DSA:3.40.50.300 28 269 3.5E-81 T 15-10-2018 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 Hamap MF_00268 Protein RecA [recA]. 7 331 50.644 T 15-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 326 3.8E-170 T 15-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 SUPERFAMILY SSF54752 272 327 1.96E-20 T 15-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 SUPERFAMILY SSF52540 6 269 1.24E-63 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 PRINTS PR00142 RecA protein signature 212 240 1.2E-84 T 15-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 PRINTS PR00142 RecA protein signature 129 158 1.2E-84 T 15-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 PRINTS PR00142 RecA protein signature 299 316 1.2E-84 T 15-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 PRINTS PR00142 RecA protein signature 167 196 1.2E-84 T 15-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 PRINTS PR00142 RecA protein signature 245 274 1.2E-84 T 15-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 PRINTS PR00142 RecA protein signature 95 124 1.2E-84 T 15-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 SMART SM00382 59 230 1.2E-8 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 Pfam PF00154 recA bacterial DNA recombination protein 9 270 7.1E-141 T 15-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 ProSitePatterns PS00321 recA signature. 215 223 - T 15-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 NJ56_01995 5ba20697048fdc8ce9b1dea63d2d6698 356 Gene3D G3DSA:3.30.250.10 271 329 1.2E-25 T 15-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 Pfam PF01751 Toprim domain 414 523 4.9E-12 T 15-10-2018 IPR006171 TOPRIM domain NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 Gene3D G3DSA:3.40.50.670 391 624 6.3E-94 T 15-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 ProSitePatterns PS00177 DNA topoisomerase II signature. 417 425 - T 15-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 SUPERFAMILY SSF56719 389 622 2.62E-77 T 15-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 Gene3D G3DSA:3.30.230.10 217 390 3.2E-58 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 621 2.5E-24 T 15-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 5 626 0.0 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 172 3.0E-16 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 Gene3D G3DSA:3.30.565.10 3 216 4.7E-76 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 136 150 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 504 520 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 363 388 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 193 214 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 538 560 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 150 165 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 312 327 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 295 311 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 470 482 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 449 470 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 27 40 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 175 192 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 239 262 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR01098 Topoisomerase IV subunit B signature 339 362 2.9E-151 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 SMART SM00387 28 174 4.3E-19 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 SMART SM00433 35 625 4.5E-208 T 15-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 SUPERFAMILY SSF55874 6 216 6.57E-69 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 SUPERFAMILY SSF54211 218 383 1.06E-45 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 Pfam PF00204 DNA gyrase B 219 385 3.2E-39 T 15-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 3 629 47.143 T 15-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR00418 DNA topoisomerase II family signature 110 124 7.5E-59 T 15-10-2018 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR00418 DNA topoisomerase II family signature 480 496 7.5E-59 T 15-10-2018 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR00418 DNA topoisomerase II family signature 498 515 7.5E-59 T 15-10-2018 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR00418 DNA topoisomerase II family signature 67 80 7.5E-59 T 15-10-2018 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR00418 DNA topoisomerase II family signature 267 280 7.5E-59 T 15-10-2018 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR00418 DNA topoisomerase II family signature 32 47 7.5E-59 T 15-10-2018 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR00418 DNA topoisomerase II family signature 518 530 7.5E-59 T 15-10-2018 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR00418 DNA topoisomerase II family signature 561 577 7.5E-59 T 15-10-2018 NJ56_08745 871a970343fb867ccae1b8af2d2035a7 631 PRINTS PR00418 DNA topoisomerase II family signature 415 429 7.5E-59 T 15-10-2018 NJ56_13890 80cd5b96c1f462a17fe9fdbde107c485 479 Pfam PF07690 Major Facilitator Superfamily 38 432 6.4E-43 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_13890 80cd5b96c1f462a17fe9fdbde107c485 479 SUPERFAMILY SSF103473 30 476 6.28E-50 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_13890 80cd5b96c1f462a17fe9fdbde107c485 479 Gene3D G3DSA:1.20.1250.20 282 477 1.7E-13 T 15-10-2018 NJ56_13890 80cd5b96c1f462a17fe9fdbde107c485 479 Gene3D G3DSA:1.20.1720.10 33 246 9.4E-31 T 15-10-2018 NJ56_17760 d5b75a8c60fe72530104440978c1f316 288 Gene3D G3DSA:3.40.30.10 107 283 2.0E-25 T 15-10-2018 NJ56_17760 d5b75a8c60fe72530104440978c1f316 288 SUPERFAMILY SSF52833 121 267 8.1E-20 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_17760 d5b75a8c60fe72530104440978c1f316 288 SUPERFAMILY SSF54423 60 109 2.55E-5 T 15-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 NJ56_17760 d5b75a8c60fe72530104440978c1f316 288 Pfam PF13098 Thioredoxin-like domain 141 264 7.0E-13 T 15-10-2018 IPR012336 Thioredoxin-like fold NJ56_17760 d5b75a8c60fe72530104440978c1f316 288 Pfam PF10411 Disulfide bond isomerase protein N-terminus 55 93 5.1E-8 T 15-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal NJ56_16650 1fdc4b45477b8b604a3a5ed82d038241 522 SUPERFAMILY SSF81296 409 521 3.22E-32 T 15-10-2018 IPR014756 Immunoglobulin E-set NJ56_16650 1fdc4b45477b8b604a3a5ed82d038241 522 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 17 520 60.863 T 15-10-2018 IPR023704 Glucan biosynthesis protein G NJ56_16650 1fdc4b45477b8b604a3a5ed82d038241 522 SUPERFAMILY SSF74650 34 404 2.1E-162 T 15-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 NJ56_16650 1fdc4b45477b8b604a3a5ed82d038241 522 PIRSF PIRSF006281 4 522 4.0E-236 T 15-10-2018 IPR014438 Glucan biosynthesis protein MdoG/MdoD NJ56_16650 1fdc4b45477b8b604a3a5ed82d038241 522 Gene3D G3DSA:2.70.98.10 33 408 1.1E-168 T 15-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 NJ56_16650 1fdc4b45477b8b604a3a5ed82d038241 522 Gene3D G3DSA:2.60.40.10 409 522 9.6E-47 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_16650 1fdc4b45477b8b604a3a5ed82d038241 522 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 34 518 6.3E-196 T 15-10-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 NJ56_10365 369950003b2d32fb646da6ec67191cf6 303 Pfam PF01926 50S ribosome-binding GTPase 12 126 1.2E-22 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_10365 369950003b2d32fb646da6ec67191cf6 303 Gene3D G3DSA:3.40.50.300 3 185 2.7E-50 T 15-10-2018 NJ56_10365 369950003b2d32fb646da6ec67191cf6 303 Hamap MF_00367 GTPase Era [era]. 7 298 35.773 T 15-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_10365 369950003b2d32fb646da6ec67191cf6 303 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 171 1.8E-41 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_10365 369950003b2d32fb646da6ec67191cf6 303 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 80 98 1.0E-5 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_10365 369950003b2d32fb646da6ec67191cf6 303 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 12 32 1.0E-5 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_10365 369950003b2d32fb646da6ec67191cf6 303 SUPERFAMILY SSF54814 183 298 1.83E-42 T 15-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 NJ56_10365 369950003b2d32fb646da6ec67191cf6 303 Gene3D G3DSA:3.30.300.20 187 303 1.8E-43 T 15-10-2018 IPR015946 K homology domain-like, alpha/beta NJ56_10365 369950003b2d32fb646da6ec67191cf6 303 Pfam PF07650 KH domain 210 286 5.9E-19 T 15-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_10365 369950003b2d32fb646da6ec67191cf6 303 SUPERFAMILY SSF52540 12 206 4.01E-44 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_10365 369950003b2d32fb646da6ec67191cf6 303 TIGRFAM TIGR00436 era: GTP-binding protein Era 10 281 6.6E-117 T 15-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_15390 632a8fe8894e66300da40f8be0adf658 241 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 178 234 1.0E-14 T 15-10-2018 IPR016148 Pili assembly chaperone, C-terminal NJ56_15390 632a8fe8894e66300da40f8be0adf658 241 Gene3D G3DSA:2.60.40.10 158 240 1.5E-28 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_15390 632a8fe8894e66300da40f8be0adf658 241 SUPERFAMILY SSF49354 28 157 7.33E-35 T 15-10-2018 IPR008962 PapD-like superfamily NJ56_15390 632a8fe8894e66300da40f8be0adf658 241 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 28 157 1.3E-32 T 15-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 NJ56_15390 632a8fe8894e66300da40f8be0adf658 241 PRINTS PR00969 Pili chaperone signature 72 93 9.2E-33 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_15390 632a8fe8894e66300da40f8be0adf658 241 PRINTS PR00969 Pili chaperone signature 100 117 9.2E-33 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_15390 632a8fe8894e66300da40f8be0adf658 241 PRINTS PR00969 Pili chaperone signature 139 154 9.2E-33 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_15390 632a8fe8894e66300da40f8be0adf658 241 PRINTS PR00969 Pili chaperone signature 173 188 9.2E-33 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_15390 632a8fe8894e66300da40f8be0adf658 241 PRINTS PR00969 Pili chaperone signature 28 37 9.2E-33 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_15390 632a8fe8894e66300da40f8be0adf658 241 Gene3D G3DSA:2.60.40.10 28 155 4.9E-42 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_15390 632a8fe8894e66300da40f8be0adf658 241 SUPERFAMILY SSF49584 160 237 7.33E-22 T 15-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR00418 DNA topoisomerase II family signature 487 503 1.4E-70 T 15-10-2018 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR00418 DNA topoisomerase II family signature 736 752 1.4E-70 T 15-10-2018 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR00418 DNA topoisomerase II family signature 113 127 1.4E-70 T 15-10-2018 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR00418 DNA topoisomerase II family signature 505 522 1.4E-70 T 15-10-2018 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR00418 DNA topoisomerase II family signature 525 537 1.4E-70 T 15-10-2018 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR00418 DNA topoisomerase II family signature 70 83 1.4E-70 T 15-10-2018 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR00418 DNA topoisomerase II family signature 268 281 1.4E-70 T 15-10-2018 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR00418 DNA topoisomerase II family signature 35 50 1.4E-70 T 15-10-2018 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR00418 DNA topoisomerase II family signature 420 434 1.4E-70 T 15-10-2018 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 804 0.0 T 15-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 Gene3D G3DSA:3.40.50.670 707 802 1.4E-25 T 15-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 Pfam PF00204 DNA gyrase B 221 390 1.6E-59 T 15-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 SUPERFAMILY SSF55874 4 220 1.24E-77 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 Pfam PF01751 Toprim domain 419 531 5.2E-18 T 15-10-2018 IPR006171 TOPRIM domain NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 Gene3D G3DSA:3.10.20.690 592 683 1.8E-36 T 15-10-2018 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 SUPERFAMILY SSF56719 394 795 1.41E-86 T 15-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 804 109.918 T 15-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 SUPERFAMILY SSF54211 221 392 4.17E-62 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 Gene3D G3DSA:3.30.565.10 1 220 2.6E-97 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 173 6.9E-22 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR01159 DNA gyrase subunit B signature 181 196 1.2E-79 T 15-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR01159 DNA gyrase subunit B signature 196 209 1.2E-79 T 15-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR01159 DNA gyrase subunit B signature 374 394 1.2E-79 T 15-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR01159 DNA gyrase subunit B signature 470 479 1.2E-79 T 15-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR01159 DNA gyrase subunit B signature 312 328 1.2E-79 T 15-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR01159 DNA gyrase subunit B signature 757 769 1.2E-79 T 15-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR01159 DNA gyrase subunit B signature 220 242 1.2E-79 T 15-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR01159 DNA gyrase subunit B signature 773 789 1.2E-79 T 15-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR01159 DNA gyrase subunit B signature 5 15 1.2E-79 T 15-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 PRINTS PR01159 DNA gyrase subunit B signature 360 374 1.2E-79 T 15-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 Gene3D G3DSA:3.30.230.10 221 392 3.1E-75 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 733 793 1.2E-29 T 15-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 Gene3D G3DSA:3.40.50.670 398 570 2.3E-74 T 15-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 SMART SM00433 35 797 4.0E-281 T 15-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 SMART SM00387 31 175 3.3E-31 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_06405 7a8c84d9b8473ffbeaf165cfb0fe35ea 804 ProSitePatterns PS00177 DNA topoisomerase II signature. 422 430 - T 15-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 SUPERFAMILY SSF55594 287 374 3.53E-23 T 15-10-2018 IPR035895 HPr-like superfamily NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 Gene3D G3DSA:3.40.930.10 1 143 1.2E-39 T 15-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 139 2.0E-29 T 15-10-2018 IPR002178 PTS EIIA type-2 domain NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 Pfam PF00381 PTS HPr component phosphorylation site 287 369 7.5E-24 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 326 341 - T 15-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 SUPERFAMILY SSF55804 2 140 2.22E-38 T 15-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 15-10-2018 IPR002178 PTS EIIA type-2 domain NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 297 304 - T 15-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 286 368 3.7E-22 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 SUPERFAMILY SSF55804 148 276 5.41E-13 T 15-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 Gene3D G3DSA:3.30.1340.10 286 370 1.9E-25 T 15-10-2018 IPR035895 HPr-like superfamily NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 PRINTS PR00107 Phosphocarrier protein signature 325 340 7.8E-18 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 PRINTS PR00107 Phosphocarrier protein signature 340 357 7.8E-18 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_12325 4666ac43c88a180ed34a8b5450ebb644 377 PRINTS PR00107 Phosphocarrier protein signature 297 313 7.8E-18 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_03345 4cf8dd73dd3f090eab8b1ec21c22a188 426 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 6 424 1.2E-196 T 15-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 NJ56_03345 4cf8dd73dd3f090eab8b1ec21c22a188 426 PIRSF PIRSF009264 1 426 3.4E-203 T 15-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 NJ56_03345 4cf8dd73dd3f090eab8b1ec21c22a188 426 Gene3D G3DSA:1.10.400.20 287 410 1.3E-171 T 15-10-2018 NJ56_03345 4cf8dd73dd3f090eab8b1ec21c22a188 426 SUPERFAMILY SSF51569 4 425 4.21E-171 T 15-10-2018 NJ56_03345 4cf8dd73dd3f090eab8b1ec21c22a188 426 Pfam PF08013 Tagatose 6 phosphate kinase 4 424 1.6E-198 T 15-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 NJ56_03345 4cf8dd73dd3f090eab8b1ec21c22a188 426 Gene3D G3DSA:3.20.20.70 8 414 1.3E-171 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_12800 760dbba14dfad2575801f46b54391020 165 Gene3D G3DSA:2.30.30.40 20 145 1.2E-39 T 15-10-2018 NJ56_12800 760dbba14dfad2575801f46b54391020 165 Gene3D G3DSA:2.40.50.180 37 146 1.2E-39 T 15-10-2018 NJ56_12800 760dbba14dfad2575801f46b54391020 165 Pfam PF01584 CheW-like domain 18 154 8.5E-37 T 15-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 NJ56_12800 760dbba14dfad2575801f46b54391020 165 SUPERFAMILY SSF50341 17 158 3.4E-39 T 15-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 NJ56_12800 760dbba14dfad2575801f46b54391020 165 SMART SM00260 14 151 4.9E-42 T 15-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 NJ56_14760 fadb8925e8800ffc8d46ce48a859ab6c 167 Hamap MF_00269 Thiol peroxidase [tpx]. 4 167 39.661 T 15-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 NJ56_14760 fadb8925e8800ffc8d46ce48a859ab6c 167 Gene3D G3DSA:3.40.30.10 1 167 1.9E-47 T 15-10-2018 NJ56_14760 fadb8925e8800ffc8d46ce48a859ab6c 167 Pfam PF08534 Redoxin 20 163 1.5E-29 T 15-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 NJ56_14760 fadb8925e8800ffc8d46ce48a859ab6c 167 ProSitePatterns PS01265 Tpx family signature. 84 95 - T 15-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 NJ56_14760 fadb8925e8800ffc8d46ce48a859ab6c 167 SUPERFAMILY SSF52833 4 163 2.29E-43 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_10760 c966547aaeb47ee6e6564b84bfb1528d 349 Gene3D G3DSA:2.60.40.1090 206 349 2.6E-23 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_10760 c966547aaeb47ee6e6564b84bfb1528d 349 SUPERFAMILY SSF49401 207 349 4.32E-19 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_10760 c966547aaeb47ee6e6564b84bfb1528d 349 Pfam PF00419 Fimbrial protein 198 349 2.2E-15 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_00540 977c73ddc5d4d913d27164ef08cd745a 406 Gene3D G3DSA:3.30.420.40 93 386 1.4E-90 T 15-10-2018 NJ56_00540 977c73ddc5d4d913d27164ef08cd745a 406 Gene3D G3DSA:3.30.420.40 210 378 1.4E-90 T 15-10-2018 NJ56_00540 977c73ddc5d4d913d27164ef08cd745a 406 ProSitePatterns PS01125 ROK family signature. 220 247 - T 15-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 NJ56_00540 977c73ddc5d4d913d27164ef08cd745a 406 Pfam PF01047 MarR family 25 63 3.3E-7 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_00540 977c73ddc5d4d913d27164ef08cd745a 406 SUPERFAMILY SSF46785 14 79 2.16E-17 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_00540 977c73ddc5d4d913d27164ef08cd745a 406 SUPERFAMILY SSF53067 88 394 2.65E-57 T 15-10-2018 NJ56_00540 977c73ddc5d4d913d27164ef08cd745a 406 Pfam PF00480 ROK family 88 392 3.6E-91 T 15-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 NJ56_00540 977c73ddc5d4d913d27164ef08cd745a 406 Gene3D G3DSA:1.10.10.10 5 81 2.4E-20 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_07260 b9f4f1e9208a048b7938225a57161cde 327 Gene3D G3DSA:3.40.50.2000 171 325 4.3E-20 T 15-10-2018 NJ56_07260 b9f4f1e9208a048b7938225a57161cde 327 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 153 299 3.1E-12 T 15-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 NJ56_07260 b9f4f1e9208a048b7938225a57161cde 327 Gene3D G3DSA:3.40.50.2000 1 166 1.5E-21 T 15-10-2018 NJ56_07260 b9f4f1e9208a048b7938225a57161cde 327 SUPERFAMILY SSF53756 3 323 8.16E-53 T 15-10-2018 NJ56_00680 e4d986707204b57766aa90d8ec87fd92 370 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 11 366 28.836 T 15-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_00680 e4d986707204b57766aa90d8ec87fd92 370 Pfam PF01098 Cell cycle protein 22 364 1.5E-121 T 15-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_00680 e4d986707204b57766aa90d8ec87fd92 370 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 364 8.7E-136 T 15-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_00680 e4d986707204b57766aa90d8ec87fd92 370 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 321 345 - T 15-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 SMART SM00387 343 455 4.6E-28 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 448 7.1E-22 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 Pfam PF00512 His Kinase A (phospho-acceptor) domain 234 297 9.3E-15 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 Pfam PF00672 HAMP domain 181 229 6.6E-13 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 1.4E-10 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 1.4E-10 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 1.4E-10 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 SUPERFAMILY SSF47384 217 298 1.0E-15 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 Gene3D G3DSA:1.10.287.130 178 293 3.7E-28 T 15-10-2018 NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 SUPERFAMILY SSF158472 181 229 4.84E-10 T 15-10-2018 NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 Gene3D G3DSA:3.30.565.10 303 454 2.7E-36 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 SMART SM00388 234 298 5.7E-16 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 SUPERFAMILY SSF55874 287 451 9.04E-39 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_10730 97567b8cb0809e66d8e343155ef47f32 459 SMART SM00304 181 233 1.1E-13 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_10500 4b0d67c0604134dd85d4dc163d152ea6 385 PIRSF PIRSF004925 1 383 7.8E-112 T 15-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter NJ56_10500 4b0d67c0604134dd85d4dc163d152ea6 385 Gene3D G3DSA:1.20.1250.20 191 381 4.1E-35 T 15-10-2018 NJ56_10500 4b0d67c0604134dd85d4dc163d152ea6 385 SUPERFAMILY SSF103473 7 372 3.79E-36 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_10500 4b0d67c0604134dd85d4dc163d152ea6 385 Pfam PF12832 MFS_1 like family 8 358 5.7E-47 T 15-10-2018 IPR024989 Major facilitator superfamily associated domain NJ56_10500 4b0d67c0604134dd85d4dc163d152ea6 385 Gene3D G3DSA:1.20.1250.20 4 183 5.0E-18 T 15-10-2018 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 PRINTS PR01022 Outer membrane protein A signature 288 307 4.4E-65 T 15-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 PRINTS PR01022 Outer membrane protein A signature 249 268 4.4E-65 T 15-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 PRINTS PR01022 Outer membrane protein A signature 220 235 4.4E-65 T 15-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 PRINTS PR01022 Outer membrane protein A signature 173 187 4.4E-65 T 15-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 PRINTS PR01022 Outer membrane protein A signature 187 201 4.4E-65 T 15-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 PRINTS PR01022 Outer membrane protein A signature 110 126 4.4E-65 T 15-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 PRINTS PR01022 Outer membrane protein A signature 322 335 4.4E-65 T 15-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 Gene3D G3DSA:2.40.160.20 22 200 3.5E-70 T 15-10-2018 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 SUPERFAMILY SSF56925 22 202 2.88E-41 T 15-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 Pfam PF01389 OmpA-like transmembrane domain 23 202 1.4E-71 T 15-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 SUPERFAMILY SSF103088 218 343 2.49E-32 T 15-10-2018 IPR036737 OmpA-like domain superfamily NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 PRINTS PR01021 OMPA domain signature 264 279 3.9E-19 T 15-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 PRINTS PR01021 OMPA domain signature 232 254 3.9E-19 T 15-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 PRINTS PR01021 OMPA domain signature 279 295 3.9E-19 T 15-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 Pfam PF00691 OmpA family 231 324 2.3E-20 T 15-10-2018 IPR006665 OmpA-like domain NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 ProSitePatterns PS01068 OmpA-like domain. 266 310 - T 15-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 NJ56_16740 f730d5ce90d36ddb05d2a203cf33bcf7 355 Gene3D G3DSA:3.30.1330.60 208 352 2.1E-54 T 15-10-2018 IPR036737 OmpA-like domain superfamily NJ56_07395 6094cd0fb6f0d830e9b7061db64a798e 232 Gene3D G3DSA:3.30.300.20 17 107 2.6E-29 T 15-10-2018 IPR015946 K homology domain-like, alpha/beta NJ56_07395 6094cd0fb6f0d830e9b7061db64a798e 232 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 15-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07395 6094cd0fb6f0d830e9b7061db64a798e 232 SMART SM00322 60 125 1.6E-6 T 15-10-2018 IPR004087 K Homology domain GO:0003676 NJ56_07395 6094cd0fb6f0d830e9b7061db64a798e 232 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 4.2E-100 T 15-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 NJ56_07395 6094cd0fb6f0d830e9b7061db64a798e 232 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.0E-41 T 15-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07395 6094cd0fb6f0d830e9b7061db64a798e 232 Gene3D G3DSA:3.30.1140.32 108 208 3.9E-46 T 15-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07395 6094cd0fb6f0d830e9b7061db64a798e 232 SUPERFAMILY SSF54814 2 106 1.73E-37 T 15-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 NJ56_07395 6094cd0fb6f0d830e9b7061db64a798e 232 SUPERFAMILY SSF54821 108 206 6.93E-41 T 15-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07395 6094cd0fb6f0d830e9b7061db64a798e 232 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.2 T 15-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 NJ56_07395 6094cd0fb6f0d830e9b7061db64a798e 232 Pfam PF07650 KH domain 38 111 7.3E-18 T 15-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_02040 008fa0087602dbf41b003844669297ea 657 Gene3D G3DSA:3.30.1370.120 278 361 6.4E-16 T 15-10-2018 IPR038591 NolW-like superfamily NJ56_02040 008fa0087602dbf41b003844669297ea 657 Pfam PF00263 Bacterial type II and III secretion system protein 432 597 7.8E-47 T 15-10-2018 IPR004846 Type II/III secretion system GO:0009306 NJ56_02040 008fa0087602dbf41b003844669297ea 657 Gene3D G3DSA:3.30.1370.120 207 276 6.2E-18 T 15-10-2018 IPR038591 NolW-like superfamily NJ56_02040 008fa0087602dbf41b003844669297ea 657 Gene3D G3DSA:3.30.1370.120 39 204 2.9E-51 T 15-10-2018 IPR038591 NolW-like superfamily NJ56_02040 008fa0087602dbf41b003844669297ea 657 PRINTS PR00811 Bacterial general secretion pathway protein D signature 463 473 4.6E-41 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_02040 008fa0087602dbf41b003844669297ea 657 PRINTS PR00811 Bacterial general secretion pathway protein D signature 561 579 4.6E-41 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_02040 008fa0087602dbf41b003844669297ea 657 PRINTS PR00811 Bacterial general secretion pathway protein D signature 584 598 4.6E-41 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_02040 008fa0087602dbf41b003844669297ea 657 PRINTS PR00811 Bacterial general secretion pathway protein D signature 428 452 4.6E-41 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_02040 008fa0087602dbf41b003844669297ea 657 PRINTS PR00811 Bacterial general secretion pathway protein D signature 360 370 4.6E-41 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_02040 008fa0087602dbf41b003844669297ea 657 Pfam PF03958 Bacterial type II/III secretion system short domain 283 360 9.9E-15 T 15-10-2018 IPR005644 NolW-like NJ56_02040 008fa0087602dbf41b003844669297ea 657 Pfam PF03958 Bacterial type II/III secretion system short domain 209 277 9.9E-13 T 15-10-2018 IPR005644 NolW-like NJ56_02040 008fa0087602dbf41b003844669297ea 657 Pfam PF03958 Bacterial type II/III secretion system short domain 145 205 2.7E-8 T 15-10-2018 IPR005644 NolW-like NJ56_02040 008fa0087602dbf41b003844669297ea 657 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 48 601 5.8E-159 T 15-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 NJ56_16915 82d4e309a05d739cdf88872b4fa18f61 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 15-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 NJ56_16915 82d4e309a05d739cdf88872b4fa18f61 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 5.9E-19 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_16915 82d4e309a05d739cdf88872b4fa18f61 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 5.9E-19 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_16915 82d4e309a05d739cdf88872b4fa18f61 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 5.9E-19 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_16915 82d4e309a05d739cdf88872b4fa18f61 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 30.517 T 15-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 NJ56_16915 82d4e309a05d739cdf88872b4fa18f61 94 SUPERFAMILY SSF47729 1 91 2.21E-29 T 15-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 NJ56_16915 82d4e309a05d739cdf88872b4fa18f61 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 2.6E-29 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_16915 82d4e309a05d739cdf88872b4fa18f61 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 8.7E-52 T 15-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 NJ56_16915 82d4e309a05d739cdf88872b4fa18f61 94 Gene3D G3DSA:4.10.520.10 40 94 1.3E-33 T 15-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 NJ56_16915 82d4e309a05d739cdf88872b4fa18f61 94 Gene3D G3DSA:4.10.520.10 2 39 8.2E-17 T 15-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 NJ56_16915 82d4e309a05d739cdf88872b4fa18f61 94 SMART SM00411 1 91 1.1E-41 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 Gene3D G3DSA:1.10.260.40 5 64 5.8E-7 T 15-10-2018 NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 SUPERFAMILY SSF47413 6 59 1.21E-9 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 Gene3D G3DSA:3.40.50.620 65 230 8.8E-44 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 Gene3D G3DSA:3.40.50.300 231 399 2.2E-57 T 15-10-2018 NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 SUPERFAMILY SSF52374 65 234 9.65E-21 T 15-10-2018 NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 Pfam PF13521 AAA domain 234 394 9.0E-33 T 15-10-2018 IPR038727 NadR/Ttd14, AAA domain NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 66 136 3.3E-19 T 15-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 SUPERFAMILY SSF52540 232 405 5.9E-27 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 PIRSF PIRSF004776 2 415 1.1E-215 T 15-10-2018 IPR016429 Bifunctional transcriptional regulator NadR GO:0045892 KEGG: 00760+2.7.7.1+2.7.1.22 NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 SMART SM00530 6 62 1.0E-8 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 TIGRFAM TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase 64 395 2.2E-153 T 15-10-2018 IPR006417 Nicotinamide-nucleotide adenylyltransferase GO:0000309|GO:0009435 KEGG: 00760+2.7.7.1+2.7.1.22 NJ56_03110 4c1d8f05f4acfb2c5b872d73d540f7ae 429 Pfam PF01381 Helix-turn-helix 7 58 2.7E-9 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 Gene3D G3DSA:1.10.8.540 501 589 5.7E-32 T 15-10-2018 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 137 160 - T 15-10-2018 IPR025505 FHIPEP conserved site NJ56_02195 73469299106a53b63eeb74225dd974cc 689 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 14 689 4.2E-247 T 15-10-2018 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 Pfam PF00771 FHIPEP family 26 681 9.0E-215 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 Gene3D G3DSA:1.10.490.80 591 689 1.6E-28 T 15-10-2018 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 Gene3D G3DSA:3.40.5.40 432 480 2.4E-37 T 15-10-2018 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 Gene3D G3DSA:3.40.30.60 360 499 2.4E-37 T 15-10-2018 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 232 246 1.1E-55 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 70 89 1.1E-55 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 33 46 1.1E-55 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 132 148 1.1E-55 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 151 169 1.1E-55 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 181 198 1.1E-55 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_02195 73469299106a53b63eeb74225dd974cc 689 PIRSF PIRSF005419 2 689 5.9E-206 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_04495 e702acb1b2fb9c335daced44f9cf15cb 217 TIGRFAM TIGR03746 conj_TIGR03746: integrating conjugative element protein, PFL_4703 family 4 204 7.1E-94 T 15-10-2018 IPR021548 Protein of unknown function DUF2895 NJ56_04495 e702acb1b2fb9c335daced44f9cf15cb 217 Pfam PF11444 Protein of unknown function (DUF2895) 7 203 7.4E-92 T 15-10-2018 IPR021548 Protein of unknown function DUF2895 NJ56_00870 da69a880b43662cfc1a26035c466646e 214 SUPERFAMILY SSF55729 9 154 6.18E-5 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_00870 da69a880b43662cfc1a26035c466646e 214 Pfam PF12261 Thermostable hemolysin 15 185 6.0E-56 T 15-10-2018 IPR022050 Thermostable hemolysin NJ56_09785 7d97e29b52ce1594a773de24db63b758 133 SUPERFAMILY SSF54593 3 129 6.31E-32 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_09785 7d97e29b52ce1594a773de24db63b758 133 Gene3D G3DSA:3.10.180.10 9 128 1.8E-32 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_09785 7d97e29b52ce1594a773de24db63b758 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 126 1.5E-20 T 15-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NJ56_09390 bed422bd4907645060b67dc7e7eb9e71 398 Gene3D G3DSA:1.20.81.30 49 168 3.9E-28 T 15-10-2018 NJ56_09390 bed422bd4907645060b67dc7e7eb9e71 398 Gene3D G3DSA:1.20.81.30 252 360 8.7E-22 T 15-10-2018 NJ56_09390 bed422bd4907645060b67dc7e7eb9e71 398 Pfam PF00482 Type II secretion system (T2SS), protein F 64 187 8.6E-27 T 15-10-2018 IPR018076 Type II secretion system F domain NJ56_09390 bed422bd4907645060b67dc7e7eb9e71 398 Pfam PF00482 Type II secretion system (T2SS), protein F 269 388 3.7E-23 T 15-10-2018 IPR018076 Type II secretion system F domain NJ56_09390 bed422bd4907645060b67dc7e7eb9e71 398 PRINTS PR00812 Bacterial general secretion pathway protein F signature 379 398 3.4E-32 T 15-10-2018 IPR003004 GspF/PilC family NJ56_09390 bed422bd4907645060b67dc7e7eb9e71 398 PRINTS PR00812 Bacterial general secretion pathway protein F signature 159 187 3.4E-32 T 15-10-2018 IPR003004 GspF/PilC family NJ56_09390 bed422bd4907645060b67dc7e7eb9e71 398 PRINTS PR00812 Bacterial general secretion pathway protein F signature 363 377 3.4E-32 T 15-10-2018 IPR003004 GspF/PilC family NJ56_09390 bed422bd4907645060b67dc7e7eb9e71 398 PRINTS PR00812 Bacterial general secretion pathway protein F signature 60 72 3.4E-32 T 15-10-2018 IPR003004 GspF/PilC family NJ56_09390 bed422bd4907645060b67dc7e7eb9e71 398 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 159 187 - T 15-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 NJ56_01045 b839f12c5f9c2945fc078d0dc7c4db5d 304 ProSitePatterns PS01270 Band 7 protein family signature. 132 160 - T 15-10-2018 IPR018080 Band 7/stomatin-like, conserved site NJ56_01045 b839f12c5f9c2945fc078d0dc7c4db5d 304 SUPERFAMILY SSF117892 49 183 6.93E-41 T 15-10-2018 IPR036013 Band 7/SPFH domain superfamily NJ56_01045 b839f12c5f9c2945fc078d0dc7c4db5d 304 Gene3D G3DSA:3.30.479.30 46 178 2.8E-42 T 15-10-2018 NJ56_01045 b839f12c5f9c2945fc078d0dc7c4db5d 304 PRINTS PR00721 Stomatin signature 128 151 2.0E-27 T 15-10-2018 IPR001972 Stomatin family GO:0016020 NJ56_01045 b839f12c5f9c2945fc078d0dc7c4db5d 304 PRINTS PR00721 Stomatin signature 171 192 2.0E-27 T 15-10-2018 IPR001972 Stomatin family GO:0016020 NJ56_01045 b839f12c5f9c2945fc078d0dc7c4db5d 304 PRINTS PR00721 Stomatin signature 108 125 2.0E-27 T 15-10-2018 IPR001972 Stomatin family GO:0016020 NJ56_01045 b839f12c5f9c2945fc078d0dc7c4db5d 304 PRINTS PR00721 Stomatin signature 152 170 2.0E-27 T 15-10-2018 IPR001972 Stomatin family GO:0016020 NJ56_01045 b839f12c5f9c2945fc078d0dc7c4db5d 304 PRINTS PR00721 Stomatin signature 73 94 2.0E-27 T 15-10-2018 IPR001972 Stomatin family GO:0016020 NJ56_01045 b839f12c5f9c2945fc078d0dc7c4db5d 304 Pfam PF01145 SPFH domain / Band 7 family 22 200 7.5E-31 T 15-10-2018 IPR001107 Band 7 domain NJ56_01045 b839f12c5f9c2945fc078d0dc7c4db5d 304 SMART SM00244 18 176 3.0E-59 T 15-10-2018 IPR001107 Band 7 domain NJ56_03555 f5e6e9b9ba40f9db5834bcb34901e052 478 Gene3D G3DSA:3.40.50.150 405 478 1.2E-11 T 15-10-2018 NJ56_03555 f5e6e9b9ba40f9db5834bcb34901e052 478 Gene3D G3DSA:3.40.50.150 95 347 1.3E-89 T 15-10-2018 NJ56_03555 f5e6e9b9ba40f9db5834bcb34901e052 478 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 98 459 1.0E-106 T 15-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 NJ56_03555 f5e6e9b9ba40f9db5834bcb34901e052 478 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 178 190 - T 15-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 NJ56_03555 f5e6e9b9ba40f9db5834bcb34901e052 478 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 280 293 9.1E-15 T 15-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 NJ56_03555 f5e6e9b9ba40f9db5834bcb34901e052 478 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 97 113 9.1E-15 T 15-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 NJ56_03555 f5e6e9b9ba40f9db5834bcb34901e052 478 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 226 240 9.1E-15 T 15-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 NJ56_03555 f5e6e9b9ba40f9db5834bcb34901e052 478 Pfam PF00145 C-5 cytosine-specific DNA methylase 96 457 3.7E-77 T 15-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 NJ56_03555 f5e6e9b9ba40f9db5834bcb34901e052 478 Gene3D G3DSA:1.10.260.140 26 94 2.4E-25 T 15-10-2018 NJ56_03555 f5e6e9b9ba40f9db5834bcb34901e052 478 SUPERFAMILY SSF53335 96 460 7.25E-76 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_03555 f5e6e9b9ba40f9db5834bcb34901e052 478 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 441 459 - T 15-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 NJ56_09945 e67cb4e8a1e77524b24b67a1122922d7 382 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 189 354 1.0E-25 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_09945 e67cb4e8a1e77524b24b67a1122922d7 382 SUPERFAMILY SSF161098 168 350 7.19E-43 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_09945 e67cb4e8a1e77524b24b67a1122922d7 382 Gene3D G3DSA:1.10.3720.10 166 355 1.8E-37 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_01040 a05630997add0b5537ac9319cb4245f0 284 SUPERFAMILY SSF48452 122 241 6.15E-8 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_01040 a05630997add0b5537ac9319cb4245f0 284 Gene3D G3DSA:1.25.40.10 197 284 1.6E-24 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_01040 a05630997add0b5537ac9319cb4245f0 284 Gene3D G3DSA:1.25.40.10 112 196 1.0E-24 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_01040 a05630997add0b5537ac9319cb4245f0 284 SUPERFAMILY SSF52833 3 113 4.65E-30 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_01040 a05630997add0b5537ac9319cb4245f0 284 Pfam PF14559 Tetratricopeptide repeat 124 190 6.2E-20 T 15-10-2018 NJ56_01040 a05630997add0b5537ac9319cb4245f0 284 Pfam PF14561 Tetratricopeptide repeat 195 284 3.8E-29 T 15-10-2018 NJ56_01040 a05630997add0b5537ac9319cb4245f0 284 Pfam PF00085 Thioredoxin 6 107 3.3E-19 T 15-10-2018 IPR013766 Thioredoxin domain GO:0045454 NJ56_01040 a05630997add0b5537ac9319cb4245f0 284 Gene3D G3DSA:3.40.30.10 2 111 2.4E-28 T 15-10-2018 NJ56_12600 b51c23de1d5873cefdcb0a0d6c20eeb6 245 Pfam PF13545 Crp-like helix-turn-helix domain 168 237 2.4E-15 T 15-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NJ56_12600 b51c23de1d5873cefdcb0a0d6c20eeb6 245 SUPERFAMILY SSF46785 166 239 1.34E-12 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_12600 b51c23de1d5873cefdcb0a0d6c20eeb6 245 Pfam PF00027 Cyclic nucleotide-binding domain 49 136 1.8E-14 T 15-10-2018 IPR000595 Cyclic nucleotide-binding domain NJ56_12600 b51c23de1d5873cefdcb0a0d6c20eeb6 245 Gene3D G3DSA:2.60.120.10 17 162 8.6E-26 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_12600 b51c23de1d5873cefdcb0a0d6c20eeb6 245 SMART SM00100 29 152 4.6E-7 T 15-10-2018 IPR000595 Cyclic nucleotide-binding domain NJ56_12600 b51c23de1d5873cefdcb0a0d6c20eeb6 245 Gene3D G3DSA:1.10.10.10 164 238 1.0E-15 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_12600 b51c23de1d5873cefdcb0a0d6c20eeb6 245 SMART SM00419 182 230 0.0018 T 15-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NJ56_12600 b51c23de1d5873cefdcb0a0d6c20eeb6 245 SUPERFAMILY SSF51206 19 159 4.32E-25 T 15-10-2018 IPR018490 Cyclic nucleotide-binding-like NJ56_14870 ebe328094a8e7a41896efa41c9e4fa42 275 Pfam PF12833 Helix-turn-helix domain 180 257 3.2E-15 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_14870 ebe328094a8e7a41896efa41c9e4fa42 275 SMART SM00342 174 256 1.0E-24 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_14870 ebe328094a8e7a41896efa41c9e4fa42 275 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 210 252 - T 15-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 NJ56_14870 ebe328094a8e7a41896efa41c9e4fa42 275 Gene3D G3DSA:1.10.10.60 154 268 4.9E-23 T 15-10-2018 NJ56_14870 ebe328094a8e7a41896efa41c9e4fa42 275 SUPERFAMILY SSF46689 209 259 1.12E-8 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_09250 0a5eb3c326c082716ff5c4c1cd089a4b 109 Hamap MF_02012 Cell division protein ZapA [zapA]. 1 109 33.686 T 15-10-2018 IPR023771 Cell division protein ZapA, eubacteria NJ56_09250 0a5eb3c326c082716ff5c4c1cd089a4b 109 Gene3D G3DSA:1.10.20.30 1 47 5.0E-26 T 15-10-2018 NJ56_09250 0a5eb3c326c082716ff5c4c1cd089a4b 109 Pfam PF05164 Cell division protein ZapA 6 90 2.6E-19 T 15-10-2018 IPR007838 Cell division protein ZapA-like NJ56_09250 0a5eb3c326c082716ff5c4c1cd089a4b 109 Gene3D G3DSA:1.20.5.50 48 102 4.1E-6 T 15-10-2018 NJ56_09250 0a5eb3c326c082716ff5c4c1cd089a4b 109 SUPERFAMILY SSF102829 6 94 4.97E-25 T 15-10-2018 IPR036192 Cell division protein ZapA-like superfamily NJ56_15850 640430c21b13da7a4564aa293d901cc3 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 15-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 NJ56_15850 640430c21b13da7a4564aa293d901cc3 173 Gene3D G3DSA:3.30.420.10 2 159 9.1E-54 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_15850 640430c21b13da7a4564aa293d901cc3 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.323 T 15-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 NJ56_15850 640430c21b13da7a4564aa293d901cc3 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 158 1.5E-79 T 15-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 NJ56_15850 640430c21b13da7a4564aa293d901cc3 173 SUPERFAMILY SSF53098 3 156 3.79E-54 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_15850 640430c21b13da7a4564aa293d901cc3 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 1.4E-42 T 15-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 NJ56_15850 640430c21b13da7a4564aa293d901cc3 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 1.4E-42 T 15-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 NJ56_15850 640430c21b13da7a4564aa293d901cc3 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 1.4E-42 T 15-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 NJ56_15850 640430c21b13da7a4564aa293d901cc3 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 1.4E-42 T 15-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 NJ56_15850 640430c21b13da7a4564aa293d901cc3 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 1.4E-42 T 15-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 NJ56_15850 640430c21b13da7a4564aa293d901cc3 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 4.4E-65 T 15-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 28 36 - T 15-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 104 114 - T 15-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 Gene3D G3DSA:3.40.50.1170 23 231 1.0E-81 T 15-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 Gene3D G3DSA:3.40.50.40 232 345 1.9E-41 T 15-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 PIRSF PIRSF001220 21 345 4.5E-89 T 15-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 SUPERFAMILY SSF53774 24 343 1.24E-101 T 15-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 Pfam PF00710 Asparaginase, N-terminal 25 214 6.9E-60 T 15-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 PIRSF PIRSF500176 22 345 1.0E-79 T 15-10-2018 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 SMART SM00870 25 339 1.0E-136 T 15-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 PRINTS PR00139 Asparaginase/glutaminase family signature 26 37 9.2E-23 T 15-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 PRINTS PR00139 Asparaginase/glutaminase family signature 103 121 9.2E-23 T 15-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 PRINTS PR00139 Asparaginase/glutaminase family signature 279 297 9.2E-23 T 15-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 NJ56_16940 d21d3121eb36774efffcb54d95f896da 345 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 6 342 6.6E-150 T 15-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 NJ56_15060 71b0d4edad033ffbf29789c07fd7b875 125 ProDom PD073251 YNFB PERIPLASMIC SECRETED ORF9 PRECURSOR SIGNAL SIMILAR ECS2289 EXPORTED ESCHERICHIA 36 125 5.0E-34 T 15-10-2018 IPR009700 Protein of unknown function DUF1283 NJ56_15060 71b0d4edad033ffbf29789c07fd7b875 125 Hamap MF_01581 UPF0482 protein YnfB [ynfB]. 1 125 28.673 T 15-10-2018 IPR009700 Protein of unknown function DUF1283 NJ56_15060 71b0d4edad033ffbf29789c07fd7b875 125 Pfam PF06932 Protein of unknown function (DUF1283) 41 125 1.4E-37 T 15-10-2018 IPR009700 Protein of unknown function DUF1283 NJ56_01315 b96927df7c941e1e2858450621db7b79 593 Pfam PF00005 ABC transporter 357 505 1.7E-29 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_01315 b96927df7c941e1e2858450621db7b79 593 Pfam PF00664 ABC transporter transmembrane region 25 295 2.4E-41 T 15-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 NJ56_01315 b96927df7c941e1e2858450621db7b79 593 Gene3D G3DSA:1.20.1560.10 1 327 8.8E-72 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_01315 b96927df7c941e1e2858450621db7b79 593 SUPERFAMILY SSF90123 12 324 7.85E-68 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_01315 b96927df7c941e1e2858450621db7b79 593 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_01315 b96927df7c941e1e2858450621db7b79 593 SMART SM00382 366 557 4.7E-14 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_01315 b96927df7c941e1e2858450621db7b79 593 Gene3D G3DSA:3.40.50.300 338 586 3.3E-80 T 15-10-2018 NJ56_01315 b96927df7c941e1e2858450621db7b79 593 SUPERFAMILY SSF52540 336 576 1.45E-77 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04780 c8a938782c6f8a4648f1fc77dd69bdf9 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-16 T 15-10-2018 NJ56_04780 c8a938782c6f8a4648f1fc77dd69bdf9 142 Gene3D G3DSA:1.10.10.250 73 141 6.7E-28 T 15-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily NJ56_04780 c8a938782c6f8a4648f1fc77dd69bdf9 142 SMART SM00649 9 141 8.9E-86 T 15-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 NJ56_04780 c8a938782c6f8a4648f1fc77dd69bdf9 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 15-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_04780 c8a938782c6f8a4648f1fc77dd69bdf9 142 SUPERFAMILY SSF54747 3 73 2.49E-30 T 15-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily NJ56_04780 c8a938782c6f8a4648f1fc77dd69bdf9 142 Gene3D G3DSA:3.30.1550.10 2 72 2.1E-35 T 15-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily NJ56_04780 c8a938782c6f8a4648f1fc77dd69bdf9 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 31.078 T 15-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 NJ56_04780 c8a938782c6f8a4648f1fc77dd69bdf9 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 5.8E-30 T 15-10-2018 IPR020784 Ribosomal protein L11, N-terminal NJ56_04780 c8a938782c6f8a4648f1fc77dd69bdf9 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 5.2E-25 T 15-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 NJ56_04780 c8a938782c6f8a4648f1fc77dd69bdf9 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 1.4E-65 T 15-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_04780 c8a938782c6f8a4648f1fc77dd69bdf9 142 SUPERFAMILY SSF46906 68 141 1.19E-26 T 15-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily NJ56_17170 9a9b87c8e7388ecbde5b4d7ef8612b7b 246 SUPERFAMILY SSF48317 27 238 2.94E-12 T 15-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily NJ56_17170 9a9b87c8e7388ecbde5b4d7ef8612b7b 246 Pfam PF01569 PAP2 superfamily 116 235 1.9E-7 T 15-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NJ56_17170 9a9b87c8e7388ecbde5b4d7ef8612b7b 246 Gene3D G3DSA:1.20.144.10 155 246 8.8E-6 T 15-10-2018 NJ56_07145 554e2b9304e32dd6ac8505ea14268505 108 Gene3D G3DSA:2.102.10.10 1 108 2.3E-34 T 15-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 NJ56_07145 554e2b9304e32dd6ac8505ea14268505 108 SUPERFAMILY SSF50022 1 107 5.45E-36 T 15-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 NJ56_07145 554e2b9304e32dd6ac8505ea14268505 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 3 107 1.5E-38 T 15-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 NJ56_07145 554e2b9304e32dd6ac8505ea14268505 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 3 107 6.1E-41 T 15-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 NJ56_05200 83192b7d0cd8a1656ff8d76c8cd854da 206 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 18 202 1.1E-60 T 15-10-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 NJ56_05200 83192b7d0cd8a1656ff8d76c8cd854da 206 Pfam PF01810 LysE type translocator 14 204 1.6E-50 T 15-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 NJ56_02230 29bd614d4ffe09b1e825ac64978075c6 252 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 164 176 1.7E-12 T 15-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 NJ56_02230 29bd614d4ffe09b1e825ac64978075c6 252 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 117 130 1.7E-12 T 15-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 NJ56_02230 29bd614d4ffe09b1e825ac64978075c6 252 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 25 35 1.7E-12 T 15-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 NJ56_02230 29bd614d4ffe09b1e825ac64978075c6 252 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 97 112 1.7E-12 T 15-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 NJ56_02230 29bd614d4ffe09b1e825ac64978075c6 252 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 77 90 1.7E-12 T 15-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 NJ56_02230 29bd614d4ffe09b1e825ac64978075c6 252 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 6 190 1.7E-64 T 15-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 NJ56_02230 29bd614d4ffe09b1e825ac64978075c6 252 Gene3D G3DSA:3.30.70.1530 17 93 7.7E-30 T 15-10-2018 NJ56_02230 29bd614d4ffe09b1e825ac64978075c6 252 Pfam PF01514 Secretory protein of YscJ/FliF family 8 185 3.9E-18 T 15-10-2018 IPR006182 Secretory protein YscJ/FliF NJ56_02230 29bd614d4ffe09b1e825ac64978075c6 252 Gene3D G3DSA:3.30.300.30 94 199 1.2E-31 T 15-10-2018 NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 Gene3D G3DSA:3.90.780.10 326 541 7.5E-30 T 15-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 SUPERFAMILY SSF55816 336 547 1.26E-23 T 15-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 Pfam PF02872 5'-nucleotidase, C-terminal domain 338 488 3.9E-20 T 15-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 Gene3D G3DSA:3.60.21.10 17 322 1.6E-75 T 15-10-2018 IPR029052 Metallo-dependent phosphatase-like NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 ProSitePatterns PS00786 5'-nucleotidase signature 2. 103 114 - T 15-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 PRINTS PR01607 Apyrase family signature 253 273 4.5E-11 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 PRINTS PR01607 Apyrase family signature 22 40 4.5E-11 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 PRINTS PR01607 Apyrase family signature 199 216 4.5E-11 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 PRINTS PR01607 Apyrase family signature 226 249 4.5E-11 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 SUPERFAMILY SSF56300 17 323 4.16E-74 T 15-10-2018 NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 ProSitePatterns PS00785 5'-nucleotidase signature 1. 24 36 - T 15-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_00325 c66f43e58755c26be969beb955a97a9b 632 Pfam PF00149 Calcineurin-like phosphoesterase 25 243 5.4E-13 T 15-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 NJ56_06635 2caac34c46d8f04f40362e3880bf24bf 464 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 15-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 NJ56_06635 2caac34c46d8f04f40362e3880bf24bf 464 PIRSF PIRSF006060 1 464 1.1E-74 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_06635 2caac34c46d8f04f40362e3880bf24bf 464 Pfam PF00324 Amino acid permease 16 452 8.2E-108 T 15-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 NJ56_06635 2caac34c46d8f04f40362e3880bf24bf 464 Gene3D G3DSA:1.20.1740.10 7 461 8.4E-66 T 15-10-2018 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 SMART SM00919 163 401 5.3E-139 T 15-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 Pfam PF00390 Malic enzyme, N-terminal domain 19 151 1.4E-27 T 15-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 SUPERFAMILY SSF53223 10 161 9.35E-53 T 15-10-2018 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 Gene3D G3DSA:3.40.50.10380 1 160 7.2E-69 T 15-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 SUPERFAMILY SSF51735 163 453 2.83E-86 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_11000 64162428ca4a41422eef841b0077b40d 759 Pfam PF03949 Malic enzyme, NAD binding domain 165 359 4.2E-17 T 15-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 Gene3D G3DSA:3.40.50.720 161 446 1.4E-81 T 15-10-2018 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 15-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 SUPERFAMILY SSF53659 430 754 2.43E-91 T 15-10-2018 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 PIRSF PIRSF036684 1 758 0.0 T 15-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 751 1.2E-95 T 15-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 Gene3D G3DSA:3.40.50.10750 573 727 2.5E-92 T 15-10-2018 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 SMART SM01274 18 151 1.2E-80 T 15-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 NJ56_11000 64162428ca4a41422eef841b0077b40d 759 Gene3D G3DSA:3.40.50.10950 447 751 2.5E-92 T 15-10-2018 NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 Pfam PF12833 Helix-turn-helix domain 27 105 1.6E-20 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 Pfam PF06445 GyrI-like small molecule binding domain 128 287 8.3E-25 T 15-10-2018 IPR029442 GyrI-like small molecule binding domain NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 SUPERFAMILY SSF55136 123 287 4.01E-56 T 15-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 SMART SM00342 21 104 5.4E-32 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 SUPERFAMILY SSF46689 57 107 5.82E-12 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 Gene3D G3DSA:3.20.80.10 122 288 6.7E-50 T 15-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 SUPERFAMILY SSF46689 6 55 6.5E-11 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 4.3E-5 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 4.3E-5 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 SMART SM00871 126 287 6.9E-20 T 15-10-2018 IPR010499 Bacterial transcription activator, effector binding NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 15-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 Gene3D G3DSA:1.10.10.60 56 121 2.2E-20 T 15-10-2018 NJ56_03065 1847da7315655edb90c6e7e41c62d7ba 288 Gene3D G3DSA:1.10.10.60 3 55 1.8E-27 T 15-10-2018 NJ56_12550 3492cb863a75423666a40ddabd97244a 69 SUPERFAMILY SSF57716 35 68 3.99E-6 T 15-10-2018 NJ56_12550 3492cb863a75423666a40ddabd97244a 69 Gene3D G3DSA:1.20.120.910 3 69 6.0E-15 T 15-10-2018 NJ56_12550 3492cb863a75423666a40ddabd97244a 69 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 31 66 1.5E-9 T 15-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 NJ56_12550 3492cb863a75423666a40ddabd97244a 69 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 3 65 4.2E-23 T 15-10-2018 IPR012783 Zinc finger, C4 DksA/TraR-type NJ56_17120 72a39d39ae28c2c369496d3306ff6973 379 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 357 367 - T 15-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site NJ56_17120 72a39d39ae28c2c369496d3306ff6973 379 TIGRFAM TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB 2 374 7.1E-203 T 15-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 NJ56_17120 72a39d39ae28c2c369496d3306ff6973 379 Gene3D G3DSA:3.40.1350.30 56 211 6.0E-73 T 15-10-2018 NJ56_17120 72a39d39ae28c2c369496d3306ff6973 379 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 21 374 2.0E-16 T 15-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 NJ56_17120 72a39d39ae28c2c369496d3306ff6973 379 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 307 338 - T 15-10-2018 IPR030390 RNA methyltransferase TrmA, active site NJ56_17120 72a39d39ae28c2c369496d3306ff6973 379 SUPERFAMILY SSF53335 3 374 9.46E-53 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_17120 72a39d39ae28c2c369496d3306ff6973 379 Hamap MF_01012 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [rlmC]. 1 375 80.045 T 15-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 NJ56_17120 72a39d39ae28c2c369496d3306ff6973 379 Gene3D G3DSA:3.40.50.150 14 368 6.0E-73 T 15-10-2018 NJ56_09590 4c32e9391d705bd6c53b7382efe8aa2a 389 Pfam PF03562 MltA specific insert domain 90 260 3.6E-42 T 15-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 NJ56_09590 4c32e9391d705bd6c53b7382efe8aa2a 389 SMART SM00925 125 260 1.1E-72 T 15-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 NJ56_09590 4c32e9391d705bd6c53b7382efe8aa2a 389 PIRSF PIRSF019422 1 366 5.4E-86 T 15-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A NJ56_09590 4c32e9391d705bd6c53b7382efe8aa2a 389 Gene3D G3DSA:2.40.40.10 54 356 2.2E-156 T 15-10-2018 IPR036908 RlpA-like domain superfamily NJ56_09590 4c32e9391d705bd6c53b7382efe8aa2a 389 Pfam PF06725 3D domain 280 357 1.5E-24 T 15-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 NJ56_09590 4c32e9391d705bd6c53b7382efe8aa2a 389 Gene3D G3DSA:2.40.240.50 125 265 2.2E-156 T 15-10-2018 NJ56_09590 4c32e9391d705bd6c53b7382efe8aa2a 389 SUPERFAMILY SSF50685 25 356 7.67E-110 T 15-10-2018 IPR036908 RlpA-like domain superfamily NJ56_13370 ba158024efadb74e8e61b6cf57bbb24d 587 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 11 68 2.4E-23 T 15-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 NJ56_13370 ba158024efadb74e8e61b6cf57bbb24d 587 Pfam PF03237 Terminase-like family 162 384 2.4E-56 T 15-10-2018 IPR004921 Terminase large subunit, T4likevirus-type NJ56_13370 ba158024efadb74e8e61b6cf57bbb24d 587 Gene3D G3DSA:3.30.420.240 388 569 4.4E-11 T 15-10-2018 NJ56_13370 ba158024efadb74e8e61b6cf57bbb24d 587 Gene3D G3DSA:3.40.50.300 114 301 1.6E-20 T 15-10-2018 NJ56_13370 ba158024efadb74e8e61b6cf57bbb24d 587 Pfam PF17289 Terminase RNaseH-like domain 411 569 9.1E-41 T 15-10-2018 IPR035421 Terminase, large subunit gp17-like NJ56_01990 9a07e6177ee4429bbabf6dabcb6eea8a 213 Gene3D G3DSA:1.10.10.10 117 160 2.9E-16 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_01990 9a07e6177ee4429bbabf6dabcb6eea8a 213 Gene3D G3DSA:1.10.10.10 163 213 1.2E-20 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_01990 9a07e6177ee4429bbabf6dabcb6eea8a 213 Hamap MF_01114 Regulatory protein RecX [recX]. 4 213 14.38 T 15-10-2018 IPR003783 Regulatory protein RecX GO:0006282 NJ56_01990 9a07e6177ee4429bbabf6dabcb6eea8a 213 Pfam PF02631 RecX family 96 209 7.7E-31 T 15-10-2018 IPR003783 Regulatory protein RecX GO:0006282 NJ56_01990 9a07e6177ee4429bbabf6dabcb6eea8a 213 Gene3D G3DSA:1.10.10.10 21 67 4.3E-13 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_00425 d0adb159d407b823d066317ed6597389 317 Pfam PF04463 Protein of unknown function (DUF523) 7 148 8.4E-37 T 15-10-2018 IPR007553 Domain of unknown function DUF523 NJ56_00425 d0adb159d407b823d066317ed6597389 317 Pfam PF08349 Protein of unknown function (DUF1722) 191 308 3.2E-43 T 15-10-2018 IPR013560 Domain of unknown function DUF1722 NJ56_00425 d0adb159d407b823d066317ed6597389 317 PIRSF PIRSF037004 1 317 6.1E-130 T 15-10-2018 IPR017087 Uncharacterised conserved protein UCP037004 NJ56_06270 a34d1b345a482cb16217f24827a565da 460 Gene3D G3DSA:3.40.50.300 76 344 6.4E-113 T 15-10-2018 NJ56_06270 a34d1b345a482cb16217f24827a565da 460 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 460 2.7E-262 T 15-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 NJ56_06270 a34d1b345a482cb16217f24827a565da 460 SUPERFAMILY SSF52540 77 348 3.62E-90 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06270 a34d1b345a482cb16217f24827a565da 460 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 333 342 - T 15-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_06270 a34d1b345a482cb16217f24827a565da 460 SMART SM00382 142 405 1.2E-4 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_06270 a34d1b345a482cb16217f24827a565da 460 Gene3D G3DSA:1.10.1140.10 345 460 4.4E-60 T 15-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_06270 a34d1b345a482cb16217f24827a565da 460 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 342 3.8E-63 T 15-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_06270 a34d1b345a482cb16217f24827a565da 460 SUPERFAMILY SSF50615 1 75 3.66E-25 T 15-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_06270 a34d1b345a482cb16217f24827a565da 460 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 460 56.784 T 15-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 NJ56_06270 a34d1b345a482cb16217f24827a565da 460 SUPERFAMILY SSF47917 345 459 2.09E-55 T 15-10-2018 NJ56_06270 a34d1b345a482cb16217f24827a565da 460 Gene3D G3DSA:2.40.10.170 2 75 1.5E-30 T 15-10-2018 NJ56_06270 a34d1b345a482cb16217f24827a565da 460 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 72 1.3E-21 T 15-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_05685 89b79f77c1f36d99a8a963522876c292 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 30.521 T 15-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_05685 89b79f77c1f36d99a8a963522876c292 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 5.3E-22 T 15-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_05685 89b79f77c1f36d99a8a963522876c292 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 5.3E-22 T 15-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_05685 89b79f77c1f36d99a8a963522876c292 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 5.3E-22 T 15-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_05685 89b79f77c1f36d99a8a963522876c292 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 1.0E-32 T 15-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_05685 89b79f77c1f36d99a8a963522876c292 71 SUPERFAMILY SSF143800 1 66 1.96E-26 T 15-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_05685 89b79f77c1f36d99a8a963522876c292 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 15-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_05685 89b79f77c1f36d99a8a963522876c292 71 Gene3D G3DSA:2.30.170.50 1 70 1.3E-32 T 15-10-2018 NJ56_05685 89b79f77c1f36d99a8a963522876c292 71 Pfam PF01197 Ribosomal protein L31 1 64 3.7E-29 T 15-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07065 46fa9472143b1cd6bd2635ec4b91ddc2 181 ProSitePatterns PS00893 Nudix box signature. 79 100 - T 15-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NJ56_07065 46fa9472143b1cd6bd2635ec4b91ddc2 181 Gene3D G3DSA:3.90.79.10 7 181 9.3E-47 T 15-10-2018 NJ56_07065 46fa9472143b1cd6bd2635ec4b91ddc2 181 SUPERFAMILY SSF55811 3 179 7.18E-40 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_07065 46fa9472143b1cd6bd2635ec4b91ddc2 181 Pfam PF00293 NUDIX domain 45 124 4.3E-13 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_08865 bfc3033284ea6e092612e9c85e4ba932 438 PRINTS PR01032 Gene IV protein signature 318 346 3.4E-5 T 15-10-2018 NJ56_08865 bfc3033284ea6e092612e9c85e4ba932 438 PRINTS PR01032 Gene IV protein signature 371 393 3.4E-5 T 15-10-2018 NJ56_08865 bfc3033284ea6e092612e9c85e4ba932 438 PRINTS PR01032 Gene IV protein signature 212 235 3.4E-5 T 15-10-2018 NJ56_08865 bfc3033284ea6e092612e9c85e4ba932 438 Pfam PF13629 Pilus formation protein N terminal region 32 101 6.3E-9 T 15-10-2018 IPR032789 Pilus formation protein, N-terminal NJ56_08865 bfc3033284ea6e092612e9c85e4ba932 438 Pfam PF00263 Bacterial type II and III secretion system protein 233 390 5.2E-40 T 15-10-2018 IPR004846 Type II/III secretion system GO:0009306 NJ56_08865 bfc3033284ea6e092612e9c85e4ba932 438 PRINTS PR00811 Bacterial general secretion pathway protein D signature 355 373 5.6E-7 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_08865 bfc3033284ea6e092612e9c85e4ba932 438 PRINTS PR00811 Bacterial general secretion pathway protein D signature 184 194 5.6E-7 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_16965 a1dac14687564040ca45bafd06c8f84c 381 Pfam PF07690 Major Facilitator Superfamily 209 374 5.1E-13 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_16965 a1dac14687564040ca45bafd06c8f84c 381 Pfam PF07690 Major Facilitator Superfamily 11 178 1.0E-12 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_16965 a1dac14687564040ca45bafd06c8f84c 381 Gene3D G3DSA:1.20.1250.20 7 193 2.8E-18 T 15-10-2018 NJ56_16965 a1dac14687564040ca45bafd06c8f84c 381 SUPERFAMILY SSF103473 5 368 3.14E-43 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_16965 a1dac14687564040ca45bafd06c8f84c 381 Hamap MF_01149 Uncharacterized MFS-type transporter YcaD [ycaD]. 1 381 36.114 T 15-10-2018 IPR023745 MSF-type transporter, YcaD NJ56_16965 a1dac14687564040ca45bafd06c8f84c 381 Gene3D G3DSA:1.20.1250.20 195 376 1.5E-18 T 15-10-2018 NJ56_00495 62d3a4a9622680a3a585dc23e805a3b0 175 Pfam PF00258 Flavodoxin 6 160 1.4E-32 T 15-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 NJ56_00495 62d3a4a9622680a3a585dc23e805a3b0 175 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 15-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 NJ56_00495 62d3a4a9622680a3a585dc23e805a3b0 175 Gene3D G3DSA:3.40.50.360 2 175 1.0E-58 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_00495 62d3a4a9622680a3a585dc23e805a3b0 175 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 5.7E-77 T 15-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 NJ56_00495 62d3a4a9622680a3a585dc23e805a3b0 175 PIRSF PIRSF038996 1 172 1.3E-70 T 15-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 NJ56_00495 62d3a4a9622680a3a585dc23e805a3b0 175 SUPERFAMILY SSF52218 4 169 2.38E-53 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_01165 cda16d0bd1219bff59feea38e7041f70 320 SUPERFAMILY SSF53800 2 319 2.09E-101 T 15-10-2018 NJ56_01165 cda16d0bd1219bff59feea38e7041f70 320 Gene3D G3DSA:3.40.50.1400 6 319 2.6E-91 T 15-10-2018 NJ56_01165 cda16d0bd1219bff59feea38e7041f70 320 Gene3D G3DSA:3.40.50.1400 162 300 2.6E-91 T 15-10-2018 NJ56_01165 cda16d0bd1219bff59feea38e7041f70 320 Hamap MF_00323 Ferrochelatase [hemH]. 3 319 37.72 T 15-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 NJ56_01165 cda16d0bd1219bff59feea38e7041f70 320 TIGRFAM TIGR00109 hemH: ferrochelatase 2 318 5.0E-109 T 15-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 NJ56_01165 cda16d0bd1219bff59feea38e7041f70 320 Pfam PF00762 Ferrochelatase 5 318 7.8E-108 T 15-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 NJ56_01165 cda16d0bd1219bff59feea38e7041f70 320 ProSitePatterns PS00534 Ferrochelatase signature. 188 206 - T 15-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 NJ56_03375 917ab9d62293f4a7e91d148b9d84fecc 808 SUPERFAMILY SSF49863 695 806 1.29E-14 T 15-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 NJ56_03375 917ab9d62293f4a7e91d148b9d84fecc 808 Pfam PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain 49 380 3.6E-102 T 15-10-2018 IPR012970 Polysaccharide lyase 8, N-terminal alpha-helical NJ56_03375 917ab9d62293f4a7e91d148b9d84fecc 808 Pfam PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain 698 763 7.3E-7 T 15-10-2018 IPR004103 Polysaccharide lyase family 8, C-terminal GO:0005576|GO:0016829 NJ56_03375 917ab9d62293f4a7e91d148b9d84fecc 808 SUPERFAMILY SSF48230 41 414 1.98E-95 T 15-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 NJ56_03375 917ab9d62293f4a7e91d148b9d84fecc 808 Gene3D G3DSA:1.50.10.100 40 418 3.8E-117 T 15-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 NJ56_03375 917ab9d62293f4a7e91d148b9d84fecc 808 Gene3D G3DSA:2.70.98.10 426 686 1.4E-70 T 15-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 NJ56_03375 917ab9d62293f4a7e91d148b9d84fecc 808 Gene3D G3DSA:2.60.220.10 695 806 6.4E-15 T 15-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 NJ56_03375 917ab9d62293f4a7e91d148b9d84fecc 808 SUPERFAMILY SSF74650 420 703 1.62E-62 T 15-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 NJ56_03375 917ab9d62293f4a7e91d148b9d84fecc 808 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 424 684 5.3E-58 T 15-10-2018 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 NJ56_05565 0a50b3b51f820e4fc9d6e650eac6e59d 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-8 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05565 0a50b3b51f820e4fc9d6e650eac6e59d 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-8 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05565 0a50b3b51f820e4fc9d6e650eac6e59d 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-8 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05565 0a50b3b51f820e4fc9d6e650eac6e59d 305 Gene3D G3DSA:1.10.10.10 1 84 3.2E-28 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_05565 0a50b3b51f820e4fc9d6e650eac6e59d 305 Gene3D G3DSA:3.40.190.10 91 281 5.1E-76 T 15-10-2018 NJ56_05565 0a50b3b51f820e4fc9d6e650eac6e59d 305 SUPERFAMILY SSF46785 1 110 1.18E-21 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_05565 0a50b3b51f820e4fc9d6e650eac6e59d 305 SUPERFAMILY SSF53850 89 295 4.81E-46 T 15-10-2018 NJ56_05565 0a50b3b51f820e4fc9d6e650eac6e59d 305 Gene3D G3DSA:3.40.190.10 164 267 5.1E-76 T 15-10-2018 NJ56_05565 0a50b3b51f820e4fc9d6e650eac6e59d 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.6E-19 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05565 0a50b3b51f820e4fc9d6e650eac6e59d 305 Pfam PF03466 LysR substrate binding domain 88 293 5.3E-52 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_09560 3df08f8efc6faa0e5ab46f38d0ed8826 614 Gene3D G3DSA:3.40.50.300 485 601 3.5E-26 T 15-10-2018 NJ56_09560 3df08f8efc6faa0e5ab46f38d0ed8826 614 Gene3D G3DSA:3.40.50.300 370 483 4.6E-29 T 15-10-2018 NJ56_09560 3df08f8efc6faa0e5ab46f38d0ed8826 614 Pfam PF13604 AAA domain 161 320 1.2E-31 T 15-10-2018 NJ56_09560 3df08f8efc6faa0e5ab46f38d0ed8826 614 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 5 612 1.7E-192 T 15-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 NJ56_09560 3df08f8efc6faa0e5ab46f38d0ed8826 614 SUPERFAMILY SSF52540 5 365 7.48E-52 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09560 3df08f8efc6faa0e5ab46f38d0ed8826 614 SUPERFAMILY SSF52540 287 612 3.36E-62 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09560 3df08f8efc6faa0e5ab46f38d0ed8826 614 Gene3D G3DSA:3.40.50.300 115 360 1.2E-81 T 15-10-2018 NJ56_09560 3df08f8efc6faa0e5ab46f38d0ed8826 614 Gene3D G3DSA:1.10.10.1020 1 114 2.3E-35 T 15-10-2018 NJ56_09560 3df08f8efc6faa0e5ab46f38d0ed8826 614 Pfam PF13538 UvrD-like helicase C-terminal domain 541 587 1.7E-15 T 15-10-2018 IPR027785 UvrD-like helicase C-terminal domain NJ56_09560 3df08f8efc6faa0e5ab46f38d0ed8826 614 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 14 610 51.907 T 15-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 NJ56_01710 8b88ad71e1ff16bd25570a0daf627842 352 Pfam PF00817 impB/mucB/samB family 7 154 2.4E-49 T 15-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 NJ56_01710 8b88ad71e1ff16bd25570a0daf627842 352 Pfam PF11798 IMS family HHH motif 169 197 1.4E-8 T 15-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 NJ56_01710 8b88ad71e1ff16bd25570a0daf627842 352 SUPERFAMILY SSF56672 1 234 1.87E-92 T 15-10-2018 NJ56_01710 8b88ad71e1ff16bd25570a0daf627842 352 SUPERFAMILY SSF100879 241 350 9.22E-26 T 15-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 NJ56_01710 8b88ad71e1ff16bd25570a0daf627842 352 Hamap MF_01113 DNA polymerase IV [dinB]. 1 349 36.781 T 15-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 NJ56_01710 8b88ad71e1ff16bd25570a0daf627842 352 Pfam PF11799 impB/mucB/samB family C-terminal domain 235 346 8.3E-9 T 15-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 NJ56_01710 8b88ad71e1ff16bd25570a0daf627842 352 Gene3D G3DSA:3.30.70.270 4 164 2.5E-64 T 15-10-2018 NJ56_01710 8b88ad71e1ff16bd25570a0daf627842 352 Gene3D G3DSA:2.30.40.20 21 73 2.5E-64 T 15-10-2018 NJ56_01710 8b88ad71e1ff16bd25570a0daf627842 352 Gene3D G3DSA:1.10.150.20 166 228 1.6E-18 T 15-10-2018 NJ56_01710 8b88ad71e1ff16bd25570a0daf627842 352 Gene3D G3DSA:3.30.1490.100 237 351 5.0E-28 T 15-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 NJ56_09980 88119ea070794441120a7d3a6955a1e7 111 SUPERFAMILY SSF159894 1 111 4.71E-55 T 15-10-2018 NJ56_09980 88119ea070794441120a7d3a6955a1e7 111 Gene3D G3DSA:3.90.1150.40 1 111 2.0E-55 T 15-10-2018 NJ56_09980 88119ea070794441120a7d3a6955a1e7 111 Pfam PF09400 Protein of unknown function (DUF2002) 1 110 7.1E-57 T 15-10-2018 IPR018994 Protein of unknown function DUF2002 NJ56_13740 bf2cd73eb988e616877c9cb27d880251 70 PRINTS PR00050 Cold shock protein signature 43 61 1.6E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13740 bf2cd73eb988e616877c9cb27d880251 70 PRINTS PR00050 Cold shock protein signature 7 22 1.6E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13740 bf2cd73eb988e616877c9cb27d880251 70 PRINTS PR00050 Cold shock protein signature 28 37 1.6E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13740 bf2cd73eb988e616877c9cb27d880251 70 SMART SM00357 6 70 7.2E-31 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_13740 bf2cd73eb988e616877c9cb27d880251 70 PIRSF PIRSF002599 1 70 3.9E-24 T 15-10-2018 IPR012156 Cold shock, CspA GO:0003676 NJ56_13740 bf2cd73eb988e616877c9cb27d880251 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 1.1E-32 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13740 bf2cd73eb988e616877c9cb27d880251 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 15-10-2018 IPR019844 Cold-shock conserved site NJ56_13740 bf2cd73eb988e616877c9cb27d880251 70 SUPERFAMILY SSF50249 3 69 8.57E-25 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_13740 bf2cd73eb988e616877c9cb27d880251 70 Gene3D G3DSA:2.40.50.140 2 69 6.3E-29 T 15-10-2018 NJ56_13735 bf2cd73eb988e616877c9cb27d880251 70 PRINTS PR00050 Cold shock protein signature 43 61 1.6E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13735 bf2cd73eb988e616877c9cb27d880251 70 PRINTS PR00050 Cold shock protein signature 7 22 1.6E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13735 bf2cd73eb988e616877c9cb27d880251 70 PRINTS PR00050 Cold shock protein signature 28 37 1.6E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13735 bf2cd73eb988e616877c9cb27d880251 70 SMART SM00357 6 70 7.2E-31 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_13735 bf2cd73eb988e616877c9cb27d880251 70 PIRSF PIRSF002599 1 70 3.9E-24 T 15-10-2018 IPR012156 Cold shock, CspA GO:0003676 NJ56_13735 bf2cd73eb988e616877c9cb27d880251 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 1.1E-32 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13735 bf2cd73eb988e616877c9cb27d880251 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 15-10-2018 IPR019844 Cold-shock conserved site NJ56_13735 bf2cd73eb988e616877c9cb27d880251 70 SUPERFAMILY SSF50249 3 69 8.57E-25 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_13735 bf2cd73eb988e616877c9cb27d880251 70 Gene3D G3DSA:2.40.50.140 2 69 6.3E-29 T 15-10-2018 NJ56_13745 bf2cd73eb988e616877c9cb27d880251 70 PRINTS PR00050 Cold shock protein signature 43 61 1.6E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13745 bf2cd73eb988e616877c9cb27d880251 70 PRINTS PR00050 Cold shock protein signature 7 22 1.6E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13745 bf2cd73eb988e616877c9cb27d880251 70 PRINTS PR00050 Cold shock protein signature 28 37 1.6E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13745 bf2cd73eb988e616877c9cb27d880251 70 SMART SM00357 6 70 7.2E-31 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_13745 bf2cd73eb988e616877c9cb27d880251 70 PIRSF PIRSF002599 1 70 3.9E-24 T 15-10-2018 IPR012156 Cold shock, CspA GO:0003676 NJ56_13745 bf2cd73eb988e616877c9cb27d880251 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 1.1E-32 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_13745 bf2cd73eb988e616877c9cb27d880251 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 15-10-2018 IPR019844 Cold-shock conserved site NJ56_13745 bf2cd73eb988e616877c9cb27d880251 70 SUPERFAMILY SSF50249 3 69 8.57E-25 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_13745 bf2cd73eb988e616877c9cb27d880251 70 Gene3D G3DSA:2.40.50.140 2 69 6.3E-29 T 15-10-2018 NJ56_08995 3b0a549757db005ee2c5480273264aa4 321 Gene3D G3DSA:3.40.50.10490 2 193 1.7E-55 T 15-10-2018 NJ56_08995 3b0a549757db005ee2c5480273264aa4 321 Pfam PF00571 CBS domain 200 256 1.7E-4 T 15-10-2018 IPR000644 CBS domain NJ56_08995 3b0a549757db005ee2c5480273264aa4 321 Pfam PF00571 CBS domain 274 314 1.5E-5 T 15-10-2018 IPR000644 CBS domain NJ56_08995 3b0a549757db005ee2c5480273264aa4 321 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 43 311 1.0E-119 T 15-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 NJ56_08995 3b0a549757db005ee2c5480273264aa4 321 PIRSF PIRSF004692 1 321 5.6E-118 T 15-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 NJ56_08995 3b0a549757db005ee2c5480273264aa4 321 SMART SM00116 272 320 1.3 T 15-10-2018 IPR000644 CBS domain NJ56_08995 3b0a549757db005ee2c5480273264aa4 321 SMART SM00116 208 256 8.1 T 15-10-2018 IPR000644 CBS domain NJ56_08995 3b0a549757db005ee2c5480273264aa4 321 Pfam PF01380 SIS domain 39 169 3.6E-29 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_08995 3b0a549757db005ee2c5480273264aa4 321 Gene3D G3DSA:3.10.580.10 194 318 1.4E-32 T 15-10-2018 NJ56_08995 3b0a549757db005ee2c5480273264aa4 321 SUPERFAMILY SSF54631 261 317 2.79E-9 T 15-10-2018 NJ56_08995 3b0a549757db005ee2c5480273264aa4 321 SUPERFAMILY SSF53697 4 255 1.51E-53 T 15-10-2018 NJ56_18235 5d83c4c57f99b4f3d843831de6c645cb 1729 Gene3D G3DSA:3.40.50.300 926 1130 8.7E-29 T 15-10-2018 NJ56_18235 5d83c4c57f99b4f3d843831de6c645cb 1729 SUPERFAMILY SSF55464 1 295 3.2E-88 T 15-10-2018 NJ56_18235 5d83c4c57f99b4f3d843831de6c645cb 1729 Gene3D G3DSA:2.30.30.940 1313 1388 2.2E-6 T 15-10-2018 NJ56_18235 5d83c4c57f99b4f3d843831de6c645cb 1729 Gene3D G3DSA:3.40.50.300 1305 1442 2.2E-6 T 15-10-2018 NJ56_18235 5d83c4c57f99b4f3d843831de6c645cb 1729 Pfam PF07057 DNA helicase TraI 1425 1542 3.2E-43 T 15-10-2018 IPR009767 DNA helicase, TraI type GO:0000746|GO:0003677|GO:0003678|GO:0005524|GO:0016818 NJ56_18235 5d83c4c57f99b4f3d843831de6c645cb 1729 Pfam PF13604 AAA domain 958 1145 8.0E-36 T 15-10-2018 NJ56_18235 5d83c4c57f99b4f3d843831de6c645cb 1729 SUPERFAMILY SSF52540 1079 1444 9.03E-22 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_18235 5d83c4c57f99b4f3d843831de6c645cb 1729 TIGRFAM TIGR02760 TraI_TIGR: conjugative transfer relaxase protein TraI 1 1457 0.0 T 15-10-2018 IPR014129 Conjugative transfer relaxase protein TraI NJ56_18235 5d83c4c57f99b4f3d843831de6c645cb 1729 TIGRFAM TIGR02686 relax_trwC: conjugative relaxase domain 12 284 1.0E-93 T 15-10-2018 IPR014059 Conjugative relaxase, N-terminal NJ56_18235 5d83c4c57f99b4f3d843831de6c645cb 1729 Pfam PF08751 TrwC relaxase 12 280 5.0E-72 T 15-10-2018 IPR014862 TrwC relaxase NJ56_18235 5d83c4c57f99b4f3d843831de6c645cb 1729 SUPERFAMILY SSF52540 928 1100 6.29E-18 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17390 22238300bb89af1296611b6377506dfb 220 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 38 218 4.5E-85 T 15-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 NJ56_17390 22238300bb89af1296611b6377506dfb 220 SUPERFAMILY SSF55620 7 218 1.48E-74 T 15-10-2018 NJ56_17390 22238300bb89af1296611b6377506dfb 220 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 96 112 - T 15-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 NJ56_17390 22238300bb89af1296611b6377506dfb 220 Pfam PF01227 GTP cyclohydrolase I 38 216 2.0E-63 T 15-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 NJ56_17390 22238300bb89af1296611b6377506dfb 220 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 34 217 34.299 T 15-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 NJ56_17390 22238300bb89af1296611b6377506dfb 220 Gene3D G3DSA:3.30.1130.10 85 220 4.7E-54 T 15-10-2018 NJ56_17390 22238300bb89af1296611b6377506dfb 220 Gene3D G3DSA:1.10.286.10 1 84 1.8E-37 T 15-10-2018 NJ56_17390 22238300bb89af1296611b6377506dfb 220 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 144 154 - T 15-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 NJ56_12415 5322c8aebe3deb9a4be09eca865e531b 105 PIRSF PIRSF028773 1 105 1.2E-50 T 15-10-2018 IPR007458 Protein of unknown function DUF496 NJ56_12415 5322c8aebe3deb9a4be09eca865e531b 105 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 9 103 25.76 T 15-10-2018 IPR007458 Protein of unknown function DUF496 NJ56_12415 5322c8aebe3deb9a4be09eca865e531b 105 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 12 99 1.0E-42 T 15-10-2018 IPR007458 Protein of unknown function DUF496 NJ56_12415 5322c8aebe3deb9a4be09eca865e531b 105 Pfam PF04363 Protein of unknown function (DUF496) 9 100 6.6E-47 T 15-10-2018 IPR007458 Protein of unknown function DUF496 NJ56_08735 f221d6a65281bc9292307e4cdcf071b9 275 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 206 261 2.0E-24 T 15-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 NJ56_08735 f221d6a65281bc9292307e4cdcf071b9 275 Gene3D G3DSA:3.60.21.10 5 274 6.8E-70 T 15-10-2018 IPR029052 Metallo-dependent phosphatase-like NJ56_08735 f221d6a65281bc9292307e4cdcf071b9 275 Pfam PF00149 Calcineurin-like phosphoesterase 16 206 5.1E-20 T 15-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 NJ56_08735 f221d6a65281bc9292307e4cdcf071b9 275 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 15 261 39.101 T 15-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 NJ56_08735 f221d6a65281bc9292307e4cdcf071b9 275 SUPERFAMILY SSF56300 16 271 9.71E-60 T 15-10-2018 NJ56_09910 c235ccd0f04257e69fadc3785ef37821 512 Pfam PF07690 Major Facilitator Superfamily 18 412 2.8E-54 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_09910 c235ccd0f04257e69fadc3785ef37821 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 138 162 6.4E-5 T 15-10-2018 NJ56_09910 c235ccd0f04257e69fadc3785ef37821 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 204 222 6.4E-5 T 15-10-2018 NJ56_09910 c235ccd0f04257e69fadc3785ef37821 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 108 128 6.4E-5 T 15-10-2018 NJ56_09910 c235ccd0f04257e69fadc3785ef37821 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 6.4E-5 T 15-10-2018 NJ56_09910 c235ccd0f04257e69fadc3785ef37821 512 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 497 3.2E-211 T 15-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 NJ56_09910 c235ccd0f04257e69fadc3785ef37821 512 Gene3D G3DSA:1.20.1720.10 14 210 2.7E-48 T 15-10-2018 NJ56_09910 c235ccd0f04257e69fadc3785ef37821 512 SUPERFAMILY SSF103473 5 499 2.75E-74 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_07400 8ce505b1ed17dfaa41c34a5c027fc8d1 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 81 92 - T 15-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07400 8ce505b1ed17dfaa41c34a5c027fc8d1 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 15-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07400 8ce505b1ed17dfaa41c34a5c027fc8d1 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 1.8E-47 T 15-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 NJ56_07400 8ce505b1ed17dfaa41c34a5c027fc8d1 136 Gene3D G3DSA:3.90.1170.10 1 136 3.0E-55 T 15-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 NJ56_07400 8ce505b1ed17dfaa41c34a5c027fc8d1 136 SUPERFAMILY SSF54686 3 133 6.28E-55 T 15-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 NJ56_07400 8ce505b1ed17dfaa41c34a5c027fc8d1 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 37.726 T 15-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07400 8ce505b1ed17dfaa41c34a5c027fc8d1 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 3.1E-40 T 15-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07400 8ce505b1ed17dfaa41c34a5c027fc8d1 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 3.1E-40 T 15-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07400 8ce505b1ed17dfaa41c34a5c027fc8d1 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 3.1E-40 T 15-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07400 8ce505b1ed17dfaa41c34a5c027fc8d1 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 3.1E-40 T 15-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07400 8ce505b1ed17dfaa41c34a5c027fc8d1 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 1.6E-59 T 15-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_17215 65dd9737aa4bbb7694f39b763a323d08 345 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 10 133 1.4E-35 T 15-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain NJ56_17215 65dd9737aa4bbb7694f39b763a323d08 345 SUPERFAMILY SSF51197 6 289 4.19E-82 T 15-10-2018 NJ56_17215 65dd9737aa4bbb7694f39b763a323d08 345 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 182 278 1.1E-19 T 15-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 NJ56_17215 65dd9737aa4bbb7694f39b763a323d08 345 Gene3D G3DSA:2.60.120.330 3 309 1.8E-83 T 15-10-2018 IPR027443 Isopenicillin N synthase-like NJ56_17215 65dd9737aa4bbb7694f39b763a323d08 345 PRINTS PR00682 Isopenicillin N synthase signature 203 224 5.4E-13 T 15-10-2018 NJ56_17215 65dd9737aa4bbb7694f39b763a323d08 345 PRINTS PR00682 Isopenicillin N synthase signature 32 49 5.4E-13 T 15-10-2018 NJ56_17215 65dd9737aa4bbb7694f39b763a323d08 345 PRINTS PR00682 Isopenicillin N synthase signature 239 265 5.4E-13 T 15-10-2018 NJ56_09600 23426a86134427a2b1aa8f59cd1c7fdd 146 SUPERFAMILY SSF82649 3 142 4.36E-44 T 15-10-2018 NJ56_09600 23426a86134427a2b1aa8f59cd1c7fdd 146 Gene3D G3DSA:3.90.1010.10 1 143 1.2E-46 T 15-10-2018 NJ56_09600 23426a86134427a2b1aa8f59cd1c7fdd 146 Pfam PF02657 Fe-S metabolism associated domain 20 138 3.8E-37 T 15-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like NJ56_09600 23426a86134427a2b1aa8f59cd1c7fdd 146 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 3 141 6.6E-71 T 15-10-2018 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE NJ56_03985 3c4b40349a011739bc3e86153a2e330b 150 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 25.385 T 15-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_03985 3c4b40349a011739bc3e86153a2e330b 150 Gene3D G3DSA:3.40.5.10 1 50 8.9E-25 T 15-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03985 3c4b40349a011739bc3e86153a2e330b 150 SUPERFAMILY SSF55653 60 149 9.68E-26 T 15-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily NJ56_03985 3c4b40349a011739bc3e86153a2e330b 150 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 5.5E-22 T 15-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03985 3c4b40349a011739bc3e86153a2e330b 150 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 148 3.6E-25 T 15-10-2018 IPR020069 Ribosomal protein L9, C-terminal NJ56_03985 3c4b40349a011739bc3e86153a2e330b 150 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 15-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03985 3c4b40349a011739bc3e86153a2e330b 150 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 5.5E-58 T 15-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_03985 3c4b40349a011739bc3e86153a2e330b 150 Gene3D G3DSA:3.10.430.100 61 149 3.7E-31 T 15-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily NJ56_03985 3c4b40349a011739bc3e86153a2e330b 150 SUPERFAMILY SSF55658 1 57 4.88E-19 T 15-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 Pfam PF00708 Acylphosphatase 7 89 1.0E-16 T 15-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 8 754 1.8E-249 T 15-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 Pfam PF01300 Telomere recombination 210 386 5.2E-48 T 15-10-2018 IPR006070 YrdC-like domain GO:0003725 NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 SUPERFAMILY SSF55821 174 391 1.83E-46 T 15-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 SUPERFAMILY SSF54975 5 90 3.05E-18 T 15-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 Gene3D G3DSA:3.90.870.50 8 364 8.6E-142 T 15-10-2018 NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 Pfam PF07503 HypF finger 107 140 3.0E-15 T 15-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 Pfam PF07503 HypF finger 157 188 2.5E-16 T 15-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 PIRSF PIRSF006256 1 763 1.2E-266 T 15-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 Gene3D G3DSA:3.30.420.350 487 742 3.1E-118 T 15-10-2018 NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 Gene3D G3DSA:3.30.420.360 385 754 3.1E-118 T 15-10-2018 NJ56_16160 f84a13cb3b5c85b98748e94fb0b365ab 775 Gene3D G3DSA:3.30.110.120 253 373 8.6E-142 T 15-10-2018 NJ56_02205 e526dfb49c7e07814869b723ebb922b1 558 Gene3D G3DSA:3.55.50.30 23 102 2.7E-27 T 15-10-2018 NJ56_02205 e526dfb49c7e07814869b723ebb922b1 558 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 253 515 1.3E-84 T 15-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 NJ56_02205 e526dfb49c7e07814869b723ebb922b1 558 Pfam PF00263 Bacterial type II and III secretion system protein 355 514 4.2E-36 T 15-10-2018 IPR004846 Type II/III secretion system GO:0009306 NJ56_02205 e526dfb49c7e07814869b723ebb922b1 558 Gene3D G3DSA:3.30.1370.120 103 175 3.5E-24 T 15-10-2018 IPR038591 NolW-like superfamily NJ56_02205 e526dfb49c7e07814869b723ebb922b1 558 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 191 208 1.4E-33 T 15-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 NJ56_02205 e526dfb49c7e07814869b723ebb922b1 558 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 367 386 1.4E-33 T 15-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 NJ56_02205 e526dfb49c7e07814869b723ebb922b1 558 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 303 323 1.4E-33 T 15-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 NJ56_02205 e526dfb49c7e07814869b723ebb922b1 558 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 401 416 1.4E-33 T 15-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 NJ56_02205 e526dfb49c7e07814869b723ebb922b1 558 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 493 512 1.4E-33 T 15-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 NJ56_02205 e526dfb49c7e07814869b723ebb922b1 558 Pfam PF03958 Bacterial type II/III secretion system short domain 179 301 1.5E-13 T 15-10-2018 IPR005644 NolW-like NJ56_09855 2ce191feeef12296fb418ad4b6f99ae4 188 Pfam PF13242 HAD-hyrolase-like 109 178 7.6E-11 T 15-10-2018 NJ56_09855 2ce191feeef12296fb418ad4b6f99ae4 188 SUPERFAMILY SSF56784 3 183 1.04E-50 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_09855 2ce191feeef12296fb418ad4b6f99ae4 188 PIRSF PIRSF004682 1 188 4.0E-63 T 15-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 NJ56_09855 2ce191feeef12296fb418ad4b6f99ae4 188 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 7 154 2.0E-37 T 15-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 NJ56_09855 2ce191feeef12296fb418ad4b6f99ae4 188 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 6 181 1.1E-91 T 15-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 NJ56_09855 2ce191feeef12296fb418ad4b6f99ae4 188 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 153 1.3E-38 T 15-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 NJ56_09855 2ce191feeef12296fb418ad4b6f99ae4 188 Gene3D G3DSA:3.40.50.1000 4 188 2.0E-63 T 15-10-2018 IPR023214 HAD superfamily NJ56_01535 06967fdb1b13b8033cd14e716f997e30 615 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 615 48.859 T 15-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 NJ56_01535 06967fdb1b13b8033cd14e716f997e30 615 Pfam PF02355 Protein export membrane protein 433 601 2.7E-16 T 15-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial NJ56_01535 06967fdb1b13b8033cd14e716f997e30 615 Pfam PF07549 SecD/SecF GG Motif 120 140 5.1E-6 T 15-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site NJ56_01535 06967fdb1b13b8033cd14e716f997e30 615 Gene3D G3DSA:3.30.1360.200 278 431 1.5E-49 T 15-10-2018 NJ56_01535 06967fdb1b13b8033cd14e716f997e30 615 Gene3D G3DSA:3.30.70.3400 222 437 1.5E-49 T 15-10-2018 NJ56_01535 06967fdb1b13b8033cd14e716f997e30 615 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 345 594 3.1E-84 T 15-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NJ56_01535 06967fdb1b13b8033cd14e716f997e30 615 SUPERFAMILY SSF82866 410 606 2.09E-41 T 15-10-2018 NJ56_01535 06967fdb1b13b8033cd14e716f997e30 615 Pfam PF13721 SecD export protein N-terminal TM region 2 103 1.6E-37 T 15-10-2018 IPR027398 SecD export protein N-terminal TM domain NJ56_01535 06967fdb1b13b8033cd14e716f997e30 615 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 601 1.0E-150 T 15-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 678 691 8.8E-16 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 633 8.8E-16 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 647 8.8E-16 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 672 8.8E-16 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 Pfam PF09456 RcsC Alpha-Beta-Loop (ABL) 711 800 2.9E-29 T 15-10-2018 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal GO:0000160|GO:0004673|GO:0005524|GO:0005886|GO:0006355|GO:0016021|GO:0018106 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 SMART SM00388 471 536 5.1E-20 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 Pfam PF00072 Response regulator receiver domain 828 937 2.7E-30 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 Gene3D G3DSA:3.40.50.10970 709 819 6.9E-15 T 15-10-2018 IPR038388 RcsC, C-terminal domain superfamily NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 Gene3D G3DSA:3.40.50.2300 820 948 1.2E-39 T 15-10-2018 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 SUPERFAMILY SSF52172 705 802 1.59E-32 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 Hamap MF_00979 Sensor histidine kinase RcsC [rcsC]. 24 942 27.404 T 15-10-2018 IPR030856 Sensor histidine kinase RcsC GO:0000155|GO:0000160|GO:0016021 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 Gene3D G3DSA:1.10.287.130 448 534 3.1E-23 T 15-10-2018 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 Gene3D G3DSA:3.30.565.10 537 695 2.2E-43 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 SUPERFAMILY SSF52172 824 945 4.27E-39 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 SUPERFAMILY SSF47384 455 537 1.37E-19 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 SMART SM00448 826 937 4.2E-37 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 Pfam PF00512 His Kinase A (phospho-acceptor) domain 471 535 1.6E-16 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 SUPERFAMILY SSF55874 525 693 2.23E-46 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 SMART SM00387 583 694 5.5E-37 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_11845 577ebe1c3fa7dce7a5ee3dcf9d17a704 948 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 583 693 9.2E-28 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_08245 c81189279618a76fb631dac79fea8a5a 375 Hamap MF_01919 Cell division protein ZapE [zapE]. 4 375 53.355 T 15-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 NJ56_08245 c81189279618a76fb631dac79fea8a5a 375 Pfam PF03969 AFG1-like ATPase 5 370 1.4E-145 T 15-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 NJ56_08245 c81189279618a76fb631dac79fea8a5a 375 SUPERFAMILY SSF52540 67 198 2.13E-13 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_08245 c81189279618a76fb631dac79fea8a5a 375 Gene3D G3DSA:3.40.50.300 52 199 8.7E-20 T 15-10-2018 NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 Gene3D G3DSA:1.10.3210.10 32 207 2.4E-39 T 15-10-2018 NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 Pfam PF13291 ACT domain 664 740 2.5E-17 T 15-10-2018 IPR002912 ACT domain NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 Gene3D G3DSA:3.10.20.30 399 471 6.3E-33 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 SUPERFAMILY SSF81271 398 464 3.92E-22 T 15-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 SUPERFAMILY SSF81301 196 409 2.13E-64 T 15-10-2018 NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 Gene3D G3DSA:3.30.70.260 663 743 4.2E-18 T 15-10-2018 NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 SMART SM00954 251 361 3.5E-66 T 15-10-2018 IPR007685 RelA/SpoT GO:0015969 NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 Pfam PF02824 TGS domain 405 464 7.5E-21 T 15-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 Gene3D G3DSA:3.30.460.10 209 341 3.5E-50 T 15-10-2018 NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 Pfam PF13328 HD domain 50 191 2.8E-41 T 15-10-2018 IPR003607 HD/PDEase domain NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 Pfam PF04607 Region found in RelA / SpoT proteins 251 360 2.3E-36 T 15-10-2018 IPR007685 RelA/SpoT GO:0015969 NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 63 739 4.2E-188 T 15-10-2018 IPR004811 RelA/SpoT family GO:0015969 NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 SUPERFAMILY SSF109604 26 207 1.66E-46 T 15-10-2018 NJ56_02405 c6ebd7f8b4f4f79504daa4cf9f432d8c 744 SUPERFAMILY SSF55021 665 741 1.89E-13 T 15-10-2018 NJ56_00815 cf1bbc3303076edae6334f59d8733e3a 115 SUPERFAMILY SSF52091 1 107 2.16E-21 T 15-10-2018 IPR036513 STAS domain superfamily NJ56_00815 cf1bbc3303076edae6334f59d8733e3a 115 Pfam PF01740 STAS domain 3 99 1.5E-12 T 15-10-2018 IPR002645 STAS domain NJ56_00815 cf1bbc3303076edae6334f59d8733e3a 115 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 101 2.4E-17 T 15-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 NJ56_00815 cf1bbc3303076edae6334f59d8733e3a 115 Gene3D G3DSA:3.30.750.24 1 115 5.0E-28 T 15-10-2018 IPR036513 STAS domain superfamily NJ56_07615 82650f2f71f5863892ea122bb70b7e87 575 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 1 570 43.845 T 15-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 NJ56_07615 82650f2f71f5863892ea122bb70b7e87 575 PIRSF PIRSF000719 1 575 2.4E-290 T 15-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 NJ56_07615 82650f2f71f5863892ea122bb70b7e87 575 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 9 566 6.4E-252 T 15-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 NJ56_07615 82650f2f71f5863892ea122bb70b7e87 575 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 7 572 0.0 T 15-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 NJ56_16210 73148dd28b50ae34649f796e9e57cd77 359 SUPERFAMILY SSF53187 1 322 1.59E-81 T 15-10-2018 NJ56_16210 73148dd28b50ae34649f796e9e57cd77 359 PIRSF PIRSF017020 1 329 6.4E-115 T 15-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 NJ56_16210 73148dd28b50ae34649f796e9e57cd77 359 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 45 323 3.8E-60 T 15-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 NJ56_16210 73148dd28b50ae34649f796e9e57cd77 359 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 335 138.281 T 15-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 NJ56_16210 73148dd28b50ae34649f796e9e57cd77 359 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 3 321 5.5E-132 T 15-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 NJ56_16210 73148dd28b50ae34649f796e9e57cd77 359 Gene3D G3DSA:3.40.630.10 1 333 3.6E-108 T 15-10-2018 NJ56_03010 6db7103059f7828ebd954e39605189dd 832 Gene3D G3DSA:2.60.20.10 5 108 1.7E-17 T 15-10-2018 NJ56_03010 6db7103059f7828ebd954e39605189dd 832 Gene3D G3DSA:2.60.20.10 109 206 1.0E-18 T 15-10-2018 NJ56_03010 6db7103059f7828ebd954e39605189dd 832 SUPERFAMILY SSF49695 103 204 3.42E-12 T 15-10-2018 IPR011024 Gamma-crystallin-like NJ56_03010 6db7103059f7828ebd954e39605189dd 832 Gene3D G3DSA:3.40.630.30 710 832 3.5E-6 T 15-10-2018 NJ56_03010 6db7103059f7828ebd954e39605189dd 832 SUPERFAMILY SSF55729 731 829 4.58E-7 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_03010 6db7103059f7828ebd954e39605189dd 832 SUPERFAMILY SSF49695 17 88 1.1E-9 T 15-10-2018 IPR011024 Gamma-crystallin-like NJ56_08565 ecdf7d38a7397cfb53ccbe8eb918f890 139 Pfam PF14567 SMI1-KNR4 cell-wall 7 135 2.0E-32 T 15-10-2018 NJ56_08565 ecdf7d38a7397cfb53ccbe8eb918f890 139 SMART SM00860 25 133 1.1E-4 T 15-10-2018 IPR018958 Knr4/Smi1-like domain NJ56_08565 ecdf7d38a7397cfb53ccbe8eb918f890 139 Gene3D G3DSA:3.40.1580.10 5 138 5.3E-37 T 15-10-2018 IPR037883 Knr4/Smi1-like domain superfamily NJ56_08565 ecdf7d38a7397cfb53ccbe8eb918f890 139 SUPERFAMILY SSF160631 6 137 3.27E-34 T 15-10-2018 NJ56_02685 b0d9c0414ab07846017448a10199dd1f 306 Gene3D G3DSA:3.30.1700.10 129 306 2.6E-75 T 15-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 NJ56_02685 b0d9c0414ab07846017448a10199dd1f 306 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 301 2.1E-159 T 15-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 NJ56_02685 b0d9c0414ab07846017448a10199dd1f 306 SUPERFAMILY SSF54211 135 278 6.9E-54 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_02685 b0d9c0414ab07846017448a10199dd1f 306 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 276 5.5E-108 T 15-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 NJ56_02685 b0d9c0414ab07846017448a10199dd1f 306 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 280 46.027 T 15-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 NJ56_02685 b0d9c0414ab07846017448a10199dd1f 306 Gene3D G3DSA:3.30.230.20 1 128 6.7E-52 T 15-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 NJ56_02685 b0d9c0414ab07846017448a10199dd1f 306 SUPERFAMILY SSF54211 3 124 1.29E-41 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_12210 df4206d28e4e163565960582ca216123 585 Pfam PF04851 Type III restriction enzyme, res subunit 3 155 9.9E-26 T 15-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 NJ56_12210 df4206d28e4e163565960582ca216123 585 SUPERFAMILY SSF57829 422 466 1.34E-8 T 15-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 NJ56_12210 df4206d28e4e163565960582ca216123 585 Gene3D G3DSA:3.40.50.300 1 169 4.8E-29 T 15-10-2018 NJ56_12210 df4206d28e4e163565960582ca216123 585 SUPERFAMILY SSF52540 50 358 2.27E-35 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_12210 df4206d28e4e163565960582ca216123 585 SMART SM00487 1 185 3.0E-16 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_12210 df4206d28e4e163565960582ca216123 585 Pfam PF00271 Helicase conserved C-terminal domain 241 343 7.9E-12 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_12210 df4206d28e4e163565960582ca216123 585 SMART SM00490 266 345 1.6E-8 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_12210 df4206d28e4e163565960582ca216123 585 Gene3D G3DSA:3.40.50.300 186 378 2.3E-32 T 15-10-2018 NJ56_12210 df4206d28e4e163565960582ca216123 585 Gene3D G3DSA:2.20.28.70 417 455 1.4E-5 T 15-10-2018 IPR038587 Ribosomal protein L40e superfamily Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-1169091|Reactome: R-HSA-1169408|Reactome: R-HSA-1234176|Reactome: R-HSA-1236382|Reactome: R-HSA-1236974|Reactome: R-HSA-1253288|Reactome: R-HSA-1295596|Reactome: R-HSA-1358803|Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-162588|Reactome: R-HSA-168638|Reactome: R-HSA-168927|Reactome: R-HSA-168928|Reactome: R-HSA-174048|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-174490|Reactome: R-HSA-175474|Reactome: R-HSA-179409|Reactome: R-HSA-1799339|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-182971|Reactome: R-HSA-187577|Reactome: R-HSA-192823|Reactome: R-HSA-195253|Reactome: R-HSA-201681|Reactome: R-HSA-202424|Reactome: R-HSA-205043|Reactome: R-HSA-209543|Reactome: R-HSA-209560|Reactome: R-HSA-211733|Reactome: R-HSA-2122947|Reactome: R-HSA-2122948|Reactome: R-HSA-2173788|Reactome: R-HSA-2173791|Reactome: R-HSA-2173795|Reactome: R-HSA-2173796|Reactome: R-HSA-2408557|Reactome: R-HSA-2467813|Reactome: R-HSA-2559580|Reactome: R-HSA-2559582|Reactome: R-HSA-2559585|Reactome: R-HSA-2565942|Reactome: R-HSA-2644606|Reactome: R-HSA-2672351|Reactome: R-HSA-2691232|Reactome: R-HSA-2871837|Reactome: R-HSA-2894862|Reactome: R-HSA-2979096|Reactome: R-HSA-3134975|Reactome: R-HSA-3322077|Reactome: R-HSA-349425|Reactome: R-HSA-3769402|Reactome: R-HSA-3785653|Reactome: R-HSA-382556|Reactome: R-HSA-400253|Reactome: R-HSA-445989|Reactome: R-HSA-450302|Reactome: R-HSA-450321|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-4641263|Reactome: R-HSA-5205685|Reactome: R-HSA-532668|Reactome: R-HSA-5357905|Reactome: R-HSA-5357956|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5654726|Reactome: R-HSA-5654727|Reactome: R-HSA-5654732|Reactome: R-HSA-5654733|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5675221|Reactome: R-HSA-5675482|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5684264|Reactome: R-HSA-5685942|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689877|Reactome: R-HSA-5689880|Reactome: R-HSA-5689896|Reactome: R-HSA-5689901|Reactome: R-HSA-5693565|Reactome: R-HSA-5693607|Reactome: R-HSA-5696394|Reactome: R-HSA-5696395|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6783310|Reactome: R-HSA-6791226|Reactome: R-HSA-6804756|Reactome: R-HSA-6804757|Reactome: R-HSA-6804760|Reactome: R-HSA-6807004|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69231|Reactome: R-HSA-69481|Reactome: R-HSA-69541|Reactome: R-HSA-69601|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-8849469|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8856825|Reactome: R-HSA-8856828|Reactome: R-HSA-8863795|Reactome: R-HSA-8866652|Reactome: R-HSA-8866654|Reactome: R-HSA-8875360|Reactome: R-HSA-8876493|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948747|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-901032|Reactome: R-HSA-9010553|Reactome: R-HSA-9013507|Reactome: R-HSA-9013973|Reactome: R-HSA-9014325|Reactome: R-HSA-9020702|Reactome: R-HSA-9033241|Reactome: R-HSA-912631|Reactome: R-HSA-917729|Reactome: R-HSA-917937|Reactome: R-HSA-936440|Reactome: R-HSA-936964|Reactome: R-HSA-937039|Reactome: R-HSA-937041|Reactome: R-HSA-937042|Reactome: R-HSA-937072|Reactome: R-HSA-9604323|Reactome: R-HSA-975110|Reactome: R-HSA-975144|Reactome: R-HSA-975163|Reactome: R-HSA-975956|Reactome: R-HSA-975957|Reactome: R-HSA-977225|Reactome: R-HSA-983168 NJ56_17180 46fc55bc1678336d933f1f507540ecdc 223 SUPERFAMILY SSF51569 3 216 5.44E-78 T 15-10-2018 NJ56_17180 46fc55bc1678336d933f1f507540ecdc 223 Pfam PF01791 DeoC/LacD family aldolase 8 212 1.5E-18 T 15-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 NJ56_17180 46fc55bc1678336d933f1f507540ecdc 223 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 5 213 1.1E-82 T 15-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 NJ56_17180 46fc55bc1678336d933f1f507540ecdc 223 Gene3D G3DSA:3.20.20.70 1 221 3.1E-91 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_17180 46fc55bc1678336d933f1f507540ecdc 223 PIRSF PIRSF001357 2 222 8.2E-73 T 15-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 NJ56_17180 46fc55bc1678336d933f1f507540ecdc 223 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 3 217 34.392 T 15-10-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 NJ56_17180 46fc55bc1678336d933f1f507540ecdc 223 SMART SM01133 4 215 1.9E-92 T 15-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 NJ56_09365 fbe1ac8c674e17864e97b04b661601c8 211 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 41 201 1.3E-23 T 15-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component NJ56_09365 fbe1ac8c674e17864e97b04b661601c8 211 SUPERFAMILY SSF159594 39 209 2.09E-43 T 15-10-2018 NJ56_09365 fbe1ac8c674e17864e97b04b661601c8 211 Gene3D G3DSA:3.40.50.10610 30 211 4.4E-54 T 15-10-2018 NJ56_05465 e7f9cf00dd65fb460ea6d9f7bff80671 85 Gene3D G3DSA:3.30.70.260 1 84 1.7E-8 T 15-10-2018 NJ56_05465 e7f9cf00dd65fb460ea6d9f7bff80671 85 Pfam PF13710 ACT domain 13 73 9.2E-26 T 15-10-2018 NJ56_05465 e7f9cf00dd65fb460ea6d9f7bff80671 85 SUPERFAMILY SSF55021 3 75 4.38E-12 T 15-10-2018 NJ56_07755 021e984e20a94f9987a40c7510b626f9 402 Pfam PF00872 Transposase, Mutator family 12 377 1.0E-113 T 15-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 NJ56_07755 021e984e20a94f9987a40c7510b626f9 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 15-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 Gene3D G3DSA:1.10.1390.10 511 548 2.6E-20 T 15-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 265 278 - T 15-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 497 514 - T 15-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 497 510 1.2E-54 T 15-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 465 483 1.2E-54 T 15-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 1.2E-54 T 15-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 483 497 1.2E-54 T 15-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 261 279 1.2E-54 T 15-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 338 359 1.2E-54 T 15-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 524 42.544 T 15-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 Gene3D G3DSA:3.40.50.10490 11 510 4.0E-241 T 15-10-2018 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 Pfam PF00342 Phosphoglucose isomerase 52 541 6.4E-255 T 15-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 Gene3D G3DSA:3.40.50.10490 98 291 4.0E-241 T 15-10-2018 NJ56_07775 af8b38390cae5ee1d36b070bf151fa5d 548 SUPERFAMILY SSF53697 5 547 1.86E-226 T 15-10-2018 NJ56_10565 02f484fbb54d53dedda601914a441f21 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 66 3.5E-32 T 15-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 NJ56_10565 02f484fbb54d53dedda601914a441f21 66 SUPERFAMILY SSF140319 3 64 2.35E-26 T 15-10-2018 IPR036762 IscX-like superfamily NJ56_10565 02f484fbb54d53dedda601914a441f21 66 Gene3D G3DSA:1.10.10.600 1 66 1.5E-30 T 15-10-2018 IPR036762 IscX-like superfamily NJ56_10565 02f484fbb54d53dedda601914a441f21 66 Pfam PF04384 Iron-sulphur cluster assembly 3 66 1.7E-31 T 15-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 NJ56_10565 02f484fbb54d53dedda601914a441f21 66 PIRSF PIRSF039003 3 66 7.4E-32 T 15-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 NJ56_08935 564aa5ebc5f40b6c86191623f3e254cd 422 Pfam PF07690 Major Facilitator Superfamily 22 365 1.2E-28 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_08935 564aa5ebc5f40b6c86191623f3e254cd 422 Gene3D G3DSA:1.20.1250.20 14 402 2.1E-37 T 15-10-2018 NJ56_08935 564aa5ebc5f40b6c86191623f3e254cd 422 SUPERFAMILY SSF103473 15 405 5.75E-42 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_16380 496babdfea26f7f03737a490d88d652c 208 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 206 36.185 T 15-10-2018 IPR007451 High frequency lysogenization protein HflD NJ56_16380 496babdfea26f7f03737a490d88d652c 208 SUPERFAMILY SSF101322 2 207 1.02E-80 T 15-10-2018 IPR035932 HflD-like superfamily NJ56_16380 496babdfea26f7f03737a490d88d652c 208 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 197 3.0E-87 T 15-10-2018 NJ56_16380 496babdfea26f7f03737a490d88d652c 208 Gene3D G3DSA:1.10.3890.10 1 208 2.1E-78 T 15-10-2018 IPR035932 HflD-like superfamily NJ56_16380 496babdfea26f7f03737a490d88d652c 208 Pfam PF04356 Protein of unknown function (DUF489) 7 198 3.9E-76 T 15-10-2018 IPR007451 High frequency lysogenization protein HflD NJ56_11255 e91e619e49833ed787125245ce347409 287 Pfam PF03466 LysR substrate binding domain 91 285 3.3E-25 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_11255 e91e619e49833ed787125245ce347409 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.6E-15 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_11255 e91e619e49833ed787125245ce347409 287 SUPERFAMILY SSF46785 6 81 2.96E-17 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_11255 e91e619e49833ed787125245ce347409 287 Gene3D G3DSA:3.40.190.290 94 265 3.6E-19 T 15-10-2018 NJ56_11255 e91e619e49833ed787125245ce347409 287 SUPERFAMILY SSF53850 91 284 3.26E-29 T 15-10-2018 NJ56_11255 e91e619e49833ed787125245ce347409 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.8E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_11255 e91e619e49833ed787125245ce347409 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.8E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_11255 e91e619e49833ed787125245ce347409 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.8E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_11255 e91e619e49833ed787125245ce347409 287 Gene3D G3DSA:1.10.10.10 1 85 1.5E-20 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_05155 5d33646aead4807a14714ee959122be9 174 Pfam PF08786 DcrB 41 170 8.9E-24 T 15-10-2018 IPR014894 Protein DcrB NJ56_05155 5d33646aead4807a14714ee959122be9 174 Gene3D G3DSA:3.40.1000.10 37 174 6.8E-8 T 15-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich NJ56_07070 e5148d1c9a8ef144363e604ebb21eaee 851 Pfam PF00905 Penicillin binding protein transpeptidase domain 428 600 3.7E-24 T 15-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 NJ56_07070 e5148d1c9a8ef144363e604ebb21eaee 851 Pfam PF17092 Penicillin-binding protein OB-like domain 316 425 2.0E-30 T 15-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_07070 e5148d1c9a8ef144363e604ebb21eaee 851 SUPERFAMILY SSF53955 43 257 7.59E-81 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_07070 e5148d1c9a8ef144363e604ebb21eaee 851 Gene3D G3DSA:3.40.710.10 243 343 1.3E-10 T 15-10-2018 NJ56_07070 e5148d1c9a8ef144363e604ebb21eaee 851 Gene3D G3DSA:3.40.710.10 644 835 1.7E-23 T 15-10-2018 NJ56_07070 e5148d1c9a8ef144363e604ebb21eaee 851 Gene3D G3DSA:3.40.710.10 398 627 1.2E-66 T 15-10-2018 NJ56_07070 e5148d1c9a8ef144363e604ebb21eaee 851 Gene3D G3DSA:1.10.3810.10 49 242 1.8E-80 T 15-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_07070 e5148d1c9a8ef144363e604ebb21eaee 851 SUPERFAMILY SSF56601 211 833 6.39E-113 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_07070 e5148d1c9a8ef144363e604ebb21eaee 851 Pfam PF00912 Transglycosylase 55 229 1.7E-65 T 15-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_07070 e5148d1c9a8ef144363e604ebb21eaee 851 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 784 1.3E-172 T 15-10-2018 NJ56_11910 00e67265d455fe467692f02fe7a63f54 392 SUPERFAMILY SSF56349 96 377 1.06E-30 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_11910 00e67265d455fe467692f02fe7a63f54 392 Gene3D G3DSA:1.10.443.10 184 385 4.1E-20 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_11910 00e67265d455fe467692f02fe7a63f54 392 Gene3D G3DSA:3.30.160.60 2 63 2.8E-8 T 15-10-2018 NJ56_11910 00e67265d455fe467692f02fe7a63f54 392 Gene3D G3DSA:1.10.150.130 75 182 3.2E-8 T 15-10-2018 IPR010998 Integrase/recombinase, N-terminal NJ56_11910 00e67265d455fe467692f02fe7a63f54 392 Pfam PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain 1 61 2.4E-6 T 15-10-2018 IPR015094 Integrase, lambda-type, N-terminal DNA-binding GO:0003677|GO:0008907|GO:0015074 NJ56_02055 442cdff2496d195c02e118afccc50ddf 155 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 14 36 6.3E-8 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_02055 442cdff2496d195c02e118afccc50ddf 155 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 16 146 2.2E-54 T 15-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 NJ56_02055 442cdff2496d195c02e118afccc50ddf 155 PRINTS PR00813 Bacterial general secretion pathway protein G signature 16 41 4.8E-22 T 15-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 NJ56_02055 442cdff2496d195c02e118afccc50ddf 155 PRINTS PR00813 Bacterial general secretion pathway protein G signature 52 70 4.8E-22 T 15-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 NJ56_02055 442cdff2496d195c02e118afccc50ddf 155 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 15 35 - T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_02055 442cdff2496d195c02e118afccc50ddf 155 SUPERFAMILY SSF54523 42 145 2.98E-37 T 15-10-2018 NJ56_02055 442cdff2496d195c02e118afccc50ddf 155 Gene3D G3DSA:3.30.700.10 30 145 1.1E-37 T 15-10-2018 NJ56_02055 442cdff2496d195c02e118afccc50ddf 155 Pfam PF08334 Type II secretion system (T2SS), protein G 40 145 1.1E-35 T 15-10-2018 IPR013545 Type II secretion system protein G NJ56_02055 442cdff2496d195c02e118afccc50ddf 155 Pfam PF07963 Prokaryotic N-terminal methylation motif 12 35 2.5E-8 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_05430 54ebd2abc555c6114c9b1c92c4373d2e 492 Gene3D G3DSA:3.40.50.720 1 208 8.5E-87 T 15-10-2018 NJ56_05430 54ebd2abc555c6114c9b1c92c4373d2e 492 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 355 483 4.0E-22 T 15-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 NJ56_05430 54ebd2abc555c6114c9b1c92c4373d2e 492 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 342 1.7E-26 T 15-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 NJ56_05430 54ebd2abc555c6114c9b1c92c4373d2e 492 SUPERFAMILY SSF48179 348 485 4.93E-41 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_05430 54ebd2abc555c6114c9b1c92c4373d2e 492 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 368 3.7E-133 T 15-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 NJ56_05430 54ebd2abc555c6114c9b1c92c4373d2e 492 SUPERFAMILY SSF48179 210 343 1.7E-39 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_05430 54ebd2abc555c6114c9b1c92c4373d2e 492 SUPERFAMILY SSF51735 4 206 6.25E-57 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_05430 54ebd2abc555c6114c9b1c92c4373d2e 492 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 1.9E-58 T 15-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 NJ56_05430 54ebd2abc555c6114c9b1c92c4373d2e 492 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 486 38.921 T 15-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 NJ56_05430 54ebd2abc555c6114c9b1c92c4373d2e 492 Gene3D G3DSA:1.10.1040.10 209 492 5.9E-126 T 15-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NJ56_03385 6724f43a366ec54f5bbcfed9ec2a6038 384 Gene3D G3DSA:2.120.10.80 189 379 8.4E-9 T 15-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 NJ56_03385 6724f43a366ec54f5bbcfed9ec2a6038 384 Pfam PF01344 Kelch motif 87 130 4.4E-8 T 15-10-2018 IPR006652 Kelch repeat type 1 GO:0005515 NJ56_03385 6724f43a366ec54f5bbcfed9ec2a6038 384 SUPERFAMILY SSF117281 28 170 8.76E-18 T 15-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 NJ56_03385 6724f43a366ec54f5bbcfed9ec2a6038 384 SUPERFAMILY SSF117281 196 375 2.35E-13 T 15-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 NJ56_03385 6724f43a366ec54f5bbcfed9ec2a6038 384 Gene3D G3DSA:2.120.10.80 23 186 3.5E-15 T 15-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 NJ56_03385 6724f43a366ec54f5bbcfed9ec2a6038 384 TIGRFAM TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family 30 375 6.4E-141 T 15-10-2018 IPR019936 Mutatrotase, YjhT-like NJ56_02895 968a39365a7de529f81931214c4289d0 271 Pfam PF00398 Ribosomal RNA adenine dimethylase 11 264 4.5E-79 T 15-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm NJ56_02895 968a39365a7de529f81931214c4289d0 271 Gene3D G3DSA:3.40.50.150 1 200 2.7E-66 T 15-10-2018 NJ56_02895 968a39365a7de529f81931214c4289d0 271 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 265 55.306 T 15-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 NJ56_02895 968a39365a7de529f81931214c4289d0 271 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 15-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 NJ56_02895 968a39365a7de529f81931214c4289d0 271 SUPERFAMILY SSF53335 17 265 4.18E-77 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_02895 968a39365a7de529f81931214c4289d0 271 Gene3D G3DSA:1.10.8.100 201 268 5.3E-28 T 15-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 NJ56_02895 968a39365a7de529f81931214c4289d0 271 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 11 264 4.3E-88 T 15-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 NJ56_02895 968a39365a7de529f81931214c4289d0 271 SMART SM00650 25 198 6.5E-83 T 15-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 NJ56_01440 1b7dd042fc511b0aad0d9ec88f7b3247 456 SUPERFAMILY SSF103473 3 392 1.44E-60 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_01440 1b7dd042fc511b0aad0d9ec88f7b3247 456 Gene3D G3DSA:1.20.1250.20 5 391 3.0E-99 T 15-10-2018 NJ56_01440 1b7dd042fc511b0aad0d9ec88f7b3247 456 Gene3D G3DSA:3.30.70.100 392 456 4.6E-27 T 15-10-2018 NJ56_01440 1b7dd042fc511b0aad0d9ec88f7b3247 456 Pfam PF07690 Major Facilitator Superfamily 22 356 4.7E-40 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_05470 c55e0ff954c6fb766ab7685ec5eca0d9 548 Gene3D G3DSA:3.40.50.1220 182 350 2.6E-54 T 15-10-2018 NJ56_05470 c55e0ff954c6fb766ab7685ec5eca0d9 548 SUPERFAMILY SSF52518 1 176 1.49E-63 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_05470 c55e0ff954c6fb766ab7685ec5eca0d9 548 SUPERFAMILY SSF52467 187 343 8.51E-57 T 15-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily NJ56_05470 c55e0ff954c6fb766ab7685ec5eca0d9 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 545 1.5E-214 T 15-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 NJ56_05470 c55e0ff954c6fb766ab7685ec5eca0d9 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 522 6.2E-48 T 15-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NJ56_05470 c55e0ff954c6fb766ab7685ec5eca0d9 548 SUPERFAMILY SSF52518 357 546 1.97E-63 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_05470 c55e0ff954c6fb766ab7685ec5eca0d9 548 Gene3D G3DSA:3.40.50.970 351 547 3.5E-64 T 15-10-2018 NJ56_05470 c55e0ff954c6fb766ab7685ec5eca0d9 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 321 1.5E-42 T 15-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 NJ56_05470 c55e0ff954c6fb766ab7685ec5eca0d9 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 164 4.7E-57 T 15-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 NJ56_05470 c55e0ff954c6fb766ab7685ec5eca0d9 548 Gene3D G3DSA:3.40.50.970 1 170 1.2E-68 T 15-10-2018 NJ56_04985 53cb761aa2e2625ac57b1bf62724a937 299 SUPERFAMILY SSF103481 37 131 3.79E-8 T 15-10-2018 NJ56_04985 53cb761aa2e2625ac57b1bf62724a937 299 SUPERFAMILY SSF103481 200 277 1.1E-7 T 15-10-2018 NJ56_04985 53cb761aa2e2625ac57b1bf62724a937 299 Pfam PF00892 EamA-like transporter family 139 274 9.1E-11 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_04985 53cb761aa2e2625ac57b1bf62724a937 299 Pfam PF00892 EamA-like transporter family 1 129 2.0E-9 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_04985 53cb761aa2e2625ac57b1bf62724a937 299 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 273 6.4E-84 T 15-10-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 Gene3D G3DSA:3.40.50.300 90 285 9.0E-125 T 15-10-2018 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.7E-23 T 15-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 2.4E-76 T 15-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 Pfam PF02978 Signal peptide binding domain 329 427 1.6E-32 T 15-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 SUPERFAMILY SSF47446 298 431 7.72E-46 T 15-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 15-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 SMART SM00382 99 247 1.0E-8 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 Gene3D G3DSA:1.20.120.140 4 305 9.0E-125 T 15-10-2018 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 SMART SM00962 100 296 1.6E-119 T 15-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 6.5E-181 T 15-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 Gene3D G3DSA:1.10.260.30 328 450 3.7E-45 T 15-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 35.027 T 15-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 SUPERFAMILY SSF52540 42 354 2.79E-57 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01925 73b43cd587cafdd5bfdff08a991f8ca5 453 SMART SM00963 1 86 3.5E-37 T 15-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 NJ56_01090 db9e9fc009294b2b5cf29bf6c5d9db32 384 Gene3D G3DSA:3.30.1890.10 67 333 2.2E-91 T 15-10-2018 NJ56_01090 db9e9fc009294b2b5cf29bf6c5d9db32 384 SUPERFAMILY SSF160355 67 333 5.62E-81 T 15-10-2018 NJ56_01090 db9e9fc009294b2b5cf29bf6c5d9db32 384 Pfam PF02706 Chain length determinant protein 28 126 1.3E-20 T 15-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 NJ56_01090 db9e9fc009294b2b5cf29bf6c5d9db32 384 Gene3D G3DSA:1.10.287.210 210 320 2.2E-91 T 15-10-2018 NJ56_11615 7ab4fbf0e6c6d2ba6d42a0135bf32d71 343 Gene3D G3DSA:1.10.260.40 3 70 7.3E-22 T 15-10-2018 NJ56_11615 7ab4fbf0e6c6d2ba6d42a0135bf32d71 343 Gene3D G3DSA:3.40.50.2300 168 301 2.9E-59 T 15-10-2018 NJ56_11615 7ab4fbf0e6c6d2ba6d42a0135bf32d71 343 SMART SM00354 12 82 6.1E-30 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_11615 7ab4fbf0e6c6d2ba6d42a0135bf32d71 343 SUPERFAMILY SSF53822 70 321 2.08E-43 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_11615 7ab4fbf0e6c6d2ba6d42a0135bf32d71 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 4.6E-19 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_11615 7ab4fbf0e6c6d2ba6d42a0135bf32d71 343 Gene3D G3DSA:3.40.50.2300 74 317 2.9E-59 T 15-10-2018 NJ56_11615 7ab4fbf0e6c6d2ba6d42a0135bf32d71 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 15-10-2018 NJ56_11615 7ab4fbf0e6c6d2ba6d42a0135bf32d71 343 SUPERFAMILY SSF47413 12 70 6.94E-17 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_11615 7ab4fbf0e6c6d2ba6d42a0135bf32d71 343 Pfam PF13377 Periplasmic binding protein-like domain 179 343 1.1E-27 T 15-10-2018 NJ56_02915 ec4312be49106301db56d3388853534c 160 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 15-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 NJ56_02915 ec4312be49106301db56d3388853534c 160 Pfam PF00186 Dihydrofolate reductase 3 159 3.8E-58 T 15-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 NJ56_02915 ec4312be49106301db56d3388853534c 160 SUPERFAMILY SSF53597 1 160 1.7E-56 T 15-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 NJ56_02915 ec4312be49106301db56d3388853534c 160 Gene3D G3DSA:3.40.430.10 1 160 4.7E-58 T 15-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 NJ56_02915 ec4312be49106301db56d3388853534c 160 PIRSF PIRSF000194 1 160 1.3E-58 T 15-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 NJ56_02915 ec4312be49106301db56d3388853534c 160 PRINTS PR00070 Dihydrofolate reductase signature 41 52 3.7E-14 T 15-10-2018 NJ56_02915 ec4312be49106301db56d3388853534c 160 PRINTS PR00070 Dihydrofolate reductase signature 91 105 3.7E-14 T 15-10-2018 NJ56_02915 ec4312be49106301db56d3388853534c 160 PRINTS PR00070 Dihydrofolate reductase signature 14 24 3.7E-14 T 15-10-2018 NJ56_02915 ec4312be49106301db56d3388853534c 160 PRINTS PR00070 Dihydrofolate reductase signature 28 36 3.7E-14 T 15-10-2018 NJ56_03870 69554d2aa512d229762d0879d739589d 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 2.1E-43 T 15-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03870 69554d2aa512d229762d0879d739589d 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 1.0E-18 T 15-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03870 69554d2aa512d229762d0879d739589d 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 15-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_03870 69554d2aa512d229762d0879d739589d 85 SUPERFAMILY SSF110324 2 79 1.88E-34 T 15-10-2018 NJ56_03870 69554d2aa512d229762d0879d739589d 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 2.7E-39 T 15-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03870 69554d2aa512d229762d0879d739589d 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 2.7E-39 T 15-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03870 69554d2aa512d229762d0879d739589d 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 2.7E-39 T 15-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03870 69554d2aa512d229762d0879d739589d 85 Gene3D G3DSA:2.40.50.100 21 85 1.1E-30 T 15-10-2018 NJ56_03870 69554d2aa512d229762d0879d739589d 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.288 T 15-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03870 69554d2aa512d229762d0879d739589d 85 Pfam PF01016 Ribosomal L27 protein 2 82 4.0E-39 T 15-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14250 dd0085454e06b6e1bcadaa918786fc9a 183 Gene3D G3DSA:3.30.110.10 84 183 4.2E-37 T 15-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 NJ56_14250 dd0085454e06b6e1bcadaa918786fc9a 183 SUPERFAMILY SSF55200 90 182 2.75E-32 T 15-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 NJ56_14250 dd0085454e06b6e1bcadaa918786fc9a 183 Gene3D G3DSA:3.10.20.80 10 83 7.7E-33 T 15-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 NJ56_14250 dd0085454e06b6e1bcadaa918786fc9a 183 ProSitePatterns PS00938 Initiation factor 3 signature. 66 79 - T 15-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 NJ56_14250 dd0085454e06b6e1bcadaa918786fc9a 183 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 15 182 8.1E-74 T 15-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 NJ56_14250 dd0085454e06b6e1bcadaa918786fc9a 183 SUPERFAMILY SSF54364 13 86 4.05E-29 T 15-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 NJ56_14250 dd0085454e06b6e1bcadaa918786fc9a 183 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 91 180 1.2E-35 T 15-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 NJ56_14250 dd0085454e06b6e1bcadaa918786fc9a 183 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 15 84 1.7E-31 T 15-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 NJ56_14250 dd0085454e06b6e1bcadaa918786fc9a 183 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 9 182 30.388 T 15-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 15-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 497 6.8E-252 T 15-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 Pfam PF00682 HMGL-like 4 273 8.8E-105 T 15-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 499 1.2E-36 T 15-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 SUPERFAMILY SSF51569 1 291 2.01E-100 T 15-10-2018 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 Gene3D G3DSA:3.20.20.70 1 277 3.0E-108 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 SUPERFAMILY SSF110921 391 499 1.15E-25 T 15-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 Gene3D G3DSA:3.30.160.270 393 501 9.6E-12 T 15-10-2018 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 43.357 T 15-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 15-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 SMART SM00917 369 500 2.7E-38 T 15-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 NJ56_02805 546abb48ef139a779315f0aeabafae8a 520 Gene3D G3DSA:1.10.238.260 280 392 9.9E-33 T 15-10-2018 NJ56_04865 838e0d62bde180ba92ea83a1c9572d83 204 SUPERFAMILY SSF54211 2 130 1.86E-42 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_04865 838e0d62bde180ba92ea83a1c9572d83 204 Gene3D G3DSA:3.30.70.240 135 204 1.3E-26 T 15-10-2018 NJ56_04865 838e0d62bde180ba92ea83a1c9572d83 204 Pfam PF01205 Uncharacterized protein family UPF0029 18 125 1.8E-28 T 15-10-2018 IPR001498 Impact, N-terminal NJ56_04865 838e0d62bde180ba92ea83a1c9572d83 204 SUPERFAMILY SSF54980 137 203 2.45E-14 T 15-10-2018 IPR035647 EF-G domain III/V-like NJ56_04865 838e0d62bde180ba92ea83a1c9572d83 204 Gene3D G3DSA:3.30.230.30 1 134 1.6E-52 T 15-10-2018 IPR036956 Impact, N-terminal domain superfamily NJ56_04865 838e0d62bde180ba92ea83a1c9572d83 204 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 1 202 1.5E-73 T 15-10-2018 IPR015796 Impact family, bacterial/archaeal NJ56_04865 838e0d62bde180ba92ea83a1c9572d83 204 Pfam PF09186 Domain of unknown function (DUF1949) 142 195 5.2E-12 T 15-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal NJ56_04865 838e0d62bde180ba92ea83a1c9572d83 204 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 80 109 - T 15-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site NJ56_07195 54aed5ec8a4b771041b517e39b8b681c 406 SUPERFAMILY SSF53383 18 399 1.25E-125 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_07195 54aed5ec8a4b771041b517e39b8b681c 406 Pfam PF00202 Aminotransferase class-III 24 398 1.4E-135 T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_07195 54aed5ec8a4b771041b517e39b8b681c 406 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 399 3.0E-152 T 15-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 NJ56_07195 54aed5ec8a4b771041b517e39b8b681c 406 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 15 402 71.015 T 15-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 NJ56_07195 54aed5ec8a4b771041b517e39b8b681c 406 Gene3D G3DSA:3.40.640.10 59 304 5.2E-155 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_07195 54aed5ec8a4b771041b517e39b8b681c 406 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 402 8.0E-206 T 15-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 NJ56_07195 54aed5ec8a4b771041b517e39b8b681c 406 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_07195 54aed5ec8a4b771041b517e39b8b681c 406 Gene3D G3DSA:3.90.1150.10 29 392 5.2E-155 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_07195 54aed5ec8a4b771041b517e39b8b681c 406 PIRSF PIRSF000521 26 155 1.9E-8 T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_07195 54aed5ec8a4b771041b517e39b8b681c 406 PIRSF PIRSF000521 173 402 1.2E-34 T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_14455 0983f94b7f29df06d3a7592da15f6c0b 248 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 1.8E-111 T 15-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 NJ56_14455 0983f94b7f29df06d3a7592da15f6c0b 248 Pfam PF00005 ABC transporter 17 172 7.2E-20 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_14455 0983f94b7f29df06d3a7592da15f6c0b 248 SMART SM00382 26 223 1.1E-7 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_14455 0983f94b7f29df06d3a7592da15f6c0b 248 Gene3D G3DSA:3.40.50.300 1 248 1.8E-65 T 15-10-2018 NJ56_14455 0983f94b7f29df06d3a7592da15f6c0b 248 SUPERFAMILY SSF52540 2 231 1.13E-43 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_14455 0983f94b7f29df06d3a7592da15f6c0b 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_07475 ca280ed890f2ad24ff8b4a1ab6e683f9 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.3E-52 T 15-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07475 ca280ed890f2ad24ff8b4a1ab6e683f9 118 SUPERFAMILY SSF46946 2 114 9.42E-46 T 15-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 NJ56_07475 ca280ed890f2ad24ff8b4a1ab6e683f9 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 27.172 T 15-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07475 ca280ed890f2ad24ff8b4a1ab6e683f9 118 Gene3D G3DSA:1.10.8.50 1 71 3.3E-27 T 15-10-2018 NJ56_07475 ca280ed890f2ad24ff8b4a1ab6e683f9 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 15-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07475 ca280ed890f2ad24ff8b4a1ab6e683f9 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 8.2E-33 T 15-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07475 ca280ed890f2ad24ff8b4a1ab6e683f9 118 Gene3D G3DSA:4.10.910.10 72 118 2.3E-25 T 15-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07475 ca280ed890f2ad24ff8b4a1ab6e683f9 118 PIRSF PIRSF002134 1 118 4.3E-41 T 15-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07975 cd09b07e0aafe2d02590e2385564f281 150 SUPERFAMILY SSF52304 4 146 5.23E-62 T 15-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NJ56_07975 cd09b07e0aafe2d02590e2385564f281 150 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 150 75.416 T 15-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NJ56_07975 cd09b07e0aafe2d02590e2385564f281 150 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 21 150 7.0E-68 T 15-10-2018 NJ56_07975 cd09b07e0aafe2d02590e2385564f281 150 ProSitePatterns PS01029 Dehydroquinase class II signature. 10 27 - T 15-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NJ56_07975 cd09b07e0aafe2d02590e2385564f281 150 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 6 145 2.7E-61 T 15-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NJ56_07975 cd09b07e0aafe2d02590e2385564f281 150 PIRSF PIRSF001399 3 149 3.5E-59 T 15-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NJ56_07975 cd09b07e0aafe2d02590e2385564f281 150 Gene3D G3DSA:3.40.50.9100 1 150 5.9E-69 T 15-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NJ56_07975 cd09b07e0aafe2d02590e2385564f281 150 Pfam PF01220 Dehydroquinase class II 7 142 3.5E-61 T 15-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NJ56_10580 db71cc031c3d2ec0c8b36b9dea3d7039 1666 Gene3D G3DSA:2.60.40.1930 401 491 2.8E-5 T 15-10-2018 NJ56_10580 db71cc031c3d2ec0c8b36b9dea3d7039 1666 Pfam PF00207 Alpha-2-macroglobulin family 987 1068 1.8E-7 T 15-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 NJ56_10580 db71cc031c3d2ec0c8b36b9dea3d7039 1666 Pfam PF10569 Alpha-macro-globulin thiol-ester bond-forming region 1194 1212 8.6E-5 T 15-10-2018 IPR019565 Alpha-2-macroglobulin, thiol-ester bond-forming NJ56_10580 db71cc031c3d2ec0c8b36b9dea3d7039 1666 Gene3D G3DSA:1.50.10.20 1184 1445 5.5E-26 T 15-10-2018 NJ56_10580 db71cc031c3d2ec0c8b36b9dea3d7039 1666 SMART SM01360 980 1069 8.1E-19 T 15-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 NJ56_10580 db71cc031c3d2ec0c8b36b9dea3d7039 1666 SUPERFAMILY SSF48239 1188 1445 2.69E-38 T 15-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid NJ56_10580 db71cc031c3d2ec0c8b36b9dea3d7039 1666 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 297 389 1.5E-21 T 15-10-2018 NJ56_10580 db71cc031c3d2ec0c8b36b9dea3d7039 1666 Pfam PF01835 MG2 domain 396 487 5.8E-17 T 15-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 NJ56_10580 db71cc031c3d2ec0c8b36b9dea3d7039 1666 SMART SM01359 767 915 8.1E-38 T 15-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 NJ56_10580 db71cc031c3d2ec0c8b36b9dea3d7039 1666 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 768 914 7.4E-14 T 15-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 NJ56_10580 db71cc031c3d2ec0c8b36b9dea3d7039 1666 PIRSF PIRSF038980 6 1666 0.0 T 15-10-2018 IPR026284 Alpha-2-macroglobulin domain protein, bacteria NJ56_09470 33d3b32e3037d8891c923825901fa4a5 718 Gene3D G3DSA:3.40.50.12780 195 614 2.6E-79 T 15-10-2018 NJ56_09470 33d3b32e3037d8891c923825901fa4a5 718 Gene3D G3DSA:3.30.300.30 616 714 5.1E-10 T 15-10-2018 NJ56_09470 33d3b32e3037d8891c923825901fa4a5 718 Pfam PF13193 AMP-binding enzyme C-terminal domain 629 701 5.7E-6 T 15-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain NJ56_09470 33d3b32e3037d8891c923825901fa4a5 718 SUPERFAMILY SSF69593 8 166 2.88E-19 T 15-10-2018 NJ56_09470 33d3b32e3037d8891c923825901fa4a5 718 SUPERFAMILY SSF56801 205 713 4.58E-101 T 15-10-2018 NJ56_09470 33d3b32e3037d8891c923825901fa4a5 718 Hamap MF_01162 Bifunctional protein Aas [aas]. 1 717 55.348 T 15-10-2018 IPR023775 Bifunctional protein Aas GO:0006631|GO:0008654|GO:0008779|GO:0008922 KEGG: 00071+6.2.1.20|KEGG: 00564+2.3.1.40|MetaCyc: PWY-6622|MetaCyc: PWY-7032 NJ56_09470 33d3b32e3037d8891c923825901fa4a5 718 Pfam PF00501 AMP-binding enzyme 229 619 6.5E-68 T 15-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 NJ56_09470 33d3b32e3037d8891c923825901fa4a5 718 Pfam PF01553 Acyltransferase 27 137 1.9E-16 T 15-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 NJ56_09470 33d3b32e3037d8891c923825901fa4a5 718 SMART SM00563 30 140 1.6E-26 T 15-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 NJ56_09470 33d3b32e3037d8891c923825901fa4a5 718 ProSitePatterns PS00455 Putative AMP-binding domain signature. 370 381 - T 15-10-2018 IPR020845 AMP-binding, conserved site NJ56_07600 23dcb34183919e0946f8e45ebaa34da0 309 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 302 2.3E-158 T 15-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 NJ56_07600 23dcb34183919e0946f8e45ebaa34da0 309 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 299 40.55 T 15-10-2018 IPR033752 MetA family NJ56_07600 23dcb34183919e0946f8e45ebaa34da0 309 Pfam PF04204 Homoserine O-succinyltransferase 2 299 2.3E-130 T 15-10-2018 IPR033752 MetA family NJ56_07600 23dcb34183919e0946f8e45ebaa34da0 309 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 2.0E-136 T 15-10-2018 NJ56_07600 23dcb34183919e0946f8e45ebaa34da0 309 PIRSF PIRSF000450 1 308 3.9E-145 T 15-10-2018 IPR033752 MetA family NJ56_07600 23dcb34183919e0946f8e45ebaa34da0 309 SUPERFAMILY SSF52317 17 297 1.27E-99 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_07600 23dcb34183919e0946f8e45ebaa34da0 309 Gene3D G3DSA:3.40.50.880 1 301 5.0E-119 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 PIRSF PIRSF002401 1 377 7.3E-141 T 15-10-2018 IPR035101 GTP-binding protein, Obg-type NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 Gene3D G3DSA:3.40.50.300 159 338 1.1E-52 T 15-10-2018 NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 Pfam PF01926 50S ribosome-binding GTPase 161 284 7.7E-24 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 SUPERFAMILY SSF52540 151 338 1.39E-47 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 Pfam PF01018 GTP1/OBG 4 156 1.9E-59 T 15-10-2018 IPR006169 GTP1/OBG domain NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 SUPERFAMILY SSF82051 2 157 8.11E-58 T 15-10-2018 IPR036726 GTP1/OBG domain superfamily NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 6.5E-148 T 15-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 Gene3D G3DSA:2.70.210.12 1 158 5.8E-63 T 15-10-2018 IPR036726 GTP1/OBG domain superfamily NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.6E-34 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.6E-34 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.6E-34 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.6E-34 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.391 T 15-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 NJ56_03860 b4d07792a08835ae2447456bd35e7059 390 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 15-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 NJ56_15585 678a36f45f3f19fcf07bd5721e8fd495 616 SUPERFAMILY SSF52096 312 528 2.4E-41 T 15-10-2018 IPR029045 ClpP/crotonase-like domain superfamily NJ56_15585 678a36f45f3f19fcf07bd5721e8fd495 616 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 326 539 8.3E-52 T 15-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 NJ56_15585 678a36f45f3f19fcf07bd5721e8fd495 616 Pfam PF01343 Peptidase family S49 139 291 1.7E-36 T 15-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 NJ56_15585 678a36f45f3f19fcf07bd5721e8fd495 616 Pfam PF01343 Peptidase family S49 390 541 4.6E-48 T 15-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 NJ56_15585 678a36f45f3f19fcf07bd5721e8fd495 616 Gene3D G3DSA:3.40.1750.10 187 496 4.3E-165 T 15-10-2018 NJ56_15585 678a36f45f3f19fcf07bd5721e8fd495 616 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 607 9.4E-222 T 15-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 NJ56_15585 678a36f45f3f19fcf07bd5721e8fd495 616 PIRSF PIRSF001217 8 616 7.3E-214 T 15-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 NJ56_15585 678a36f45f3f19fcf07bd5721e8fd495 616 Gene3D G3DSA:3.90.226.10 317 539 4.3E-165 T 15-10-2018 NJ56_15585 678a36f45f3f19fcf07bd5721e8fd495 616 SUPERFAMILY SSF52096 35 286 8.03E-27 T 15-10-2018 IPR029045 ClpP/crotonase-like domain superfamily NJ56_15585 678a36f45f3f19fcf07bd5721e8fd495 616 Gene3D G3DSA:3.90.226.10 95 316 4.3E-165 T 15-10-2018 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 248 276 - T 15-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 Pfam PF07478 D-ala D-ala ligase C-terminus 103 302 4.4E-68 T 15-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 Gene3D G3DSA:3.30.1490.20 111 183 1.7E-85 T 15-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 PIRSF PIRSF039102 41 306 2.7E-93 T 15-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 PIRSF PIRSF039102 1 45 2.0E-7 T 15-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 4 305 1.8E-108 T 15-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 Gene3D G3DSA:3.30.470.20 85 301 1.7E-85 T 15-10-2018 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 Pfam PF01820 D-ala D-ala ligase N-terminus 4 86 7.1E-18 T 15-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 SUPERFAMILY SSF52440 3 96 4.51E-29 T 15-10-2018 IPR016185 Pre-ATP-grasp domain superfamily NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 Gene3D G3DSA:3.40.50.20 1 84 9.3E-32 T 15-10-2018 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 63 74 - T 15-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 306 36.919 T 15-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_02705 f5097f110fb6f2646e16362d6a6a0b14 306 SUPERFAMILY SSF56059 97 302 6.23E-59 T 15-10-2018 NJ56_17380 249a4130b9befb3a0bb07a6e2a9e9144 345 SUPERFAMILY SSF53822 66 335 1.58E-76 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_17380 249a4130b9befb3a0bb07a6e2a9e9144 345 Pfam PF13377 Periplasmic binding protein-like domain 176 334 2.7E-29 T 15-10-2018 NJ56_17380 249a4130b9befb3a0bb07a6e2a9e9144 345 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 15-10-2018 NJ56_17380 249a4130b9befb3a0bb07a6e2a9e9144 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 3.4E-20 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_17380 249a4130b9befb3a0bb07a6e2a9e9144 345 Gene3D G3DSA:3.40.50.2300 61 309 8.7E-66 T 15-10-2018 NJ56_17380 249a4130b9befb3a0bb07a6e2a9e9144 345 SUPERFAMILY SSF47413 6 64 1.58E-18 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_17380 249a4130b9befb3a0bb07a6e2a9e9144 345 Gene3D G3DSA:1.10.260.40 5 60 1.8E-24 T 15-10-2018 NJ56_17380 249a4130b9befb3a0bb07a6e2a9e9144 345 Gene3D G3DSA:3.40.50.2300 165 294 8.7E-66 T 15-10-2018 NJ56_17380 249a4130b9befb3a0bb07a6e2a9e9144 345 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 8 18 7.2E-7 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_17380 249a4130b9befb3a0bb07a6e2a9e9144 345 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 18 28 7.2E-7 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_17380 249a4130b9befb3a0bb07a6e2a9e9144 345 SMART SM00354 6 76 4.6E-33 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_16020 565ca1f2bb8c6565ac33540df6657aa0 281 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 274 46.253 T 15-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 NJ56_16020 565ca1f2bb8c6565ac33540df6657aa0 281 Gene3D G3DSA:1.10.8.10 1 84 2.4E-23 T 15-10-2018 NJ56_16020 565ca1f2bb8c6565ac33540df6657aa0 281 Gene3D G3DSA:3.40.50.150 85 275 4.8E-62 T 15-10-2018 NJ56_16020 565ca1f2bb8c6565ac33540df6657aa0 281 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 179 185 - T 15-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NJ56_16020 565ca1f2bb8c6565ac33540df6657aa0 281 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 1 274 1.5E-90 T 15-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 NJ56_16020 565ca1f2bb8c6565ac33540df6657aa0 281 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 23 270 8.9E-91 T 15-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 NJ56_16020 565ca1f2bb8c6565ac33540df6657aa0 281 Pfam PF13847 Methyltransferase domain 109 247 2.0E-23 T 15-10-2018 IPR025714 Methyltransferase domain NJ56_16020 565ca1f2bb8c6565ac33540df6657aa0 281 SUPERFAMILY SSF53335 3 272 8.81E-59 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_13175 ec9465c9ebf3c09ce441d2ee2935e604 474 PIRSF PIRSF006060 2 472 1.1E-67 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_13175 ec9465c9ebf3c09ce441d2ee2935e604 474 Pfam PF00324 Amino acid permease 30 468 1.0E-112 T 15-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 NJ56_13175 ec9465c9ebf3c09ce441d2ee2935e604 474 ProSitePatterns PS00218 Amino acid permeases signature. 55 85 - T 15-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 NJ56_13175 ec9465c9ebf3c09ce441d2ee2935e604 474 Gene3D G3DSA:1.20.1740.10 20 473 7.5E-59 T 15-10-2018 NJ56_08350 99faeef52bcece4d900034d7aa35df32 298 Gene3D G3DSA:3.40.190.290 112 288 1.3E-11 T 15-10-2018 NJ56_08350 99faeef52bcece4d900034d7aa35df32 298 Pfam PF03466 LysR substrate binding domain 124 280 5.0E-17 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_08350 99faeef52bcece4d900034d7aa35df32 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 5.0E-16 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_08350 99faeef52bcece4d900034d7aa35df32 298 SUPERFAMILY SSF46785 8 91 4.23E-17 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_08350 99faeef52bcece4d900034d7aa35df32 298 SUPERFAMILY SSF53850 93 288 4.03E-21 T 15-10-2018 NJ56_08350 99faeef52bcece4d900034d7aa35df32 298 Gene3D G3DSA:1.10.10.10 6 94 2.0E-19 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_16435 23ee6a9688c68676b01381668f0da4f9 400 Pfam PF12704 MacB-like periplasmic core domain 27 209 1.6E-11 T 15-10-2018 IPR025857 MacB-like periplasmic core domain NJ56_16435 23ee6a9688c68676b01381668f0da4f9 400 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 400 9.2E-138 T 15-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 NJ56_16435 23ee6a9688c68676b01381668f0da4f9 400 Pfam PF02687 FtsX-like permease family 297 393 1.1E-12 T 15-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 NJ56_13805 94cb87a8e3528e6f775c68a0a17b03c8 128 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 61 103 - T 15-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 NJ56_13805 94cb87a8e3528e6f775c68a0a17b03c8 128 Gene3D G3DSA:1.10.10.60 3 60 2.1E-19 T 15-10-2018 NJ56_13805 94cb87a8e3528e6f775c68a0a17b03c8 128 Gene3D G3DSA:1.10.10.60 61 119 1.0E-16 T 15-10-2018 NJ56_13805 94cb87a8e3528e6f775c68a0a17b03c8 128 SUPERFAMILY SSF46689 10 58 7.7E-8 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_13805 94cb87a8e3528e6f775c68a0a17b03c8 128 Pfam PF12833 Helix-turn-helix domain 30 108 1.3E-23 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_13805 94cb87a8e3528e6f775c68a0a17b03c8 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 76 91 1.4E-7 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_13805 94cb87a8e3528e6f775c68a0a17b03c8 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 91 107 1.4E-7 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_13805 94cb87a8e3528e6f775c68a0a17b03c8 128 SUPERFAMILY SSF46689 60 110 1.93E-14 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_13805 94cb87a8e3528e6f775c68a0a17b03c8 128 SMART SM00342 24 107 9.2E-28 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 Gene3D G3DSA:3.40.50.300 1 303 7.6E-116 T 15-10-2018 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 Pfam PF00679 Elongation factor G C-terminus 609 694 2.0E-31 T 15-10-2018 IPR000640 Elongation factor EFG, domain V-like NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 SUPERFAMILY SSF52540 6 287 7.61E-106 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 SUPERFAMILY SSF54980 612 697 2.27E-29 T 15-10-2018 IPR035647 EF-G domain III/V-like NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 Pfam PF14492 Elongation Factor G, domain II 411 485 9.8E-34 T 15-10-2018 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 Gene3D G3DSA:3.30.70.240 613 683 1.9E-89 T 15-10-2018 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 Hamap MF_00054_B Elongation factor G [fusA]. 6 700 113.603 T 15-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 SUPERFAMILY SSF54211 486 608 1.39E-42 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 Gene3D G3DSA:3.30.70.870 412 487 1.3E-32 T 15-10-2018 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 1.7E-32 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 Pfam PF03144 Elongation factor Tu domain 2 331 398 9.7E-17 T 15-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 SUPERFAMILY SSF50447 271 411 1.02E-34 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 1.2E-66 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 SMART SM00838 609 696 2.3E-58 T 15-10-2018 IPR000640 Elongation factor EFG, domain V-like NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 Pfam PF03764 Elongation factor G, domain IV 486 607 7.6E-49 T 15-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 SUPERFAMILY SSF54980 409 487 1.73E-25 T 15-10-2018 IPR035647 EF-G domain III/V-like NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 SMART SM00889 487 607 1.3E-75 T 15-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 Gene3D G3DSA:2.40.30.10 304 411 6.4E-44 T 15-10-2018 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.7E-16 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.7E-16 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.7E-16 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.7E-16 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.7E-16 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 15-10-2018 IPR031157 Tr-type G domain, conserved site NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 701 0.0 T 15-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 NJ56_07335 b13bf8b0faba8e904549fc42a8e12880 702 Gene3D G3DSA:3.30.230.10 491 695 1.9E-89 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_16040 9fd7317d5c364bb3b58ccf56e433c2a6 285 Gene3D G3DSA:3.30.70.890 162 279 1.7E-26 T 15-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily NJ56_16040 9fd7317d5c364bb3b58ccf56e433c2a6 285 Pfam PF08544 GHMP kinases C terminal 213 257 7.5E-5 T 15-10-2018 IPR013750 GHMP kinase, C-terminal domain NJ56_16040 9fd7317d5c364bb3b58ccf56e433c2a6 285 SUPERFAMILY SSF54211 2 159 4.86E-48 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_16040 9fd7317d5c364bb3b58ccf56e433c2a6 285 Gene3D G3DSA:3.30.230.10 2 160 5.1E-56 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_16040 9fd7317d5c364bb3b58ccf56e433c2a6 285 Pfam PF00288 GHMP kinases N terminal domain 88 145 3.3E-11 T 15-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 NJ56_16040 9fd7317d5c364bb3b58ccf56e433c2a6 285 PIRSF PIRSF010376 1 280 7.9E-85 T 15-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 NJ56_16040 9fd7317d5c364bb3b58ccf56e433c2a6 285 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 3 276 1.3E-106 T 15-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 NJ56_16040 9fd7317d5c364bb3b58ccf56e433c2a6 285 SUPERFAMILY SSF55060 164 278 8.63E-36 T 15-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily NJ56_16040 9fd7317d5c364bb3b58ccf56e433c2a6 285 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 3 272 32.56 T 15-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 NJ56_05920 2f107eeb84ea7d8e3760041e264e83aa 151 Gene3D G3DSA:2.70.40.10 1 150 6.9E-53 T 15-10-2018 IPR036157 dUTPase-like superfamily NJ56_05920 2f107eeb84ea7d8e3760041e264e83aa 151 Pfam PF00692 dUTPase 16 149 2.3E-42 T 15-10-2018 IPR029054 dUTPase-like NJ56_05920 2f107eeb84ea7d8e3760041e264e83aa 151 TIGRFAM TIGR00576 dut: dUTP diphosphatase 11 150 7.3E-49 T 15-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 NJ56_05920 2f107eeb84ea7d8e3760041e264e83aa 151 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 6 150 34.501 T 15-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 NJ56_05920 2f107eeb84ea7d8e3760041e264e83aa 151 SUPERFAMILY SSF51283 1 150 3.27E-55 T 15-10-2018 IPR036157 dUTPase-like superfamily NJ56_02610 0108e6d2fab17842da7488e381862f77 451 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 15-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 NJ56_02610 0108e6d2fab17842da7488e381862f77 451 Gene3D G3DSA:1.20.1740.10 10 451 4.4E-56 T 15-10-2018 NJ56_02610 0108e6d2fab17842da7488e381862f77 451 PIRSF PIRSF006060 1 451 6.8E-71 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_02610 0108e6d2fab17842da7488e381862f77 451 Pfam PF00324 Amino acid permease 18 449 5.1E-116 T 15-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 NJ56_01095 84beb35c99900d8d5f72ba2a9f0ac48c 134 TIGRFAM TIGR04366 cupin_WbuC: cupin fold metalloprotein, WbuC family 3 134 4.0E-41 T 15-10-2018 IPR027565 Cupin fold metalloprotein, WbuC family NJ56_01095 84beb35c99900d8d5f72ba2a9f0ac48c 134 Gene3D G3DSA:2.60.120.10 10 132 1.7E-10 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_01095 84beb35c99900d8d5f72ba2a9f0ac48c 134 SUPERFAMILY SSF51182 29 124 2.97E-11 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 15-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 SUPERFAMILY SSF53738 305 446 1.12E-31 T 15-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 317 3.4E-18 T 15-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 SUPERFAMILY SSF53738 209 317 2.35E-8 T 15-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 SUPERFAMILY SSF55957 432 543 1.15E-19 T 15-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 320 440 6.9E-30 T 15-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 Gene3D G3DSA:3.40.120.10 221 318 1.4E-44 T 15-10-2018 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 Gene3D G3DSA:3.40.120.10 319 442 3.6E-36 T 15-10-2018 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 Gene3D G3DSA:3.30.310.50 443 546 9.6E-35 T 15-10-2018 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 180 7.3E-38 T 15-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 483 538 7.1E-8 T 15-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 Gene3D G3DSA:3.40.120.10 12 218 1.2E-77 T 15-10-2018 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 2 543 0.0 T 15-10-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-6981|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7900|MetaCyc: PWY-7902 NJ56_00470 5ff4a7e7d04d9f07a67a42e697cdc64a 547 SUPERFAMILY SSF53738 26 235 6.36E-53 T 15-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_18265 d64fcbea14539f48bf40113c91caeb00 179 Gene3D G3DSA:1.20.120.330 73 165 1.7E-10 T 15-10-2018 NJ56_18265 d64fcbea14539f48bf40113c91caeb00 179 Pfam PF05168 HEPN domain 77 157 8.2E-7 T 15-10-2018 IPR007842 HEPN domain NJ56_18265 d64fcbea14539f48bf40113c91caeb00 179 SUPERFAMILY SSF81593 77 163 4.32E-8 T 15-10-2018 NJ56_12645 f5484e8e16deb34dcede655ac51b226e 355 PIRSF PIRSF005751 1 348 1.5E-135 T 15-10-2018 IPR005216 Citrate lyase ligase GO:0008771 NJ56_12645 f5484e8e16deb34dcede655ac51b226e 355 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 119 335 1.0E-94 T 15-10-2018 NJ56_12645 f5484e8e16deb34dcede655ac51b226e 355 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 8 337 6.2E-155 T 15-10-2018 IPR005216 Citrate lyase ligase GO:0008771 NJ56_12645 f5484e8e16deb34dcede655ac51b226e 355 Pfam PF08218 Citrate lyase ligase C-terminal domain 145 331 2.1E-81 T 15-10-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 NJ56_12645 f5484e8e16deb34dcede655ac51b226e 355 SMART SM00764 145 331 1.8E-132 T 15-10-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 NJ56_12645 f5484e8e16deb34dcede655ac51b226e 355 SUPERFAMILY SSF55729 18 116 9.73E-9 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_12645 f5484e8e16deb34dcede655ac51b226e 355 SUPERFAMILY SSF52374 144 333 2.44E-25 T 15-10-2018 NJ56_12645 f5484e8e16deb34dcede655ac51b226e 355 Gene3D G3DSA:3.40.50.620 143 323 9.4E-17 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_12645 f5484e8e16deb34dcede655ac51b226e 355 Gene3D G3DSA:3.40.630.30 3 121 3.0E-8 T 15-10-2018 NJ56_12645 f5484e8e16deb34dcede655ac51b226e 355 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 145 201 6.4E-10 T 15-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NJ56_02840 2a3830bec48094a17cbcdfef8805c4d9 350 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 41 344 1.5E-142 T 15-10-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030975 NJ56_02840 2a3830bec48094a17cbcdfef8805c4d9 350 Gene3D G3DSA:3.40.190.10 46 320 2.6E-118 T 15-10-2018 NJ56_02840 2a3830bec48094a17cbcdfef8805c4d9 350 Gene3D G3DSA:3.40.190.10 146 345 2.6E-118 T 15-10-2018 NJ56_02840 2a3830bec48094a17cbcdfef8805c4d9 350 Pfam PF01547 Bacterial extracellular solute-binding protein 64 295 2.2E-17 T 15-10-2018 IPR006059 Bacterial extracellular solute-binding protein NJ56_02840 2a3830bec48094a17cbcdfef8805c4d9 350 SUPERFAMILY SSF53850 44 345 1.68E-65 T 15-10-2018 NJ56_02840 2a3830bec48094a17cbcdfef8805c4d9 350 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 28 349 6.8E-160 T 15-10-2018 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria GO:0015888|GO:0030288|GO:0030975 NJ56_15180 4c8a55d77d071731367607ad260e147d 610 SUPERFAMILY SSF55781 30 158 1.18E-24 T 15-10-2018 NJ56_15180 4c8a55d77d071731367607ad260e147d 610 Gene3D G3DSA:3.30.450.20 171 317 1.8E-25 T 15-10-2018 NJ56_15180 4c8a55d77d071731367607ad260e147d 610 SUPERFAMILY SSF55785 186 297 1.39E-24 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_15180 4c8a55d77d071731367607ad260e147d 610 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 176 301 3.0E-25 T 15-10-2018 IPR000014 PAS domain NJ56_15180 4c8a55d77d071731367607ad260e147d 610 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 330 445 5.3E-8 T 15-10-2018 IPR000014 PAS domain NJ56_15180 4c8a55d77d071731367607ad260e147d 610 Pfam PF00990 Diguanylate cyclase, GGDEF domain 450 605 3.1E-43 T 15-10-2018 IPR000160 GGDEF domain NJ56_15180 4c8a55d77d071731367607ad260e147d 610 SUPERFAMILY SSF55785 324 435 1.45E-10 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_15180 4c8a55d77d071731367607ad260e147d 610 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 446 608 5.5E-37 T 15-10-2018 IPR000160 GGDEF domain NJ56_15180 4c8a55d77d071731367607ad260e147d 610 SMART SM00091 179 245 1.1E-11 T 15-10-2018 IPR000014 PAS domain NJ56_15180 4c8a55d77d071731367607ad260e147d 610 SMART SM00091 331 397 1.5 T 15-10-2018 IPR000014 PAS domain NJ56_15180 4c8a55d77d071731367607ad260e147d 610 Gene3D G3DSA:3.30.450.40 13 158 2.9E-14 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_15180 4c8a55d77d071731367607ad260e147d 610 Gene3D G3DSA:3.30.70.270 448 610 1.1E-49 T 15-10-2018 NJ56_15180 4c8a55d77d071731367607ad260e147d 610 Gene3D G3DSA:3.30.450.20 318 447 3.5E-18 T 15-10-2018 NJ56_15180 4c8a55d77d071731367607ad260e147d 610 SUPERFAMILY SSF55073 454 608 5.18E-40 T 15-10-2018 IPR029787 Nucleotide cyclase NJ56_15180 4c8a55d77d071731367607ad260e147d 610 Pfam PF01590 GAF domain 31 151 3.6E-8 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_15180 4c8a55d77d071731367607ad260e147d 610 Pfam PF08447 PAS fold 203 288 7.0E-15 T 15-10-2018 IPR013655 PAS fold-3 GO:0005515 NJ56_15180 4c8a55d77d071731367607ad260e147d 610 SMART SM00065 26 171 1.0E-4 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_15180 4c8a55d77d071731367607ad260e147d 610 SMART SM00086 252 294 4.2E-8 T 15-10-2018 IPR001610 PAC motif NJ56_15180 4c8a55d77d071731367607ad260e147d 610 SMART SM00267 438 610 3.3E-53 T 15-10-2018 IPR000160 GGDEF domain NJ56_15180 4c8a55d77d071731367607ad260e147d 610 Pfam PF08448 PAS fold 338 439 1.1E-7 T 15-10-2018 IPR013656 PAS fold-4 NJ56_02675 6c694b7ac36b677904190b13fc91c430 179 PIRSF PIRSF004572 1 179 2.9E-78 T 15-10-2018 IPR009502 Secretion monitor GO:0045182 NJ56_02675 6c694b7ac36b677904190b13fc91c430 179 ProDom PD089227 MONITOR PERIPLASMIC SECRETION PRECURSOR SIGNAL YACA 1 179 4.0E-67 T 15-10-2018 IPR009502 Secretion monitor GO:0045182 NJ56_02675 6c694b7ac36b677904190b13fc91c430 179 Pfam PF06558 Secretion monitor precursor protein (SecM) 24 176 6.3E-57 T 15-10-2018 IPR009502 Secretion monitor GO:0045182 NJ56_02675 6c694b7ac36b677904190b13fc91c430 179 Hamap MF_01332 Secretion monitor [secM]. 1 179 41.707 T 15-10-2018 IPR009502 Secretion monitor GO:0045182 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 549 53.899 T 15-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 SUPERFAMILY SSF52374 11 337 3.1E-100 T 15-10-2018 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 73 2.4E-9 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 45 56 2.4E-9 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 31 43 2.4E-9 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 220 2.4E-9 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 34 45 - T 15-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 28 550 3.2E-303 T 15-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 340 528 1.2E-63 T 15-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 Gene3D G3DSA:3.90.800.10 101 209 1.2E-106 T 15-10-2018 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 Gene3D G3DSA:2.40.240.10 463 547 6.7E-35 T 15-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 Gene3D G3DSA:3.40.50.620 30 247 1.2E-106 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 Gene3D G3DSA:1.10.1160.10 261 339 6.0E-36 T 15-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 337 4.3E-127 T 15-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 Gene3D G3DSA:2.40.240.10 348 462 2.1E-47 T 15-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 NJ56_00520 b028a4f444c729d0703d867f5e241edc 555 SUPERFAMILY SSF50715 340 547 6.8E-80 T 15-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 SMART SM00322 552 617 1.4E-12 T 15-10-2018 IPR004087 K Homology domain GO:0003676 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 SUPERFAMILY SSF55666 450 548 1.4E-28 T 15-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Gene3D G3DSA:3.30.1370.10 550 621 2.4E-19 T 15-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 SMART SM00316 620 690 6.1E-27 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 SUPERFAMILY SSF54791 554 622 2.15E-17 T 15-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Pfam PF00575 S1 RNA binding domain 619 690 3.3E-22 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Pfam PF00013 KH domain 556 614 1.6E-9 T 15-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 PIRSF PIRSF005499 2 705 7.2E-302 T 15-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Gene3D G3DSA:3.30.230.70 236 549 4.1E-116 T 15-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 693 30.533 T 15-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 691 0.0 T 15-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 320 2.3E-25 T 15-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 SUPERFAMILY SSF54211 5 144 3.64E-49 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_03765 0afe71993219cc90955e437d870b1e60 706 SUPERFAMILY SSF54211 291 488 1.72E-47 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Gene3D G3DSA:3.30.230.70 4 235 1.1E-78 T 15-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 SUPERFAMILY SSF55666 145 236 1.54E-30 T 15-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Pfam PF03725 3' exoribonuclease family, domain 2 460 527 2.4E-7 T 15-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 1.2E-13 T 15-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 SUPERFAMILY SSF50249 608 692 2.23E-22 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Pfam PF01138 3' exoribonuclease family, domain 1 324 456 4.6E-22 T 15-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 3.0E-18 T 15-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_03765 0afe71993219cc90955e437d870b1e60 706 Gene3D G3DSA:2.40.50.140 622 693 8.6E-29 T 15-10-2018 NJ56_06985 f05c7736cd4d1d29e8f28a8a8f9c3f08 80 Gene3D G3DSA:1.10.10.10 1 78 9.1E-35 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_06985 f05c7736cd4d1d29e8f28a8a8f9c3f08 80 SUPERFAMILY SSF46785 1 75 1.48E-21 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_06985 f05c7736cd4d1d29e8f28a8a8f9c3f08 80 Hamap MF_01586 Probable [Fe-S]-dependent transcriptional repressor [feoC]. 1 78 26.31 T 15-10-2018 IPR023732 Probable [Fe-S]-dependent transcriptional repressor NJ56_06985 f05c7736cd4d1d29e8f28a8a8f9c3f08 80 Pfam PF09012 FeoC like transcriptional regulator 3 75 4.7E-19 T 15-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC NJ56_02025 2878c9458c92a2cb4ef914ef82df0717 169 SUPERFAMILY SSF81342 3 168 4.16E-20 T 15-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 NJ56_02025 2878c9458c92a2cb4ef914ef82df0717 169 Gene3D G3DSA:1.20.950.20 1 82 1.1E-6 T 15-10-2018 NJ56_02025 2878c9458c92a2cb4ef914ef82df0717 169 Pfam PF01292 Prokaryotic cytochrome b561 5 167 7.8E-19 T 15-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 289 297 - T 15-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 59 66 2.8E-5 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 119 138 2.8E-5 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 41 51 2.8E-5 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 156 167 2.8E-5 T 15-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 PRINTS PR00406 Cytochrome B5 reductase signature 59 66 8.9E-7 T 15-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 PRINTS PR00406 Cytochrome B5 reductase signature 119 138 8.9E-7 T 15-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 PRINTS PR00406 Cytochrome B5 reductase signature 210 218 8.9E-7 T 15-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 PRINTS PR00406 Cytochrome B5 reductase signature 156 167 8.9E-7 T 15-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 SUPERFAMILY SSF63380 15 109 4.64E-21 T 15-10-2018 IPR017938 Riboflavin synthase-like beta-barrel NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 Gene3D G3DSA:3.40.50.80 109 247 1.6E-26 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 SUPERFAMILY SSF52343 99 240 1.44E-29 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 SUPERFAMILY SSF54292 234 335 6.82E-22 T 15-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 261 330 8.7E-12 T 15-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 Gene3D G3DSA:2.40.30.10 11 106 4.9E-19 T 15-10-2018 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 Pfam PF00970 Oxidoreductase FAD-binding domain 39 108 2.6E-7 T 15-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 Gene3D G3DSA:3.10.20.30 251 338 6.3E-19 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_17065 d1c0256c979e6af24477089424ed49a5 338 Pfam PF00175 Oxidoreductase NAD-binding domain 120 223 1.0E-14 T 15-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 NJ56_14015 5085ac7498444e16a4549fd53a7dc55a 316 Pfam PF00561 alpha/beta hydrolase fold 41 297 3.6E-30 T 15-10-2018 IPR000073 Alpha/beta hydrolase fold-1 NJ56_14015 5085ac7498444e16a4549fd53a7dc55a 316 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 12 314 7.3E-124 T 15-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 NJ56_14015 5085ac7498444e16a4549fd53a7dc55a 316 PIRSF PIRSF006431 3 316 1.0E-138 T 15-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 NJ56_14015 5085ac7498444e16a4549fd53a7dc55a 316 Gene3D G3DSA:3.40.50.1820 1 316 1.1E-111 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_14015 5085ac7498444e16a4549fd53a7dc55a 316 SUPERFAMILY SSF53474 7 309 1.28E-59 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_14015 5085ac7498444e16a4549fd53a7dc55a 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 66 77 5.7E-14 T 15-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 NJ56_14015 5085ac7498444e16a4549fd53a7dc55a 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 109 123 5.7E-14 T 15-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 NJ56_14015 5085ac7498444e16a4549fd53a7dc55a 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 40 48 5.7E-14 T 15-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 NJ56_05405 d1ec5fc284144667fb4787ac9bb6e9e8 108 Gene3D G3DSA:3.40.30.10 1 108 1.8E-37 T 15-10-2018 NJ56_05405 d1ec5fc284144667fb4787ac9bb6e9e8 108 Pfam PF00085 Thioredoxin 5 106 2.8E-34 T 15-10-2018 IPR013766 Thioredoxin domain GO:0045454 NJ56_05405 d1ec5fc284144667fb4787ac9bb6e9e8 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 15-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 NJ56_05405 d1ec5fc284144667fb4787ac9bb6e9e8 108 SUPERFAMILY SSF52833 2 108 7.36E-41 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_05405 d1ec5fc284144667fb4787ac9bb6e9e8 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 1.3E-38 T 15-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 NJ56_05405 d1ec5fc284144667fb4787ac9bb6e9e8 108 PIRSF PIRSF000077 2 108 3.5E-44 T 15-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 NJ56_05405 d1ec5fc284144667fb4787ac9bb6e9e8 108 PRINTS PR00421 Thioredoxin family signature 24 32 8.3E-10 T 15-10-2018 NJ56_05405 d1ec5fc284144667fb4787ac9bb6e9e8 108 PRINTS PR00421 Thioredoxin family signature 72 83 8.3E-10 T 15-10-2018 NJ56_05405 d1ec5fc284144667fb4787ac9bb6e9e8 108 PRINTS PR00421 Thioredoxin family signature 32 41 8.3E-10 T 15-10-2018 NJ56_07020 f02a52998fea1965411008436808ece6 336 Gene3D G3DSA:1.20.910.10 96 318 5.1E-27 T 15-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 NJ56_07020 f02a52998fea1965411008436808ece6 336 SUPERFAMILY SSF48613 98 294 2.47E-11 T 15-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 NJ56_07020 f02a52998fea1965411008436808ece6 336 SUPERFAMILY SSF46785 42 106 3.56E-5 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_12380 8ec40be5a281905dee509b6ffafd4f6b 262 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_12380 8ec40be5a281905dee509b6ffafd4f6b 262 Gene3D G3DSA:3.40.50.300 5 254 5.1E-58 T 15-10-2018 NJ56_12380 8ec40be5a281905dee509b6ffafd4f6b 262 SMART SM00382 30 215 3.9E-15 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_12380 8ec40be5a281905dee509b6ffafd4f6b 262 SUPERFAMILY SSF52540 5 228 4.6E-51 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_12380 8ec40be5a281905dee509b6ffafd4f6b 262 Pfam PF00005 ABC transporter 22 165 2.0E-27 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_00175 d0b42434a66678a8863150802e417609 263 SUPERFAMILY SSF46785 2 103 1.54E-25 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_00175 d0b42434a66678a8863150802e417609 263 Gene3D G3DSA:1.10.10.10 1 107 3.5E-35 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_00175 d0b42434a66678a8863150802e417609 263 Gene3D G3DSA:2.40.50.100 183 253 1.4E-19 T 15-10-2018 NJ56_00175 d0b42434a66678a8863150802e417609 263 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 83 2.7E-13 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_00175 d0b42434a66678a8863150802e417609 263 SUPERFAMILY SSF50331 170 259 2.34E-15 T 15-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal NJ56_00175 d0b42434a66678a8863150802e417609 263 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 122 191 1.2E-26 T 15-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 NJ56_00175 d0b42434a66678a8863150802e417609 263 SUPERFAMILY SSF50331 122 191 5.35E-20 T 15-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal NJ56_00175 d0b42434a66678a8863150802e417609 263 Pfam PF03459 TOBE domain 196 259 2.0E-12 T 15-10-2018 IPR005116 Transport-associated OB, type 1 NJ56_00175 d0b42434a66678a8863150802e417609 263 Pfam PF03459 TOBE domain 124 188 1.5E-16 T 15-10-2018 IPR005116 Transport-associated OB, type 1 NJ56_00175 d0b42434a66678a8863150802e417609 263 PIRSF PIRSF005763 1 263 1.7E-97 T 15-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 NJ56_00175 d0b42434a66678a8863150802e417609 263 Gene3D G3DSA:2.40.50.100 108 182 3.4E-25 T 15-10-2018 NJ56_00175 d0b42434a66678a8863150802e417609 263 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 16 112 1.4E-37 T 15-10-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 SUPERFAMILY SSF55681 100 464 1.77E-96 T 15-10-2018 NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 Gene3D G3DSA:2.40.50.140 2 104 5.8E-21 T 15-10-2018 NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 2.0E-11 T 15-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 SUPERFAMILY SSF50249 15 102 1.81E-17 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 3.2E-14 T 15-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 3.2E-14 T 15-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 3.2E-14 T 15-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 3.2E-14 T 15-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 Gene3D G3DSA:3.30.930.10 109 465 9.4E-110 T 15-10-2018 NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 46.509 T 15-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 9.8E-209 T 15-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 NJ56_16815 14a5bd9873c33ee653f89c12ffcf9f94 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 4.3E-83 T 15-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_09385 0b8b107a153dbe3f4e3eb1b0e10d0b4c 503 SUPERFAMILY SSF160246 11 75 2.01E-9 T 15-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily NJ56_09385 0b8b107a153dbe3f4e3eb1b0e10d0b4c 503 Gene3D G3DSA:3.40.50.300 222 502 5.6E-113 T 15-10-2018 NJ56_09385 0b8b107a153dbe3f4e3eb1b0e10d0b4c 503 Pfam PF00437 Type II/IV secretion system protein 123 388 3.9E-88 T 15-10-2018 IPR001482 Type II/IV secretion system protein NJ56_09385 0b8b107a153dbe3f4e3eb1b0e10d0b4c 503 SUPERFAMILY SSF52540 102 495 1.97E-96 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09385 0b8b107a153dbe3f4e3eb1b0e10d0b4c 503 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 316 330 - T 15-10-2018 IPR001482 Type II/IV secretion system protein NJ56_09385 0b8b107a153dbe3f4e3eb1b0e10d0b4c 503 Gene3D G3DSA:3.30.450.90 89 221 1.7E-50 T 15-10-2018 NJ56_09385 0b8b107a153dbe3f4e3eb1b0e10d0b4c 503 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 12 495 4.7E-197 T 15-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 NJ56_09385 0b8b107a153dbe3f4e3eb1b0e10d0b4c 503 Gene3D G3DSA:3.30.300.160 5 88 5.7E-10 T 15-10-2018 NJ56_09385 0b8b107a153dbe3f4e3eb1b0e10d0b4c 503 SMART SM00382 249 367 9.7E-4 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_00405 fa1f4a3ee1792840b9c327996380adf6 218 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 211 2.2E-88 T 15-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 NJ56_00405 fa1f4a3ee1792840b9c327996380adf6 218 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 6 202 9.0E-66 T 15-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D NJ56_00405 fa1f4a3ee1792840b9c327996380adf6 218 SMART SM00796 4 202 3.5E-89 T 15-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D NJ56_00405 fa1f4a3ee1792840b9c327996380adf6 218 Gene3D G3DSA:2.40.100.10 87 217 2.5E-53 T 15-10-2018 IPR029000 Cyclophilin-like domain superfamily NJ56_00405 fa1f4a3ee1792840b9c327996380adf6 218 SUPERFAMILY SSF50891 89 214 3.38E-42 T 15-10-2018 IPR029000 Cyclophilin-like domain superfamily NJ56_00405 fa1f4a3ee1792840b9c327996380adf6 218 SUPERFAMILY SSF160467 5 92 1.44E-9 T 15-10-2018 NJ56_03190 a09af643ac63765b1fc95636d1babb34 346 Pfam PF05175 Methyltransferase small domain 166 333 4.3E-58 T 15-10-2018 IPR007848 Methyltransferase small domain GO:0008168 NJ56_03190 a09af643ac63765b1fc95636d1babb34 346 Gene3D G3DSA:3.40.50.150 159 341 4.0E-46 T 15-10-2018 NJ56_03190 a09af643ac63765b1fc95636d1babb34 346 Pfam PF08468 Methyltransferase small domain N-terminal 8 162 6.5E-59 T 15-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 NJ56_03190 a09af643ac63765b1fc95636d1babb34 346 Gene3D G3DSA:3.40.50.150 1 158 3.5E-58 T 15-10-2018 NJ56_03190 a09af643ac63765b1fc95636d1babb34 346 SUPERFAMILY SSF53335 154 315 9.41E-28 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_03190 a09af643ac63765b1fc95636d1babb34 346 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 265 271 - T 15-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NJ56_03190 a09af643ac63765b1fc95636d1babb34 346 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 4 336 45.355 T 15-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 NJ56_17000 9df964ca8721e781941746362bc18521 588 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_17000 9df964ca8721e781941746362bc18521 588 Gene3D G3DSA:1.20.1560.10 2 334 1.5E-46 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_17000 9df964ca8721e781941746362bc18521 588 Pfam PF00664 ABC transporter transmembrane region 26 292 5.6E-38 T 15-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 NJ56_17000 9df964ca8721e781941746362bc18521 588 SUPERFAMILY SSF52540 361 582 1.02E-61 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17000 9df964ca8721e781941746362bc18521 588 Pfam PF00005 ABC transporter 369 514 1.1E-26 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_17000 9df964ca8721e781941746362bc18521 588 Gene3D G3DSA:3.40.50.300 344 587 7.5E-68 T 15-10-2018 NJ56_17000 9df964ca8721e781941746362bc18521 588 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 21 556 8.4E-200 T 15-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 NJ56_17000 9df964ca8721e781941746362bc18521 588 SMART SM00382 375 560 3.3E-14 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17000 9df964ca8721e781941746362bc18521 588 SUPERFAMILY SSF90123 11 330 8.11E-54 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_07875 7a496b12298c210e08a56773beb8b295 397 SUPERFAMILY SSF53383 1 395 6.96E-115 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_07875 7a496b12298c210e08a56773beb8b295 397 Gene3D G3DSA:3.40.640.10 60 301 3.2E-154 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_07875 7a496b12298c210e08a56773beb8b295 397 PRINTS PR00799 Aspartate aminotransferase signature 274 299 6.1E-37 T 15-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 NJ56_07875 7a496b12298c210e08a56773beb8b295 397 PRINTS PR00799 Aspartate aminotransferase signature 342 360 6.1E-37 T 15-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 NJ56_07875 7a496b12298c210e08a56773beb8b295 397 PRINTS PR00799 Aspartate aminotransferase signature 176 195 6.1E-37 T 15-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 NJ56_07875 7a496b12298c210e08a56773beb8b295 397 PRINTS PR00799 Aspartate aminotransferase signature 207 219 6.1E-37 T 15-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 NJ56_07875 7a496b12298c210e08a56773beb8b295 397 Pfam PF00155 Aminotransferase class I and II 27 393 1.9E-80 T 15-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NJ56_07875 7a496b12298c210e08a56773beb8b295 397 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 15-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 NJ56_07875 7a496b12298c210e08a56773beb8b295 397 Gene3D G3DSA:3.90.1150.10 11 392 3.2E-154 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_05960 877113766679ad3ce6e4017b36aa22f8 288 Pfam PF00378 Enoyl-CoA hydratase/isomerase 71 207 2.1E-14 T 15-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 NJ56_05960 877113766679ad3ce6e4017b36aa22f8 288 Gene3D G3DSA:3.90.226.10 1 226 2.5E-80 T 15-10-2018 NJ56_05960 877113766679ad3ce6e4017b36aa22f8 288 SUPERFAMILY SSF52096 23 255 5.2E-31 T 15-10-2018 IPR029045 ClpP/crotonase-like domain superfamily NJ56_11665 e2619f1e8fd02e14558201e29f96d8da 308 Pfam PF03466 LysR substrate binding domain 97 249 8.4E-29 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_11665 e2619f1e8fd02e14558201e29f96d8da 308 SUPERFAMILY SSF53850 96 252 2.79E-30 T 15-10-2018 NJ56_11665 e2619f1e8fd02e14558201e29f96d8da 308 Gene3D G3DSA:3.40.190.10 103 269 2.4E-59 T 15-10-2018 NJ56_11665 e2619f1e8fd02e14558201e29f96d8da 308 Gene3D G3DSA:1.10.10.10 8 92 9.4E-24 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_11665 e2619f1e8fd02e14558201e29f96d8da 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 2.4E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_11665 e2619f1e8fd02e14558201e29f96d8da 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 2.4E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_11665 e2619f1e8fd02e14558201e29f96d8da 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 2.4E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_11665 e2619f1e8fd02e14558201e29f96d8da 308 SUPERFAMILY SSF46785 11 119 1.04E-21 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_11665 e2619f1e8fd02e14558201e29f96d8da 308 Gene3D G3DSA:3.40.190.10 169 262 2.4E-59 T 15-10-2018 NJ56_11665 e2619f1e8fd02e14558201e29f96d8da 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 7.0E-18 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 Gene3D G3DSA:1.10.579.10 293 474 2.9E-82 T 15-10-2018 NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 SUPERFAMILY SSF52425 3 198 1.96E-51 T 15-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 325 337 - T 15-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 Pfam PF00875 DNA photolyase 5 174 2.9E-39 T 15-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 SUPERFAMILY SSF48173 191 472 1.57E-107 T 15-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 Gene3D G3DSA:1.25.40.80 133 289 1.2E-75 T 15-10-2018 NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 345 364 - T 15-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 Gene3D G3DSA:3.40.50.620 5 204 1.2E-75 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 Pfam PF03441 FAD binding domain of DNA photolyase 275 469 2.9E-81 T 15-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 PRINTS PR00147 DNA photolyase signature 345 363 1.2E-30 T 15-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 PRINTS PR00147 DNA photolyase signature 384 398 1.2E-30 T 15-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 PRINTS PR00147 DNA photolyase signature 144 160 1.2E-30 T 15-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 NJ56_00420 1f4331d6ede5f5dda0642c85bbdad0f5 479 PRINTS PR00147 DNA photolyase signature 325 341 1.2E-30 T 15-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 NJ56_02960 4e503004e260dd3d2efbefdb1f0ae425 169 Pfam PF01252 Signal peptidase (SPase) II 16 154 3.9E-38 T 15-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 NJ56_02960 4e503004e260dd3d2efbefdb1f0ae425 169 TIGRFAM TIGR00077 lspA: signal peptidase II 2 159 2.3E-51 T 15-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 NJ56_02960 4e503004e260dd3d2efbefdb1f0ae425 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 101 116 1.9E-18 T 15-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 NJ56_02960 4e503004e260dd3d2efbefdb1f0ae425 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 137 153 1.9E-18 T 15-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 NJ56_02960 4e503004e260dd3d2efbefdb1f0ae425 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 53 61 1.9E-18 T 15-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 NJ56_02960 4e503004e260dd3d2efbefdb1f0ae425 169 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 162 17.461 T 15-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 NJ56_02960 4e503004e260dd3d2efbefdb1f0ae425 169 ProSitePatterns PS00855 Signal peptidases II signature. 104 116 - T 15-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 Gene3D G3DSA:1.10.287.950 216 518 3.4E-98 T 15-10-2018 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 SMART SM00304 216 268 4.4E-13 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 Pfam PF02203 Tar ligand binding domain homologue 1 175 1.9E-50 T 15-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 SUPERFAMILY SSF47170 25 181 4.45E-44 T 15-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 3.7E-89 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 3.7E-89 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 3.7E-89 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 3.7E-89 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 3.7E-89 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 3.7E-89 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 3.7E-89 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 SMART SM00283 269 516 2.9E-95 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 15-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 Gene3D G3DSA:1.20.120.30 22 193 5.7E-58 T 15-10-2018 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 SMART SM00319 44 182 1.4E-42 T 15-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 484 4.3E-59 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 Pfam PF00672 HAMP domain 218 263 4.6E-11 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_12805 fded4118db69cd15c657953d15d44a1b 555 SUPERFAMILY SSF58104 236 519 1.28E-75 T 15-10-2018 NJ56_02265 5c6aa767f9ef16bd1b35183eb8e44860 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 205 1.2E-8 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_02265 5c6aa767f9ef16bd1b35183eb8e44860 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 205 217 1.2E-8 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_02265 5c6aa767f9ef16bd1b35183eb8e44860 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 189 1.2E-8 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_02265 5c6aa767f9ef16bd1b35183eb8e44860 234 SUPERFAMILY SSF46894 170 233 2.52E-16 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_02265 5c6aa767f9ef16bd1b35183eb8e44860 234 SMART SM00448 7 146 2.0E-9 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_02265 5c6aa767f9ef16bd1b35183eb8e44860 234 Pfam PF00196 Bacterial regulatory proteins, luxR family 174 228 1.8E-14 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_02265 5c6aa767f9ef16bd1b35183eb8e44860 234 Gene3D G3DSA:1.10.10.10 150 234 8.7E-18 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_02265 5c6aa767f9ef16bd1b35183eb8e44860 234 SMART SM00421 172 229 2.0E-11 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_02265 5c6aa767f9ef16bd1b35183eb8e44860 234 Gene3D G3DSA:3.40.50.2300 1 149 4.1E-18 T 15-10-2018 NJ56_02265 5c6aa767f9ef16bd1b35183eb8e44860 234 SUPERFAMILY SSF52172 5 157 1.2E-16 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_02265 5c6aa767f9ef16bd1b35183eb8e44860 234 Pfam PF00072 Response regulator receiver domain 35 143 1.5E-12 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 SMART SM00448 7 118 6.9E-34 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 15-10-2018 IPR025944 Sigma-54 interaction domain, conserved site NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 Gene3D G3DSA:3.40.50.300 132 307 1.1E-62 T 15-10-2018 NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 Gene3D G3DSA:1.10.10.60 387 441 5.8E-10 T 15-10-2018 NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 Pfam PF00072 Response regulator receiver domain 10 118 3.3E-30 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 SUPERFAMILY SSF52540 137 381 6.77E-70 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 SMART SM00382 157 300 1.0E-10 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 SUPERFAMILY SSF46689 388 438 1.08E-7 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 Pfam PF00158 Sigma-54 interaction domain 137 303 4.8E-71 T 15-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 223 238 - T 15-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 161 174 - T 15-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 Gene3D G3DSA:1.10.8.60 308 386 4.5E-22 T 15-10-2018 NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 Gene3D G3DSA:3.40.50.2300 4 131 1.6E-36 T 15-10-2018 NJ56_10445 08fff6e8bccdfd6824b0c16f940c7070 445 SUPERFAMILY SSF52172 6 181 2.99E-43 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_16395 0e12eba0c0c138808a6bb40104912aa9 223 Gene3D G3DSA:3.40.50.2300 1 121 7.0E-40 T 15-10-2018 NJ56_16395 0e12eba0c0c138808a6bb40104912aa9 223 SUPERFAMILY SSF52172 1 175 4.13E-39 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_16395 0e12eba0c0c138808a6bb40104912aa9 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 2.6E-21 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_16395 0e12eba0c0c138808a6bb40104912aa9 223 Gene3D G3DSA:1.10.10.10 123 223 6.7E-27 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_16395 0e12eba0c0c138808a6bb40104912aa9 223 SMART SM00448 1 112 3.4E-39 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_16395 0e12eba0c0c138808a6bb40104912aa9 223 SMART SM00862 145 220 2.8E-20 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_16395 0e12eba0c0c138808a6bb40104912aa9 223 Pfam PF00072 Response regulator receiver domain 3 112 3.7E-26 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00710 17a455d984f17ac50092dbbefbe30733 66 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 66 18.927 T 15-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 NJ56_00710 17a455d984f17ac50092dbbefbe30733 66 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 1.3E-18 T 15-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 NJ56_00710 17a455d984f17ac50092dbbefbe30733 66 Pfam PF02416 mttA/Hcf106 family 4 48 1.3E-11 T 15-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 NJ56_00710 17a455d984f17ac50092dbbefbe30733 66 Hamap MF_00903 Probable Sec-independent protein translocase protein TatE [tatE]. 1 66 27.345 T 15-10-2018 IPR024905 Sec-independent protein translocase protein TatE NJ56_01460 b9a598726afeefa184b9284a6268d5a9 456 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 31 415 1.3E-136 T 15-10-2018 NJ56_01460 b9a598726afeefa184b9284a6268d5a9 456 SUPERFAMILY SSF103473 1 436 3.01E-74 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_01460 b9a598726afeefa184b9284a6268d5a9 456 Pfam PF07690 Major Facilitator Superfamily 30 398 4.7E-46 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_01460 b9a598726afeefa184b9284a6268d5a9 456 ProSitePatterns PS00942 glpT family of transporters signature. 146 162 - T 15-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 NJ56_01460 b9a598726afeefa184b9284a6268d5a9 456 Gene3D G3DSA:1.20.1250.20 15 219 5.5E-44 T 15-10-2018 NJ56_01460 b9a598726afeefa184b9284a6268d5a9 456 Gene3D G3DSA:1.20.1250.20 241 435 4.8E-42 T 15-10-2018 NJ56_01460 b9a598726afeefa184b9284a6268d5a9 456 PIRSF PIRSF002808 1 450 5.8E-106 T 15-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 NJ56_07870 258260356e2307fee52f2838326fcb95 359 SMART SM01005 233 357 1.6E-61 T 15-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 Pfam PF00842 Alanine racemase, C-terminal domain 234 356 3.1E-39 T 15-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 15-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 SUPERFAMILY SSF50621 226 358 1.57E-43 T 15-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 NJ56_07870 258260356e2307fee52f2838326fcb95 359 Gene3D G3DSA:2.40.37.10 8 352 6.1E-133 T 15-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 NJ56_07870 258260356e2307fee52f2838326fcb95 359 SUPERFAMILY SSF51419 8 234 4.36E-70 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_07870 258260356e2307fee52f2838326fcb95 359 Gene3D G3DSA:3.20.20.10 10 217 6.1E-133 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_07870 258260356e2307fee52f2838326fcb95 359 Hamap MF_01201 Alanine racemase. 1 357 34.941 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 2.4E-71 T 15-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 TIGRFAM TIGR00492 alr: alanine racemase 3 357 1.6E-136 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 PRINTS PR00992 Alanine racemase signature 155 166 3.6E-72 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 PRINTS PR00992 Alanine racemase signature 192 219 3.6E-72 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 PRINTS PR00992 Alanine racemase signature 339 352 3.6E-72 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 PRINTS PR00992 Alanine racemase signature 249 264 3.6E-72 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 PRINTS PR00992 Alanine racemase signature 287 304 3.6E-72 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 PRINTS PR00992 Alanine racemase signature 60 78 3.6E-72 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 PRINTS PR00992 Alanine racemase signature 120 132 3.6E-72 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 PRINTS PR00992 Alanine racemase signature 26 42 3.6E-72 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_07870 258260356e2307fee52f2838326fcb95 359 PRINTS PR00992 Alanine racemase signature 266 281 3.6E-72 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_11165 ffc734f9a22387675604566e7a39a223 320 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 313 24.991 T 15-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 NJ56_11165 ffc734f9a22387675604566e7a39a223 320 SMART SM00771 181 311 2.1E-77 T 15-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 NJ56_11165 ffc734f9a22387675604566e7a39a223 320 Gene3D G3DSA:3.30.1400.10 179 319 2.0E-54 T 15-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 NJ56_11165 ffc734f9a22387675604566e7a39a223 320 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 184 310 4.8E-49 T 15-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 NJ56_11165 ffc734f9a22387675604566e7a39a223 320 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 190 318 4.0E-68 T 15-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 NJ56_11165 ffc734f9a22387675604566e7a39a223 320 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 4 311 1.1E-83 T 15-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 NJ56_11165 ffc734f9a22387675604566e7a39a223 320 SUPERFAMILY SSF64383 182 315 3.14E-48 T 15-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 NJ56_16575 3770b381435ad22e40c4d22895ab056d 1153 Pfam PF00575 S1 RNA binding domain 36 118 1.4E-16 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_16575 3770b381435ad22e40c4d22895ab056d 1153 Pfam PF12111 Polyribonucleotide phosphorylase C terminal 1118 1150 6.8E-16 T 15-10-2018 IPR021968 Polyribonucleotide phosphorylase C-terminal NJ56_16575 3770b381435ad22e40c4d22895ab056d 1153 Gene3D G3DSA:3.40.1260.20 401 510 1.1E-42 T 15-10-2018 NJ56_16575 3770b381435ad22e40c4d22895ab056d 1153 SMART SM00316 37 119 9.6E-13 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_16575 3770b381435ad22e40c4d22895ab056d 1153 Gene3D G3DSA:2.40.50.140 32 125 1.2E-33 T 15-10-2018 NJ56_16575 3770b381435ad22e40c4d22895ab056d 1153 Pfam PF10150 Ribonuclease E/G family 121 391 1.3E-91 T 15-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 NJ56_16575 3770b381435ad22e40c4d22895ab056d 1153 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 425 7.5E-169 T 15-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 NJ56_16575 3770b381435ad22e40c4d22895ab056d 1153 SUPERFAMILY SSF50249 40 124 1.18E-20 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_16575 3770b381435ad22e40c4d22895ab056d 1153 Hamap MF_00970 Ribonuclease E [rne]. 1 1139 38.444 T 15-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 NJ56_06155 79c1c0cead6c5c4dbdaebf4fe47bcf5b 308 PRINTS PR00990 Ribokinase signature 35 54 2.2E-37 T 15-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 NJ56_06155 79c1c0cead6c5c4dbdaebf4fe47bcf5b 308 PRINTS PR00990 Ribokinase signature 175 190 2.2E-37 T 15-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 NJ56_06155 79c1c0cead6c5c4dbdaebf4fe47bcf5b 308 PRINTS PR00990 Ribokinase signature 8 29 2.2E-37 T 15-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 NJ56_06155 79c1c0cead6c5c4dbdaebf4fe47bcf5b 308 PRINTS PR00990 Ribokinase signature 219 230 2.2E-37 T 15-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 NJ56_06155 79c1c0cead6c5c4dbdaebf4fe47bcf5b 308 PRINTS PR00990 Ribokinase signature 107 120 2.2E-37 T 15-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 NJ56_06155 79c1c0cead6c5c4dbdaebf4fe47bcf5b 308 SUPERFAMILY SSF53613 5 304 1.51E-83 T 15-10-2018 IPR029056 Ribokinase-like NJ56_06155 79c1c0cead6c5c4dbdaebf4fe47bcf5b 308 Hamap MF_01987 Ribokinase [rbsK]. 4 303 26.226 T 15-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 NJ56_06155 79c1c0cead6c5c4dbdaebf4fe47bcf5b 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 15-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 NJ56_06155 79c1c0cead6c5c4dbdaebf4fe47bcf5b 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 7 301 8.0E-112 T 15-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 NJ56_06155 79c1c0cead6c5c4dbdaebf4fe47bcf5b 308 Pfam PF00294 pfkB family carbohydrate kinase 5 296 2.3E-76 T 15-10-2018 IPR011611 Carbohydrate kinase PfkB NJ56_06155 79c1c0cead6c5c4dbdaebf4fe47bcf5b 308 Gene3D G3DSA:3.40.1190.20 3 302 2.9E-102 T 15-10-2018 IPR029056 Ribokinase-like NJ56_02445 bfbf4451e9e08c2fcb540646cf2557d2 114 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 114 36.467 T 15-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 NJ56_02445 bfbf4451e9e08c2fcb540646cf2557d2 114 SUPERFAMILY SSF89360 8 103 5.69E-31 T 15-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 NJ56_02445 bfbf4451e9e08c2fcb540646cf2557d2 114 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 95 112 - T 15-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 NJ56_02445 bfbf4451e9e08c2fcb540646cf2557d2 114 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 9 113 6.2E-39 T 15-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 NJ56_02445 bfbf4451e9e08c2fcb540646cf2557d2 114 Gene3D G3DSA:2.60.300.12 9 114 5.3E-34 T 15-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 NJ56_02445 bfbf4451e9e08c2fcb540646cf2557d2 114 Pfam PF01521 Iron-sulphur cluster biosynthesis 9 109 2.0E-20 T 15-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 NJ56_14465 b3361f3e66558cc860b3aa85b621d153 406 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 7 405 4.6E-177 T 15-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 NJ56_14465 b3361f3e66558cc860b3aa85b621d153 406 SUPERFAMILY SSF53383 4 401 4.37E-124 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_14465 b3361f3e66558cc860b3aa85b621d153 406 Gene3D G3DSA:3.90.1150.10 8 398 1.4E-166 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_14465 b3361f3e66558cc860b3aa85b621d153 406 Gene3D G3DSA:3.40.640.10 36 297 1.4E-166 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_14465 b3361f3e66558cc860b3aa85b621d153 406 Pfam PF00266 Aminotransferase class-V 26 394 1.2E-152 T 15-10-2018 IPR000192 Aminotransferase class V domain NJ56_14465 b3361f3e66558cc860b3aa85b621d153 406 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 217 236 - T 15-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site NJ56_03495 ec2436064e72372e5f590d5562b4911d 360 SUPERFAMILY SSF52540 101 304 2.46E-39 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03495 ec2436064e72372e5f590d5562b4911d 360 SMART SM00382 123 255 1.6E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_03495 ec2436064e72372e5f590d5562b4911d 360 Gene3D G3DSA:3.40.50.300 95 269 4.8E-39 T 15-10-2018 NJ56_03495 ec2436064e72372e5f590d5562b4911d 360 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 128 252 4.6E-28 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_17260 c4d6972c2e15829f971a421cd10fc578 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 35.339 T 15-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 NJ56_17260 c4d6972c2e15829f971a421cd10fc578 245 SUPERFAMILY SSF51366 1 242 3.63E-65 T 15-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 NJ56_17260 c4d6972c2e15829f971a421cd10fc578 245 Pfam PF00977 Histidine biosynthesis protein 1 233 1.4E-76 T 15-10-2018 IPR006062 Histidine biosynthesis GO:0000105 NJ56_17260 c4d6972c2e15829f971a421cd10fc578 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 238 1.1E-78 T 15-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 NJ56_17260 c4d6972c2e15829f971a421cd10fc578 245 Gene3D G3DSA:3.20.20.70 1 245 1.5E-94 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_08050 a330bba084391b5a493829b7241041ba 311 Pfam PF13533 Biotin-lipoyl like 47 95 1.8E-17 T 15-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain NJ56_08050 a330bba084391b5a493829b7241041ba 311 Pfam PF13437 HlyD family secretion protein 156 241 2.1E-11 T 15-10-2018 NJ56_08050 a330bba084391b5a493829b7241041ba 311 Gene3D G3DSA:2.40.30.170 171 296 1.3E-20 T 15-10-2018 NJ56_08050 a330bba084391b5a493829b7241041ba 311 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 242 8.8E-28 T 15-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 NJ56_08050 a330bba084391b5a493829b7241041ba 311 Hamap MF_01544 p-hydroxybenzoic acid efflux pump subunit AaeA [aaeA]. 1 311 55.048 T 15-10-2018 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA NJ56_08050 a330bba084391b5a493829b7241041ba 311 Gene3D G3DSA:2.40.50.100 47 111 6.1E-11 T 15-10-2018 NJ56_08050 a330bba084391b5a493829b7241041ba 311 SUPERFAMILY SSF111369 46 202 1.31E-19 T 15-10-2018 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 PIRSF PIRSF002158 12 274 2.5E-100 T 15-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.334 T 15-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 15-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 Gene3D G3DSA:4.10.950.10 196 273 5.2E-37 T 15-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 SUPERFAMILY SSF50249 2 125 1.1E-50 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 3.9E-34 T 15-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 SMART SM01382 124 251 4.1E-90 T 15-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 1.1E-131 T 15-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 Gene3D G3DSA:2.40.50.140 1 114 4.6E-51 T 15-10-2018 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 3.0E-55 T 15-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 Gene3D G3DSA:2.30.30.30 115 195 4.3E-33 T 15-10-2018 IPR014722 Ribosomal protein L2, domain 2 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 SMART SM01383 42 118 3.6E-48 T 15-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07380 6217cbf14a2732c102ed6fdcb7193770 274 SUPERFAMILY SSF50104 127 269 1.08E-59 T 15-10-2018 IPR008991 Translation protein SH3-like domain superfamily NJ56_07250 df5753e930b2b20cb98a612227f31f99 326 Pfam PF00561 alpha/beta hydrolase fold 62 298 2.2E-21 T 15-10-2018 IPR000073 Alpha/beta hydrolase fold-1 NJ56_07250 df5753e930b2b20cb98a612227f31f99 326 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 226 267 - T 15-10-2018 IPR000952 AB hydrolase 4, conserved site NJ56_07250 df5753e930b2b20cb98a612227f31f99 326 Gene3D G3DSA:3.40.50.1820 44 325 1.1E-24 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_07250 df5753e930b2b20cb98a612227f31f99 326 SUPERFAMILY SSF53474 26 299 1.09E-40 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_07250 df5753e930b2b20cb98a612227f31f99 326 PIRSF PIRSF005211 2 326 1.0E-102 T 15-10-2018 IPR012020 AB hydrolase 4 family NJ56_02620 7273bff7d2bdfa4c97aa4c13fe916382 183 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 29 166 7.9E-28 T 15-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_02620 7273bff7d2bdfa4c97aa4c13fe916382 183 Gene3D G3DSA:3.40.80.10 1 179 1.7E-58 T 15-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_02620 7273bff7d2bdfa4c97aa4c13fe916382 183 SUPERFAMILY SSF55846 2 179 1.28E-68 T 15-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_02620 7273bff7d2bdfa4c97aa4c13fe916382 183 SMART SM00644 16 166 1.8E-57 T 15-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_00360 01baebec437db39f935ef67780b93499 115 Gene3D G3DSA:1.20.1300.10 1 115 1.8E-30 T 15-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00360 01baebec437db39f935ef67780b93499 115 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 113 7.9E-36 T 15-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 NJ56_00360 01baebec437db39f935ef67780b93499 115 PIRSF PIRSF000169 1 115 3.8E-41 T 15-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 NJ56_00360 01baebec437db39f935ef67780b93499 115 SUPERFAMILY SSF81343 5 114 3.92E-29 T 15-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_10985 2c6b39b04e6f2e42215184743b30915c 150 Gene3D G3DSA:1.10.1130.10 63 130 2.8E-29 T 15-10-2018 NJ56_10985 2c6b39b04e6f2e42215184743b30915c 150 PIRSF PIRSF006105 3 150 8.3E-54 T 15-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB NJ56_10985 2c6b39b04e6f2e42215184743b30915c 150 SUPERFAMILY SSF48695 49 145 3.71E-41 T 15-10-2018 IPR036280 Multiheme cytochrome superfamily NJ56_10985 2c6b39b04e6f2e42215184743b30915c 150 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 36 143 8.4E-46 T 15-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB NJ56_07535 46f8f1520d29d658c8029c1ef3567ff8 373 Pfam PF02481 DNA recombination-mediator protein A 68 274 5.6E-76 T 15-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 NJ56_07535 46f8f1520d29d658c8029c1ef3567ff8 373 SUPERFAMILY SSF102405 76 283 1.18E-41 T 15-10-2018 NJ56_07535 46f8f1520d29d658c8029c1ef3567ff8 373 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 65 281 2.1E-81 T 15-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 NJ56_07535 46f8f1520d29d658c8029c1ef3567ff8 373 Gene3D G3DSA:3.40.50.450 3 285 2.2E-87 T 15-10-2018 NJ56_17560 6583213db0548e63116cac6accd14087 287 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 16 282 7.2E-85 T 15-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 NJ56_17560 6583213db0548e63116cac6accd14087 287 SUPERFAMILY SSF161098 89 274 1.3E-31 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17560 6583213db0548e63116cac6accd14087 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 270 2.5E-15 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_17560 6583213db0548e63116cac6accd14087 287 Gene3D G3DSA:1.10.3720.10 85 283 2.3E-30 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_15120 c6cc83ab7266ef923fd4319920713659 293 Pfam PF09313 Domain of unknown function (DUF1971) 8 88 6.6E-29 T 15-10-2018 IPR015392 Domain of unknown function DUF1971 NJ56_15120 c6cc83ab7266ef923fd4319920713659 293 SUPERFAMILY SSF53335 101 263 7.63E-27 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_15120 c6cc83ab7266ef923fd4319920713659 293 Gene3D G3DSA:2.60.120.10 1 106 2.2E-38 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_15120 c6cc83ab7266ef923fd4319920713659 293 SUPERFAMILY SSF51197 1 101 9.06E-36 T 15-10-2018 NJ56_15120 c6cc83ab7266ef923fd4319920713659 293 TIGRFAM TIGR00477 tehB: tellurite resistance protein TehB 48 285 4.8E-106 T 15-10-2018 IPR004537 Tellurite resistance methyltransferase, TehB GO:0005737|GO:0008757|GO:0046690 NJ56_15120 c6cc83ab7266ef923fd4319920713659 293 Gene3D G3DSA:3.40.50.150 107 286 6.2E-40 T 15-10-2018 NJ56_15120 c6cc83ab7266ef923fd4319920713659 293 Pfam PF03848 Tellurite resistance protein TehB 90 282 5.0E-100 T 15-10-2018 IPR015985 Tellurite resistance methyltransferase TehB-like domain NJ56_15120 c6cc83ab7266ef923fd4319920713659 293 PIRSF PIRSF005215 1 287 7.6E-134 T 15-10-2018 IPR014431 Tellurite resistance methyltransferase, TehB type-2 NJ56_09900 32975bfffc7730ebc471279115ceeba5 143 Pfam PF00085 Thioredoxin 37 137 3.1E-27 T 15-10-2018 IPR013766 Thioredoxin domain GO:0045454 NJ56_09900 32975bfffc7730ebc471279115ceeba5 143 TIGRFAM TIGR01068 thioredoxin: thioredoxin 43 137 1.0E-34 T 15-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 NJ56_09900 32975bfffc7730ebc471279115ceeba5 143 Gene3D G3DSA:3.40.30.10 35 142 7.1E-34 T 15-10-2018 NJ56_09900 32975bfffc7730ebc471279115ceeba5 143 ProSitePatterns PS00194 Thioredoxin family active site. 56 74 - T 15-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 NJ56_09900 32975bfffc7730ebc471279115ceeba5 143 PIRSF PIRSF000077 35 139 3.5E-32 T 15-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 NJ56_09900 32975bfffc7730ebc471279115ceeba5 143 PRINTS PR00421 Thioredoxin family signature 63 72 2.3E-8 T 15-10-2018 NJ56_09900 32975bfffc7730ebc471279115ceeba5 143 PRINTS PR00421 Thioredoxin family signature 55 63 2.3E-8 T 15-10-2018 NJ56_09900 32975bfffc7730ebc471279115ceeba5 143 PRINTS PR00421 Thioredoxin family signature 103 114 2.3E-8 T 15-10-2018 NJ56_09900 32975bfffc7730ebc471279115ceeba5 143 SUPERFAMILY SSF52833 25 137 3.38E-37 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_09900 32975bfffc7730ebc471279115ceeba5 143 Gene3D G3DSA:2.20.28.140 1 34 2.6E-20 T 15-10-2018 NJ56_14100 d3d3f11d1696268f8e103ed913544d66 80 ProDom PD060427 YEBV CYTOPLASMIC Y1856 ESCHERICHIA ECS2546 YPO1694 COLI STY1982 SIMILAR 3 79 1.0E-27 T 15-10-2018 IPR009950 Protein of unknown function DUF1480 NJ56_14100 d3d3f11d1696268f8e103ed913544d66 80 Pfam PF07351 Protein of unknown function (DUF1480) 1 79 4.9E-40 T 15-10-2018 IPR009950 Protein of unknown function DUF1480 NJ56_04870 e6a24bd6ce568e29f208299c115da8eb 443 Gene3D G3DSA:3.40.350.10 1 159 7.9E-61 T 15-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal NJ56_04870 e6a24bd6ce568e29f208299c115da8eb 443 SUPERFAMILY SSF55920 163 438 2.09E-53 T 15-10-2018 IPR036005 Creatinase/aminopeptidase-like NJ56_04870 e6a24bd6ce568e29f208299c115da8eb 443 Pfam PF00557 Metallopeptidase family M24 168 430 3.0E-42 T 15-10-2018 IPR000994 Peptidase M24 NJ56_04870 e6a24bd6ce568e29f208299c115da8eb 443 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 1 443 58.239 T 15-10-2018 IPR022846 Xaa-Pro dipeptidase GO:0016795 NJ56_04870 e6a24bd6ce568e29f208299c115da8eb 443 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 335 347 - T 15-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site NJ56_04870 e6a24bd6ce568e29f208299c115da8eb 443 Gene3D G3DSA:3.90.230.10 161 443 4.9E-77 T 15-10-2018 NJ56_00810 6e683a3fc343d864f8fb06c465d0df44 387 SUPERFAMILY SSF51161 257 333 6.6E-11 T 15-10-2018 IPR011004 Trimeric LpxA-like superfamily NJ56_00810 6e683a3fc343d864f8fb06c465d0df44 387 Gene3D G3DSA:3.90.550.10 1 251 4.0E-65 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_00810 6e683a3fc343d864f8fb06c465d0df44 387 Pfam PF00483 Nucleotidyl transferase 2 246 1.4E-47 T 15-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 NJ56_00810 6e683a3fc343d864f8fb06c465d0df44 387 Gene3D G3DSA:2.160.10.10 259 345 3.0E-10 T 15-10-2018 NJ56_00810 6e683a3fc343d864f8fb06c465d0df44 387 SUPERFAMILY SSF53448 1 307 1.03E-66 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_00810 6e683a3fc343d864f8fb06c465d0df44 387 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 283 315 1.2E-4 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_13625 829c769e10d6a9dcb7ab3b96d7ccb403 531 TIGRFAM TIGR03813 put_Glu_GABA_T: putative glutamate/gamma-aminobutyrate antiporter 16 489 1.4E-265 T 15-10-2018 IPR022520 Putative glutamate/gamma-aminobutyrate antiporter NJ56_13625 829c769e10d6a9dcb7ab3b96d7ccb403 531 Pfam PF13520 Amino acid permease 22 456 1.5E-60 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_13625 829c769e10d6a9dcb7ab3b96d7ccb403 531 Gene3D G3DSA:1.20.1740.10 16 487 2.3E-34 T 15-10-2018 NJ56_13625 829c769e10d6a9dcb7ab3b96d7ccb403 531 PIRSF PIRSF006060 2 487 2.7E-53 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 Gene3D G3DSA:3.40.1160.10 16 299 5.3E-73 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 PIRSF PIRSF000727 13 811 2.2E-288 T 15-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 Gene3D G3DSA:3.30.360.10 620 790 2.6E-103 T 15-10-2018 NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 Pfam PF00696 Amino acid kinase family 13 285 4.9E-42 T 15-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 655 677 - T 15-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 Pfam PF00742 Homoserine dehydrogenase 609 804 3.5E-43 T 15-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 466 601 4.2E-22 T 15-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 16 454 9.0E-63 T 15-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 Gene3D G3DSA:3.40.50.720 461 807 2.6E-103 T 15-10-2018 NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 Gene3D G3DSA:1.20.120.1320 52 146 5.3E-73 T 15-10-2018 NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 SUPERFAMILY SSF51735 458 631 8.75E-32 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 SUPERFAMILY SSF53633 13 300 1.36E-57 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 ProSitePatterns PS00324 Aspartokinase signature. 15 23 - T 15-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_05670 d7ff2ce0e1dc2a92ef9162c6689a6f35 811 SUPERFAMILY SSF55347 609 792 1.24E-46 T 15-10-2018 NJ56_04645 8e66682d0ac64483256d51646cd95556 551 Pfam PF00474 Sodium:solute symporter family 64 470 2.6E-129 T 15-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 NJ56_04645 8e66682d0ac64483256d51646cd95556 551 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 179 204 - T 15-10-2018 IPR018212 Sodium/solute symporter, conserved site NJ56_04645 8e66682d0ac64483256d51646cd95556 551 Hamap MF_01426 Cation/acetate symporter ActP [actP]. 2 551 51.031 T 15-10-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 NJ56_04645 8e66682d0ac64483256d51646cd95556 551 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 452 472 - T 15-10-2018 IPR018212 Sodium/solute symporter, conserved site NJ56_04645 8e66682d0ac64483256d51646cd95556 551 Gene3D G3DSA:1.20.1730.10 51 546 4.4E-62 T 15-10-2018 IPR038377 Sodium/glucose symporter superfamily NJ56_04645 8e66682d0ac64483256d51646cd95556 551 TIGRFAM TIGR02711 symport_actP: cation/acetate symporter ActP 4 551 0.0 T 15-10-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 NJ56_04645 8e66682d0ac64483256d51646cd95556 551 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 64 469 1.2E-62 T 15-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 NJ56_08070 6d9ab4bfaf5c3f266e0db5f233494ea2 88 Pfam PF01337 Barstar (barnase inhibitor) 5 79 3.6E-10 T 15-10-2018 IPR000468 Barstar (barnase inhibitor) NJ56_08070 6d9ab4bfaf5c3f266e0db5f233494ea2 88 SUPERFAMILY SSF52038 1 87 2.09E-28 T 15-10-2018 IPR035905 Barstar-like superfamily NJ56_08070 6d9ab4bfaf5c3f266e0db5f233494ea2 88 Gene3D G3DSA:3.30.370.10 1 88 1.4E-35 T 15-10-2018 IPR035905 Barstar-like superfamily NJ56_10615 6322a62b7e956ee61df11e5e92d07bf3 377 Pfam PF04551 GcpE protein 14 354 1.4E-128 T 15-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 NJ56_10615 6322a62b7e956ee61df11e5e92d07bf3 377 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 364 34.033 T 15-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 NJ56_10615 6322a62b7e956ee61df11e5e92d07bf3 377 Gene3D G3DSA:3.20.20.20 1 261 2.2E-103 T 15-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_10615 6322a62b7e956ee61df11e5e92d07bf3 377 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 351 7.9E-122 T 15-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 NJ56_10615 6322a62b7e956ee61df11e5e92d07bf3 377 SUPERFAMILY SSF56014 266 334 9.16E-11 T 15-10-2018 NJ56_10615 6322a62b7e956ee61df11e5e92d07bf3 377 Gene3D G3DSA:3.30.413.10 262 361 1.5E-21 T 15-10-2018 NJ56_10615 6322a62b7e956ee61df11e5e92d07bf3 377 SUPERFAMILY SSF51717 16 207 1.73E-10 T 15-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_10615 6322a62b7e956ee61df11e5e92d07bf3 377 PIRSF PIRSF004640 1 364 9.1E-144 T 15-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 NJ56_05250 d6f80d85f85c9a8c9c933336ffb29180 720 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 3.7E-76 T 15-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 NJ56_05250 d6f80d85f85c9a8c9c933336ffb29180 720 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 3.2E-75 T 15-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 NJ56_05250 d6f80d85f85c9a8c9c933336ffb29180 720 SUPERFAMILY SSF52540 4 642 8.83E-183 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05250 d6f80d85f85c9a8c9c933336ffb29180 720 Gene3D G3DSA:3.40.50.300 281 636 1.4E-137 T 15-10-2018 NJ56_05250 d6f80d85f85c9a8c9c933336ffb29180 720 Gene3D G3DSA:3.40.50.300 10 274 6.7E-106 T 15-10-2018 NJ56_05250 d6f80d85f85c9a8c9c933336ffb29180 720 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 718 0.0 T 15-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 NJ56_05250 d6f80d85f85c9a8c9c933336ffb29180 720 Gene3D G3DSA:1.10.10.160 114 187 6.7E-106 T 15-10-2018 IPR013986 DExx box DNA helicase domain superfamily NJ56_05250 d6f80d85f85c9a8c9c933336ffb29180 720 Gene3D G3DSA:1.10.486.10 382 538 1.4E-137 T 15-10-2018 NJ56_17735 1921ab82fa30a226fc48a1d4da219527 415 Pfam PF03743 Bacterial conjugation TrbI-like protein 212 404 1.5E-13 T 15-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI NJ56_01490 98ed9a2808e72b1d12cc1f5fb4d41171 303 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 85 101 - T 15-10-2018 IPR033749 Polyprenyl synthetase, conserved site NJ56_01490 98ed9a2808e72b1d12cc1f5fb4d41171 303 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 219 231 - T 15-10-2018 IPR033749 Polyprenyl synthetase, conserved site NJ56_01490 98ed9a2808e72b1d12cc1f5fb4d41171 303 Pfam PF00348 Polyprenyl synthetase 36 269 1.0E-57 T 15-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 NJ56_01490 98ed9a2808e72b1d12cc1f5fb4d41171 303 SUPERFAMILY SSF48576 8 285 1.36E-86 T 15-10-2018 IPR008949 Isoprenoid synthase domain superfamily NJ56_01490 98ed9a2808e72b1d12cc1f5fb4d41171 303 Gene3D G3DSA:1.10.600.10 6 303 1.6E-104 T 15-10-2018 IPR008949 Isoprenoid synthase domain superfamily NJ56_09225 31e3aa10c91c9a877bbdd2e9ab7d71e2 297 Pfam PF03466 LysR substrate binding domain 93 289 7.0E-13 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_09225 31e3aa10c91c9a877bbdd2e9ab7d71e2 297 Gene3D G3DSA:3.40.190.290 89 295 2.8E-63 T 15-10-2018 NJ56_09225 31e3aa10c91c9a877bbdd2e9ab7d71e2 297 SUPERFAMILY SSF46785 4 110 3.31E-17 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_09225 31e3aa10c91c9a877bbdd2e9ab7d71e2 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 8.9E-8 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_09225 31e3aa10c91c9a877bbdd2e9ab7d71e2 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 8.9E-8 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_09225 31e3aa10c91c9a877bbdd2e9ab7d71e2 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 8.9E-8 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_09225 31e3aa10c91c9a877bbdd2e9ab7d71e2 297 Gene3D G3DSA:1.10.10.10 2 83 1.0E-25 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_09225 31e3aa10c91c9a877bbdd2e9ab7d71e2 297 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 5 293 8.0E-111 T 15-10-2018 IPR017685 HTH-type transcriptional regulator ArgP NJ56_09225 31e3aa10c91c9a877bbdd2e9ab7d71e2 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 6.5E-19 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_09225 31e3aa10c91c9a877bbdd2e9ab7d71e2 297 SUPERFAMILY SSF53850 92 290 3.26E-19 T 15-10-2018 NJ56_09225 31e3aa10c91c9a877bbdd2e9ab7d71e2 297 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 296 57.128 T 15-10-2018 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria NJ56_07185 a5bd636a8bcbed8275861c11ca1339b6 189 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 30 187 3.5E-47 T 15-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 NJ56_07185 a5bd636a8bcbed8275861c11ca1339b6 189 SUPERFAMILY SSF50891 27 188 1.1E-56 T 15-10-2018 IPR029000 Cyclophilin-like domain superfamily NJ56_07185 a5bd636a8bcbed8275861c11ca1339b6 189 Gene3D G3DSA:2.40.100.10 25 189 6.9E-69 T 15-10-2018 IPR029000 Cyclophilin-like domain superfamily NJ56_07185 a5bd636a8bcbed8275861c11ca1339b6 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 69 81 9.9E-11 T 15-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 NJ56_07185 a5bd636a8bcbed8275861c11ca1339b6 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 158 9.9E-11 T 15-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 NJ56_07185 a5bd636a8bcbed8275861c11ca1339b6 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 58 9.9E-11 T 15-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 NJ56_07185 a5bd636a8bcbed8275861c11ca1339b6 189 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 64 81 - T 15-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 NJ56_07185 a5bd636a8bcbed8275861c11ca1339b6 189 PIRSF PIRSF001467 13 187 6.4E-28 T 15-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 NJ56_12495 2f2d53d35af4f50bdc6b8136b99c6477 620 Pfam PF12696 TraM recognition site of TraD and TraG 418 493 6.7E-5 T 15-10-2018 IPR032689 TraD/TraG, TraM recognition site NJ56_12495 2f2d53d35af4f50bdc6b8136b99c6477 620 PIRSF PIRSF003273 1 614 1.1E-287 T 15-10-2018 IPR016387 Mobilization, MobA NJ56_12495 2f2d53d35af4f50bdc6b8136b99c6477 620 Gene3D G3DSA:3.40.50.300 127 282 1.2E-7 T 15-10-2018 NJ56_12495 2f2d53d35af4f50bdc6b8136b99c6477 620 Gene3D G3DSA:3.40.50.300 296 553 2.7E-19 T 15-10-2018 NJ56_12495 2f2d53d35af4f50bdc6b8136b99c6477 620 SUPERFAMILY SSF52540 151 535 4.04E-36 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06565 16f87f6e701fda3cb518d85e1ab1b649 321 Pfam PF13247 4Fe-4S dicluster domain 92 188 3.1E-25 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_06565 16f87f6e701fda3cb518d85e1ab1b649 321 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 290 5.3E-144 T 15-10-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 NJ56_06565 16f87f6e701fda3cb518d85e1ab1b649 321 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 133 144 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_06565 16f87f6e701fda3cb518d85e1ab1b649 321 PIRSF PIRSF036298 1 305 1.2E-166 T 15-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 NJ56_06565 16f87f6e701fda3cb518d85e1ab1b649 321 Pfam PF09163 Formate dehydrogenase N, transmembrane 246 288 8.8E-23 T 15-10-2018 IPR015246 Formate dehydrogenase, transmembrane NJ56_06565 16f87f6e701fda3cb518d85e1ab1b649 321 SUPERFAMILY SSF54862 28 273 9.31E-72 T 15-10-2018 NJ56_06565 16f87f6e701fda3cb518d85e1ab1b649 321 Gene3D G3DSA:1.20.5.480 247 295 3.8E-27 T 15-10-2018 IPR038384 Formate dehydrogenase, C-terminal domain superfamily NJ56_06565 16f87f6e701fda3cb518d85e1ab1b649 321 Gene3D G3DSA:3.30.70.20 18 162 3.7E-103 T 15-10-2018 NJ56_06565 16f87f6e701fda3cb518d85e1ab1b649 321 Gene3D G3DSA:3.30.70.20 28 227 3.7E-103 T 15-10-2018 NJ56_11685 253d9b7ff94cc047536bd3815a06fec6 172 PIRSF PIRSF000216 3 172 3.2E-53 T 15-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11685 253d9b7ff94cc047536bd3815a06fec6 172 Gene3D G3DSA:1.10.10.1590 18 88 5.4E-17 T 15-10-2018 NJ56_11685 253d9b7ff94cc047536bd3815a06fec6 172 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 129 147 - T 15-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11685 253d9b7ff94cc047536bd3815a06fec6 172 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 28 171 2.8E-52 T 15-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11685 253d9b7ff94cc047536bd3815a06fec6 172 SUPERFAMILY SSF52833 21 171 1.34E-48 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_11685 253d9b7ff94cc047536bd3815a06fec6 172 Gene3D G3DSA:3.40.30.10 89 171 4.0E-23 T 15-10-2018 NJ56_11685 253d9b7ff94cc047536bd3815a06fec6 172 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 30 171 3.0E-50 T 15-10-2018 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 101 368 2.7E-68 T 15-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 Gene3D G3DSA:2.40.37.10 39 591 2.5E-235 T 15-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 Gene3D G3DSA:1.20.58.930 387 482 2.5E-235 T 15-10-2018 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01180 Arginine decarboxylase signature 197 218 2.0E-72 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01180 Arginine decarboxylase signature 93 108 2.0E-72 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01180 Arginine decarboxylase signature 567 588 2.0E-72 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01180 Arginine decarboxylase signature 221 243 2.0E-72 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01180 Arginine decarboxylase signature 348 365 2.0E-72 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01180 Arginine decarboxylase signature 489 510 2.0E-72 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01180 Arginine decarboxylase signature 514 539 2.0E-72 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01180 Arginine decarboxylase signature 117 131 2.0E-72 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01180 Arginine decarboxylase signature 171 186 2.0E-72 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PIRSF PIRSF001336 17 659 4.4E-254 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 TIGRFAM TIGR01273 speA: arginine decarboxylase 32 657 1.4E-270 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 SUPERFAMILY SSF50621 482 588 5.93E-8 T 15-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 125 143 - T 15-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 302 315 - T 15-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 SUPERFAMILY SSF51419 93 370 1.96E-67 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 28 658 42.709 T 15-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 Gene3D G3DSA:3.20.20.10 94 370 2.5E-235 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 125 143 8.3E-19 T 15-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 358 377 8.3E-19 T 15-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 147 159 8.3E-19 T 15-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 264 277 8.3E-19 T 15-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 NJ56_09180 6c326dedbb83dd2e914e551a35ca72bf 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 567 580 8.3E-19 T 15-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 NJ56_00025 a0bdd0d32501d0cd9e2d4abe439c4c9a 453 SMART SM00490 259 340 2.3E-32 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_00025 a0bdd0d32501d0cd9e2d4abe439c4c9a 453 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 449 51.237 T 15-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 NJ56_00025 a0bdd0d32501d0cd9e2d4abe439c4c9a 453 Gene3D G3DSA:3.40.50.300 215 394 7.5E-51 T 15-10-2018 NJ56_00025 a0bdd0d32501d0cd9e2d4abe439c4c9a 453 Gene3D G3DSA:3.40.50.300 1 211 2.2E-76 T 15-10-2018 NJ56_00025 a0bdd0d32501d0cd9e2d4abe439c4c9a 453 SMART SM00487 20 223 6.5E-60 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_00025 a0bdd0d32501d0cd9e2d4abe439c4c9a 453 SUPERFAMILY SSF52540 75 361 1.48E-74 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00025 a0bdd0d32501d0cd9e2d4abe439c4c9a 453 Pfam PF00271 Helicase conserved C-terminal domain 235 339 1.2E-26 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_00025 a0bdd0d32501d0cd9e2d4abe439c4c9a 453 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 15-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site NJ56_00025 a0bdd0d32501d0cd9e2d4abe439c4c9a 453 Pfam PF00270 DEAD/DEAH box helicase 25 195 1.6E-51 T 15-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NJ56_05805 8fa4bfcc4bc86b0eda4012eebab1bf81 157 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 152 2.9E-73 T 15-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 NJ56_05805 8fa4bfcc4bc86b0eda4012eebab1bf81 157 SUPERFAMILY SSF75217 1 152 8.5E-46 T 15-10-2018 IPR029028 Alpha/beta knot methyltransferases NJ56_05805 8fa4bfcc4bc86b0eda4012eebab1bf81 157 Gene3D G3DSA:3.40.1280.10 1 157 7.8E-74 T 15-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NJ56_05805 8fa4bfcc4bc86b0eda4012eebab1bf81 157 Pfam PF00588 SpoU rRNA Methylase family 2 142 5.9E-34 T 15-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 NJ56_05805 8fa4bfcc4bc86b0eda4012eebab1bf81 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 34.531 T 15-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 NJ56_05805 8fa4bfcc4bc86b0eda4012eebab1bf81 157 PIRSF PIRSF029256 1 154 6.8E-72 T 15-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 NJ56_01185 ae9726c7336e095a7816b0ecc0ad515a 110 PIRSF PIRSF004555 3 110 9.8E-39 T 15-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family NJ56_01185 ae9726c7336e095a7816b0ecc0ad515a 110 SUPERFAMILY SSF82607 11 104 1.2E-34 T 15-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily NJ56_01185 ae9726c7336e095a7816b0ecc0ad515a 110 Pfam PF02575 YbaB/EbfC DNA-binding family 11 100 3.5E-35 T 15-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family NJ56_01185 ae9726c7336e095a7816b0ecc0ad515a 110 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 99 22.979 T 15-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family NJ56_01185 ae9726c7336e095a7816b0ecc0ad515a 110 Gene3D G3DSA:3.30.1310.10 1 110 6.5E-47 T 15-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily NJ56_01185 ae9726c7336e095a7816b0ecc0ad515a 110 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 106 3.2E-41 T 15-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family NJ56_08355 4767032142e82af7c1312aab616f586d 131 Pfam PF07681 DoxX 8 88 1.6E-16 T 15-10-2018 IPR032808 DoxX family NJ56_10120 27e7c1318a097323043f3c6bd876dc5a 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 73 4.7E-12 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_10120 27e7c1318a097323043f3c6bd876dc5a 308 Gene3D G3DSA:1.10.10.10 6 90 9.0E-23 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_10120 27e7c1318a097323043f3c6bd876dc5a 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 4.1E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_10120 27e7c1318a097323043f3c6bd876dc5a 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 4.1E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_10120 27e7c1318a097323043f3c6bd876dc5a 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 4.1E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_10120 27e7c1318a097323043f3c6bd876dc5a 308 Gene3D G3DSA:3.40.190.10 147 298 8.1E-18 T 15-10-2018 NJ56_10120 27e7c1318a097323043f3c6bd876dc5a 308 Pfam PF03466 LysR substrate binding domain 147 300 9.2E-9 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_10120 27e7c1318a097323043f3c6bd876dc5a 308 SUPERFAMILY SSF46785 11 91 1.83E-16 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_10120 27e7c1318a097323043f3c6bd876dc5a 308 SUPERFAMILY SSF53850 146 301 1.99E-15 T 15-10-2018 NJ56_10120 27e7c1318a097323043f3c6bd876dc5a 308 Gene3D G3DSA:3.40.190.10 180 275 8.1E-18 T 15-10-2018 NJ56_03865 0d39dc19974b7b3a1104af7d5217c7a0 323 SUPERFAMILY SSF103481 43 145 1.83E-13 T 15-10-2018 NJ56_03865 0d39dc19974b7b3a1104af7d5217c7a0 323 Pfam PF00892 EamA-like transporter family 161 269 7.0E-15 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_03865 0d39dc19974b7b3a1104af7d5217c7a0 323 Pfam PF00892 EamA-like transporter family 9 144 3.3E-27 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_15770 aa3926f09639edf204532f6328b3db89 634 Gene3D G3DSA:3.40.50.300 441 631 2.9E-36 T 15-10-2018 NJ56_15770 aa3926f09639edf204532f6328b3db89 634 SMART SM00491 474 603 2.4E-54 T 15-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 NJ56_15770 aa3926f09639edf204532f6328b3db89 634 Gene3D G3DSA:3.40.50.300 18 283 1.4E-45 T 15-10-2018 NJ56_15770 aa3926f09639edf204532f6328b3db89 634 Pfam PF06733 DEAD_2 179 247 5.0E-5 T 15-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 NJ56_15770 aa3926f09639edf204532f6328b3db89 634 Pfam PF13307 Helicase C-terminal domain 459 616 1.1E-33 T 15-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 NJ56_15770 aa3926f09639edf204532f6328b3db89 634 SUPERFAMILY SSF52540 40 596 2.35E-9 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15770 aa3926f09639edf204532f6328b3db89 634 SUPERFAMILY SSF52540 13 232 7.26E-24 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_08460 24d646c96e5646549964b3e0d4f66e66 546 PIRSF PIRSF029745 7 546 2.3E-159 T 15-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 NJ56_08460 24d646c96e5646549964b3e0d4f66e66 546 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 197 510 4.5E-110 T 15-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal NJ56_08460 24d646c96e5646549964b3e0d4f66e66 546 Gene3D G3DSA:3.10.20.310 54 137 1.3E-7 T 15-10-2018 NJ56_08460 24d646c96e5646549964b3e0d4f66e66 546 Gene3D G3DSA:2.40.160.50 170 546 9.9E-101 T 15-10-2018 NJ56_08460 24d646c96e5646549964b3e0d4f66e66 546 Pfam PF08479 POTRA domain, ShlB-type 61 137 9.1E-25 T 15-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type NJ56_08460 24d646c96e5646549964b3e0d4f66e66 546 Pfam PF17287 POTRA domain 138 192 2.4E-21 T 15-10-2018 IPR035251 ShlB, POTRA domain NJ56_09555 17d392a761a9b628fdb3c8c649a31bec 1194 Gene3D G3DSA:3.90.320.10 889 1189 3.8E-110 T 15-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal NJ56_09555 17d392a761a9b628fdb3c8c649a31bec 1194 Gene3D G3DSA:1.10.3170.10 156 349 2.0E-161 T 15-10-2018 NJ56_09555 17d392a761a9b628fdb3c8c649a31bec 1194 Gene3D G3DSA:3.40.50.300 9 436 2.0E-161 T 15-10-2018 NJ56_09555 17d392a761a9b628fdb3c8c649a31bec 1194 Gene3D G3DSA:1.10.486.10 583 728 3.7E-167 T 15-10-2018 NJ56_09555 17d392a761a9b628fdb3c8c649a31bec 1194 SUPERFAMILY SSF52980 900 1184 1.45E-90 T 15-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 NJ56_09555 17d392a761a9b628fdb3c8c649a31bec 1194 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 9 1182 0.0 T 15-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 NJ56_09555 17d392a761a9b628fdb3c8c649a31bec 1194 Pfam PF00580 UvrD/REP helicase N-terminal domain 16 436 2.4E-58 T 15-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 NJ56_09555 17d392a761a9b628fdb3c8c649a31bec 1194 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 7 1183 22.913 T 15-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 NJ56_09555 17d392a761a9b628fdb3c8c649a31bec 1194 Gene3D G3DSA:3.40.50.300 445 845 3.7E-167 T 15-10-2018 NJ56_09555 17d392a761a9b628fdb3c8c649a31bec 1194 SUPERFAMILY SSF52540 17 819 1.17E-106 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09555 17d392a761a9b628fdb3c8c649a31bec 1194 Pfam PF13361 UvrD-like helicase C-terminal domain 442 808 1.5E-18 T 15-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 NJ56_03155 ae6d0ea80193d580035824d6d18df66d 268 Gene3D G3DSA:3.20.20.140 8 265 1.7E-84 T 15-10-2018 NJ56_03155 ae6d0ea80193d580035824d6d18df66d 268 Pfam PF01026 TatD related DNase 12 263 9.4E-66 T 15-10-2018 IPR001130 TatD family GO:0016788 NJ56_03155 ae6d0ea80193d580035824d6d18df66d 268 SUPERFAMILY SSF51556 11 265 2.73E-74 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_03155 ae6d0ea80193d580035824d6d18df66d 268 PIRSF PIRSF005902 2 267 1.1E-69 T 15-10-2018 IPR001130 TatD family GO:0016788 NJ56_03155 ae6d0ea80193d580035824d6d18df66d 268 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 135 145 - T 15-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 NJ56_03155 ae6d0ea80193d580035824d6d18df66d 268 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 11 19 - T 15-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 NJ56_17110 434f8b42f04f687ac986389b33ad29be 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 215 3.9E-13 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_17110 434f8b42f04f687ac986389b33ad29be 222 Gene3D G3DSA:1.10.3720.10 1 216 3.7E-40 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17110 434f8b42f04f687ac986389b33ad29be 222 SUPERFAMILY SSF161098 6 201 4.06E-28 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17110 434f8b42f04f687ac986389b33ad29be 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 5 107 5.7E-16 T 15-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 NJ56_02795 b1ec53452a696ef0a06dbfb8183f5a9e 599 SUPERFAMILY SSF56801 9 597 2.49E-110 T 15-10-2018 NJ56_02795 b1ec53452a696ef0a06dbfb8183f5a9e 599 Gene3D G3DSA:3.40.50.12780 309 464 6.2E-35 T 15-10-2018 NJ56_02795 b1ec53452a696ef0a06dbfb8183f5a9e 599 Gene3D G3DSA:3.40.50.12780 3 307 9.2E-53 T 15-10-2018 NJ56_02795 b1ec53452a696ef0a06dbfb8183f5a9e 599 Pfam PF00501 AMP-binding enzyme 15 468 1.2E-91 T 15-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 NJ56_02795 b1ec53452a696ef0a06dbfb8183f5a9e 599 ProSitePatterns PS00455 Putative AMP-binding domain signature. 185 196 - T 15-10-2018 IPR020845 AMP-binding, conserved site NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 189 43.314 T 15-10-2018 IPR011897 Translation elongation factor P-like, YeiP NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 SUPERFAMILY SSF50249 67 130 2.57E-11 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 PIRSF PIRSF005901 1 190 1.1E-59 T 15-10-2018 IPR020599 Translation elongation factor P/YeiP NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 SUPERFAMILY SSF50104 1 64 1.93E-10 T 15-10-2018 IPR008991 Translation protein SH3-like domain superfamily NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 3 189 1.7E-98 T 15-10-2018 IPR011897 Translation elongation factor P-like, YeiP NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 SUPERFAMILY SSF50249 132 189 1.88E-14 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 Gene3D G3DSA:2.40.50.140 66 130 9.3E-16 T 15-10-2018 NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 Gene3D G3DSA:2.30.30.30 1 65 1.2E-14 T 15-10-2018 IPR014722 Ribosomal protein L2, domain 2 NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 124 3.4E-14 T 15-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 SMART SM01185 69 125 1.5E-14 T 15-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 ProSitePatterns PS01275 Elongation factor P signature. 154 173 - T 15-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 Gene3D G3DSA:2.40.50.140 132 189 9.3E-20 T 15-10-2018 NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 SMART SM00841 133 188 3.3E-24 T 15-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 61 3.3E-16 T 15-10-2018 IPR013185 Translation elongation factor, KOW-like NJ56_12295 7f142e61aada1417bd8c7282dc9312e8 190 Pfam PF09285 Elongation factor P, C-terminal 133 188 1.1E-17 T 15-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 NJ56_03130 fe9e631a972426b10d78a8a549a091b2 241 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 52.798 T 15-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 NJ56_03130 fe9e631a972426b10d78a8a549a091b2 241 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 4.4E-126 T 15-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 NJ56_03130 fe9e631a972426b10d78a8a549a091b2 241 SUPERFAMILY SSF53167 3 234 1.96E-94 T 15-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 NJ56_03130 fe9e631a972426b10d78a8a549a091b2 241 Pfam PF01048 Phosphorylase superfamily 15 220 6.5E-42 T 15-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 NJ56_03130 fe9e631a972426b10d78a8a549a091b2 241 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 15-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_03130 fe9e631a972426b10d78a8a549a091b2 241 Gene3D G3DSA:3.40.50.1580 1 240 5.4E-78 T 15-10-2018 NJ56_14940 b3ffdfd163caf48d14f74c128960c3d7 591 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 496 570 6.6E-12 T 15-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 NJ56_14940 b3ffdfd163caf48d14f74c128960c3d7 591 PIRSF PIRSF037343 1 588 4.8E-274 T 15-10-2018 IPR017180 Phosphotransferase system component IIBC, sugar-specific, predicted NJ56_14940 b3ffdfd163caf48d14f74c128960c3d7 591 Gene3D G3DSA:3.40.50.2300 495 585 2.0E-17 T 15-10-2018 NJ56_14940 b3ffdfd163caf48d14f74c128960c3d7 591 Pfam PF03611 PTS system sugar-specific permease component 15 415 5.3E-121 T 15-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 NJ56_14940 b3ffdfd163caf48d14f74c128960c3d7 591 SUPERFAMILY SSF52794 495 586 2.12E-14 T 15-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 NJ56_12020 a85887e11d6741ff0a96c73adff55188 292 Gene3D G3DSA:3.40.50.1820 5 292 5.8E-81 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_12020 a85887e11d6741ff0a96c73adff55188 292 SUPERFAMILY SSF53474 6 264 8.68E-39 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_12020 a85887e11d6741ff0a96c73adff55188 292 Pfam PF00561 alpha/beta hydrolase fold 8 201 3.2E-14 T 15-10-2018 IPR000073 Alpha/beta hydrolase fold-1 NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 421 440 1.2E-54 T 15-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 161 181 1.2E-54 T 15-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 193 207 1.2E-54 T 15-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 225 239 1.2E-54 T 15-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 259 286 1.2E-54 T 15-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 Gene3D G3DSA:3.40.50.300 115 292 2.2E-51 T 15-10-2018 NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 SUPERFAMILY SSF48295 359 462 3.4E-38 T 15-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 Pfam PF11638 DnaA N-terminal domain 4 64 2.7E-20 T 15-10-2018 IPR024633 DnaA N-terminal domain NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 ProSitePatterns PS01008 DnaA protein signature. 421 440 - T 15-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 Gene3D G3DSA:3.30.300.180 2 107 3.6E-40 T 15-10-2018 IPR038454 DnaA, N-terminal domain superfamily NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 SMART SM00760 371 440 6.1E-45 T 15-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 SMART SM00382 160 362 6.3E-7 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 Gene3D G3DSA:1.10.8.60 294 364 1.1E-23 T 15-10-2018 NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 SUPERFAMILY SSF52540 128 339 7.92E-45 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 461 1.4E-185 T 15-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 Gene3D G3DSA:1.10.1750.10 370 463 7.3E-40 T 15-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 Pfam PF00308 Bacterial dnaA protein 129 345 5.8E-99 T 15-10-2018 IPR013317 Chromosomal replication initiator protein DnaA NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 372 440 1.0E-32 T 15-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 NJ56_06390 674b14ecb229f709c493fdf5d6b00653 463 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 462 34.446 T 15-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 NJ56_03670 adf34de5c603f7ce46275e899be0069d 239 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 6 223 1.4E-108 T 15-10-2018 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 NJ56_03670 adf34de5c603f7ce46275e899be0069d 239 SUPERFAMILY SSF52540 5 228 5.84E-45 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03670 adf34de5c603f7ce46275e899be0069d 239 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_03670 adf34de5c603f7ce46275e899be0069d 239 Gene3D G3DSA:3.40.50.300 3 231 3.9E-46 T 15-10-2018 NJ56_03670 adf34de5c603f7ce46275e899be0069d 239 SMART SM00382 37 232 3.3E-8 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_03670 adf34de5c603f7ce46275e899be0069d 239 Pfam PF00005 ABC transporter 28 182 2.1E-28 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_11490 39d2631cce5bff7f95330af28e04c378 342 SUPERFAMILY SSF103481 241 326 8.11E-17 T 15-10-2018 NJ56_11490 39d2631cce5bff7f95330af28e04c378 342 Pfam PF00892 EamA-like transporter family 170 322 2.2E-18 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_11490 39d2631cce5bff7f95330af28e04c378 342 Pfam PF00892 EamA-like transporter family 23 157 6.7E-15 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_11490 39d2631cce5bff7f95330af28e04c378 342 SUPERFAMILY SSF103481 58 160 5.62E-9 T 15-10-2018 NJ56_11490 39d2631cce5bff7f95330af28e04c378 342 Gene3D G3DSA:1.10.3730.20 231 327 2.4E-6 T 15-10-2018 NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 175 7.9E-11 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 7.9E-11 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 7.9E-11 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 7.9E-11 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 192 2.2E-35 T 15-10-2018 NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 Gene3D G3DSA:1.10.150.240 22 92 4.0E-63 T 15-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 92 187 1.5E-10 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 7 223 37.138 T 15-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 11 221 3.4E-76 T 15-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 Gene3D G3DSA:3.40.50.1000 11 215 4.0E-63 T 15-10-2018 IPR023214 HAD superfamily NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 SUPERFAMILY SSF56784 5 222 2.46E-57 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_07125 3434acddaf2317ad7e3bfe9b51eb1569 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 84 192 1.2E-9 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 Gene3D G3DSA:1.10.287.130 203 317 8.3E-17 T 15-10-2018 NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 SMART SM00388 252 317 1.2E-9 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 SMART SM00304 199 251 5.4E-4 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 Gene3D G3DSA:3.30.565.10 320 472 5.4E-23 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 314 8.4E-9 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 413 1.0E-5 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 450 1.0E-5 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 SUPERFAMILY SSF55874 307 451 1.13E-24 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 SMART SM00387 360 473 9.2E-22 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 361 451 4.9E-11 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 SUPERFAMILY SSF47384 235 314 2.16E-14 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_01195 0f34864f3b5b7bd09b59b7d3873428dd 473 Pfam PF08521 Two-component sensor kinase N-terminal 27 175 5.4E-42 T 15-10-2018 IPR013727 Two-component sensor kinase, N-terminal NJ56_18110 b312aa4b3a313e670679fe9f71aa8c9f 107 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 13 100 1.6E-22 T 15-10-2018 IPR009241 Toxin HigB-like NJ56_18110 b312aa4b3a313e670679fe9f71aa8c9f 107 SUPERFAMILY SSF143011 1 55 1.63E-7 T 15-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 125 207 1.4E-24 T 15-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 PIRSF PIRSF000463 7 727 5.2E-287 T 15-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 Gene3D G3DSA:3.20.20.80 231 612 2.8E-171 T 15-10-2018 NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 SUPERFAMILY SSF51011 624 726 4.75E-34 T 15-10-2018 NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 628 724 3.5E-21 T 15-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 Pfam PF00128 Alpha amylase, catalytic domain 273 343 2.0E-10 T 15-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 SUPERFAMILY SSF81296 117 224 1.66E-35 T 15-10-2018 IPR014756 Immunoglobulin E-set NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 101 726 43.603 T 15-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 Gene3D G3DSA:2.60.40.10 3 221 1.2E-76 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 SUPERFAMILY SSF51445 230 620 7.04E-113 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 SMART SM00642 247 601 2.6E-6 T 15-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 109 723 1.2E-301 T 15-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 SUPERFAMILY SSF81296 16 115 2.1E-16 T 15-10-2018 IPR014756 Immunoglobulin E-set NJ56_06905 fb7e9a46ae0ef8795c089fd9a474429d 727 Gene3D G3DSA:2.60.40.1180 623 727 2.0E-37 T 15-10-2018 IPR013780 Glycosyl hydrolase, all-beta NJ56_17100 dd0a20820b6b5631c247c922e5b9d2c4 243 SUPERFAMILY SSF53850 1 242 1.38E-72 T 15-10-2018 NJ56_17100 dd0a20820b6b5631c247c922e5b9d2c4 243 SMART SM00079 22 243 1.8E-5 T 15-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 NJ56_17100 dd0a20820b6b5631c247c922e5b9d2c4 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 15-10-2018 IPR018313 Solute-binding protein family 3, conserved site NJ56_17100 dd0a20820b6b5631c247c922e5b9d2c4 243 Gene3D G3DSA:3.40.190.10 108 201 1.7E-82 T 15-10-2018 NJ56_17100 dd0a20820b6b5631c247c922e5b9d2c4 243 SMART SM00062 22 241 2.3E-85 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_17100 dd0a20820b6b5631c247c922e5b9d2c4 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 4.9E-69 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_17100 dd0a20820b6b5631c247c922e5b9d2c4 243 Gene3D G3DSA:3.40.190.10 26 240 1.7E-82 T 15-10-2018 NJ56_17100 dd0a20820b6b5631c247c922e5b9d2c4 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 3 241 3.7E-88 T 15-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 NJ56_03780 c308ceff39299cf0ad61d2b33be9719f 136 SUPERFAMILY SSF89919 2 110 2.35E-31 T 15-10-2018 IPR023799 Ribosome-binding factor A domain superfamily NJ56_03780 c308ceff39299cf0ad61d2b33be9719f 136 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 103 3.0E-49 T 15-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 NJ56_03780 c308ceff39299cf0ad61d2b33be9719f 136 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 121 6.5E-41 T 15-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 NJ56_03780 c308ceff39299cf0ad61d2b33be9719f 136 Pfam PF02033 Ribosome-binding factor A 7 115 3.5E-30 T 15-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 NJ56_03780 c308ceff39299cf0ad61d2b33be9719f 136 ProSitePatterns PS01319 Ribosome-binding factor A signature. 82 103 - T 15-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 NJ56_03780 c308ceff39299cf0ad61d2b33be9719f 136 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 116 25.761 T 15-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 NJ56_03780 c308ceff39299cf0ad61d2b33be9719f 136 Gene3D G3DSA:3.30.300.20 1 111 2.0E-38 T 15-10-2018 IPR015946 K homology domain-like, alpha/beta NJ56_07840 c7625eedd505e7b57adcf14b68f91e1a 202 Pfam PF01726 LexA DNA binding domain 1 65 1.6E-29 T 15-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 NJ56_07840 c7625eedd505e7b57adcf14b68f91e1a 202 SUPERFAMILY SSF51306 76 198 2.09E-38 T 15-10-2018 IPR036286 LexA/Signal peptidase-like superfamily NJ56_07840 c7625eedd505e7b57adcf14b68f91e1a 202 Gene3D G3DSA:2.10.109.10 80 202 5.2E-47 T 15-10-2018 NJ56_07840 c7625eedd505e7b57adcf14b68f91e1a 202 Hamap MF_00015 LexA repressor [lexA]. 3 199 32.335 T 15-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 NJ56_07840 c7625eedd505e7b57adcf14b68f91e1a 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 150 162 7.4E-14 T 15-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NJ56_07840 c7625eedd505e7b57adcf14b68f91e1a 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 122 133 7.4E-14 T 15-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NJ56_07840 c7625eedd505e7b57adcf14b68f91e1a 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 111 121 7.4E-14 T 15-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NJ56_07840 c7625eedd505e7b57adcf14b68f91e1a 202 Pfam PF00717 Peptidase S24-like 114 179 5.7E-15 T 15-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C NJ56_07840 c7625eedd505e7b57adcf14b68f91e1a 202 Gene3D G3DSA:1.10.10.10 1 70 6.3E-30 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_07840 c7625eedd505e7b57adcf14b68f91e1a 202 TIGRFAM TIGR00498 lexA: repressor LexA 1 199 1.1E-83 T 15-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 NJ56_07840 c7625eedd505e7b57adcf14b68f91e1a 202 SUPERFAMILY SSF46785 3 69 3.44E-20 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 SMART SM00387 345 455 9.3E-33 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 SMART SM00304 184 237 2.1E-9 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 Gene3D G3DSA:3.30.450.210 27 147 8.5E-10 T 15-10-2018 IPR038515 CpxA, periplasmic domain superfamily NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 83 153 1.3E-10 T 15-10-2018 IPR032404 Two-component sensor protein CpxA, periplasmic domain NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 Pfam PF00672 HAMP domain 184 234 8.0E-7 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 SUPERFAMILY SSF55874 289 455 1.01E-38 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 SUPERFAMILY SSF47384 224 299 2.35E-16 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 298 3.6E-13 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 Gene3D G3DSA:3.30.565.10 304 454 2.1E-41 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 Gene3D G3DSA:1.10.287.130 188 302 9.5E-38 T 15-10-2018 NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 454 4.2E-21 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 SMART SM00388 238 300 3.8E-14 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 452 1.5E-15 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 1.5E-15 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 1.5E-15 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_05800 f8e57cf72dcd14c2646046469d59e3c3 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 1.5E-15 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_03840 27c3745e91c10eec4da70e0f59c448bb 158 Gene3D G3DSA:1.10.287.180 1 75 1.3E-32 T 15-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 NJ56_03840 27c3745e91c10eec4da70e0f59c448bb 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 15-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 NJ56_03840 27c3745e91c10eec4da70e0f59c448bb 158 PIRSF PIRSF006092 1 158 5.2E-55 T 15-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 NJ56_03840 27c3745e91c10eec4da70e0f59c448bb 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 15-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 NJ56_03840 27c3745e91c10eec4da70e0f59c448bb 158 SUPERFAMILY SSF46557 3 78 7.72E-29 T 15-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 NJ56_03840 27c3745e91c10eec4da70e0f59c448bb 158 SUPERFAMILY SSF54534 81 157 3.79E-24 T 15-10-2018 NJ56_03840 27c3745e91c10eec4da70e0f59c448bb 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 2.9E-28 T 15-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 NJ56_03840 27c3745e91c10eec4da70e0f59c448bb 158 Gene3D G3DSA:3.10.50.30 76 158 1.8E-32 T 15-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 NJ56_03840 27c3745e91c10eec4da70e0f59c448bb 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.951 T 15-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 NJ56_03840 27c3745e91c10eec4da70e0f59c448bb 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 2.0E-31 T 15-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 NJ56_03840 27c3745e91c10eec4da70e0f59c448bb 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 9.1E-60 T 15-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 ProSitePatterns PS00164 Enolase signature. 339 352 - T 15-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 Hamap MF_00318 Enolase [eno]. 2 416 43.944 T 15-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 PIRSF PIRSF001400 1 429 7.7E-191 T 15-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 429 6.2E-140 T 15-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 Pfam PF03952 Enolase, N-terminal domain 4 134 8.7E-58 T 15-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 428 2.9E-205 T 15-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 SMART SM01192 143 430 6.3E-212 T 15-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 Gene3D G3DSA:3.20.20.120 128 431 9.5E-136 T 15-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 Gene3D G3DSA:3.30.390.10 3 127 1.9E-54 T 15-10-2018 IPR029017 Enolase-like, N-terminal NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 SMART SM01193 4 134 4.1E-92 T 15-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 SUPERFAMILY SSF51604 143 427 9.62E-127 T 15-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 SUPERFAMILY SSF54826 3 138 1.34E-55 T 15-10-2018 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 PRINTS PR00148 Enolase signature 107 123 1.2E-44 T 15-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 PRINTS PR00148 Enolase signature 37 51 1.2E-44 T 15-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 PRINTS PR00148 Enolase signature 165 178 1.2E-44 T 15-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 PRINTS PR00148 Enolase signature 368 385 1.2E-44 T 15-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 PRINTS PR00148 Enolase signature 316 327 1.2E-44 T 15-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_02390 289dfc3d498b39e8aa2516f28d0f5c89 431 PRINTS PR00148 Enolase signature 339 353 1.2E-44 T 15-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_10315 7688050a67ac72d954586bd222004c6b 437 Gene3D G3DSA:3.40.50.300 1 212 1.9E-71 T 15-10-2018 NJ56_10315 7688050a67ac72d954586bd222004c6b 437 SMART SM00487 23 225 2.4E-58 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_10315 7688050a67ac72d954586bd222004c6b 437 Pfam PF00270 DEAD/DEAH box helicase 28 196 1.0E-46 T 15-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NJ56_10315 7688050a67ac72d954586bd222004c6b 437 Gene3D G3DSA:3.40.50.300 219 388 4.5E-48 T 15-10-2018 NJ56_10315 7688050a67ac72d954586bd222004c6b 437 SUPERFAMILY SSF52540 35 354 2.53E-66 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_10315 7688050a67ac72d954586bd222004c6b 437 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 15-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site NJ56_10315 7688050a67ac72d954586bd222004c6b 437 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 4 427 49.52 T 15-10-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 NJ56_10315 7688050a67ac72d954586bd222004c6b 437 Pfam PF00271 Helicase conserved C-terminal domain 236 343 9.4E-26 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_10315 7688050a67ac72d954586bd222004c6b 437 SMART SM00490 262 343 2.7E-27 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_06015 d168223f63a3cf3654a9e6d5fa51755e 404 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 2 397 3.9E-192 T 15-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 NJ56_06015 d168223f63a3cf3654a9e6d5fa51755e 404 Pfam PF03616 Sodium/glutamate symporter 2 366 1.4E-160 T 15-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 NJ56_06015 d168223f63a3cf3654a9e6d5fa51755e 404 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 397 24.687 T 15-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 NJ56_05480 bd3a94d487c2562987197529780c9706 507 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 390 5.4E-91 T 15-10-2018 IPR000523 Magnesium chelatase ChlI domain NJ56_05480 bd3a94d487c2562987197529780c9706 507 Gene3D G3DSA:3.40.50.300 189 498 1.1E-54 T 15-10-2018 NJ56_05480 bd3a94d487c2562987197529780c9706 507 SUPERFAMILY SSF54211 10 169 1.93E-28 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_05480 bd3a94d487c2562987197529780c9706 507 SMART SM00382 210 390 7.1E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_05480 bd3a94d487c2562987197529780c9706 507 SUPERFAMILY SSF52540 189 502 7.31E-49 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05480 bd3a94d487c2562987197529780c9706 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 8.0E-7 T 15-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 NJ56_05480 bd3a94d487c2562987197529780c9706 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 341 353 8.0E-7 T 15-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 NJ56_05480 bd3a94d487c2562987197529780c9706 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 317 330 8.0E-7 T 15-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 NJ56_05480 bd3a94d487c2562987197529780c9706 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 289 303 8.0E-7 T 15-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 NJ56_05480 bd3a94d487c2562987197529780c9706 507 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 493 1.4E-215 T 15-10-2018 IPR004482 Mg chelatase-related protein NJ56_05480 bd3a94d487c2562987197529780c9706 507 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 2.3E-43 T 15-10-2018 NJ56_05480 bd3a94d487c2562987197529780c9706 507 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 401 493 1.9E-29 T 15-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain NJ56_04790 449471970bab0f9978fb54471a0b23d2 127 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 69 123 4.1E-17 T 15-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 NJ56_04790 449471970bab0f9978fb54471a0b23d2 127 Hamap MF_00422 Protein translocase subunit SecE [secE]. 67 121 13.188 T 15-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 NJ56_04790 449471970bab0f9978fb54471a0b23d2 127 PRINTS PR01650 Bacterial translocase SecE signature 65 85 2.3E-38 T 15-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 NJ56_04790 449471970bab0f9978fb54471a0b23d2 127 PRINTS PR01650 Bacterial translocase SecE signature 44 65 2.3E-38 T 15-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 NJ56_04790 449471970bab0f9978fb54471a0b23d2 127 PRINTS PR01650 Bacterial translocase SecE signature 109 125 2.3E-38 T 15-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 NJ56_04790 449471970bab0f9978fb54471a0b23d2 127 PRINTS PR01650 Bacterial translocase SecE signature 89 109 2.3E-38 T 15-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 NJ56_04790 449471970bab0f9978fb54471a0b23d2 127 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 71 99 - T 15-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 NJ56_04790 449471970bab0f9978fb54471a0b23d2 127 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 122 3.9E-20 T 15-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 NJ56_04790 449471970bab0f9978fb54471a0b23d2 127 Gene3D G3DSA:1.20.5.1030 66 123 4.9E-16 T 15-10-2018 IPR038379 SecE superfamily NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 58 225 2.5E-63 T 15-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 SUPERFAMILY SSF51445 347 636 9.78E-101 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 Gene3D G3DSA:2.60.120.260 10 225 1.3E-78 T 15-10-2018 IPR008979 Galactose-binding-like domain superfamily NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 347 640 1.4E-111 T 15-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 SUPERFAMILY SSF74650 758 1041 1.88E-94 T 15-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 Gene3D G3DSA:3.20.20.80 346 635 3.3E-124 T 15-10-2018 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 SUPERFAMILY SSF49303 227 345 1.96E-18 T 15-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 Pfam PF16353 Domain of unknown function(DUF4981) 651 739 1.2E-17 T 15-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 459 473 - T 15-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 Pfam PF00703 Glycosyl hydrolases family 2 227 345 2.4E-8 T 15-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 Gene3D G3DSA:2.60.40.10 637 743 5.1E-24 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 SMART SM01038 769 1042 4.5E-115 T 15-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 Gene3D G3DSA:2.70.98.10 753 1043 1.3E-89 T 15-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 397 422 - T 15-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 PRINTS PR00132 Glycosyl hydrolase family 2 signature 459 474 1.0E-37 T 15-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 PRINTS PR00132 Glycosyl hydrolase family 2 signature 387 405 1.0E-37 T 15-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 PRINTS PR00132 Glycosyl hydrolase family 2 signature 543 558 1.0E-37 T 15-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 PRINTS PR00132 Glycosyl hydrolase family 2 signature 153 168 1.0E-37 T 15-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 PRINTS PR00132 Glycosyl hydrolase family 2 signature 356 370 1.0E-37 T 15-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 Hamap MF_01687 Beta-galactosidase [lacZ]. 12 1044 17.339 T 15-10-2018 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 SUPERFAMILY SSF49785 21 225 1.84E-65 T 15-10-2018 IPR008979 Galactose-binding-like domain superfamily NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 SUPERFAMILY SSF49303 634 740 3.67E-28 T 15-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 Pfam PF02929 Beta galactosidase small chain 773 1039 1.8E-60 T 15-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 NJ56_12725 28f95f644f5d99ab3c3fa3cae01f72f2 1047 Gene3D G3DSA:2.60.40.10 226 345 2.7E-19 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_07470 4d06cdcbdaa96a508fb6a347610bdc61 38 SUPERFAMILY SSF57840 1 38 5.49E-17 T 15-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07470 4d06cdcbdaa96a508fb6a347610bdc61 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 4.7E-22 T 15-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07470 4d06cdcbdaa96a508fb6a347610bdc61 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.971 T 15-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07470 4d06cdcbdaa96a508fb6a347610bdc61 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 15-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07470 4d06cdcbdaa96a508fb6a347610bdc61 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 4.0E-10 T 15-10-2018 NJ56_07470 4d06cdcbdaa96a508fb6a347610bdc61 38 Pfam PF00444 Ribosomal protein L36 1 38 1.7E-20 T 15-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 5.8E-22 T 15-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 2.8E-221 T 15-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 SUPERFAMILY SSF52540 90 371 1.28E-67 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 Gene3D G3DSA:2.40.50.140 48 117 1.3E-35 T 15-10-2018 NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 SMART SM00382 170 355 4.9E-8 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 250.291 T 15-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.1E-15 T 15-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 Gene3D G3DSA:1.10.720.10 1 47 1.2E-23 T 15-10-2018 NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 SMART SM00357 52 118 9.6E-19 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 2.7E-32 T 15-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 SUPERFAMILY SSF50249 48 125 9.0E-30 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 Gene3D G3DSA:3.40.50.300 130 417 2.0E-133 T 15-10-2018 NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 SMART SM00959 5 47 2.9E-16 T 15-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 NJ56_05400 09e26c5cc5f6b849ea8fafb353a9c33d 419 SUPERFAMILY SSF68912 1 46 1.65E-11 T 15-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily NJ56_11340 89627ede4478c19141c9d89fc8091d14 245 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 225 3.6E-81 T 15-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11340 89627ede4478c19141c9d89fc8091d14 245 Pfam PF01578 Cytochrome C assembly protein 18 184 1.1E-31 T 15-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 NJ56_11340 89627ede4478c19141c9d89fc8091d14 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 4.5E-62 T 15-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11340 89627ede4478c19141c9d89fc8091d14 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 4.5E-62 T 15-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11340 89627ede4478c19141c9d89fc8091d14 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 4.5E-62 T 15-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11340 89627ede4478c19141c9d89fc8091d14 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 4.5E-62 T 15-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11340 89627ede4478c19141c9d89fc8091d14 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 4.5E-62 T 15-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_11340 89627ede4478c19141c9d89fc8091d14 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 201 225 4.5E-62 T 15-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 NJ56_03675 ffe27dfdb68df33ab5749365bc1e393d 378 Pfam PF01979 Amidohydrolase family 47 358 1.2E-11 T 15-10-2018 IPR006680 Amidohydrolase-related GO:0016787 NJ56_03675 ffe27dfdb68df33ab5749365bc1e393d 378 Gene3D G3DSA:2.30.40.10 307 378 9.7E-8 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_03675 ffe27dfdb68df33ab5749365bc1e393d 378 Gene3D G3DSA:3.20.20.140 1 269 7.0E-9 T 15-10-2018 NJ56_03675 ffe27dfdb68df33ab5749365bc1e393d 378 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 2 378 1.7E-156 T 15-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 NJ56_03675 ffe27dfdb68df33ab5749365bc1e393d 378 SUPERFAMILY SSF51338 2 377 3.3E-12 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_03675 ffe27dfdb68df33ab5749365bc1e393d 378 SUPERFAMILY SSF51556 50 345 1.28E-23 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_03675 ffe27dfdb68df33ab5749365bc1e393d 378 PIRSF PIRSF038971 1 378 6.1E-156 T 15-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 NJ56_14620 c3d3fab0c483c2c5a14244489f963133 286 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 285 3.6E-130 T 15-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 NJ56_14620 c3d3fab0c483c2c5a14244489f963133 286 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 286 54.283 T 15-10-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 NJ56_14620 c3d3fab0c483c2c5a14244489f963133 286 Pfam PF08543 Phosphomethylpyrimidine kinase 75 263 1.5E-15 T 15-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 NJ56_14620 c3d3fab0c483c2c5a14244489f963133 286 Gene3D G3DSA:3.40.1190.20 1 286 1.4E-90 T 15-10-2018 IPR029056 Ribokinase-like NJ56_14620 c3d3fab0c483c2c5a14244489f963133 286 SUPERFAMILY SSF53613 1 278 1.56E-75 T 15-10-2018 IPR029056 Ribokinase-like NJ56_14155 24e13f1a908fa68b4fa109a501683ecb 276 SUPERFAMILY SSF55846 24 194 8.11E-52 T 15-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_14155 24e13f1a908fa68b4fa109a501683ecb 276 Gene3D G3DSA:1.10.101.10 193 276 8.5E-28 T 15-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 NJ56_14155 24e13f1a908fa68b4fa109a501683ecb 276 SUPERFAMILY SSF47090 201 275 1.96E-21 T 15-10-2018 IPR036365 PGBD-like superfamily NJ56_14155 24e13f1a908fa68b4fa109a501683ecb 276 SMART SM00644 32 178 4.1E-25 T 15-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_14155 24e13f1a908fa68b4fa109a501683ecb 276 Gene3D G3DSA:3.40.80.10 42 192 1.6E-47 T 15-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_14155 24e13f1a908fa68b4fa109a501683ecb 276 Pfam PF01471 Putative peptidoglycan binding domain 214 265 1.0E-6 T 15-10-2018 IPR002477 Peptidoglycan binding-like NJ56_14155 24e13f1a908fa68b4fa109a501683ecb 276 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 41 179 2.7E-26 T 15-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_09090 833148c1c4fd800bdb3d033f0ea42d01 197 Gene3D G3DSA:3.90.950.10 1 197 1.4E-82 T 15-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like NJ56_09090 833148c1c4fd800bdb3d033f0ea42d01 197 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 194 1.5E-67 T 15-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 NJ56_09090 833148c1c4fd800bdb3d033f0ea42d01 197 Pfam PF01725 Ham1 family 4 192 1.6E-56 T 15-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 NJ56_09090 833148c1c4fd800bdb3d033f0ea42d01 197 Hamap MF_01405 dITP/XTP pyrophosphatase. 2 196 51.052 T 15-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 NJ56_09090 833148c1c4fd800bdb3d033f0ea42d01 197 SUPERFAMILY SSF52972 1 196 4.71E-74 T 15-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like NJ56_17640 458b416c92bc1a9fe77135ee4b6c68cd 189 Pfam PF13091 PLD-like domain 50 174 1.8E-27 T 15-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 NJ56_17640 458b416c92bc1a9fe77135ee4b6c68cd 189 SUPERFAMILY SSF56024 42 180 1.79E-32 T 15-10-2018 NJ56_17640 458b416c92bc1a9fe77135ee4b6c68cd 189 Gene3D G3DSA:3.30.870.10 9 181 5.8E-44 T 15-10-2018 NJ56_01980 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Gene3D G3DSA:3.30.70.1680 1 61 1.3E-31 T 15-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 NJ56_01980 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 SUPERFAMILY SSF117130 1 54 3.66E-21 T 15-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 NJ56_01980 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 59 17.134 T 15-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 NJ56_01980 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 3.0E-20 T 15-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 NJ56_01980 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Pfam PF02599 Global regulator protein family 1 52 2.5E-27 T 15-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 NJ56_01980 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 59 1.3E-31 T 15-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 NJ56_04820 46146f23a4454e65932f657cffb19332 316 PIRSF PIRSF000545 1 316 7.1E-147 T 15-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 NJ56_04820 46146f23a4454e65932f657cffb19332 316 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 90 244 2.5E-15 T 15-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 NJ56_04820 46146f23a4454e65932f657cffb19332 316 Hamap MF_00215 Pantothenate kinase [coaA]. 1 316 187.629 T 15-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 NJ56_04820 46146f23a4454e65932f657cffb19332 316 Gene3D G3DSA:3.40.50.300 9 316 2.4E-93 T 15-10-2018 NJ56_04820 46146f23a4454e65932f657cffb19332 316 SUPERFAMILY SSF52540 10 315 7.35E-76 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04820 46146f23a4454e65932f657cffb19332 316 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 10 316 1.5E-168 T 15-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 NJ56_09110 6b0e98b741d5c3cf0712b33a5e2decc7 237 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 77 91 - T 15-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 NJ56_09110 6b0e98b741d5c3cf0712b33a5e2decc7 237 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 226 33.272 T 15-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 NJ56_09110 6b0e98b741d5c3cf0712b33a5e2decc7 237 Pfam PF01168 Alanine racemase, N-terminal domain 7 227 3.5E-28 T 15-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_09110 6b0e98b741d5c3cf0712b33a5e2decc7 237 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 227 5.8E-94 T 15-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 NJ56_09110 6b0e98b741d5c3cf0712b33a5e2decc7 237 Gene3D G3DSA:3.20.20.10 1 232 1.3E-82 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_09110 6b0e98b741d5c3cf0712b33a5e2decc7 237 SUPERFAMILY SSF51419 1 225 4.45E-80 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_09110 6b0e98b741d5c3cf0712b33a5e2decc7 237 PIRSF PIRSF004848 1 232 4.4E-76 T 15-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 NJ56_15660 ea5897ce3df896c6fc8ed080271b9b06 294 Gene3D G3DSA:1.10.10.10 1 91 1.1E-32 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_15660 ea5897ce3df896c6fc8ed080271b9b06 294 Pfam PF03466 LysR substrate binding domain 87 292 7.8E-38 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_15660 ea5897ce3df896c6fc8ed080271b9b06 294 Gene3D G3DSA:3.40.190.10 164 269 2.2E-54 T 15-10-2018 NJ56_15660 ea5897ce3df896c6fc8ed080271b9b06 294 Gene3D G3DSA:3.40.190.10 92 287 2.2E-54 T 15-10-2018 NJ56_15660 ea5897ce3df896c6fc8ed080271b9b06 294 SUPERFAMILY SSF46785 1 85 1.75E-25 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_15660 ea5897ce3df896c6fc8ed080271b9b06 294 SUPERFAMILY SSF53850 88 293 5.25E-33 T 15-10-2018 NJ56_15660 ea5897ce3df896c6fc8ed080271b9b06 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.3E-24 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_15660 ea5897ce3df896c6fc8ed080271b9b06 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.0E-10 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_15660 ea5897ce3df896c6fc8ed080271b9b06 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.0E-10 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_15660 ea5897ce3df896c6fc8ed080271b9b06 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.0E-10 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_03775 7264c480f56444a3ad110b9cda0bb74a 314 SUPERFAMILY SSF88697 251 310 1.29E-14 T 15-10-2018 IPR015947 PUA-like superfamily NJ56_03775 7264c480f56444a3ad110b9cda0bb74a 314 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 11 219 1.6E-90 T 15-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_03775 7264c480f56444a3ad110b9cda0bb74a 314 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 309 19.242 T 15-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_03775 7264c480f56444a3ad110b9cda0bb74a 314 SUPERFAMILY SSF55120 10 248 1.21E-83 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_03775 7264c480f56444a3ad110b9cda0bb74a 314 Gene3D G3DSA:2.30.130.10 250 314 4.5E-29 T 15-10-2018 IPR036974 PUA domain superfamily GO:0003723 NJ56_03775 7264c480f56444a3ad110b9cda0bb74a 314 Gene3D G3DSA:3.30.2350.10 1 249 4.9E-94 T 15-10-2018 NJ56_03775 7264c480f56444a3ad110b9cda0bb74a 314 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 252 309 6.1E-20 T 15-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_03775 7264c480f56444a3ad110b9cda0bb74a 314 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 248 2.8E-24 T 15-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 NJ56_03775 7264c480f56444a3ad110b9cda0bb74a 314 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 1.6E-58 T 15-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 NJ56_01245 f3ab4946bff1e6c5225e4bff2db1eaa1 117 Pfam PF02635 DsrE/DsrF-like family 4 117 5.1E-19 T 15-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein NJ56_01245 f3ab4946bff1e6c5225e4bff2db1eaa1 117 SUPERFAMILY SSF75169 1 117 1.44E-31 T 15-10-2018 IPR027396 DsrEFH-like NJ56_01245 f3ab4946bff1e6c5225e4bff2db1eaa1 117 Gene3D G3DSA:3.40.1260.10 3 117 3.4E-30 T 15-10-2018 IPR027396 DsrEFH-like NJ56_02880 9b89e141921b4d485f8b058f519f41f8 793 Pfam PF04453 Organic solvent tolerance protein 307 706 1.8E-99 T 15-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 NJ56_02880 9b89e141921b4d485f8b058f519f41f8 793 Pfam PF03968 OstA-like protein 52 193 1.9E-29 T 15-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal NJ56_02880 9b89e141921b4d485f8b058f519f41f8 793 Gene3D G3DSA:2.60.450.10 43 132 2.2E-7 T 15-10-2018 NJ56_02880 9b89e141921b4d485f8b058f519f41f8 793 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 3 772 19.988 T 15-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 Pfam PF14842 FliG N-terminal domain 3 102 8.1E-31 T 15-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 193 218 2.6E-72 T 15-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 2.6E-72 T 15-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 113 136 2.6E-72 T 15-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 32 58 2.6E-72 T 15-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 270 296 2.6E-72 T 15-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 3 19 2.6E-72 T 15-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 224 244 2.6E-72 T 15-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 SUPERFAMILY SSF48029 4 103 7.32E-21 T 15-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 SUPERFAMILY SSF48029 113 323 1.96E-62 T 15-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 PIRSF PIRSF003161 1 330 7.0E-116 T 15-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 Pfam PF14841 FliG middle domain 114 186 1.3E-24 T 15-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 Pfam PF01706 FliG C-terminal domain 216 322 1.1E-36 T 15-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 Gene3D G3DSA:1.10.220.30 88 191 2.2E-26 T 15-10-2018 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 Gene3D G3DSA:1.10.220.30 1 81 1.8E-19 T 15-10-2018 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 2 330 5.1E-138 T 15-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NJ56_13050 11ab29b13d1ca42be4804c3f8f810df0 330 Gene3D G3DSA:1.10.220.30 193 329 6.4E-41 T 15-10-2018 NJ56_00600 74ff404fc0f74d61cf6455c8d0d37e14 157 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 5 148 24.176 T 15-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 NJ56_00600 74ff404fc0f74d61cf6455c8d0d37e14 157 Pfam PF02130 Uncharacterized protein family UPF0054 20 143 3.7E-38 T 15-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 NJ56_00600 74ff404fc0f74d61cf6455c8d0d37e14 157 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 114 124 - T 15-10-2018 IPR020549 Endoribonuclease YbeY, conserved site NJ56_00600 74ff404fc0f74d61cf6455c8d0d37e14 157 Gene3D G3DSA:3.40.390.30 1 155 2.2E-59 T 15-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 NJ56_00600 74ff404fc0f74d61cf6455c8d0d37e14 157 SUPERFAMILY SSF55486 3 151 6.1E-49 T 15-10-2018 NJ56_00600 74ff404fc0f74d61cf6455c8d0d37e14 157 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 144 1.3E-35 T 15-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 NJ56_12990 4882a58b220e68912701c894618b213e 260 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 253 3.8E-76 T 15-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 NJ56_12990 4882a58b220e68912701c894618b213e 260 Pfam PF01311 Bacterial export proteins, family 1 14 246 2.4E-68 T 15-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NJ56_12990 4882a58b220e68912701c894618b213e 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 2.2E-30 T 15-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NJ56_12990 4882a58b220e68912701c894618b213e 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 2.2E-30 T 15-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NJ56_12990 4882a58b220e68912701c894618b213e 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 2.2E-30 T 15-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NJ56_12990 4882a58b220e68912701c894618b213e 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 2.2E-30 T 15-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NJ56_15835 3f7ce915efc9d9741e4116e2842e4dff 493 Gene3D G3DSA:1.20.1250.20 6 483 4.4E-113 T 15-10-2018 NJ56_15835 3f7ce915efc9d9741e4116e2842e4dff 493 Pfam PF00854 POT family 82 441 2.4E-91 T 15-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 NJ56_15835 3f7ce915efc9d9741e4116e2842e4dff 493 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 9 483 1.6E-185 T 15-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 NJ56_15835 3f7ce915efc9d9741e4116e2842e4dff 493 Hamap MF_01879 Dipeptide and tripeptide permease B [dtpB]. 3 486 46.472 T 15-10-2018 IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B NJ56_15835 3f7ce915efc9d9741e4116e2842e4dff 493 SUPERFAMILY SSF103473 7 488 1.12E-27 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_15835 3f7ce915efc9d9741e4116e2842e4dff 493 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 145 157 - T 15-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 NJ56_09830 01cea30e63f31696c029be6d35dbf50f 235 SUPERFAMILY SSF118196 1 230 2.75E-84 T 15-10-2018 IPR036413 YaeB-like superfamily NJ56_09830 01cea30e63f31696c029be6d35dbf50f 235 Gene3D G3DSA:3.30.2310.10 148 231 2.6E-22 T 15-10-2018 NJ56_09830 01cea30e63f31696c029be6d35dbf50f 235 Pfam PF01980 Uncharacterised protein family UPF0066 21 142 1.2E-38 T 15-10-2018 IPR023370 YaeB-like, N-terminal domain NJ56_09830 01cea30e63f31696c029be6d35dbf50f 235 Gene3D G3DSA:2.40.30.70 25 147 2.4E-47 T 15-10-2018 IPR036414 YaeB, N-terminal domain superfamily NJ56_09830 01cea30e63f31696c029be6d35dbf50f 235 ProSitePatterns PS01318 TsaA-like domain signature. 87 98 - T 15-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site NJ56_09830 01cea30e63f31696c029be6d35dbf50f 235 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 149 1.2E-56 T 15-10-2018 IPR023370 YaeB-like, N-terminal domain NJ56_00350 27abe72899007178498d8bd6438bb22f 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 7.8E-10 T 15-10-2018 NJ56_00350 27abe72899007178498d8bd6438bb22f 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 111 4.1E-31 T 15-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00350 27abe72899007178498d8bd6438bb22f 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_00350 27abe72899007178498d8bd6438bb22f 238 SUPERFAMILY SSF46548 107 236 7.32E-40 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_00350 27abe72899007178498d8bd6438bb22f 238 SUPERFAMILY SSF54292 1 106 4.51E-31 T 15-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 NJ56_00350 27abe72899007178498d8bd6438bb22f 238 Gene3D G3DSA:3.10.20.30 1 106 1.8E-34 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_00350 27abe72899007178498d8bd6438bb22f 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 230 1.8E-90 T 15-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00350 27abe72899007178498d8bd6438bb22f 238 Gene3D G3DSA:1.10.1060.10 107 238 1.2E-58 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_05005 d8ad537ce96a2e766c44405a270a31d1 281 Gene3D G3DSA:1.10.3720.10 2 274 1.2E-52 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_05005 d8ad537ce96a2e766c44405a270a31d1 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 276 4.0E-21 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_05005 d8ad537ce96a2e766c44405a270a31d1 281 SUPERFAMILY SSF161098 4 277 3.64E-58 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17795 c4c5026ec2063a25bfcdcfbbfbce47c8 289 SUPERFAMILY SSF52540 37 283 8.16E-31 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17795 c4c5026ec2063a25bfcdcfbbfbce47c8 289 Gene3D G3DSA:3.40.50.300 3 287 1.8E-40 T 15-10-2018 NJ56_17795 c4c5026ec2063a25bfcdcfbbfbce47c8 289 Pfam PF13614 AAA domain 35 201 2.0E-18 T 15-10-2018 IPR025669 AAA domain NJ56_16755 92aa908d91dbaaf748ad12fa3ff8aae5 172 Pfam PF07977 FabA-like domain 29 158 1.9E-53 T 15-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 NJ56_16755 92aa908d91dbaaf748ad12fa3ff8aae5 172 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 171 1.2E-93 T 15-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 NJ56_16755 92aa908d91dbaaf748ad12fa3ff8aae5 172 SUPERFAMILY SSF54637 3 169 1.41E-56 T 15-10-2018 IPR029069 HotDog domain superfamily NJ56_16755 92aa908d91dbaaf748ad12fa3ff8aae5 172 Gene3D G3DSA:3.10.129.10 1 172 2.4E-64 T 15-10-2018 NJ56_16755 92aa908d91dbaaf748ad12fa3ff8aae5 172 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 172 51.34 T 15-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 NJ56_16010 5bd4e4ae28812abf10556c6496bb8220 269 Pfam PF13371 Tetratricopeptide repeat 187 258 1.2E-25 T 15-10-2018 NJ56_16010 5bd4e4ae28812abf10556c6496bb8220 269 Pfam PF13369 Transglutaminase-like superfamily 33 184 8.5E-43 T 15-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 NJ56_16010 5bd4e4ae28812abf10556c6496bb8220 269 SUPERFAMILY SSF48452 189 259 3.56E-5 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_03150 9e84c618f8efbce640384a2286162df4 425 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 1.2E-21 T 15-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 NJ56_03150 9e84c618f8efbce640384a2286162df4 425 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 201 422 2.4E-75 T 15-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 NJ56_03150 9e84c618f8efbce640384a2286162df4 425 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 422 9.8E-153 T 15-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 NJ56_03150 9e84c618f8efbce640384a2286162df4 425 Pfam PF07670 Nucleoside recognition 99 195 1.2E-8 T 15-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 NJ56_13355 4748f86614a4a09282d7b3f84c0f18d2 217 Pfam PF05944 Phage small terminase subunit 34 162 3.0E-45 T 15-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 PIRSF PIRSF500134 1 442 2.0E-184 T 15-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 SMART SM00984 320 424 5.5E-50 T 15-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 179 9.1E-62 T 15-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 SUPERFAMILY SSF51735 1 195 4.7E-55 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_15505 618f79fde153938cd06a2566880ecb40 450 Gene3D G3DSA:3.40.50.720 1 202 1.2E-73 T 15-10-2018 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 SUPERFAMILY SSF52413 309 435 3.53E-39 T 15-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 424 4.8E-31 T 15-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 Gene3D G3DSA:3.40.50.720 235 449 9.2E-78 T 15-10-2018 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 1.7E-135 T 15-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 PIRSF PIRSF000124 1 439 1.7E-144 T 15-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 Gene3D G3DSA:1.20.5.100 203 233 2.1E-18 T 15-10-2018 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 295 9.4E-39 T 15-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 NJ56_15505 618f79fde153938cd06a2566880ecb40 450 SUPERFAMILY SSF48179 204 297 1.43E-33 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_11855 9768e94ee22326c5d16354181393ca23 907 SUPERFAMILY SSF47226 819 901 2.36E-17 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_11855 9768e94ee22326c5d16354181393ca23 907 Hamap MF_00980 Phosphotransferase RcsD [rcsD]. 9 902 26.026 T 15-10-2018 IPR030861 Phosphotransferase RcsD GO:0000160|GO:0005887|GO:0009927 NJ56_11855 9768e94ee22326c5d16354181393ca23 907 Gene3D G3DSA:1.10.287.130 465 518 2.8E-27 T 15-10-2018 NJ56_11855 9768e94ee22326c5d16354181393ca23 907 Gene3D G3DSA:3.30.565.10 519 676 2.8E-27 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_11855 9768e94ee22326c5d16354181393ca23 907 SMART SM00388 454 521 9.1E-5 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_11855 9768e94ee22326c5d16354181393ca23 907 SUPERFAMILY SSF47384 440 521 4.9E-6 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_11855 9768e94ee22326c5d16354181393ca23 907 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 568 677 2.2E-15 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_11855 9768e94ee22326c5d16354181393ca23 907 Gene3D G3DSA:3.40.50.11620 689 798 2.1E-38 T 15-10-2018 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily NJ56_11855 9768e94ee22326c5d16354181393ca23 907 Pfam PF01627 Hpt domain 822 901 1.5E-9 T 15-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 NJ56_11855 9768e94ee22326c5d16354181393ca23 907 Pfam PF16359 RcsD-ABL domain 690 791 4.5E-37 T 15-10-2018 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain NJ56_11855 9768e94ee22326c5d16354181393ca23 907 Gene3D G3DSA:1.20.120.160 799 905 1.0E-10 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_11855 9768e94ee22326c5d16354181393ca23 907 SMART SM00387 568 681 1.8E-11 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_11855 9768e94ee22326c5d16354181393ca23 907 SUPERFAMILY SSF55874 510 677 8.25E-22 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_01765 d64475382b0647952c6d8a7aef6cdb0a 255 Pfam PF13230 Glutamine amidotransferases class-II 1 252 3.5E-114 T 15-10-2018 IPR026869 Putative glutamine amidotransferase type 2 NJ56_01765 d64475382b0647952c6d8a7aef6cdb0a 255 SUPERFAMILY SSF56235 2 252 5.11E-52 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_01765 d64475382b0647952c6d8a7aef6cdb0a 255 Gene3D G3DSA:3.60.20.10 1 255 2.7E-97 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 Gene3D G3DSA:3.40.50.300 207 382 1.9E-47 T 15-10-2018 NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 SUPERFAMILY SSF52540 4 166 9.0E-46 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 Pfam PF01926 50S ribosome-binding GTPase 5 119 7.8E-27 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 Pfam PF01926 50S ribosome-binding GTPase 212 329 3.0E-23 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 385 465 2.7E-25 T 15-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 Hamap MF_00195 GTPase Der [der]. 2 468 38.754 T 15-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 158 9.2E-21 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 210 373 9.4E-21 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 SUPERFAMILY SSF52540 137 471 5.97E-59 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 465 3.1E-177 T 15-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 Gene3D G3DSA:3.40.50.300 2 160 2.5E-43 T 15-10-2018 NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 3.9E-9 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 3.9E-9 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 Gene3D G3DSA:3.30.300.20 385 467 1.6E-19 T 15-10-2018 IPR015946 K homology domain-like, alpha/beta NJ56_10635 f0b2f827ce86e39f738f34d24ec2a1b8 496 PIRSF PIRSF006485 1 473 8.8E-178 T 15-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 Pfam PF13242 HAD-hyrolase-like 103 146 6.0E-5 T 15-10-2018 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 196 337 2.3E-64 T 15-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 144 9.6E-44 T 15-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 SUPERFAMILY SSF54211 252 342 2.28E-31 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 226 239 - T 15-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 167 355 36.381 T 15-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 Gene3D G3DSA:3.30.230.40 255 355 1.7E-35 T 15-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 SUPERFAMILY SSF56784 1 158 2.31E-37 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 355 50.799 T 15-10-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 Gene3D G3DSA:3.30.230.40 163 254 4.0E-35 T 15-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 162 1.1E-76 T 15-10-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 SUPERFAMILY SSF54211 167 251 1.39E-30 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 319 331 - T 15-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 148 1.3E-23 T 15-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 NJ56_17250 d6cd69766ad4d0dab2ce8b8cc5e2176b 355 Gene3D G3DSA:3.40.50.1000 1 162 5.5E-43 T 15-10-2018 IPR023214 HAD superfamily NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 ProSitePatterns PS00737 Thiolases signature 2. 382 398 - T 15-10-2018 IPR020613 Thiolase, conserved site GO:0016747 NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 SUPERFAMILY SSF53901 15 295 8.65E-65 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 7 436 7.6E-253 T 15-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 2 436 69.795 T 15-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 ProSitePatterns PS00099 Thiolases active site. 417 430 - T 15-10-2018 IPR020610 Thiolase, active site GO:0016747 NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 15-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 Pfam PF02803 Thiolase, C-terminal domain 296 434 1.8E-36 T 15-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 Gene3D G3DSA:3.40.47.10 7 435 4.2E-116 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 17 434 1.5E-132 T 15-10-2018 IPR002155 Thiolase GO:0016747 NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 PIRSF PIRSF000429 9 436 1.0E-124 T 15-10-2018 IPR002155 Thiolase GO:0016747 NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 SUPERFAMILY SSF53901 297 435 9.84E-32 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_11390 dafb2570955c1ab05c2c5367830cbe25 436 Pfam PF00108 Thiolase, N-terminal domain 15 288 4.4E-63 T 15-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 Gene3D G3DSA:3.90.650.10 419 605 5.3E-58 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1296 21.452 T 15-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1040 1293 4.1E-105 T 15-10-2018 NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 SUPERFAMILY SSF55326 618 815 2.88E-67 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 SMART SM01211 1040 1295 1.3E-159 T 15-10-2018 NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 SUPERFAMILY SSF52317 1036 1294 1.91E-100 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 SUPERFAMILY SSF82697 1 151 1.88E-51 T 15-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 Gene3D G3DSA:3.40.50.880 982 1296 5.4E-140 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 SUPERFAMILY SSF109736 154 219 6.41E-21 T 15-10-2018 NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 Gene3D G3DSA:1.10.8.750 152 212 1.5E-28 T 15-10-2018 NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 SUPERFAMILY SSF56042 822 1034 3.59E-55 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1294 0.0 T 15-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 Gene3D G3DSA:3.30.1330.10 213 418 9.4E-43 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 SUPERFAMILY SSF55326 220 427 2.02E-64 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 SUPERFAMILY SSF56042 430 614 1.36E-52 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 Gene3D G3DSA:3.30.1330.10 613 806 3.3E-25 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 Gene3D G3DSA:3.90.650.10 807 981 5.5E-30 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 835 967 6.2E-13 T 15-10-2018 IPR010918 PurM-like, C-terminal domain NJ56_10420 beb99abf53474793d442d7c7794cedb5 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 431 587 4.4E-27 T 15-10-2018 IPR010918 PurM-like, C-terminal domain NJ56_17255 10eb129bee9e9fc90cf520861f25a636 196 Pfam PF00117 Glutamine amidotransferase class-I 16 194 1.1E-17 T 15-10-2018 IPR017926 Glutamine amidotransferase NJ56_17255 10eb129bee9e9fc90cf520861f25a636 196 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 196 34.15 T 15-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 NJ56_17255 10eb129bee9e9fc90cf520861f25a636 196 SUPERFAMILY SSF52317 3 195 2.21E-54 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_17255 10eb129bee9e9fc90cf520861f25a636 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 72 83 9.7E-5 T 15-10-2018 NJ56_17255 10eb129bee9e9fc90cf520861f25a636 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 9.7E-5 T 15-10-2018 NJ56_17255 10eb129bee9e9fc90cf520861f25a636 196 PIRSF PIRSF000495 1 196 2.4E-63 T 15-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 NJ56_17255 10eb129bee9e9fc90cf520861f25a636 196 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 196 8.6E-71 T 15-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 NJ56_17255 10eb129bee9e9fc90cf520861f25a636 196 Gene3D G3DSA:3.40.50.880 1 196 1.5E-68 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_07530 9235f1bd791a36d120ddd235782eec61 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 159 2.2E-65 T 15-10-2018 IPR023635 Peptide deformylase NJ56_07530 9235f1bd791a36d120ddd235782eec61 170 Pfam PF01327 Polypeptide deformylase 4 152 3.2E-50 T 15-10-2018 IPR023635 Peptide deformylase NJ56_07530 9235f1bd791a36d120ddd235782eec61 170 PIRSF PIRSF004749 1 169 2.4E-55 T 15-10-2018 IPR023635 Peptide deformylase NJ56_07530 9235f1bd791a36d120ddd235782eec61 170 SUPERFAMILY SSF56420 3 164 1.83E-61 T 15-10-2018 IPR036821 Peptide deformylase superfamily NJ56_07530 9235f1bd791a36d120ddd235782eec61 170 PRINTS PR01576 Peptide deformylase signature 101 119 5.4E-38 T 15-10-2018 IPR023635 Peptide deformylase NJ56_07530 9235f1bd791a36d120ddd235782eec61 170 PRINTS PR01576 Peptide deformylase signature 120 149 5.4E-38 T 15-10-2018 IPR023635 Peptide deformylase NJ56_07530 9235f1bd791a36d120ddd235782eec61 170 PRINTS PR01576 Peptide deformylase signature 33 62 5.4E-38 T 15-10-2018 IPR023635 Peptide deformylase NJ56_07530 9235f1bd791a36d120ddd235782eec61 170 PRINTS PR01576 Peptide deformylase signature 89 100 5.4E-38 T 15-10-2018 IPR023635 Peptide deformylase NJ56_07530 9235f1bd791a36d120ddd235782eec61 170 Gene3D G3DSA:3.90.45.10 2 169 6.5E-67 T 15-10-2018 IPR036821 Peptide deformylase superfamily NJ56_07530 9235f1bd791a36d120ddd235782eec61 170 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.342 T 15-10-2018 IPR023635 Peptide deformylase NJ56_04060 c980048c6a1a8af5a76c98873c5841b9 248 Gene3D G3DSA:3.40.1280.10 77 243 5.4E-66 T 15-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NJ56_04060 c980048c6a1a8af5a76c98873c5841b9 248 Gene3D G3DSA:3.30.1330.30 1 75 1.7E-28 T 15-10-2018 IPR029064 50S ribosomal protein L30e-like NJ56_04060 c980048c6a1a8af5a76c98873c5841b9 248 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 1 242 1.2E-88 T 15-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 NJ56_04060 c980048c6a1a8af5a76c98873c5841b9 248 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 2 243 43.971 T 15-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB NJ56_04060 c980048c6a1a8af5a76c98873c5841b9 248 Pfam PF00588 SpoU rRNA Methylase family 96 236 2.2E-39 T 15-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 NJ56_04060 c980048c6a1a8af5a76c98873c5841b9 248 SUPERFAMILY SSF55315 2 75 9.53E-20 T 15-10-2018 IPR029064 50S ribosomal protein L30e-like NJ56_04060 c980048c6a1a8af5a76c98873c5841b9 248 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 4 76 5.3E-19 T 15-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 NJ56_04060 c980048c6a1a8af5a76c98873c5841b9 248 SMART SM00967 4 80 2.9E-21 T 15-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 NJ56_04060 c980048c6a1a8af5a76c98873c5841b9 248 SUPERFAMILY SSF75217 68 243 4.58E-49 T 15-10-2018 IPR029028 Alpha/beta knot methyltransferases NJ56_08815 5f4ce5cad73aea05603b16950282466b 141 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 16 136 5.5E-64 T 15-10-2018 IPR014170 TonB system transport protein ExbD type-1 GO:0016020|GO:0055085 NJ56_08815 5f4ce5cad73aea05603b16950282466b 141 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 133 1.9E-29 T 15-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 NJ56_08815 5f4ce5cad73aea05603b16950282466b 141 Gene3D G3DSA:3.30.420.270 63 132 2.1E-27 T 15-10-2018 NJ56_12915 9ffb242e2446390d86c8d79ba2db4d09 136 Pfam PF06366 Flagellar protein FlhE 31 136 4.5E-35 T 15-10-2018 IPR009420 Flagellar protein FlhE NJ56_16300 0cbc807de5f94b2a80b097cb1f3d5915 580 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_16300 0cbc807de5f94b2a80b097cb1f3d5915 580 Gene3D G3DSA:3.40.50.300 327 576 1.2E-68 T 15-10-2018 NJ56_16300 0cbc807de5f94b2a80b097cb1f3d5915 580 SUPERFAMILY SSF90123 10 313 3.14E-46 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_16300 0cbc807de5f94b2a80b097cb1f3d5915 580 Pfam PF00005 ABC transporter 350 496 1.1E-31 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_16300 0cbc807de5f94b2a80b097cb1f3d5915 580 Gene3D G3DSA:1.20.1560.10 10 317 3.4E-37 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_16300 0cbc807de5f94b2a80b097cb1f3d5915 580 Pfam PF00664 ABC transporter transmembrane region 27 280 1.2E-14 T 15-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 NJ56_16300 0cbc807de5f94b2a80b097cb1f3d5915 580 SUPERFAMILY SSF52540 321 556 7.67E-65 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16300 0cbc807de5f94b2a80b097cb1f3d5915 580 SMART SM00382 358 544 4.3E-17 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_16300 0cbc807de5f94b2a80b097cb1f3d5915 580 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 18 558 4.4E-237 T 15-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 NJ56_08610 d3c931aee1ec92856c28c27b213f48c5 138 Pfam PF12680 SnoaL-like domain 6 106 2.9E-10 T 15-10-2018 IPR037401 SnoaL-like domain NJ56_08610 d3c931aee1ec92856c28c27b213f48c5 138 SUPERFAMILY SSF54427 3 117 1.37E-18 T 15-10-2018 IPR032710 NTF2-like domain superfamily NJ56_08610 d3c931aee1ec92856c28c27b213f48c5 138 Gene3D G3DSA:3.10.450.50 1 123 6.4E-16 T 15-10-2018 NJ56_15955 dff775f562191656cac89fd1e6c5b568 187 Pfam PF07273 Protein of unknown function (DUF1439) 29 180 2.1E-56 T 15-10-2018 IPR010835 Protein of unknown function DUF1439 NJ56_15955 dff775f562191656cac89fd1e6c5b568 187 Gene3D G3DSA:3.15.10.40 17 187 2.9E-69 T 15-10-2018 NJ56_05305 08ec570dbd9ff178fc139e317a42a18d 397 SUPERFAMILY SSF48452 97 388 5.4E-9 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_05305 08ec570dbd9ff178fc139e317a42a18d 397 Gene3D G3DSA:1.25.40.10 91 391 1.2E-10 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_05305 08ec570dbd9ff178fc139e317a42a18d 397 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 2 386 2.0E-126 T 15-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 NJ56_05305 08ec570dbd9ff178fc139e317a42a18d 397 Pfam PF07219 HemY protein N-terminus 26 132 7.2E-32 T 15-10-2018 IPR010817 HemY, N-terminal NJ56_08710 3d26d72e77f4ed5a3bfce63481c97baf 386 SUPERFAMILY SSF52440 174 279 8.63E-42 T 15-10-2018 IPR016185 Pre-ATP-grasp domain superfamily NJ56_08710 3d26d72e77f4ed5a3bfce63481c97baf 386 Gene3D G3DSA:3.30.1490.330 263 343 1.4E-28 T 15-10-2018 NJ56_08710 3d26d72e77f4ed5a3bfce63481c97baf 386 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 384 6.1E-164 T 15-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain NJ56_08710 3d26d72e77f4ed5a3bfce63481c97baf 386 SUPERFAMILY SSF56059 1 383 1.29E-94 T 15-10-2018 NJ56_17680 64b71b361f67e41a3c5c9d51f8ad5f8c 462 Pfam PF06122 Conjugative relaxosome accessory transposon protein 27 367 2.2E-70 T 15-10-2018 IPR010927 Type IV conjugative transfer system protein TraH NJ56_05700 c45d3402c5822aa7d3ec86fafcaa1a45 291 TIGRFAM TIGR02223 ftsN: cell division protein FtsN 2 285 1.5E-78 T 15-10-2018 IPR011930 Cell division protein FtsN GO:0005515 NJ56_05700 c45d3402c5822aa7d3ec86fafcaa1a45 291 Gene3D G3DSA:3.30.70.1070 212 291 1.2E-31 T 15-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 NJ56_05700 c45d3402c5822aa7d3ec86fafcaa1a45 291 Pfam PF05036 Sporulation related domain 217 285 3.9E-17 T 15-10-2018 IPR007730 Sporulation-like domain GO:0042834 NJ56_05700 c45d3402c5822aa7d3ec86fafcaa1a45 291 Hamap MF_02039 Cell division protein FtsN [ftsN]. 33 291 34.332 T 15-10-2018 IPR011930 Cell division protein FtsN GO:0005515 NJ56_05700 c45d3402c5822aa7d3ec86fafcaa1a45 291 SUPERFAMILY SSF110997 217 286 6.02E-20 T 15-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 SUPERFAMILY SSF53067 153 340 4.08E-50 T 15-10-2018 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 Pfam PF06723 MreB/Mbl protein 11 338 9.8E-150 T 15-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 1.2E-65 T 15-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 1.2E-65 T 15-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 1.2E-65 T 15-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 1.2E-65 T 15-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 1.2E-65 T 15-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.30.420.40 158 321 6.2E-130 T 15-10-2018 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 SUPERFAMILY SSF53067 9 152 8.89E-38 T 15-10-2018 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 9.1E-170 T 15-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.30.420.40 14 331 6.2E-130 T 15-10-2018 NJ56_08000 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.90.640.10 190 263 6.2E-130 T 15-10-2018 NJ56_11590 34b26d6a342037b5ec2e92bd71cd8ba3 183 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 160 5.6E-24 T 15-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 NJ56_11590 34b26d6a342037b5ec2e92bd71cd8ba3 183 ProSitePatterns PS01269 Uncharacterized protein family UPF0025 signature. 120 144 - T 15-10-2018 IPR020935 Phosphodiesterase YfcE, conserved site NJ56_11590 34b26d6a342037b5ec2e92bd71cd8ba3 183 Gene3D G3DSA:3.60.21.10 1 183 7.1E-69 T 15-10-2018 IPR029052 Metallo-dependent phosphatase-like NJ56_11590 34b26d6a342037b5ec2e92bd71cd8ba3 183 SUPERFAMILY SSF56300 1 163 1.28E-37 T 15-10-2018 NJ56_11590 34b26d6a342037b5ec2e92bd71cd8ba3 183 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 167 4.7E-39 T 15-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 NJ56_00460 6a244d09430dd1a7588338112b7fe0ee 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 227 2.9E-22 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_00460 6a244d09430dd1a7588338112b7fe0ee 234 SMART SM00448 6 116 6.0E-38 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00460 6a244d09430dd1a7588338112b7fe0ee 234 Gene3D G3DSA:1.10.10.10 126 232 9.4E-31 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_00460 6a244d09430dd1a7588338112b7fe0ee 234 Pfam PF00072 Response regulator receiver domain 8 117 1.7E-27 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00460 6a244d09430dd1a7588338112b7fe0ee 234 Gene3D G3DSA:3.40.50.2300 1 125 3.9E-35 T 15-10-2018 NJ56_00460 6a244d09430dd1a7588338112b7fe0ee 234 SMART SM00862 151 227 1.4E-22 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_00460 6a244d09430dd1a7588338112b7fe0ee 234 SUPERFAMILY SSF52172 4 179 8.2E-39 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_00145 6cc802993314bf2a5c79ceb29c05fa36 333 Hamap MF_01605 6-phosphogluconolactonase [pgl]. 1 331 56.34 T 15-10-2018 IPR022528 6-phosphogluconolactonase, YbhE-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 NJ56_00145 6cc802993314bf2a5c79ceb29c05fa36 333 Gene3D G3DSA:2.130.10.10 1 332 6.6E-121 T 15-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 NJ56_00145 6cc802993314bf2a5c79ceb29c05fa36 333 Pfam PF10282 Lactonase, 7-bladed beta-propeller 6 327 9.8E-89 T 15-10-2018 IPR019405 Lactonase, 7-bladed beta propeller NJ56_00145 6cc802993314bf2a5c79ceb29c05fa36 333 SUPERFAMILY SSF50974 20 328 1.2E-52 T 15-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 NJ56_12385 3a31e684977b2c36da789ef30dabdd4c 660 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 42 - T 15-10-2018 IPR010916 TonB box, conserved site NJ56_12385 3a31e684977b2c36da789ef30dabdd4c 660 Pfam PF00593 TonB dependent receptor 223 658 2.6E-60 T 15-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel NJ56_12385 3a31e684977b2c36da789ef30dabdd4c 660 Gene3D G3DSA:2.40.170.20 169 660 2.6E-140 T 15-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NJ56_12385 3a31e684977b2c36da789ef30dabdd4c 660 SUPERFAMILY SSF56935 35 660 2.04E-125 T 15-10-2018 NJ56_12385 3a31e684977b2c36da789ef30dabdd4c 660 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 158 1.7E-27 T 15-10-2018 IPR012910 TonB-dependent receptor, plug domain NJ56_12385 3a31e684977b2c36da789ef30dabdd4c 660 Gene3D G3DSA:2.170.130.10 33 163 9.7E-40 T 15-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily NJ56_14665 327935d80eb97faf0a28f0bac6f51168 262 Gene3D G3DSA:3.40.50.720 1 262 2.5E-61 T 15-10-2018 NJ56_14665 327935d80eb97faf0a28f0bac6f51168 262 SUPERFAMILY SSF51735 6 253 7.0E-61 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_14665 327935d80eb97faf0a28f0bac6f51168 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 252 9.6E-84 T 15-10-2018 NJ56_14665 327935d80eb97faf0a28f0bac6f51168 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.3E-8 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_14665 327935d80eb97faf0a28f0bac6f51168 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 3.3E-8 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_14665 327935d80eb97faf0a28f0bac6f51168 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 3.3E-8 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_14665 327935d80eb97faf0a28f0bac6f51168 262 PIRSF PIRSF000094 1 260 1.2E-122 T 15-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 NJ56_06320 846426e28287950d30379502628dc265 245 Gene3D G3DSA:1.10.3720.10 6 242 6.4E-46 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_06320 846426e28287950d30379502628dc265 245 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 17 84 1.5E-16 T 15-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 NJ56_06320 846426e28287950d30379502628dc265 245 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 229 9.7E-14 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_06320 846426e28287950d30379502628dc265 245 SUPERFAMILY SSF161098 17 226 6.67E-39 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_06235 9e920c813071fa268652f43b24db45dd 274 Gene3D G3DSA:1.20.120.220 98 274 9.6E-70 T 15-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06235 9e920c813071fa268652f43b24db45dd 274 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 274 15.927 T 15-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06235 9e920c813071fa268652f43b24db45dd 274 PRINTS PR00123 ATP synthase A subunit signature 254 269 7.9E-15 T 15-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06235 9e920c813071fa268652f43b24db45dd 274 PRINTS PR00123 ATP synthase A subunit signature 206 228 7.9E-15 T 15-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06235 9e920c813071fa268652f43b24db45dd 274 PRINTS PR00123 ATP synthase A subunit signature 107 123 7.9E-15 T 15-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06235 9e920c813071fa268652f43b24db45dd 274 ProSitePatterns PS00449 ATP synthase a subunit signature. 209 218 - T 15-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06235 9e920c813071fa268652f43b24db45dd 274 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 41 269 2.2E-43 T 15-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06235 9e920c813071fa268652f43b24db45dd 274 SUPERFAMILY SSF81336 98 268 1.31E-48 T 15-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06235 9e920c813071fa268652f43b24db45dd 274 Pfam PF00119 ATP synthase A chain 50 268 3.9E-54 T 15-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 Gene3D G3DSA:1.10.3370.10 13 429 3.7E-164 T 15-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 SUPERFAMILY SSF103491 16 424 7.32E-134 T 15-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 PIRSF PIRSF004557 11 441 1.6E-123 T 15-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 15-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 Pfam PF00344 SecY translocase 76 417 1.1E-119 T 15-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 429 1.0E-140 T 15-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 1.8E-98 T 15-10-2018 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 315 337 1.8E-98 T 15-10-2018 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 1.8E-98 T 15-10-2018 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 1.8E-98 T 15-10-2018 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 1.8E-98 T 15-10-2018 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 1.8E-98 T 15-10-2018 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 1.8E-98 T 15-10-2018 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 1.8E-98 T 15-10-2018 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 272 291 1.8E-98 T 15-10-2018 NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 10 433 29.944 T 15-10-2018 IPR026593 Protein translocase subunit SecY NJ56_07465 8c9156ef90b2c4cc78f794c235621e5f 443 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 15-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 Gene3D G3DSA:1.20.1260.10 1 157 6.8E-71 T 15-10-2018 IPR012347 Ferritin-like NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 15-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 PRINTS PR00601 Bacterioferritin signature 107 127 1.3E-74 T 15-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 PRINTS PR00601 Bacterioferritin signature 128 149 1.3E-74 T 15-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 PRINTS PR00601 Bacterioferritin signature 3 22 1.3E-74 T 15-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 PRINTS PR00601 Bacterioferritin signature 23 43 1.3E-74 T 15-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 PRINTS PR00601 Bacterioferritin signature 86 106 1.3E-74 T 15-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 PRINTS PR00601 Bacterioferritin signature 44 64 1.3E-74 T 15-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 PRINTS PR00601 Bacterioferritin signature 65 85 1.3E-74 T 15-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 PIRSF PIRSF002560 1 157 1.5E-70 T 15-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 SUPERFAMILY SSF47240 1 156 1.05E-52 T 15-10-2018 IPR009078 Ferritin-like superfamily NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 1.3E-79 T 15-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NJ56_07355 e0f4ec0d9a4324fa449521d6e5123b6c 157 Pfam PF00210 Ferritin-like domain 8 143 5.8E-39 T 15-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 Gene3D G3DSA:1.10.3860.10 1 427 4.1E-137 T 15-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 1.7E-52 T 15-10-2018 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 1.7E-52 T 15-10-2018 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 PRINTS PR00173 Glutamate-aspartate symporter signature 365 385 1.7E-52 T 15-10-2018 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 1.7E-52 T 15-10-2018 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 1.7E-52 T 15-10-2018 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 1.7E-52 T 15-10-2018 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 1.7E-52 T 15-10-2018 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 1.7E-52 T 15-10-2018 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 SUPERFAMILY SSF118215 8 412 1.57E-124 T 15-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 Pfam PF00375 Sodium:dicarboxylate symporter family 8 411 1.3E-117 T 15-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 15-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 Hamap MF_02063 Proton/glutamate-aspartate symporter [gltP]. 1 428 45.591 T 15-10-2018 IPR034703 Proton/glutamate-aspartate symporter GltP GO:0006835|GO:0015293|GO:0016021 NJ56_04630 6120b939e79490e0ab8546504aa82ee2 438 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 15-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site NJ56_06935 edda54bb2c7a67562b039c3cf1f2c848 252 Pfam PF00455 DeoR C terminal sensor domain 76 232 9.0E-54 T 15-10-2018 IPR014036 DeoR C-terminal sensor domain NJ56_06935 edda54bb2c7a67562b039c3cf1f2c848 252 SMART SM01134 72 233 5.8E-72 T 15-10-2018 NJ56_06935 edda54bb2c7a67562b039c3cf1f2c848 252 SUPERFAMILY SSF100950 74 233 1.01E-29 T 15-10-2018 IPR037171 NagB/RpiA transferase-like NJ56_06935 edda54bb2c7a67562b039c3cf1f2c848 252 Gene3D G3DSA:1.10.10.10 1 58 2.0E-8 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_06935 edda54bb2c7a67562b039c3cf1f2c848 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 15-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 NJ56_06935 edda54bb2c7a67562b039c3cf1f2c848 252 Gene3D G3DSA:3.30.750.70 70 133 2.7E-10 T 15-10-2018 NJ56_06935 edda54bb2c7a67562b039c3cf1f2c848 252 SMART SM00420 6 58 5.2E-27 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_06935 edda54bb2c7a67562b039c3cf1f2c848 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 1.1E-24 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_06935 edda54bb2c7a67562b039c3cf1f2c848 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 5.7E-12 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_06935 edda54bb2c7a67562b039c3cf1f2c848 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 5.7E-12 T 15-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 NJ56_06935 edda54bb2c7a67562b039c3cf1f2c848 252 SUPERFAMILY SSF46785 3 73 1.62E-16 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_14440 136c0ec8ae97e1d1f32ad5d521853878 138 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 134 3.9E-44 T 15-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 NJ56_14440 136c0ec8ae97e1d1f32ad5d521853878 138 SUPERFAMILY SSF54637 6 133 4.23E-29 T 15-10-2018 IPR029069 HotDog domain superfamily NJ56_14440 136c0ec8ae97e1d1f32ad5d521853878 138 Pfam PF03061 Thioesterase superfamily 50 127 4.4E-15 T 15-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 NJ56_14440 136c0ec8ae97e1d1f32ad5d521853878 138 Gene3D G3DSA:3.10.129.10 1 138 7.9E-58 T 15-10-2018 NJ56_16790 882ce901263de5004af146aae6ef4609 370 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 323 331 - T 15-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 NJ56_16790 882ce901263de5004af146aae6ef4609 370 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 292 362 4.6E-14 T 15-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NJ56_16790 882ce901263de5004af146aae6ef4609 370 Pfam PF03473 MOSC domain 140 262 1.6E-28 T 15-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 NJ56_16790 882ce901263de5004af146aae6ef4609 370 SUPERFAMILY SSF50800 3 264 2.09E-16 T 15-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily NJ56_16790 882ce901263de5004af146aae6ef4609 370 SUPERFAMILY SSF141673 5 133 2.75E-27 T 15-10-2018 NJ56_16790 882ce901263de5004af146aae6ef4609 370 Gene3D G3DSA:3.10.20.30 276 369 5.7E-20 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_16790 882ce901263de5004af146aae6ef4609 370 Pfam PF03476 MOSC N-terminal beta barrel domain 3 117 5.0E-26 T 15-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 NJ56_16790 882ce901263de5004af146aae6ef4609 370 SUPERFAMILY SSF54292 282 367 8.65E-23 T 15-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Gene3D G3DSA:3.40.920.10 416 624 1.7E-73 T 15-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 SMART SM00890 622 679 6.8E-30 T 15-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Gene3D G3DSA:3.40.50.970 793 1170 9.1E-149 T 15-10-2018 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Gene3D G3DSA:3.40.50.920 255 414 1.0E-53 T 15-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 956 1068 1.7E-8 T 15-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Pfam PF13484 4Fe-4S double cluster binding domain 689 757 3.0E-9 T 15-10-2018 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 SUPERFAMILY SSF52518 794 1163 4.96E-117 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 426 607 7.9E-33 T 15-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 13 243 3.5E-80 T 15-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 SUPERFAMILY SSF52922 255 409 5.18E-41 T 15-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Gene3D G3DSA:3.30.70.20 669 791 1.2E-36 T 15-10-2018 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 SUPERFAMILY SSF54862 665 837 3.89E-21 T 15-10-2018 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Gene3D G3DSA:4.10.780.10 633 668 1.7E-7 T 15-10-2018 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 265 350 3.8E-14 T 15-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 SUPERFAMILY SSF52518 2 254 3.24E-72 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 PIRSF PIRSF000159 1 1176 0.0 T 15-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Pfam PF10371 Domain of unknown function 627 678 1.3E-23 T 15-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 1 1167 0.0 T 15-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 745 756 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 Gene3D G3DSA:3.40.50.970 1 254 1.3E-105 T 15-10-2018 NJ56_14790 4056842cf6a85e177ce76a57e86c4f83 1176 SUPERFAMILY SSF53323 417 668 5.62E-74 T 15-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 SUPERFAMILY SSF53774 3 335 3.4E-111 T 15-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 84 94 - T 15-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 SMART SM00870 5 323 1.0E-138 T 15-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 4.5E-17 T 15-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 PRINTS PR00139 Asparaginase/glutaminase family signature 83 101 4.5E-17 T 15-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 PRINTS PR00139 Asparaginase/glutaminase family signature 260 278 4.5E-17 T 15-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 Pfam PF00710 Asparaginase, N-terminal 6 187 4.4E-63 T 15-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 Gene3D G3DSA:3.40.50.40 209 337 5.1E-48 T 15-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 15-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 3 335 4.8E-128 T 15-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 PIRSF PIRSF500176 2 332 6.0E-113 T 15-10-2018 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 PIRSF PIRSF001220 1 334 9.1E-97 T 15-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 NJ56_15590 5e21fcd4cee4b58aec52fd863b54f885 338 Gene3D G3DSA:3.40.50.1170 1 208 9.6E-90 T 15-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 NJ56_05240 e7271088c36cb97b78f400dafd37bc01 406 Hamap MF_00677 UPF0261 protein . 2 402 51.315 T 15-10-2018 IPR008322 Uncharacterised protein family UPF0261 NJ56_05240 e7271088c36cb97b78f400dafd37bc01 406 Pfam PF06792 Uncharacterised protein family (UPF0261) 5 400 1.1E-158 T 15-10-2018 IPR008322 Uncharacterised protein family UPF0261 NJ56_05240 e7271088c36cb97b78f400dafd37bc01 406 PIRSF PIRSF033271 1 403 4.9E-192 T 15-10-2018 IPR008322 Uncharacterised protein family UPF0261 NJ56_05240 e7271088c36cb97b78f400dafd37bc01 406 Gene3D G3DSA:3.40.50.12020 1 176 5.2E-58 T 15-10-2018 NJ56_05240 e7271088c36cb97b78f400dafd37bc01 406 Gene3D G3DSA:3.40.50.12030 183 402 3.0E-85 T 15-10-2018 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 Gene3D G3DSA:1.10.10.10 169 244 5.7E-18 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 12 330 39.976 T 15-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 Pfam PF04545 Sigma-70, region 4 264 317 2.7E-15 T 15-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 Gene3D G3DSA:1.10.601.10 86 168 5.5E-46 T 15-10-2018 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 SUPERFAMILY SSF88659 169 243 8.72E-15 T 15-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 Gene3D G3DSA:1.10.10.10 246 322 1.0E-19 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 SUPERFAMILY SSF88946 58 166 1.96E-45 T 15-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 120 133 - T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 Pfam PF04539 Sigma-70 region 3 176 250 2.5E-20 T 15-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 50 330 3.6E-144 T 15-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 289 315 - T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 93 319 4.2E-35 T 15-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 PRINTS PR00046 Major sigma-70 factor signature 268 280 2.5E-27 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 PRINTS PR00046 Major sigma-70 factor signature 304 315 2.5E-27 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 PRINTS PR00046 Major sigma-70 factor signature 289 304 2.5E-27 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 PRINTS PR00046 Major sigma-70 factor signature 120 133 2.5E-27 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 PRINTS PR00046 Major sigma-70 factor signature 144 152 2.5E-27 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 Pfam PF04542 Sigma-70 region 2 96 165 3.2E-21 T 15-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 SUPERFAMILY SSF88659 227 324 1.68E-23 T 15-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like NJ56_02285 26b487c8d4ec6e8e2438c22457396d66 332 Pfam PF00140 Sigma-70 factor, region 1.2 58 89 5.1E-11 T 15-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NJ56_05140 55b0977903e1c395377594e096b91e31 742 PRINTS PR00941 Cadmium-transporting ATPase signature 242 258 1.0E-5 T 15-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 NJ56_05140 55b0977903e1c395377594e096b91e31 742 PRINTS PR00941 Cadmium-transporting ATPase signature 52 61 1.0E-5 T 15-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 NJ56_05140 55b0977903e1c395377594e096b91e31 742 PRINTS PR00941 Cadmium-transporting ATPase signature 222 242 1.0E-5 T 15-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 NJ56_05140 55b0977903e1c395377594e096b91e31 742 PRINTS PR00941 Cadmium-transporting ATPase signature 63 84 1.0E-5 T 15-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 NJ56_05140 55b0977903e1c395377594e096b91e31 742 Gene3D G3DSA:3.40.50.1000 419 685 6.2E-82 T 15-10-2018 IPR023214 HAD superfamily NJ56_05140 55b0977903e1c395377594e096b91e31 742 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 440 446 - T 15-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 NJ56_05140 55b0977903e1c395377594e096b91e31 742 SUPERFAMILY SSF81653 240 337 2.35E-20 T 15-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 NJ56_05140 55b0977903e1c395377594e096b91e31 742 Gene3D G3DSA:2.70.150.20 237 342 1.2E-31 T 15-10-2018 NJ56_05140 55b0977903e1c395377594e096b91e31 742 SUPERFAMILY SSF81665 190 722 1.2E-17 T 15-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 NJ56_05140 55b0977903e1c395377594e096b91e31 742 Pfam PF00702 haloacid dehalogenase-like hydrolase 434 647 2.1E-38 T 15-10-2018 NJ56_05140 55b0977903e1c395377594e096b91e31 742 SUPERFAMILY SSF55008 48 111 5.37E-15 T 15-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 NJ56_05140 55b0977903e1c395377594e096b91e31 742 ProSitePatterns PS01229 Hypothetical cof family signature 2. 634 656 - T 15-10-2018 NJ56_05140 55b0977903e1c395377594e096b91e31 742 Gene3D G3DSA:3.40.1110.10 449 568 6.2E-82 T 15-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 NJ56_05140 55b0977903e1c395377594e096b91e31 742 SUPERFAMILY SSF56784 436 734 2.09E-52 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_05140 55b0977903e1c395377594e096b91e31 742 Gene3D G3DSA:3.30.70.100 47 114 2.3E-17 T 15-10-2018 NJ56_05140 55b0977903e1c395377594e096b91e31 742 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 210 712 3.5E-81 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_05140 55b0977903e1c395377594e096b91e31 742 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 187 736 1.5E-177 T 15-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 NJ56_05140 55b0977903e1c395377594e096b91e31 742 ProSitePatterns PS01047 Heavy-metal-associated domain. 54 83 - T 15-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 NJ56_05140 55b0977903e1c395377594e096b91e31 742 Pfam PF00122 E1-E2 ATPase 238 417 1.5E-45 T 15-10-2018 NJ56_05140 55b0977903e1c395377594e096b91e31 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 287 301 6.5E-29 T 15-10-2018 NJ56_05140 55b0977903e1c395377594e096b91e31 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 438 452 6.5E-29 T 15-10-2018 NJ56_05140 55b0977903e1c395377594e096b91e31 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 561 572 6.5E-29 T 15-10-2018 NJ56_05140 55b0977903e1c395377594e096b91e31 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 657 669 6.5E-29 T 15-10-2018 NJ56_05140 55b0977903e1c395377594e096b91e31 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 583 593 6.5E-29 T 15-10-2018 NJ56_05140 55b0977903e1c395377594e096b91e31 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 634 653 6.5E-29 T 15-10-2018 NJ56_05140 55b0977903e1c395377594e096b91e31 742 Pfam PF00403 Heavy-metal-associated domain 53 109 3.7E-11 T 15-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 NJ56_11380 c196b1006f05d94064f8c67bef3b64d8 424 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 19 424 4.9E-137 T 15-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) NJ56_11380 c196b1006f05d94064f8c67bef3b64d8 424 Gene3D G3DSA:2.40.160.60 28 424 5.6E-140 T 15-10-2018 NJ56_11380 c196b1006f05d94064f8c67bef3b64d8 424 SUPERFAMILY SSF56935 28 424 2.43E-103 T 15-10-2018 NJ56_13675 591a795947f23b4b5fbe2d87cf56cbaf 290 SUPERFAMILY SSF55174 8 62 6.39E-12 T 15-10-2018 NJ56_13675 591a795947f23b4b5fbe2d87cf56cbaf 290 Pfam PF01479 S4 domain 8 46 9.9E-9 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_13675 591a795947f23b4b5fbe2d87cf56cbaf 290 Gene3D G3DSA:3.30.70.1560 134 207 5.9E-56 T 15-10-2018 NJ56_13675 591a795947f23b4b5fbe2d87cf56cbaf 290 Gene3D G3DSA:3.10.290.10 1 62 3.9E-22 T 15-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 NJ56_13675 591a795947f23b4b5fbe2d87cf56cbaf 290 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 225 2.1E-52 T 15-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 NJ56_13675 591a795947f23b4b5fbe2d87cf56cbaf 290 SMART SM00363 7 63 1.2E-7 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_13675 591a795947f23b4b5fbe2d87cf56cbaf 290 SUPERFAMILY SSF55120 69 229 3.2E-37 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_13675 591a795947f23b4b5fbe2d87cf56cbaf 290 Gene3D G3DSA:3.30.70.580 70 228 5.9E-56 T 15-10-2018 NJ56_13675 591a795947f23b4b5fbe2d87cf56cbaf 290 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 15-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 NJ56_13675 591a795947f23b4b5fbe2d87cf56cbaf 290 Pfam PF00849 RNA pseudouridylate synthase 69 195 1.1E-14 T 15-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_11515 2fbd20cc6082d2dba19960a8088ccf1d 277 PIRSF PIRSF001430 16 267 2.7E-77 T 15-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_11515 2fbd20cc6082d2dba19960a8088ccf1d 277 Gene3D G3DSA:3.30.70.660 120 257 1.9E-50 T 15-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 NJ56_11515 2fbd20cc6082d2dba19960a8088ccf1d 277 Gene3D G3DSA:3.30.70.580 14 119 4.5E-39 T 15-10-2018 NJ56_11515 2fbd20cc6082d2dba19960a8088ccf1d 277 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 16 258 34.875 T 15-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_11515 2fbd20cc6082d2dba19960a8088ccf1d 277 SUPERFAMILY SSF55120 17 272 1.73E-90 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_11515 2fbd20cc6082d2dba19960a8088ccf1d 277 Pfam PF01416 tRNA pseudouridine synthase 157 259 2.8E-29 T 15-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_11515 2fbd20cc6082d2dba19960a8088ccf1d 277 Pfam PF01416 tRNA pseudouridine synthase 23 117 2.8E-9 T 15-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_11515 2fbd20cc6082d2dba19960a8088ccf1d 277 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 17 253 1.7E-76 T 15-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_11085 29e5b0f3e493f81f8b9e104fef8f46fa 296 Pfam PF00701 Dihydrodipicolinate synthetase family 4 289 1.2E-52 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_11085 29e5b0f3e493f81f8b9e104fef8f46fa 296 SMART SM01130 3 294 2.0E-69 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_11085 29e5b0f3e493f81f8b9e104fef8f46fa 296 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 40 57 - T 15-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_11085 29e5b0f3e493f81f8b9e104fef8f46fa 296 Gene3D G3DSA:3.20.20.70 1 295 5.8E-103 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_11085 29e5b0f3e493f81f8b9e104fef8f46fa 296 PIRSF PIRSF001365 1 296 7.3E-67 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_11085 29e5b0f3e493f81f8b9e104fef8f46fa 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 3.6E-7 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_11085 29e5b0f3e493f81f8b9e104fef8f46fa 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 3.6E-7 T 15-10-2018 IPR002220 DapA-like GO:0016829 NJ56_11085 29e5b0f3e493f81f8b9e104fef8f46fa 296 SUPERFAMILY SSF51569 1 292 4.71E-73 T 15-10-2018 NJ56_11420 d744cc5135510a8aad99425251dab3e0 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 15-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 NJ56_11420 d744cc5135510a8aad99425251dab3e0 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 15-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 NJ56_11420 d744cc5135510a8aad99425251dab3e0 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 354 37.892 T 15-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 NJ56_11420 d744cc5135510a8aad99425251dab3e0 361 Pfam PF01264 Chorismate synthase 10 345 9.8E-144 T 15-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 NJ56_11420 d744cc5135510a8aad99425251dab3e0 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 4.5E-140 T 15-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 NJ56_11420 d744cc5135510a8aad99425251dab3e0 361 Gene3D G3DSA:3.60.150.10 1 360 3.7E-159 T 15-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 NJ56_11420 d744cc5135510a8aad99425251dab3e0 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 15-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 NJ56_11420 d744cc5135510a8aad99425251dab3e0 361 PIRSF PIRSF001456 3 358 4.6E-142 T 15-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 NJ56_11420 d744cc5135510a8aad99425251dab3e0 361 SUPERFAMILY SSF103263 4 351 4.45E-149 T 15-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 NJ56_04465 5ff8f632a9ca8ed87af903b0b1734c9d 346 SUPERFAMILY SSF52540 85 322 5.87E-46 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04465 5ff8f632a9ca8ed87af903b0b1734c9d 346 SMART SM00382 123 255 1.3E-15 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_04465 5ff8f632a9ca8ed87af903b0b1734c9d 346 Gene3D G3DSA:3.40.50.300 78 269 3.1E-46 T 15-10-2018 NJ56_04465 5ff8f632a9ca8ed87af903b0b1734c9d 346 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 127 251 6.2E-30 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_02785 b779dbc986cc603837f5b19b7e29b8e8 164 Gene3D G3DSA:3.30.70.1150 81 158 1.0E-26 T 15-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal NJ56_02785 b779dbc986cc603837f5b19b7e29b8e8 164 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 2 77 6.0E-36 T 15-10-2018 NJ56_02785 b779dbc986cc603837f5b19b7e29b8e8 164 Gene3D G3DSA:3.30.70.260 1 80 3.5E-35 T 15-10-2018 NJ56_02785 b779dbc986cc603837f5b19b7e29b8e8 164 SUPERFAMILY SSF55021 3 75 4.23E-22 T 15-10-2018 NJ56_02785 b779dbc986cc603837f5b19b7e29b8e8 164 Pfam PF10369 Small subunit of acetolactate synthase 85 159 3.3E-23 T 15-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 NJ56_02785 b779dbc986cc603837f5b19b7e29b8e8 164 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 3 160 3.2E-67 T 15-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 NJ56_02785 b779dbc986cc603837f5b19b7e29b8e8 164 SUPERFAMILY SSF55021 80 163 1.72E-25 T 15-10-2018 NJ56_02785 b779dbc986cc603837f5b19b7e29b8e8 164 Pfam PF01842 ACT domain 5 69 3.1E-15 T 15-10-2018 IPR002912 ACT domain NJ56_09200 747620154367c0b2b503123808689624 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 2.9E-82 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 2.9E-82 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 2.9E-82 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 2.9E-82 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 2.9E-82 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 2.9E-82 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 2.9E-82 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 2.9E-82 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 2.9E-82 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 Pfam PF00162 Phosphoglycerate kinase 6 373 1.2E-137 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 38.963 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 PIRSF PIRSF000724 1 387 6.6E-132 T 15-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 SUPERFAMILY SSF53748 4 383 6.01E-143 T 15-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 15-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 Gene3D G3DSA:3.40.50.1260 10 378 1.0E-153 T 15-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_09200 747620154367c0b2b503123808689624 387 Gene3D G3DSA:3.40.50.1260 165 373 1.0E-153 T 15-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_14670 6813efdccf2e17cebc7668daab73f2dc 271 Pfam PF00005 ABC transporter 31 178 8.2E-34 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_14670 6813efdccf2e17cebc7668daab73f2dc 271 SUPERFAMILY SSF52540 5 249 1.0E-58 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_14670 6813efdccf2e17cebc7668daab73f2dc 271 Gene3D G3DSA:3.40.50.300 3 265 2.2E-73 T 15-10-2018 NJ56_14670 6813efdccf2e17cebc7668daab73f2dc 271 SMART SM00382 39 228 4.0E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_14670 6813efdccf2e17cebc7668daab73f2dc 271 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_12730 9e03f30102f4adb06318114d0df68880 364 Gene3D G3DSA:3.40.50.2300 80 324 1.0E-73 T 15-10-2018 NJ56_12730 9e03f30102f4adb06318114d0df68880 364 Gene3D G3DSA:1.10.260.40 3 62 2.4E-25 T 15-10-2018 NJ56_12730 9e03f30102f4adb06318114d0df68880 364 SMART SM00354 5 75 5.1E-34 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_12730 9e03f30102f4adb06318114d0df68880 364 SUPERFAMILY SSF53822 65 336 2.36E-59 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_12730 9e03f30102f4adb06318114d0df68880 364 Gene3D G3DSA:3.40.50.2300 164 328 1.0E-73 T 15-10-2018 NJ56_12730 9e03f30102f4adb06318114d0df68880 364 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 15-10-2018 NJ56_12730 9e03f30102f4adb06318114d0df68880 364 SUPERFAMILY SSF47413 4 63 2.4E-18 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_12730 9e03f30102f4adb06318114d0df68880 364 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 3.8E-20 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_12730 9e03f30102f4adb06318114d0df68880 364 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 7 17 1.7E-5 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_12730 9e03f30102f4adb06318114d0df68880 364 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 17 27 1.7E-5 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_12730 9e03f30102f4adb06318114d0df68880 364 Pfam PF13377 Periplasmic binding protein-like domain 173 333 2.7E-36 T 15-10-2018 NJ56_09660 83987b6c6a55bc64cd703310bfbfe103 149 SUPERFAMILY SSF52218 1 148 2.0E-40 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_09660 83987b6c6a55bc64cd703310bfbfe103 149 PRINTS PR00369 Flavodoxin signature 84 94 6.0E-7 T 15-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 NJ56_09660 83987b6c6a55bc64cd703310bfbfe103 149 PRINTS PR00369 Flavodoxin signature 108 127 6.0E-7 T 15-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 NJ56_09660 83987b6c6a55bc64cd703310bfbfe103 149 PRINTS PR00369 Flavodoxin signature 53 64 6.0E-7 T 15-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 NJ56_09660 83987b6c6a55bc64cd703310bfbfe103 149 Pfam PF00258 Flavodoxin 6 136 1.9E-21 T 15-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 NJ56_09660 83987b6c6a55bc64cd703310bfbfe103 149 Gene3D G3DSA:3.40.50.360 1 149 1.1E-42 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_06955 d954db0831dd68affa1b12df9ff7eefe 801 Gene3D G3DSA:3.40.50.2000 61 798 0.0 T 15-10-2018 NJ56_06955 d954db0831dd68affa1b12df9ff7eefe 801 Pfam PF00343 Carbohydrate phosphorylase 94 798 0.0 T 15-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_06955 d954db0831dd68affa1b12df9ff7eefe 801 PIRSF PIRSF000460 2 801 3.6E-207 T 15-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_06955 d954db0831dd68affa1b12df9ff7eefe 801 Gene3D G3DSA:3.40.50.2000 457 784 0.0 T 15-10-2018 NJ56_06955 d954db0831dd68affa1b12df9ff7eefe 801 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 798 0.0 T 15-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_06955 d954db0831dd68affa1b12df9ff7eefe 801 SUPERFAMILY SSF53756 6 799 5.89E-294 T 15-10-2018 NJ56_06955 d954db0831dd68affa1b12df9ff7eefe 801 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 643 655 - T 15-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_04040 3ebe246b6af71ae64760e1b0946898c7 248 Gene3D G3DSA:2.60.40.10 45 155 1.9E-9 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_04040 3ebe246b6af71ae64760e1b0946898c7 248 PRINTS PR00969 Pili chaperone signature 87 108 3.8E-5 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_04040 3ebe246b6af71ae64760e1b0946898c7 248 PRINTS PR00969 Pili chaperone signature 172 187 3.8E-5 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_04040 3ebe246b6af71ae64760e1b0946898c7 248 PRINTS PR00969 Pili chaperone signature 116 133 3.8E-5 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_04040 3ebe246b6af71ae64760e1b0946898c7 248 PRINTS PR00969 Pili chaperone signature 137 152 3.8E-5 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_04040 3ebe246b6af71ae64760e1b0946898c7 248 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 42 155 2.2E-17 T 15-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 NJ56_04040 3ebe246b6af71ae64760e1b0946898c7 248 SUPERFAMILY SSF49354 40 155 2.76E-18 T 15-10-2018 IPR008962 PapD-like superfamily NJ56_17970 1edd3599d3406cb19a7e85f5a928c02d 256 Gene3D G3DSA:1.10.443.10 41 238 3.8E-29 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_17970 1edd3599d3406cb19a7e85f5a928c02d 256 PIRSF PIRSF004576 1 254 2.2E-90 T 15-10-2018 IPR016423 Resolvase, Rsv NJ56_17970 1edd3599d3406cb19a7e85f5a928c02d 256 Pfam PF00589 Phage integrase family 47 229 1.4E-31 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_17970 1edd3599d3406cb19a7e85f5a928c02d 256 SUPERFAMILY SSF56349 50 229 2.94E-29 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_06895 20dece1c30449c7e942e9e202d72dc5f 368 SUPERFAMILY SSF51735 1 147 9.76E-54 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_06895 20dece1c30449c7e942e9e202d72dc5f 368 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 15-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_06895 20dece1c30449c7e942e9e202d72dc5f 368 SUPERFAMILY SSF55347 134 354 4.05E-79 T 15-10-2018 NJ56_06895 20dece1c30449c7e942e9e202d72dc5f 368 SMART SM00859 3 122 1.2E-24 T 15-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NJ56_06895 20dece1c30449c7e942e9e202d72dc5f 368 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 34.195 T 15-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_06895 20dece1c30449c7e942e9e202d72dc5f 368 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 2.6E-24 T 15-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NJ56_06895 20dece1c30449c7e942e9e202d72dc5f 368 PIRSF PIRSF000148 1 368 6.3E-69 T 15-10-2018 NJ56_06895 20dece1c30449c7e942e9e202d72dc5f 368 Gene3D G3DSA:3.30.360.10 135 350 3.3E-150 T 15-10-2018 NJ56_06895 20dece1c30449c7e942e9e202d72dc5f 368 Gene3D G3DSA:3.40.50.720 4 356 3.3E-150 T 15-10-2018 NJ56_06895 20dece1c30449c7e942e9e202d72dc5f 368 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 367 1.3E-215 T 15-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 NJ56_06895 20dece1c30449c7e942e9e202d72dc5f 368 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 353 9.6E-58 T 15-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 NJ56_07510 86121058bbc4aa25f0830741929a7ba5 136 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 133 3.4E-55 T 15-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 NJ56_07510 86121058bbc4aa25f0830741929a7ba5 136 Gene3D G3DSA:1.10.1200.120 3 134 7.7E-43 T 15-10-2018 IPR036019 Gated mechanosensitive channel NJ56_07510 86121058bbc4aa25f0830741929a7ba5 136 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 15-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site NJ56_07510 86121058bbc4aa25f0830741929a7ba5 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 4.4E-12 T 15-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 NJ56_07510 86121058bbc4aa25f0830741929a7ba5 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 4.4E-12 T 15-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 NJ56_07510 86121058bbc4aa25f0830741929a7ba5 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 4.4E-12 T 15-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 NJ56_07510 86121058bbc4aa25f0830741929a7ba5 136 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 131 1.0E-45 T 15-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L NJ56_07510 86121058bbc4aa25f0830741929a7ba5 136 SUPERFAMILY SSF81330 12 127 2.09E-35 T 15-10-2018 IPR036019 Gated mechanosensitive channel NJ56_07510 86121058bbc4aa25f0830741929a7ba5 136 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 132 24.248 T 15-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 NJ56_18170 fe2680d1920a7e1249044e41a7d5be11 206 TIGRFAM TIGR02747 TraV: type IV conjugative transfer system protein TraV 17 199 1.0E-21 T 15-10-2018 IPR014118 Type IV conjugative transfer system protein TraV NJ56_18170 fe2680d1920a7e1249044e41a7d5be11 206 Pfam PF09676 Type IV conjugative transfer system lipoprotein (TraV) 39 199 4.1E-23 T 15-10-2018 IPR014118 Type IV conjugative transfer system protein TraV NJ56_13465 1cad488638660497a0c4344ac7fcc1e6 451 Pfam PF07693 KAP family P-loop domain 33 284 2.1E-34 T 15-10-2018 IPR011646 KAP family P-loop domain NJ56_13465 1cad488638660497a0c4344ac7fcc1e6 451 SUPERFAMILY SSF52540 18 251 2.04E-11 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00480 1f3998a1bbac6622feac96c951624be9 255 PRINTS PR00412 Epoxide hydrolase signature 229 251 6.2E-5 T 15-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 NJ56_00480 1f3998a1bbac6622feac96c951624be9 255 PRINTS PR00412 Epoxide hydrolase signature 42 57 6.2E-5 T 15-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 NJ56_00480 1f3998a1bbac6622feac96c951624be9 255 SUPERFAMILY SSF53474 6 253 2.04E-54 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_00480 1f3998a1bbac6622feac96c951624be9 255 Pfam PF12697 Alpha/beta hydrolase family 19 246 5.4E-24 T 15-10-2018 IPR000073 Alpha/beta hydrolase fold-1 NJ56_00480 1f3998a1bbac6622feac96c951624be9 255 Gene3D G3DSA:3.40.50.1820 1 253 3.1E-75 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_00480 1f3998a1bbac6622feac96c951624be9 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 42 57 1.6E-6 T 15-10-2018 IPR000073 Alpha/beta hydrolase fold-1 NJ56_00480 1f3998a1bbac6622feac96c951624be9 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 85 98 1.6E-6 T 15-10-2018 IPR000073 Alpha/beta hydrolase fold-1 NJ56_00480 1f3998a1bbac6622feac96c951624be9 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 99 112 1.6E-6 T 15-10-2018 IPR000073 Alpha/beta hydrolase fold-1 NJ56_13810 e3be4c8b4c76940a2a68de783d50f3ae 79 Pfam PF10964 Protein of unknown function (DUF2766) 2 78 3.9E-47 T 15-10-2018 IPR020262 Uncharacterised protein family YecJ NJ56_13810 e3be4c8b4c76940a2a68de783d50f3ae 79 ProDom PD060536 YECJ YPO1738 1 78 2.0E-36 T 15-10-2018 IPR020262 Uncharacterised protein family YecJ NJ56_00860 a892ec269a662d3ebeb1894c948b99a8 206 Pfam PF14518 Iron-containing redox enzyme 27 194 7.5E-26 T 15-10-2018 NJ56_00860 a892ec269a662d3ebeb1894c948b99a8 206 SMART SM01236 61 158 1.1E-10 T 15-10-2018 NJ56_00860 a892ec269a662d3ebeb1894c948b99a8 206 SUPERFAMILY SSF48613 3 201 2.23E-56 T 15-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 NJ56_00860 a892ec269a662d3ebeb1894c948b99a8 206 Gene3D G3DSA:1.20.910.10 2 205 2.0E-54 T 15-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 NJ56_00790 557783b2f4994b9260cf4aa341fd5c48 516 Pfam PF11329 Protein of unknown function (DUF3131) 46 423 1.3E-140 T 15-10-2018 IPR021478 Protein of unknown function DUF3131 NJ56_00790 557783b2f4994b9260cf4aa341fd5c48 516 Gene3D G3DSA:1.50.10.140 38 169 8.9E-8 T 15-10-2018 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 Gene3D G3DSA:3.30.499.20 4 286 3.2E-99 T 15-10-2018 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 PRINTS PR00415 Aconitase family signature 286 300 1.4E-49 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 PRINTS PR00415 Aconitase family signature 108 116 1.4E-49 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 PRINTS PR00415 Aconitase family signature 119 132 1.4E-49 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 PRINTS PR00415 Aconitase family signature 133 148 1.4E-49 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 PRINTS PR00415 Aconitase family signature 343 354 1.4E-49 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 PRINTS PR00415 Aconitase family signature 195 208 1.4E-49 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 PRINTS PR00415 Aconitase family signature 209 222 1.4E-49 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 PRINTS PR00415 Aconitase family signature 399 412 1.4E-49 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 PRINTS PR00415 Aconitase family signature 82 95 1.4E-49 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 466 61.677 T 15-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 465 2.6E-265 T 15-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 SUPERFAMILY SSF53732 2 465 2.22E-168 T 15-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 15-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 Gene3D G3DSA:3.30.499.10 324 469 5.5E-51 T 15-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 ProSitePatterns PS01244 Aconitase family signature 2. 399 412 - T 15-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 NJ56_02815 6363cf9c9beb5713d078de01f99edd9a 470 Pfam PF00330 Aconitase family (aconitate hydratase) 8 457 1.6E-161 T 15-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 NJ56_09265 544861a8816798098520603978030940 392 Gene3D G3DSA:3.50.50.60 3 336 1.8E-96 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_09265 544861a8816798098520603978030940 392 SUPERFAMILY SSF51905 2 382 1.09E-55 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_09265 544861a8816798098520603978030940 392 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 3 388 8.8E-131 T 15-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 NJ56_09265 544861a8816798098520603978030940 392 Gene3D G3DSA:3.30.9.50 78 267 1.8E-96 T 15-10-2018 NJ56_09265 544861a8816798098520603978030940 392 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3 388 1.3E-146 T 15-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 NJ56_09265 544861a8816798098520603978030940 392 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 292 305 - T 15-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 NJ56_09265 544861a8816798098520603978030940 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 2.6E-14 T 15-10-2018 NJ56_09265 544861a8816798098520603978030940 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 2.6E-14 T 15-10-2018 NJ56_09265 544861a8816798098520603978030940 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 2.6E-14 T 15-10-2018 NJ56_09265 544861a8816798098520603978030940 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 2.6E-14 T 15-10-2018 NJ56_09265 544861a8816798098520603978030940 392 Pfam PF01494 FAD binding domain 2 343 5.3E-23 T 15-10-2018 IPR002938 FAD-binding domain GO:0071949 NJ56_12365 3972982943068c657b24991ef3feb305 494 PIRSF PIRSF006060 5 488 1.1E-82 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_12365 3972982943068c657b24991ef3feb305 494 Pfam PF00324 Amino acid permease 25 479 1.7E-143 T 15-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 NJ56_12365 3972982943068c657b24991ef3feb305 494 Gene3D G3DSA:1.20.1740.10 16 484 7.3E-64 T 15-10-2018 NJ56_12365 3972982943068c657b24991ef3feb305 494 ProSitePatterns PS00218 Amino acid permeases signature. 50 81 - T 15-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 NJ56_01770 ea461dda246c21037f56284b507e9153 193 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 38.618 T 15-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 NJ56_01770 ea461dda246c21037f56284b507e9153 193 Gene3D G3DSA:3.40.50.10490 1 192 4.3E-72 T 15-10-2018 NJ56_01770 ea461dda246c21037f56284b507e9153 193 Pfam PF13580 SIS domain 24 146 6.1E-32 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_01770 ea461dda246c21037f56284b507e9153 193 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 2.5E-84 T 15-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 NJ56_01770 ea461dda246c21037f56284b507e9153 193 SUPERFAMILY SSF53697 1 189 6.27E-52 T 15-10-2018 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 SUPERFAMILY SSF51182 1 374 6.56E-98 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 PRINTS PR00714 Phosphomannose isomerase type I signature 4 22 5.1E-71 T 15-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 PRINTS PR00714 Phosphomannose isomerase type I signature 220 235 5.1E-71 T 15-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 PRINTS PR00714 Phosphomannose isomerase type I signature 32 47 5.1E-71 T 15-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 PRINTS PR00714 Phosphomannose isomerase type I signature 81 102 5.1E-71 T 15-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 PRINTS PR00714 Phosphomannose isomerase type I signature 255 274 5.1E-71 T 15-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 PRINTS PR00714 Phosphomannose isomerase type I signature 126 149 5.1E-71 T 15-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 PRINTS PR00714 Phosphomannose isomerase type I signature 274 293 5.1E-71 T 15-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 PRINTS PR00714 Phosphomannose isomerase type I signature 236 255 5.1E-71 T 15-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 255 280 - T 15-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 Gene3D G3DSA:1.10.441.10 150 300 1.4E-141 T 15-10-2018 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 Pfam PF01238 Phosphomannose isomerase type I 1 355 1.1E-97 T 15-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 126 134 - T 15-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 PIRSF PIRSF001480 1 391 1.5E-105 T 15-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 Gene3D G3DSA:2.60.120.10 6 275 1.4E-141 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 Gene3D G3DSA:2.60.120.10 301 382 1.4E-141 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_15095 15d9f6b73ccbe91f7b047cf42a52e092 391 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 3 385 2.9E-114 T 15-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 NJ56_15135 dce70fdbb3f1225159a40ccba0150301 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 1.1E-60 T 15-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 NJ56_15135 dce70fdbb3f1225159a40ccba0150301 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 6.2E-91 T 15-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 NJ56_15135 dce70fdbb3f1225159a40ccba0150301 193 PIRSF PIRSF006102 1 193 1.6E-62 T 15-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 NJ56_15135 dce70fdbb3f1225159a40ccba0150301 193 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 26.514 T 15-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 NJ56_08940 edc50a18cb0f2d6ec67424b4e04430e5 346 Gene3D G3DSA:3.40.50.1980 53 170 6.2E-30 T 15-10-2018 NJ56_08940 edc50a18cb0f2d6ec67424b4e04430e5 346 Gene3D G3DSA:3.40.50.1980 171 346 1.3E-62 T 15-10-2018 NJ56_08940 edc50a18cb0f2d6ec67424b4e04430e5 346 Pfam PF01497 Periplasmic binding protein 74 322 1.7E-22 T 15-10-2018 IPR002491 ABC transporter periplasmic binding domain NJ56_08940 edc50a18cb0f2d6ec67424b4e04430e5 346 SUPERFAMILY SSF53807 56 342 3.41E-43 T 15-10-2018 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 SUPERFAMILY SSF82714 182 272 1.44E-22 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1039 0.0 T 15-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 SUPERFAMILY SSF82866 807 1031 6.8E-46 T 15-10-2018 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 Gene3D G3DSA:3.30.70.1430 38 820 0.0 T 15-10-2018 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 Gene3D G3DSA:3.30.70.1440 675 864 0.0 T 15-10-2018 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 Gene3D G3DSA:3.30.70.1320 133 330 0.0 T 15-10-2018 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 Gene3D G3DSA:3.30.2090.10 724 812 0.0 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 SUPERFAMILY SSF82693 39 131 3.4E-27 T 15-10-2018 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 SUPERFAMILY SSF82693 136 330 6.02E-26 T 15-10-2018 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 SUPERFAMILY SSF82714 723 810 1.19E-23 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 SUPERFAMILY SSF82693 566 672 3.71E-27 T 15-10-2018 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 SUPERFAMILY SSF82866 296 497 1.7E-48 T 15-10-2018 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 Gene3D G3DSA:3.30.70.1430 570 674 0.0 T 15-10-2018 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 1.7E-108 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 1.7E-108 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 1.7E-108 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 1.7E-108 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.7E-108 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 1.7E-108 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 1.7E-108 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 1.7E-108 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.7E-108 T 15-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 15-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 Gene3D G3DSA:1.20.1640.10 516 1024 0.0 T 15-10-2018 NJ56_10950 3d1846fb4c79bcaa8f2f2cdef4d84d40 1046 Gene3D G3DSA:1.20.1640.10 8 515 0.0 T 15-10-2018 NJ56_01785 4e21681c956169d10a6bc27746a429ed 254 Gene3D G3DSA:3.20.20.140 209 253 3.4E-7 T 15-10-2018 NJ56_01785 4e21681c956169d10a6bc27746a429ed 254 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 7 242 1.2E-91 T 15-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_01785 4e21681c956169d10a6bc27746a429ed 254 SUPERFAMILY SSF53098 4 185 5.06E-53 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_01785 4e21681c956169d10a6bc27746a429ed 254 SMART SM00479 7 184 9.5E-50 T 15-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III NJ56_01785 4e21681c956169d10a6bc27746a429ed 254 Pfam PF00929 Exonuclease 9 175 3.7E-38 T 15-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III NJ56_01785 4e21681c956169d10a6bc27746a429ed 254 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 225 3.0E-87 T 15-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_01785 4e21681c956169d10a6bc27746a429ed 254 Gene3D G3DSA:3.30.420.10 4 190 3.2E-58 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_16695 8f390006faac8ba7a9e8947d20c2d31b 105 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 5 94 1.0E-18 T 15-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 NJ56_16695 8f390006faac8ba7a9e8947d20c2d31b 105 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 4 102 1.8E-32 T 15-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 NJ56_16695 8f390006faac8ba7a9e8947d20c2d31b 105 Hamap MF_01194 Heat shock protein HspQ [hspQ]. 1 105 36.861 T 15-10-2018 IPR022866 Heat shock protein HspQ NJ56_16695 8f390006faac8ba7a9e8947d20c2d31b 105 SMART SM00992 3 102 3.3E-34 T 15-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 NJ56_16695 8f390006faac8ba7a9e8947d20c2d31b 105 SUPERFAMILY SSF141255 4 96 2.22E-29 T 15-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 NJ56_16695 8f390006faac8ba7a9e8947d20c2d31b 105 Gene3D G3DSA:2.30.30.390 1 105 7.1E-39 T 15-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 NJ56_02130 f3d9a3c8e7205a950b6870f922e5cd6f 365 Gene3D G3DSA:1.20.1710.10 60 365 1.8E-55 T 15-10-2018 IPR036708 BipD-like superfamily NJ56_02130 f3d9a3c8e7205a950b6870f922e5cd6f 365 SUPERFAMILY SSF140693 77 356 3.66E-39 T 15-10-2018 IPR036708 BipD-like superfamily NJ56_02130 f3d9a3c8e7205a950b6870f922e5cd6f 365 Pfam PF06511 Invasion plasmid antigen IpaD 111 353 1.4E-12 T 15-10-2018 IPR009483 Invasion plasmid antigen IpaD GO:0009405 NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 SUPERFAMILY SSF51120 257 474 3.14E-44 T 15-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 Pfam PF13583 Metallo-peptidase family M12B Reprolysin-like 105 229 7.4E-6 T 15-10-2018 NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 PIRSF PIRSF001205 1 477 1.3E-233 T 15-10-2018 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 Gene3D G3DSA:3.40.390.10 33 260 7.4E-190 T 15-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 SUPERFAMILY SSF55486 20 254 8.52E-80 T 15-10-2018 NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 PRINTS PR00313 NodO calcium binding signature 368 376 3.6E-10 T 15-10-2018 NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 PRINTS PR00313 NodO calcium binding signature 377 386 3.6E-10 T 15-10-2018 NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 PRINTS PR00313 NodO calcium binding signature 359 367 3.6E-10 T 15-10-2018 NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 PRINTS PR00313 NodO calcium binding signature 338 349 3.6E-10 T 15-10-2018 NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 364 382 - T 15-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 Gene3D G3DSA:2.150.10.10 261 468 7.4E-190 T 15-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 Pfam PF08548 Peptidase M10 serralysin C terminal 256 477 1.0E-86 T 15-10-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 NJ56_16310 a9bbae459ba1390d704d81c1de9e00dd 477 SMART SM00235 71 240 3.4E-28 T 15-10-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 NJ56_06595 7c106c69eced63c28012b5e01d33dd10 408 SUPERFAMILY SSF103473 7 400 1.28E-50 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_06595 7c106c69eced63c28012b5e01d33dd10 408 Pfam PF07690 Major Facilitator Superfamily 25 364 2.0E-32 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_06595 7c106c69eced63c28012b5e01d33dd10 408 Gene3D G3DSA:1.20.1720.10 19 398 2.1E-64 T 15-10-2018 NJ56_16230 6c92d8a489858858de0959916d6d2136 410 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 15 408 70.151 T 15-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 NJ56_16230 6c92d8a489858858de0959916d6d2136 410 PIRSF PIRSF000521 27 164 9.5E-9 T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_16230 6c92d8a489858858de0959916d6d2136 410 PIRSF PIRSF000521 178 408 2.2E-37 T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_16230 6c92d8a489858858de0959916d6d2136 410 Pfam PF00202 Aminotransferase class-III 25 403 1.5E-121 T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_16230 6c92d8a489858858de0959916d6d2136 410 Gene3D G3DSA:3.40.640.10 59 310 1.1E-149 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_16230 6c92d8a489858858de0959916d6d2136 410 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 15 403 7.3E-153 T 15-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 NJ56_16230 6c92d8a489858858de0959916d6d2136 410 SUPERFAMILY SSF53383 17 406 1.17E-122 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_16230 6c92d8a489858858de0959916d6d2136 410 Gene3D G3DSA:3.90.1150.10 24 398 1.1E-149 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_16230 6c92d8a489858858de0959916d6d2136 410 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 409 3.0E-220 T 15-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 NJ56_16230 6c92d8a489858858de0959916d6d2136 410 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 228 265 - T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_09275 cc102173affad0409fd7c945184ea8b7 365 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 263 353 1.1E-17 T 15-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 NJ56_09275 cc102173affad0409fd7c945184ea8b7 365 Gene3D G3DSA:4.10.1250.10 232 276 2.6E-26 T 15-10-2018 NJ56_09275 cc102173affad0409fd7c945184ea8b7 365 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 358 2.5E-152 T 15-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 NJ56_09275 cc102173affad0409fd7c945184ea8b7 365 Gene3D G3DSA:3.30.1360.120 6 231 1.5E-87 T 15-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 NJ56_09275 cc102173affad0409fd7c945184ea8b7 365 Gene3D G3DSA:2.40.30.110 277 365 2.1E-33 T 15-10-2018 NJ56_09275 cc102173affad0409fd7c945184ea8b7 365 SUPERFAMILY SSF101790 270 360 1.96E-24 T 15-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal NJ56_09275 cc102173affad0409fd7c945184ea8b7 365 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 254 5.5E-82 T 15-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain NJ56_09275 cc102173affad0409fd7c945184ea8b7 365 PIRSF PIRSF006487 1 364 2.7E-79 T 15-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 NJ56_09275 cc102173affad0409fd7c945184ea8b7 365 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 43.824 T 15-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 NJ56_09275 cc102173affad0409fd7c945184ea8b7 365 SUPERFAMILY SSF103025 3 277 8.95E-92 T 15-10-2018 NJ56_09275 cc102173affad0409fd7c945184ea8b7 365 Gene3D G3DSA:3.30.70.1400 51 138 1.5E-87 T 15-10-2018 NJ56_04200 a3370c068177de32adb07ea3dcb6e6ae 104 SUPERFAMILY SSF103481 6 103 2.22E-19 T 15-10-2018 NJ56_04200 a3370c068177de32adb07ea3dcb6e6ae 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 1.1E-30 T 15-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 NJ56_04200 a3370c068177de32adb07ea3dcb6e6ae 104 Gene3D G3DSA:1.10.3730.20 1 104 4.0E-31 T 15-10-2018 NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 Pfam PF00263 Bacterial type II and III secretion system protein 443 608 3.0E-48 T 15-10-2018 IPR004846 Type II/III secretion system GO:0009306 NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 Pfam PF03958 Bacterial type II/III secretion system short domain 294 371 1.1E-14 T 15-10-2018 IPR005644 NolW-like NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 Pfam PF03958 Bacterial type II/III secretion system short domain 220 288 1.1E-13 T 15-10-2018 IPR005644 NolW-like NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 Pfam PF03958 Bacterial type II/III secretion system short domain 155 215 1.4E-11 T 15-10-2018 IPR005644 NolW-like NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 58 613 3.5E-154 T 15-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 Gene3D G3DSA:3.30.1370.120 287 372 1.4E-17 T 15-10-2018 IPR038591 NolW-like superfamily NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 PRINTS PR00811 Bacterial general secretion pathway protein D signature 595 609 1.6E-36 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 PRINTS PR00811 Bacterial general secretion pathway protein D signature 371 381 1.6E-36 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 PRINTS PR00811 Bacterial general secretion pathway protein D signature 572 590 1.6E-36 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 PRINTS PR00811 Bacterial general secretion pathway protein D signature 474 484 1.6E-36 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 PRINTS PR00811 Bacterial general secretion pathway protein D signature 439 463 1.6E-36 T 15-10-2018 IPR001775 GspD/PilQ family NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 Gene3D G3DSA:3.30.1370.120 218 286 4.4E-19 T 15-10-2018 IPR038591 NolW-like superfamily NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 553 586 - T 15-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 NJ56_09380 ad0216ebbc43a5b440d337d708597017 674 Gene3D G3DSA:3.30.1370.120 48 214 4.1E-50 T 15-10-2018 IPR038591 NolW-like superfamily NJ56_03950 065d1be7110e254a4942368615f405aa 68 Gene3D G3DSA:3.30.1910.10 1 64 4.2E-26 T 15-10-2018 NJ56_03950 065d1be7110e254a4942368615f405aa 68 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 1.1E-28 T 15-10-2018 IPR009491 Protein of unknown function DUF1107 NJ56_03950 065d1be7110e254a4942368615f405aa 68 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 65 2.0E-28 T 15-10-2018 IPR009491 Protein of unknown function DUF1107 NJ56_16240 b1ce2b94e5ebcd95588f6613a2617d48 477 PIRSF PIRSF006446 2 462 5.5E-228 T 15-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 NJ56_16240 b1ce2b94e5ebcd95588f6613a2617d48 477 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 437 3.5E-169 T 15-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 NJ56_14780 55bc5a48bdefdd7d9096d14e107e3a11 327 SUPERFAMILY SSF143865 13 259 1.2E-50 T 15-10-2018 NJ56_14780 55bc5a48bdefdd7d9096d14e107e3a11 327 Gene3D G3DSA:1.20.58.340 140 262 4.5E-42 T 15-10-2018 NJ56_14780 55bc5a48bdefdd7d9096d14e107e3a11 327 Gene3D G3DSA:1.20.58.340 270 327 4.3E-11 T 15-10-2018 NJ56_14780 55bc5a48bdefdd7d9096d14e107e3a11 327 Pfam PF01544 CorA-like Mg2+ transporter protein 38 323 3.7E-62 T 15-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 NJ56_14780 55bc5a48bdefdd7d9096d14e107e3a11 327 Gene3D G3DSA:3.30.460.20 1 139 1.3E-41 T 15-10-2018 NJ56_14780 55bc5a48bdefdd7d9096d14e107e3a11 327 SUPERFAMILY SSF144083 263 324 2.35E-13 T 15-10-2018 NJ56_06005 beb3fb63b5bff2b2bca11a3847fd3495 230 SUPERFAMILY SSF75217 4 184 7.19E-50 T 15-10-2018 IPR029028 Alpha/beta knot methyltransferases NJ56_06005 beb3fb63b5bff2b2bca11a3847fd3495 230 Gene3D G3DSA:3.40.1280.10 2 190 3.6E-61 T 15-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NJ56_06005 beb3fb63b5bff2b2bca11a3847fd3495 230 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 2 197 35.872 T 15-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 NJ56_06005 beb3fb63b5bff2b2bca11a3847fd3495 230 Pfam PF12105 SpoU, rRNA methylase, C-terminal 163 218 3.0E-23 T 15-10-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 NJ56_06005 beb3fb63b5bff2b2bca11a3847fd3495 230 Pfam PF00588 SpoU rRNA Methylase family 20 159 1.1E-35 T 15-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 Gene3D G3DSA:2.60.40.10 20 137 1.4E-41 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 21 137 2.0E-41 T 15-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 158 214 3.4E-10 T 15-10-2018 IPR016148 Pili assembly chaperone, C-terminal NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 Gene3D G3DSA:2.60.40.10 138 219 2.3E-21 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 SUPERFAMILY SSF49584 137 217 4.84E-20 T 15-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 PRINTS PR00969 Pili chaperone signature 21 30 1.1E-36 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 PRINTS PR00969 Pili chaperone signature 118 133 1.1E-36 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 PRINTS PR00969 Pili chaperone signature 153 168 1.1E-36 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 PRINTS PR00969 Pili chaperone signature 94 111 1.1E-36 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 PRINTS PR00969 Pili chaperone signature 66 87 1.1E-36 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 93 110 - T 15-10-2018 IPR018046 Pili assembly chaperone, conserved site NJ56_06345 c7f8509a95e27591426dcce9e08d9d98 222 SUPERFAMILY SSF49354 16 136 3.14E-41 T 15-10-2018 IPR008962 PapD-like superfamily NJ56_05340 d408d035f6a9855e85bd8567a55d2c7d 246 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 65 231 1.7E-52 T 15-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 NJ56_05340 d408d035f6a9855e85bd8567a55d2c7d 246 Hamap MF_01001 UDP-N-acetyl-D-mannosaminuronic acid transferase [wecG]. 1 246 58.969 T 15-10-2018 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase GO:0009246|GO:0016758 NJ56_05340 d408d035f6a9855e85bd8567a55d2c7d 246 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 62 237 9.2E-73 T 15-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 NJ56_07990 a1858a30edca1a00c5587f6f840feabd 326 SUPERFAMILY SSF51735 115 287 3.6E-38 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_07990 a1858a30edca1a00c5587f6f840feabd 326 SMART SM00829 12 322 0.0029 T 15-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 NJ56_07990 a1858a30edca1a00c5587f6f840feabd 326 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 2 324 5.8E-137 T 15-10-2018 IPR014188 Acrylyl-CoA reductase AcuI NJ56_07990 a1858a30edca1a00c5587f6f840feabd 326 SUPERFAMILY SSF50129 1 144 1.89E-44 T 15-10-2018 IPR011032 GroES-like superfamily NJ56_07990 a1858a30edca1a00c5587f6f840feabd 326 Gene3D G3DSA:3.90.180.10 16 323 8.4E-125 T 15-10-2018 NJ56_07990 a1858a30edca1a00c5587f6f840feabd 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 85 1.9E-4 T 15-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 NJ56_07990 a1858a30edca1a00c5587f6f840feabd 326 Pfam PF00107 Zinc-binding dehydrogenase 158 270 1.4E-15 T 15-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 NJ56_07990 a1858a30edca1a00c5587f6f840feabd 326 Gene3D G3DSA:3.40.50.720 125 292 8.4E-125 T 15-10-2018 NJ56_05690 396b4feb7eaba7df0e05a8b98b7d9a8e 732 SMART SM00487 195 395 2.0E-16 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_05690 396b4feb7eaba7df0e05a8b98b7d9a8e 732 Pfam PF00270 DEAD/DEAH box helicase 203 364 6.7E-15 T 15-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NJ56_05690 396b4feb7eaba7df0e05a8b98b7d9a8e 732 TIGRFAM TIGR00595 priA: primosomal protein N' 221 730 6.1E-205 T 15-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 NJ56_05690 396b4feb7eaba7df0e05a8b98b7d9a8e 732 Gene3D G3DSA:1.10.8.630 2 113 1.5E-35 T 15-10-2018 NJ56_05690 396b4feb7eaba7df0e05a8b98b7d9a8e 732 SUPERFAMILY SSF52540 220 601 2.48E-40 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05690 396b4feb7eaba7df0e05a8b98b7d9a8e 732 Gene3D G3DSA:3.40.50.300 184 379 6.3E-82 T 15-10-2018 NJ56_05690 396b4feb7eaba7df0e05a8b98b7d9a8e 732 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 732 25.453 T 15-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 NJ56_05690 396b4feb7eaba7df0e05a8b98b7d9a8e 732 SMART SM00490 492 589 9.2E-9 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_05690 396b4feb7eaba7df0e05a8b98b7d9a8e 732 Pfam PF00271 Helicase conserved C-terminal domain 520 589 7.8E-6 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_17530 f4e44b8f85aff22c8eae1a4782f1f7b2 312 Gene3D G3DSA:3.40.50.300 1 249 1.2E-76 T 15-10-2018 NJ56_17530 f4e44b8f85aff22c8eae1a4782f1f7b2 312 Pfam PF00005 ABC transporter 17 163 5.1E-33 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_17530 f4e44b8f85aff22c8eae1a4782f1f7b2 312 SUPERFAMILY SSF52540 1 240 6.5E-76 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17530 f4e44b8f85aff22c8eae1a4782f1f7b2 312 SMART SM00382 26 213 2.7E-15 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17530 f4e44b8f85aff22c8eae1a4782f1f7b2 312 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_03680 87c26f7b0ddd5854b441a5761dc0022e 192 Gene3D G3DSA:3.30.63.10 34 89 1.4E-14 T 15-10-2018 NJ56_03680 87c26f7b0ddd5854b441a5761dc0022e 192 Gene3D G3DSA:3.40.50.300 7 154 1.4E-14 T 15-10-2018 NJ56_03680 87c26f7b0ddd5854b441a5761dc0022e 192 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 3 179 6.4E-64 T 15-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 NJ56_03680 87c26f7b0ddd5854b441a5761dc0022e 192 Pfam PF13238 AAA domain 5 138 7.2E-8 T 15-10-2018 NJ56_03680 87c26f7b0ddd5854b441a5761dc0022e 192 SUPERFAMILY SSF52540 1 181 6.36E-34 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03680 87c26f7b0ddd5854b441a5761dc0022e 192 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 1 178 33.287 T 15-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 NJ56_03680 87c26f7b0ddd5854b441a5761dc0022e 192 SMART SM00072 1 181 3.4E-9 T 15-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit NJ56_06760 0e5a943e102201b722dda6bd8afe06bd 317 Pfam PF00294 pfkB family carbohydrate kinase 4 311 9.6E-68 T 15-10-2018 IPR011611 Carbohydrate kinase PfkB NJ56_06760 0e5a943e102201b722dda6bd8afe06bd 317 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 265 278 - T 15-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 NJ56_06760 0e5a943e102201b722dda6bd8afe06bd 317 Gene3D G3DSA:3.40.1190.20 1 314 7.7E-85 T 15-10-2018 IPR029056 Ribokinase-like NJ56_06760 0e5a943e102201b722dda6bd8afe06bd 317 SUPERFAMILY SSF53613 1 310 2.62E-70 T 15-10-2018 IPR029056 Ribokinase-like NJ56_17105 a783b94e7e3309af67af1f2dece974e8 238 Gene3D G3DSA:1.10.3720.10 2 233 5.3E-47 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17105 a783b94e7e3309af67af1f2dece974e8 238 SUPERFAMILY SSF161098 7 216 2.22E-36 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17105 a783b94e7e3309af67af1f2dece974e8 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 230 3.3E-14 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_17105 a783b94e7e3309af67af1f2dece974e8 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 4 78 6.4E-13 T 15-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 NJ56_06885 afe618a17188f5e2f7f9b6087bc21366 170 Gene3D G3DSA:3.40.50.300 2 170 9.9E-68 T 15-10-2018 NJ56_06885 afe618a17188f5e2f7f9b6087bc21366 170 PRINTS PR01100 Shikimate kinase family signature 6 21 8.9E-6 T 15-10-2018 NJ56_06885 afe618a17188f5e2f7f9b6087bc21366 170 PRINTS PR01100 Shikimate kinase family signature 100 117 8.9E-6 T 15-10-2018 NJ56_06885 afe618a17188f5e2f7f9b6087bc21366 170 SUPERFAMILY SSF52540 3 167 4.09E-30 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06885 afe618a17188f5e2f7f9b6087bc21366 170 Pfam PF01202 Shikimate kinase 12 166 3.4E-15 T 15-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 NJ56_06885 afe618a17188f5e2f7f9b6087bc21366 170 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 165 1.1E-67 T 15-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 NJ56_04125 8ed4e39c5184b2a84cbdadd213697f86 504 SUPERFAMILY SSF64153 16 255 7.98E-63 T 15-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 NJ56_04125 8ed4e39c5184b2a84cbdadd213697f86 504 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 19 219 2.9E-49 T 15-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 NJ56_04125 8ed4e39c5184b2a84cbdadd213697f86 504 Pfam PF01256 Carbohydrate kinase 258 495 7.3E-70 T 15-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 NJ56_04125 8ed4e39c5184b2a84cbdadd213697f86 504 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 234 503 23.126 T 15-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 NJ56_04125 8ed4e39c5184b2a84cbdadd213697f86 504 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 233 499 1.5E-79 T 15-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 NJ56_04125 8ed4e39c5184b2a84cbdadd213697f86 504 Gene3D G3DSA:3.40.1190.20 226 499 8.9E-85 T 15-10-2018 IPR029056 Ribokinase-like NJ56_04125 8ed4e39c5184b2a84cbdadd213697f86 504 SUPERFAMILY SSF53613 232 499 6.33E-75 T 15-10-2018 IPR029056 Ribokinase-like NJ56_04125 8ed4e39c5184b2a84cbdadd213697f86 504 Pfam PF03853 YjeF-related protein N-terminus 40 199 1.2E-42 T 15-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 NJ56_04125 8ed4e39c5184b2a84cbdadd213697f86 504 Gene3D G3DSA:3.40.50.10260 15 224 1.5E-55 T 15-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 NJ56_04125 8ed4e39c5184b2a84cbdadd213697f86 504 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 19 220 21.998 T 15-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 NJ56_04125 8ed4e39c5184b2a84cbdadd213697f86 504 PIRSF PIRSF017184 15 504 3.5E-146 T 15-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 NJ56_17445 85d7324a01f8b6b4bc1a22d98c51f2d2 340 Gene3D G3DSA:3.10.580.10 20 148 9.9E-20 T 15-10-2018 NJ56_17445 85d7324a01f8b6b4bc1a22d98c51f2d2 340 Pfam PF01769 Divalent cation transporter 210 331 7.3E-26 T 15-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 NJ56_17445 85d7324a01f8b6b4bc1a22d98c51f2d2 340 Pfam PF00571 CBS domain 24 83 0.0057 T 15-10-2018 IPR000644 CBS domain NJ56_17445 85d7324a01f8b6b4bc1a22d98c51f2d2 340 Gene3D G3DSA:1.10.357.20 162 339 3.0E-52 T 15-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain NJ56_17445 85d7324a01f8b6b4bc1a22d98c51f2d2 340 SUPERFAMILY SSF54631 23 163 5.18E-19 T 15-10-2018 NJ56_17445 85d7324a01f8b6b4bc1a22d98c51f2d2 340 SUPERFAMILY SSF161093 167 338 6.8E-48 T 15-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 NJ56_04420 528133ab896bdca5474c957ae2bbec40 124 Gene3D G3DSA:1.20.120.1170 19 93 3.1E-22 T 15-10-2018 IPR038307 StbB superfamily NJ56_04420 528133ab896bdca5474c957ae2bbec40 124 Pfam PF10784 Plasmid stability protein 6 77 3.7E-22 T 15-10-2018 IPR019720 Plasmid stability protein, StbB NJ56_05350 7613a694eeeba7b45544bdd035bfab25 361 Hamap MF_01002 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [wecF]. 1 361 67.684 T 15-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 NJ56_05350 7613a694eeeba7b45544bdd035bfab25 361 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 1 356 7.9E-181 T 15-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 NJ56_12220 f9362afd9debd0e5befa6f3c9e12691b 397 Gene3D G3DSA:1.20.1720.10 11 389 2.1E-102 T 15-10-2018 NJ56_12220 f9362afd9debd0e5befa6f3c9e12691b 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 10 390 9.2E-136 T 15-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 NJ56_12220 f9362afd9debd0e5befa6f3c9e12691b 397 SUPERFAMILY SSF103473 7 394 2.62E-68 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_12220 f9362afd9debd0e5befa6f3c9e12691b 397 Pfam PF07690 Major Facilitator Superfamily 16 358 1.2E-47 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_02255 d1d9977f0f09bc975b2b40909880bbd6 149 Gene3D G3DSA:1.10.10.10 10 105 1.5E-10 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_02255 d1d9977f0f09bc975b2b40909880bbd6 149 SUPERFAMILY SSF46894 10 99 7.09E-9 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_02255 d1d9977f0f09bc975b2b40909880bbd6 149 Pfam PF00486 Transcriptional regulatory protein, C terminal 27 97 1.5E-4 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_07555 9bfc96a2d4bd3bf99b976284b66328e6 273 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 268 31.871 T 15-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 NJ56_07555 9bfc96a2d4bd3bf99b976284b66328e6 273 SUPERFAMILY SSF53223 5 102 4.09E-30 T 15-10-2018 NJ56_07555 9bfc96a2d4bd3bf99b976284b66328e6 273 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 5 271 2.3E-95 T 15-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 NJ56_07555 9bfc96a2d4bd3bf99b976284b66328e6 273 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 7.6E-24 T 15-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 NJ56_07555 9bfc96a2d4bd3bf99b976284b66328e6 273 Gene3D G3DSA:3.40.50.10860 6 255 1.4E-83 T 15-10-2018 NJ56_07555 9bfc96a2d4bd3bf99b976284b66328e6 273 Gene3D G3DSA:3.40.50.720 103 245 1.4E-83 T 15-10-2018 NJ56_07555 9bfc96a2d4bd3bf99b976284b66328e6 273 SUPERFAMILY SSF51735 103 264 3.9E-43 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_07555 9bfc96a2d4bd3bf99b976284b66328e6 273 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 120 191 2.7E-10 T 15-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase NJ56_16800 78c0e788289011d18b6c6a1af427f030 336 Gene3D G3DSA:3.20.20.70 1 336 4.3E-146 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_16800 78c0e788289011d18b6c6a1af427f030 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 15-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 NJ56_16800 78c0e788289011d18b6c6a1af427f030 336 PIRSF PIRSF000164 12 336 1.2E-94 T 15-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 NJ56_16800 78c0e788289011d18b6c6a1af427f030 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 15-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 NJ56_16800 78c0e788289011d18b6c6a1af427f030 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 51.328 T 15-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 NJ56_16800 78c0e788289011d18b6c6a1af427f030 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 1.7E-91 T 15-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 NJ56_16800 78c0e788289011d18b6c6a1af427f030 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 1.2E-157 T 15-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 NJ56_16800 78c0e788289011d18b6c6a1af427f030 336 SUPERFAMILY SSF51395 1 334 1.28E-104 T 15-10-2018 NJ56_03105 85763af52a690eed60715232e5c476d5 555 Pfam PF12848 ABC transporter 230 306 3.6E-12 T 15-10-2018 IPR032781 ABC-transporter extension domain NJ56_03105 85763af52a690eed60715232e5c476d5 555 Pfam PF00005 ABC transporter 22 191 6.1E-30 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_03105 85763af52a690eed60715232e5c476d5 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 3.1E-294 T 15-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 NJ56_03105 85763af52a690eed60715232e5c476d5 555 SUPERFAMILY SSF52540 11 243 1.27E-48 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03105 85763af52a690eed60715232e5c476d5 555 SMART SM00382 31 236 4.8E-8 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_03105 85763af52a690eed60715232e5c476d5 555 SMART SM00382 348 522 4.7E-12 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_03105 85763af52a690eed60715232e5c476d5 555 Pfam PF00005 ABC transporter 340 473 1.1E-22 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_03105 85763af52a690eed60715232e5c476d5 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_03105 85763af52a690eed60715232e5c476d5 555 SUPERFAMILY SSF52540 303 532 3.17E-47 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03105 85763af52a690eed60715232e5c476d5 555 Gene3D G3DSA:3.40.50.300 1 285 9.7E-88 T 15-10-2018 NJ56_03105 85763af52a690eed60715232e5c476d5 555 Gene3D G3DSA:3.40.50.300 286 555 7.1E-77 T 15-10-2018 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 362 3.8E-32 T 15-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 SUPERFAMILY SSF52540 35 222 1.62E-56 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01190 db8885175f81aaeac27935621f04e09c 648 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 356 8.2E-135 T 15-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 Gene3D G3DSA:3.30.300.150 502 630 1.9E-47 T 15-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 Gene3D G3DSA:3.40.50.300 13 177 1.6E-104 T 15-10-2018 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 1.8E-5 T 15-10-2018 IPR001270 ClpA/B family GO:0005524 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 1.8E-5 T 15-10-2018 IPR001270 ClpA/B family GO:0005524 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 SMART SM00382 37 178 2.1E-7 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_01190 db8885175f81aaeac27935621f04e09c 648 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 422 502 4.2E-21 T 15-10-2018 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 Pfam PF13177 DNA polymerase III, delta subunit 20 178 3.9E-42 T 15-10-2018 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 Gene3D G3DSA:1.20.272.10 242 363 1.6E-43 T 15-10-2018 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 Gene3D G3DSA:1.10.8.60 8 240 1.6E-104 T 15-10-2018 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 504 645 3.9E-60 T 15-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_01190 db8885175f81aaeac27935621f04e09c 648 SUPERFAMILY SSF48019 243 367 3.06E-35 T 15-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 NJ56_16665 51ae03a3d6916ed61255864ddba64b5b 575 SMART SM01091 492 572 4.1E-20 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_16665 51ae03a3d6916ed61255864ddba64b5b 575 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 575 50.003 T 15-10-2018 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 NJ56_16665 51ae03a3d6916ed61255864ddba64b5b 575 Pfam PF02080 TrkA-C domain 420 483 1.0E-12 T 15-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NJ56_16665 51ae03a3d6916ed61255864ddba64b5b 575 Gene3D G3DSA:3.30.70.1450 407 484 7.6E-12 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_16665 51ae03a3d6916ed61255864ddba64b5b 575 Gene3D G3DSA:1.20.1530.20 7 391 6.0E-17 T 15-10-2018 IPR038770 Sodium/solute symporter superfamily NJ56_16665 51ae03a3d6916ed61255864ddba64b5b 575 Pfam PF03471 Transporter associated domain 493 570 1.6E-14 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_16665 51ae03a3d6916ed61255864ddba64b5b 575 Gene3D G3DSA:3.30.465.10 486 570 6.1E-11 T 15-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 NJ56_16665 51ae03a3d6916ed61255864ddba64b5b 575 Pfam PF00999 Sodium/hydrogen exchanger family 15 387 6.5E-58 T 15-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 NJ56_16665 51ae03a3d6916ed61255864ddba64b5b 575 SUPERFAMILY SSF116726 419 483 7.59E-11 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_16665 51ae03a3d6916ed61255864ddba64b5b 575 SUPERFAMILY SSF56176 497 570 6.54E-13 T 15-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 NJ56_15400 f647da03289661eb053c5536f489c6fb 268 Pfam PF00486 Transcriptional regulatory protein, C terminal 34 103 7.7E-11 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_15400 f647da03289661eb053c5536f489c6fb 268 Gene3D G3DSA:1.10.10.10 7 105 1.2E-13 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_15400 f647da03289661eb053c5536f489c6fb 268 SUPERFAMILY SSF46894 25 103 3.68E-12 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_15400 f647da03289661eb053c5536f489c6fb 268 SMART SM00862 26 103 4.5E-7 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_12265 057188d3e579f1a3b54f6b89ea9ae8c2 327 Gene3D G3DSA:3.40.50.300 2 195 5.6E-46 T 15-10-2018 NJ56_12265 057188d3e579f1a3b54f6b89ea9ae8c2 327 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 164 1.0E-40 T 15-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain NJ56_12265 057188d3e579f1a3b54f6b89ea9ae8c2 327 SMART SM00833 241 324 0.0011 T 15-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal NJ56_12265 057188d3e579f1a3b54f6b89ea9ae8c2 327 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 243 322 1.1E-6 T 15-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal NJ56_12265 057188d3e579f1a3b54f6b89ea9ae8c2 327 SUPERFAMILY SSF52540 6 163 3.47E-25 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05375 5c045ca4156ac92652a1e8c8af9a22d9 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 327 6.2E-99 T 15-10-2018 IPR016040 NAD(P)-binding domain NJ56_05375 5c045ca4156ac92652a1e8c8af9a22d9 355 Gene3D G3DSA:3.40.50.720 3 326 9.9E-140 T 15-10-2018 NJ56_05375 5c045ca4156ac92652a1e8c8af9a22d9 355 Gene3D G3DSA:3.90.25.10 202 334 9.9E-140 T 15-10-2018 NJ56_05375 5c045ca4156ac92652a1e8c8af9a22d9 355 SUPERFAMILY SSF51735 3 345 6.71E-95 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_05375 5c045ca4156ac92652a1e8c8af9a22d9 355 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 340 7.2E-161 T 15-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 489 2.0E-122 T 15-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 SUPERFAMILY SSF53187 180 496 6.91E-125 T 15-10-2018 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 SUPERFAMILY SSF52949 1 184 1.82E-51 T 15-10-2018 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 498 41.262 T 15-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 Gene3D G3DSA:3.40.220.10 1 159 7.3E-59 T 15-10-2018 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 6.5E-34 T 15-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 PRINTS PR00481 Cytosol aminopeptidase signature 346 366 8.0E-54 T 15-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 PRINTS PR00481 Cytosol aminopeptidase signature 374 389 8.0E-54 T 15-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 PRINTS PR00481 Cytosol aminopeptidase signature 287 308 8.0E-54 T 15-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 PRINTS PR00481 Cytosol aminopeptidase signature 324 345 8.0E-54 T 15-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 PRINTS PR00481 Cytosol aminopeptidase signature 265 282 8.0E-54 T 15-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 350 357 - T 15-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 NJ56_03605 d1748205f64663873560fe5fd14d8c51 503 Gene3D G3DSA:3.40.630.10 181 498 1.3E-141 T 15-10-2018 NJ56_11765 e1fdfd82e885d953cd05f85238ecab3f 323 SMART SM00922 115 210 2.5E-8 T 15-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal NJ56_11765 e1fdfd82e885d953cd05f85238ecab3f 323 SUPERFAMILY SSF51604 108 313 8.38E-51 T 15-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily NJ56_11765 e1fdfd82e885d953cd05f85238ecab3f 323 Gene3D G3DSA:3.20.20.120 98 295 3.7E-125 T 15-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily NJ56_11765 e1fdfd82e885d953cd05f85238ecab3f 323 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 7 307 8.9E-115 T 15-10-2018 NJ56_11765 e1fdfd82e885d953cd05f85238ecab3f 323 SUPERFAMILY SSF54826 1 99 9.42E-28 T 15-10-2018 NJ56_11765 e1fdfd82e885d953cd05f85238ecab3f 323 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 4 321 23.258 T 15-10-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 NJ56_11765 e1fdfd82e885d953cd05f85238ecab3f 323 Pfam PF13378 Enolase C-terminal domain-like 129 279 4.7E-14 T 15-10-2018 IPR029065 Enolase C-terminal domain-like NJ56_11765 e1fdfd82e885d953cd05f85238ecab3f 323 Gene3D G3DSA:3.30.390.10 4 302 3.7E-125 T 15-10-2018 IPR029017 Enolase-like, N-terminal NJ56_02875 31ce0fe3e2a19d2d215d3eee33746fac 270 Pfam PF00226 DnaJ domain 207 266 2.7E-9 T 15-10-2018 IPR001623 DnaJ domain NJ56_02875 31ce0fe3e2a19d2d215d3eee33746fac 270 PRINTS PR00625 DnaJ domain signature 224 239 4.4E-6 T 15-10-2018 IPR001623 DnaJ domain NJ56_02875 31ce0fe3e2a19d2d215d3eee33746fac 270 PRINTS PR00625 DnaJ domain signature 206 224 4.4E-6 T 15-10-2018 IPR001623 DnaJ domain NJ56_02875 31ce0fe3e2a19d2d215d3eee33746fac 270 PRINTS PR00625 DnaJ domain signature 248 268 4.4E-6 T 15-10-2018 IPR001623 DnaJ domain NJ56_02875 31ce0fe3e2a19d2d215d3eee33746fac 270 Pfam PF05099 Tellurite resistance protein TerB 51 171 2.2E-11 T 15-10-2018 IPR007791 Co-chaperone DjlA, N-terminal NJ56_02875 31ce0fe3e2a19d2d215d3eee33746fac 270 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 269 39.859 T 15-10-2018 IPR023749 Co-chaperone DjlA GO:0051087 NJ56_02875 31ce0fe3e2a19d2d215d3eee33746fac 270 SUPERFAMILY SSF46565 132 266 8.58E-29 T 15-10-2018 IPR036869 Chaperone J-domain superfamily NJ56_02875 31ce0fe3e2a19d2d215d3eee33746fac 270 Gene3D G3DSA:1.10.3680.10 39 185 3.9E-21 T 15-10-2018 IPR029024 TerB-like NJ56_02875 31ce0fe3e2a19d2d215d3eee33746fac 270 SMART SM00271 203 268 1.0E-14 T 15-10-2018 IPR001623 DnaJ domain NJ56_02875 31ce0fe3e2a19d2d215d3eee33746fac 270 Gene3D G3DSA:1.10.287.110 189 268 9.2E-13 T 15-10-2018 IPR036869 Chaperone J-domain superfamily NJ56_12140 d3a1436177a6fa423047274d5f5f4c17 357 Gene3D G3DSA:3.30.1920.10 201 275 1.3E-104 T 15-10-2018 IPR023399 Baseplate-like, two-layer sandwich fold NJ56_12140 d3a1436177a6fa423047274d5f5f4c17 357 SUPERFAMILY SSF69279 1 176 3.51E-51 T 15-10-2018 NJ56_12140 d3a1436177a6fa423047274d5f5f4c17 357 Gene3D G3DSA:2.30.300.10 7 335 1.3E-104 T 15-10-2018 NJ56_12140 d3a1436177a6fa423047274d5f5f4c17 357 PIRSF PIRSF004440 1 356 2.9E-106 T 15-10-2018 IPR026276 Baseplate protein GpP NJ56_12140 d3a1436177a6fa423047274d5f5f4c17 357 Gene3D G3DSA:3.55.50.10 95 177 1.3E-104 T 15-10-2018 NJ56_12140 d3a1436177a6fa423047274d5f5f4c17 357 SUPERFAMILY SSF69279 181 342 3.12E-52 T 15-10-2018 NJ56_03715 ed054e79cedbf35a7154aad70ec54f1c 167 Gene3D G3DSA:3.40.630.30 1 167 7.3E-50 T 15-10-2018 NJ56_03715 ed054e79cedbf35a7154aad70ec54f1c 167 Pfam PF13508 Acetyltransferase (GNAT) domain 45 124 9.6E-9 T 15-10-2018 IPR000182 GNAT domain NJ56_03715 ed054e79cedbf35a7154aad70ec54f1c 167 SUPERFAMILY SSF55729 3 137 4.33E-23 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_00005 9441862a9accc2368ee20ecdbfeb934f 379 Pfam PF09330 D-lactate dehydrogenase, membrane binding 278 379 3.8E-41 T 15-10-2018 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 NJ56_00005 9441862a9accc2368ee20ecdbfeb934f 379 Gene3D G3DSA:3.30.43.10 2 103 7.8E-15 T 15-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 NJ56_00005 9441862a9accc2368ee20ecdbfeb934f 379 Gene3D G3DSA:3.30.70.610 269 344 1.4E-18 T 15-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 NJ56_00005 9441862a9accc2368ee20ecdbfeb934f 379 Gene3D G3DSA:3.30.465.10 106 268 1.7E-73 T 15-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 NJ56_00005 9441862a9accc2368ee20ecdbfeb934f 379 SUPERFAMILY SSF55103 276 379 6.28E-31 T 15-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 NJ56_00005 9441862a9accc2368ee20ecdbfeb934f 379 SUPERFAMILY SSF56176 10 271 3.78E-71 T 15-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 NJ56_00005 9441862a9accc2368ee20ecdbfeb934f 379 Pfam PF01565 FAD binding domain 47 163 3.0E-8 T 15-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 NJ56_13080 bbc541dd5813c719e0fbab12c4e226ef 959 Pfam PF02743 Cache domain 83 315 6.6E-15 T 15-10-2018 IPR033479 Double Cache domain 1 NJ56_13080 bbc541dd5813c719e0fbab12c4e226ef 959 SUPERFAMILY SSF109604 583 694 6.28E-8 T 15-10-2018 NJ56_13080 bbc541dd5813c719e0fbab12c4e226ef 959 Gene3D G3DSA:3.30.450.20 137 226 1.1E-11 T 15-10-2018 NJ56_13080 bbc541dd5813c719e0fbab12c4e226ef 959 SUPERFAMILY SSF103190 140 236 1.8E-8 T 15-10-2018 IPR029151 Periplasmic sensor-like domain superfamily NJ56_13080 bbc541dd5813c719e0fbab12c4e226ef 959 SUPERFAMILY SSF109604 810 915 8.79E-7 T 15-10-2018 NJ56_13080 bbc541dd5813c719e0fbab12c4e226ef 959 SMART SM00471 587 897 5.6E-5 T 15-10-2018 IPR003607 HD/PDEase domain NJ56_13080 bbc541dd5813c719e0fbab12c4e226ef 959 Gene3D G3DSA:1.20.1480.50 320 409 2.7E-5 T 15-10-2018 NJ56_13080 bbc541dd5813c719e0fbab12c4e226ef 959 Gene3D G3DSA:1.10.3210.10 805 935 4.0E-25 T 15-10-2018 NJ56_13080 bbc541dd5813c719e0fbab12c4e226ef 959 Gene3D G3DSA:1.10.3210.10 567 686 1.5E-17 T 15-10-2018 NJ56_13080 bbc541dd5813c719e0fbab12c4e226ef 959 Pfam PF13487 HD domain 814 879 2.5E-22 T 15-10-2018 NJ56_01750 5593597df3d59f0d139a87b15d1fddda 413 Pfam PF03116 NQR2, RnfD, RnfE family 43 405 2.8E-106 T 15-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 NJ56_01750 5593597df3d59f0d139a87b15d1fddda 413 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 408 9.8E-194 T 15-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 NJ56_01750 5593597df3d59f0d139a87b15d1fddda 413 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 412 36.559 T 15-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 NJ56_01750 5593597df3d59f0d139a87b15d1fddda 413 PIRSF PIRSF016055 1 413 7.9E-196 T 15-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 NJ56_01015 2562a74afb4417cd58f36e970e122ee6 355 Gene3D G3DSA:3.40.50.20 1 70 3.2E-31 T 15-10-2018 NJ56_01015 2562a74afb4417cd58f36e970e122ee6 355 Gene3D G3DSA:3.30.1490.20 94 151 2.1E-20 T 15-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 NJ56_01015 2562a74afb4417cd58f36e970e122ee6 355 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 330 6.3E-109 T 15-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 NJ56_01015 2562a74afb4417cd58f36e970e122ee6 355 Gene3D G3DSA:3.30.470.20 152 355 2.3E-79 T 15-10-2018 NJ56_01015 2562a74afb4417cd58f36e970e122ee6 355 Pfam PF02222 ATP-grasp domain 88 254 1.1E-52 T 15-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type NJ56_01015 2562a74afb4417cd58f36e970e122ee6 355 SUPERFAMILY SSF51246 278 353 1.02E-19 T 15-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 NJ56_01015 2562a74afb4417cd58f36e970e122ee6 355 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 325 32.679 T 15-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 NJ56_01015 2562a74afb4417cd58f36e970e122ee6 355 SUPERFAMILY SSF56059 79 274 2.42E-55 T 15-10-2018 NJ56_01015 2562a74afb4417cd58f36e970e122ee6 355 SUPERFAMILY SSF52440 2 74 1.58E-15 T 15-10-2018 IPR016185 Pre-ATP-grasp domain superfamily NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 Gene3D G3DSA:3.30.420.40 199 400 2.0E-87 T 15-10-2018 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 Pfam PF00871 Acetokinase family 6 393 1.9E-176 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 TIGRFAM TIGR00016 ackA: acetate kinase 1 399 2.1E-183 T 15-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 PIRSF PIRSF000722 2 400 3.9E-144 T 15-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 15-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 SUPERFAMILY SSF53067 160 398 8.64E-85 T 15-10-2018 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 Hamap MF_00020 Acetate kinase [ackA]. 1 400 188.463 T 15-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 PRINTS PR00471 Acetate kinase family signature 6 17 6.2E-49 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 PRINTS PR00471 Acetate kinase family signature 325 341 6.2E-49 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 PRINTS PR00471 Acetate kinase family signature 380 392 6.2E-49 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 PRINTS PR00471 Acetate kinase family signature 176 189 6.2E-49 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 PRINTS PR00471 Acetate kinase family signature 206 227 6.2E-49 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 PRINTS PR00471 Acetate kinase family signature 302 315 6.2E-49 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 SUPERFAMILY SSF53067 4 199 6.47E-63 T 15-10-2018 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 15-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_11625 d7a0c56c02467112a21eb0e18fb9d450 400 Gene3D G3DSA:3.30.420.40 3 198 2.4E-77 T 15-10-2018 NJ56_13965 addfead5f7525e029fe789bb4a966eec 194 Pfam PF00293 NUDIX domain 28 110 1.1E-12 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_13965 addfead5f7525e029fe789bb4a966eec 194 Gene3D G3DSA:3.90.79.10 9 187 3.9E-46 T 15-10-2018 NJ56_13965 addfead5f7525e029fe789bb4a966eec 194 SUPERFAMILY SSF55811 8 179 1.0E-31 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_13965 addfead5f7525e029fe789bb4a966eec 194 ProSitePatterns PS01293 Nudix CoA signature. 45 65 - T 15-10-2018 IPR000059 NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016818|GO:0030145 Reactome: R-HSA-390918|Reactome: R-HSA-9033241 NJ56_08665 bfd5f8b3906370af61e1f235f7ed14f3 415 SMART SM00471 224 359 1.0E-4 T 15-10-2018 IPR003607 HD/PDEase domain NJ56_08665 bfd5f8b3906370af61e1f235f7ed14f3 415 PIRSF PIRSF000813 1 408 2.4E-202 T 15-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 NJ56_08665 bfd5f8b3906370af61e1f235f7ed14f3 415 SUPERFAMILY SSF81301 2 119 1.02E-29 T 15-10-2018 NJ56_08665 bfd5f8b3906370af61e1f235f7ed14f3 415 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.966 T 15-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 NJ56_08665 bfd5f8b3906370af61e1f235f7ed14f3 415 Gene3D G3DSA:3.30.460.10 1 121 3.5E-27 T 15-10-2018 NJ56_08665 bfd5f8b3906370af61e1f235f7ed14f3 415 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 46.314 T 15-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 NJ56_08665 bfd5f8b3906370af61e1f235f7ed14f3 415 SUPERFAMILY SSF81891 120 402 6.8E-58 T 15-10-2018 NJ56_08665 bfd5f8b3906370af61e1f235f7ed14f3 415 Pfam PF01966 HD domain 229 327 3.9E-13 T 15-10-2018 IPR006674 HD domain NJ56_08665 bfd5f8b3906370af61e1f235f7ed14f3 415 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 2.5E-18 T 15-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 NJ56_08665 bfd5f8b3906370af61e1f235f7ed14f3 415 Pfam PF01743 Poly A polymerase head domain 3 122 2.7E-17 T 15-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 NJ56_08665 bfd5f8b3906370af61e1f235f7ed14f3 415 Gene3D G3DSA:1.10.3090.10 122 407 4.5E-46 T 15-10-2018 NJ56_12250 28bbfe3de54a83c6f78cb0dd2ce21bdd 520 SUPERFAMILY SSF141868 271 516 1.57E-69 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_12250 28bbfe3de54a83c6f78cb0dd2ce21bdd 520 Gene3D G3DSA:3.20.20.450 264 519 5.3E-72 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_12250 28bbfe3de54a83c6f78cb0dd2ce21bdd 520 Pfam PF00563 EAL domain 272 504 7.7E-62 T 15-10-2018 IPR001633 EAL domain NJ56_12250 28bbfe3de54a83c6f78cb0dd2ce21bdd 520 Pfam PF12792 CSS motif domain associated with EAL 45 232 8.8E-36 T 15-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain NJ56_12250 28bbfe3de54a83c6f78cb0dd2ce21bdd 520 SMART SM00052 265 509 2.7E-82 T 15-10-2018 IPR001633 EAL domain NJ56_10415 66efd1496dcac32fafb770de778b8452 486 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 50 267 1.3E-32 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_10415 66efd1496dcac32fafb770de778b8452 486 Gene3D G3DSA:3.40.190.10 129 224 3.5E-61 T 15-10-2018 NJ56_10415 66efd1496dcac32fafb770de778b8452 486 Gene3D G3DSA:1.10.530.10 286 468 7.0E-36 T 15-10-2018 NJ56_10415 66efd1496dcac32fafb770de778b8452 486 SUPERFAMILY SSF53850 45 267 6.6E-37 T 15-10-2018 NJ56_10415 66efd1496dcac32fafb770de778b8452 486 SUPERFAMILY SSF53955 290 451 3.56E-37 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_10415 66efd1496dcac32fafb770de778b8452 486 SMART SM00062 44 268 5.4E-30 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_10415 66efd1496dcac32fafb770de778b8452 486 Pfam PF01464 Transglycosylase SLT domain 296 402 2.5E-25 T 15-10-2018 IPR008258 Transglycosylase SLT domain 1 NJ56_10415 66efd1496dcac32fafb770de778b8452 486 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 309 337 - T 15-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 NJ56_10415 66efd1496dcac32fafb770de778b8452 486 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 5 475 49.653 T 15-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 NJ56_10415 66efd1496dcac32fafb770de778b8452 486 Gene3D G3DSA:3.40.190.10 38 263 3.5E-61 T 15-10-2018 NJ56_16000 251be1ecd97815b03bde8d292dccb15e 567 SUPERFAMILY SSF52091 460 564 2.35E-14 T 15-10-2018 IPR036513 STAS domain superfamily NJ56_16000 251be1ecd97815b03bde8d292dccb15e 567 Pfam PF00916 Sulfate permease family 29 414 2.7E-81 T 15-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 NJ56_16000 251be1ecd97815b03bde8d292dccb15e 567 TIGRFAM TIGR00815 sulP: sulfate permease 18 558 1.9E-133 T 15-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 NJ56_16000 251be1ecd97815b03bde8d292dccb15e 567 Gene3D G3DSA:3.30.750.24 446 562 1.4E-21 T 15-10-2018 IPR036513 STAS domain superfamily NJ56_16000 251be1ecd97815b03bde8d292dccb15e 567 ProSitePatterns PS01130 SLC26A transporters signature. 58 79 - T 15-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 NJ56_16000 251be1ecd97815b03bde8d292dccb15e 567 Pfam PF01740 STAS domain 460 558 1.0E-9 T 15-10-2018 IPR002645 STAS domain NJ56_12615 9f3fbbcee9c59e81c96088cbc6996fdf 343 Pfam PF13343 Bacterial extracellular solute-binding protein 76 284 1.1E-31 T 15-10-2018 NJ56_12615 9f3fbbcee9c59e81c96088cbc6996fdf 343 PIRSF PIRSF002825 2 340 1.3E-69 T 15-10-2018 IPR026045 Ferric binding protein NJ56_12615 9f3fbbcee9c59e81c96088cbc6996fdf 343 Gene3D G3DSA:3.40.190.10 133 320 2.5E-119 T 15-10-2018 NJ56_12615 9f3fbbcee9c59e81c96088cbc6996fdf 343 SUPERFAMILY SSF53850 24 324 1.78E-71 T 15-10-2018 NJ56_12615 9f3fbbcee9c59e81c96088cbc6996fdf 343 Gene3D G3DSA:3.40.190.10 31 306 2.5E-119 T 15-10-2018 NJ56_04300 a1089117875e91bf10fd00947e19f36e 474 Pfam PF07514 Putative helicase 27 240 5.8E-43 T 15-10-2018 IPR011119 Uncharacterised domain, helicase/relaxase, putative NJ56_04300 a1089117875e91bf10fd00947e19f36e 474 Gene3D G3DSA:1.10.3210.40 30 248 7.6E-14 T 15-10-2018 NJ56_04300 a1089117875e91bf10fd00947e19f36e 474 Gene3D G3DSA:2.40.10.200 371 467 4.3E-33 T 15-10-2018 NJ56_04300 a1089117875e91bf10fd00947e19f36e 474 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 354 470 9.3E-22 T 15-10-2018 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal NJ56_04300 a1089117875e91bf10fd00947e19f36e 474 Gene3D G3DSA:1.10.10.10 355 417 4.3E-33 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_04300 a1089117875e91bf10fd00947e19f36e 474 SUPERFAMILY SSF46785 351 471 7.34E-29 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_04300 a1089117875e91bf10fd00947e19f36e 474 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 27 240 3.9E-80 T 15-10-2018 IPR022391 Integrating conjugative element relaxase, PFGI-1 class NJ56_11650 bc9423b7ffd66a177496a00d62e2d1fa 199 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 3 195 45.601 T 15-10-2018 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 NJ56_11650 bc9423b7ffd66a177496a00d62e2d1fa 199 Pfam PF13023 HD domain 11 161 3.5E-18 T 15-10-2018 IPR006674 HD domain NJ56_11650 bc9423b7ffd66a177496a00d62e2d1fa 199 SUPERFAMILY SSF109604 3 185 9.71E-45 T 15-10-2018 NJ56_11650 bc9423b7ffd66a177496a00d62e2d1fa 199 SMART SM00471 26 151 7.1E-7 T 15-10-2018 IPR003607 HD/PDEase domain NJ56_11650 bc9423b7ffd66a177496a00d62e2d1fa 199 Gene3D G3DSA:1.10.3210.10 1 198 4.8E-87 T 15-10-2018 NJ56_11650 bc9423b7ffd66a177496a00d62e2d1fa 199 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 80 176 4.0E-48 T 15-10-2018 NJ56_17060 b1a4a6a118c253465d8a116cb455620d 550 Gene3D G3DSA:1.20.1270.20 149 232 2.0E-29 T 15-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 NJ56_17060 b1a4a6a118c253465d8a116cb455620d 550 SUPERFAMILY SSF56821 1 548 1.53E-185 T 15-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 NJ56_17060 b1a4a6a118c253465d8a116cb455620d 550 Gene3D G3DSA:3.40.50.2030 234 379 2.7E-59 T 15-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 NJ56_17060 b1a4a6a118c253465d8a116cb455620d 550 Gene3D G3DSA:1.20.1270.20 1 140 2.9E-37 T 15-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 NJ56_17060 b1a4a6a118c253465d8a116cb455620d 550 Gene3D G3DSA:3.40.50.2030 380 548 2.3E-58 T 15-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 NJ56_17060 b1a4a6a118c253465d8a116cb455620d 550 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 548 5.0E-241 T 15-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 NJ56_17060 b1a4a6a118c253465d8a116cb455620d 550 Pfam PF03063 Prismane/CO dehydrogenase family 1 544 3.2E-158 T 15-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 NJ56_17060 b1a4a6a118c253465d8a116cb455620d 550 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 549 20.592 T 15-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 NJ56_17060 b1a4a6a118c253465d8a116cb455620d 550 PIRSF PIRSF000076 1 550 5.5E-238 T 15-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 NJ56_07785 36d6999990bf0744461cda600a976c8d 296 Gene3D G3DSA:1.10.3720.10 1 283 1.7E-73 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_07785 36d6999990bf0744461cda600a976c8d 296 SUPERFAMILY SSF161098 8 296 1.59E-69 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_07785 36d6999990bf0744461cda600a976c8d 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 286 3.9E-16 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_00865 eb6f88f9d4142fbb0cd328f4942932fe 470 ProSitePatterns PS00455 Putative AMP-binding domain signature. 126 137 - T 15-10-2018 IPR020845 AMP-binding, conserved site NJ56_00865 eb6f88f9d4142fbb0cd328f4942932fe 470 SUPERFAMILY SSF56801 2 465 1.31E-81 T 15-10-2018 NJ56_00865 eb6f88f9d4142fbb0cd328f4942932fe 470 Gene3D G3DSA:3.40.50.12780 1 355 2.6E-64 T 15-10-2018 NJ56_00865 eb6f88f9d4142fbb0cd328f4942932fe 470 Pfam PF00501 AMP-binding enzyme 2 359 3.6E-50 T 15-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 NJ56_09160 6ba8d4203332b68e83a53c9e9d1c3514 105 SUPERFAMILY SSF46785 14 102 1.65E-24 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_09160 6ba8d4203332b68e83a53c9e9d1c3514 105 Gene3D G3DSA:1.10.10.10 2 102 1.1E-24 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_09160 6ba8d4203332b68e83a53c9e9d1c3514 105 SMART SM00418 21 99 8.0E-23 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_09160 6ba8d4203332b68e83a53c9e9d1c3514 105 Pfam PF01022 Bacterial regulatory protein, arsR family 29 73 4.8E-11 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_09160 6ba8d4203332b68e83a53c9e9d1c3514 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 23 38 6.1E-11 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_09160 6ba8d4203332b68e83a53c9e9d1c3514 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 6.1E-11 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_09160 6ba8d4203332b68e83a53c9e9d1c3514 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 70 85 6.1E-11 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_01210 52fbb71e7fca84622800789333e53e16 143 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 6 137 4.4E-18 T 15-10-2018 IPR009936 Protein of unknown function DUF1468 NJ56_04155 6760010d73b39e3d87c575ab9733dbe6 349 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 72 333 3.9E-92 T 15-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 NJ56_04155 6760010d73b39e3d87c575ab9733dbe6 349 SUPERFAMILY SSF52540 112 339 9.94E-56 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04155 6760010d73b39e3d87c575ab9733dbe6 349 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 39 339 37.138 T 15-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 NJ56_04155 6760010d73b39e3d87c575ab9733dbe6 349 Gene3D G3DSA:1.10.40.50 275 349 1.2E-27 T 15-10-2018 NJ56_04155 6760010d73b39e3d87c575ab9733dbe6 349 Gene3D G3DSA:3.40.50.300 101 274 6.0E-47 T 15-10-2018 NJ56_04155 6760010d73b39e3d87c575ab9733dbe6 349 Pfam PF03193 RsgA GTPase 98 275 1.0E-54 T 15-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 NJ56_04155 6760010d73b39e3d87c575ab9733dbe6 349 Gene3D G3DSA:2.40.50.140 34 100 6.0E-26 T 15-10-2018 NJ56_12605 f659242c1b6d25830771f1ead57eb285 356 Pfam PF08402 TOBE domain 282 353 1.8E-9 T 15-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 NJ56_12605 f659242c1b6d25830771f1ead57eb285 356 SMART SM00382 39 222 2.4E-16 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_12605 f659242c1b6d25830771f1ead57eb285 356 SUPERFAMILY SSF52540 15 254 1.24E-85 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_12605 f659242c1b6d25830771f1ead57eb285 356 Pfam PF00005 ABC transporter 31 172 3.6E-35 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_12605 f659242c1b6d25830771f1ead57eb285 356 Gene3D G3DSA:3.40.50.300 14 232 3.5E-69 T 15-10-2018 NJ56_12605 f659242c1b6d25830771f1ead57eb285 356 Gene3D G3DSA:2.40.50.940 233 347 1.0E-10 T 15-10-2018 NJ56_12605 f659242c1b6d25830771f1ead57eb285 356 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_12605 f659242c1b6d25830771f1ead57eb285 356 SUPERFAMILY SSF50331 248 353 1.46E-12 T 15-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal NJ56_12605 f659242c1b6d25830771f1ead57eb285 356 Gene3D G3DSA:2.40.50.140 289 345 1.0E-10 T 15-10-2018 NJ56_05000 7b605a2ffc0b4fced44ab34ab65aa052 357 SUPERFAMILY SSF50331 237 356 2.67E-24 T 15-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal NJ56_05000 7b605a2ffc0b4fced44ab34ab65aa052 357 SUPERFAMILY SSF52540 4 242 1.23E-85 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05000 7b605a2ffc0b4fced44ab34ab65aa052 357 Gene3D G3DSA:2.40.50.140 285 340 1.1E-26 T 15-10-2018 NJ56_05000 7b605a2ffc0b4fced44ab34ab65aa052 357 SMART SM00382 29 212 2.4E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_05000 7b605a2ffc0b4fced44ab34ab65aa052 357 Gene3D G3DSA:2.40.50.940 223 349 1.1E-26 T 15-10-2018 NJ56_05000 7b605a2ffc0b4fced44ab34ab65aa052 357 Pfam PF08402 TOBE domain 278 348 6.0E-6 T 15-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 NJ56_05000 7b605a2ffc0b4fced44ab34ab65aa052 357 Pfam PF00005 ABC transporter 21 162 3.5E-30 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_05000 7b605a2ffc0b4fced44ab34ab65aa052 357 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_05000 7b605a2ffc0b4fced44ab34ab65aa052 357 Gene3D G3DSA:3.40.50.300 3 222 2.0E-63 T 15-10-2018 NJ56_08425 ee92fdf3607c1e27bd074fc2a890d0b4 415 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 5 406 36.65 T 15-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 NJ56_08425 ee92fdf3607c1e27bd074fc2a890d0b4 415 PRINTS PR00173 Glutamate-aspartate symporter signature 351 371 6.4E-15 T 15-10-2018 NJ56_08425 ee92fdf3607c1e27bd074fc2a890d0b4 415 PRINTS PR00173 Glutamate-aspartate symporter signature 187 206 6.4E-15 T 15-10-2018 NJ56_08425 ee92fdf3607c1e27bd074fc2a890d0b4 415 PRINTS PR00173 Glutamate-aspartate symporter signature 324 343 6.4E-15 T 15-10-2018 NJ56_08425 ee92fdf3607c1e27bd074fc2a890d0b4 415 PRINTS PR00173 Glutamate-aspartate symporter signature 289 315 6.4E-15 T 15-10-2018 NJ56_08425 ee92fdf3607c1e27bd074fc2a890d0b4 415 PRINTS PR00173 Glutamate-aspartate symporter signature 17 37 6.4E-15 T 15-10-2018 NJ56_08425 ee92fdf3607c1e27bd074fc2a890d0b4 415 PRINTS PR00173 Glutamate-aspartate symporter signature 222 241 6.4E-15 T 15-10-2018 NJ56_08425 ee92fdf3607c1e27bd074fc2a890d0b4 415 Gene3D G3DSA:1.10.3860.10 9 404 3.7E-68 T 15-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 NJ56_08425 ee92fdf3607c1e27bd074fc2a890d0b4 415 Pfam PF00375 Sodium:dicarboxylate symporter family 17 396 3.2E-61 T 15-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 NJ56_08425 ee92fdf3607c1e27bd074fc2a890d0b4 415 SUPERFAMILY SSF118215 17 399 2.22E-94 T 15-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 236 253 2.0E-66 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 2.0E-66 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 151 173 2.0E-66 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 96 118 2.0E-66 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 276 295 2.0E-66 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 2.0E-66 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 Gene3D G3DSA:2.40.160.10 22 365 1.1E-152 T 15-10-2018 IPR023614 Porin domain superfamily NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 SUPERFAMILY SSF56935 22 365 1.49E-80 T 15-10-2018 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 9.4E-16 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 96 106 9.4E-16 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 320 337 9.4E-16 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 230 242 9.4E-16 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 153 164 9.4E-16 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_17500 29fd86c4327c5ab79e461a0a6987d8ec 365 Pfam PF00267 Gram-negative porin 27 365 9.6E-145 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_14295 2eb1ec29a126060f82af3c98f3f0e1b0 195 Gene3D G3DSA:1.10.3290.10 7 195 2.4E-55 T 15-10-2018 IPR036597 Fido-like domain superfamily NJ56_14295 2eb1ec29a126060f82af3c98f3f0e1b0 195 SUPERFAMILY SSF140931 43 194 3.4E-33 T 15-10-2018 IPR036597 Fido-like domain superfamily NJ56_14295 2eb1ec29a126060f82af3c98f3f0e1b0 195 Pfam PF02661 Fic/DOC family 59 153 3.0E-16 T 15-10-2018 IPR003812 Fido domain NJ56_07370 d305b00517326bef1e89d277cb230d97 201 Gene3D G3DSA:3.40.1370.10 3 201 2.7E-68 T 15-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 NJ56_07370 d305b00517326bef1e89d277cb230d97 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 13 198 1.6E-74 T 15-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07370 d305b00517326bef1e89d277cb230d97 201 SUPERFAMILY SSF52166 9 200 7.19E-73 T 15-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 NJ56_07370 d305b00517326bef1e89d277cb230d97 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 201 33.998 T 15-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07370 d305b00517326bef1e89d277cb230d97 201 Pfam PF00573 Ribosomal protein L4/L1 family 13 198 6.3E-64 T 15-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 NJ56_13910 ad02b3f295d0a478a81c95ecc331cea8 376 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 333 352 - T 15-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 NJ56_13910 ad02b3f295d0a478a81c95ecc331cea8 376 SUPERFAMILY SSF47203 225 374 3.87E-37 T 15-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 NJ56_13910 ad02b3f295d0a478a81c95ecc331cea8 376 Gene3D G3DSA:1.20.140.10 234 376 8.5E-36 T 15-10-2018 NJ56_13910 ad02b3f295d0a478a81c95ecc331cea8 376 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 115 1.1E-25 T 15-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 NJ56_13910 ad02b3f295d0a478a81c95ecc331cea8 376 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 119 214 2.3E-22 T 15-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 NJ56_13910 ad02b3f295d0a478a81c95ecc331cea8 376 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 374 1.4E-34 T 15-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 NJ56_13910 ad02b3f295d0a478a81c95ecc331cea8 376 Gene3D G3DSA:1.10.540.10 1 117 3.0E-26 T 15-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 NJ56_13910 ad02b3f295d0a478a81c95ecc331cea8 376 Gene3D G3DSA:2.40.110.10 118 233 1.7E-36 T 15-10-2018 NJ56_13910 ad02b3f295d0a478a81c95ecc331cea8 376 SUPERFAMILY SSF56645 3 237 4.45E-67 T 15-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 NJ56_05110 e19fd199fe069f75866db8b600acd945 528 SUPERFAMILY SSF47364 225 304 2.49E-22 T 15-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 NJ56_05110 e19fd199fe069f75866db8b600acd945 528 SMART SM00962 324 525 1.3E-122 T 15-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 NJ56_05110 e19fd199fe069f75866db8b600acd945 528 Gene3D G3DSA:3.40.50.300 324 513 9.4E-117 T 15-10-2018 NJ56_05110 e19fd199fe069f75866db8b600acd945 528 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 253 524 6.2E-115 T 15-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 NJ56_05110 e19fd199fe069f75866db8b600acd945 528 SUPERFAMILY SSF52540 320 524 5.69E-53 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05110 e19fd199fe069f75866db8b600acd945 528 Gene3D G3DSA:1.20.120.140 227 523 9.4E-117 T 15-10-2018 NJ56_05110 e19fd199fe069f75866db8b600acd945 528 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 253 525 65.233 T 15-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 NJ56_05110 e19fd199fe069f75866db8b600acd945 528 Pfam PF02881 SRP54-type protein, helical bundle domain 241 306 3.2E-13 T 15-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 NJ56_05110 e19fd199fe069f75866db8b600acd945 528 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 498 511 - T 15-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 NJ56_05110 e19fd199fe069f75866db8b600acd945 528 Pfam PF00448 SRP54-type protein, GTPase domain 325 524 2.6E-77 T 15-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 NJ56_05110 e19fd199fe069f75866db8b600acd945 528 SMART SM00963 230 310 9.8E-26 T 15-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 NJ56_05110 e19fd199fe069f75866db8b600acd945 528 SMART SM00382 323 514 1.9E-9 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 15-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.3E-49 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.3E-49 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.3E-49 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.3E-49 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 1.3E-49 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.3E-49 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 1.8E-99 T 15-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 3.2E-15 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 3.2E-15 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 3.2E-15 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 5.0E-5 T 15-10-2018 NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 Gene3D G3DSA:3.40.50.720 1 244 9.5E-85 T 15-10-2018 NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 8.4E-66 T 15-10-2018 NJ56_16530 1bb141a3d7f1f3c11379a3fbd0d5f65e 244 SUPERFAMILY SSF51735 4 243 2.06E-85 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_09500 2050e0a8724a7e32282d8d2fa5cdbc65 175 SUPERFAMILY SSF55811 6 155 4.2E-33 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_09500 2050e0a8724a7e32282d8d2fa5cdbc65 175 Gene3D G3DSA:3.90.79.10 1 160 3.6E-53 T 15-10-2018 NJ56_09500 2050e0a8724a7e32282d8d2fa5cdbc65 175 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 38.222 T 15-10-2018 IPR022927 RNA pyrophosphohydrolase RppH NJ56_09500 2050e0a8724a7e32282d8d2fa5cdbc65 175 Pfam PF00293 NUDIX domain 7 146 1.1E-28 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_09500 2050e0a8724a7e32282d8d2fa5cdbc65 175 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 15-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NJ56_09500 2050e0a8724a7e32282d8d2fa5cdbc65 175 PRINTS PR00502 NUDIX hydrolase family signature 47 62 6.2E-8 T 15-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 NJ56_09500 2050e0a8724a7e32282d8d2fa5cdbc65 175 PRINTS PR00502 NUDIX hydrolase family signature 33 47 6.2E-8 T 15-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 NJ56_11500 cf6ac1af8c704947ebeca62f3cc8a9be 257 Pfam PF07883 Cupin domain 27 87 1.6E-6 T 15-10-2018 IPR013096 Cupin 2, conserved barrel NJ56_11500 cf6ac1af8c704947ebeca62f3cc8a9be 257 SUPERFAMILY SSF51182 14 88 1.02E-11 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_11500 cf6ac1af8c704947ebeca62f3cc8a9be 257 Gene3D G3DSA:2.60.120.10 14 92 2.3E-8 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_11500 cf6ac1af8c704947ebeca62f3cc8a9be 257 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 207 250 - T 15-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 NJ56_11500 cf6ac1af8c704947ebeca62f3cc8a9be 257 Gene3D G3DSA:1.10.10.60 157 257 1.7E-22 T 15-10-2018 NJ56_11500 cf6ac1af8c704947ebeca62f3cc8a9be 257 SMART SM00342 172 254 1.3E-21 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_11500 cf6ac1af8c704947ebeca62f3cc8a9be 257 Pfam PF12833 Helix-turn-helix domain 178 255 4.5E-22 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_11500 cf6ac1af8c704947ebeca62f3cc8a9be 257 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 254 2.3E-5 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_11500 cf6ac1af8c704947ebeca62f3cc8a9be 257 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 223 238 2.3E-5 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_11500 cf6ac1af8c704947ebeca62f3cc8a9be 257 SUPERFAMILY SSF46689 208 256 1.08E-9 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_11265 f4bbc9c14895264e3fb69537341a7738 321 Gene3D G3DSA:3.30.420.40 6 308 4.0E-117 T 15-10-2018 NJ56_11265 f4bbc9c14895264e3fb69537341a7738 321 SUPERFAMILY SSF53067 4 317 1.77E-62 T 15-10-2018 NJ56_11265 f4bbc9c14895264e3fb69537341a7738 321 Hamap MF_00524 Glucokinase [glk]. 4 316 35.599 T 15-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 NJ56_11265 f4bbc9c14895264e3fb69537341a7738 321 TIGRFAM TIGR00749 glk: glucokinase 6 310 5.5E-136 T 15-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 NJ56_11265 f4bbc9c14895264e3fb69537341a7738 321 Gene3D G3DSA:3.40.367.20 100 299 4.0E-117 T 15-10-2018 NJ56_11265 f4bbc9c14895264e3fb69537341a7738 321 Pfam PF02685 Glucokinase 6 315 7.0E-123 T 15-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 NJ56_00165 710ff9182d7038559880d98474179114 256 Gene3D G3DSA:3.40.190.10 29 253 1.4E-85 T 15-10-2018 NJ56_00165 710ff9182d7038559880d98474179114 256 SUPERFAMILY SSF53850 26 255 1.99E-69 T 15-10-2018 NJ56_00165 710ff9182d7038559880d98474179114 256 Gene3D G3DSA:3.40.190.10 106 217 1.4E-85 T 15-10-2018 NJ56_00165 710ff9182d7038559880d98474179114 256 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 33 252 8.9E-80 T 15-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 NJ56_00165 710ff9182d7038559880d98474179114 256 Pfam PF13531 Bacterial extracellular solute-binding protein 28 253 1.3E-46 T 15-10-2018 NJ56_00165 710ff9182d7038559880d98474179114 256 PIRSF PIRSF004846 7 256 4.0E-78 T 15-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 NJ56_16715 42d9dbc50b1a0e07a6a7699cd662d186 684 Gene3D G3DSA:3.40.50.300 345 499 6.8E-21 T 15-10-2018 NJ56_16715 42d9dbc50b1a0e07a6a7699cd662d186 684 Pfam PF12462 DNA helicase IV / RNA helicase N terminal 1 163 1.2E-64 T 15-10-2018 IPR022161 DNA helicase IV, N-terminal domain NJ56_16715 42d9dbc50b1a0e07a6a7699cd662d186 684 Gene3D G3DSA:3.40.50.300 188 334 1.1E-28 T 15-10-2018 NJ56_16715 42d9dbc50b1a0e07a6a7699cd662d186 684 Gene3D G3DSA:3.40.50.300 500 676 1.6E-26 T 15-10-2018 NJ56_16715 42d9dbc50b1a0e07a6a7699cd662d186 684 Pfam PF13361 UvrD-like helicase C-terminal domain 518 659 1.3E-15 T 15-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 NJ56_16715 42d9dbc50b1a0e07a6a7699cd662d186 684 SUPERFAMILY SSF52540 195 676 1.87E-84 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16715 42d9dbc50b1a0e07a6a7699cd662d186 684 Pfam PF00580 UvrD/REP helicase N-terminal domain 197 490 2.0E-41 T 15-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 NJ56_03080 a313ec560aa8e6817fd995700182d7e3 113 Gene3D G3DSA:1.10.1270.10 9 108 3.7E-37 T 15-10-2018 IPR038116 TrpR-like superfamily NJ56_03080 a313ec560aa8e6817fd995700182d7e3 113 TIGRFAM TIGR01321 TrpR: trp operon repressor 14 104 6.2E-35 T 15-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 NJ56_03080 a313ec560aa8e6817fd995700182d7e3 113 Pfam PF01371 Trp repressor protein 17 103 8.0E-30 T 15-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 NJ56_03080 a313ec560aa8e6817fd995700182d7e3 113 PIRSF PIRSF003196 1 109 5.0E-41 T 15-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 NJ56_03080 a313ec560aa8e6817fd995700182d7e3 113 SUPERFAMILY SSF48295 6 104 1.26E-28 T 15-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 NJ56_03080 a313ec560aa8e6817fd995700182d7e3 113 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 10 101 2.0E-34 T 15-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 NJ56_03080 a313ec560aa8e6817fd995700182d7e3 113 Hamap MF_00475 Trp operon repressor [trpR]. 15 108 23.759 T 15-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 15-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 Pfam PF10509 Galactokinase galactose-binding signature 11 57 5.1E-21 T 15-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 Gene3D G3DSA:3.30.230.10 23 201 3.8E-129 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 SUPERFAMILY SSF55060 205 382 2.56E-52 T 15-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 Hamap MF_00246 Galactokinase [galK]. 25 382 42.747 T 15-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 Pfam PF00288 GHMP kinases N terminal domain 114 181 6.5E-15 T 15-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 TIGRFAM TIGR00131 gal_kin: galactokinase 5 383 5.4E-154 T 15-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 Gene3D G3DSA:3.30.70.890 202 356 3.8E-129 T 15-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 Pfam PF08544 GHMP kinases C terminal 279 361 1.9E-10 T 15-10-2018 IPR013750 GHMP kinase, C-terminal domain NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 PRINTS PR00959 Mevalonate kinase family signature 25 49 1.5E-45 T 15-10-2018 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 PRINTS PR00959 Mevalonate kinase family signature 328 345 1.5E-45 T 15-10-2018 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 PRINTS PR00959 Mevalonate kinase family signature 162 181 1.5E-45 T 15-10-2018 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 PRINTS PR00959 Mevalonate kinase family signature 119 141 1.5E-45 T 15-10-2018 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 PIRSF PIRSF000530 1 383 1.7E-120 T 15-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 15-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 SUPERFAMILY SSF54211 3 203 7.59E-64 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 PRINTS PR00473 Galactokinase signature 92 103 7.7E-30 T 15-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 PRINTS PR00473 Galactokinase signature 263 277 7.7E-30 T 15-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 PRINTS PR00473 Galactokinase signature 27 45 7.7E-30 T 15-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 NJ56_00195 b60cf3ff433c37b64a1e90a4c76bda44 383 PRINTS PR00473 Galactokinase signature 112 130 7.7E-30 T 15-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 NJ56_06695 bddc46afdd4d9086c4a18cb8b44c521b 334 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_06695 bddc46afdd4d9086c4a18cb8b44c521b 334 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 239 323 1.6E-26 T 15-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 NJ56_06695 bddc46afdd4d9086c4a18cb8b44c521b 334 SUPERFAMILY SSF52540 12 260 2.15E-71 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06695 bddc46afdd4d9086c4a18cb8b44c521b 334 Pfam PF00005 ABC transporter 37 188 1.7E-31 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_06695 bddc46afdd4d9086c4a18cb8b44c521b 334 Gene3D G3DSA:3.40.50.300 10 332 8.1E-95 T 15-10-2018 NJ56_06695 bddc46afdd4d9086c4a18cb8b44c521b 334 SMART SM00382 46 238 3.7E-12 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_06695 bddc46afdd4d9086c4a18cb8b44c521b 334 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 305 1.7E-18 T 15-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 Pfam PF01464 Transglycosylase SLT domain 117 224 1.1E-27 T 15-10-2018 IPR008258 Transglycosylase SLT domain 1 NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 Gene3D G3DSA:3.10.350.10 405 454 5.2E-13 T 15-10-2018 IPR036779 LysM domain superfamily NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 Pfam PF01476 LysM domain 408 450 2.4E-9 T 15-10-2018 IPR018392 LysM domain NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 Pfam PF01476 LysM domain 355 396 3.0E-13 T 15-10-2018 IPR018392 LysM domain NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 Gene3D G3DSA:1.10.530.10 107 266 9.2E-33 T 15-10-2018 NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 SMART SM00257 354 398 2.8E-13 T 15-10-2018 IPR018392 LysM domain NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 SMART SM00257 407 452 4.0E-7 T 15-10-2018 IPR018392 LysM domain NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 131 159 - T 15-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 SUPERFAMILY SSF54106 406 452 1.96E-9 T 15-10-2018 NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 SUPERFAMILY SSF54106 353 397 2.09E-10 T 15-10-2018 NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 SUPERFAMILY SSF53955 109 261 3.66E-41 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_01805 0afdcacc342fe370ff657f7504a936ec 461 Gene3D G3DSA:3.10.350.10 350 404 6.6E-15 T 15-10-2018 IPR036779 LysM domain superfamily NJ56_00735 8f29c973c9b0dc6164ca9ac77891a8ce 159 SUPERFAMILY SSF50249 2 62 1.22E-10 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_00735 8f29c973c9b0dc6164ca9ac77891a8ce 159 Gene3D G3DSA:2.40.50.140 1 68 6.6E-18 T 15-10-2018 NJ56_00735 8f29c973c9b0dc6164ca9ac77891a8ce 159 Pfam PF00313 'Cold-shock' DNA-binding domain 1 61 1.9E-9 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_04170 2d2a99ca46e600ebf46c0be7c78f1b14 325 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 2 325 56.945 T 15-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 NJ56_04170 2d2a99ca46e600ebf46c0be7c78f1b14 325 SUPERFAMILY SSF55681 13 323 8.04E-83 T 15-10-2018 NJ56_04170 2d2a99ca46e600ebf46c0be7c78f1b14 325 Gene3D G3DSA:3.30.930.10 1 325 1.6E-123 T 15-10-2018 NJ56_04170 2d2a99ca46e600ebf46c0be7c78f1b14 325 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 17 320 2.2E-130 T 15-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 NJ56_04170 2d2a99ca46e600ebf46c0be7c78f1b14 325 Pfam PF00152 tRNA synthetases class II (D, K and N) 14 322 6.8E-47 T 15-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_04170 2d2a99ca46e600ebf46c0be7c78f1b14 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 31 41 6.2E-6 T 15-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 NJ56_04170 2d2a99ca46e600ebf46c0be7c78f1b14 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 99 116 6.2E-6 T 15-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 NJ56_09490 4862e30988b9122ba6ee86cbd4199f09 228 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 11 226 4.3E-108 T 15-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 NJ56_09490 4862e30988b9122ba6ee86cbd4199f09 228 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 228 154.329 T 15-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 NJ56_09490 4862e30988b9122ba6ee86cbd4199f09 228 Gene3D G3DSA:3.40.600.10 1 228 4.8E-54 T 15-10-2018 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily GO:0003677|GO:0004519 NJ56_09490 4862e30988b9122ba6ee86cbd4199f09 228 SMART SM00927 59 157 2.2E-66 T 15-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 NJ56_09490 4862e30988b9122ba6ee86cbd4199f09 228 Pfam PF02976 DNA mismatch repair enzyme MutH 59 157 4.3E-34 T 15-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 NJ56_09490 4862e30988b9122ba6ee86cbd4199f09 228 SUPERFAMILY SSF52980 10 227 3.38E-82 T 15-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 NJ56_05410 c832dfa91f9b986bc6016a82588114a9 429 SMART SM00487 28 234 2.7E-51 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_05410 c832dfa91f9b986bc6016a82588114a9 429 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 15-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site NJ56_05410 c832dfa91f9b986bc6016a82588114a9 429 Gene3D G3DSA:3.40.50.300 227 393 1.6E-44 T 15-10-2018 NJ56_05410 c832dfa91f9b986bc6016a82588114a9 429 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.455 T 15-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 NJ56_05410 c832dfa91f9b986bc6016a82588114a9 429 SMART SM00490 270 351 4.5E-30 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_05410 c832dfa91f9b986bc6016a82588114a9 429 Gene3D G3DSA:3.40.50.300 2 222 3.4E-67 T 15-10-2018 NJ56_05410 c832dfa91f9b986bc6016a82588114a9 429 Pfam PF00270 DEAD/DEAH box helicase 33 206 3.3E-44 T 15-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NJ56_05410 c832dfa91f9b986bc6016a82588114a9 429 Pfam PF00271 Helicase conserved C-terminal domain 243 351 2.5E-28 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_05410 c832dfa91f9b986bc6016a82588114a9 429 SUPERFAMILY SSF52540 84 363 9.43E-69 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05720 3be3927890c90337a5bd69616418f445 161 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 45.83 T 15-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 NJ56_05720 3be3927890c90337a5bd69616418f445 161 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 161 1.2E-85 T 15-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 NJ56_05720 3be3927890c90337a5bd69616418f445 161 Gene3D G3DSA:3.50.30.40 1 161 3.9E-61 T 15-10-2018 NJ56_05720 3be3927890c90337a5bd69616418f445 161 Pfam PF03737 Aldolase/RraA 6 152 1.2E-35 T 15-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein NJ56_05720 3be3927890c90337a5bd69616418f445 161 SUPERFAMILY SSF89562 2 158 7.85E-44 T 15-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily NJ56_05720 3be3927890c90337a5bd69616418f445 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 2.9E-61 T 15-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 NJ56_06260 e3a93d8fadcd5d0bc4775838641dbb15 289 Pfam PF00231 ATP synthase 5 288 7.6E-96 T 15-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06260 e3a93d8fadcd5d0bc4775838641dbb15 289 SUPERFAMILY SSF52943 2 289 6.93E-96 T 15-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06260 e3a93d8fadcd5d0bc4775838641dbb15 289 Gene3D G3DSA:3.40.1380.10 61 208 4.1E-111 T 15-10-2018 NJ56_06260 e3a93d8fadcd5d0bc4775838641dbb15 289 Gene3D G3DSA:1.10.287.80 6 285 4.1E-111 T 15-10-2018 NJ56_06260 e3a93d8fadcd5d0bc4775838641dbb15 289 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 289 36.249 T 15-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06260 e3a93d8fadcd5d0bc4775838641dbb15 289 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 289 4.3E-111 T 15-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06260 e3a93d8fadcd5d0bc4775838641dbb15 289 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 5.2E-38 T 15-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06260 e3a93d8fadcd5d0bc4775838641dbb15 289 PRINTS PR00126 ATP synthase gamma subunit signature 267 288 5.2E-38 T 15-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06260 e3a93d8fadcd5d0bc4775838641dbb15 289 PRINTS PR00126 ATP synthase gamma subunit signature 236 255 5.2E-38 T 15-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06260 e3a93d8fadcd5d0bc4775838641dbb15 289 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 5.2E-38 T 15-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06260 e3a93d8fadcd5d0bc4775838641dbb15 289 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 275 288 - T 15-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_14340 683487bc0b86ff8e68128508948b5c27 667 SUPERFAMILY SSF53328 1 202 6.02E-55 T 15-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_14340 683487bc0b86ff8e68128508948b5c27 667 Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. 1 660 64.191 T 15-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 NJ56_14340 683487bc0b86ff8e68128508948b5c27 667 Pfam PF02911 Formyl transferase, C-terminal domain 203 292 4.2E-18 T 15-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_14340 683487bc0b86ff8e68128508948b5c27 667 PIRSF PIRSF036506 1 660 0.0 T 15-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 NJ56_14340 683487bc0b86ff8e68128508948b5c27 667 SUPERFAMILY SSF50486 205 304 1.05E-24 T 15-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 NJ56_14340 683487bc0b86ff8e68128508948b5c27 667 SUPERFAMILY SSF51735 317 651 9.85E-71 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_14340 683487bc0b86ff8e68128508948b5c27 667 Pfam PF01370 NAD dependent epimerase/dehydratase family 318 566 2.6E-43 T 15-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 NJ56_14340 683487bc0b86ff8e68128508948b5c27 667 Pfam PF00551 Formyl transferase 26 173 5.6E-24 T 15-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_14340 683487bc0b86ff8e68128508948b5c27 667 Gene3D G3DSA:3.40.50.12230 1 304 1.9E-103 T 15-10-2018 NJ56_14340 683487bc0b86ff8e68128508948b5c27 667 Gene3D G3DSA:3.40.50.720 314 659 6.3E-126 T 15-10-2018 NJ56_02745 84204ab16d3aa7387cfcaa350e3561cd 587 Gene3D G3DSA:3.40.710.10 295 475 2.2E-111 T 15-10-2018 NJ56_02745 84204ab16d3aa7387cfcaa350e3561cd 587 SUPERFAMILY SSF56519 62 233 1.83E-44 T 15-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 NJ56_02745 84204ab16d3aa7387cfcaa350e3561cd 587 Gene3D G3DSA:3.30.450.330 236 549 2.2E-111 T 15-10-2018 NJ56_02745 84204ab16d3aa7387cfcaa350e3561cd 587 Gene3D G3DSA:3.90.1310.30 58 234 9.1E-44 T 15-10-2018 NJ56_02745 84204ab16d3aa7387cfcaa350e3561cd 587 Pfam PF00905 Penicillin binding protein transpeptidase domain 259 553 3.5E-83 T 15-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 NJ56_02745 84204ab16d3aa7387cfcaa350e3561cd 587 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 18 569 46.111 T 15-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_02745 84204ab16d3aa7387cfcaa350e3561cd 587 SUPERFAMILY SSF56601 234 562 4.14E-86 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_02745 84204ab16d3aa7387cfcaa350e3561cd 587 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 219 1.2E-17 T 15-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 NJ56_00075 480874d34b645ab3e6f590ccd5dab0c4 327 SMART SM00729 14 218 1.3E-4 T 15-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 NJ56_00075 480874d34b645ab3e6f590ccd5dab0c4 327 Pfam PF04055 Radical SAM superfamily 19 179 5.7E-29 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_00075 480874d34b645ab3e6f590ccd5dab0c4 327 Pfam PF06463 Molybdenum Cofactor Synthesis C 184 310 3.1E-40 T 15-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_00075 480874d34b645ab3e6f590ccd5dab0c4 327 Pfam PF13353 4Fe-4S single cluster domain 23 109 1.2E-5 T 15-10-2018 NJ56_00075 480874d34b645ab3e6f590ccd5dab0c4 327 Gene3D G3DSA:3.20.20.70 1 327 1.4E-84 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_00075 480874d34b645ab3e6f590ccd5dab0c4 327 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 20 31 - T 15-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_00075 480874d34b645ab3e6f590ccd5dab0c4 327 SUPERFAMILY SSF102114 5 303 9.55E-71 T 15-10-2018 NJ56_00075 480874d34b645ab3e6f590ccd5dab0c4 327 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 5 327 38.195 T 15-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_00075 480874d34b645ab3e6f590ccd5dab0c4 327 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 5 327 6.8E-105 T 15-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 33 275 4.2E-94 T 15-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 553 804 1.0E-98 T 15-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 SUPERFAMILY SSF81301 13 286 4.41E-90 T 15-10-2018 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 Gene3D G3DSA:1.20.120.1510 450 561 2.8E-31 T 15-10-2018 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 SUPERFAMILY SSF81593 287 436 1.18E-41 T 15-10-2018 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 SUPERFAMILY SSF81301 525 814 1.99E-89 T 15-10-2018 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 SUPERFAMILY SSF81593 815 943 1.18E-32 T 15-10-2018 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 Gene3D G3DSA:3.30.460.10 111 284 7.8E-67 T 15-10-2018 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 Gene3D G3DSA:3.30.460.100 562 811 1.4E-97 T 15-10-2018 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 Gene3D G3DSA:1.10.4050.10 1 110 1.4E-30 T 15-10-2018 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 Gene3D G3DSA:1.20.120.330 812 944 4.1E-46 T 15-10-2018 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 Pfam PF08335 GlnD PII-uridylyltransferase 297 436 2.8E-43 T 15-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 Pfam PF08335 GlnD PII-uridylyltransferase 825 917 2.0E-9 T 15-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 27 944 19.433 T 15-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 NJ56_08680 7af41aea54304935972f3c8b472b773e 944 Gene3D G3DSA:1.20.120.330 285 440 1.3E-54 T 15-10-2018 NJ56_13970 5fe54b58404b58174c7983a9ed7e53ad 468 Gene3D G3DSA:3.60.120.10 12 463 1.8E-170 T 15-10-2018 IPR005801 ADC synthase GO:0009058 NJ56_13970 5fe54b58404b58174c7983a9ed7e53ad 468 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 117 457 2.5E-121 T 15-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 NJ56_13970 5fe54b58404b58174c7983a9ed7e53ad 468 SUPERFAMILY SSF56322 16 462 5.76E-144 T 15-10-2018 IPR005801 ADC synthase GO:0009058 NJ56_13970 5fe54b58404b58174c7983a9ed7e53ad 468 Pfam PF00425 chorismate binding enzyme 201 454 1.7E-92 T 15-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal NJ56_13970 5fe54b58404b58174c7983a9ed7e53ad 468 PRINTS PR00095 Anthranilate synthase component I signature 316 329 1.8E-16 T 15-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_13970 5fe54b58404b58174c7983a9ed7e53ad 468 PRINTS PR00095 Anthranilate synthase component I signature 411 425 1.8E-16 T 15-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_13970 5fe54b58404b58174c7983a9ed7e53ad 468 PRINTS PR00095 Anthranilate synthase component I signature 396 410 1.8E-16 T 15-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_13970 5fe54b58404b58174c7983a9ed7e53ad 468 PRINTS PR00095 Anthranilate synthase component I signature 302 315 1.8E-16 T 15-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_13970 5fe54b58404b58174c7983a9ed7e53ad 468 Pfam PF04715 Anthranilate synthase component I, N terminal region 28 164 3.0E-25 T 15-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_00620 b00d1c9ea96831d7d7c8fd545bc16496 298 SUPERFAMILY SSF53850 3 270 1.01E-62 T 15-10-2018 NJ56_00620 b00d1c9ea96831d7d7c8fd545bc16496 298 Gene3D G3DSA:3.40.190.10 131 226 1.1E-101 T 15-10-2018 NJ56_00620 b00d1c9ea96831d7d7c8fd545bc16496 298 Gene3D G3DSA:3.40.190.10 27 272 1.1E-101 T 15-10-2018 NJ56_00620 b00d1c9ea96831d7d7c8fd545bc16496 298 SMART SM00062 37 269 1.1E-67 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_00620 b00d1c9ea96831d7d7c8fd545bc16496 298 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 267 1.6E-47 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_17030 83dca6352dd486291995a15f3a35cfa3 73 Gene3D G3DSA:2.40.50.140 2 65 7.4E-27 T 15-10-2018 NJ56_17030 83dca6352dd486291995a15f3a35cfa3 73 SMART SM00357 3 67 3.6E-28 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_17030 83dca6352dd486291995a15f3a35cfa3 73 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 15-10-2018 IPR019844 Cold-shock conserved site NJ56_17030 83dca6352dd486291995a15f3a35cfa3 73 Pfam PF00313 'Cold-shock' DNA-binding domain 3 64 3.7E-29 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_17030 83dca6352dd486291995a15f3a35cfa3 73 SUPERFAMILY SSF50249 1 66 1.95E-23 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_17030 83dca6352dd486291995a15f3a35cfa3 73 PRINTS PR00050 Cold shock protein signature 4 19 5.2E-16 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_17030 83dca6352dd486291995a15f3a35cfa3 73 PRINTS PR00050 Cold shock protein signature 40 58 5.2E-16 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_17030 83dca6352dd486291995a15f3a35cfa3 73 PRINTS PR00050 Cold shock protein signature 25 34 5.2E-16 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_17030 83dca6352dd486291995a15f3a35cfa3 73 PIRSF PIRSF002599 1 73 6.0E-23 T 15-10-2018 IPR012156 Cold shock, CspA GO:0003676 NJ56_17030 83dca6352dd486291995a15f3a35cfa3 73 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 67 1.8E-41 T 15-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 NJ56_15445 3ab7bc87e47eb2c79a16fd1723245c14 333 Pfam PF00005 ABC transporter 40 191 3.0E-31 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_15445 3ab7bc87e47eb2c79a16fd1723245c14 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 328 1.1E-28 T 15-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 NJ56_15445 3ab7bc87e47eb2c79a16fd1723245c14 333 SUPERFAMILY SSF52540 22 263 2.23E-74 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15445 3ab7bc87e47eb2c79a16fd1723245c14 333 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_15445 3ab7bc87e47eb2c79a16fd1723245c14 333 SMART SM00382 48 241 3.2E-18 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_15445 3ab7bc87e47eb2c79a16fd1723245c14 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 310 2.6E-18 T 15-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 NJ56_15445 3ab7bc87e47eb2c79a16fd1723245c14 333 Gene3D G3DSA:3.40.50.300 8 332 1.3E-97 T 15-10-2018 NJ56_02515 c4ff30d6243c81af96f97c04c4c04fe9 126 Gene3D G3DSA:2.40.40.20 1 126 3.3E-53 T 15-10-2018 NJ56_02515 c4ff30d6243c81af96f97c04c4c04fe9 126 PIRSF PIRSF006246 1 125 2.9E-52 T 15-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 NJ56_02515 c4ff30d6243c81af96f97c04c4c04fe9 126 Pfam PF02261 Aspartate decarboxylase 1 114 4.3E-47 T 15-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 NJ56_02515 c4ff30d6243c81af96f97c04c4c04fe9 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 69.012 T 15-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 NJ56_02515 c4ff30d6243c81af96f97c04c4c04fe9 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 3.0E-63 T 15-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 NJ56_02515 c4ff30d6243c81af96f97c04c4c04fe9 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 1.4E-59 T 15-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 NJ56_02515 c4ff30d6243c81af96f97c04c4c04fe9 126 SUPERFAMILY SSF50692 1 115 3.73E-46 T 15-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily NJ56_06515 e76d10bfc7237887569bf14d83747927 644 SUPERFAMILY SSF52794 379 469 4.71E-23 T 15-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 NJ56_06515 e76d10bfc7237887569bf14d83747927 644 SUPERFAMILY SSF55804 501 640 2.75E-41 T 15-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 NJ56_06515 e76d10bfc7237887569bf14d83747927 644 Gene3D G3DSA:3.40.50.2300 367 472 2.3E-36 T 15-10-2018 NJ56_06515 e76d10bfc7237887569bf14d83747927 644 Pfam PF02378 Phosphotransferase system, EIIC 18 278 2.5E-19 T 15-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 NJ56_06515 e76d10bfc7237887569bf14d83747927 644 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 544 560 - T 15-10-2018 IPR002178 PTS EIIA type-2 domain NJ56_06515 e76d10bfc7237887569bf14d83747927 644 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 9 345 2.1E-184 T 15-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 NJ56_06515 e76d10bfc7237887569bf14d83747927 644 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 501 639 5.1E-34 T 15-10-2018 IPR002178 PTS EIIA type-2 domain NJ56_06515 e76d10bfc7237887569bf14d83747927 644 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 381 456 3.6E-10 T 15-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 NJ56_06515 e76d10bfc7237887569bf14d83747927 644 Gene3D G3DSA:3.40.930.10 496 642 3.9E-54 T 15-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 NJ56_08410 614c16fd51a5e5370f9a4f927981853e 483 SUPERFAMILY SSF48179 273 480 4.42E-52 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_08410 614c16fd51a5e5370f9a4f927981853e 483 Gene3D G3DSA:3.40.50.720 3 267 3.9E-48 T 15-10-2018 NJ56_08410 614c16fd51a5e5370f9a4f927981853e 483 Gene3D G3DSA:1.10.1040.10 272 483 2.3E-61 T 15-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NJ56_08410 614c16fd51a5e5370f9a4f927981853e 483 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 203 458 1.7E-71 T 15-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 NJ56_08410 614c16fd51a5e5370f9a4f927981853e 483 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 17 172 1.6E-27 T 15-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 NJ56_08410 614c16fd51a5e5370f9a4f927981853e 483 SUPERFAMILY SSF51735 2 264 1.89E-65 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_13705 0b19c9e7f693d86db5ccc3cab9bdd38f 280 Pfam PF12833 Helix-turn-helix domain 195 269 2.6E-15 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_13705 0b19c9e7f693d86db5ccc3cab9bdd38f 280 Pfam PF07883 Cupin domain 25 77 7.6E-8 T 15-10-2018 IPR013096 Cupin 2, conserved barrel NJ56_13705 0b19c9e7f693d86db5ccc3cab9bdd38f 280 SUPERFAMILY SSF46689 221 272 2.11E-11 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_13705 0b19c9e7f693d86db5ccc3cab9bdd38f 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 237 252 3.7E-5 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_13705 0b19c9e7f693d86db5ccc3cab9bdd38f 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 252 268 3.7E-5 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_13705 0b19c9e7f693d86db5ccc3cab9bdd38f 280 SUPERFAMILY SSF51182 13 91 3.11E-12 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_13705 0b19c9e7f693d86db5ccc3cab9bdd38f 280 Gene3D G3DSA:2.60.120.10 3 101 5.8E-10 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_13705 0b19c9e7f693d86db5ccc3cab9bdd38f 280 Gene3D G3DSA:1.10.10.60 169 271 4.6E-19 T 15-10-2018 NJ56_13705 0b19c9e7f693d86db5ccc3cab9bdd38f 280 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 222 264 - T 15-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 NJ56_13705 0b19c9e7f693d86db5ccc3cab9bdd38f 280 SMART SM00342 185 268 5.6E-18 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_15335 74cceef86ae02a9c69cbae4f4625cb44 211 Pfam PF03922 OmpW family 23 211 3.4E-65 T 15-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 NJ56_15335 74cceef86ae02a9c69cbae4f4625cb44 211 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 203 211 - T 15-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 NJ56_15335 74cceef86ae02a9c69cbae4f4625cb44 211 Gene3D G3DSA:2.40.160.20 22 211 1.2E-76 T 15-10-2018 NJ56_15335 74cceef86ae02a9c69cbae4f4625cb44 211 SUPERFAMILY SSF56925 23 211 1.31E-28 T 15-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel NJ56_11415 7216102b80f4be7f6940231d55c11366 310 SUPERFAMILY SSF53335 15 293 7.12E-50 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_11415 7216102b80f4be7f6940231d55c11366 310 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 303 3.9E-100 T 15-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 NJ56_11415 7216102b80f4be7f6940231d55c11366 310 Pfam PF05175 Methyltransferase small domain 132 216 2.6E-16 T 15-10-2018 IPR007848 Methyltransferase small domain GO:0008168 NJ56_11415 7216102b80f4be7f6940231d55c11366 310 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 300 52.729 T 15-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 NJ56_11415 7216102b80f4be7f6940231d55c11366 310 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 15-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NJ56_11415 7216102b80f4be7f6940231d55c11366 310 Gene3D G3DSA:3.40.50.150 109 276 9.4E-45 T 15-10-2018 NJ56_11415 7216102b80f4be7f6940231d55c11366 310 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 1.6E-135 T 15-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 NJ56_11415 7216102b80f4be7f6940231d55c11366 310 PIRSF PIRSF037167 2 307 5.3E-147 T 15-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 NJ56_00715 edabfd72407086bc53fc6fd64f4adda2 372 SMART SM00267 200 371 1.6E-56 T 15-10-2018 IPR000160 GGDEF domain NJ56_00715 edabfd72407086bc53fc6fd64f4adda2 372 SUPERFAMILY SSF55073 216 369 1.65E-43 T 15-10-2018 IPR029787 Nucleotide cyclase NJ56_00715 edabfd72407086bc53fc6fd64f4adda2 372 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 209 371 1.7E-52 T 15-10-2018 IPR000160 GGDEF domain NJ56_00715 edabfd72407086bc53fc6fd64f4adda2 372 Pfam PF00990 Diguanylate cyclase, GGDEF domain 212 367 1.1E-44 T 15-10-2018 IPR000160 GGDEF domain NJ56_00715 edabfd72407086bc53fc6fd64f4adda2 372 Gene3D G3DSA:3.30.70.270 196 371 1.3E-51 T 15-10-2018 NJ56_00715 edabfd72407086bc53fc6fd64f4adda2 372 Pfam PF05230 MASE2 domain 41 128 3.9E-29 T 15-10-2018 IPR007894 MASE2 NJ56_00675 5ef68396a3674e663b42113000855160 631 Gene3D G3DSA:3.30.1390.30 86 161 3.3E-51 T 15-10-2018 NJ56_00675 5ef68396a3674e663b42113000855160 631 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 610 9.9E-239 T 15-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_00675 5ef68396a3674e663b42113000855160 631 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 240 7.5E-47 T 15-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 NJ56_00675 5ef68396a3674e663b42113000855160 631 Gene3D G3DSA:3.90.1310.10 65 248 3.3E-51 T 15-10-2018 NJ56_00675 5ef68396a3674e663b42113000855160 631 Gene3D G3DSA:3.40.710.10 249 619 2.2E-94 T 15-10-2018 NJ56_00675 5ef68396a3674e663b42113000855160 631 SUPERFAMILY SSF56601 255 610 3.82E-92 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_00675 5ef68396a3674e663b42113000855160 631 Pfam PF00905 Penicillin binding protein transpeptidase domain 273 607 4.7E-87 T 15-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 NJ56_00675 5ef68396a3674e663b42113000855160 631 SUPERFAMILY SSF56519 57 254 1.2E-53 T 15-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 NJ56_00675 5ef68396a3674e663b42113000855160 631 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 4 614 53.114 T 15-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_09885 210cd7381f842c2264387d322a0feb04 452 PIRSF PIRSF000850 1 452 1.4E-254 T 15-10-2018 NJ56_09885 210cd7381f842c2264387d322a0feb04 452 Gene3D G3DSA:3.30.870.10 19 448 5.0E-176 T 15-10-2018 NJ56_09885 210cd7381f842c2264387d322a0feb04 452 Pfam PF13091 PLD-like domain 258 405 8.6E-21 T 15-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 NJ56_09885 210cd7381f842c2264387d322a0feb04 452 SUPERFAMILY SSF56024 254 394 6.59E-18 T 15-10-2018 NJ56_09885 210cd7381f842c2264387d322a0feb04 452 SUPERFAMILY SSF56024 11 210 2.17E-27 T 15-10-2018 NJ56_09885 210cd7381f842c2264387d322a0feb04 452 Gene3D G3DSA:3.30.870.10 25 233 5.0E-176 T 15-10-2018 NJ56_09885 210cd7381f842c2264387d322a0feb04 452 SMART SM00155 353 380 4.9E-4 T 15-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 NJ56_09885 210cd7381f842c2264387d322a0feb04 452 SMART SM00155 134 160 0.0035 T 15-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 NJ56_10600 5071f109c5e71d4cce95e9db9af7f07b 398 Gene3D G3DSA:1.10.150.530 12 92 5.4E-30 T 15-10-2018 NJ56_10600 5071f109c5e71d4cce95e9db9af7f07b 398 Pfam PF04055 Radical SAM superfamily 134 303 4.5E-17 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_10600 5071f109c5e71d4cce95e9db9af7f07b 398 Gene3D G3DSA:3.20.20.70 93 363 4.8E-114 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_10600 5071f109c5e71d4cce95e9db9af7f07b 398 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 31 378 74.828 T 15-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 NJ56_10600 5071f109c5e71d4cce95e9db9af7f07b 398 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 29 383 5.7E-171 T 15-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 NJ56_10600 5071f109c5e71d4cce95e9db9af7f07b 398 SUPERFAMILY SSF102114 130 348 1.18E-14 T 15-10-2018 NJ56_10600 5071f109c5e71d4cce95e9db9af7f07b 398 PIRSF PIRSF006004 23 391 8.8E-147 T 15-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 NJ56_01635 40d7f044f3861102e03f99f3bda8cae4 505 Pfam PF03169 OPT oligopeptide transporter protein 2 208 4.6E-10 T 15-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 NJ56_01635 40d7f044f3861102e03f99f3bda8cae4 505 Pfam PF03169 OPT oligopeptide transporter protein 221 500 5.0E-13 T 15-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 NJ56_16610 24cb971d42b4001b31df621228b2b2b0 197 SUPERFAMILY SSF46894 126 191 3.2E-14 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_16610 24cb971d42b4001b31df621228b2b2b0 197 Pfam PF00196 Bacterial regulatory proteins, luxR family 136 186 2.5E-13 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_16610 24cb971d42b4001b31df621228b2b2b0 197 Gene3D G3DSA:1.10.10.10 102 193 6.4E-13 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_16610 24cb971d42b4001b31df621228b2b2b0 197 SMART SM00421 133 190 2.7E-6 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_11475 0de24c4d84cb61f3fee9351fd85aa659 240 ProSitePatterns PS00194 Thioredoxin family active site. 92 110 - T 15-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 NJ56_11475 0de24c4d84cb61f3fee9351fd85aa659 240 SUPERFAMILY SSF52833 68 232 8.87E-38 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_11475 0de24c4d84cb61f3fee9351fd85aa659 240 Gene3D G3DSA:3.40.30.10 69 239 1.1E-42 T 15-10-2018 NJ56_11475 0de24c4d84cb61f3fee9351fd85aa659 240 Pfam PF13462 Thioredoxin 78 232 2.9E-22 T 15-10-2018 IPR012336 Thioredoxin-like fold NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 2.2E-17 T 15-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 SUPERFAMILY SSF50447 205 301 4.71E-31 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 6.7E-14 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 Gene3D G3DSA:2.40.30.10 206 334 7.5E-53 T 15-10-2018 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 1.5E-236 T 15-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 200 2.9E-58 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.7E-33 T 15-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.9E-24 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.9E-24 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.9E-24 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.9E-24 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.9E-24 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 SUPERFAMILY SSF52540 6 219 2.92E-60 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.46 T 15-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 SUPERFAMILY SSF50465 298 393 1.58E-35 T 15-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 Gene3D G3DSA:2.40.30.10 338 393 1.7E-29 T 15-10-2018 NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 15-10-2018 IPR031157 Tr-type G domain, conserved site NJ56_07345 85ac9159fcb2ffde47eeb7bab78b0e9a 394 Gene3D G3DSA:3.40.50.300 1 203 1.1E-69 T 15-10-2018 NJ56_08285 90549cf805b4b42bdfc15f36eb0d48ad 1485 Pfam PF01493 GXGXG motif 1235 1418 2.1E-77 T 15-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 NJ56_08285 90549cf805b4b42bdfc15f36eb0d48ad 1485 SUPERFAMILY SSF69336 1211 1464 7.85E-89 T 15-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 NJ56_08285 90549cf805b4b42bdfc15f36eb0d48ad 1485 Gene3D G3DSA:3.60.20.10 12 544 0.0 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_08285 90549cf805b4b42bdfc15f36eb0d48ad 1485 Pfam PF04898 Glutamate synthase central domain 456 736 2.2E-104 T 15-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 NJ56_08285 90549cf805b4b42bdfc15f36eb0d48ad 1485 Pfam PF01645 Conserved region in glutamate synthase 792 1155 1.1E-157 T 15-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 NJ56_08285 90549cf805b4b42bdfc15f36eb0d48ad 1485 SUPERFAMILY SSF56235 12 428 2.49E-149 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_08285 90549cf805b4b42bdfc15f36eb0d48ad 1485 Pfam PF00310 Glutamine amidotransferases class-II 12 424 7.1E-176 T 15-10-2018 IPR017932 Glutamine amidotransferase type 2 domain NJ56_08285 90549cf805b4b42bdfc15f36eb0d48ad 1485 SUPERFAMILY SSF51395 433 1189 1.63E-251 T 15-10-2018 NJ56_08285 90549cf805b4b42bdfc15f36eb0d48ad 1485 Gene3D G3DSA:3.20.20.70 429 791 0.0 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_08285 90549cf805b4b42bdfc15f36eb0d48ad 1485 Gene3D G3DSA:2.160.20.60 1196 1467 1.7E-103 T 15-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 NJ56_08285 90549cf805b4b42bdfc15f36eb0d48ad 1485 Gene3D G3DSA:3.20.20.70 482 1168 0.0 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_10805 e7763568a7ec501336a24275030b177c 687 SUPERFAMILY SSF56024 315 496 7.22E-55 T 15-10-2018 NJ56_10805 e7763568a7ec501336a24275030b177c 687 Gene3D G3DSA:1.20.58.310 9 109 4.5E-38 T 15-10-2018 NJ56_10805 e7763568a7ec501336a24275030b177c 687 Gene3D G3DSA:3.30.1840.10 110 307 2.1E-75 T 15-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 NJ56_10805 e7763568a7ec501336a24275030b177c 687 Hamap MF_00347 Polyphosphate kinase [ppk]. 4 681 27.197 T 15-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 NJ56_10805 e7763568a7ec501336a24275030b177c 687 Gene3D G3DSA:3.30.870.10 317 499 1.2E-73 T 15-10-2018 NJ56_10805 e7763568a7ec501336a24275030b177c 687 Gene3D G3DSA:3.30.870.10 500 686 3.3E-72 T 15-10-2018 NJ56_10805 e7763568a7ec501336a24275030b177c 687 Pfam PF13090 Polyphosphate kinase C-terminal domain 331 676 8.2E-144 T 15-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 NJ56_10805 e7763568a7ec501336a24275030b177c 687 Pfam PF02503 Polyphosphate kinase middle domain 119 320 5.4E-43 T 15-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 NJ56_10805 e7763568a7ec501336a24275030b177c 687 SUPERFAMILY SSF143724 107 313 5.89E-60 T 15-10-2018 NJ56_10805 e7763568a7ec501336a24275030b177c 687 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 109 1.3E-31 T 15-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 NJ56_10805 e7763568a7ec501336a24275030b177c 687 SUPERFAMILY SSF56024 500 682 1.32E-68 T 15-10-2018 NJ56_10805 e7763568a7ec501336a24275030b177c 687 SUPERFAMILY SSF140356 3 105 1.83E-34 T 15-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 NJ56_10805 e7763568a7ec501336a24275030b177c 687 PIRSF PIRSF015589 1 687 9.2E-242 T 15-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 NJ56_10805 e7763568a7ec501336a24275030b177c 687 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 677 2.9E-256 T 15-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 NJ56_05370 2a6d86d91a651dede51f5b75bbc0b3d5 293 Gene3D G3DSA:3.90.550.10 1 293 5.0E-87 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_05370 2a6d86d91a651dede51f5b75bbc0b3d5 293 Pfam PF00483 Nucleotidyl transferase 2 238 4.1E-71 T 15-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 NJ56_05370 2a6d86d91a651dede51f5b75bbc0b3d5 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 2.1E-159 T 15-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 NJ56_05370 2a6d86d91a651dede51f5b75bbc0b3d5 293 SUPERFAMILY SSF53448 1 286 1.15E-91 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_15650 2204eac097653c7def45a62019d0c7bc 559 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 538 4.6E-38 T 15-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NJ56_15650 2204eac097653c7def45a62019d0c7bc 559 SUPERFAMILY SSF52467 193 355 8.39E-36 T 15-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily NJ56_15650 2204eac097653c7def45a62019d0c7bc 559 SUPERFAMILY SSF52518 371 552 1.57E-51 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_15650 2204eac097653c7def45a62019d0c7bc 559 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 331 2.6E-28 T 15-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 NJ56_15650 2204eac097653c7def45a62019d0c7bc 559 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 13 178 9.7E-49 T 15-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 NJ56_15650 2204eac097653c7def45a62019d0c7bc 559 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 430 449 - T 15-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 NJ56_15650 2204eac097653c7def45a62019d0c7bc 559 TIGRFAM TIGR02418 acolac_catab: acetolactate synthase, catabolic 13 551 2.2E-259 T 15-10-2018 IPR012782 Acetolactate synthase, catabolic GO:0000287|GO:0003984|GO:0030976|GO:0034077 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 NJ56_15650 2204eac097653c7def45a62019d0c7bc 559 Gene3D G3DSA:3.40.50.1220 190 359 7.6E-37 T 15-10-2018 NJ56_15650 2204eac097653c7def45a62019d0c7bc 559 Gene3D G3DSA:3.40.50.970 2 187 3.7E-64 T 15-10-2018 NJ56_15650 2204eac097653c7def45a62019d0c7bc 559 Gene3D G3DSA:3.40.50.970 366 559 4.9E-56 T 15-10-2018 NJ56_15650 2204eac097653c7def45a62019d0c7bc 559 SUPERFAMILY SSF52518 4 183 9.68E-47 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_00765 f7845d506645e8eb097e8a94cd46540d 212 Gene3D G3DSA:1.10.357.10 80 204 1.6E-15 T 15-10-2018 NJ56_00765 f7845d506645e8eb097e8a94cd46540d 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 63 2.0E-12 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_00765 f7845d506645e8eb097e8a94cd46540d 212 SUPERFAMILY SSF46689 9 81 1.65E-16 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_00765 f7845d506645e8eb097e8a94cd46540d 212 Gene3D G3DSA:1.10.10.60 5 73 6.7E-25 T 15-10-2018 NJ56_00765 f7845d506645e8eb097e8a94cd46540d 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 9.1E-5 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_00765 f7845d506645e8eb097e8a94cd46540d 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 9.1E-5 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_00765 f7845d506645e8eb097e8a94cd46540d 212 SUPERFAMILY SSF48498 89 201 8.16E-16 T 15-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NJ56_09720 9c1c1ee263903ba290e61efb83a613d3 451 SUPERFAMILY SSF50156 86 193 5.13E-12 T 15-10-2018 IPR036034 PDZ superfamily GO:0005515 NJ56_09720 9c1c1ee263903ba290e61efb83a613d3 451 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 223 258 1.0E-6 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_09720 9c1c1ee263903ba290e61efb83a613d3 451 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 450 2.0E-159 T 15-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 NJ56_09720 9c1c1ee263903ba290e61efb83a613d3 451 Gene3D G3DSA:2.30.42.10 221 310 6.7E-20 T 15-10-2018 NJ56_09720 9c1c1ee263903ba290e61efb83a613d3 451 Gene3D G3DSA:2.30.42.10 127 220 1.6E-31 T 15-10-2018 NJ56_09720 9c1c1ee263903ba290e61efb83a613d3 451 Pfam PF02163 Peptidase family M50 10 439 6.5E-88 T 15-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 NJ56_09720 9c1c1ee263903ba290e61efb83a613d3 451 SUPERFAMILY SSF50156 194 290 5.58E-16 T 15-10-2018 IPR036034 PDZ superfamily GO:0005515 NJ56_09720 9c1c1ee263903ba290e61efb83a613d3 451 SMART SM00228 115 186 0.026 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_09720 9c1c1ee263903ba290e61efb83a613d3 451 SMART SM00228 211 280 1.3E-6 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_10620 b897ab1997f1e62d952a318a4cbb7551 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 421 33.493 T 15-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 NJ56_10620 b897ab1997f1e62d952a318a4cbb7551 424 SUPERFAMILY SSF55681 5 318 1.91E-104 T 15-10-2018 NJ56_10620 b897ab1997f1e62d952a318a4cbb7551 424 Gene3D G3DSA:3.40.50.800 326 423 2.3E-25 T 15-10-2018 IPR036621 Anticodon-binding domain superfamily NJ56_10620 b897ab1997f1e62d952a318a4cbb7551 424 Pfam PF03129 Anticodon binding domain 340 419 1.5E-10 T 15-10-2018 IPR004154 Anticodon-binding NJ56_10620 b897ab1997f1e62d952a318a4cbb7551 424 Pfam PF13393 Histidyl-tRNA synthetase 10 312 8.8E-47 T 15-10-2018 NJ56_10620 b897ab1997f1e62d952a318a4cbb7551 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 411 7.2E-157 T 15-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 NJ56_10620 b897ab1997f1e62d952a318a4cbb7551 424 PIRSF PIRSF001549 2 423 2.9E-128 T 15-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 NJ56_10620 b897ab1997f1e62d952a318a4cbb7551 424 SUPERFAMILY SSF52954 329 423 5.07E-24 T 15-10-2018 NJ56_10620 b897ab1997f1e62d952a318a4cbb7551 424 Gene3D G3DSA:3.30.930.10 2 322 2.5E-118 T 15-10-2018 NJ56_12885 c7e370c21f973a545242e0f3a8a8c1bd 179 Gene3D G3DSA:2.60.40.1090 34 178 5.4E-35 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_12885 c7e370c21f973a545242e0f3a8a8c1bd 179 SUPERFAMILY SSF49401 34 179 9.94E-37 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_12885 c7e370c21f973a545242e0f3a8a8c1bd 179 Pfam PF00419 Fimbrial protein 37 179 8.8E-15 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_06330 5d3a177dc240c9c684505a862777b776 442 Pfam PF00860 Permease family 29 402 6.1E-45 T 15-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 NJ56_06330 5d3a177dc240c9c684505a862777b776 442 PIRSF PIRSF005353 3 442 5.9E-179 T 15-10-2018 IPR026033 Purine permease PbuG-like NJ56_11330 10f14f4dab5d171a208604dae8f70dee 208 SUPERFAMILY SSF52540 2 188 2.56E-42 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_11330 10f14f4dab5d171a208604dae8f70dee 208 SMART SM00382 26 206 5.2E-6 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_11330 10f14f4dab5d171a208604dae8f70dee 208 Pfam PF00005 ABC transporter 18 157 4.9E-29 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_11330 10f14f4dab5d171a208604dae8f70dee 208 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_11330 10f14f4dab5d171a208604dae8f70dee 208 Gene3D G3DSA:3.40.50.300 1 194 5.2E-44 T 15-10-2018 NJ56_11330 10f14f4dab5d171a208604dae8f70dee 208 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 201 7.6E-80 T 15-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 NJ56_14185 646b73245b97b3f9cb2d2c0ef86ba400 281 Pfam PF00950 ABC 3 transport family 1 252 3.1E-96 T 15-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 NJ56_14185 646b73245b97b3f9cb2d2c0ef86ba400 281 SUPERFAMILY SSF81345 1 250 2.62E-44 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_14185 646b73245b97b3f9cb2d2c0ef86ba400 281 Gene3D G3DSA:1.10.3470.10 23 256 4.8E-10 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_02750 f1c3f16664b781249d90cbf623821cff 106 Pfam PF04999 Cell division protein FtsL 11 104 6.1E-34 T 15-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 NJ56_02750 f1c3f16664b781249d90cbf623821cff 106 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 22 103 9.7E-28 T 15-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 NJ56_02750 f1c3f16664b781249d90cbf623821cff 106 Hamap MF_00910 Cell division protein FtsL [ftsL]. 20 103 17.241 T 15-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 NJ56_09850 967281e0721cb67f81d9f42062582efc 343 Gene3D G3DSA:3.30.70.260 233 343 1.1E-37 T 15-10-2018 NJ56_09850 967281e0721cb67f81d9f42062582efc 343 SUPERFAMILY SSF55021 248 343 3.32E-25 T 15-10-2018 NJ56_09850 967281e0721cb67f81d9f42062582efc 343 Pfam PF09383 NIL domain 268 339 6.7E-19 T 15-10-2018 IPR018449 NIL domain NJ56_09850 967281e0721cb67f81d9f42062582efc 343 SUPERFAMILY SSF52540 1 240 1.86E-84 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09850 967281e0721cb67f81d9f42062582efc 343 SMART SM00382 30 217 1.4E-15 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_09850 967281e0721cb67f81d9f42062582efc 343 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_09850 967281e0721cb67f81d9f42062582efc 343 Pfam PF00005 ABC transporter 21 169 6.4E-35 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_09850 967281e0721cb67f81d9f42062582efc 343 Gene3D G3DSA:3.40.50.300 1 232 1.2E-77 T 15-10-2018 NJ56_09850 967281e0721cb67f81d9f42062582efc 343 SMART SM00930 265 340 1.2E-24 T 15-10-2018 IPR018449 NIL domain NJ56_09850 967281e0721cb67f81d9f42062582efc 343 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 4.2E-195 T 15-10-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 NJ56_08090 a44064bf05a87f97eb6a709b65290aca 136 Hamap MF_00954 Regulator of nucleoside diphosphate kinase [rnk]. 1 136 43.732 T 15-10-2018 IPR028625 Regulator of nucleoside diphosphate kinase GO:0070063 NJ56_08090 a44064bf05a87f97eb6a709b65290aca 136 PIRSF PIRSF006092 26 128 4.4E-24 T 15-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 NJ56_08090 a44064bf05a87f97eb6a709b65290aca 136 Gene3D G3DSA:1.10.286.20 1 44 1.4E-24 T 15-10-2018 NJ56_08090 a44064bf05a87f97eb6a709b65290aca 136 SUPERFAMILY SSF54534 49 126 2.35E-18 T 15-10-2018 NJ56_08090 a44064bf05a87f97eb6a709b65290aca 136 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 124 3.2E-18 T 15-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 NJ56_08090 a44064bf05a87f97eb6a709b65290aca 136 Gene3D G3DSA:3.10.50.30 45 136 2.4E-31 T 15-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 NJ56_08090 a44064bf05a87f97eb6a709b65290aca 136 Pfam PF14760 Rnk N-terminus 4 43 7.7E-13 T 15-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain NJ56_05100 1df33670d149a16544ae68888064eeaa 317 Pfam PF02687 FtsX-like permease family 218 307 2.4E-6 T 15-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 NJ56_05100 1df33670d149a16544ae68888064eeaa 317 TIGRFAM TIGR00439 ftsX: putative protein insertion permease FtsX 19 316 1.8E-129 T 15-10-2018 IPR004513 Cell division protein FtsX GO:0016021 NJ56_05100 1df33670d149a16544ae68888064eeaa 317 PIRSF PIRSF003097 16 313 3.6E-95 T 15-10-2018 IPR004513 Cell division protein FtsX GO:0016021 NJ56_14570 af10baa14470bd570fbed809c2346807 200 Pfam PF16925 Bacterial transcriptional repressor C-terminal 87 187 1.1E-11 T 15-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal NJ56_14570 af10baa14470bd570fbed809c2346807 200 SUPERFAMILY SSF48498 85 196 2.6E-22 T 15-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NJ56_14570 af10baa14470bd570fbed809c2346807 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 60 3.5E-8 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_14570 af10baa14470bd570fbed809c2346807 200 Gene3D G3DSA:1.10.357.10 3 199 7.5E-60 T 15-10-2018 NJ56_14570 af10baa14470bd570fbed809c2346807 200 SUPERFAMILY SSF46689 8 80 6.67E-15 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_01880 ce353a3bffc50cb719fc5bc5b88509bc 373 Gene3D G3DSA:1.20.59.10 1 80 9.8E-16 T 15-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_01880 ce353a3bffc50cb719fc5bc5b88509bc 373 Gene3D G3DSA:1.10.3660.10 248 373 1.5E-51 T 15-10-2018 NJ56_01880 ce353a3bffc50cb719fc5bc5b88509bc 373 SUPERFAMILY SSF48600 4 88 3.85E-23 T 15-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_01880 ce353a3bffc50cb719fc5bc5b88509bc 373 PIRSF PIRSF001499 1 373 1.0E-181 T 15-10-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 NJ56_01880 ce353a3bffc50cb719fc5bc5b88509bc 373 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 2.5E-44 T 15-10-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 NJ56_01880 ce353a3bffc50cb719fc5bc5b88509bc 373 Pfam PF02153 Prephenate dehydrogenase 141 344 1.7E-31 T 15-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 NJ56_01880 ce353a3bffc50cb719fc5bc5b88509bc 373 Gene3D G3DSA:3.40.50.720 81 246 2.3E-44 T 15-10-2018 NJ56_01880 ce353a3bffc50cb719fc5bc5b88509bc 373 SUPERFAMILY SSF51735 91 238 1.1E-38 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_01880 ce353a3bffc50cb719fc5bc5b88509bc 373 Pfam PF01817 Chorismate mutase type II 9 86 1.3E-19 T 15-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_01880 ce353a3bffc50cb719fc5bc5b88509bc 373 SUPERFAMILY SSF48179 241 366 1.36E-41 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_01880 ce353a3bffc50cb719fc5bc5b88509bc 373 SMART SM00830 9 89 2.7E-30 T 15-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PIRSF PIRSF000350 2 467 1.6E-56 T 15-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 Gene3D G3DSA:1.10.287.990 37 107 1.6E-93 T 15-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 Gene3D G3DSA:3.50.50.60 7 329 1.6E-93 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 SUPERFAMILY SSF55424 348 466 5.67E-25 T 15-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 SUPERFAMILY SSF51905 1 365 5.71E-41 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 326 1.2E-39 T 15-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 Gene3D G3DSA:3.30.390.30 346 469 2.8E-42 T 15-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 8.7E-18 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 8.7E-18 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 135 153 8.7E-18 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 8.7E-18 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 174 192 8.7E-18 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 349 458 3.7E-17 T 15-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 Gene3D G3DSA:3.50.50.60 147 268 1.6E-93 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 5.6E-40 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 426 5.6E-40 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 5.6E-40 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 138 147 5.6E-40 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 5.6E-40 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 5.6E-40 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 5.6E-40 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 5.6E-40 T 15-10-2018 NJ56_05575 9dffca94e55d788a69ca2707adf65854 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 453 5.6E-40 T 15-10-2018 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 15 32 - T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 Gene3D G3DSA:1.10.10.1100 421 493 2.7E-17 T 15-10-2018 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 353 363 - T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 SUPERFAMILY SSF51905 10 323 1.14E-44 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_05170 c89644f94bb0342113fa7918948d7579 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 23 33 5.8E-23 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 348 360 5.8E-23 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 83 95 5.8E-23 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 10 22 5.8E-23 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 312 318 5.8E-23 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 39 51 5.8E-23 T 15-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 Gene3D G3DSA:3.50.50.60 11 367 1.7E-79 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_05170 c89644f94bb0342113fa7918948d7579 551 Pfam PF01266 FAD dependent oxidoreductase 11 360 1.6E-55 T 15-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 Gene3D G3DSA:3.30.9.10 87 319 1.7E-79 T 15-10-2018 NJ56_05170 c89644f94bb0342113fa7918948d7579 551 Pfam PF04324 BFD-like [2Fe-2S] binding domain 433 485 1.1E-9 T 15-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain NJ56_05170 c89644f94bb0342113fa7918948d7579 551 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 11 539 1.6E-268 T 15-10-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 NJ56_07725 39858f5125a5ec2270104521bc57f752 697 SMART SM00382 487 619 2.1E-10 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_07725 39858f5125a5ec2270104521bc57f752 697 SUPERFAMILY SSF52540 443 686 5.88E-41 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_07725 39858f5125a5ec2270104521bc57f752 697 Gene3D G3DSA:1.10.8.60 632 695 2.0E-5 T 15-10-2018 NJ56_07725 39858f5125a5ec2270104521bc57f752 697 Gene3D G3DSA:3.40.50.300 426 631 7.2E-40 T 15-10-2018 NJ56_07725 39858f5125a5ec2270104521bc57f752 697 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 492 615 2.0E-25 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_15730 1d2ffef81ff5e62ade4a752dc86103be 92 Hamap MF_01866 Protein YcgL [ycgL]. 1 88 27.261 T 15-10-2018 IPR027354 YcgL domain NJ56_15730 1d2ffef81ff5e62ade4a752dc86103be 92 SUPERFAMILY SSF160191 1 86 5.89E-38 T 15-10-2018 IPR038068 YcgL-like superfamily NJ56_15730 1d2ffef81ff5e62ade4a752dc86103be 92 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 83 2.0E-35 T 15-10-2018 IPR027354 YcgL domain NJ56_15730 1d2ffef81ff5e62ade4a752dc86103be 92 Pfam PF05166 YcgL domain 3 75 2.0E-33 T 15-10-2018 IPR027354 YcgL domain NJ56_15730 1d2ffef81ff5e62ade4a752dc86103be 92 Gene3D G3DSA:3.10.510.20 1 74 1.9E-31 T 15-10-2018 IPR038068 YcgL-like superfamily NJ56_17375 58c4bdffefd2553446cce5322c0befdc 331 SUPERFAMILY SSF53822 24 329 3.34E-83 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_17375 58c4bdffefd2553446cce5322c0befdc 331 Pfam PF13407 Periplasmic binding protein domain 27 299 4.3E-65 T 15-10-2018 IPR025997 Periplasmic binding protein NJ56_17375 58c4bdffefd2553446cce5322c0befdc 331 Gene3D G3DSA:3.40.50.2300 27 301 7.3E-121 T 15-10-2018 NJ56_17375 58c4bdffefd2553446cce5322c0befdc 331 Gene3D G3DSA:3.40.50.2300 133 279 7.3E-121 T 15-10-2018 NJ56_07670 afe440f97a42c2b1d571743ee9755dde 409 Pfam PF17482 Phage tail sheath C-terminal domain 293 398 1.6E-7 T 15-10-2018 IPR020287 Tail sheath protein, C-terminal domain NJ56_07410 e6c739b6fe1cd9cf502f78fb1db9f102 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 15-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07410 e6c739b6fe1cd9cf502f78fb1db9f102 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 25.204 T 15-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07410 e6c739b6fe1cd9cf502f78fb1db9f102 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 76 7.0E-36 T 15-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07410 e6c739b6fe1cd9cf502f78fb1db9f102 84 Gene3D G3DSA:2.40.50.140 1 84 6.7E-40 T 15-10-2018 NJ56_07410 e6c739b6fe1cd9cf502f78fb1db9f102 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 6.5E-38 T 15-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07410 e6c739b6fe1cd9cf502f78fb1db9f102 84 SUPERFAMILY SSF50249 5 82 2.66E-33 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_07410 e6c739b6fe1cd9cf502f78fb1db9f102 84 Pfam PF00366 Ribosomal protein S17 10 76 1.6E-33 T 15-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07410 e6c739b6fe1cd9cf502f78fb1db9f102 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 9.2E-14 T 15-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07410 e6c739b6fe1cd9cf502f78fb1db9f102 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 9.2E-14 T 15-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07410 e6c739b6fe1cd9cf502f78fb1db9f102 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 9.2E-14 T 15-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 Gene3D G3DSA:3.30.559.10 373 621 2.0E-100 T 15-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 Gene3D G3DSA:2.40.50.100 102 181 5.6E-20 T 15-10-2018 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 Gene3D G3DSA:2.40.50.100 1 78 2.4E-20 T 15-10-2018 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 Gene3D G3DSA:2.40.50.100 199 278 5.8E-21 T 15-10-2018 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 126 155 - T 15-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 SUPERFAMILY SSF47005 311 356 2.88E-13 T 15-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 Pfam PF02817 e3 binding domain 317 352 5.2E-15 T 15-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 SUPERFAMILY SSF51230 1 89 1.96E-21 T 15-10-2018 IPR011053 Single hybrid motif NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 178 621 3.8E-217 T 15-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 SUPERFAMILY SSF52777 379 620 3.16E-80 T 15-10-2018 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 15-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 Gene3D G3DSA:4.10.320.10 317 362 4.4E-22 T 15-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 SUPERFAMILY SSF51230 200 287 3.93E-22 T 15-10-2018 IPR011053 Single hybrid motif NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 Pfam PF00364 Biotin-requiring enzyme 4 73 7.0E-21 T 15-10-2018 IPR000089 Biotin/lipoyl attachment NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 Pfam PF00364 Biotin-requiring enzyme 105 174 1.0E-20 T 15-10-2018 IPR000089 Biotin/lipoyl attachment NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 Pfam PF00364 Biotin-requiring enzyme 202 271 8.0E-22 T 15-10-2018 IPR000089 Biotin/lipoyl attachment NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 223 252 - T 15-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 390 620 4.9E-80 T 15-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 NJ56_02590 31a702dcf1b16c24f66ff6fbd70aa664 621 SUPERFAMILY SSF51230 103 194 8.77E-22 T 15-10-2018 IPR011053 Single hybrid motif NJ56_03585 d81605a97f541211d9b895b879828ff5 418 Gene3D G3DSA:1.10.443.10 212 392 2.0E-13 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_03585 d81605a97f541211d9b895b879828ff5 418 Pfam PF13356 Arm DNA-binding domain 3 87 6.8E-20 T 15-10-2018 IPR025166 Integrase, DNA-binding domain NJ56_03585 d81605a97f541211d9b895b879828ff5 418 ProSitePatterns PS00018 EF-hand calcium-binding domain. 401 413 - T 15-10-2018 IPR018247 EF-Hand 1, calcium-binding site NJ56_03585 d81605a97f541211d9b895b879828ff5 418 Pfam PF00589 Phage integrase family 228 383 2.8E-16 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_03585 d81605a97f541211d9b895b879828ff5 418 Gene3D G3DSA:1.10.150.130 103 179 6.3E-24 T 15-10-2018 IPR010998 Integrase/recombinase, N-terminal NJ56_03585 d81605a97f541211d9b895b879828ff5 418 Gene3D G3DSA:3.30.160.390 1 102 1.1E-37 T 15-10-2018 IPR038488 Integrase, DNA-binding domain superfamily NJ56_03585 d81605a97f541211d9b895b879828ff5 418 SUPERFAMILY SSF56349 98 387 1.48E-47 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_16315 57807d67bf6d5463e146fe9532cf0d26 470 PIRSF PIRSF002457 3 470 3.2E-135 T 15-10-2018 IPR030676 Citrate carrier CitT-related NJ56_16315 57807d67bf6d5463e146fe9532cf0d26 470 Pfam PF00939 Sodium:sulfate symporter transmembrane region 12 470 3.0E-141 T 15-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 NJ56_16315 57807d67bf6d5463e146fe9532cf0d26 470 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 25 464 9.4E-117 T 15-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 NJ56_16875 c11fee6a1805206dbd0694311c6b85af 252 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 46.095 T 15-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 NJ56_16875 c11fee6a1805206dbd0694311c6b85af 252 Pfam PF02348 Cytidylyltransferase 4 221 2.2E-69 T 15-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 NJ56_16875 c11fee6a1805206dbd0694311c6b85af 252 Gene3D G3DSA:3.90.550.10 1 250 7.4E-100 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_16875 c11fee6a1805206dbd0694311c6b85af 252 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 241 1.5E-123 T 15-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 NJ56_16875 c11fee6a1805206dbd0694311c6b85af 252 SUPERFAMILY SSF53448 3 247 1.17E-68 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_16075 f06e83e84473ccff175be8d412752a67 708 SMART SM00382 402 546 2.0E-8 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_16075 f06e83e84473ccff175be8d412752a67 708 SUPERFAMILY SSF55781 7 175 2.4E-13 T 15-10-2018 NJ56_16075 f06e83e84473ccff175be8d412752a67 708 Gene3D G3DSA:1.10.10.60 641 699 1.3E-8 T 15-10-2018 NJ56_16075 f06e83e84473ccff175be8d412752a67 708 Pfam PF13492 GAF domain 199 347 1.5E-9 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_16075 f06e83e84473ccff175be8d412752a67 708 Gene3D G3DSA:3.30.450.40 6 169 2.0E-13 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_16075 f06e83e84473ccff175be8d412752a67 708 SUPERFAMILY SSF52540 381 620 2.78E-71 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16075 f06e83e84473ccff175be8d412752a67 708 Gene3D G3DSA:3.40.50.300 369 552 4.7E-66 T 15-10-2018 NJ56_16075 f06e83e84473ccff175be8d412752a67 708 Gene3D G3DSA:1.10.8.60 553 619 2.3E-22 T 15-10-2018 NJ56_16075 f06e83e84473ccff175be8d412752a67 708 SUPERFAMILY SSF46689 595 696 4.48E-5 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_16075 f06e83e84473ccff175be8d412752a67 708 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 595 604 - T 15-10-2018 IPR025944 Sigma-54 interaction domain, conserved site NJ56_16075 f06e83e84473ccff175be8d412752a67 708 SUPERFAMILY SSF55781 181 362 1.59E-21 T 15-10-2018 NJ56_16075 f06e83e84473ccff175be8d412752a67 708 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 406 419 - T 15-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NJ56_16075 f06e83e84473ccff175be8d412752a67 708 Pfam PF00158 Sigma-54 interaction domain 382 548 2.4E-70 T 15-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NJ56_16075 f06e83e84473ccff175be8d412752a67 708 SMART SM00065 199 355 4.0E-20 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_16075 f06e83e84473ccff175be8d412752a67 708 SMART SM00065 21 171 3.1E-7 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_16075 f06e83e84473ccff175be8d412752a67 708 Gene3D G3DSA:3.30.450.40 183 356 3.1E-25 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_16235 ce1e0ead013be3fb2698af2571b23dd9 479 Gene3D G3DSA:3.40.640.10 141 359 3.2E-95 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_16235 ce1e0ead013be3fb2698af2571b23dd9 479 Gene3D G3DSA:1.10.10.10 1 97 6.4E-20 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_16235 ce1e0ead013be3fb2698af2571b23dd9 479 Pfam PF00155 Aminotransferase class I and II 145 446 1.0E-28 T 15-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NJ56_16235 ce1e0ead013be3fb2698af2571b23dd9 479 SUPERFAMILY SSF46785 1 70 1.24E-18 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_16235 ce1e0ead013be3fb2698af2571b23dd9 479 SMART SM00345 7 66 7.1E-14 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_16235 ce1e0ead013be3fb2698af2571b23dd9 479 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 4.8E-13 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_16235 ce1e0ead013be3fb2698af2571b23dd9 479 SUPERFAMILY SSF53383 93 465 5.23E-90 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_16235 ce1e0ead013be3fb2698af2571b23dd9 479 Gene3D G3DSA:3.90.1150.10 98 464 3.2E-95 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_11410 bd842d7e0b9c5ba87cef0a5a95ec2962 176 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 174 39.198 T 15-10-2018 IPR022990 Uncharacterised protein family UPF0115 NJ56_11410 bd842d7e0b9c5ba87cef0a5a95ec2962 176 SMART SM00463 95 173 6.5E-20 T 15-10-2018 IPR002625 Smr domain NJ56_11410 bd842d7e0b9c5ba87cef0a5a95ec2962 176 Pfam PF01713 Smr domain 98 172 2.1E-19 T 15-10-2018 IPR002625 Smr domain NJ56_11410 bd842d7e0b9c5ba87cef0a5a95ec2962 176 Gene3D G3DSA:3.30.1370.110 50 176 1.4E-30 T 15-10-2018 NJ56_11410 bd842d7e0b9c5ba87cef0a5a95ec2962 176 SUPERFAMILY SSF160443 95 171 1.57E-10 T 15-10-2018 IPR036063 Smr domain superfamily NJ56_10005 df301dedbee2e7a9ac2827e1a5ffee31 381 Gene3D G3DSA:3.20.20.70 3 380 5.2E-127 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_10005 df301dedbee2e7a9ac2827e1a5ffee31 381 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 15-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 NJ56_10005 df301dedbee2e7a9ac2827e1a5ffee31 381 PIRSF PIRSF000138 2 379 1.1E-122 T 15-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 NJ56_10005 df301dedbee2e7a9ac2827e1a5ffee31 381 SUPERFAMILY SSF51395 7 371 3.36E-99 T 15-10-2018 NJ56_10005 df301dedbee2e7a9ac2827e1a5ffee31 381 Pfam PF01070 FMN-dependent dehydrogenase 13 374 2.3E-127 T 15-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 NJ56_10005 df301dedbee2e7a9ac2827e1a5ffee31 381 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 73.343 T 15-10-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 NJ56_01205 cc31c4f6f9d9808ccf4e3d8eb0c93bdd 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 110 313 1.5E-19 T 15-10-2018 IPR005064 Bordetella uptake gene GO:0030288 NJ56_01205 cc31c4f6f9d9808ccf4e3d8eb0c93bdd 326 SUPERFAMILY SSF53850 64 241 3.04E-8 T 15-10-2018 NJ56_01205 cc31c4f6f9d9808ccf4e3d8eb0c93bdd 326 PIRSF PIRSF017082 4 326 1.6E-78 T 15-10-2018 IPR005064 Bordetella uptake gene GO:0030288 NJ56_01205 cc31c4f6f9d9808ccf4e3d8eb0c93bdd 326 Gene3D G3DSA:3.40.190.10 125 252 3.7E-56 T 15-10-2018 NJ56_01205 cc31c4f6f9d9808ccf4e3d8eb0c93bdd 326 Gene3D G3DSA:3.40.190.150 26 316 3.7E-56 T 15-10-2018 NJ56_16590 0cf4f7e6d23bb52d9ad11b4ead48548a 348 Pfam PF01979 Amidohydrolase family 15 307 6.9E-19 T 15-10-2018 IPR006680 Amidohydrolase-related GO:0016787 NJ56_16590 0cf4f7e6d23bb52d9ad11b4ead48548a 348 PIRSF PIRSF001237 4 348 1.1E-140 T 15-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_16590 0cf4f7e6d23bb52d9ad11b4ead48548a 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 8 347 4.3E-149 T 15-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_16590 0cf4f7e6d23bb52d9ad11b4ead48548a 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 249 260 - T 15-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_16590 0cf4f7e6d23bb52d9ad11b4ead48548a 348 Gene3D G3DSA:3.20.20.140 6 348 7.5E-103 T 15-10-2018 NJ56_16590 0cf4f7e6d23bb52d9ad11b4ead48548a 348 Hamap MF_00219 Dihydroorotase [pyrC]. 6 347 46.493 T 15-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_16590 0cf4f7e6d23bb52d9ad11b4ead48548a 348 SUPERFAMILY SSF51556 6 347 2.37E-143 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_00065 36666b680c903f358e15275031fdc323 81 Gene3D G3DSA:3.10.20.30 1 81 9.1E-28 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_00065 36666b680c903f358e15275031fdc323 81 SUPERFAMILY SSF54285 1 81 4.67E-24 T 15-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp NJ56_00065 36666b680c903f358e15275031fdc323 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 1.3E-24 T 15-10-2018 NJ56_00065 36666b680c903f358e15275031fdc323 81 Pfam PF02597 ThiS family 4 81 3.6E-22 T 15-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 NJ56_11795 4c425eb9302be9c79a8e13c5009b26a8 308 SUPERFAMILY SSF53448 2 255 4.1E-37 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_11795 4c425eb9302be9c79a8e13c5009b26a8 308 Pfam PF00535 Glycosyl transferase family 2 4 166 5.4E-28 T 15-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 NJ56_11795 4c425eb9302be9c79a8e13c5009b26a8 308 Gene3D G3DSA:3.90.550.10 2 203 3.0E-32 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_01310 990f2bb60143684899de97fe40518c9f 112 Gene3D G3DSA:3.30.70.120 1 112 7.1E-45 T 15-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal NJ56_01310 990f2bb60143684899de97fe40518c9f 112 SUPERFAMILY SSF54913 1 112 1.18E-42 T 15-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta NJ56_01310 990f2bb60143684899de97fe40518c9f 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.1E-41 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_01310 990f2bb60143684899de97fe40518c9f 112 PRINTS PR00340 P-II protein signature 83 103 3.2E-41 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_01310 990f2bb60143684899de97fe40518c9f 112 PRINTS PR00340 P-II protein signature 2 17 3.2E-41 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_01310 990f2bb60143684899de97fe40518c9f 112 PRINTS PR00340 P-II protein signature 52 75 3.2E-41 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_01310 990f2bb60143684899de97fe40518c9f 112 PRINTS PR00340 P-II protein signature 23 41 3.2E-41 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_01310 990f2bb60143684899de97fe40518c9f 112 SMART SM00938 4 105 1.8E-61 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_01310 990f2bb60143684899de97fe40518c9f 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 15-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 NJ56_01310 990f2bb60143684899de97fe40518c9f 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 15-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 NJ56_01310 990f2bb60143684899de97fe40518c9f 112 PIRSF PIRSF039144 1 112 3.8E-53 T 15-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NJ56_02035 73a51d28ca0336c55ebb48d9f8157973 180 Gene3D G3DSA:2.30.30.830 113 180 1.7E-23 T 15-10-2018 NJ56_02035 73a51d28ca0336c55ebb48d9f8157973 180 Pfam PF11356 Type II secretion system protein C 36 179 2.3E-21 T 15-10-2018 IPR024961 Type II secretion system protein C, N-terminal NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 Gene3D G3DSA:3.40.190.10 31 337 6.0E-140 T 15-10-2018 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 PIRSF PIRSF019574 1 369 1.8E-141 T 15-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 Gene3D G3DSA:3.40.190.10 135 363 6.0E-140 T 15-10-2018 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 SUPERFAMILY SSF53850 28 368 1.67E-102 T 15-10-2018 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 218 237 1.0E-73 T 15-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 268 287 1.0E-73 T 15-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 180 199 1.0E-73 T 15-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 157 171 1.0E-73 T 15-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 93 106 1.0E-73 T 15-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 126 142 1.0E-73 T 15-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 50 71 1.0E-73 T 15-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 77 91 1.0E-73 T 15-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 34 50 1.0E-73 T 15-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 313 339 1.0E-73 T 15-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NJ56_17145 7b71d23bdf898255cc882e9ef614c88a 369 Pfam PF13416 Bacterial extracellular solute-binding protein 46 334 1.1E-32 T 15-10-2018 IPR006059 Bacterial extracellular solute-binding protein NJ56_11550 4ec55ea911a933617fbc068bf2a401ea 190 Gene3D G3DSA:3.40.50.1950 2 190 1.3E-77 T 15-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 NJ56_11550 4ec55ea911a933617fbc068bf2a401ea 190 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 2 188 37.079 T 15-10-2018 IPR004507 Flavin prenyltransferase UbiX-like NJ56_11550 4ec55ea911a933617fbc068bf2a401ea 190 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 3 186 1.3E-69 T 15-10-2018 IPR004507 Flavin prenyltransferase UbiX-like NJ56_11550 4ec55ea911a933617fbc068bf2a401ea 190 SUPERFAMILY SSF52507 2 188 4.32E-59 T 15-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 NJ56_11550 4ec55ea911a933617fbc068bf2a401ea 190 Pfam PF02441 Flavoprotein 2 165 1.1E-22 T 15-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 NJ56_02110 26d8c03f6c911264d2b1df18598679c0 434 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 327 337 - T 15-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 NJ56_02110 26d8c03f6c911264d2b1df18598679c0 434 SMART SM00194 102 388 4.4E-5 T 15-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 NJ56_02110 26d8c03f6c911264d2b1df18598679c0 434 PRINTS PR00700 Protein tyrosine phosphatase signature 324 342 5.7E-5 T 15-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 NJ56_02110 26d8c03f6c911264d2b1df18598679c0 434 PRINTS PR00700 Protein tyrosine phosphatase signature 283 300 5.7E-5 T 15-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 NJ56_02110 26d8c03f6c911264d2b1df18598679c0 434 PRINTS PR00700 Protein tyrosine phosphatase signature 369 379 5.7E-5 T 15-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 NJ56_02110 26d8c03f6c911264d2b1df18598679c0 434 Gene3D G3DSA:3.90.190.10 139 392 8.0E-23 T 15-10-2018 IPR029021 Protein-tyrosine phosphatase-like NJ56_02110 26d8c03f6c911264d2b1df18598679c0 434 Pfam PF00102 Protein-tyrosine phosphatase 198 382 3.1E-14 T 15-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 NJ56_02110 26d8c03f6c911264d2b1df18598679c0 434 SUPERFAMILY SSF52799 161 382 6.12E-19 T 15-10-2018 IPR029021 Protein-tyrosine phosphatase-like NJ56_02110 26d8c03f6c911264d2b1df18598679c0 434 SMART SM00404 284 385 2.1E-4 T 15-10-2018 IPR003595 Protein-tyrosine phosphatase, catalytic NJ56_10495 b36b797ccf6150a267d845314d9890b7 417 PIRSF PIRSF000412 1 417 8.8E-169 T 15-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 NJ56_10495 b36b797ccf6150a267d845314d9890b7 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.43 T 15-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 NJ56_10495 b36b797ccf6150a267d845314d9890b7 417 SUPERFAMILY SSF53383 6 416 3.71E-180 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_10495 b36b797ccf6150a267d845314d9890b7 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 15-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 NJ56_10495 b36b797ccf6150a267d845314d9890b7 417 Pfam PF00464 Serine hydroxymethyltransferase 8 386 2.6E-184 T 15-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 NJ56_10495 b36b797ccf6150a267d845314d9890b7 417 Gene3D G3DSA:3.90.1150.10 10 395 2.9E-182 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_10495 b36b797ccf6150a267d845314d9890b7 417 Gene3D G3DSA:3.40.640.10 37 289 2.9E-182 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_12955 4642b313556fa7d85c2c762de4abfe21 251 Pfam PF00460 Flagella basal body rod protein 5 35 6.4E-10 T 15-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 NJ56_12955 4642b313556fa7d85c2c762de4abfe21 251 SUPERFAMILY SSF117143 77 209 1.09E-18 T 15-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like NJ56_12955 4642b313556fa7d85c2c762de4abfe21 251 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 170 247 1.0E-21 T 15-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain NJ56_12955 4642b313556fa7d85c2c762de4abfe21 251 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 120 1.1E-34 T 15-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G NJ56_14875 ed4aa8f6b05fb6e06463604c80482c2e 125 Gene3D G3DSA:3.10.180.10 6 124 1.5E-35 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_14875 ed4aa8f6b05fb6e06463604c80482c2e 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 121 3.5E-9 T 15-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NJ56_14875 ed4aa8f6b05fb6e06463604c80482c2e 125 SUPERFAMILY SSF54593 2 122 3.99E-23 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_00185 da74ea4feec2d0bed3bb0dbd5a158636 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 2.4E-63 T 15-10-2018 IPR016040 NAD(P)-binding domain NJ56_00185 da74ea4feec2d0bed3bb0dbd5a158636 338 Gene3D G3DSA:3.90.25.10 194 329 1.5E-141 T 15-10-2018 NJ56_00185 da74ea4feec2d0bed3bb0dbd5a158636 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 335 1.1E-142 T 15-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 NJ56_00185 da74ea4feec2d0bed3bb0dbd5a158636 338 SUPERFAMILY SSF51735 1 336 6.26E-99 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_00185 da74ea4feec2d0bed3bb0dbd5a158636 338 Gene3D G3DSA:3.40.50.720 3 274 1.5E-141 T 15-10-2018 NJ56_00210 aac1ff99d39a070fc172b1e19b554f6b 250 PIRSF PIRSF000709 3 116 3.8E-9 T 15-10-2018 NJ56_00210 aac1ff99d39a070fc172b1e19b554f6b 250 PIRSF PIRSF000709 170 241 0.067 T 15-10-2018 NJ56_00210 aac1ff99d39a070fc172b1e19b554f6b 250 Gene3D G3DSA:3.40.50.1240 2 250 4.1E-93 T 15-10-2018 IPR029033 Histidine phosphatase superfamily NJ56_00210 aac1ff99d39a070fc172b1e19b554f6b 250 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 230 46.585 T 15-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 NJ56_00210 aac1ff99d39a070fc172b1e19b554f6b 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 131 226 6.4E-5 T 15-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 NJ56_00210 aac1ff99d39a070fc172b1e19b554f6b 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 125 3.1E-30 T 15-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 NJ56_00210 aac1ff99d39a070fc172b1e19b554f6b 250 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 15-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 NJ56_00210 aac1ff99d39a070fc172b1e19b554f6b 250 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 5 248 3.8E-127 T 15-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 NJ56_00210 aac1ff99d39a070fc172b1e19b554f6b 250 SUPERFAMILY SSF53254 4 247 4.08E-78 T 15-10-2018 IPR029033 Histidine phosphatase superfamily NJ56_00210 aac1ff99d39a070fc172b1e19b554f6b 250 SMART SM00855 5 191 1.6E-27 T 15-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 NJ56_13070 f60a940f01e99921dc9fa0787eba94de 305 SUPERFAMILY SSF54060 64 295 8.24E-52 T 15-10-2018 NJ56_13070 f60a940f01e99921dc9fa0787eba94de 305 Pfam PF01223 DNA/RNA non-specific endonuclease 73 281 1.3E-40 T 15-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 NJ56_13070 f60a940f01e99921dc9fa0787eba94de 305 Gene3D G3DSA:3.40.570.10 59 302 9.4E-78 T 15-10-2018 NJ56_13070 f60a940f01e99921dc9fa0787eba94de 305 SMART SM00892 81 282 2.9E-39 T 15-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 NJ56_13070 f60a940f01e99921dc9fa0787eba94de 305 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 143 151 - T 15-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 NJ56_13070 f60a940f01e99921dc9fa0787eba94de 305 SMART SM00477 82 282 8.2E-56 T 15-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 NJ56_14505 1fce6f1a3c323890e3d5f5590ce9c6e0 457 Pfam PF01554 MatE 17 177 1.5E-36 T 15-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 NJ56_14505 1fce6f1a3c323890e3d5f5590ce9c6e0 457 Pfam PF01554 MatE 244 405 5.6E-37 T 15-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 NJ56_14505 1fce6f1a3c323890e3d5f5590ce9c6e0 457 Hamap MF_00400 Multidrug resistance protein MdtK [mdtK]. 1 457 50.176 T 15-10-2018 IPR022913 Multidrug resistance protein MdtK NJ56_14505 1fce6f1a3c323890e3d5f5590ce9c6e0 457 PIRSF PIRSF006603 2 452 4.5E-63 T 15-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 NJ56_14505 1fce6f1a3c323890e3d5f5590ce9c6e0 457 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 422 2.7E-118 T 15-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 NJ56_13305 5481aed327ed5bce89d16b6c07fe840d 180 Gene3D G3DSA:3.40.390.50 23 135 2.5E-10 T 15-10-2018 NJ56_13305 5481aed327ed5bce89d16b6c07fe840d 180 Pfam PF06114 IrrE N-terminal-like domain 50 170 1.4E-27 T 15-10-2018 IPR010359 IrrE N-terminal-like domain NJ56_12195 551c3625ab727a1a7608b1ab90b31adb 75 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 69 2.0E-22 T 15-10-2018 IPR009857 Uncharacterised protein family UPF0352 NJ56_12195 551c3625ab727a1a7608b1ab90b31adb 75 SUPERFAMILY SSF158651 1 75 5.49E-31 T 15-10-2018 IPR023202 YejL-like superfamily NJ56_12195 551c3625ab727a1a7608b1ab90b31adb 75 PIRSF PIRSF006188 1 72 1.9E-34 T 15-10-2018 IPR009857 Uncharacterised protein family UPF0352 NJ56_12195 551c3625ab727a1a7608b1ab90b31adb 75 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 71 23.26 T 15-10-2018 IPR009857 Uncharacterised protein family UPF0352 NJ56_12195 551c3625ab727a1a7608b1ab90b31adb 75 Gene3D G3DSA:1.10.3390.10 1 75 2.6E-34 T 15-10-2018 IPR023202 YejL-like superfamily NJ56_12195 551c3625ab727a1a7608b1ab90b31adb 75 Pfam PF07208 Protein of unknown function (DUF1414) 26 69 2.8E-23 T 15-10-2018 IPR009857 Uncharacterised protein family UPF0352 NJ56_17340 0f3290e72d716f1e4c0b10b9a737558c 294 SUPERFAMILY SSF53927 1 149 3.68E-42 T 15-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 NJ56_17340 0f3290e72d716f1e4c0b10b9a737558c 294 Gene3D G3DSA:3.40.140.10 180 294 4.7E-28 T 15-10-2018 NJ56_17340 0f3290e72d716f1e4c0b10b9a737558c 294 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 31 284 2.7E-85 T 15-10-2018 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 NJ56_17340 0f3290e72d716f1e4c0b10b9a737558c 294 PIRSF PIRSF006334 14 294 1.7E-106 T 15-10-2018 NJ56_17340 0f3290e72d716f1e4c0b10b9a737558c 294 Gene3D G3DSA:3.40.140.10 29 179 6.1E-43 T 15-10-2018 NJ56_17340 0f3290e72d716f1e4c0b10b9a737558c 294 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 102 136 - T 15-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 NJ56_17340 0f3290e72d716f1e4c0b10b9a737558c 294 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 60 140 2.0E-12 T 15-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain NJ56_17340 0f3290e72d716f1e4c0b10b9a737558c 294 Hamap MF_01558 Cytidine deaminase [cdd]. 1 293 49.334 T 15-10-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 NJ56_17340 0f3290e72d716f1e4c0b10b9a737558c 294 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 157 278 2.4E-44 T 15-10-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 NJ56_17340 0f3290e72d716f1e4c0b10b9a737558c 294 SUPERFAMILY SSF53927 153 291 1.59E-40 T 15-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 NJ56_14400 e330bb693bbfceaef854453940ac60f8 687 SUPERFAMILY SSF56935 52 687 4.4E-98 T 15-10-2018 NJ56_14400 e330bb693bbfceaef854453940ac60f8 687 Pfam PF07715 TonB-dependent Receptor Plug Domain 67 169 7.7E-22 T 15-10-2018 IPR012910 TonB-dependent receptor, plug domain NJ56_14400 e330bb693bbfceaef854453940ac60f8 687 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 59 - T 15-10-2018 IPR010916 TonB box, conserved site NJ56_14400 e330bb693bbfceaef854453940ac60f8 687 Gene3D G3DSA:2.170.130.10 51 174 1.9E-39 T 15-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily NJ56_14400 e330bb693bbfceaef854453940ac60f8 687 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 52 687 2.3E-172 T 15-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 NJ56_14400 e330bb693bbfceaef854453940ac60f8 687 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 53 687 2.4E-131 T 15-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 NJ56_14400 e330bb693bbfceaef854453940ac60f8 687 Pfam PF00593 TonB dependent receptor 254 685 1.3E-40 T 15-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel NJ56_14400 e330bb693bbfceaef854453940ac60f8 687 Gene3D G3DSA:2.40.170.20 175 687 8.6E-126 T 15-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NJ56_03340 635d2bf9f668d7b86fd8bc676a8dbb7e 388 Pfam PF01380 SIS domain 54 191 1.3E-10 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_03340 635d2bf9f668d7b86fd8bc676a8dbb7e 388 Pfam PF01380 SIS domain 227 356 4.2E-13 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_03340 635d2bf9f668d7b86fd8bc676a8dbb7e 388 Gene3D G3DSA:3.40.50.10490 4 202 3.1E-52 T 15-10-2018 NJ56_03340 635d2bf9f668d7b86fd8bc676a8dbb7e 388 SUPERFAMILY SSF53697 19 377 3.23E-53 T 15-10-2018 NJ56_03340 635d2bf9f668d7b86fd8bc676a8dbb7e 388 Gene3D G3DSA:3.40.50.10490 203 380 3.8E-64 T 15-10-2018 NJ56_03340 635d2bf9f668d7b86fd8bc676a8dbb7e 388 TIGRFAM TIGR02815 agaS_fam: putative sugar isomerase, AgaS family 16 386 7.1E-161 T 15-10-2018 IPR014180 Sugar isomerase, AgaS GO:0016853 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 Pfam PF13180 PDZ domain 293 381 3.2E-14 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 SUPERFAMILY SSF50156 405 474 2.63E-15 T 15-10-2018 IPR036034 PDZ superfamily GO:0005515 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 Gene3D G3DSA:2.30.42.10 389 477 2.1E-29 T 15-10-2018 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 SMART SM00228 290 372 2.4E-11 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 SMART SM00228 397 469 5.5E-10 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 SUPERFAMILY SSF50156 272 381 4.93E-21 T 15-10-2018 IPR036034 PDZ superfamily GO:0005515 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 Gene3D G3DSA:2.30.42.10 288 388 5.1E-27 T 15-10-2018 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 SUPERFAMILY SSF50494 4 299 6.23E-62 T 15-10-2018 IPR009003 Peptidase S1, PA clan NJ56_02420 f19e966b2d138713d422547f3dd92353 477 Gene3D G3DSA:2.40.10.120 37 284 1.7E-81 T 15-10-2018 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 PRINTS PR00834 HtrA/DegQ protease family signature 125 137 2.7E-59 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 PRINTS PR00834 HtrA/DegQ protease family signature 187 211 2.7E-59 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 PRINTS PR00834 HtrA/DegQ protease family signature 222 239 2.7E-59 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 PRINTS PR00834 HtrA/DegQ protease family signature 244 261 2.7E-59 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 PRINTS PR00834 HtrA/DegQ protease family signature 146 166 2.7E-59 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 PRINTS PR00834 HtrA/DegQ protease family signature 330 342 2.7E-59 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 Pfam PF13365 Trypsin-like peptidase domain 115 251 3.4E-30 T 15-10-2018 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 390 465 1.3E-11 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_02420 f19e966b2d138713d422547f3dd92353 477 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 39 475 6.4E-160 T 15-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 NJ56_10785 555991bcf8e587d1d09cfb278cca6eee 450 Gene3D G3DSA:3.90.640.10 330 378 2.0E-12 T 15-10-2018 NJ56_10785 555991bcf8e587d1d09cfb278cca6eee 450 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 213 226 - T 15-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 NJ56_10785 555991bcf8e587d1d09cfb278cca6eee 450 Gene3D G3DSA:3.30.420.40 379 433 2.0E-12 T 15-10-2018 NJ56_10785 555991bcf8e587d1d09cfb278cca6eee 450 SUPERFAMILY SSF53067 1 204 9.06E-26 T 15-10-2018 NJ56_10785 555991bcf8e587d1d09cfb278cca6eee 450 SUPERFAMILY SSF53067 208 447 2.85E-32 T 15-10-2018 NJ56_10785 555991bcf8e587d1d09cfb278cca6eee 450 Pfam PF00012 Hsp70 protein 3 229 1.7E-13 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_10785 555991bcf8e587d1d09cfb278cca6eee 450 Pfam PF00012 Hsp70 protein 331 423 6.4E-6 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_01255 242260c4c13b5c1c3b989e9e5bb077da 392 Pfam PF00529 HlyD membrane-fusion protein of T1SS 42 362 5.7E-10 T 15-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 NJ56_01255 242260c4c13b5c1c3b989e9e5bb077da 392 Gene3D G3DSA:1.10.287.470 101 174 1.5E-114 T 15-10-2018 NJ56_01255 242260c4c13b5c1c3b989e9e5bb077da 392 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 66 295 3.1E-11 T 15-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NJ56_01255 242260c4c13b5c1c3b989e9e5bb077da 392 Gene3D G3DSA:2.40.30.170 54 305 1.5E-114 T 15-10-2018 NJ56_01255 242260c4c13b5c1c3b989e9e5bb077da 392 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 377 2.2E-82 T 15-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 NJ56_01255 242260c4c13b5c1c3b989e9e5bb077da 392 Gene3D G3DSA:2.40.420.20 306 375 1.5E-114 T 15-10-2018 NJ56_01255 242260c4c13b5c1c3b989e9e5bb077da 392 Gene3D G3DSA:2.40.50.100 66 210 1.5E-114 T 15-10-2018 NJ56_01255 242260c4c13b5c1c3b989e9e5bb077da 392 SUPERFAMILY SSF111369 54 302 2.09E-88 T 15-10-2018 NJ56_05215 951f03d9606936af38cb2906f53eaccd 156 Gene3D G3DSA:3.10.129.10 7 156 2.3E-49 T 15-10-2018 NJ56_05215 951f03d9606936af38cb2906f53eaccd 156 SUPERFAMILY SSF54637 17 155 7.28E-24 T 15-10-2018 IPR029069 HotDog domain superfamily NJ56_05215 951f03d9606936af38cb2906f53eaccd 156 Pfam PF03061 Thioesterase superfamily 59 144 1.5E-15 T 15-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 NJ56_05215 951f03d9606936af38cb2906f53eaccd 156 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 27 154 5.9E-15 T 15-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 NJ56_12790 5f5bb909c942a223709aae11262df28c 388 Pfam PF00691 OmpA family 159 253 2.6E-12 T 15-10-2018 IPR006665 OmpA-like domain NJ56_12790 5f5bb909c942a223709aae11262df28c 388 SUPERFAMILY SSF103088 155 263 3.01E-18 T 15-10-2018 IPR036737 OmpA-like domain superfamily NJ56_12790 5f5bb909c942a223709aae11262df28c 388 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 12 66 9.8E-21 T 15-10-2018 IPR025713 Motility protein B, N-terminal domain NJ56_12790 5f5bb909c942a223709aae11262df28c 388 Gene3D G3DSA:3.30.1330.60 106 292 4.3E-62 T 15-10-2018 IPR036737 OmpA-like domain superfamily NJ56_12290 075e960716f64143367c97c52ab7aaa2 394 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 394 223.096 T 15-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 NJ56_12290 075e960716f64143367c97c52ab7aaa2 394 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 392 3.9E-212 T 15-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 NJ56_12290 075e960716f64143367c97c52ab7aaa2 394 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 388 2.1E-156 T 15-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 NJ56_12290 075e960716f64143367c97c52ab7aaa2 394 PIRSF PIRSF016049 1 392 2.9E-178 T 15-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 NJ56_12290 075e960716f64143367c97c52ab7aaa2 394 SUPERFAMILY SSF51658 1 383 2.34E-80 T 15-10-2018 IPR036237 Xylose isomerase-like superfamily NJ56_10100 4e59321a1438893c877d43b091b37863 192 SUPERFAMILY SSF46689 1 87 2.51E-14 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_10100 4e59321a1438893c877d43b091b37863 192 Pfam PF01527 Transposase 2 72 4.8E-10 T 15-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 NJ56_10100 4e59321a1438893c877d43b091b37863 192 SUPERFAMILY SSF53098 83 176 2.12E-19 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_10100 4e59321a1438893c877d43b091b37863 192 Pfam PF00665 Integrase core domain 85 136 6.7E-14 T 15-10-2018 IPR001584 Integrase, catalytic core GO:0015074 NJ56_10100 4e59321a1438893c877d43b091b37863 192 Gene3D G3DSA:3.30.420.10 38 159 1.9E-6 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_07965 739995011d1e3029099197705942024a 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 15-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NJ56_07965 739995011d1e3029099197705942024a 449 SMART SM00878 336 441 1.3E-64 T 15-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 NJ56_07965 739995011d1e3029099197705942024a 449 Gene3D G3DSA:3.30.470.20 86 433 9.0E-158 T 15-10-2018 NJ56_07965 739995011d1e3029099197705942024a 449 Gene3D G3DSA:3.30.1490.20 131 203 9.0E-158 T 15-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 NJ56_07965 739995011d1e3029099197705942024a 449 Gene3D G3DSA:3.40.50.20 1 85 2.6E-34 T 15-10-2018 NJ56_07965 739995011d1e3029099197705942024a 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.5E-44 T 15-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 NJ56_07965 739995011d1e3029099197705942024a 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 1.7E-38 T 15-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 NJ56_07965 739995011d1e3029099197705942024a 449 SUPERFAMILY SSF52440 1 113 1.8E-46 T 15-10-2018 IPR016185 Pre-ATP-grasp domain superfamily NJ56_07965 739995011d1e3029099197705942024a 449 SUPERFAMILY SSF51246 331 444 6.8E-44 T 15-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 NJ56_07965 739995011d1e3029099197705942024a 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 15-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NJ56_07965 739995011d1e3029099197705942024a 449 SUPERFAMILY SSF56059 83 347 2.36E-69 T 15-10-2018 NJ56_07965 739995011d1e3029099197705942024a 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 323 5.4E-85 T 15-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NJ56_07965 739995011d1e3029099197705942024a 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 447 1.0E-249 T 15-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 NJ56_17685 8aef5d7f47e0b43014cdef054d33fc25 262 Pfam PF13728 F plasmid transfer operon protein 23 230 5.8E-43 T 15-10-2018 IPR039555 F plasmid transfer operon protein NJ56_17685 8aef5d7f47e0b43014cdef054d33fc25 262 SUPERFAMILY SSF52833 131 224 1.95E-11 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_17685 8aef5d7f47e0b43014cdef054d33fc25 262 Gene3D G3DSA:3.40.30.10 131 230 8.7E-10 T 15-10-2018 NJ56_10150 678e6641676409b4037b920a7d990423 240 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 177 232 9.2E-11 T 15-10-2018 IPR016148 Pili assembly chaperone, C-terminal NJ56_10150 678e6641676409b4037b920a7d990423 240 PRINTS PR00969 Pili chaperone signature 38 47 1.8E-29 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_10150 678e6641676409b4037b920a7d990423 240 PRINTS PR00969 Pili chaperone signature 172 187 1.8E-29 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_10150 678e6641676409b4037b920a7d990423 240 PRINTS PR00969 Pili chaperone signature 111 128 1.8E-29 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_10150 678e6641676409b4037b920a7d990423 240 PRINTS PR00969 Pili chaperone signature 137 152 1.8E-29 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_10150 678e6641676409b4037b920a7d990423 240 PRINTS PR00969 Pili chaperone signature 83 104 1.8E-29 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_10150 678e6641676409b4037b920a7d990423 240 Gene3D G3DSA:2.60.40.10 38 153 6.5E-33 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_10150 678e6641676409b4037b920a7d990423 240 SUPERFAMILY SSF49354 37 155 3.14E-33 T 15-10-2018 IPR008962 PapD-like superfamily NJ56_10150 678e6641676409b4037b920a7d990423 240 SUPERFAMILY SSF49584 163 234 7.85E-19 T 15-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily NJ56_10150 678e6641676409b4037b920a7d990423 240 Gene3D G3DSA:2.60.40.10 158 239 9.0E-22 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_10150 678e6641676409b4037b920a7d990423 240 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 37 155 5.5E-33 T 15-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 NJ56_03635 4b7e751ce3e67d2007ced3aff64ad9d5 712 ProSitePatterns PS00850 Glycine radical domain signature. 676 684 - T 15-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site NJ56_03635 4b7e751ce3e67d2007ced3aff64ad9d5 712 Pfam PF03477 ATP cone domain 4 89 1.3E-19 T 15-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 NJ56_03635 4b7e751ce3e67d2007ced3aff64ad9d5 712 SUPERFAMILY SSF51998 121 687 1.31E-192 T 15-10-2018 NJ56_03635 4b7e751ce3e67d2007ced3aff64ad9d5 712 Gene3D G3DSA:3.20.70.20 121 687 4.6E-231 T 15-10-2018 NJ56_03635 4b7e751ce3e67d2007ced3aff64ad9d5 712 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 115 705 1.0E-203 T 15-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 NJ56_03635 4b7e751ce3e67d2007ced3aff64ad9d5 712 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 705 4.7E-180 T 15-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 NJ56_17590 757d1c01b43f1a0b0367d802ebbb7091 179 SUPERFAMILY SSF55154 9 177 9.97E-35 T 15-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 NJ56_17590 757d1c01b43f1a0b0367d802ebbb7091 179 SMART SM01118 8 179 1.9E-10 T 15-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 NJ56_17590 757d1c01b43f1a0b0367d802ebbb7091 179 Gene3D G3DSA:2.40.320.10 1 179 1.9E-46 T 15-10-2018 NJ56_17590 757d1c01b43f1a0b0367d802ebbb7091 179 Pfam PF01928 CYTH domain 9 173 4.7E-19 T 15-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 NJ56_17590 757d1c01b43f1a0b0367d802ebbb7091 179 ProDom PD009560 CYCLASE ADENYLATE CYCLASE ADENYLYL CYAB LYASE CLASS CYAB-TYPE THERMOPHILIC MJ0240 35 137 3.0E-5 T 15-10-2018 NJ56_12260 664e9902c9ff49ed8a30c967706e3693 235 Pfam PF01569 PAP2 superfamily 97 201 3.2E-11 T 15-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NJ56_12260 664e9902c9ff49ed8a30c967706e3693 235 Gene3D G3DSA:1.20.144.10 6 227 1.5E-5 T 15-10-2018 NJ56_12260 664e9902c9ff49ed8a30c967706e3693 235 SUPERFAMILY SSF48317 10 211 6.8E-25 T 15-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily NJ56_12260 664e9902c9ff49ed8a30c967706e3693 235 SMART SM00014 92 210 8.4E-15 T 15-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NJ56_12260 664e9902c9ff49ed8a30c967706e3693 235 Hamap MF_01945 Lipid A 1-diphosphate synthase [lpxT]. 2 233 41.581 T 15-10-2018 IPR032908 Lipid A 1-diphosphate synthase GO:0005886|GO:0043165|GO:0050380 NJ56_09065 12a9df17ec7bb16e7c037bce87d30886 239 Pfam PF02390 Putative methyltransferase 64 233 1.3E-61 T 15-10-2018 NJ56_09065 12a9df17ec7bb16e7c037bce87d30886 239 SUPERFAMILY SSF53335 18 237 6.48E-38 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_09065 12a9df17ec7bb16e7c037bce87d30886 239 Gene3D G3DSA:3.40.50.150 30 239 3.6E-71 T 15-10-2018 NJ56_09065 12a9df17ec7bb16e7c037bce87d30886 239 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 238 1.9E-71 T 15-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 NJ56_09065 12a9df17ec7bb16e7c037bce87d30886 239 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 24 238 30.691 T 15-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 NJ56_03940 5928d91955257eee12691fbd76903657 212 Pfam PF01625 Peptide methionine sulfoxide reductase 45 199 1.0E-65 T 15-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 NJ56_03940 5928d91955257eee12691fbd76903657 212 SUPERFAMILY SSF55068 8 208 3.53E-81 T 15-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 NJ56_03940 5928d91955257eee12691fbd76903657 212 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 43 205 38.266 T 15-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 NJ56_03940 5928d91955257eee12691fbd76903657 212 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 44 199 5.7E-67 T 15-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 NJ56_03940 5928d91955257eee12691fbd76903657 212 Gene3D G3DSA:3.30.1060.10 3 212 1.3E-86 T 15-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 NJ56_04500 cc4a27fc6f91c524e0e348f95d0efa0c 127 Pfam PF11990 Protein of unknown function (DUF3487) 3 114 2.2E-43 T 15-10-2018 IPR021877 Protein of unknown function DUF3487 NJ56_04500 cc4a27fc6f91c524e0e348f95d0efa0c 127 TIGRFAM TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family 4 113 8.2E-42 T 15-10-2018 IPR021877 Protein of unknown function DUF3487 NJ56_14410 ad455dfa7a390dce738d36f3ada56d14 348 Pfam PF00793 DAHP synthetase I family 39 337 2.8E-100 T 15-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 NJ56_14410 ad455dfa7a390dce738d36f3ada56d14 348 PIRSF PIRSF001361 1 348 1.4E-155 T 15-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 NJ56_14410 ad455dfa7a390dce738d36f3ada56d14 348 Gene3D G3DSA:3.20.20.70 1 348 1.4E-153 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_14410 ad455dfa7a390dce738d36f3ada56d14 348 SUPERFAMILY SSF51569 7 347 3.87E-130 T 15-10-2018 NJ56_14410 ad455dfa7a390dce738d36f3ada56d14 348 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 5 348 5.9E-167 T 15-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 NJ56_04745 e554c19a22eb1681951324ffaccc4a25 376 SUPERFAMILY SSF102114 40 364 7.19E-55 T 15-10-2018 NJ56_04745 e554c19a22eb1681951324ffaccc4a25 376 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 259 361 1.4E-23 T 15-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 NJ56_04745 e554c19a22eb1681951324ffaccc4a25 376 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 5 368 7.7E-166 T 15-10-2018 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 NJ56_04745 e554c19a22eb1681951324ffaccc4a25 376 Gene3D G3DSA:3.20.20.70 12 366 6.7E-106 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_04745 e554c19a22eb1681951324ffaccc4a25 376 SMART SM00876 259 362 4.5E-33 T 15-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 NJ56_04745 e554c19a22eb1681951324ffaccc4a25 376 Pfam PF04055 Radical SAM superfamily 83 229 1.2E-8 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_13945 5c2ff678208b04b3d2128f09c596aa9e 267 Pfam PF03609 PTS system sorbose-specific iic component 6 237 1.8E-75 T 15-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 NJ56_13945 5c2ff678208b04b3d2128f09c596aa9e 267 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 267 5.4E-126 T 15-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 NJ56_03990 4d776f2becc435db4210658806b3f9df 75 Pfam PF01084 Ribosomal protein S18 19 68 9.1E-25 T 15-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03990 4d776f2becc435db4210658806b3f9df 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 3.0E-22 T 15-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03990 4d776f2becc435db4210658806b3f9df 75 Gene3D G3DSA:4.10.640.10 20 75 4.2E-29 T 15-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03990 4d776f2becc435db4210658806b3f9df 75 SUPERFAMILY SSF46911 3 74 7.06E-29 T 15-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03990 4d776f2becc435db4210658806b3f9df 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 15-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03990 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.3E-18 T 15-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03990 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.3E-18 T 15-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03990 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.3E-18 T 15-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03990 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.3E-18 T 15-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03990 4d776f2becc435db4210658806b3f9df 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 8.1E-38 T 15-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03990 4d776f2becc435db4210658806b3f9df 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.313 T 15-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_05490 ab3c309a9d2571da3ad2c09a9fa15063 275 Hamap MF_01233 HTH-type transcriptional regulator HdfR [hdfR]. 1 272 52.151 T 15-10-2018 IPR020890 Transcription regulator HTH, HdfR GO:0003677|GO:0003700|GO:0045892 NJ56_05490 ab3c309a9d2571da3ad2c09a9fa15063 275 SUPERFAMILY SSF46785 2 80 1.4E-22 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_05490 ab3c309a9d2571da3ad2c09a9fa15063 275 Pfam PF03466 LysR substrate binding domain 88 267 4.7E-18 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_05490 ab3c309a9d2571da3ad2c09a9fa15063 275 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.3E-9 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05490 ab3c309a9d2571da3ad2c09a9fa15063 275 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.3E-9 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05490 ab3c309a9d2571da3ad2c09a9fa15063 275 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.3E-9 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05490 ab3c309a9d2571da3ad2c09a9fa15063 275 SUPERFAMILY SSF53850 90 269 2.64E-19 T 15-10-2018 NJ56_05490 ab3c309a9d2571da3ad2c09a9fa15063 275 Gene3D G3DSA:3.40.190.10 83 178 1.1E-8 T 15-10-2018 NJ56_05490 ab3c309a9d2571da3ad2c09a9fa15063 275 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.1E-20 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_05490 ab3c309a9d2571da3ad2c09a9fa15063 275 Gene3D G3DSA:1.10.10.10 1 82 6.1E-25 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_11505 de61aeea3ade1fb1395488f6541aed78 378 SUPERFAMILY SSF52283 4 109 3.83E-17 T 15-10-2018 NJ56_11505 de61aeea3ade1fb1395488f6541aed78 378 Gene3D G3DSA:3.30.1370.170 293 375 2.6E-33 T 15-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 NJ56_11505 de61aeea3ade1fb1395488f6541aed78 378 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 357 46.752 T 15-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 NJ56_11505 de61aeea3ade1fb1395488f6541aed78 378 Gene3D G3DSA:3.40.50.720 92 257 2.3E-113 T 15-10-2018 NJ56_11505 de61aeea3ade1fb1395488f6541aed78 378 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 256 1.6E-31 T 15-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 NJ56_11505 de61aeea3ade1fb1395488f6541aed78 378 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 119 146 - T 15-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 NJ56_11505 de61aeea3ade1fb1395488f6541aed78 378 Pfam PF11890 Domain of unknown function (DUF3410) 289 369 2.0E-30 T 15-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 NJ56_11505 de61aeea3ade1fb1395488f6541aed78 378 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 7 279 2.2E-17 T 15-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 NJ56_11505 de61aeea3ade1fb1395488f6541aed78 378 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 197 213 - T 15-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site NJ56_11505 de61aeea3ade1fb1395488f6541aed78 378 SUPERFAMILY SSF51735 91 258 3.04E-33 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_11505 de61aeea3ade1fb1395488f6541aed78 378 Gene3D G3DSA:3.40.50.720 3 277 2.3E-113 T 15-10-2018 NJ56_12245 0ae9cf00e4e9cfa817637730c9af871b 602 PIRSF PIRSF002741 7 593 6.9E-136 T 15-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 NJ56_12245 0ae9cf00e4e9cfa817637730c9af871b 602 Gene3D G3DSA:3.10.105.10 310 568 2.4E-217 T 15-10-2018 NJ56_12245 0ae9cf00e4e9cfa817637730c9af871b 602 Gene3D G3DSA:3.40.190.10 28 588 2.4E-217 T 15-10-2018 NJ56_12245 0ae9cf00e4e9cfa817637730c9af871b 602 SUPERFAMILY SSF53850 50 591 1.32E-108 T 15-10-2018 NJ56_12245 0ae9cf00e4e9cfa817637730c9af871b 602 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 99 503 6.5E-70 T 15-10-2018 IPR000914 Solute-binding protein family 5 domain NJ56_00535 c49fe2bbf2a9e945d59428764b9651ea 379 Gene3D G3DSA:2.30.40.10 7 376 1.5E-137 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_00535 c49fe2bbf2a9e945d59428764b9651ea 379 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 377 6.4E-164 T 15-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 NJ56_00535 c49fe2bbf2a9e945d59428764b9651ea 379 SUPERFAMILY SSF51556 54 350 1.26E-100 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_00535 c49fe2bbf2a9e945d59428764b9651ea 379 SUPERFAMILY SSF51338 1 53 9.45E-19 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_00535 c49fe2bbf2a9e945d59428764b9651ea 379 PIRSF PIRSF038994 1 379 1.3E-114 T 15-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 NJ56_00535 c49fe2bbf2a9e945d59428764b9651ea 379 Gene3D G3DSA:3.20.20.140 55 344 1.5E-137 T 15-10-2018 NJ56_00535 c49fe2bbf2a9e945d59428764b9651ea 379 Pfam PF01979 Amidohydrolase family 50 379 2.8E-42 T 15-10-2018 IPR006680 Amidohydrolase-related GO:0016787 NJ56_17345 f452cf3b503902538ed59bdcab6e5d19 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 2.0E-15 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_17345 f452cf3b503902538ed59bdcab6e5d19 299 Pfam PF03466 LysR substrate binding domain 96 299 1.7E-26 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_17345 f452cf3b503902538ed59bdcab6e5d19 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 3.4E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_17345 f452cf3b503902538ed59bdcab6e5d19 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 3.4E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_17345 f452cf3b503902538ed59bdcab6e5d19 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 3.4E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_17345 f452cf3b503902538ed59bdcab6e5d19 299 SUPERFAMILY SSF46785 5 83 5.45E-17 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_17345 f452cf3b503902538ed59bdcab6e5d19 299 SUPERFAMILY SSF53850 90 297 1.09E-45 T 15-10-2018 NJ56_17345 f452cf3b503902538ed59bdcab6e5d19 299 Gene3D G3DSA:3.40.190.10 171 270 1.5E-64 T 15-10-2018 NJ56_17345 f452cf3b503902538ed59bdcab6e5d19 299 Gene3D G3DSA:1.10.10.10 1 86 1.0E-28 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_17345 f452cf3b503902538ed59bdcab6e5d19 299 Gene3D G3DSA:3.40.190.10 90 295 1.5E-64 T 15-10-2018 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 ProSitePatterns PS00331 Malic enzymes signature. 267 283 - T 15-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 Pfam PF03949 Malic enzyme, NAD binding domain 271 530 3.2E-102 T 15-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 SUPERFAMILY SSF51735 271 562 6.9E-95 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 4 565 71.207 T 15-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 SMART SM01274 81 261 2.6E-108 T 15-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 PRINTS PR00072 Malic enzyme signature 242 260 9.3E-72 T 15-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 PRINTS PR00072 Malic enzyme signature 408 424 9.3E-72 T 15-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 PRINTS PR00072 Malic enzyme signature 147 176 9.3E-72 T 15-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 PRINTS PR00072 Malic enzyme signature 183 205 9.3E-72 T 15-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 PRINTS PR00072 Malic enzyme signature 267 283 9.3E-72 T 15-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 PRINTS PR00072 Malic enzyme signature 87 111 9.3E-72 T 15-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 PRINTS PR00072 Malic enzyme signature 298 314 9.3E-72 T 15-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 Gene3D G3DSA:3.40.50.10380 18 268 2.3E-114 T 15-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 PIRSF PIRSF000106 3 563 6.4E-228 T 15-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 Pfam PF00390 Malic enzyme, N-terminal domain 81 260 9.9E-79 T 15-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 Gene3D G3DSA:3.40.50.720 269 565 5.5E-108 T 15-10-2018 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 SUPERFAMILY SSF53223 6 270 3.31E-110 T 15-10-2018 NJ56_17355 d15a65f351c6831541810bbfc5b244ec 565 SMART SM00919 271 531 6.2E-134 T 15-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 NJ56_05820 f685dbf9d53adad9decbb39bcf28312f 156 Gene3D G3DSA:3.10.420.10 1 154 1.3E-62 T 15-10-2018 IPR035958 SecB-like superfamily NJ56_05820 f685dbf9d53adad9decbb39bcf28312f 156 Pfam PF02556 Preprotein translocase subunit SecB 5 144 1.4E-57 T 15-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 NJ56_05820 f685dbf9d53adad9decbb39bcf28312f 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 145 33.674 T 15-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 NJ56_05820 f685dbf9d53adad9decbb39bcf28312f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 8.4E-42 T 15-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 NJ56_05820 f685dbf9d53adad9decbb39bcf28312f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 73 93 8.4E-42 T 15-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 NJ56_05820 f685dbf9d53adad9decbb39bcf28312f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 123 141 8.4E-42 T 15-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 NJ56_05820 f685dbf9d53adad9decbb39bcf28312f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 97 119 8.4E-42 T 15-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 NJ56_05820 f685dbf9d53adad9decbb39bcf28312f 156 SUPERFAMILY SSF54611 2 141 1.09E-53 T 15-10-2018 IPR035958 SecB-like superfamily NJ56_05820 f685dbf9d53adad9decbb39bcf28312f 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 5 144 1.3E-69 T 15-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 NJ56_02820 ba9a2cf747bf8bb6b955b0bacf53c641 200 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 188 3.5E-94 T 15-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 NJ56_02820 ba9a2cf747bf8bb6b955b0bacf53c641 200 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 43.771 T 15-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 NJ56_02820 ba9a2cf747bf8bb6b955b0bacf53c641 200 SUPERFAMILY SSF52016 2 197 3.34E-58 T 15-10-2018 NJ56_02820 ba9a2cf747bf8bb6b955b0bacf53c641 200 Pfam PF00694 Aconitase C-terminal domain 1 124 3.7E-37 T 15-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 NJ56_02820 ba9a2cf747bf8bb6b955b0bacf53c641 200 Gene3D G3DSA:3.20.19.10 1 180 1.1E-75 T 15-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 NJ56_07280 7a17ea9ed6b1caa648eaa24f0b52204d 601 Pfam PF00999 Sodium/hydrogen exchanger family 10 372 9.5E-66 T 15-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 NJ56_07280 7a17ea9ed6b1caa648eaa24f0b52204d 601 SUPERFAMILY SSF51735 401 528 2.96E-29 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_07280 7a17ea9ed6b1caa648eaa24f0b52204d 601 Gene3D G3DSA:1.20.1530.20 3 384 4.8E-82 T 15-10-2018 IPR038770 Sodium/solute symporter superfamily NJ56_07280 7a17ea9ed6b1caa648eaa24f0b52204d 601 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 2 598 49.693 T 15-10-2018 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 NJ56_07280 7a17ea9ed6b1caa648eaa24f0b52204d 601 Pfam PF02254 TrkA-N domain 402 512 1.4E-23 T 15-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 NJ56_07280 7a17ea9ed6b1caa648eaa24f0b52204d 601 Gene3D G3DSA:3.40.50.720 399 560 1.2E-34 T 15-10-2018 NJ56_07280 7a17ea9ed6b1caa648eaa24f0b52204d 601 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 282 2.3E-87 T 15-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 NJ56_06055 b8da9e35af2ab598e1da21c29be0dd38 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 15-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 NJ56_06055 b8da9e35af2ab598e1da21c29be0dd38 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 6.3E-32 T 15-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 NJ56_06055 b8da9e35af2ab598e1da21c29be0dd38 469 Gene3D G3DSA:3.10.20.70 2 104 7.6E-42 T 15-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NJ56_06055 b8da9e35af2ab598e1da21c29be0dd38 469 Gene3D G3DSA:3.30.590.10 105 457 7.4E-149 T 15-10-2018 NJ56_06055 b8da9e35af2ab598e1da21c29be0dd38 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 4.0E-214 T 15-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NJ56_06055 b8da9e35af2ab598e1da21c29be0dd38 469 SUPERFAMILY SSF54368 3 100 2.88E-36 T 15-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NJ56_06055 b8da9e35af2ab598e1da21c29be0dd38 469 SMART SM01230 102 379 4.0E-147 T 15-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NJ56_06055 b8da9e35af2ab598e1da21c29be0dd38 469 SUPERFAMILY SSF55931 102 468 7.55E-137 T 15-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 NJ56_06055 b8da9e35af2ab598e1da21c29be0dd38 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 15-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NJ56_06055 b8da9e35af2ab598e1da21c29be0dd38 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 8.2E-137 T 15-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NJ56_06055 b8da9e35af2ab598e1da21c29be0dd38 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 15-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 NJ56_16830 17f24d383089d4adfc7208807bd17bdc 215 SUPERFAMILY SSF56281 2 207 3.14E-60 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_16830 17f24d383089d4adfc7208807bd17bdc 215 Gene3D G3DSA:3.60.15.10 1 210 9.7E-85 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_16830 17f24d383089d4adfc7208807bd17bdc 215 Pfam PF00753 Metallo-beta-lactamase superfamily 10 192 8.3E-31 T 15-10-2018 IPR001279 Metallo-beta-lactamase NJ56_16830 17f24d383089d4adfc7208807bd17bdc 215 SMART SM00849 12 192 5.7E-41 T 15-10-2018 IPR001279 Metallo-beta-lactamase NJ56_17540 3b25a3d13cace19d410880ec95ee988a 310 Gene3D G3DSA:3.40.190.120 133 246 4.3E-96 T 15-10-2018 NJ56_17540 3b25a3d13cace19d410880ec95ee988a 310 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 29 304 2.1E-54 T 15-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 NJ56_17540 3b25a3d13cace19d410880ec95ee988a 310 SUPERFAMILY SSF53850 29 308 6.33E-57 T 15-10-2018 NJ56_17540 3b25a3d13cace19d410880ec95ee988a 310 Gene3D G3DSA:3.40.190.10 32 306 4.3E-96 T 15-10-2018 NJ56_15215 fa5385506114a00ea427c0c56327d2a7 389 SMART SM00028 69 102 64.0 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_15215 fa5385506114a00ea427c0c56327d2a7 389 SMART SM00028 214 247 0.47 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_15215 fa5385506114a00ea427c0c56327d2a7 389 SMART SM00028 180 213 23.0 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_15215 fa5385506114a00ea427c0c56327d2a7 389 SMART SM00028 107 140 99.0 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_15215 fa5385506114a00ea427c0c56327d2a7 389 SUPERFAMILY SSF48452 110 268 5.5E-15 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_15215 fa5385506114a00ea427c0c56327d2a7 389 SUPERFAMILY SSF48452 38 136 2.09E-7 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_15215 fa5385506114a00ea427c0c56327d2a7 389 Gene3D G3DSA:1.25.40.10 178 345 4.9E-15 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_15215 fa5385506114a00ea427c0c56327d2a7 389 Pfam PF13176 Tetratricopeptide repeat 71 97 0.028 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_15215 fa5385506114a00ea427c0c56327d2a7 389 Gene3D G3DSA:1.25.40.10 24 177 2.9E-14 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_15215 fa5385506114a00ea427c0c56327d2a7 389 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 387 36.729 T 15-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 NJ56_15215 fa5385506114a00ea427c0c56327d2a7 389 Pfam PF13432 Tetratricopeptide repeat 187 243 0.0076 T 15-10-2018 NJ56_12710 08e8aaf8669c2f1d3d9c2b6de342fe8d 299 Pfam PF11004 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase 26 296 1.3E-112 T 15-10-2018 IPR021266 Kdo hydroxylase NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 204 3.2E-68 T 15-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 Gene3D G3DSA:1.10.8.10 157 204 4.5E-24 T 15-10-2018 NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 Gene3D G3DSA:1.10.150.20 67 142 5.4E-30 T 15-10-2018 NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 SUPERFAMILY SSF50249 2 63 1.2E-17 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 SUPERFAMILY SSF46929 159 202 5.36E-10 T 15-10-2018 IPR036267 RuvA, C-terminal domain superfamily NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 SUPERFAMILY SSF47781 66 136 9.34E-23 T 15-10-2018 IPR010994 RuvA domain 2-like NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 Pfam PF01330 RuvA N terminal domain 2 62 2.0E-18 T 15-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 Pfam PF07499 RuvA, C-terminal domain 160 202 1.4E-14 T 15-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 Gene3D G3DSA:2.40.50.140 1 66 1.2E-25 T 15-10-2018 NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 SMART SM00278 108 127 0.15 T 15-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 SMART SM00278 73 92 0.054 T 15-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 Pfam PF14520 Helix-hairpin-helix domain 72 130 2.4E-17 T 15-10-2018 NJ56_15845 ff0614d10a73d45208530b9b797a1297 204 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 32.52 T 15-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 NJ56_10940 d07ff5f6c372a2095109e4024d540a9f 185 SMART SM00830 22 98 1.8E-11 T 15-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_10940 d07ff5f6c372a2095109e4024d540a9f 185 SUPERFAMILY SSF48600 28 176 3.21E-34 T 15-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_10940 d07ff5f6c372a2095109e4024d540a9f 185 PIRSF PIRSF026640 2 178 2.6E-51 T 15-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_10940 d07ff5f6c372a2095109e4024d540a9f 185 Gene3D G3DSA:1.20.140.170 25 178 3.1E-57 T 15-10-2018 NJ56_10940 d07ff5f6c372a2095109e4024d540a9f 185 Pfam PF01817 Chorismate mutase type II 30 96 3.2E-10 T 15-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_10940 d07ff5f6c372a2095109e4024d540a9f 185 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 28 133 8.2E-37 T 15-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 NJ56_16540 e2b3a06db5a7771459981b97f564a40a 317 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 3.9E-32 T 15-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 NJ56_16540 e2b3a06db5a7771459981b97f564a40a 317 Gene3D G3DSA:3.40.47.10 1 317 1.2E-123 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_16540 e2b3a06db5a7771459981b97f564a40a 317 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 317 70.102 T 15-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 NJ56_16540 e2b3a06db5a7771459981b97f564a40a 317 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 317 1.2E-143 T 15-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 NJ56_16540 e2b3a06db5a7771459981b97f564a40a 317 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 228 316 1.8E-35 T 15-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 NJ56_16540 e2b3a06db5a7771459981b97f564a40a 317 SUPERFAMILY SSF53901 4 317 8.65E-69 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_15825 87796b9e36648b70b3618921def3687e 252 SMART SM00382 29 199 9.5E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_15825 87796b9e36648b70b3618921def3687e 252 Gene3D G3DSA:3.40.50.300 1 240 1.6E-58 T 15-10-2018 NJ56_15825 87796b9e36648b70b3618921def3687e 252 Pfam PF00005 ABC transporter 20 149 5.1E-29 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_15825 87796b9e36648b70b3618921def3687e 252 SUPERFAMILY SSF52540 3 219 1.75E-53 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15675 c2be1b1b779fc5ff05b15423a396649f 397 SUPERFAMILY SSF103473 4 387 1.44E-60 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_15675 c2be1b1b779fc5ff05b15423a396649f 397 ProSitePatterns PS00216 Sugar transport proteins signature 1. 58 74 - T 15-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 NJ56_15675 c2be1b1b779fc5ff05b15423a396649f 397 Pfam PF07690 Major Facilitator Superfamily 10 351 2.5E-46 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_15675 c2be1b1b779fc5ff05b15423a396649f 397 Gene3D G3DSA:1.20.1720.10 4 383 3.3E-94 T 15-10-2018 NJ56_15675 c2be1b1b779fc5ff05b15423a396649f 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 3 378 3.5E-74 T 15-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 NJ56_15675 c2be1b1b779fc5ff05b15423a396649f 397 PRINTS PR01035 Tetracycline resistance protein signature 44 63 1.4E-7 T 15-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NJ56_15675 c2be1b1b779fc5ff05b15423a396649f 397 PRINTS PR01035 Tetracycline resistance protein signature 302 322 1.4E-7 T 15-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NJ56_15675 c2be1b1b779fc5ff05b15423a396649f 397 PRINTS PR01035 Tetracycline resistance protein signature 129 151 1.4E-7 T 15-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NJ56_15675 c2be1b1b779fc5ff05b15423a396649f 397 PRINTS PR01035 Tetracycline resistance protein signature 14 30 1.4E-7 T 15-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 487 544 2.1E-6 T 15-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 Pfam PF00460 Flagella basal body rod protein 6 35 6.6E-7 T 15-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 4 369 1.2E-76 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 PRINTS PR01005 Flagellar hook-associated protein signature 124 144 1.4E-78 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 PRINTS PR01005 Flagellar hook-associated protein signature 157 181 1.4E-78 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 PRINTS PR01005 Flagellar hook-associated protein signature 216 234 1.4E-78 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 PRINTS PR01005 Flagellar hook-associated protein signature 361 383 1.4E-78 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 PRINTS PR01005 Flagellar hook-associated protein signature 409 426 1.4E-78 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 PRINTS PR01005 Flagellar hook-associated protein signature 441 460 1.4E-78 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 PRINTS PR01005 Flagellar hook-associated protein signature 513 537 1.4E-78 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 PRINTS PR01005 Flagellar hook-associated protein signature 50 72 1.4E-78 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 PRINTS PR01005 Flagellar hook-associated protein signature 466 487 1.4E-78 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 PRINTS PR01005 Flagellar hook-associated protein signature 12 35 1.4E-78 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 PRINTS PR01005 Flagellar hook-associated protein signature 261 283 1.4E-78 T 15-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NJ56_12980 c26d40f8a2f0281c6babb8de28b2bf0d 547 SUPERFAMILY SSF64518 123 544 3.27E-42 T 15-10-2018 NJ56_12460 2fcb1586b4310202401d4cf5ea4f4826 163 Gene3D G3DSA:3.40.50.9200 48 145 5.1E-10 T 15-10-2018 IPR036490 Hypothetical protein MTH538 superfamily NJ56_12460 2fcb1586b4310202401d4cf5ea4f4826 163 SUPERFAMILY SSF52206 57 141 1.44E-19 T 15-10-2018 IPR036490 Hypothetical protein MTH538 superfamily NJ56_12460 2fcb1586b4310202401d4cf5ea4f4826 163 Pfam PF08937 MTH538 TIR-like domain (DUF1863) 7 126 1.8E-20 T 15-10-2018 IPR015032 MTH538 TIR-like domain NJ56_02385 67e56d9a6767955a7b086d291e50a238 223 Pfam PF04055 Radical SAM superfamily 26 123 1.5E-8 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_02385 67e56d9a6767955a7b086d291e50a238 223 Gene3D G3DSA:3.20.20.70 2 223 2.4E-55 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_02385 67e56d9a6767955a7b086d291e50a238 223 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 223 36.482 T 15-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 NJ56_02385 67e56d9a6767955a7b086d291e50a238 223 PIRSF PIRSF000370 1 223 1.2E-69 T 15-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 NJ56_02385 67e56d9a6767955a7b086d291e50a238 223 Pfam PF13394 4Fe-4S single cluster domain 24 128 1.8E-13 T 15-10-2018 NJ56_02385 67e56d9a6767955a7b086d291e50a238 223 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 9 223 8.0E-112 T 15-10-2018 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 NJ56_02385 67e56d9a6767955a7b086d291e50a238 223 SUPERFAMILY SSF102114 24 117 1.7E-6 T 15-10-2018 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 Hamap MF_00020 Acetate kinase [ackA]. 1 396 164.26 T 15-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 SUPERFAMILY SSF53067 153 392 3.7E-84 T 15-10-2018 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 PRINTS PR00471 Acetate kinase family signature 318 334 3.7E-46 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 PRINTS PR00471 Acetate kinase family signature 7 18 3.7E-46 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 PRINTS PR00471 Acetate kinase family signature 374 386 3.7E-46 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 PRINTS PR00471 Acetate kinase family signature 169 182 3.7E-46 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 PRINTS PR00471 Acetate kinase family signature 199 220 3.7E-46 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 PRINTS PR00471 Acetate kinase family signature 296 309 3.7E-46 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 TIGRFAM TIGR00016 ackA: acetate kinase 6 393 3.9E-154 T 15-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 Pfam PF00871 Acetokinase family 7 386 1.1E-149 T 15-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 Gene3D G3DSA:3.30.420.40 4 191 9.1E-71 T 15-10-2018 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 PIRSF PIRSF000722 3 397 1.9E-135 T 15-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 SUPERFAMILY SSF53067 6 191 7.45E-63 T 15-10-2018 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 Hamap MF_01881 Propionate kinase [tdcD]. 1 402 72.153 T 15-10-2018 IPR024917 Propionate kinase KEGG: 00640+2.7.2.15|MetaCyc: PWY-5437|MetaCyc: PWY-7013 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 199 216 - T 15-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 7 18 - T 15-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 NJ56_08980 4867ff232ade8b9177956e193ee885ba 406 Gene3D G3DSA:3.30.420.40 192 402 6.3E-79 T 15-10-2018 NJ56_06410 d79896375b0add50d955c6dff8dd80a0 270 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 237 6.0E-29 T 15-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 NJ56_06410 d79896375b0add50d955c6dff8dd80a0 270 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 15-10-2018 NJ56_06410 d79896375b0add50d955c6dff8dd80a0 270 SUPERFAMILY SSF56784 1 269 1.76E-78 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_06410 d79896375b0add50d955c6dff8dd80a0 270 ProSitePatterns PS01229 Hypothetical cof family signature 2. 218 240 - T 15-10-2018 NJ56_06410 d79896375b0add50d955c6dff8dd80a0 270 Gene3D G3DSA:3.40.50.1000 5 265 9.6E-95 T 15-10-2018 IPR023214 HAD superfamily NJ56_06410 d79896375b0add50d955c6dff8dd80a0 270 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 264 1.9E-68 T 15-10-2018 NJ56_06410 d79896375b0add50d955c6dff8dd80a0 270 Gene3D G3DSA:3.30.1240.10 87 193 9.6E-95 T 15-10-2018 NJ56_06410 d79896375b0add50d955c6dff8dd80a0 270 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 264 9.0E-69 T 15-10-2018 IPR000150 Cof family GO:0016787 NJ56_05740 8e501500a4c7344dbdd3ac584eaf5425 506 Hamap MF_00186 Glycerol kinase [glpK]. 9 503 59.758 T 15-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 NJ56_05740 8e501500a4c7344dbdd3ac584eaf5425 506 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 141 153 - T 15-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 NJ56_05740 8e501500a4c7344dbdd3ac584eaf5425 506 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 10 502 2.8E-229 T 15-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 NJ56_05740 8e501500a4c7344dbdd3ac584eaf5425 506 SUPERFAMILY SSF53067 10 261 6.11E-95 T 15-10-2018 NJ56_05740 8e501500a4c7344dbdd3ac584eaf5425 506 PIRSF PIRSF000538 9 506 2.6E-178 T 15-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 NJ56_05740 8e501500a4c7344dbdd3ac584eaf5425 506 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 267 456 2.1E-62 T 15-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 NJ56_05740 8e501500a4c7344dbdd3ac584eaf5425 506 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 11 258 8.4E-92 T 15-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 NJ56_05740 8e501500a4c7344dbdd3ac584eaf5425 506 Gene3D G3DSA:3.30.420.40 7 259 2.3E-115 T 15-10-2018 NJ56_05740 8e501500a4c7344dbdd3ac584eaf5425 506 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 368 388 - T 15-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 NJ56_05740 8e501500a4c7344dbdd3ac584eaf5425 506 Gene3D G3DSA:3.30.420.40 260 506 4.2E-96 T 15-10-2018 NJ56_05740 8e501500a4c7344dbdd3ac584eaf5425 506 SUPERFAMILY SSF53067 261 503 7.29E-87 T 15-10-2018 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 1.1E-290 T 15-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 Gene3D G3DSA:2.60.34.10 383 523 7.6E-67 T 15-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 15-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 SUPERFAMILY SSF100934 507 604 3.14E-16 T 15-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 SUPERFAMILY SSF53067 4 183 2.7E-66 T 15-10-2018 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 Gene3D G3DSA:3.90.640.10 229 316 2.8E-171 T 15-10-2018 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 631 36.847 T 15-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 Pfam PF00012 Hsp70 protein 4 602 1.6E-265 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 Gene3D G3DSA:1.20.1270.10 524 603 8.3E-29 T 15-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 SUPERFAMILY SSF53067 187 382 1.23E-67 T 15-10-2018 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 Gene3D G3DSA:3.30.420.40 5 379 2.8E-171 T 15-10-2018 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 Gene3D G3DSA:3.30.420.40 180 366 2.8E-171 T 15-10-2018 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 15-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 15-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 SUPERFAMILY SSF100920 384 540 1.12E-60 T 15-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 PRINTS PR00301 70kDa heat shock protein signature 138 158 2.9E-79 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 PRINTS PR00301 70kDa heat shock protein signature 334 350 2.9E-79 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 PRINTS PR00301 70kDa heat shock protein signature 31 43 2.9E-79 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 PRINTS PR00301 70kDa heat shock protein signature 198 208 2.9E-79 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 PRINTS PR00301 70kDa heat shock protein signature 3 16 2.9E-79 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 PRINTS PR00301 70kDa heat shock protein signature 469 485 2.9E-79 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 PRINTS PR00301 70kDa heat shock protein signature 54 62 2.9E-79 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 PRINTS PR00301 70kDa heat shock protein signature 388 407 2.9E-79 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_03000 6d27ed9be0b345fcb3f13322d31b4030 635 PRINTS PR00301 70kDa heat shock protein signature 365 385 2.9E-79 T 15-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 NJ56_17080 1f0d046e1636da45031c092bc0f0ac36 336 SUPERFAMILY SSF51735 1 332 1.62E-61 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_17080 1f0d046e1636da45031c092bc0f0ac36 336 Gene3D G3DSA:3.40.50.720 1 332 9.8E-61 T 15-10-2018 NJ56_17080 1f0d046e1636da45031c092bc0f0ac36 336 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 232 1.0E-29 T 15-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 NJ56_12010 20a21c3f457571a3b48508557b491e02 272 Pfam PF03589 Antitermination protein 178 263 3.6E-24 T 15-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 NJ56_12010 20a21c3f457571a3b48508557b491e02 272 Pfam PF03589 Antitermination protein 23 109 4.4E-25 T 15-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 NJ56_12010 20a21c3f457571a3b48508557b491e02 272 Gene3D G3DSA:3.30.260.20 154 272 1.3E-41 T 15-10-2018 NJ56_12010 20a21c3f457571a3b48508557b491e02 272 Gene3D G3DSA:3.30.260.20 62 140 2.6E-16 T 15-10-2018 NJ56_12010 20a21c3f457571a3b48508557b491e02 272 SUPERFAMILY SSF57938 169 220 2.22E-6 T 15-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily NJ56_00270 f6583f67415625cb4fe8e724f53febc1 267 Gene3D G3DSA:1.20.5.110 35 114 5.3E-33 T 15-10-2018 NJ56_00270 f6583f67415625cb4fe8e724f53febc1 267 Gene3D G3DSA:1.25.40.10 147 267 2.6E-32 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_00270 f6583f67415625cb4fe8e724f53febc1 267 Pfam PF16331 TolA binding protein trimerisation 37 110 2.0E-24 T 15-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 NJ56_00270 f6583f67415625cb4fe8e724f53febc1 267 Pfam PF13174 Tetratricopeptide repeat 222 254 9.6E-8 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_00270 f6583f67415625cb4fe8e724f53febc1 267 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 6 267 20.381 T 15-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 NJ56_00270 f6583f67415625cb4fe8e724f53febc1 267 SUPERFAMILY SSF48452 156 260 5.69E-16 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_00270 f6583f67415625cb4fe8e724f53febc1 267 Pfam PF13432 Tetratricopeptide repeat 154 218 3.0E-10 T 15-10-2018 NJ56_00270 f6583f67415625cb4fe8e724f53febc1 267 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 147 264 6.8E-44 T 15-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 9.7E-18 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 SMART SM00382 348 492 6.2E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 SUPERFAMILY SSF54211 595 771 9.86E-58 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 Gene3D G3DSA:3.30.230.10 585 772 7.1E-86 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 201 4.5E-44 T 15-10-2018 IPR003111 Lon, substrate-binding domain NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 Hamap MF_01973 Lon protease [lon]. 11 772 72.161 T 15-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 Gene3D G3DSA:1.20.58.1480 120 245 3.0E-47 T 15-10-2018 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 Gene3D G3DSA:3.40.50.300 314 490 4.9E-61 T 15-10-2018 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 Gene3D G3DSA:1.10.8.60 491 584 1.4E-32 T 15-10-2018 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 1.7E-56 T 15-10-2018 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 1.7E-56 T 15-10-2018 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 1.7E-56 T 15-10-2018 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 1.7E-56 T 15-10-2018 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 1.7E-56 T 15-10-2018 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 SUPERFAMILY SSF52540 313 586 3.42E-51 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 PIRSF PIRSF001174 1 775 0.0 T 15-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 TIGRFAM TIGR00763 lon: endopeptidase La 12 770 0.0 T 15-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 15-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 SUPERFAMILY SSF88697 10 201 1.44E-52 T 15-10-2018 IPR015947 PUA-like superfamily NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 2.6E-95 T 15-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 Gene3D G3DSA:2.30.130.40 1 118 2.1E-38 T 15-10-2018 NJ56_01370 4a72aeaa24240c46ddf6a0a4387c207c 784 SMART SM00464 10 202 4.7E-84 T 15-10-2018 IPR003111 Lon, substrate-binding domain NJ56_10830 9c0ae5ab6b35490d59280d73c8b77519 213 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 191 3.1E-79 T 15-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 NJ56_10830 9c0ae5ab6b35490d59280d73c8b77519 213 Pfam PF00551 Formyl transferase 2 182 4.7E-65 T 15-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_10830 9c0ae5ab6b35490d59280d73c8b77519 213 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 15-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_10830 9c0ae5ab6b35490d59280d73c8b77519 213 SUPERFAMILY SSF53328 2 199 2.09E-66 T 15-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_10830 9c0ae5ab6b35490d59280d73c8b77519 213 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 31.28 T 15-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 NJ56_10830 9c0ae5ab6b35490d59280d73c8b77519 213 Gene3D G3DSA:3.40.50.170 2 213 5.3E-87 T 15-10-2018 NJ56_15385 e3843ce8bb18e3bcf851e1be20f9c112 838 Pfam PF00577 Outer membrane usher protein 192 748 6.3E-177 T 15-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 NJ56_15385 e3843ce8bb18e3bcf851e1be20f9c112 838 Gene3D G3DSA:2.60.40.3110 261 350 1.3E-33 T 15-10-2018 NJ56_15385 e3843ce8bb18e3bcf851e1be20f9c112 838 Gene3D G3DSA:2.60.40.2070 754 838 2.5E-27 T 15-10-2018 NJ56_15385 e3843ce8bb18e3bcf851e1be20f9c112 838 Pfam PF13954 PapC N-terminal domain 24 173 2.3E-36 T 15-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 NJ56_15385 e3843ce8bb18e3bcf851e1be20f9c112 838 SUPERFAMILY SSF141729 42 165 5.23E-28 T 15-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 NJ56_15385 e3843ce8bb18e3bcf851e1be20f9c112 838 Pfam PF13953 PapC C-terminal domain 757 823 6.1E-22 T 15-10-2018 IPR025949 PapC-like, C-terminal domain NJ56_15385 e3843ce8bb18e3bcf851e1be20f9c112 838 Gene3D G3DSA:3.10.20.410 35 162 4.3E-38 T 15-10-2018 NJ56_15385 e3843ce8bb18e3bcf851e1be20f9c112 838 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 303 313 - T 15-10-2018 IPR018030 Fimbrial membrane usher, conserved site NJ56_15385 e3843ce8bb18e3bcf851e1be20f9c112 838 Gene3D G3DSA:2.60.40.2610 663 753 6.3E-32 T 15-10-2018 NJ56_11460 44367893654499dc49e37b7ae10bea45 345 PIRSF PIRSF020588 1 344 2.8E-145 T 15-10-2018 IPR023597 Flagellar regulator Flk GO:0010468|GO:0031224 NJ56_07430 5fc62e37e85717771e2c40cada61d5f8 101 Gene3D G3DSA:4.10.830.10 41 101 2.7E-23 T 15-10-2018 NJ56_07430 5fc62e37e85717771e2c40cada61d5f8 101 SUPERFAMILY SSF57716 2 101 1.35E-36 T 15-10-2018 NJ56_07430 5fc62e37e85717771e2c40cada61d5f8 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 15-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07430 5fc62e37e85717771e2c40cada61d5f8 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.761 T 15-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid NJ56_07430 5fc62e37e85717771e2c40cada61d5f8 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 4.9E-26 T 15-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_04925 bcc49bb291e68626cad70df7b44fde1c 87 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 1.9E-20 T 15-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 NJ56_04925 bcc49bb291e68626cad70df7b44fde1c 87 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 82 23.185 T 15-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 NJ56_04925 bcc49bb291e68626cad70df7b44fde1c 87 Pfam PF02416 mttA/Hcf106 family 4 56 7.8E-13 T 15-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 Pfam PF00890 FAD binding domain 22 404 1.5E-99 T 15-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 SUPERFAMILY SSF46977 437 537 1.44E-31 T 15-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 SUPERFAMILY SSF51905 15 459 6.48E-71 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 Gene3D G3DSA:1.20.58.100 437 545 1.0E-45 T 15-10-2018 NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 367 389 6.9E-10 T 15-10-2018 NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 23 42 6.9E-10 T 15-10-2018 NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 PIRSF PIRSF000171 351 543 1.9E-13 T 15-10-2018 NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 PIRSF PIRSF000171 12 262 6.9E-22 T 15-10-2018 NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 Gene3D G3DSA:3.50.50.60 22 416 5.4E-153 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 SUPERFAMILY SSF56425 250 365 1.64E-41 T 15-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 21 532 1.2E-222 T 15-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 Gene3D G3DSA:3.90.700.10 260 370 5.4E-153 T 15-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_10325 cbc3ef8e38350a41ff5ed2f136ef5151 545 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 534 1.4E-14 T 15-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_01215 2685853b9a47d7c430813f3077aa01ae 504 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 440 1.6E-146 T 15-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane NJ56_11120 cfda17c44e9538d6d3d9a4994809b5c4 277 SUPERFAMILY SSF161098 17 265 3.27E-57 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_11120 cfda17c44e9538d6d3d9a4994809b5c4 277 Gene3D G3DSA:1.10.3720.10 14 272 3.4E-69 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_11120 cfda17c44e9538d6d3d9a4994809b5c4 277 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 6 269 7.5E-113 T 15-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 NJ56_11120 cfda17c44e9538d6d3d9a4994809b5c4 277 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 9 270 4.4E-114 T 15-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 NJ56_11120 cfda17c44e9538d6d3d9a4994809b5c4 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 274 7.0E-32 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_01755 823251dd478fe7c937060ba882f8b1c4 447 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 447 1.8E-183 T 15-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 NJ56_01755 823251dd478fe7c937060ba882f8b1c4 447 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 447 46.908 T 15-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 NJ56_01755 823251dd478fe7c937060ba882f8b1c4 447 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 257 6.1E-115 T 15-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 NJ56_01755 823251dd478fe7c937060ba882f8b1c4 447 Pfam PF11973 NQRA C-terminal domain 262 310 3.3E-22 T 15-10-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 NJ56_18070 09d94954941f0c8658320cc49b7ee88a 653 Pfam PF02195 ParB-like nuclease domain 41 134 2.7E-6 T 15-10-2018 IPR003115 ParB/Sulfiredoxin NJ56_18070 09d94954941f0c8658320cc49b7ee88a 653 SMART SM00470 38 135 0.0019 T 15-10-2018 IPR003115 ParB/Sulfiredoxin NJ56_18070 09d94954941f0c8658320cc49b7ee88a 653 SUPERFAMILY SSF109709 128 220 4.32E-18 T 15-10-2018 NJ56_18070 09d94954941f0c8658320cc49b7ee88a 653 Gene3D G3DSA:1.10.10.2830 124 227 5.8E-15 T 15-10-2018 NJ56_18070 09d94954941f0c8658320cc49b7ee88a 653 Gene3D G3DSA:3.90.1530.30 56 109 1.2E-5 T 15-10-2018 NJ56_18070 09d94954941f0c8658320cc49b7ee88a 653 SUPERFAMILY SSF110849 39 136 9.24E-8 T 15-10-2018 IPR036086 ParB/Sulfiredoxin superfamily NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 SUPERFAMILY SSF50447 245 333 1.04E-23 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 86 101 - T 15-10-2018 IPR031157 Tr-type G domain, conserved site NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 22 478 53.329 T 15-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 PRINTS PR00315 GTP-binding elongation factor signature 166 175 8.4E-14 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 PRINTS PR00315 GTP-binding elongation factor signature 113 123 8.4E-14 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 PRINTS PR00315 GTP-binding elongation factor signature 129 140 8.4E-14 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 PRINTS PR00315 GTP-binding elongation factor signature 32 45 8.4E-14 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 PRINTS PR00315 GTP-binding elongation factor signature 93 101 8.4E-14 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 Gene3D G3DSA:2.40.30.10 335 437 7.7E-29 T 15-10-2018 NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 SUPERFAMILY SSF52540 24 238 1.08E-58 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 Pfam PF00009 Elongation factor Tu GTP binding domain 29 230 1.1E-44 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 37 218 1.4E-17 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 Gene3D G3DSA:2.40.30.10 245 332 6.0E-25 T 15-10-2018 NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 31 437 1.3E-203 T 15-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 SUPERFAMILY SSF50465 337 438 5.76E-29 T 15-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal NJ56_02335 dab19e7c46ef76711fca9e922b001571 478 Gene3D G3DSA:3.40.50.300 10 243 2.4E-72 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:1.10.1200.10 984 1069 2.0E-18 T 15-10-2018 IPR036736 ACP-like superfamily NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:3.40.50.1820 2053 2377 2.4E-104 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:3.30.559.30 1278 1523 2.3E-97 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SUPERFAMILY SSF56801 1520 2075 1.07E-155 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Pfam PF13193 AMP-binding enzyme C-terminal domain 895 972 8.7E-10 T 15-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Pfam PF13193 AMP-binding enzyme C-terminal domain 1954 2037 5.8E-8 T 15-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:3.30.559.10 1101 1461 2.3E-97 T 15-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:3.30.300.30 880 983 6.4E-29 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 ProSitePatterns PS00455 Putative AMP-binding domain signature. 632 643 - T 15-10-2018 IPR020845 AMP-binding, conserved site NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Pfam PF00550 Phosphopantetheine attachment site 1000 1061 1.2E-10 T 15-10-2018 IPR009081 Phosphopantetheine binding ACP domain NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Pfam PF00550 Phosphopantetheine attachment site 2064 2127 2.3E-10 T 15-10-2018 IPR009081 Phosphopantetheine binding ACP domain NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Pfam PF00501 AMP-binding enzyme 492 887 3.4E-90 T 15-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Pfam PF00501 AMP-binding enzyme 1546 1946 1.2E-100 T 15-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1685 1696 - T 15-10-2018 IPR020845 AMP-binding, conserved site NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:3.30.559.10 19 230 3.5E-38 T 15-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SUPERFAMILY SSF56801 451 1010 1.83E-139 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Pfam PF00668 Condensation domain 1094 1526 6.6E-67 T 15-10-2018 IPR001242 Condensation domain NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Pfam PF00668 Condensation domain 14 469 3.3E-53 T 15-10-2018 IPR001242 Condensation domain NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:3.30.559.30 238 495 4.4E-48 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:3.40.50.980 497 795 1.5E-86 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SMART SM00824 Thioesterase 2156 2372 4.5E-6 T 15-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:3.40.50.12780 1537 1938 2.2E-137 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:2.30.38.10 802 877 3.8E-31 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SUPERFAMILY SSF52777 21 207 3.11E-21 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SUPERFAMILY SSF52777 215 453 6.11E-30 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Pfam PF00975 Thioesterase domain 2154 2361 1.4E-30 T 15-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SUPERFAMILY SSF53474 2140 2376 3.73E-48 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2086 2101 - T 15-10-2018 IPR006162 Phosphopantetheine attachment site NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SUPERFAMILY SSF52777 1278 1510 2.67E-43 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SUPERFAMILY SSF47336 2056 2128 2.59E-13 T 15-10-2018 IPR036736 ACP-like superfamily NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:3.30.300.30 1940 2052 5.0E-32 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1567 1970 2.1E-128 T 15-10-2018 IPR010071 Amino acid adenylation domain NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 512 911 2.3E-115 T 15-10-2018 IPR010071 Amino acid adenylation domain NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 Gene3D G3DSA:3.40.50.980 513 647 1.5E-86 T 15-10-2018 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SMART SM00823 Phosphopantetheine attachment site 997 1065 0.016 T 15-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SMART SM00823 Phosphopantetheine attachment site 2062 2131 0.046 T 15-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SUPERFAMILY SSF47336 991 1061 9.36E-14 T 15-10-2018 IPR036736 ACP-like superfamily NJ56_08910 b0bfce78b0e5a99c96b9d8f51b0ca9b0 2386 SUPERFAMILY SSF52777 1092 1292 1.22E-27 T 15-10-2018 NJ56_15960 5e006f81effc2386bf966fe8729a6a06 188 Pfam PF02613 Nitrate reductase delta subunit 50 147 5.2E-11 T 15-10-2018 IPR020945 DMSO/Nitrate reductase chaperone NJ56_15960 5e006f81effc2386bf966fe8729a6a06 188 SUPERFAMILY SSF89155 2 180 2.09E-45 T 15-10-2018 IPR036411 TorD-like superfamily NJ56_15960 5e006f81effc2386bf966fe8729a6a06 188 PIRSF PIRSF004690 1 187 4.1E-61 T 15-10-2018 IPR026269 Tat proofreading chaperone DmsD-type NJ56_15960 5e006f81effc2386bf966fe8729a6a06 188 Gene3D G3DSA:1.10.3480.10 1 186 2.1E-30 T 15-10-2018 NJ56_05545 0cba4dc8cda4ddc16994bccb59397231 367 SUPERFAMILY SSF53335 7 365 8.36E-55 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_05545 0cba4dc8cda4ddc16994bccb59397231 367 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 299 328 - T 15-10-2018 IPR030390 RNA methyltransferase TrmA, active site NJ56_05545 0cba4dc8cda4ddc16994bccb59397231 367 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 366 42.606 T 15-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 NJ56_05545 0cba4dc8cda4ddc16994bccb59397231 367 Gene3D G3DSA:3.40.1350.30 45 189 3.5E-144 T 15-10-2018 NJ56_05545 0cba4dc8cda4ddc16994bccb59397231 367 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 348 358 - T 15-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site NJ56_05545 0cba4dc8cda4ddc16994bccb59397231 367 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 10 366 3.5E-187 T 15-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 NJ56_05545 0cba4dc8cda4ddc16994bccb59397231 367 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 10 366 1.4E-191 T 15-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 NJ56_05545 0cba4dc8cda4ddc16994bccb59397231 367 Gene3D G3DSA:3.40.50.150 14 362 3.5E-144 T 15-10-2018 NJ56_11275 221dc05126e977020038bec3019058f5 245 SMART SM00850 146 244 1.0E-34 T 15-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 NJ56_11275 221dc05126e977020038bec3019058f5 245 Pfam PF00072 Response regulator receiver domain 4 112 3.3E-23 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_11275 221dc05126e977020038bec3019058f5 245 SUPERFAMILY SSF52172 2 150 1.85E-27 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_11275 221dc05126e977020038bec3019058f5 245 Gene3D G3DSA:2.40.50.40 138 206 5.7E-18 T 15-10-2018 NJ56_11275 221dc05126e977020038bec3019058f5 245 SMART SM00448 1 112 1.1E-21 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_11275 221dc05126e977020038bec3019058f5 245 Pfam PF04397 LytTr DNA-binding domain 147 243 2.6E-30 T 15-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 NJ56_11275 221dc05126e977020038bec3019058f5 245 Gene3D G3DSA:3.40.50.2300 1 132 1.9E-29 T 15-10-2018 NJ56_14955 82822344a0f314dce917db89c169f67a 320 SUPERFAMILY SSF52402 4 153 5.86E-28 T 15-10-2018 NJ56_14955 82822344a0f314dce917db89c169f67a 320 SUPERFAMILY SSF52402 156 307 5.02E-23 T 15-10-2018 NJ56_14955 82822344a0f314dce917db89c169f67a 320 Gene3D G3DSA:3.40.50.12370 1 315 1.3E-130 T 15-10-2018 NJ56_14955 82822344a0f314dce917db89c169f67a 320 Pfam PF00582 Universal stress protein family 176 300 9.8E-12 T 15-10-2018 IPR006016 UspA NJ56_14955 82822344a0f314dce917db89c169f67a 320 Pfam PF00582 Universal stress protein family 4 146 3.2E-18 T 15-10-2018 IPR006016 UspA NJ56_00695 7ed6d5a6486e6108601bda3e17171236 87 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 1 87 26.956 T 15-10-2018 IPR007454 Uncharacterised protein family UPF0250 NJ56_00695 7ed6d5a6486e6108601bda3e17171236 87 Pfam PF04359 Protein of unknown function (DUF493) 7 87 2.1E-30 T 15-10-2018 IPR007454 Uncharacterised protein family UPF0250 NJ56_00695 7ed6d5a6486e6108601bda3e17171236 87 Gene3D G3DSA:3.30.70.260 1 87 7.1E-35 T 15-10-2018 NJ56_00695 7ed6d5a6486e6108601bda3e17171236 87 SUPERFAMILY SSF117991 1 87 7.85E-32 T 15-10-2018 IPR027471 YbeD-like domain superfamily NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 Gene3D G3DSA:3.40.50.720 1 180 1.4E-57 T 15-10-2018 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 469 8.8E-229 T 15-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 Gene3D G3DSA:1.20.5.320 436 469 1.1E-21 T 15-10-2018 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 174 6.1E-52 T 15-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 SUPERFAMILY SSF48179 177 468 5.05E-132 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 357 379 1.5E-89 T 15-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 1.5E-89 T 15-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 1.5E-89 T 15-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 1.5E-89 T 15-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 1.5E-89 T 15-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 1.5E-89 T 15-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 SMART SM01350 179 468 1.0E-223 T 15-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 15-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 Gene3D G3DSA:1.10.1040.10 181 435 2.9E-111 T 15-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 PIRSF PIRSF000109 1 469 4.6E-242 T 15-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 SUPERFAMILY SSF51735 4 172 1.29E-51 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_17275 db364aa43b1a21e65421d53041aa25b5 469 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 467 7.0E-134 T 15-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 NJ56_04970 66ad59e740ca244c526e41570698b81d 280 Pfam PF01738 Dienelactone hydrolase family 50 272 1.4E-73 T 15-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 NJ56_04970 66ad59e740ca244c526e41570698b81d 280 Gene3D G3DSA:3.40.50.1820 33 272 3.5E-76 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_04970 66ad59e740ca244c526e41570698b81d 280 SUPERFAMILY SSF53474 38 272 2.22E-50 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 2 466 66.606 T 15-10-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 SUPERFAMILY SSF55424 344 463 2.41E-30 T 15-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 Gene3D G3DSA:3.50.50.60 158 276 9.5E-95 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PIRSF PIRSF000350 1 463 1.2E-71 T 15-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 4.8E-28 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 4.8E-28 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 4.8E-28 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 4.8E-28 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 4.8E-28 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 3.3E-52 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 3.3E-52 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 3.3E-52 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 3.3E-52 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 3.3E-52 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 3.3E-52 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 3.3E-52 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 3.3E-52 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 3.3E-52 T 15-10-2018 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 326 2.0E-59 T 15-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 Gene3D G3DSA:3.30.390.30 345 464 6.1E-32 T 15-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 SUPERFAMILY SSF51905 1 322 3.46E-58 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 457 6.2E-30 T 15-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NJ56_05560 3296cf5472e8fad52a8671e0ea0c4529 466 Gene3D G3DSA:3.50.50.60 7 332 9.5E-95 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_10590 99eacbb90363b437974d3ab07d00f160 815 SUPERFAMILY SSF49695 107 209 9.19E-15 T 15-10-2018 IPR011024 Gamma-crystallin-like NJ56_10590 99eacbb90363b437974d3ab07d00f160 815 SUPERFAMILY SSF49695 18 111 4.91E-14 T 15-10-2018 IPR011024 Gamma-crystallin-like NJ56_10590 99eacbb90363b437974d3ab07d00f160 815 Gene3D G3DSA:2.60.20.10 9 114 9.5E-21 T 15-10-2018 NJ56_10590 99eacbb90363b437974d3ab07d00f160 815 Gene3D G3DSA:2.60.20.10 115 210 7.0E-20 T 15-10-2018 NJ56_10590 99eacbb90363b437974d3ab07d00f160 815 Pfam PF03995 Peptidase inhibitor family I36 27 82 2.5E-5 T 15-10-2018 NJ56_08950 8e8529ff364cd14972c477b10f92b8d4 544 ProSitePatterns PS00455 Putative AMP-binding domain signature. 192 203 - T 15-10-2018 IPR020845 AMP-binding, conserved site NJ56_08950 8e8529ff364cd14972c477b10f92b8d4 544 Gene3D G3DSA:3.40.50.12780 2 435 3.2E-132 T 15-10-2018 NJ56_08950 8e8529ff364cd14972c477b10f92b8d4 544 SUPERFAMILY SSF56801 7 536 2.09E-129 T 15-10-2018 NJ56_08950 8e8529ff364cd14972c477b10f92b8d4 544 Pfam PF13193 AMP-binding enzyme C-terminal domain 450 525 1.4E-10 T 15-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain NJ56_08950 8e8529ff364cd14972c477b10f92b8d4 544 TIGRFAM TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase 3 532 1.6E-266 T 15-10-2018 IPR011963 2,3-dihydroxybenzoate-AMP ligase GO:0008668|GO:0019290 NJ56_08950 8e8529ff364cd14972c477b10f92b8d4 544 Pfam PF00501 AMP-binding enzyme 32 441 8.5E-81 T 15-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 NJ56_08950 8e8529ff364cd14972c477b10f92b8d4 544 Gene3D G3DSA:3.30.300.310 437 541 7.0E-29 T 15-10-2018 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 SUPERFAMILY SSF51735 6 169 3.2E-69 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 151 158 - T 15-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 SUPERFAMILY SSF55347 152 315 4.46E-81 T 15-10-2018 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 PIRSF PIRSF000149 4 334 4.7E-135 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 6 105 7.6E-41 T 15-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 1.1E-46 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 1.1E-46 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 271 286 1.1E-46 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 1.1E-46 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 1.1E-46 T 15-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 158 315 2.8E-71 T 15-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 SMART SM00846 6 153 4.6E-98 T 15-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 Gene3D G3DSA:3.40.50.720 7 329 1.5E-158 T 15-10-2018 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 Gene3D G3DSA:3.30.360.10 152 317 1.5E-158 T 15-10-2018 NJ56_15610 79546e352b00795e2691a3ad8df3e51b 334 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 7 327 1.9E-137 T 15-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 Gene3D G3DSA:3.30.379.10 209 335 4.1E-27 T 15-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 PRINTS PR00738 Glycosyl hydrolase family 20 signature 361 382 1.8E-42 T 15-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 PRINTS PR00738 Glycosyl hydrolase family 20 signature 751 768 1.8E-42 T 15-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 PRINTS PR00738 Glycosyl hydrolase family 20 signature 505 523 1.8E-42 T 15-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 PRINTS PR00738 Glycosyl hydrolase family 20 signature 532 545 1.8E-42 T 15-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 PRINTS PR00738 Glycosyl hydrolase family 20 signature 733 749 1.8E-42 T 15-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 PRINTS PR00738 Glycosyl hydrolase family 20 signature 298 318 1.8E-42 T 15-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 PRINTS PR00738 Glycosyl hydrolase family 20 signature 332 349 1.8E-42 T 15-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 PRINTS PR00738 Glycosyl hydrolase family 20 signature 438 455 1.8E-42 T 15-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 SUPERFAMILY SSF49384 29 199 6.91E-65 T 15-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 SUPERFAMILY SSF55545 207 337 4.97E-30 T 15-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 SMART SM01081 36 197 6.6E-92 T 15-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 Gene3D G3DSA:2.60.40.10 824 889 3.3E-28 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 Gene3D G3DSA:2.60.40.290 28 169 6.5E-60 T 15-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 SUPERFAMILY SSF81296 786 888 8.4E-39 T 15-10-2018 IPR014756 Immunoglobulin E-set NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 SUPERFAMILY SSF51445 338 778 5.05E-137 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 Pfam PF03174 Chitobiase/beta-hexosaminidase C-terminal domain 810 885 5.2E-32 T 15-10-2018 IPR004867 Chitobiase C-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 216 334 1.3E-17 T 15-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 338 769 5.3E-109 T 15-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 Gene3D G3DSA:3.20.20.80 336 823 2.5E-163 T 15-10-2018 NJ56_00505 0f39ca78941eede601585970d47f5aa3 893 Pfam PF03173 Putative carbohydrate binding domain 37 196 8.3E-67 T 15-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 NJ56_15070 1a1a86080f906ef198a6ea7a1e628e28 435 Hamap MF_01203 Voltage-gated ClC-type chloride channel ClcB [clcB]. 16 426 37.897 T 15-10-2018 IPR023790 Chloride channel, voltage-gated, ClcB GO:0006821|GO:0010447 NJ56_15070 1a1a86080f906ef198a6ea7a1e628e28 435 SUPERFAMILY SSF81340 5 426 2.49E-88 T 15-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 NJ56_15070 1a1a86080f906ef198a6ea7a1e628e28 435 PRINTS PR00762 Chloride channel signature 116 135 7.2E-24 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_15070 1a1a86080f906ef198a6ea7a1e628e28 435 PRINTS PR00762 Chloride channel signature 383 402 7.2E-24 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_15070 1a1a86080f906ef198a6ea7a1e628e28 435 PRINTS PR00762 Chloride channel signature 365 381 7.2E-24 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_15070 1a1a86080f906ef198a6ea7a1e628e28 435 PRINTS PR00762 Chloride channel signature 330 350 7.2E-24 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_15070 1a1a86080f906ef198a6ea7a1e628e28 435 PRINTS PR00762 Chloride channel signature 166 185 7.2E-24 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_15070 1a1a86080f906ef198a6ea7a1e628e28 435 Gene3D G3DSA:1.10.3080.10 8 434 1.9E-78 T 15-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 NJ56_15070 1a1a86080f906ef198a6ea7a1e628e28 435 Pfam PF00654 Voltage gated chloride channel 79 416 2.0E-77 T 15-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 NJ56_08885 174579f5dd83b1a122ab86b029b22b79 187 Pfam PF00486 Transcriptional regulatory protein, C terminal 33 101 1.3E-5 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_08885 174579f5dd83b1a122ab86b029b22b79 187 SUPERFAMILY SSF46894 24 101 1.45E-7 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_08885 174579f5dd83b1a122ab86b029b22b79 187 Gene3D G3DSA:1.10.10.10 2 105 1.8E-7 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_15045 0f5943c8feda986d188006550506aa7f 260 SUPERFAMILY SSF55846 8 179 2.09E-43 T 15-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_15045 0f5943c8feda986d188006550506aa7f 260 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 22 163 1.8E-23 T 15-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_15045 0f5943c8feda986d188006550506aa7f 260 Gene3D G3DSA:1.10.101.10 178 258 1.0E-25 T 15-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 NJ56_15045 0f5943c8feda986d188006550506aa7f 260 SUPERFAMILY SSF47090 179 258 4.39E-19 T 15-10-2018 IPR036365 PGBD-like superfamily NJ56_15045 0f5943c8feda986d188006550506aa7f 260 Gene3D G3DSA:3.40.80.10 22 177 2.3E-46 T 15-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_15045 0f5943c8feda986d188006550506aa7f 260 SMART SM00644 12 163 1.9E-28 T 15-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 NJ56_12070 4a117db10d9d4d3fd452efad53c1ff15 409 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 36 379 4.1E-101 T 15-10-2018 IPR006427 Phage portal protein, HK97 NJ56_12070 4a117db10d9d4d3fd452efad53c1ff15 409 Pfam PF04860 Phage portal protein 46 373 1.0E-93 T 15-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein NJ56_14560 1296680040105173299f8fc23fa2feb4 135 Gene3D G3DSA:3.10.180.10 1 131 8.3E-50 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_14560 1296680040105173299f8fc23fa2feb4 135 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 15-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 NJ56_14560 1296680040105173299f8fc23fa2feb4 135 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 132 9.2E-66 T 15-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 NJ56_14560 1296680040105173299f8fc23fa2feb4 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 7.0E-26 T 15-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NJ56_14560 1296680040105173299f8fc23fa2feb4 135 SUPERFAMILY SSF54593 1 127 4.16E-35 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_08400 bb15c38f80e6ae04724dfe27bf00a8f6 434 Pfam PF07690 Major Facilitator Superfamily 17 309 7.0E-47 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_08400 bb15c38f80e6ae04724dfe27bf00a8f6 434 SUPERFAMILY SSF103473 4 413 1.96E-79 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_08400 bb15c38f80e6ae04724dfe27bf00a8f6 434 Gene3D G3DSA:1.20.1250.20 1 199 7.4E-46 T 15-10-2018 NJ56_08400 bb15c38f80e6ae04724dfe27bf00a8f6 434 Gene3D G3DSA:1.20.1250.20 215 420 2.8E-27 T 15-10-2018 NJ56_06945 f7f051b89ecac5c3db3f3fcd118d5230 109 SUPERFAMILY SSF52821 2 101 9.3E-29 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_06945 f7f051b89ecac5c3db3f3fcd118d5230 109 Gene3D G3DSA:3.40.250.10 1 108 7.9E-29 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_06945 f7f051b89ecac5c3db3f3fcd118d5230 109 SMART SM00450 7 102 1.1E-18 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_06945 f7f051b89ecac5c3db3f3fcd118d5230 109 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 105 31.648 T 15-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 NJ56_06945 f7f051b89ecac5c3db3f3fcd118d5230 109 Pfam PF00581 Rhodanese-like domain 17 98 2.9E-14 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_04685 eaa3426fd876b6863a8e18988ab97189 217 Pfam PF07356 Protein of unknown function (DUF1481) 28 213 3.9E-67 T 15-10-2018 IPR010858 Protein of unknown function DUF1481 NJ56_00150 33c3781ebcd4876badc4a0abfcb885bb 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 221 243 - T 15-10-2018 NJ56_00150 33c3781ebcd4876badc4a0abfcb885bb 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 240 5.6E-24 T 15-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 NJ56_00150 33c3781ebcd4876badc4a0abfcb885bb 273 Gene3D G3DSA:3.40.50.1000 5 267 8.9E-60 T 15-10-2018 IPR023214 HAD superfamily NJ56_00150 33c3781ebcd4876badc4a0abfcb885bb 273 Gene3D G3DSA:3.30.1240.10 84 196 8.9E-60 T 15-10-2018 NJ56_00150 33c3781ebcd4876badc4a0abfcb885bb 273 SUPERFAMILY SSF56784 1 271 5.35E-66 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_00150 33c3781ebcd4876badc4a0abfcb885bb 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 267 1.8E-61 T 15-10-2018 NJ56_00150 33c3781ebcd4876badc4a0abfcb885bb 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 267 8.3E-64 T 15-10-2018 IPR000150 Cof family GO:0016787 NJ56_00150 33c3781ebcd4876badc4a0abfcb885bb 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 221 240 2.0E-5 T 15-10-2018 NJ56_00150 33c3781ebcd4876badc4a0abfcb885bb 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 244 256 2.0E-5 T 15-10-2018 NJ56_00150 33c3781ebcd4876badc4a0abfcb885bb 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 7 21 2.0E-5 T 15-10-2018 NJ56_07235 c45966bcd2f86bc79b84c6753d781b64 313 Gene3D G3DSA:3.40.50.1100 39 141 9.3E-79 T 15-10-2018 NJ56_07235 c45966bcd2f86bc79b84c6753d781b64 313 SUPERFAMILY SSF53686 5 302 2.49E-69 T 15-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NJ56_07235 c45966bcd2f86bc79b84c6753d781b64 313 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 4 290 1.2E-60 T 15-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme NJ56_07235 c45966bcd2f86bc79b84c6753d781b64 313 Gene3D G3DSA:3.40.50.1100 6 300 9.3E-79 T 15-10-2018 NJ56_15230 8396e3b176573fe42b8c50d99e9b80c8 196 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 196 47.638 T 15-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 NJ56_15230 8396e3b176573fe42b8c50d99e9b80c8 196 Gene3D G3DSA:3.40.50.10990 1 174 5.9E-76 T 15-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 NJ56_15230 8396e3b176573fe42b8c50d99e9b80c8 196 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 5 194 1.4E-90 T 15-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 NJ56_15230 8396e3b176573fe42b8c50d99e9b80c8 196 SUPERFAMILY SSF142695 3 173 1.57E-65 T 15-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 NJ56_15230 8396e3b176573fe42b8c50d99e9b80c8 196 Pfam PF00925 GTP cyclohydrolase II 5 170 3.8E-67 T 15-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 NJ56_16585 885b103fe95bc2b6c72dd8feceb3159f 95 Gene3D G3DSA:3.30.70.100 1 95 1.1E-31 T 15-10-2018 NJ56_16585 885b103fe95bc2b6c72dd8feceb3159f 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 4 77 2.7E-18 T 15-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain NJ56_16585 885b103fe95bc2b6c72dd8feceb3159f 95 SUPERFAMILY SSF54909 4 94 7.87E-30 T 15-10-2018 IPR011008 Dimeric alpha-beta barrel NJ56_02725 cb2b30f7b41ae647dcdca3bba68df12e 438 Pfam PF08245 Mur ligase middle domain 110 280 2.8E-28 T 15-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 NJ56_02725 cb2b30f7b41ae647dcdca3bba68df12e 438 Gene3D G3DSA:3.40.1190.10 94 299 3.8E-80 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_02725 cb2b30f7b41ae647dcdca3bba68df12e 438 SUPERFAMILY SSF53244 299 437 4.03E-50 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_02725 cb2b30f7b41ae647dcdca3bba68df12e 438 SUPERFAMILY SSF53623 95 297 3.92E-56 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_02725 cb2b30f7b41ae647dcdca3bba68df12e 438 Gene3D G3DSA:3.90.190.20 300 434 5.9E-45 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_02725 cb2b30f7b41ae647dcdca3bba68df12e 438 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 437 34.213 T 15-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 NJ56_02725 cb2b30f7b41ae647dcdca3bba68df12e 438 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 435 8.5E-126 T 15-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 NJ56_02725 cb2b30f7b41ae647dcdca3bba68df12e 438 Pfam PF02875 Mur ligase family, glutamate ligase domain 301 357 7.2E-8 T 15-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 NJ56_02725 cb2b30f7b41ae647dcdca3bba68df12e 438 Gene3D G3DSA:3.40.50.720 2 93 7.0E-24 T 15-10-2018 NJ56_02725 cb2b30f7b41ae647dcdca3bba68df12e 438 SUPERFAMILY SSF51984 3 94 3.66E-23 T 15-10-2018 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 Pfam PF02803 Thiolase, C-terminal domain 261 386 1.3E-50 T 15-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 Gene3D G3DSA:3.40.47.10 134 381 5.3E-152 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 2.8E-143 T 15-10-2018 IPR002155 Thiolase GO:0016747 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 Pfam PF00108 Thiolase, N-terminal domain 4 254 8.9E-84 T 15-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 60.507 T 15-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 15-10-2018 IPR020610 Thiolase, active site GO:0016747 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 15-10-2018 IPR020613 Thiolase, conserved site GO:0016747 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 15-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 SUPERFAMILY SSF53901 1 258 2.4E-77 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 PIRSF PIRSF000429 1 387 1.1E-131 T 15-10-2018 IPR002155 Thiolase GO:0016747 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 SUPERFAMILY SSF53901 262 386 1.0E-44 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 387 7.9E-228 T 15-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 NJ56_04880 1fed1f1ab97a996d6577a9cfd6fe0325 387 Gene3D G3DSA:3.40.47.10 4 267 5.3E-152 T 15-10-2018 IPR016039 Thiolase-like GO:0003824 NJ56_08120 c970cdf72716969d78ca1236e1e3b129 552 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 7 549 1.6E-251 T 15-10-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 NJ56_08120 c970cdf72716969d78ca1236e1e3b129 552 Gene3D G3DSA:2.60.40.1180 476 549 8.2E-19 T 15-10-2018 IPR013780 Glycosyl hydrolase, all-beta NJ56_08120 c970cdf72716969d78ca1236e1e3b129 552 SUPERFAMILY SSF51011 475 550 2.77E-18 T 15-10-2018 NJ56_08120 c970cdf72716969d78ca1236e1e3b129 552 Gene3D G3DSA:3.20.20.80 7 467 8.9E-188 T 15-10-2018 NJ56_08120 c970cdf72716969d78ca1236e1e3b129 552 Pfam PF16657 Maltogenic Amylase, C-terminal domain 475 545 8.9E-8 T 15-10-2018 IPR032091 Maltogenic Amylase, C-terminal NJ56_08120 c970cdf72716969d78ca1236e1e3b129 552 Pfam PF00128 Alpha amylase, catalytic domain 30 371 2.3E-123 T 15-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NJ56_08120 c970cdf72716969d78ca1236e1e3b129 552 SUPERFAMILY SSF51445 5 472 7.17E-154 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_08120 c970cdf72716969d78ca1236e1e3b129 552 Gene3D G3DSA:3.90.400.10 107 175 8.9E-188 T 15-10-2018 NJ56_08120 c970cdf72716969d78ca1236e1e3b129 552 SMART SM00642 15 414 7.0E-152 T 15-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NJ56_04015 2887404644f9c5ce3c23d613fafb0339 249 SUPERFAMILY SSF53474 14 249 5.04E-37 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_04015 2887404644f9c5ce3c23d613fafb0339 249 Pfam PF00326 Prolyl oligopeptidase family 49 234 9.3E-15 T 15-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 NJ56_04015 2887404644f9c5ce3c23d613fafb0339 249 Gene3D G3DSA:3.40.50.1820 2 249 1.3E-55 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_00200 e0344d19bf61a3f72325129ba78355ed 347 Gene3D G3DSA:2.70.98.10 8 347 1.7E-112 T 15-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 NJ56_00200 e0344d19bf61a3f72325129ba78355ed 347 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 12 344 8.9E-141 T 15-10-2018 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 NJ56_00200 e0344d19bf61a3f72325129ba78355ed 347 Pfam PF01263 Aldose 1-epimerase 19 343 2.2E-80 T 15-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 NJ56_00200 e0344d19bf61a3f72325129ba78355ed 347 SUPERFAMILY SSF74650 6 344 2.76E-103 T 15-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 NJ56_00200 e0344d19bf61a3f72325129ba78355ed 347 PIRSF PIRSF005096 1 347 7.9E-117 T 15-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 SMART SM00487 9 425 1.5E-28 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 SUPERFAMILY SSF52540 37 580 5.54E-35 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 Pfam PF12344 Ultra-violet resistance protein B 552 593 9.7E-19 T 15-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 Pfam PF04851 Type III restriction enzyme, res subunit 11 92 3.1E-9 T 15-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 SUPERFAMILY SSF52540 3 415 5.69E-138 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 Gene3D G3DSA:3.40.50.300 267 414 1.1E-51 T 15-10-2018 NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 Gene3D G3DSA:4.10.860.10 611 672 2.6E-21 T 15-10-2018 NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 Pfam PF00271 Helicase conserved C-terminal domain 435 544 1.9E-16 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 Gene3D G3DSA:3.40.50.300 415 589 1.3E-47 T 15-10-2018 NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 Pfam PF02151 UvrB/uvrC motif 632 667 1.3E-9 T 15-10-2018 IPR001943 UVR domain GO:0005515 NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 665 0.0 T 15-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 Gene3D G3DSA:3.40.50.300 1 244 1.8E-76 T 15-10-2018 NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 667 43.737 T 15-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 SUPERFAMILY SSF46600 623 668 7.06E-12 T 15-10-2018 IPR036876 UVR domain superfamily NJ56_00110 c01f50b8e0cf922ac90813fb72ced68c 672 SMART SM00490 460 546 9.4E-19 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_11280 2c9d0f2463009480735962dab56408b8 558 SUPERFAMILY SSF55781 226 345 7.01E-6 T 15-10-2018 NJ56_11280 2c9d0f2463009480735962dab56408b8 558 Pfam PF06580 Histidine kinase 359 437 7.5E-25 T 15-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 NJ56_11280 2c9d0f2463009480735962dab56408b8 558 Gene3D G3DSA:1.10.1760.20 44 204 3.4E-10 T 15-10-2018 NJ56_11280 2c9d0f2463009480735962dab56408b8 558 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 550 5.4E-7 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_11280 2c9d0f2463009480735962dab56408b8 558 Pfam PF07694 5TMR of 5TMR-LYT 28 193 3.7E-45 T 15-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 NJ56_11280 2c9d0f2463009480735962dab56408b8 558 SUPERFAMILY SSF55874 413 548 1.83E-16 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_11280 2c9d0f2463009480735962dab56408b8 558 SMART SM00387 451 553 1.1E-5 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_11280 2c9d0f2463009480735962dab56408b8 558 Gene3D G3DSA:3.30.565.10 411 556 3.2E-16 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_00100 9f449572ded2c6705e230a6bb4e7e59d 681 Pfam PF07715 TonB-dependent Receptor Plug Domain 78 167 4.0E-8 T 15-10-2018 IPR012910 TonB-dependent receptor, plug domain NJ56_00100 9f449572ded2c6705e230a6bb4e7e59d 681 Gene3D G3DSA:2.40.170.20 192 681 3.5E-48 T 15-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NJ56_00100 9f449572ded2c6705e230a6bb4e7e59d 681 Pfam PF00593 TonB dependent receptor 175 680 2.8E-25 T 15-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel NJ56_00100 9f449572ded2c6705e230a6bb4e7e59d 681 SUPERFAMILY SSF56935 77 681 1.55E-71 T 15-10-2018 NJ56_00100 9f449572ded2c6705e230a6bb4e7e59d 681 Gene3D G3DSA:2.170.130.10 55 172 9.3E-9 T 15-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily NJ56_01745 71b0e33ea0fcac4cbdfac1738ecbf26f 266 Pfam PF04205 FMN-binding domain 151 246 1.6E-15 T 15-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 NJ56_01745 71b0e33ea0fcac4cbdfac1738ecbf26f 266 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 10 261 35.65 T 15-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 NJ56_01745 71b0e33ea0fcac4cbdfac1738ecbf26f 266 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 10 257 2.8E-96 T 15-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 NJ56_01745 71b0e33ea0fcac4cbdfac1738ecbf26f 266 PIRSF PIRSF009437 2 264 1.1E-100 T 15-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 NJ56_01745 71b0e33ea0fcac4cbdfac1738ecbf26f 266 SMART SM00900 151 249 2.4E-32 T 15-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 NJ56_05835 3e088b2dfa5ca0796c9cad8c203b2976 515 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 512 1.8E-236 T 15-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_05835 3e088b2dfa5ca0796c9cad8c203b2976 515 PIRSF PIRSF001492 1 515 1.7E-203 T 15-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_05835 3e088b2dfa5ca0796c9cad8c203b2976 515 Gene3D G3DSA:3.40.720.10 7 511 7.0E-215 T 15-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 NJ56_05835 3e088b2dfa5ca0796c9cad8c203b2976 515 Gene3D G3DSA:3.40.1450.10 79 313 7.0E-215 T 15-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_05835 3e088b2dfa5ca0796c9cad8c203b2976 515 Pfam PF01676 Metalloenzyme superfamily 6 501 4.3E-81 T 15-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 NJ56_05835 3e088b2dfa5ca0796c9cad8c203b2976 515 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 85 300 6.3E-82 T 15-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_05835 3e088b2dfa5ca0796c9cad8c203b2976 515 SUPERFAMILY SSF64158 79 311 3.4E-85 T 15-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_05835 3e088b2dfa5ca0796c9cad8c203b2976 515 SUPERFAMILY SSF53649 5 511 5.1E-73 T 15-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 NJ56_05835 3e088b2dfa5ca0796c9cad8c203b2976 515 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 513 49.982 T 15-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NJ56_06150 f291f6b74bf809fe21a493a54c722dde 337 Gene3D G3DSA:1.10.260.40 3 59 4.2E-24 T 15-10-2018 NJ56_06150 f291f6b74bf809fe21a493a54c722dde 337 SUPERFAMILY SSF47413 2 59 7.51E-18 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_06150 f291f6b74bf809fe21a493a54c722dde 337 SMART SM00354 1 71 4.0E-35 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_06150 f291f6b74bf809fe21a493a54c722dde 337 Pfam PF13377 Periplasmic binding protein-like domain 169 330 1.1E-43 T 15-10-2018 NJ56_06150 f291f6b74bf809fe21a493a54c722dde 337 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 15-10-2018 NJ56_06150 f291f6b74bf809fe21a493a54c722dde 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.9E-21 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_06150 f291f6b74bf809fe21a493a54c722dde 337 Gene3D G3DSA:3.40.50.2300 161 323 3.1E-84 T 15-10-2018 NJ56_06150 f291f6b74bf809fe21a493a54c722dde 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.4E-6 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_06150 f291f6b74bf809fe21a493a54c722dde 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.4E-6 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_06150 f291f6b74bf809fe21a493a54c722dde 337 Gene3D G3DSA:3.40.50.2300 69 322 3.1E-84 T 15-10-2018 NJ56_06150 f291f6b74bf809fe21a493a54c722dde 337 SUPERFAMILY SSF53822 60 332 4.04E-89 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_13420 8508dd3413b18805eb15e3fb34c5730e 203 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 23 86 1.8E-28 T 15-10-2018 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 NJ56_13420 8508dd3413b18805eb15e3fb34c5730e 203 Pfam PF16452 Bacteriophage CI repressor C-terminal domain 100 197 2.9E-15 T 15-10-2018 IPR032499 Bacteriophage CI repressor, C-terminal GO:0051259 NJ56_13420 8508dd3413b18805eb15e3fb34c5730e 203 Gene3D G3DSA:1.10.260.40 22 88 1.0E-22 T 15-10-2018 NJ56_13420 8508dd3413b18805eb15e3fb34c5730e 203 Gene3D G3DSA:2.10.109.10 91 201 1.0E-13 T 15-10-2018 NJ56_02905 69417e8b1905a3b7c08d1e256b9b8ecd 284 Pfam PF00149 Calcineurin-like phosphoesterase 2 127 1.9E-13 T 15-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 NJ56_02905 69417e8b1905a3b7c08d1e256b9b8ecd 284 PIRSF PIRSF000903 1 275 7.6E-124 T 15-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 NJ56_02905 69417e8b1905a3b7c08d1e256b9b8ecd 284 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 278 3.4E-152 T 15-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 NJ56_02905 69417e8b1905a3b7c08d1e256b9b8ecd 284 SUPERFAMILY SSF56300 1 259 3.01E-56 T 15-10-2018 NJ56_02905 69417e8b1905a3b7c08d1e256b9b8ecd 284 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 51.553 T 15-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 NJ56_02905 69417e8b1905a3b7c08d1e256b9b8ecd 284 Gene3D G3DSA:3.60.21.10 1 280 8.3E-82 T 15-10-2018 IPR029052 Metallo-dependent phosphatase-like NJ56_13240 eaf7b146c082711f45a3d09e92660811 161 Pfam PF06995 Phage P2 GpU 6 125 6.3E-44 T 15-10-2018 IPR009734 Myoviridae, GpU NJ56_13240 eaf7b146c082711f45a3d09e92660811 161 PIRSF PIRSF029208 1 147 7.7E-61 T 15-10-2018 IPR016912 Bacteriophage P2, GpU NJ56_05715 11612c53a95b0d445335403ddacd00d0 305 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 18 301 4.3E-128 T 15-10-2018 NJ56_05715 11612c53a95b0d445335403ddacd00d0 305 PIRSF PIRSF005355 1 305 7.0E-86 T 15-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 NJ56_05715 11612c53a95b0d445335403ddacd00d0 305 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 9 302 21.146 T 15-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 NJ56_05715 11612c53a95b0d445335403ddacd00d0 305 Pfam PF01040 UbiA prenyltransferase family 29 270 1.2E-33 T 15-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 NJ56_16225 aec6d44c2124aecf5769aadf7d37b915 345 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 336 1.8E-141 T 15-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 NJ56_16225 aec6d44c2124aecf5769aadf7d37b915 345 Hamap MF_01171 Arginine N-succinyltransferase [astA]. 1 344 72.795 T 15-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 NJ56_16225 aec6d44c2124aecf5769aadf7d37b915 345 Gene3D G3DSA:2.40.40.20 273 340 4.5E-9 T 15-10-2018 NJ56_16225 aec6d44c2124aecf5769aadf7d37b915 345 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 338 1.3E-154 T 15-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 NJ56_16225 aec6d44c2124aecf5769aadf7d37b915 345 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 338 7.9E-146 T 15-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 NJ56_16225 aec6d44c2124aecf5769aadf7d37b915 345 Gene3D G3DSA:3.40.630.30 1 272 9.1E-121 T 15-10-2018 NJ56_16225 aec6d44c2124aecf5769aadf7d37b915 345 SUPERFAMILY SSF55729 1 338 1.97E-131 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_00035 f3bb10cd049eee791534e4f7ce20b9fd 328 SUPERFAMILY SSF111369 179 324 1.44E-12 T 15-10-2018 NJ56_00035 f3bb10cd049eee791534e4f7ce20b9fd 328 Gene3D G3DSA:2.40.30.170 242 321 1.3E-25 T 15-10-2018 NJ56_00035 f3bb10cd049eee791534e4f7ce20b9fd 328 Gene3D G3DSA:2.40.50.100 207 241 1.3E-25 T 15-10-2018 NJ56_00035 f3bb10cd049eee791534e4f7ce20b9fd 328 Gene3D G3DSA:2.40.50.100 43 76 1.5E-14 T 15-10-2018 NJ56_00035 f3bb10cd049eee791534e4f7ce20b9fd 328 SUPERFAMILY SSF111369 41 169 1.44E-9 T 15-10-2018 NJ56_00035 f3bb10cd049eee791534e4f7ce20b9fd 328 Gene3D G3DSA:2.40.30.170 33 42 1.5E-14 T 15-10-2018 NJ56_00035 f3bb10cd049eee791534e4f7ce20b9fd 328 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 34 319 1.2E-16 T 15-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NJ56_00035 f3bb10cd049eee791534e4f7ce20b9fd 328 Gene3D G3DSA:1.10.287.470 179 206 1.3E-25 T 15-10-2018 NJ56_00035 f3bb10cd049eee791534e4f7ce20b9fd 328 Gene3D G3DSA:1.10.287.470 77 111 1.5E-14 T 15-10-2018 NJ56_00035 f3bb10cd049eee791534e4f7ce20b9fd 328 Gene3D G3DSA:1.10.287.470 112 172 3.9E-8 T 15-10-2018 NJ56_07485 f6d97c4f5674721605c1c4c9ef0497c7 206 Gene3D G3DSA:1.10.1050.10 1 102 7.6E-46 T 15-10-2018 NJ56_07485 f6d97c4f5674721605c1c4c9ef0497c7 206 Pfam PF01479 S4 domain 97 143 7.2E-18 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07485 f6d97c4f5674721605c1c4c9ef0497c7 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 8.6E-86 T 15-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 NJ56_07485 f6d97c4f5674721605c1c4c9ef0497c7 206 Gene3D G3DSA:3.10.290.10 103 191 3.5E-36 T 15-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 NJ56_07485 f6d97c4f5674721605c1c4c9ef0497c7 206 SUPERFAMILY SSF55174 3 206 6.54E-72 T 15-10-2018 NJ56_07485 f6d97c4f5674721605c1c4c9ef0497c7 206 SMART SM00363 96 160 8.2E-20 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07485 f6d97c4f5674721605c1c4c9ef0497c7 206 SMART SM01390 3 95 6.1E-50 T 15-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 NJ56_07485 f6d97c4f5674721605c1c4c9ef0497c7 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 6.8E-33 T 15-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 NJ56_07485 f6d97c4f5674721605c1c4c9ef0497c7 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.196 T 15-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 NJ56_07485 f6d97c4f5674721605c1c4c9ef0497c7 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 15-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_09535 f52fe9d4fdb835568ae0f835fa36991c 160 Pfam PF10713 Protein of unknown function (DUF2509) 18 158 1.7E-37 T 15-10-2018 IPR019652 Protein of unknown function DUF2509 NJ56_13015 b9eed7c78d9c58fc6fb229726de13dfe 334 SUPERFAMILY SSF101801 249 322 1.22E-12 T 15-10-2018 IPR036429 SpoA-like superfamily NJ56_13015 b9eed7c78d9c58fc6fb229726de13dfe 334 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 252 320 1.3E-16 T 15-10-2018 IPR001543 Surface presentation of antigen (SpoA) NJ56_13015 b9eed7c78d9c58fc6fb229726de13dfe 334 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 320 3.5E-111 T 15-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NJ56_13015 b9eed7c78d9c58fc6fb229726de13dfe 334 SUPERFAMILY SSF103039 48 230 2.14E-20 T 15-10-2018 IPR028976 CheC-like superfamily NJ56_13015 b9eed7c78d9c58fc6fb229726de13dfe 334 Pfam PF02154 Flagellar motor switch protein FliM 37 230 9.4E-76 T 15-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NJ56_13015 b9eed7c78d9c58fc6fb229726de13dfe 334 PIRSF PIRSF002888 2 330 2.8E-95 T 15-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NJ56_13015 b9eed7c78d9c58fc6fb229726de13dfe 334 Gene3D G3DSA:3.40.1550.10 43 232 3.2E-56 T 15-10-2018 IPR028976 CheC-like superfamily NJ56_13015 b9eed7c78d9c58fc6fb229726de13dfe 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 88 104 3.4E-31 T 15-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NJ56_13015 b9eed7c78d9c58fc6fb229726de13dfe 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 3.4E-31 T 15-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NJ56_13015 b9eed7c78d9c58fc6fb229726de13dfe 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 113 132 3.4E-31 T 15-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NJ56_13015 b9eed7c78d9c58fc6fb229726de13dfe 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 3.4E-31 T 15-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NJ56_11105 680b32fc1a4eb1050616e5abf5a4f537 294 Pfam PF01380 SIS domain 140 267 9.1E-19 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_11105 680b32fc1a4eb1050616e5abf5a4f537 294 SUPERFAMILY SSF46689 12 86 3.58E-18 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_11105 680b32fc1a4eb1050616e5abf5a4f537 294 Gene3D G3DSA:1.10.10.10 9 90 2.4E-24 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_11105 680b32fc1a4eb1050616e5abf5a4f537 294 SUPERFAMILY SSF53697 106 290 2.49E-42 T 15-10-2018 NJ56_11105 680b32fc1a4eb1050616e5abf5a4f537 294 Gene3D G3DSA:3.40.50.10490 110 292 2.7E-45 T 15-10-2018 NJ56_11105 680b32fc1a4eb1050616e5abf5a4f537 294 Pfam PF01418 Helix-turn-helix domain, rpiR family 13 86 7.3E-22 T 15-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 NJ56_05360 5dc90d81811bd9100aed659ea51e4abe 376 PIRSF PIRSF000390 1 376 1.1E-114 T 15-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NJ56_05360 5dc90d81811bd9100aed659ea51e4abe 376 Hamap MF_02026 dTDP-4-amino-4,6-dideoxygalactose transaminase [wecE]. 1 376 81.106 T 15-10-2018 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE GO:0009246|GO:0019180 MetaCyc: PWY-7315 NJ56_05360 5dc90d81811bd9100aed659ea51e4abe 376 Gene3D G3DSA:3.90.1150.10 250 376 1.9E-26 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_05360 5dc90d81811bd9100aed659ea51e4abe 376 Gene3D G3DSA:3.40.640.10 1 249 3.9E-82 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_05360 5dc90d81811bd9100aed659ea51e4abe 376 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 375 8.8E-211 T 15-10-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 NJ56_05360 5dc90d81811bd9100aed659ea51e4abe 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 14 371 8.1E-85 T 15-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NJ56_05360 5dc90d81811bd9100aed659ea51e4abe 376 SUPERFAMILY SSF53383 2 375 2.45E-100 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_12300 97ede05332695968f1849274ff879ad7 414 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 16 395 8.7E-143 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_12300 97ede05332695968f1849274ff879ad7 414 Pfam PF03222 Tryptophan/tyrosine permease family 11 402 2.8E-139 T 15-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 NJ56_12300 97ede05332695968f1849274ff879ad7 414 PIRSF PIRSF006060 5 305 7.7E-10 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_12300 97ede05332695968f1849274ff879ad7 414 PIRSF PIRSF006060 312 412 30.0 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_12300 97ede05332695968f1849274ff879ad7 414 PRINTS PR00166 Aromatic amino acid permease signature 293 312 2.2E-97 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_12300 97ede05332695968f1849274ff879ad7 414 PRINTS PR00166 Aromatic amino acid permease signature 232 251 2.2E-97 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_12300 97ede05332695968f1849274ff879ad7 414 PRINTS PR00166 Aromatic amino acid permease signature 19 42 2.2E-97 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_12300 97ede05332695968f1849274ff879ad7 414 PRINTS PR00166 Aromatic amino acid permease signature 193 215 2.2E-97 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_12300 97ede05332695968f1849274ff879ad7 414 PRINTS PR00166 Aromatic amino acid permease signature 327 345 2.2E-97 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_12300 97ede05332695968f1849274ff879ad7 414 PRINTS PR00166 Aromatic amino acid permease signature 91 111 2.2E-97 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_12300 97ede05332695968f1849274ff879ad7 414 PRINTS PR00166 Aromatic amino acid permease signature 348 367 2.2E-97 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_12300 97ede05332695968f1849274ff879ad7 414 PRINTS PR00166 Aromatic amino acid permease signature 46 65 2.2E-97 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_12300 97ede05332695968f1849274ff879ad7 414 PRINTS PR00166 Aromatic amino acid permease signature 155 175 2.2E-97 T 15-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 NJ56_02325 df3faf678b91b8d5b9a5fdfd33dd450f 105 Pfam PF12084 Protein of unknown function (DUF3561) 1 104 1.5E-45 T 15-10-2018 IPR022721 Protein of unknown function DUF3561 NJ56_02325 df3faf678b91b8d5b9a5fdfd33dd450f 105 ProDom PD070788 MEMBRANE OXIDASE SUBUNIT CYTOCHROME YGBE INNER STY3057 TRANSMEMBRANE 1 105 3.0E-42 T 15-10-2018 IPR022721 Protein of unknown function DUF3561 NJ56_05635 8ac61a136ae7f1540a23db0f56b2dfe8 383 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 110 147 - T 15-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 NJ56_05635 8ac61a136ae7f1540a23db0f56b2dfe8 383 Pfam PF07687 Peptidase dimerisation domain 178 288 1.9E-24 T 15-10-2018 IPR011650 Peptidase M20, dimerisation domain NJ56_05635 8ac61a136ae7f1540a23db0f56b2dfe8 383 Gene3D G3DSA:3.40.630.10 12 364 2.5E-80 T 15-10-2018 NJ56_05635 8ac61a136ae7f1540a23db0f56b2dfe8 383 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 377 1.8E-154 T 15-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 NJ56_05635 8ac61a136ae7f1540a23db0f56b2dfe8 383 Gene3D G3DSA:3.30.70.360 181 301 2.5E-80 T 15-10-2018 NJ56_05635 8ac61a136ae7f1540a23db0f56b2dfe8 383 SUPERFAMILY SSF53187 4 382 4.57E-58 T 15-10-2018 NJ56_05635 8ac61a136ae7f1540a23db0f56b2dfe8 383 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 75 84 - T 15-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 NJ56_05635 8ac61a136ae7f1540a23db0f56b2dfe8 383 Hamap MF_01108 Acetylornithine deacetylase [argE]. 3 382 65.068 T 15-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 NJ56_05635 8ac61a136ae7f1540a23db0f56b2dfe8 383 Pfam PF01546 Peptidase family M20/M25/M40 76 378 2.1E-33 T 15-10-2018 IPR002933 Peptidase M20 GO:0016787 NJ56_05635 8ac61a136ae7f1540a23db0f56b2dfe8 383 SUPERFAMILY SSF55031 181 295 2.54E-22 T 15-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain NJ56_16825 87d294bc9b4216219c32f21177e69c77 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 15-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 NJ56_16825 87d294bc9b4216219c32f21177e69c77 396 SUPERFAMILY SSF53383 1 396 2.33E-119 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_16825 87d294bc9b4216219c32f21177e69c77 396 Gene3D G3DSA:3.40.640.10 45 315 1.1E-162 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_16825 87d294bc9b4216219c32f21177e69c77 396 PRINTS PR00799 Aspartate aminotransferase signature 175 194 1.5E-39 T 15-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 NJ56_16825 87d294bc9b4216219c32f21177e69c77 396 PRINTS PR00799 Aspartate aminotransferase signature 273 298 1.5E-39 T 15-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 NJ56_16825 87d294bc9b4216219c32f21177e69c77 396 PRINTS PR00799 Aspartate aminotransferase signature 341 359 1.5E-39 T 15-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 NJ56_16825 87d294bc9b4216219c32f21177e69c77 396 PRINTS PR00799 Aspartate aminotransferase signature 206 218 1.5E-39 T 15-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 NJ56_16825 87d294bc9b4216219c32f21177e69c77 396 Pfam PF00155 Aminotransferase class I and II 27 392 3.0E-91 T 15-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NJ56_16825 87d294bc9b4216219c32f21177e69c77 396 Gene3D G3DSA:3.90.1150.10 11 391 1.1E-162 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_05280 9a3a301668df55fb57f1005fa617823b 106 Pfam PF01491 Frataxin-like domain 1 102 1.3E-29 T 15-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 NJ56_05280 9a3a301668df55fb57f1005fa617823b 106 SUPERFAMILY SSF55387 1 105 2.44E-39 T 15-10-2018 NJ56_05280 9a3a301668df55fb57f1005fa617823b 106 SMART SM01219 1 106 2.0E-54 T 15-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 NJ56_05280 9a3a301668df55fb57f1005fa617823b 106 ProSitePatterns PS01344 Frataxin family signature. 50 64 - T 15-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 NJ56_05280 9a3a301668df55fb57f1005fa617823b 106 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 105 28.329 T 15-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 NJ56_05280 9a3a301668df55fb57f1005fa617823b 106 Gene3D G3DSA:3.30.920.10 1 106 3.6E-41 T 15-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 NJ56_05280 9a3a301668df55fb57f1005fa617823b 106 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 105 2.5E-43 T 15-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 NJ56_01560 382331abb1895e9da9c03fcb134f3a62 200 PIRSF PIRSF000239 1 199 3.0E-58 T 15-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 NJ56_01560 382331abb1895e9da9c03fcb134f3a62 200 Gene3D G3DSA:3.40.30.10 1 198 1.0E-71 T 15-10-2018 NJ56_01560 382331abb1895e9da9c03fcb134f3a62 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 195 1.3E-10 T 15-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 NJ56_01560 382331abb1895e9da9c03fcb134f3a62 200 SUPERFAMILY SSF52833 1 195 8.23E-66 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_01560 382331abb1895e9da9c03fcb134f3a62 200 Pfam PF00578 AhpC/TSA family 5 139 1.5E-34 T 15-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 1.7E-9 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 1.7E-9 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 1.7E-9 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 PIRSF PIRSF006809 3 422 1.0E-148 T 15-10-2018 IPR016496 GTPase HflX GO:0005525 NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 Hamap MF_00900 GTPase HflX [hflX]. 27 390 47.849 T 15-10-2018 IPR016496 GTPase HflX GO:0005525 NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 Gene3D G3DSA:3.40.50.11060 18 138 2.2E-36 T 15-10-2018 NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 Pfam PF01926 50S ribosome-binding GTPase 200 318 1.1E-20 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 361 2.4E-153 T 15-10-2018 IPR016496 GTPase HflX GO:0005525 NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 5.5E-29 T 15-10-2018 IPR032305 GTP-binding protein, middle domain NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 SUPERFAMILY SSF54980 366 422 1.15E-13 T 15-10-2018 IPR035647 EF-G domain III/V-like NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 4.1E-30 T 15-10-2018 IPR025121 GTPase HflX, N-terminal NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 SUPERFAMILY SSF52540 197 375 1.3E-40 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04095 1a622fb935807c3943e1fb25d1d6b3a4 426 Gene3D G3DSA:3.40.50.300 197 365 1.7E-39 T 15-10-2018 NJ56_02505 ee2cfc0ddc90b657e674f3a49fccb14a 264 SUPERFAMILY SSF51621 4 263 1.2E-103 T 15-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 NJ56_02505 ee2cfc0ddc90b657e674f3a49fccb14a 264 PIRSF PIRSF000388 1 264 3.8E-96 T 15-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 NJ56_02505 ee2cfc0ddc90b657e674f3a49fccb14a 264 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 264 1.4E-118 T 15-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 NJ56_02505 ee2cfc0ddc90b657e674f3a49fccb14a 264 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 263 41.404 T 15-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 NJ56_02505 ee2cfc0ddc90b657e674f3a49fccb14a 264 Gene3D G3DSA:3.20.20.60 1 263 2.1E-102 T 15-10-2018 NJ56_02505 ee2cfc0ddc90b657e674f3a49fccb14a 264 Pfam PF02548 Ketopantoate hydroxymethyltransferase 4 258 1.9E-104 T 15-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 NJ56_02050 fe0e10c5783d299ab676130bc25144c3 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 4.2E-40 T 15-10-2018 IPR003004 GspF/PilC family NJ56_02050 fe0e10c5783d299ab676130bc25144c3 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 4.2E-40 T 15-10-2018 IPR003004 GspF/PilC family NJ56_02050 fe0e10c5783d299ab676130bc25144c3 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 4.2E-40 T 15-10-2018 IPR003004 GspF/PilC family NJ56_02050 fe0e10c5783d299ab676130bc25144c3 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 4.2E-40 T 15-10-2018 IPR003004 GspF/PilC family NJ56_02050 fe0e10c5783d299ab676130bc25144c3 405 Gene3D G3DSA:1.20.81.30 59 173 1.9E-30 T 15-10-2018 NJ56_02050 fe0e10c5783d299ab676130bc25144c3 405 Pfam PF00482 Type II secretion system (T2SS), protein F 275 395 4.1E-21 T 15-10-2018 IPR018076 Type II secretion system F domain NJ56_02050 fe0e10c5783d299ab676130bc25144c3 405 Pfam PF00482 Type II secretion system (T2SS), protein F 72 194 5.3E-30 T 15-10-2018 IPR018076 Type II secretion system F domain NJ56_02050 fe0e10c5783d299ab676130bc25144c3 405 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 403 1.9E-142 T 15-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 NJ56_02050 fe0e10c5783d299ab676130bc25144c3 405 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 166 194 - T 15-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 NJ56_02050 fe0e10c5783d299ab676130bc25144c3 405 Gene3D G3DSA:1.20.81.30 258 368 8.2E-22 T 15-10-2018 NJ56_04980 2980a34d47ef42c4aa84db4f3744cce2 317 Gene3D G3DSA:3.40.190.10 160 263 6.9E-72 T 15-10-2018 NJ56_04980 2980a34d47ef42c4aa84db4f3744cce2 317 Gene3D G3DSA:1.10.10.10 1 89 2.1E-29 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_04980 2980a34d47ef42c4aa84db4f3744cce2 317 SUPERFAMILY SSF46785 1 109 6.53E-20 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_04980 2980a34d47ef42c4aa84db4f3744cce2 317 SUPERFAMILY SSF53850 88 291 1.71E-39 T 15-10-2018 NJ56_04980 2980a34d47ef42c4aa84db4f3744cce2 317 Gene3D G3DSA:3.40.190.10 90 286 6.9E-72 T 15-10-2018 NJ56_04980 2980a34d47ef42c4aa84db4f3744cce2 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_04980 2980a34d47ef42c4aa84db4f3744cce2 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_04980 2980a34d47ef42c4aa84db4f3744cce2 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_04980 2980a34d47ef42c4aa84db4f3744cce2 317 Pfam PF03466 LysR substrate binding domain 86 288 2.0E-42 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_04980 2980a34d47ef42c4aa84db4f3744cce2 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.2E-15 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 TIGRFAM TIGR00191 thrB: homoserine kinase 2 307 5.5E-113 T 15-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 Gene3D G3DSA:3.30.230.10 4 167 2.2E-98 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 Hamap MF_00384 Homoserine kinase [thrB]. 4 308 28.269 T 15-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 PRINTS PR00958 Homoserine kinase signature 254 269 6.8E-33 T 15-10-2018 NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 PRINTS PR00958 Homoserine kinase signature 175 192 6.8E-33 T 15-10-2018 NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 PRINTS PR00958 Homoserine kinase signature 137 150 6.8E-33 T 15-10-2018 NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 PRINTS PR00958 Homoserine kinase signature 9 24 6.8E-33 T 15-10-2018 NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 PRINTS PR00958 Homoserine kinase signature 97 112 6.8E-33 T 15-10-2018 NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 Gene3D G3DSA:3.30.70.890 168 277 2.2E-98 T 15-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 PIRSF PIRSF000676 1 308 8.0E-84 T 15-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 SUPERFAMILY SSF55060 173 288 1.44E-31 T 15-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 90 101 - T 15-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 Pfam PF00288 GHMP kinases N terminal domain 85 150 1.1E-13 T 15-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 SUPERFAMILY SSF54211 1 161 1.97E-31 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_03040 fa30cfe115a46e17a2c1d839c40a49a4 309 Pfam PF08544 GHMP kinases C terminal 224 285 2.8E-7 T 15-10-2018 IPR013750 GHMP kinase, C-terminal domain NJ56_06480 bdd647715e82120ee385e8c350bba13b 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 1.9E-210 T 15-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06480 bdd647715e82120ee385e8c350bba13b 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 689 0.0 T 15-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06480 bdd647715e82120ee385e8c350bba13b 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 688 26.581 T 15-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06480 bdd647715e82120ee385e8c350bba13b 689 SUPERFAMILY SSF109604 339 538 3.77E-16 T 15-10-2018 NJ56_06480 bdd647715e82120ee385e8c350bba13b 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 7.8E-37 T 15-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06480 bdd647715e82120ee385e8c350bba13b 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 7.8E-37 T 15-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06480 bdd647715e82120ee385e8c350bba13b 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 7.8E-37 T 15-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06480 bdd647715e82120ee385e8c350bba13b 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 7.8E-37 T 15-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06480 bdd647715e82120ee385e8c350bba13b 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 7.8E-37 T 15-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06480 bdd647715e82120ee385e8c350bba13b 689 Pfam PF05746 DALR anticodon binding domain 582 679 1.0E-7 T 15-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 NJ56_08290 b020ca826b7b99c94624f2451d7ac39e 300 Pfam PF16199 Radical_SAM C-terminal domain 208 284 3.1E-18 T 15-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 NJ56_08290 b020ca826b7b99c94624f2451d7ac39e 300 Gene3D G3DSA:3.80.30.20 41 238 1.2E-18 T 15-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe NJ56_08290 b020ca826b7b99c94624f2451d7ac39e 300 SMART SM00729 23 247 2.3E-42 T 15-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 NJ56_08290 b020ca826b7b99c94624f2451d7ac39e 300 Pfam PF04055 Radical SAM superfamily 43 194 4.3E-16 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_08290 b020ca826b7b99c94624f2451d7ac39e 300 SUPERFAMILY SSF102114 13 256 9.55E-46 T 15-10-2018 NJ56_08290 b020ca826b7b99c94624f2451d7ac39e 300 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 294 2.7E-130 T 15-10-2018 IPR005911 Protein YhcC-like GO:0051536 NJ56_16990 f94af34782539d0767d359ec962498bb 164 SMART SM00344 12 121 1.1E-50 T 15-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 NJ56_16990 f94af34782539d0767d359ec962498bb 164 Gene3D G3DSA:1.10.10.10 1 63 1.5E-31 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_16990 f94af34782539d0767d359ec962498bb 164 SUPERFAMILY SSF54909 75 157 1.88E-21 T 15-10-2018 IPR011008 Dimeric alpha-beta barrel NJ56_16990 f94af34782539d0767d359ec962498bb 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 4.3E-21 T 15-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 NJ56_16990 f94af34782539d0767d359ec962498bb 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 4.3E-21 T 15-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 NJ56_16990 f94af34782539d0767d359ec962498bb 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 4.3E-21 T 15-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 NJ56_16990 f94af34782539d0767d359ec962498bb 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 59 3.8E-20 T 15-10-2018 NJ56_16990 f94af34782539d0767d359ec962498bb 164 Pfam PF01037 Lrp/AsnC ligand binding domain 78 152 7.5E-25 T 15-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NJ56_16990 f94af34782539d0767d359ec962498bb 164 Gene3D G3DSA:3.30.70.920 64 159 1.2E-24 T 15-10-2018 NJ56_16990 f94af34782539d0767d359ec962498bb 164 SUPERFAMILY SSF46785 12 70 2.59E-18 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_16280 b51364264a685952ccf9e3285f19488f 300 Pfam PF00892 EamA-like transporter family 150 285 5.1E-14 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_16280 b51364264a685952ccf9e3285f19488f 300 Pfam PF00892 EamA-like transporter family 4 134 2.1E-12 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_16280 b51364264a685952ccf9e3285f19488f 300 SUPERFAMILY SSF103481 191 287 4.97E-8 T 15-10-2018 NJ56_16280 b51364264a685952ccf9e3285f19488f 300 SUPERFAMILY SSF103481 35 137 2.55E-13 T 15-10-2018 NJ56_04075 9f0a6c8fe8d80e77176c4559bf496dfa 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 430 1.3E-201 T 15-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 NJ56_04075 9f0a6c8fe8d80e77176c4559bf496dfa 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 15-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 NJ56_04075 9f0a6c8fe8d80e77176c4559bf496dfa 432 Gene3D G3DSA:3.40.440.10 6 249 7.0E-105 T 15-10-2018 NJ56_04075 9f0a6c8fe8d80e77176c4559bf496dfa 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 15-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 NJ56_04075 9f0a6c8fe8d80e77176c4559bf496dfa 432 SUPERFAMILY SSF52540 3 431 7.75E-179 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04075 9f0a6c8fe8d80e77176c4559bf496dfa 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 216.862 T 15-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 NJ56_04075 9f0a6c8fe8d80e77176c4559bf496dfa 432 Gene3D G3DSA:1.10.300.10 102 201 7.0E-105 T 15-10-2018 NJ56_04075 9f0a6c8fe8d80e77176c4559bf496dfa 432 Gene3D G3DSA:3.90.170.10 267 432 2.4E-70 T 15-10-2018 NJ56_04075 9f0a6c8fe8d80e77176c4559bf496dfa 432 SMART SM00788 4 425 5.4E-297 T 15-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 NJ56_04075 9f0a6c8fe8d80e77176c4559bf496dfa 432 Pfam PF00709 Adenylosuccinate synthetase 5 423 1.7E-178 T 15-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 NJ56_18230 9c7c8d10b59bb633515b2d689f88117c 712 Gene3D G3DSA:3.40.50.300 157 562 2.2E-132 T 15-10-2018 NJ56_18230 9c7c8d10b59bb633515b2d689f88117c 712 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 173 561 1.1E-114 T 15-10-2018 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain NJ56_18230 9c7c8d10b59bb633515b2d689f88117c 712 TIGRFAM TIGR02759 TraD_Ftype: type IV conjugative transfer system coupling protein TraD 8 578 7.5E-215 T 15-10-2018 IPR014128 Type IV conjugative transfer system, coupling protein TraD GO:0000746 NJ56_18230 9c7c8d10b59bb633515b2d689f88117c 712 Pfam PF12615 F sex factor protein N terminal 32 126 7.9E-14 T 15-10-2018 IPR022585 TraD coupling protein, N-terminal NJ56_18230 9c7c8d10b59bb633515b2d689f88117c 712 SUPERFAMILY SSF52540 185 572 1.06E-57 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_18230 9c7c8d10b59bb633515b2d689f88117c 712 Gene3D G3DSA:1.10.8.80 248 363 2.2E-132 T 15-10-2018 NJ56_14265 ed943b09cf8380fa9ea09a1b1dca1945 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 19 87 7.2E-25 T 15-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 NJ56_14265 ed943b09cf8380fa9ea09a1b1dca1945 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 5.7E-107 T 15-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 NJ56_14265 ed943b09cf8380fa9ea09a1b1dca1945 327 SUPERFAMILY SSF46589 14 99 6.28E-22 T 15-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 NJ56_14265 ed943b09cf8380fa9ea09a1b1dca1945 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.716 T 15-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 NJ56_14265 ed943b09cf8380fa9ea09a1b1dca1945 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 327 2.5E-116 T 15-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 NJ56_14265 ed943b09cf8380fa9ea09a1b1dca1945 327 SUPERFAMILY SSF55681 92 327 2.71E-81 T 15-10-2018 NJ56_14265 ed943b09cf8380fa9ea09a1b1dca1945 327 Gene3D G3DSA:3.30.930.10 8 327 2.5E-124 T 15-10-2018 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 SUPERFAMILY SSF55681 116 425 1.24E-96 T 15-10-2018 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 Gene3D G3DSA:3.30.930.10 105 430 2.1E-113 T 15-10-2018 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 423 3.4E-178 T 15-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 SUPERFAMILY SSF46589 1 112 7.85E-31 T 15-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 Gene3D G3DSA:1.10.287.40 1 104 7.4E-20 T 15-10-2018 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 428 41.013 T 15-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 229 406 2.1E-35 T 15-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 2.6E-30 T 15-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 PRINTS PR00981 Seryl-tRNA synthetase signature 357 373 2.8E-33 T 15-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 PRINTS PR00981 Seryl-tRNA synthetase signature 339 355 2.8E-33 T 15-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 PRINTS PR00981 Seryl-tRNA synthetase signature 282 295 2.8E-33 T 15-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 PRINTS PR00981 Seryl-tRNA synthetase signature 322 335 2.8E-33 T 15-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 PRINTS PR00981 Seryl-tRNA synthetase signature 270 282 2.8E-33 T 15-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 NJ56_16970 250ceea955734d4fd04e0a1bc57a684f 431 PIRSF PIRSF001529 1 430 3.3E-180 T 15-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 NJ56_04485 a44390988d48ff26f27415433e5f372d 498 TIGRFAM TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family 4 488 3.5E-176 T 15-10-2018 IPR021207 Integrating conjugative element protein, PFL4705 NJ56_04485 a44390988d48ff26f27415433e5f372d 498 Pfam PF03743 Bacterial conjugation TrbI-like protein 366 474 7.5E-6 T 15-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI NJ56_06560 5b9c72b50dd2d5a44e5d00572b0790b0 803 SUPERFAMILY SSF53706 1 638 1.16E-235 T 15-10-2018 NJ56_06560 5b9c72b50dd2d5a44e5d00572b0790b0 803 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 715 742 - T 15-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 NJ56_06560 5b9c72b50dd2d5a44e5d00572b0790b0 803 SUPERFAMILY SSF50692 617 803 1.16E-43 T 15-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily NJ56_06560 5b9c72b50dd2d5a44e5d00572b0790b0 803 Pfam PF01568 Molydopterin dinucleotide binding domain 681 796 4.6E-17 T 15-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 NJ56_06560 5b9c72b50dd2d5a44e5d00572b0790b0 803 Gene3D G3DSA:3.40.50.740 292 472 4.8E-59 T 15-10-2018 NJ56_06560 5b9c72b50dd2d5a44e5d00572b0790b0 803 Gene3D G3DSA:3.40.228.10 535 627 2.7E-29 T 15-10-2018 NJ56_06560 5b9c72b50dd2d5a44e5d00572b0790b0 803 Pfam PF00384 Molybdopterin oxidoreductase 2 380 7.3E-25 T 15-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_06560 5b9c72b50dd2d5a44e5d00572b0790b0 803 Gene3D G3DSA:2.40.40.20 628 803 6.4E-75 T 15-10-2018 NJ56_06560 5b9c72b50dd2d5a44e5d00572b0790b0 803 Gene3D G3DSA:3.40.228.10 1 265 9.0E-74 T 15-10-2018 NJ56_06560 5b9c72b50dd2d5a44e5d00572b0790b0 803 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 802 0.0 T 15-10-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 NJ56_17655 f4224c538ac0e0e4de02735f32e38942 83 Pfam PF01381 Helix-turn-helix 6 64 6.3E-10 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_17655 f4224c538ac0e0e4de02735f32e38942 83 SUPERFAMILY SSF47413 2 69 1.04E-12 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_17655 f4224c538ac0e0e4de02735f32e38942 83 Gene3D G3DSA:1.10.260.40 1 83 5.0E-19 T 15-10-2018 NJ56_17655 f4224c538ac0e0e4de02735f32e38942 83 SMART SM00530 5 64 9.5E-11 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_15105 3a66d247b4f6fcf76a4b9707f83fcd13 332 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 330 1.5E-105 T 15-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 NJ56_15105 3a66d247b4f6fcf76a4b9707f83fcd13 332 Hamap MF_00540 Adenosine deaminase [add]. 1 331 51.474 T 15-10-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 NJ56_15105 3a66d247b4f6fcf76a4b9707f83fcd13 332 Gene3D G3DSA:3.20.20.140 3 332 6.4E-93 T 15-10-2018 NJ56_15105 3a66d247b4f6fcf76a4b9707f83fcd13 332 ProSitePatterns PS00485 Adenosine and AMP deaminase signature. 274 280 - T 15-10-2018 IPR006650 Adenosine/AMP deaminase active site GO:0009168|GO:0019239 Reactome: R-HSA-74217 NJ56_15105 3a66d247b4f6fcf76a4b9707f83fcd13 332 SUPERFAMILY SSF51556 5 326 3.57E-72 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_15105 3a66d247b4f6fcf76a4b9707f83fcd13 332 Pfam PF00962 Adenosine/AMP deaminase 6 328 3.1E-91 T 15-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 Gene3D G3DSA:3.30.260.10 136 410 3.8E-239 T 15-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 41.387 T 15-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 3.7E-255 T 15-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 15-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 15-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 15-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 15-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 15-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 SUPERFAMILY SSF52029 185 376 2.27E-81 T 15-10-2018 IPR027409 GroEL-like apical domain superfamily NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 4.6E-94 T 15-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 15-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 SUPERFAMILY SSF48592 7 521 2.29E-77 T 15-10-2018 IPR027413 GroEL-like equatorial domain superfamily NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 Gene3D G3DSA:3.50.7.10 192 372 3.8E-239 T 15-10-2018 IPR027409 GroEL-like apical domain superfamily NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 SUPERFAMILY SSF54849 137 203 1.24E-24 T 15-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily NJ56_04250 9743ab02a40b7012a8ee202935a86594 547 Gene3D G3DSA:1.10.560.10 8 521 3.8E-239 T 15-10-2018 IPR027413 GroEL-like equatorial domain superfamily NJ56_01940 fe4538622b2bc9de4784e2788bdecfae 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 2.7E-49 T 15-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_01940 fe4538622b2bc9de4784e2788bdecfae 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 2.7E-49 T 15-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_01940 fe4538622b2bc9de4784e2788bdecfae 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 2.7E-49 T 15-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_01940 fe4538622b2bc9de4784e2788bdecfae 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 2.7E-49 T 15-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_01940 fe4538622b2bc9de4784e2788bdecfae 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 2.7E-49 T 15-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_01940 fe4538622b2bc9de4784e2788bdecfae 171 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 152 2.5E-62 T 15-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_01940 fe4538622b2bc9de4784e2788bdecfae 171 Gene3D G3DSA:3.30.1360.80 1 171 8.0E-73 T 15-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_01940 fe4538622b2bc9de4784e2788bdecfae 171 SUPERFAMILY SSF63411 4 162 2.84E-67 T 15-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NJ56_01940 fe4538622b2bc9de4784e2788bdecfae 171 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 155 8.0E-76 T 15-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_01940 fe4538622b2bc9de4784e2788bdecfae 171 PIRSF PIRSF006160 1 162 1.9E-66 T 15-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_01940 fe4538622b2bc9de4784e2788bdecfae 171 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 35.616 T 15-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_11825 d4f123205277fa4dc2f8f9d0151c744c 376 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 15-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11825 d4f123205277fa4dc2f8f9d0151c744c 376 Pfam PF00268 Ribonucleotide reductase, small chain 37 332 2.2E-46 T 15-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11825 d4f123205277fa4dc2f8f9d0151c744c 376 SUPERFAMILY SSF47240 3 340 3.28E-111 T 15-10-2018 IPR009078 Ferritin-like superfamily NJ56_11825 d4f123205277fa4dc2f8f9d0151c744c 376 Gene3D G3DSA:1.10.620.20 2 340 6.7E-146 T 15-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 NJ56_16640 184dafdb93cac4c6fc9a5b1bdf032e86 132 SUPERFAMILY SSF54593 6 130 1.73E-17 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_16640 184dafdb93cac4c6fc9a5b1bdf032e86 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 123 3.3E-4 T 15-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NJ56_16640 184dafdb93cac4c6fc9a5b1bdf032e86 132 Gene3D G3DSA:3.10.180.10 3 129 3.6E-44 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_08990 6367b7a9342dd2ea8d49369392c9fddc 310 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 38 62 - T 15-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 NJ56_08990 6367b7a9342dd2ea8d49369392c9fddc 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 250 263 - T 15-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 NJ56_08990 6367b7a9342dd2ea8d49369392c9fddc 310 Pfam PF00294 pfkB family carbohydrate kinase 19 295 3.7E-57 T 15-10-2018 IPR011611 Carbohydrate kinase PfkB NJ56_08990 6367b7a9342dd2ea8d49369392c9fddc 310 PIRSF PIRSF000535 1 309 8.0E-96 T 15-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 NJ56_08990 6367b7a9342dd2ea8d49369392c9fddc 310 Gene3D G3DSA:3.40.1190.20 1 309 6.2E-108 T 15-10-2018 IPR029056 Ribokinase-like NJ56_08990 6367b7a9342dd2ea8d49369392c9fddc 310 SUPERFAMILY SSF53613 4 296 1.33E-62 T 15-10-2018 IPR029056 Ribokinase-like NJ56_08990 6367b7a9342dd2ea8d49369392c9fddc 310 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 4 305 8.1E-89 T 15-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 NJ56_11115 0eee1d731e1323cbfb21ba52ff5f8f0d 345 Gene3D G3DSA:3.40.190.10 127 338 1.2E-119 T 15-10-2018 NJ56_11115 0eee1d731e1323cbfb21ba52ff5f8f0d 345 Gene3D G3DSA:3.40.190.10 39 308 1.2E-119 T 15-10-2018 NJ56_11115 0eee1d731e1323cbfb21ba52ff5f8f0d 345 Pfam PF13531 Bacterial extracellular solute-binding protein 46 292 1.9E-42 T 15-10-2018 NJ56_11115 0eee1d731e1323cbfb21ba52ff5f8f0d 345 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 25 339 3.2E-156 T 15-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 NJ56_11115 0eee1d731e1323cbfb21ba52ff5f8f0d 345 SUPERFAMILY SSF53850 32 339 1.18E-78 T 15-10-2018 NJ56_01295 e4d392d1fb3abff1b61dd60f6158c356 104 Gene3D G3DSA:1.10.10.10 5 104 3.1E-36 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_01295 e4d392d1fb3abff1b61dd60f6158c356 104 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 7 73 1.9E-15 T 15-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 NJ56_01295 e4d392d1fb3abff1b61dd60f6158c356 104 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 8 87 7.3E-27 T 15-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 NJ56_01295 e4d392d1fb3abff1b61dd60f6158c356 104 SUPERFAMILY SSF46767 6 88 1.96E-26 T 15-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 Gene3D G3DSA:1.10.730.10 389 526 7.9E-34 T 15-10-2018 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 Pfam PF01588 Putative tRNA binding domain 579 672 1.1E-20 T 15-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 1.1E-25 T 15-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 1.1E-25 T 15-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 1.1E-25 T 15-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 1.1E-25 T 15-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 384 395 1.1E-25 T 15-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 291 306 1.1E-25 T 15-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 SUPERFAMILY SSF50249 568 674 5.14E-28 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 SUPERFAMILY SSF57770 142 176 7.98E-13 T 15-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 Gene3D G3DSA:2.20.28.20 142 176 2.9E-163 T 15-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 SUPERFAMILY SSF52374 6 387 1.3E-103 T 15-10-2018 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 15-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 9 535 2.8E-202 T 15-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 Pfam PF09334 tRNA synthetases class I (M) 9 396 5.6E-165 T 15-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 555 675 7.1E-43 T 15-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 545 41.505 T 15-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 Gene3D G3DSA:3.40.50.620 9 384 2.9E-163 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 SUPERFAMILY SSF47323 390 544 5.05E-44 T 15-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_17320 bd6a1b79df15c78d32c606de64151eca 675 Gene3D G3DSA:2.40.50.140 566 675 4.1E-29 T 15-10-2018 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 SUPERFAMILY SSF55347 176 488 1.14E-112 T 15-10-2018 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 Gene3D G3DSA:3.30.360.10 176 476 1.5E-168 T 15-10-2018 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 9 489 91.164 T 15-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 PIRSF PIRSF000110 1 491 1.1E-182 T 15-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 Gene3D G3DSA:3.40.50.720 12 437 1.5E-168 T 15-10-2018 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 489 5.5E-200 T 15-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 236 252 1.4E-47 T 15-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 218 235 1.4E-47 T 15-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 142 155 1.4E-47 T 15-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 166 194 1.4E-47 T 15-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 327 353 1.4E-47 T 15-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 SUPERFAMILY SSF51735 5 189 4.92E-58 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 188 488 1.3E-115 T 15-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 176 182 - T 15-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 NJ56_15795 b3ac0d2af5a2f82dd83c10245aa54057 491 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 13 186 5.5E-59 T 15-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 NJ56_05995 95887177c283af69ca7efab5965e76e3 91 Pfam PF01192 RNA polymerase Rpb6 10 60 8.2E-17 T 15-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 NJ56_05995 95887177c283af69ca7efab5965e76e3 91 Gene3D G3DSA:3.90.940.10 1 91 1.3E-30 T 15-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 NJ56_05995 95887177c283af69ca7efab5965e76e3 91 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 2.1E-28 T 15-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_05995 95887177c283af69ca7efab5965e76e3 91 SMART SM01409 8 61 1.0E-16 T 15-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 NJ56_05995 95887177c283af69ca7efab5965e76e3 91 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.134 T 15-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_05995 95887177c283af69ca7efab5965e76e3 91 SUPERFAMILY SSF63562 1 79 2.44E-25 T 15-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 445 47.577 T 15-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 SUPERFAMILY SSF55957 357 445 5.49E-21 T 15-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 Gene3D G3DSA:3.40.120.10 257 339 1.4E-64 T 15-10-2018 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 SUPERFAMILY SSF53738 156 256 1.69E-30 T 15-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 Gene3D G3DSA:3.40.120.10 174 362 1.4E-64 T 15-10-2018 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 1.1E-13 T 15-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 1.1E-13 T 15-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 1.1E-13 T 15-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 SUPERFAMILY SSF53738 2 181 1.14E-49 T 15-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 443 2.9E-195 T 15-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 Gene3D G3DSA:3.30.310.50 370 446 1.0E-23 T 15-10-2018 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 15-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 8.5E-20 T 15-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 442 7.4E-16 T 15-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 Gene3D G3DSA:3.40.120.10 3 154 1.3E-48 T 15-10-2018 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 SUPERFAMILY SSF53738 258 365 1.96E-31 T 15-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 2.2E-45 T 15-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_03815 112b56ab7772430326f9a3545b761a15 446 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 364 3.8E-32 T 15-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NJ56_02220 abebfce7d2304b331709405e7b68f6b8 101 SUPERFAMILY SSF140129 29 95 4.58E-10 T 15-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 NJ56_02220 abebfce7d2304b331709405e7b68f6b8 101 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 38 100 8.2E-10 T 15-10-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 NJ56_02220 abebfce7d2304b331709405e7b68f6b8 101 Gene3D G3DSA:1.20.58.90 24 101 2.1E-11 T 15-10-2018 NJ56_01100 fce8396dc83bb43aec1b993e94f8b24e 409 Gene3D G3DSA:3.40.50.2000 1 205 2.2E-10 T 15-10-2018 NJ56_01100 fce8396dc83bb43aec1b993e94f8b24e 409 Gene3D G3DSA:3.40.50.2000 206 384 2.7E-17 T 15-10-2018 NJ56_01100 fce8396dc83bb43aec1b993e94f8b24e 409 Pfam PF00534 Glycosyl transferases group 1 211 378 2.0E-11 T 15-10-2018 IPR001296 Glycosyl transferase, family 1 NJ56_01100 fce8396dc83bb43aec1b993e94f8b24e 409 SUPERFAMILY SSF53756 18 395 2.23E-29 T 15-10-2018 NJ56_16325 44ce5ed66a79be2a5c066d27d98cca35 239 SMART SM00448 2 117 2.3E-21 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_16325 44ce5ed66a79be2a5c066d27d98cca35 239 SUPERFAMILY SSF52172 1 140 4.41E-30 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_16325 44ce5ed66a79be2a5c066d27d98cca35 239 PIRSF PIRSF006171 1 230 1.7E-76 T 15-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 NJ56_16325 44ce5ed66a79be2a5c066d27d98cca35 239 Gene3D G3DSA:3.40.50.2300 1 147 1.9E-26 T 15-10-2018 NJ56_16325 44ce5ed66a79be2a5c066d27d98cca35 239 Pfam PF00072 Response regulator receiver domain 4 117 7.3E-21 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_15365 c2cd7b353af605b0cd15a16acf2a0a4d 244 Pfam PF16031 TonB N-terminal region 38 163 4.1E-21 T 15-10-2018 NJ56_15365 c2cd7b353af605b0cd15a16acf2a0a4d 244 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 167 227 6.2E-17 T 15-10-2018 IPR006260 TonB/TolA, C-terminal NJ56_15365 c2cd7b353af605b0cd15a16acf2a0a4d 244 Gene3D G3DSA:3.30.2420.10 156 244 2.9E-27 T 15-10-2018 NJ56_15365 c2cd7b353af605b0cd15a16acf2a0a4d 244 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 166 227 7.8E-16 T 15-10-2018 IPR037682 TonB, C-terminal GO:0055085 NJ56_15365 c2cd7b353af605b0cd15a16acf2a0a4d 244 SUPERFAMILY SSF74653 162 230 4.19E-18 T 15-10-2018 NJ56_15365 c2cd7b353af605b0cd15a16acf2a0a4d 244 PRINTS PR01374 Gram-negative bacterial tonB protein signature 182 200 1.3E-30 T 15-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 NJ56_15365 c2cd7b353af605b0cd15a16acf2a0a4d 244 PRINTS PR01374 Gram-negative bacterial tonB protein signature 95 105 1.3E-30 T 15-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 NJ56_15365 c2cd7b353af605b0cd15a16acf2a0a4d 244 PRINTS PR01374 Gram-negative bacterial tonB protein signature 201 218 1.3E-30 T 15-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 NJ56_15365 c2cd7b353af605b0cd15a16acf2a0a4d 244 PRINTS PR01374 Gram-negative bacterial tonB protein signature 161 182 1.3E-30 T 15-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 NJ56_08445 1bdb4019cee7660ed4387faf5f0a6077 866 Pfam PF03797 Autotransporter beta-domain 589 844 5.1E-35 T 15-10-2018 IPR005546 Autotransporter beta-domain NJ56_08445 1bdb4019cee7660ed4387faf5f0a6077 866 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 301 331 2.4E-8 T 15-10-2018 IPR013425 Autotransporter-associated beta strand repeat NJ56_08445 1bdb4019cee7660ed4387faf5f0a6077 866 SUPERFAMILY SSF103515 547 866 7.72E-37 T 15-10-2018 IPR036709 Autotransporter beta-domain superfamily NJ56_08445 1bdb4019cee7660ed4387faf5f0a6077 866 SMART SM00869 586 855 2.7E-24 T 15-10-2018 IPR005546 Autotransporter beta-domain NJ56_08445 1bdb4019cee7660ed4387faf5f0a6077 866 Pfam PF12951 Passenger-associated-transport-repeat 302 331 5.5E-7 T 15-10-2018 IPR013425 Autotransporter-associated beta strand repeat NJ56_08445 1bdb4019cee7660ed4387faf5f0a6077 866 SUPERFAMILY SSF51126 136 529 6.09E-35 T 15-10-2018 IPR011050 Pectin lyase fold/virulence factor NJ56_08445 1bdb4019cee7660ed4387faf5f0a6077 866 Gene3D G3DSA:2.40.128.130 544 866 7.0E-76 T 15-10-2018 IPR036709 Autotransporter beta-domain superfamily NJ56_08445 1bdb4019cee7660ed4387faf5f0a6077 866 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 420 866 1.4E-81 T 15-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 NJ56_08445 1bdb4019cee7660ed4387faf5f0a6077 866 Gene3D G3DSA:2.160.20.20 225 531 5.7E-30 T 15-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily NJ56_14360 80de9bff1233650fdf6bcbc710186e5a 126 Hamap MF_00538 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF [arnF]. 2 126 22.888 T 15-10-2018 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF NJ56_14360 80de9bff1233650fdf6bcbc710186e5a 126 Gene3D G3DSA:1.10.3730.20 30 126 5.2E-6 T 15-10-2018 NJ56_14360 80de9bff1233650fdf6bcbc710186e5a 126 SUPERFAMILY SSF103481 43 124 1.83E-9 T 15-10-2018 NJ56_09085 c8fac6136037ba1d7242300cb9e77db8 376 Pfam PF04055 Radical SAM superfamily 11 179 4.6E-17 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_09085 c8fac6136037ba1d7242300cb9e77db8 376 Gene3D G3DSA:3.80.30.20 2 291 3.7E-99 T 15-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe NJ56_09085 c8fac6136037ba1d7242300cb9e77db8 376 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 368 9.4E-142 T 15-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 NJ56_09085 c8fac6136037ba1d7242300cb9e77db8 376 SMART SM00729 6 223 7.8E-50 T 15-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 NJ56_09085 c8fac6136037ba1d7242300cb9e77db8 376 SUPERFAMILY SSF102114 5 376 2.62E-109 T 15-10-2018 NJ56_05625 098fc3157ac2957159e4524f2e18c65d 257 Hamap MF_00082 Acetylglutamate kinase [argB]. 1 250 43.5 T 15-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 NJ56_05625 098fc3157ac2957159e4524f2e18c65d 257 Gene3D G3DSA:3.40.1160.10 1 256 6.4E-72 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_05625 098fc3157ac2957159e4524f2e18c65d 257 Pfam PF00696 Amino acid kinase family 4 234 4.8E-36 T 15-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 NJ56_05625 098fc3157ac2957159e4524f2e18c65d 257 PIRSF PIRSF000728 1 257 1.9E-69 T 15-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 NJ56_05625 098fc3157ac2957159e4524f2e18c65d 257 TIGRFAM TIGR00761 argB: acetylglutamate kinase 4 233 6.8E-71 T 15-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 NJ56_05625 098fc3157ac2957159e4524f2e18c65d 257 SUPERFAMILY SSF53633 2 256 1.83E-57 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_17270 8708c54aeb595ab29ec9aefaf808a195 204 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 105 1.0E-25 T 15-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 NJ56_17270 8708c54aeb595ab29ec9aefaf808a195 204 SUPERFAMILY SSF101386 114 203 7.85E-24 T 15-10-2018 NJ56_17270 8708c54aeb595ab29ec9aefaf808a195 204 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 116 201 1.5E-16 T 15-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 NJ56_17270 8708c54aeb595ab29ec9aefaf808a195 204 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 112 198 18.462 T 15-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 NJ56_17270 8708c54aeb595ab29ec9aefaf808a195 204 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 203 37.567 T 15-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 NJ56_17270 8708c54aeb595ab29ec9aefaf808a195 204 Gene3D G3DSA:3.10.20.400 3 97 2.8E-34 T 15-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 NJ56_17270 8708c54aeb595ab29ec9aefaf808a195 204 Gene3D G3DSA:1.10.287.1080 112 204 3.9E-28 T 15-10-2018 NJ56_17270 8708c54aeb595ab29ec9aefaf808a195 204 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 105 4.2E-31 T 15-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 NJ56_17270 8708c54aeb595ab29ec9aefaf808a195 204 SUPERFAMILY SSF141734 6 122 8.11E-46 T 15-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 NJ56_17270 8708c54aeb595ab29ec9aefaf808a195 204 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 115 197 1.4E-30 T 15-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 NJ56_14045 36f5ea2b6ea9a26ddcac2f9b9a5c27ff 201 SUPERFAMILY SSF56349 9 200 6.18E-29 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_14045 36f5ea2b6ea9a26ddcac2f9b9a5c27ff 201 Gene3D G3DSA:1.10.443.10 20 201 6.4E-38 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_14045 36f5ea2b6ea9a26ddcac2f9b9a5c27ff 201 Pfam PF00589 Phage integrase family 30 195 4.6E-21 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_17430 2469a33025878c9e22b6d5bea06f16ca 531 Pfam PF12848 ABC transporter 224 309 4.2E-20 T 15-10-2018 IPR032781 ABC-transporter extension domain NJ56_17430 2469a33025878c9e22b6d5bea06f16ca 531 SUPERFAMILY SSF52540 6 237 3.76E-44 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17430 2469a33025878c9e22b6d5bea06f16ca 531 Gene3D G3DSA:3.40.50.300 282 530 7.8E-57 T 15-10-2018 NJ56_17430 2469a33025878c9e22b6d5bea06f16ca 531 SUPERFAMILY SSF52540 298 523 2.95E-47 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17430 2469a33025878c9e22b6d5bea06f16ca 531 Pfam PF00005 ABC transporter 336 467 1.6E-24 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_17430 2469a33025878c9e22b6d5bea06f16ca 531 SMART SM00382 26 228 4.0E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17430 2469a33025878c9e22b6d5bea06f16ca 531 SMART SM00382 344 512 2.2E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17430 2469a33025878c9e22b6d5bea06f16ca 531 Pfam PF00005 ABC transporter 18 184 1.2E-18 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_17430 2469a33025878c9e22b6d5bea06f16ca 531 Gene3D G3DSA:3.40.50.300 2 279 2.7E-55 T 15-10-2018 NJ56_17350 469e1a83a15909379aecb5b9c2a760f6 151 SUPERFAMILY SSF54593 15 140 5.1E-26 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_17350 469e1a83a15909379aecb5b9c2a760f6 151 Gene3D G3DSA:3.10.180.10 6 150 1.8E-21 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_17350 469e1a83a15909379aecb5b9c2a760f6 151 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 135 3.1E-9 T 15-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NJ56_09665 7369172398d0ae2fdd3f22a7333c98f1 130 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 126 32.125 T 15-10-2018 IPR020911 Uncharacterised protein family UPF0325 NJ56_09665 7369172398d0ae2fdd3f22a7333c98f1 130 Pfam PF11944 Protein of unknown function (DUF3461) 1 125 7.9E-55 T 15-10-2018 IPR020911 Uncharacterised protein family UPF0325 NJ56_09665 7369172398d0ae2fdd3f22a7333c98f1 130 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 125 1.0E-63 T 15-10-2018 IPR020911 Uncharacterised protein family UPF0325 NJ56_02945 3dc385eb80839da1ffdf62875d793b7e 273 SUPERFAMILY SSF55347 131 240 6.98E-37 T 15-10-2018 NJ56_02945 3dc385eb80839da1ffdf62875d793b7e 273 SUPERFAMILY SSF51735 4 272 9.63E-53 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_02945 3dc385eb80839da1ffdf62875d793b7e 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 269 34.762 T 15-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_02945 3dc385eb80839da1ffdf62875d793b7e 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 132 268 3.2E-42 T 15-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_02945 3dc385eb80839da1ffdf62875d793b7e 273 Gene3D G3DSA:3.30.360.10 131 238 1.3E-102 T 15-10-2018 NJ56_02945 3dc385eb80839da1ffdf62875d793b7e 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 154 171 - T 15-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_02945 3dc385eb80839da1ffdf62875d793b7e 273 Gene3D G3DSA:3.40.50.720 7 268 1.3E-102 T 15-10-2018 NJ56_02945 3dc385eb80839da1ffdf62875d793b7e 273 PIRSF PIRSF000161 4 272 1.1E-88 T 15-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_02945 3dc385eb80839da1ffdf62875d793b7e 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 129 9.1E-42 T 15-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_02945 3dc385eb80839da1ffdf62875d793b7e 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 5 269 1.0E-106 T 15-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_17085 a5fb6e8ca2104a1f4a3ec07628e90bf7 107 Gene3D G3DSA:3.30.110.70 2 107 1.2E-47 T 15-10-2018 NJ56_17085 a5fb6e8ca2104a1f4a3ec07628e90bf7 107 Pfam PF01906 Putative heavy-metal-binding 2 105 9.3E-41 T 15-10-2018 IPR002765 Uncharacterised protein family UPF0145 NJ56_17085 a5fb6e8ca2104a1f4a3ec07628e90bf7 107 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 23.912 T 15-10-2018 IPR002765 Uncharacterised protein family UPF0145 NJ56_17085 a5fb6e8ca2104a1f4a3ec07628e90bf7 107 SUPERFAMILY SSF117782 3 105 2.88E-38 T 15-10-2018 IPR035439 UPF0145 domain superfamily NJ56_02045 da7f0abeff2b0cc9ac3f248eab88546e 498 Gene3D G3DSA:3.30.450.90 87 219 4.4E-52 T 15-10-2018 NJ56_02045 da7f0abeff2b0cc9ac3f248eab88546e 498 Gene3D G3DSA:3.30.300.160 2 86 7.7E-12 T 15-10-2018 NJ56_02045 da7f0abeff2b0cc9ac3f248eab88546e 498 SUPERFAMILY SSF160246 9 73 1.86E-11 T 15-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily NJ56_02045 da7f0abeff2b0cc9ac3f248eab88546e 498 SMART SM00382 247 373 6.5E-5 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_02045 da7f0abeff2b0cc9ac3f248eab88546e 498 SUPERFAMILY SSF52540 105 493 8.18E-104 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02045 da7f0abeff2b0cc9ac3f248eab88546e 498 Gene3D G3DSA:3.40.50.300 220 497 5.7E-116 T 15-10-2018 NJ56_02045 da7f0abeff2b0cc9ac3f248eab88546e 498 Pfam PF00437 Type II/IV secretion system protein 121 386 1.9E-90 T 15-10-2018 IPR001482 Type II/IV secretion system protein NJ56_02045 da7f0abeff2b0cc9ac3f248eab88546e 498 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 9 493 2.9E-208 T 15-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 NJ56_02045 da7f0abeff2b0cc9ac3f248eab88546e 498 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 314 328 - T 15-10-2018 IPR001482 Type II/IV secretion system protein NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 SMART SM00480 17 362 7.0E-165 T 15-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 SUPERFAMILY SSF55979 1 121 2.3E-26 T 15-10-2018 NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 7.3E-44 T 15-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 Gene3D G3DSA:3.10.150.10 124 247 2.8E-39 T 15-10-2018 NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 SUPERFAMILY SSF55979 125 244 8.64E-31 T 15-10-2018 NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 3.7E-111 T 15-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 Gene3D G3DSA:3.10.150.10 1 123 3.3E-42 T 15-10-2018 NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 243 5.3E-40 T 15-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 3.4E-38 T 15-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 Gene3D G3DSA:3.10.150.10 248 366 2.0E-41 T 15-10-2018 NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 SUPERFAMILY SSF55979 245 366 6.02E-37 T 15-10-2018 NJ56_06395 7677cd6e73663a4a5a670ab2c3d7e3ba 366 PIRSF PIRSF000804 1 366 1.0E-115 T 15-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 NJ56_13835 bf976570854707f406912c6dc4bcefad 85 Pfam PF13269 Protein of unknown function (DUF4060) 7 78 2.0E-38 T 15-10-2018 IPR025135 Protein of unknown function DUF4060 NJ56_04090 bb0758b11cfebef254c23311018c5092 419 SUPERFAMILY SSF117892 127 258 3.14E-20 T 15-10-2018 IPR036013 Band 7/SPFH domain superfamily NJ56_04090 bb0758b11cfebef254c23311018c5092 419 PRINTS PR00721 Stomatin signature 148 169 1.1E-7 T 15-10-2018 IPR001972 Stomatin family GO:0016020 NJ56_04090 bb0758b11cfebef254c23311018c5092 419 PRINTS PR00721 Stomatin signature 183 200 1.1E-7 T 15-10-2018 IPR001972 Stomatin family GO:0016020 NJ56_04090 bb0758b11cfebef254c23311018c5092 419 PRINTS PR00721 Stomatin signature 101 123 1.1E-7 T 15-10-2018 IPR001972 Stomatin family GO:0016020 NJ56_04090 bb0758b11cfebef254c23311018c5092 419 Pfam PF01145 SPFH domain / Band 7 family 98 270 5.3E-30 T 15-10-2018 IPR001107 Band 7 domain NJ56_04090 bb0758b11cfebef254c23311018c5092 419 Gene3D G3DSA:3.30.479.30 136 245 4.2E-18 T 15-10-2018 NJ56_04090 bb0758b11cfebef254c23311018c5092 419 SMART SM00244 94 254 5.2E-43 T 15-10-2018 IPR001107 Band 7 domain NJ56_04090 bb0758b11cfebef254c23311018c5092 419 TIGRFAM TIGR01933 hflK: HflK protein 96 355 1.5E-119 T 15-10-2018 IPR010201 HflK GO:0016021 NJ56_04090 bb0758b11cfebef254c23311018c5092 419 Pfam PF12221 Bacterial membrane protein N terminal 1 58 4.8E-14 T 15-10-2018 IPR020980 Menbrane protein HflK, N-terminal NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 Pfam PF13365 Trypsin-like peptidase domain 81 215 1.3E-28 T 15-10-2018 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 Gene3D G3DSA:2.30.42.10 257 357 5.7E-20 T 15-10-2018 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 SMART SM00228 257 343 1.0E-11 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 2 356 1.0E-154 T 15-10-2018 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 Gene3D G3DSA:2.40.10.10 142 256 3.6E-38 T 15-10-2018 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 SUPERFAMILY SSF50494 52 254 4.86E-58 T 15-10-2018 IPR009003 Peptidase S1, PA clan NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 PRINTS PR00834 HtrA/DegQ protease family signature 151 175 1.2E-47 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 PRINTS PR00834 HtrA/DegQ protease family signature 90 102 1.2E-47 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 PRINTS PR00834 HtrA/DegQ protease family signature 186 203 1.2E-47 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 PRINTS PR00834 HtrA/DegQ protease family signature 301 313 1.2E-47 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 PRINTS PR00834 HtrA/DegQ protease family signature 111 131 1.2E-47 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 PRINTS PR00834 HtrA/DegQ protease family signature 208 225 1.2E-47 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 SUPERFAMILY SSF50156 239 351 2.63E-20 T 15-10-2018 IPR036034 PDZ superfamily GO:0005515 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 Gene3D G3DSA:2.40.10.10 30 141 2.4E-28 T 15-10-2018 NJ56_08230 29e4209aa79844dcb2b15abd833a13b8 358 Pfam PF13180 PDZ domain 283 351 1.1E-12 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_06075 de6210fb56f05e9ee7fc91b6351627ba 457 Pfam PF06969 HemN C-terminal domain 364 431 1.1E-10 T 15-10-2018 IPR010723 HemN, C-terminal NJ56_06075 de6210fb56f05e9ee7fc91b6351627ba 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 8 457 3.0E-217 T 15-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 NJ56_06075 de6210fb56f05e9ee7fc91b6351627ba 457 SMART SM00729 52 272 9.1E-55 T 15-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 NJ56_06075 de6210fb56f05e9ee7fc91b6351627ba 457 Pfam PF04055 Radical SAM superfamily 57 226 7.4E-17 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_06075 de6210fb56f05e9ee7fc91b6351627ba 457 Gene3D G3DSA:1.10.10.920 364 457 1.4E-36 T 15-10-2018 NJ56_06075 de6210fb56f05e9ee7fc91b6351627ba 457 PIRSF PIRSF000167 4 454 8.7E-173 T 15-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 NJ56_06075 de6210fb56f05e9ee7fc91b6351627ba 457 Gene3D G3DSA:3.80.30.20 1 363 2.4E-136 T 15-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe NJ56_06075 de6210fb56f05e9ee7fc91b6351627ba 457 SUPERFAMILY SSF102114 6 444 1.96E-145 T 15-10-2018 NJ56_10735 2d9d8b636cc3f0191441859600105a81 469 Pfam PF07690 Major Facilitator Superfamily 19 409 2.1E-45 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_10735 2d9d8b636cc3f0191441859600105a81 469 Gene3D G3DSA:1.20.1250.20 269 465 3.4E-13 T 15-10-2018 NJ56_10735 2d9d8b636cc3f0191441859600105a81 469 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 20 439 3.6E-69 T 15-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 NJ56_10735 2d9d8b636cc3f0191441859600105a81 469 Gene3D G3DSA:1.20.1720.10 16 248 2.9E-44 T 15-10-2018 NJ56_10735 2d9d8b636cc3f0191441859600105a81 469 Hamap MF_01577 Putative multidrug resistance protein MdtD [mdtD]. 5 469 42.036 T 15-10-2018 IPR023721 Multidrug resistance protein MdtD, putative NJ56_10735 2d9d8b636cc3f0191441859600105a81 469 SUPERFAMILY SSF103473 10 456 4.32E-58 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_10735 2d9d8b636cc3f0191441859600105a81 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 18 42 4.4E-8 T 15-10-2018 NJ56_10735 2d9d8b636cc3f0191441859600105a81 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 400 419 4.4E-8 T 15-10-2018 NJ56_10735 2d9d8b636cc3f0191441859600105a81 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 139 163 4.4E-8 T 15-10-2018 NJ56_10735 2d9d8b636cc3f0191441859600105a81 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 203 221 4.4E-8 T 15-10-2018 NJ56_10735 2d9d8b636cc3f0191441859600105a81 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 109 129 4.4E-8 T 15-10-2018 NJ56_02790 36ea53f11c79609358e74d1609f31396 575 SUPERFAMILY SSF52467 188 362 4.75E-63 T 15-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily NJ56_02790 36ea53f11c79609358e74d1609f31396 575 SUPERFAMILY SSF52518 2 179 1.33E-66 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_02790 36ea53f11c79609358e74d1609f31396 575 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 546 2.3E-49 T 15-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NJ56_02790 36ea53f11c79609358e74d1609f31396 575 Gene3D G3DSA:3.40.50.1220 190 360 4.0E-61 T 15-10-2018 NJ56_02790 36ea53f11c79609358e74d1609f31396 575 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 431 450 - T 15-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 NJ56_02790 36ea53f11c79609358e74d1609f31396 575 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 570 4.6E-278 T 15-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 NJ56_02790 36ea53f11c79609358e74d1609f31396 575 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 1.7E-46 T 15-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 NJ56_02790 36ea53f11c79609358e74d1609f31396 575 SUPERFAMILY SSF52518 368 572 2.32E-68 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_02790 36ea53f11c79609358e74d1609f31396 575 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 170 3.8E-60 T 15-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 NJ56_02790 36ea53f11c79609358e74d1609f31396 575 Gene3D G3DSA:3.40.50.970 364 562 3.3E-67 T 15-10-2018 NJ56_02790 36ea53f11c79609358e74d1609f31396 575 Gene3D G3DSA:3.40.50.970 1 178 1.4E-72 T 15-10-2018 NJ56_12215 0619cbcc72866bae09006c4f31a4b3fa 235 SMART SM00363 1 59 3.5E-7 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_12215 0619cbcc72866bae09006c4f31a4b3fa 235 Gene3D G3DSA:3.30.70.1560 128 209 1.4E-59 T 15-10-2018 NJ56_12215 0619cbcc72866bae09006c4f31a4b3fa 235 Gene3D G3DSA:3.30.70.580 63 227 1.4E-59 T 15-10-2018 NJ56_12215 0619cbcc72866bae09006c4f31a4b3fa 235 Pfam PF00849 RNA pseudouridylate synthase 62 190 2.8E-17 T 15-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_12215 0619cbcc72866bae09006c4f31a4b3fa 235 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 224 9.5E-58 T 15-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 NJ56_12215 0619cbcc72866bae09006c4f31a4b3fa 235 SUPERFAMILY SSF55120 61 227 3.36E-47 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_12215 0619cbcc72866bae09006c4f31a4b3fa 235 SUPERFAMILY SSF55174 1 55 6.92E-12 T 15-10-2018 NJ56_12215 0619cbcc72866bae09006c4f31a4b3fa 235 Pfam PF01479 S4 domain 1 47 3.1E-8 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_12215 0619cbcc72866bae09006c4f31a4b3fa 235 Gene3D G3DSA:3.10.290.10 1 62 2.3E-20 T 15-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 NJ56_12215 0619cbcc72866bae09006c4f31a4b3fa 235 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 15-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 NJ56_16680 fd1af08658706529467b729346c77cb2 109 SUPERFAMILY SSF69721 2 109 6.41E-42 T 15-10-2018 IPR025526 DsrC-like domain superfamily NJ56_16680 fd1af08658706529467b729346c77cb2 109 PIRSF PIRSF006223 2 109 3.2E-47 T 15-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE NJ56_16680 fd1af08658706529467b729346c77cb2 109 Gene3D G3DSA:1.10.10.370 39 109 1.1E-32 T 15-10-2018 NJ56_16680 fd1af08658706529467b729346c77cb2 109 Gene3D G3DSA:3.30.1420.10 1 37 5.0E-13 T 15-10-2018 NJ56_16680 fd1af08658706529467b729346c77cb2 109 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 2 109 5.1E-51 T 15-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE NJ56_16680 fd1af08658706529467b729346c77cb2 109 Pfam PF04358 DsrC like protein 3 109 1.9E-46 T 15-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE NJ56_17570 d44117153995ecb628b1a7b7d9bb50cb 277 SMART SM00382 49 270 1.9E-5 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17570 d44117153995ecb628b1a7b7d9bb50cb 277 Pfam PF00005 ABC transporter 40 201 3.3E-33 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_17570 d44117153995ecb628b1a7b7d9bb50cb 277 Gene3D G3DSA:3.40.50.300 6 272 4.8E-61 T 15-10-2018 NJ56_17570 d44117153995ecb628b1a7b7d9bb50cb 277 SUPERFAMILY SSF52540 23 261 9.61E-57 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17570 d44117153995ecb628b1a7b7d9bb50cb 277 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 23 268 2.5E-90 T 15-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 NJ56_17570 d44117153995ecb628b1a7b7d9bb50cb 277 ProSitePatterns PS00211 ABC transporters family signature. 173 187 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_06815 dee698ae36fe8614a86809fbda3e04dc 247 SUPERFAMILY SSF53335 5 246 7.56E-75 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_06815 dee698ae36fe8614a86809fbda3e04dc 247 Gene3D G3DSA:3.40.50.150 57 247 1.6E-74 T 15-10-2018 NJ56_06815 dee698ae36fe8614a86809fbda3e04dc 247 Gene3D G3DSA:3.40.1630.10 1 56 5.8E-28 T 15-10-2018 NJ56_06815 dee698ae36fe8614a86809fbda3e04dc 247 Pfam PF04445 Putative SAM-dependent methyltransferase 19 246 1.4E-108 T 15-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 NJ56_06815 dee698ae36fe8614a86809fbda3e04dc 247 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 3 247 36.86 T 15-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 NJ56_01775 1b47465d0710fca7a97dbead276f3d16 815 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 360 507 5.2E-11 T 15-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 NJ56_01775 1b47465d0710fca7a97dbead276f3d16 815 Gene3D G3DSA:2.40.110.10 236 359 4.0E-100 T 15-10-2018 NJ56_01775 1b47465d0710fca7a97dbead276f3d16 815 Gene3D G3DSA:1.20.140.10 360 507 4.0E-100 T 15-10-2018 NJ56_01775 1b47465d0710fca7a97dbead276f3d16 815 SUPERFAMILY SSF47203 360 507 3.87E-20 T 15-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 NJ56_01775 1b47465d0710fca7a97dbead276f3d16 815 Gene3D G3DSA:1.10.540.10 122 235 4.0E-100 T 15-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 NJ56_01775 1b47465d0710fca7a97dbead276f3d16 815 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 147 233 1.7E-16 T 15-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 NJ56_01775 1b47465d0710fca7a97dbead276f3d16 815 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 237 328 9.1E-9 T 15-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 NJ56_01775 1b47465d0710fca7a97dbead276f3d16 815 Pfam PF09317 Domain of unknown function (DUF1974) 514 792 6.5E-118 T 15-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 NJ56_01775 1b47465d0710fca7a97dbead276f3d16 815 SUPERFAMILY SSF56645 119 355 3.93E-45 T 15-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 Gene3D G3DSA:3.20.70.20 209 732 4.2E-154 T 15-10-2018 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 SUPERFAMILY SSF51998 222 741 1.19E-166 T 15-10-2018 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 SUPERFAMILY SSF48168 10 221 1.96E-73 T 15-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 Pfam PF03477 ATP cone domain 6 92 1.1E-15 T 15-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 2.3E-179 T 15-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 Gene3D G3DSA:1.10.1650.20 341 394 4.2E-154 T 15-10-2018 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 141 219 2.9E-13 T 15-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 2.4E-38 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 2.4E-38 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 2.4E-38 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 2.4E-38 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 2.4E-38 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 2.4E-38 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_11830 22024fbb541c585acc8cf2597afa8972 761 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 731 3.2E-117 T 15-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_04740 eb3d8f807732cf54eab4a56e24048aa9 261 Pfam PF05690 Thiazole biosynthesis protein ThiG 3 247 8.9E-108 T 15-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 NJ56_04740 eb3d8f807732cf54eab4a56e24048aa9 261 Gene3D G3DSA:3.20.20.70 1 261 5.2E-110 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_04740 eb3d8f807732cf54eab4a56e24048aa9 261 SUPERFAMILY SSF110399 1 237 7.32E-83 T 15-10-2018 NJ56_04740 eb3d8f807732cf54eab4a56e24048aa9 261 Hamap MF_00443 Thiazole synthase [thiG]. 1 253 43.203 T 15-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 NJ56_02475 0d15b07f745d078fd15272287d79ce01 235 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 234 53.676 T 15-10-2018 IPR005224 Sugar fermentation stimulation protein NJ56_02475 0d15b07f745d078fd15272287d79ce01 235 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 5 228 9.7E-80 T 15-10-2018 IPR005224 Sugar fermentation stimulation protein NJ56_02475 0d15b07f745d078fd15272287d79ce01 235 Gene3D G3DSA:2.40.50.580 1 80 1.5E-28 T 15-10-2018 NJ56_02475 0d15b07f745d078fd15272287d79ce01 235 Pfam PF03749 Sugar fermentation stimulation protein 13 226 5.8E-75 T 15-10-2018 IPR005224 Sugar fermentation stimulation protein NJ56_02475 0d15b07f745d078fd15272287d79ce01 235 Gene3D G3DSA:3.40.1350.60 81 233 1.8E-55 T 15-10-2018 NJ56_03625 73e8f1f85f6fb05bdd32f775d01f1107 143 SUPERFAMILY SSF89946 3 123 3.4E-41 T 15-10-2018 IPR036701 RraB-like superfamily NJ56_03625 73e8f1f85f6fb05bdd32f775d01f1107 143 PIRSF PIRSF018193 1 143 3.6E-67 T 15-10-2018 IPR016716 Regulator of ribonuclease activity B NJ56_03625 73e8f1f85f6fb05bdd32f775d01f1107 143 Pfam PF06877 Regulator of ribonuclease activity B 12 113 1.1E-33 T 15-10-2018 IPR009671 Regulator of ribonuclease activity B domain NJ56_03625 73e8f1f85f6fb05bdd32f775d01f1107 143 Gene3D G3DSA:3.30.70.970 1 125 2.4E-49 T 15-10-2018 IPR036701 RraB-like superfamily NJ56_03625 73e8f1f85f6fb05bdd32f775d01f1107 143 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 4 117 30.895 T 15-10-2018 IPR016716 Regulator of ribonuclease activity B NJ56_13290 9bdd0ea49b380a9a0e4dccc0d26e333d 116 Gene3D G3DSA:3.10.450.40 5 116 4.0E-21 T 15-10-2018 NJ56_13290 9bdd0ea49b380a9a0e4dccc0d26e333d 116 Pfam PF04965 Gene 25-like lysozyme 18 104 3.9E-15 T 15-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD NJ56_13290 9bdd0ea49b380a9a0e4dccc0d26e333d 116 SUPERFAMILY SSF160719 14 115 6.15E-30 T 15-10-2018 NJ56_08970 cfee0a7b0cd106bd04ba7a4a950b5bb6 330 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 28 323 1.1E-116 T 15-10-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 NJ56_08970 cfee0a7b0cd106bd04ba7a4a950b5bb6 330 Gene3D G3DSA:3.40.50.1100 57 153 5.5E-124 T 15-10-2018 NJ56_08970 cfee0a7b0cd106bd04ba7a4a950b5bb6 330 Gene3D G3DSA:3.40.50.1100 14 317 5.5E-124 T 15-10-2018 NJ56_08970 cfee0a7b0cd106bd04ba7a4a950b5bb6 330 SUPERFAMILY SSF53686 10 320 3.01E-92 T 15-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NJ56_08970 cfee0a7b0cd106bd04ba7a4a950b5bb6 330 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 312 4.1E-78 T 15-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme NJ56_08970 cfee0a7b0cd106bd04ba7a4a950b5bb6 330 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 49 62 - T 15-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 2.5E-38 T 15-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 Gene3D G3DSA:3.40.50.720 6 259 1.8E-104 T 15-10-2018 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 2.2E-67 T 15-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 37.425 T 15-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 15-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 15-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 Gene3D G3DSA:3.40.50.10860 8 276 1.8E-104 T 15-10-2018 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 SUPERFAMILY SSF51735 123 286 4.21E-51 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 SUPERFAMILY SSF53223 1 122 1.44E-39 T 15-10-2018 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.7E-87 T 15-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 1.7E-87 T 15-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 1.7E-87 T 15-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 1.7E-87 T 15-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.7E-87 T 15-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.7E-87 T 15-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_00935 f2b3e9b1190cc0834140156548b62a65 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.7E-87 T 15-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 NJ56_14720 cc7d6993cd1df88fc8f662152b630f82 75 Pfam PF06667 Phage shock protein B 4 74 1.3E-33 T 15-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 NJ56_14720 cc7d6993cd1df88fc8f662152b630f82 75 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 9.4E-35 T 15-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 NJ56_08655 dc30dd3b75b58deb98106d4083b41729 115 SMART SM00905 4 114 1.9E-46 T 15-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 NJ56_08655 dc30dd3b75b58deb98106d4083b41729 115 Pfam PF02152 Dihydroneopterin aldolase 4 112 1.4E-30 T 15-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 NJ56_08655 dc30dd3b75b58deb98106d4083b41729 115 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 114 1.3E-26 T 15-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 NJ56_08655 dc30dd3b75b58deb98106d4083b41729 115 SUPERFAMILY SSF55620 1 114 1.78E-36 T 15-10-2018 NJ56_08655 dc30dd3b75b58deb98106d4083b41729 115 Gene3D G3DSA:3.30.1130.10 1 115 1.7E-42 T 15-10-2018 NJ56_08655 dc30dd3b75b58deb98106d4083b41729 115 TIGRFAM TIGR00526 folB_dom: FolB domain 1 114 1.4E-38 T 15-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 NJ56_05015 b1b1da00eece1394c86f010dc8f4ff00 439 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 142 159 - T 15-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 NJ56_05015 b1b1da00eece1394c86f010dc8f4ff00 439 SUPERFAMILY SSF53850 27 427 2.57E-74 T 15-10-2018 NJ56_05015 b1b1da00eece1394c86f010dc8f4ff00 439 Pfam PF13416 Bacterial extracellular solute-binding protein 46 369 2.1E-39 T 15-10-2018 IPR006059 Bacterial extracellular solute-binding protein NJ56_05015 b1b1da00eece1394c86f010dc8f4ff00 439 Gene3D G3DSA:3.40.190.10 31 385 8.5E-166 T 15-10-2018 NJ56_05015 b1b1da00eece1394c86f010dc8f4ff00 439 Gene3D G3DSA:3.40.190.10 147 426 8.5E-166 T 15-10-2018 NJ56_13075 6e1ce09a6dc7bdd697e308a196a25c3f 391 SUPERFAMILY SSF81324 121 262 1.18E-17 T 15-10-2018 NJ56_13075 6e1ce09a6dc7bdd697e308a196a25c3f 391 Pfam PF02254 TrkA-N domain 243 356 5.7E-16 T 15-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 NJ56_13075 6e1ce09a6dc7bdd697e308a196a25c3f 391 Gene3D G3DSA:3.40.50.720 238 385 3.4E-27 T 15-10-2018 NJ56_13075 6e1ce09a6dc7bdd697e308a196a25c3f 391 SUPERFAMILY SSF51735 240 375 1.34E-20 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_13075 6e1ce09a6dc7bdd697e308a196a25c3f 391 Pfam PF07885 Ion channel 147 218 3.7E-13 T 15-10-2018 IPR013099 Potassium channel domain NJ56_13075 6e1ce09a6dc7bdd697e308a196a25c3f 391 Gene3D G3DSA:1.10.287.70 137 221 2.1E-14 T 15-10-2018 NJ56_10825 531355a9ab3fb11b2b98e9089561d754 181 Pfam PF13302 Acetyltransferase (GNAT) domain 7 141 9.2E-21 T 15-10-2018 IPR000182 GNAT domain NJ56_10825 531355a9ab3fb11b2b98e9089561d754 181 Gene3D G3DSA:3.40.630.30 5 174 2.6E-48 T 15-10-2018 NJ56_10825 531355a9ab3fb11b2b98e9089561d754 181 SUPERFAMILY SSF55729 4 164 1.98E-38 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_16270 10a8804b8e031a654bbbf77c0e7871e6 262 Gene3D G3DSA:3.40.50.300 54 262 3.5E-66 T 15-10-2018 NJ56_16270 10a8804b8e031a654bbbf77c0e7871e6 262 Pfam PF02562 PhoH-like protein 57 261 1.2E-77 T 15-10-2018 IPR003714 PhoH-like protein GO:0005524 NJ56_16270 10a8804b8e031a654bbbf77c0e7871e6 262 SUPERFAMILY SSF52540 57 239 6.35E-32 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03665 0a1307a581e8c9fde45fea41a02d7a2f 263 PIRSF PIRSF037116 2 263 2.3E-141 T 15-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK NJ56_03665 0a1307a581e8c9fde45fea41a02d7a2f 263 Gene3D G3DSA:3.40.50.300 9 263 1.7E-66 T 15-10-2018 NJ56_03665 0a1307a581e8c9fde45fea41a02d7a2f 263 SUPERFAMILY SSF52540 7 259 1.01E-56 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03665 0a1307a581e8c9fde45fea41a02d7a2f 263 SMART SM00382 36 234 4.3E-15 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_03665 0a1307a581e8c9fde45fea41a02d7a2f 263 Pfam PF00005 ABC transporter 28 184 5.0E-30 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_03665 0a1307a581e8c9fde45fea41a02d7a2f 263 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_03665 0a1307a581e8c9fde45fea41a02d7a2f 263 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 10 261 8.9E-119 T 15-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK NJ56_17020 86753671c68f114fa6ef46553e18663a 758 Gene3D G3DSA:3.40.50.300 438 651 3.3E-79 T 15-10-2018 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 Gene3D G3DSA:3.40.50.300 158 349 4.1E-63 T 15-10-2018 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 Gene3D G3DSA:1.10.8.60 351 437 1.2E-35 T 15-10-2018 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 SMART SM00382 205 351 1.5E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17020 86753671c68f114fa6ef46553e18663a 758 SMART SM00382 486 653 2.2E-7 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17020 86753671c68f114fa6ef46553e18663a 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 1.1E-14 T 15-10-2018 IPR004176 Clp, N-terminal NJ56_17020 86753671c68f114fa6ef46553e18663a 758 SMART SM01086 652 741 6.4E-33 T 15-10-2018 IPR019489 Clp ATPase, C-terminal NJ56_17020 86753671c68f114fa6ef46553e18663a 758 Gene3D G3DSA:1.10.1780.10 1 143 1.0E-44 T 15-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 732 0.0 T 15-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 517 535 - T 15-10-2018 IPR028299 ClpA/B, conserved site 2 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 490 508 1.2E-36 T 15-10-2018 IPR001270 ClpA/B family GO:0005524 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 594 608 1.2E-36 T 15-10-2018 IPR001270 ClpA/B family GO:0005524 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 561 579 1.2E-36 T 15-10-2018 IPR001270 ClpA/B family GO:0005524 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 532 550 1.2E-36 T 15-10-2018 IPR001270 ClpA/B family GO:0005524 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 SUPERFAMILY SSF81923 1 141 3.66E-58 T 15-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 342 5.8E-13 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 Gene3D G3DSA:1.10.8.60 652 757 2.5E-35 T 15-10-2018 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 SUPERFAMILY SSF52540 168 426 2.43E-68 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17020 86753671c68f114fa6ef46553e18663a 758 SUPERFAMILY SSF52540 436 747 3.86E-79 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17020 86753671c68f114fa6ef46553e18663a 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 652 732 2.3E-24 T 15-10-2018 IPR019489 Clp ATPase, C-terminal NJ56_17020 86753671c68f114fa6ef46553e18663a 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 301 313 - T 15-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 NJ56_17020 86753671c68f114fa6ef46553e18663a 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 485 646 3.2E-49 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_13375 9d544f546bcb3384ecf8adbe5622905c 345 Pfam PF04860 Phage portal protein 100 325 4.9E-15 T 15-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein NJ56_13375 9d544f546bcb3384ecf8adbe5622905c 345 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 54 332 4.6E-85 T 15-10-2018 IPR006430 Phage portal protein PBSX family NJ56_13375 9d544f546bcb3384ecf8adbe5622905c 345 PIRSF PIRSF018494 1 345 5.9E-152 T 15-10-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria NJ56_07995 7d441a78dd27a8a2fbc8290ce8d4a273 638 SMART SM00052 392 632 4.4E-24 T 15-10-2018 IPR001633 EAL domain NJ56_07995 7d441a78dd27a8a2fbc8290ce8d4a273 638 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 33 130 1.3E-29 T 15-10-2018 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 NJ56_07995 7d441a78dd27a8a2fbc8290ce8d4a273 638 SMART SM00267 213 382 4.5E-13 T 15-10-2018 IPR000160 GGDEF domain NJ56_07995 7d441a78dd27a8a2fbc8290ce8d4a273 638 Pfam PF00990 Diguanylate cyclase, GGDEF domain 224 377 4.9E-18 T 15-10-2018 IPR000160 GGDEF domain NJ56_07995 7d441a78dd27a8a2fbc8290ce8d4a273 638 Gene3D G3DSA:3.20.20.450 392 628 3.8E-32 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_07995 7d441a78dd27a8a2fbc8290ce8d4a273 638 Pfam PF00563 EAL domain 400 627 1.5E-37 T 15-10-2018 IPR001633 EAL domain NJ56_07995 7d441a78dd27a8a2fbc8290ce8d4a273 638 SUPERFAMILY SSF55073 230 384 1.18E-15 T 15-10-2018 IPR029787 Nucleotide cyclase NJ56_07995 7d441a78dd27a8a2fbc8290ce8d4a273 638 SUPERFAMILY SSF141868 399 630 1.22E-34 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_07995 7d441a78dd27a8a2fbc8290ce8d4a273 638 Gene3D G3DSA:3.30.70.270 207 383 1.8E-17 T 15-10-2018 NJ56_01810 9012697be98107f731cb2688d76ac10b 260 SUPERFAMILY SSF56219 41 260 2.49E-27 T 15-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily NJ56_01810 9012697be98107f731cb2688d76ac10b 260 Gene3D G3DSA:3.60.10.10 41 260 2.3E-21 T 15-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily NJ56_01810 9012697be98107f731cb2688d76ac10b 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 173 251 9.6E-7 T 15-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase NJ56_07890 35aa0d9d8ca6f783633ddd3301f70cad 183 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 40.47 T 15-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 NJ56_07890 35aa0d9d8ca6f783633ddd3301f70cad 183 SUPERFAMILY SSF50249 4 183 2.95E-63 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_07890 35aa0d9d8ca6f783633ddd3301f70cad 183 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 183 2.4E-62 T 15-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 NJ56_07890 35aa0d9d8ca6f783633ddd3301f70cad 183 PIRSF PIRSF002070 2 172 1.6E-40 T 15-10-2018 NJ56_07890 35aa0d9d8ca6f783633ddd3301f70cad 183 Gene3D G3DSA:2.40.50.140 2 149 3.2E-53 T 15-10-2018 NJ56_07890 35aa0d9d8ca6f783633ddd3301f70cad 183 Pfam PF00436 Single-strand binding protein family 6 112 7.5E-44 T 15-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 NJ56_04590 0969a8c26c2ba1db226e6393acf29d3c 264 TIGRFAM TIGR03761 ICE_PFL4669: integrating conjugative element protein, PFL_4669 family 14 226 1.6E-72 T 15-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 NJ56_04590 0969a8c26c2ba1db226e6393acf29d3c 264 Pfam PF08900 Domain of unknown function (DUF1845) 12 223 2.0E-74 T 15-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 NJ56_07210 35549daef437abe9c3731885b25b14b0 136 SUPERFAMILY SSF82784 1 131 1.22E-42 T 15-10-2018 IPR036102 OsmC/Ohr superfamily NJ56_07210 35549daef437abe9c3731885b25b14b0 136 Gene3D G3DSA:2.20.25.10 1 34 1.7E-21 T 15-10-2018 NJ56_07210 35549daef437abe9c3731885b25b14b0 136 Gene3D G3DSA:3.30.300.20 35 133 9.6E-32 T 15-10-2018 IPR015946 K homology domain-like, alpha/beta NJ56_07210 35549daef437abe9c3731885b25b14b0 136 Pfam PF02566 OsmC-like protein 30 127 5.4E-19 T 15-10-2018 IPR003718 OsmC/Ohr family NJ56_09430 273041a935693b94acee613caec0b025 222 SUPERFAMILY SSF46894 4 96 2.66E-17 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_09430 273041a935693b94acee613caec0b025 222 SMART SM00862 22 95 7.2E-15 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_09430 273041a935693b94acee613caec0b025 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 95 1.3E-17 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_09430 273041a935693b94acee613caec0b025 222 Gene3D G3DSA:1.10.10.10 1 114 1.2E-21 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 469 479 3.8E-24 T 15-10-2018 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 311 325 3.8E-24 T 15-10-2018 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 522 541 3.8E-24 T 15-10-2018 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 545 557 3.8E-24 T 15-10-2018 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 154 168 3.8E-24 T 15-10-2018 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 3 683 0.0 T 15-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 SUPERFAMILY SSF81665 42 305 2.48E-10 T 15-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 379 610 3.0E-48 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 72 347 3.2E-34 T 15-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 8 686 41.181 T 15-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 SUPERFAMILY SSF81653 115 207 8.5E-21 T 15-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 SUPERFAMILY SSF56784 299 565 1.19E-37 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 Gene3D G3DSA:2.70.150.20 107 212 7.6E-26 T 15-10-2018 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 Pfam PF00122 E1-E2 ATPase 115 288 5.1E-32 T 15-10-2018 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 Pfam PF00702 haloacid dehalogenase-like hydrolase 307 536 7.8E-35 T 15-10-2018 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 Gene3D G3DSA:3.40.1110.10 322 457 5.4E-56 T 15-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 NJ56_00445 5d8eed7118b77b0378952cf32438a003 688 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 313 319 - T 15-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 4.5E-174 T 15-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 SUPERFAMILY SSF52540 3 301 4.09E-84 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 Pfam PF01926 50S ribosome-binding GTPase 5 122 1.8E-21 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.9E-34 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.9E-34 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.9E-34 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.9E-34 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 PIRSF PIRSF006641 1 363 1.2E-157 T 15-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 Gene3D G3DSA:3.40.50.300 4 278 5.4E-154 T 15-10-2018 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 Gene3D G3DSA:3.10.20.30 48 362 5.4E-154 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 1.7E-39 T 15-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 Gene3D G3DSA:1.10.150.300 120 200 5.4E-154 T 15-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 46.745 T 15-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 NJ56_16065 f2365ad2ef1a4379f159e43f5dc350b8 363 SUPERFAMILY SSF81271 279 359 6.76E-36 T 15-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 NJ56_15615 7c839fee4e12fc22443fe139077d7224 291 SUPERFAMILY SSF74650 8 271 2.01E-70 T 15-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 NJ56_15615 7c839fee4e12fc22443fe139077d7224 291 PIRSF PIRSF016020 9 288 8.9E-55 T 15-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 NJ56_15615 7c839fee4e12fc22443fe139077d7224 291 Pfam PF01263 Aldose 1-epimerase 29 272 1.2E-44 T 15-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 NJ56_15615 7c839fee4e12fc22443fe139077d7224 291 Gene3D G3DSA:2.70.98.10 1 289 2.3E-93 T 15-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 NJ56_00485 65419b4b2bcc9975535201d3b652895a 95 Pfam PF01402 Ribbon-helix-helix protein, copG family 52 89 3.4E-8 T 15-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 NJ56_02145 193211d9f7bb0ea34a0451b5d2e1c056 170 SUPERFAMILY SSF48452 50 144 5.18E-14 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_02145 193211d9f7bb0ea34a0451b5d2e1c056 170 PIRSF PIRSF003165 10 170 2.4E-58 T 15-10-2018 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup NJ56_02145 193211d9f7bb0ea34a0451b5d2e1c056 170 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 58 77 1.7E-13 T 15-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD NJ56_02145 193211d9f7bb0ea34a0451b5d2e1c056 170 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 33 56 1.7E-13 T 15-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD NJ56_02145 193211d9f7bb0ea34a0451b5d2e1c056 170 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 114 136 1.7E-13 T 15-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD NJ56_02145 193211d9f7bb0ea34a0451b5d2e1c056 170 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 82 104 1.7E-13 T 15-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD NJ56_02145 193211d9f7bb0ea34a0451b5d2e1c056 170 Pfam PF07720 Tetratricopeptide repeat 81 114 1.8E-10 T 15-10-2018 IPR011716 Tetratricopeptide TPR-3 NJ56_02145 193211d9f7bb0ea34a0451b5d2e1c056 170 Pfam PF07720 Tetratricopeptide repeat 50 80 4.7E-10 T 15-10-2018 IPR011716 Tetratricopeptide TPR-3 NJ56_02145 193211d9f7bb0ea34a0451b5d2e1c056 170 Gene3D G3DSA:1.25.40.10 17 166 1.5E-53 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_02145 193211d9f7bb0ea34a0451b5d2e1c056 170 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 32 161 3.7E-38 T 15-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD NJ56_16180 cab4f13ac326a24ee24fa53d1fea7b6f 190 Pfam PF05962 HutD 9 164 4.2E-51 T 15-10-2018 IPR010282 Uncharacterised protein family HutD/Ves NJ56_16180 cab4f13ac326a24ee24fa53d1fea7b6f 190 SUPERFAMILY SSF51182 1 187 1.69E-54 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_16180 cab4f13ac326a24ee24fa53d1fea7b6f 190 Gene3D G3DSA:2.60.120.10 12 114 2.2E-39 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_16180 cab4f13ac326a24ee24fa53d1fea7b6f 190 Gene3D G3DSA:2.60.120.10 9 149 2.2E-39 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_00215 55d5e6938171b5cfa75704e88a4b72ba 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 2.1E-178 T 15-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 NJ56_00215 55d5e6938171b5cfa75704e88a4b72ba 350 PIRSF PIRSF001361 1 350 1.8E-165 T 15-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 NJ56_00215 55d5e6938171b5cfa75704e88a4b72ba 350 Gene3D G3DSA:3.20.20.70 1 350 1.8E-170 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_00215 55d5e6938171b5cfa75704e88a4b72ba 350 SUPERFAMILY SSF51569 7 348 5.44E-138 T 15-10-2018 NJ56_00215 55d5e6938171b5cfa75704e88a4b72ba 350 Pfam PF00793 DAHP synthetase I family 40 338 4.9E-110 T 15-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 NJ56_08490 537a9401b7f7833e2e1fd54b256a0d55 349 Gene3D G3DSA:1.10.150.130 28 142 5.4E-16 T 15-10-2018 IPR010998 Integrase/recombinase, N-terminal NJ56_08490 537a9401b7f7833e2e1fd54b256a0d55 349 SUPERFAMILY SSF56349 31 321 5.59E-49 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_08490 537a9401b7f7833e2e1fd54b256a0d55 349 Pfam PF00589 Phage integrase family 147 317 3.6E-33 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_08490 537a9401b7f7833e2e1fd54b256a0d55 349 Gene3D G3DSA:1.10.443.10 145 326 3.1E-47 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_08535 537a9401b7f7833e2e1fd54b256a0d55 349 Gene3D G3DSA:1.10.150.130 28 142 5.4E-16 T 15-10-2018 IPR010998 Integrase/recombinase, N-terminal NJ56_08535 537a9401b7f7833e2e1fd54b256a0d55 349 SUPERFAMILY SSF56349 31 321 5.59E-49 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_08535 537a9401b7f7833e2e1fd54b256a0d55 349 Pfam PF00589 Phage integrase family 147 317 3.6E-33 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_08535 537a9401b7f7833e2e1fd54b256a0d55 349 Gene3D G3DSA:1.10.443.10 145 326 3.1E-47 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_07525 f76f53812611dc57455dd4a7ae7c469e 315 Gene3D G3DSA:3.40.50.170 1 209 6.3E-88 T 15-10-2018 NJ56_07525 f76f53812611dc57455dd4a7ae7c469e 315 Gene3D G3DSA:3.10.25.10 210 315 2.6E-39 T 15-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_07525 f76f53812611dc57455dd4a7ae7c469e 315 Pfam PF00551 Formyl transferase 7 183 8.9E-53 T 15-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_07525 f76f53812611dc57455dd4a7ae7c469e 315 SUPERFAMILY SSF50486 208 310 3.92E-36 T 15-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 NJ56_07525 f76f53812611dc57455dd4a7ae7c469e 315 SUPERFAMILY SSF53328 5 207 2.62E-66 T 15-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_07525 f76f53812611dc57455dd4a7ae7c469e 315 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 307 37.126 T 15-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 NJ56_07525 f76f53812611dc57455dd4a7ae7c469e 315 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 312 1.0E-113 T 15-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 NJ56_07525 f76f53812611dc57455dd4a7ae7c469e 315 Pfam PF02911 Formyl transferase, C-terminal domain 207 304 9.4E-32 T 15-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_07525 f76f53812611dc57455dd4a7ae7c469e 315 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 15-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NJ56_05755 198656465c9c283c22a68c89ce27b812 248 Gene3D G3DSA:3.40.50.80 97 248 2.9E-40 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_05755 198656465c9c283c22a68c89ce27b812 248 SUPERFAMILY SSF63380 3 99 2.15E-24 T 15-10-2018 IPR017938 Riboflavin synthase-like beta-barrel NJ56_05755 198656465c9c283c22a68c89ce27b812 248 SUPERFAMILY SSF52343 103 248 3.8E-38 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_05755 198656465c9c283c22a68c89ce27b812 248 Pfam PF00970 Oxidoreductase FAD-binding domain 18 90 7.4E-9 T 15-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 NJ56_05755 198656465c9c283c22a68c89ce27b812 248 Pfam PF00175 Oxidoreductase NAD-binding domain 111 222 2.5E-18 T 15-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 NJ56_05755 198656465c9c283c22a68c89ce27b812 248 Gene3D G3DSA:2.40.30.10 1 96 1.4E-29 T 15-10-2018 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 SUPERFAMILY SSF46557 4 79 4.97E-26 T 15-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 Gene3D G3DSA:1.10.287.180 2 77 7.3E-29 T 15-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 PIRSF PIRSF006092 1 158 2.2E-59 T 15-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 4 157 1.9E-71 T 15-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 15-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 18 49 - T 15-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 SUPERFAMILY SSF54534 81 156 2.35E-24 T 15-10-2018 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 Hamap MF_00930 Transcription elongation factor GreB [greB]. 2 157 53.164 T 15-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 Pfam PF03449 Transcription elongation factor, N-terminal 5 75 1.0E-23 T 15-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 Gene3D G3DSA:3.10.50.30 79 158 3.5E-33 T 15-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 Hamap MF_00105 Transcription elongation factor GreA [greA]. 3 155 29.301 T 15-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 NJ56_07025 f2edb90aa813dea4265de63e0a308b9d 163 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 156 2.2E-29 T 15-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 NJ56_09310 e2f61cd425dcae781bdff9932e2f6317 140 Pfam PF07254 Membrane-bound toxin component of toxin-antitoxin system 2 129 9.2E-55 T 15-10-2018 IPR009883 Inner membrane protein YgfX NJ56_09310 e2f61cd425dcae781bdff9932e2f6317 140 ProDom PD083358 MEMBRANE YGFX INNER SIMILAR ECS3768 Y3281 ESCHERICHIA TRANSMEMBRANE YPO0896A STY3202 33 129 6.0E-28 T 15-10-2018 IPR009883 Inner membrane protein YgfX NJ56_09310 e2f61cd425dcae781bdff9932e2f6317 140 PIRSF PIRSF020653 1 138 1.2E-63 T 15-10-2018 IPR009883 Inner membrane protein YgfX NJ56_09205 c765b12c7b19e86b870bfc8319757051 359 PIRSF PIRSF001359 13 359 9.4E-103 T 15-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 NJ56_09205 c765b12c7b19e86b870bfc8319757051 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 101 112 - T 15-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 NJ56_09205 c765b12c7b19e86b870bfc8319757051 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 172 183 - T 15-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 NJ56_09205 c765b12c7b19e86b870bfc8319757051 359 SUPERFAMILY SSF51569 4 357 5.71E-132 T 15-10-2018 NJ56_09205 c765b12c7b19e86b870bfc8319757051 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 355 2.9E-89 T 15-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 NJ56_09205 c765b12c7b19e86b870bfc8319757051 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 357 1.6E-114 T 15-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 NJ56_09205 c765b12c7b19e86b870bfc8319757051 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 358 1.1E-189 T 15-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 NJ56_09205 c765b12c7b19e86b870bfc8319757051 359 Gene3D G3DSA:3.20.20.70 2 359 1.0E-153 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_14605 19a6a8ee7c6ef28a3cbbfef9b3432340 370 Gene3D G3DSA:3.30.420.40 145 327 3.4E-132 T 15-10-2018 NJ56_14605 19a6a8ee7c6ef28a3cbbfef9b3432340 370 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 5 366 1.4E-166 T 15-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 NJ56_14605 19a6a8ee7c6ef28a3cbbfef9b3432340 370 SUPERFAMILY SSF53067 5 340 2.98E-28 T 15-10-2018 NJ56_14605 19a6a8ee7c6ef28a3cbbfef9b3432340 370 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 4 367 41.647 T 15-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 NJ56_14605 19a6a8ee7c6ef28a3cbbfef9b3432340 370 Gene3D G3DSA:3.30.420.40 11 362 3.4E-132 T 15-10-2018 NJ56_08705 9a00f8b01230ea0f1b95497a027f3f34 260 SUPERFAMILY SSF53213 5 259 8.24E-89 T 15-10-2018 NJ56_08705 9a00f8b01230ea0f1b95497a027f3f34 260 PIRSF PIRSF006157 1 260 2.1E-90 T 15-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 NJ56_08705 9a00f8b01230ea0f1b95497a027f3f34 260 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 9 258 2.6E-29 T 15-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 NJ56_08705 9a00f8b01230ea0f1b95497a027f3f34 260 Gene3D G3DSA:3.40.830.10 1 260 4.9E-91 T 15-10-2018 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 295 9.3E-22 T 15-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 PIRSF PIRSF001438 1 311 4.2E-121 T 15-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 SUPERFAMILY SSF54782 220 309 7.72E-28 T 15-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 Gene3D G3DSA:3.30.160.40 221 306 1.4E-29 T 15-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 Gene3D G3DSA:3.40.190.10 100 199 4.8E-83 T 15-10-2018 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 SUPERFAMILY SSF53850 5 219 1.3E-83 T 15-10-2018 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 1.4E-111 T 15-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 2.2E-49 T 15-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 2.2E-49 T 15-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 2.2E-49 T 15-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 2.2E-49 T 15-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 2.2E-49 T 15-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 Gene3D G3DSA:3.40.190.10 6 215 4.8E-83 T 15-10-2018 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 15-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 211 8.5E-78 T 15-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05290 1cd1a62a717d69d477eda556454b0935 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 38.772 T 15-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_15195 dd1dbfba3a11ed6169119c66ceebdb16 108 Pfam PF01253 Translation initiation factor SUI1 32 101 5.2E-18 T 15-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 NJ56_15195 dd1dbfba3a11ed6169119c66ceebdb16 108 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 8 108 1.4E-38 T 15-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 NJ56_15195 dd1dbfba3a11ed6169119c66ceebdb16 108 Gene3D G3DSA:3.30.780.10 28 108 2.1E-33 T 15-10-2018 NJ56_15195 dd1dbfba3a11ed6169119c66ceebdb16 108 SUPERFAMILY SSF55159 5 104 4.71E-24 T 15-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 NJ56_15195 dd1dbfba3a11ed6169119c66ceebdb16 108 PIRSF PIRSF037511 1 108 4.4E-35 T 15-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 Gene3D G3DSA:3.50.50.60 7 388 2.9E-128 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 392 1.9E-129 T 15-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 3.2E-5 T 15-10-2018 NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 347 369 3.2E-5 T 15-10-2018 NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 Gene3D G3DSA:2.40.30.10 188 339 2.9E-128 T 15-10-2018 NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 SUPERFAMILY SSF160996 190 338 7.32E-44 T 15-10-2018 NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 SUPERFAMILY SSF51905 3 395 1.27E-56 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 Pfam PF03486 HI0933-like protein 4 392 1.2E-155 T 15-10-2018 NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 1.3E-8 T 15-10-2018 NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 362 369 1.3E-8 T 15-10-2018 NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.3E-8 T 15-10-2018 NJ56_06840 12a01d5c5fd8e40016094c6f592582d3 400 Gene3D G3DSA:1.10.8.260 262 322 2.9E-128 T 15-10-2018 IPR023166 HI0933-like insert domain superfamily NJ56_11375 0e183292037718403b06d3ffd51adda9 254 PRINTS PR01805 VacJ lipoprotein signature 32 45 6.1E-31 T 15-10-2018 IPR007428 MlaA lipoprotein GO:0016020 NJ56_11375 0e183292037718403b06d3ffd51adda9 254 PRINTS PR01805 VacJ lipoprotein signature 50 66 6.1E-31 T 15-10-2018 IPR007428 MlaA lipoprotein GO:0016020 NJ56_11375 0e183292037718403b06d3ffd51adda9 254 PRINTS PR01805 VacJ lipoprotein signature 101 118 6.1E-31 T 15-10-2018 IPR007428 MlaA lipoprotein GO:0016020 NJ56_11375 0e183292037718403b06d3ffd51adda9 254 PRINTS PR01805 VacJ lipoprotein signature 140 157 6.1E-31 T 15-10-2018 IPR007428 MlaA lipoprotein GO:0016020 NJ56_11375 0e183292037718403b06d3ffd51adda9 254 Pfam PF04333 MlaA lipoprotein 31 224 6.0E-66 T 15-10-2018 IPR007428 MlaA lipoprotein GO:0016020 NJ56_17885 fa7a12c5bc578ab1bff4b8bc3cbd5672 110 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 12 100 6.3E-25 T 15-10-2018 IPR009241 Toxin HigB-like NJ56_16620 b3b773b84d78671f869a78342867abb6 353 Pfam PF00581 Rhodanese-like domain 138 233 1.2E-14 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_16620 b3b773b84d78671f869a78342867abb6 353 SMART SM00450 136 237 2.1E-26 T 15-10-2018 IPR001763 Rhodanese-like domain NJ56_16620 b3b773b84d78671f869a78342867abb6 353 Gene3D G3DSA:3.40.250.10 124 270 1.3E-43 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_16620 b3b773b84d78671f869a78342867abb6 353 Pfam PF12368 Rhodanase C-terminal 246 308 9.9E-19 T 15-10-2018 IPR022111 Rhodanase, C-terminal NJ56_16620 b3b773b84d78671f869a78342867abb6 353 SUPERFAMILY SSF52821 117 256 1.57E-31 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_16620 b3b773b84d78671f869a78342867abb6 353 Gene3D G3DSA:3.30.70.100 13 118 4.1E-14 T 15-10-2018 NJ56_16620 b3b773b84d78671f869a78342867abb6 353 Hamap MF_00469 UPF0176 protein YceA [yceA]. 22 277 38.386 T 15-10-2018 IPR020936 Uncharacterised protein family UPF0176 NJ56_01250 ca5ed2693fcc5f9fd7d16eaf243685b8 216 SUPERFAMILY SSF48498 85 202 1.71E-15 T 15-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NJ56_01250 ca5ed2693fcc5f9fd7d16eaf243685b8 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.2E-19 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_01250 ca5ed2693fcc5f9fd7d16eaf243685b8 216 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 15-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site NJ56_01250 ca5ed2693fcc5f9fd7d16eaf243685b8 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.3E-11 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_01250 ca5ed2693fcc5f9fd7d16eaf243685b8 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.3E-11 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_01250 ca5ed2693fcc5f9fd7d16eaf243685b8 216 Gene3D G3DSA:1.10.357.10 1 214 8.6E-82 T 15-10-2018 NJ56_01250 ca5ed2693fcc5f9fd7d16eaf243685b8 216 SUPERFAMILY SSF46689 1 65 1.45E-19 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_01250 ca5ed2693fcc5f9fd7d16eaf243685b8 216 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 202 3.2E-52 T 15-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 NJ56_06710 57d21bbf82a52521d4f2b6fdfaba70ff 518 TIGRFAM TIGR03369 cellulose_bcsE: cellulose biosynthesis protein BcsE 154 472 4.5E-111 T 15-10-2018 IPR017745 BcsE, GIL domain GO:0035438 NJ56_06710 57d21bbf82a52521d4f2b6fdfaba70ff 518 Pfam PF10995 GGDEF I-site like or GIL domain 160 472 4.0E-127 T 15-10-2018 IPR017745 BcsE, GIL domain GO:0035438 NJ56_12110 8609709d01a6c230ee8860065f6540dd 499 PIRSF PIRSF007349 1 492 2.3E-192 T 15-10-2018 IPR007067 Tail sheath protein NJ56_12110 8609709d01a6c230ee8860065f6540dd 499 Pfam PF17482 Phage tail sheath C-terminal domain 378 490 1.7E-22 T 15-10-2018 IPR020287 Tail sheath protein, C-terminal domain NJ56_12110 8609709d01a6c230ee8860065f6540dd 499 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 206 369 7.8E-21 T 15-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain NJ56_04120 4a5cc6ec502872ead64c409533a87e3a 156 SUPERFAMILY SSF52540 29 139 2.49E-22 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04120 4a5cc6ec502872ead64c409533a87e3a 156 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 140 6.4E-53 T 15-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 NJ56_04120 4a5cc6ec502872ead64c409533a87e3a 156 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 132 1.8E-41 T 15-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 NJ56_04120 4a5cc6ec502872ead64c409533a87e3a 156 Gene3D G3DSA:3.40.50.300 1 153 5.3E-47 T 15-10-2018 NJ56_11140 e19add76e22317870915ee3f90fa9016 169 SUPERFAMILY SSF51261 12 167 2.44E-56 T 15-10-2018 IPR011055 Duplicated hybrid motif NJ56_11140 e19add76e22317870915ee3f90fa9016 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 1.5E-49 T 15-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 NJ56_11140 e19add76e22317870915ee3f90fa9016 169 Gene3D G3DSA:2.70.70.10 9 169 5.5E-64 T 15-10-2018 IPR011055 Duplicated hybrid motif NJ56_11140 e19add76e22317870915ee3f90fa9016 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 15-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 NJ56_11140 e19add76e22317870915ee3f90fa9016 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 1.4E-50 T 15-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 NJ56_14205 783caab9d18487b4ba47207b938608ba 218 SUPERFAMILY SSF53955 51 215 8.19E-30 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_14205 783caab9d18487b4ba47207b938608ba 218 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 73 101 - T 15-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 NJ56_14205 783caab9d18487b4ba47207b938608ba 218 Pfam PF01464 Transglycosylase SLT domain 55 178 1.2E-27 T 15-10-2018 IPR008258 Transglycosylase SLT domain 1 NJ56_14205 783caab9d18487b4ba47207b938608ba 218 Gene3D G3DSA:1.10.530.10 40 216 3.2E-44 T 15-10-2018 NJ56_14405 47a19edbf1f673cc131d7befd676dbea 65 Pfam PF10636 Hemin uptake protein hemP 29 65 1.1E-17 T 15-10-2018 IPR019600 Hemin uptake protein HemP NJ56_14405 47a19edbf1f673cc131d7befd676dbea 65 Gene3D G3DSA:2.10.70.10 25 65 6.9E-20 T 15-10-2018 NJ56_06660 4c4aa8fac7bbd71c732da824ee22452e 509 Gene3D G3DSA:3.30.565.10 387 501 2.3E-27 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_06660 4c4aa8fac7bbd71c732da824ee22452e 509 Pfam PF05231 MASE1 8 282 7.2E-15 T 15-10-2018 IPR007895 MASE1 NJ56_06660 4c4aa8fac7bbd71c732da824ee22452e 509 Pfam PF07730 Histidine kinase 310 374 6.2E-10 T 15-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 NJ56_06660 4c4aa8fac7bbd71c732da824ee22452e 509 SUPERFAMILY SSF55874 386 500 3.41E-16 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_06660 4c4aa8fac7bbd71c732da824ee22452e 509 SMART SM00387 413 503 1.7E-8 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_06660 4c4aa8fac7bbd71c732da824ee22452e 509 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 416 500 1.6E-6 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_03285 7af0819349752dbea0ef0bfe3a07a6cb 493 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 67 405 7.6E-84 T 15-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 NJ56_03285 7af0819349752dbea0ef0bfe3a07a6cb 493 PIRSF PIRSF014753 46 447 1.6E-88 T 15-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 NJ56_03285 7af0819349752dbea0ef0bfe3a07a6cb 493 PIRSF PIRSF014753 428 493 230.0 T 15-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 NJ56_10375 91424af52d60215a8624811153365325 243 SUPERFAMILY SSF63892 4 242 2.88E-100 T 15-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 NJ56_10375 91424af52d60215a8624811153365325 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 2.2E-103 T 15-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 NJ56_10375 91424af52d60215a8624811153365325 243 Gene3D G3DSA:3.20.20.70 1 243 6.6E-109 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_10375 91424af52d60215a8624811153365325 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 131.997 T 15-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 NJ56_10375 91424af52d60215a8624811153365325 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 239 1.2E-103 T 15-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 NJ56_08265 5caea5ac408e16c8d874b3edc372be5f 213 SUPERFAMILY SSF52833 11 110 7.75E-23 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_08265 5caea5ac408e16c8d874b3edc372be5f 213 SUPERFAMILY SSF47616 82 208 2.13E-28 T 15-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NJ56_08265 5caea5ac408e16c8d874b3edc372be5f 213 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 81 1.6E-18 T 15-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 NJ56_08265 5caea5ac408e16c8d874b3edc372be5f 213 Gene3D G3DSA:3.40.30.10 11 202 2.2E-81 T 15-10-2018 NJ56_08265 5caea5ac408e16c8d874b3edc372be5f 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 194 2.2E-12 T 15-10-2018 IPR004046 Glutathione S-transferase, C-terminal NJ56_08265 5caea5ac408e16c8d874b3edc372be5f 213 Gene3D G3DSA:1.20.1050.10 89 193 2.2E-81 T 15-10-2018 NJ56_14165 c444ed64a22b4c75245960e31da85ae2 182 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 162 1.9E-35 T 15-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase NJ56_14165 c444ed64a22b4c75245960e31da85ae2 182 PIRSF PIRSF030780 1 182 9.2E-100 T 15-10-2018 IPR016956 Inner membrane protein YdjM NJ56_16085 e160e493228cd80caf2039589095156b 384 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 371 2.8E-157 T 15-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 NJ56_16085 e160e493228cd80caf2039589095156b 384 PIRSF PIRSF005622 1 372 4.0E-153 T 15-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 NJ56_16085 e160e493228cd80caf2039589095156b 384 Gene3D G3DSA:3.40.50.11750 30 263 1.1E-109 T 15-10-2018 NJ56_16085 e160e493228cd80caf2039589095156b 384 Gene3D G3DSA:1.10.10.2140 318 369 4.5E-23 T 15-10-2018 NJ56_16085 e160e493228cd80caf2039589095156b 384 Pfam PF01924 Hydrogenase formation hypA family 16 367 2.7E-149 T 15-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 NJ56_16085 e160e493228cd80caf2039589095156b 384 Gene3D G3DSA:3.40.50.11740 66 304 1.1E-109 T 15-10-2018 NJ56_03850 38d6f768aebf97c58788a629064254d8 220 Gene3D G3DSA:1.10.10.10 122 219 9.4E-27 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_03850 38d6f768aebf97c58788a629064254d8 220 SUPERFAMILY SSF52172 1 176 1.57E-38 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_03850 38d6f768aebf97c58788a629064254d8 220 Gene3D G3DSA:3.40.50.2300 1 121 1.4E-38 T 15-10-2018 NJ56_03850 38d6f768aebf97c58788a629064254d8 220 SMART SM00448 1 112 8.1E-36 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_03850 38d6f768aebf97c58788a629064254d8 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.6E-19 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_03850 38d6f768aebf97c58788a629064254d8 220 Pfam PF00072 Response regulator receiver domain 4 113 5.2E-24 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_03850 38d6f768aebf97c58788a629064254d8 220 SMART SM00862 145 216 5.2E-21 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 83.15 T 15-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 9.2E-194 T 15-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 SUPERFAMILY SSF51412 2 477 3.92E-123 T 15-10-2018 NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 1.7E-159 T 15-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 Gene3D G3DSA:3.20.20.70 1 486 2.6E-203 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 SUPERFAMILY SSF54631 95 203 8.34E-23 T 15-10-2018 NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 SMART SM01240 7 473 0.0 T 15-10-2018 NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 SMART SM00116 158 206 4.0E-7 T 15-10-2018 IPR000644 CBS domain NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 SMART SM00116 96 144 1.5E-6 T 15-10-2018 IPR000644 CBS domain NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 15-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 Pfam PF00571 CBS domain 149 202 4.4E-4 T 15-10-2018 IPR000644 CBS domain NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 Pfam PF00571 CBS domain 95 140 1.2E-5 T 15-10-2018 IPR000644 CBS domain NJ56_10650 83e7104862b8dfb40adf157f1278bee8 487 PIRSF PIRSF000130 1 487 1.3E-193 T 15-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 NJ56_05185 694d81ca6b0b4d4c20ef1102688dea8b 358 SUPERFAMILY SSF51695 28 351 2.88E-94 T 15-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 NJ56_05185 694d81ca6b0b4d4c20ef1102688dea8b 358 Gene3D G3DSA:3.20.20.190 25 352 1.1E-134 T 15-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 NJ56_05185 694d81ca6b0b4d4c20ef1102688dea8b 358 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 32 346 7.5E-74 T 15-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 NJ56_01265 3249e4e4fd877f70cca6853bfbd6f507 84 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 6.7E-16 T 15-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_01265 3249e4e4fd877f70cca6853bfbd6f507 84 PRINTS PR01249 Ribosomal protein L31 signature 59 77 4.5E-14 T 15-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_01265 3249e4e4fd877f70cca6853bfbd6f507 84 PRINTS PR01249 Ribosomal protein L31 signature 2 19 4.5E-14 T 15-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_01265 3249e4e4fd877f70cca6853bfbd6f507 84 PRINTS PR01249 Ribosomal protein L31 signature 44 59 4.5E-14 T 15-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_01265 3249e4e4fd877f70cca6853bfbd6f507 84 Gene3D G3DSA:2.30.170.50 1 83 8.8E-22 T 15-10-2018 NJ56_01265 3249e4e4fd877f70cca6853bfbd6f507 84 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 25.832 T 15-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_01265 3249e4e4fd877f70cca6853bfbd6f507 84 SUPERFAMILY SSF143800 1 81 7.85E-22 T 15-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01265 3249e4e4fd877f70cca6853bfbd6f507 84 Pfam PF01197 Ribosomal protein L31 1 78 5.6E-24 T 15-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_17290 42dab33fb4112aa8342bd55f2019d89d 528 SUPERFAMILY SSF54631 292 426 2.15E-24 T 15-10-2018 NJ56_17290 42dab33fb4112aa8342bd55f2019d89d 528 Gene3D G3DSA:3.30.465.10 438 520 1.6E-20 T 15-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 NJ56_17290 42dab33fb4112aa8342bd55f2019d89d 528 SMART SM01091 441 520 1.3E-26 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_17290 42dab33fb4112aa8342bd55f2019d89d 528 Gene3D G3DSA:3.10.580.10 285 437 1.1E-39 T 15-10-2018 NJ56_17290 42dab33fb4112aa8342bd55f2019d89d 528 Pfam PF03741 Integral membrane protein TerC family 15 203 1.9E-49 T 15-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 NJ56_17290 42dab33fb4112aa8342bd55f2019d89d 528 Pfam PF00571 CBS domain 375 424 2.8E-6 T 15-10-2018 IPR000644 CBS domain NJ56_17290 42dab33fb4112aa8342bd55f2019d89d 528 Pfam PF00571 CBS domain 304 361 0.0014 T 15-10-2018 IPR000644 CBS domain NJ56_17290 42dab33fb4112aa8342bd55f2019d89d 528 Pfam PF03471 Transporter associated domain 442 518 9.7E-19 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_17290 42dab33fb4112aa8342bd55f2019d89d 528 SUPERFAMILY SSF56176 439 523 6.27E-22 T 15-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 NJ56_11545 d01544fcbcb75555e499d06c6187bdff 505 Pfam PF13522 Glutamine amidotransferase domain 65 210 4.6E-15 T 15-10-2018 NJ56_11545 d01544fcbcb75555e499d06c6187bdff 505 Gene3D G3DSA:3.40.50.2020 279 443 2.4E-161 T 15-10-2018 NJ56_11545 d01544fcbcb75555e499d06c6187bdff 505 Pfam PF00156 Phosphoribosyl transferase domain 286 394 2.5E-8 T 15-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 NJ56_11545 d01544fcbcb75555e499d06c6187bdff 505 PIRSF PIRSF000485 1 483 6.1E-170 T 15-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 NJ56_11545 d01544fcbcb75555e499d06c6187bdff 505 Gene3D G3DSA:3.60.20.10 2 414 2.4E-161 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_11545 d01544fcbcb75555e499d06c6187bdff 505 SUPERFAMILY SSF56235 2 259 1.12E-75 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_11545 d01544fcbcb75555e499d06c6187bdff 505 SUPERFAMILY SSF53271 252 485 1.22E-72 T 15-10-2018 IPR029057 Phosphoribosyltransferase-like NJ56_11545 d01544fcbcb75555e499d06c6187bdff 505 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 9.6E-162 T 15-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 NJ56_11545 d01544fcbcb75555e499d06c6187bdff 505 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 44.955 T 15-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 NJ56_00235 0ab3bc0bf0958ad7120967df0595da59 353 Gene3D G3DSA:3.40.50.10800 115 340 1.2E-93 T 15-10-2018 NJ56_00235 0ab3bc0bf0958ad7120967df0595da59 353 Gene3D G3DSA:3.40.50.10800 200 295 1.2E-93 T 15-10-2018 NJ56_00235 0ab3bc0bf0958ad7120967df0595da59 353 Gene3D G3DSA:3.40.50.10800 31 322 1.2E-93 T 15-10-2018 NJ56_00235 0ab3bc0bf0958ad7120967df0595da59 353 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 347 70.211 T 15-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 NJ56_00235 0ab3bc0bf0958ad7120967df0595da59 353 Pfam PF02445 Quinolinate synthetase A protein 32 340 3.1E-102 T 15-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 NJ56_00235 0ab3bc0bf0958ad7120967df0595da59 353 SUPERFAMILY SSF142754 29 341 1.7E-105 T 15-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 NJ56_00235 0ab3bc0bf0958ad7120967df0595da59 353 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 25 342 8.5E-120 T 15-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 NJ56_04615 db156d6a7ceb092ea23064cd5c427553 450 Pfam PF00772 DnaB-like helicase N terminal domain 10 109 3.5E-34 T 15-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 NJ56_04615 db156d6a7ceb092ea23064cd5c427553 450 SUPERFAMILY SSF48024 8 118 1.44E-35 T 15-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 NJ56_04615 db156d6a7ceb092ea23064cd5c427553 450 Gene3D G3DSA:3.40.50.300 165 445 1.4E-91 T 15-10-2018 NJ56_04615 db156d6a7ceb092ea23064cd5c427553 450 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 10 443 4.2E-142 T 15-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 NJ56_04615 db156d6a7ceb092ea23064cd5c427553 450 Gene3D G3DSA:1.10.860.10 1 164 5.8E-50 T 15-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal NJ56_04615 db156d6a7ceb092ea23064cd5c427553 450 SUPERFAMILY SSF52540 184 435 7.98E-44 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04615 db156d6a7ceb092ea23064cd5c427553 450 Pfam PF03796 DnaB-like helicase C terminal domain 185 442 5.1E-92 T 15-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 NJ56_11585 775aa9ff1e1340625b3764033864b815 234 SUPERFAMILY SSF141868 11 229 8.89E-22 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_11585 775aa9ff1e1340625b3764033864b815 234 SMART SM00052 1 223 1.3E-6 T 15-10-2018 IPR001633 EAL domain NJ56_11585 775aa9ff1e1340625b3764033864b815 234 Pfam PF00563 EAL domain 13 218 1.2E-17 T 15-10-2018 IPR001633 EAL domain NJ56_11585 775aa9ff1e1340625b3764033864b815 234 Gene3D G3DSA:3.20.20.450 1 229 1.0E-41 T 15-10-2018 IPR035919 EAL domain superfamily NJ56_01790 5bd17c8bc236c7cee4f299a3ed7c2c7d 154 Hamap MF_00042 Ribonuclease H [rnhA]. 2 149 37.702 T 15-10-2018 IPR022892 Ribonuclease HI GO:0004523 NJ56_01790 5bd17c8bc236c7cee4f299a3ed7c2c7d 154 Pfam PF00075 RNase H 3 141 8.4E-53 T 15-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 NJ56_01790 5bd17c8bc236c7cee4f299a3ed7c2c7d 154 Gene3D G3DSA:3.30.420.10 1 154 2.1E-59 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_01790 5bd17c8bc236c7cee4f299a3ed7c2c7d 154 SUPERFAMILY SSF53098 3 143 1.9E-57 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_18150 9e1f123ebdcee4c506f69e068afd4305 102 PIRSF PIRSF003259 1 102 1.8E-41 T 15-10-2018 IPR016382 Pilus assembly, TraL GO:0009279|GO:0009297 NJ56_18150 9e1f123ebdcee4c506f69e068afd4305 102 TIGRFAM TIGR02762 TraL_TIGR: type IV conjugative transfer system protein TraL 9 101 6.5E-27 T 15-10-2018 IPR009838 Type IV conjugative transfer system, protein TraL GO:0000746|GO:0019867 NJ56_18150 9e1f123ebdcee4c506f69e068afd4305 102 Pfam PF07178 TraL protein 10 101 8.2E-27 T 15-10-2018 IPR009838 Type IV conjugative transfer system, protein TraL GO:0000746|GO:0019867 NJ56_00275 cf8ef61753005bd010a2a257e6afcd86 167 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 65 167 2.0E-46 T 15-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 NJ56_00275 cf8ef61753005bd010a2a257e6afcd86 167 SUPERFAMILY SSF103088 54 166 2.22E-34 T 15-10-2018 IPR036737 OmpA-like domain superfamily NJ56_00275 cf8ef61753005bd010a2a257e6afcd86 167 PRINTS PR01021 OMPA domain signature 67 89 1.3E-17 T 15-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NJ56_00275 cf8ef61753005bd010a2a257e6afcd86 167 PRINTS PR01021 OMPA domain signature 97 112 1.3E-17 T 15-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NJ56_00275 cf8ef61753005bd010a2a257e6afcd86 167 PRINTS PR01021 OMPA domain signature 112 128 1.3E-17 T 15-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NJ56_00275 cf8ef61753005bd010a2a257e6afcd86 167 Pfam PF00691 OmpA family 66 161 2.6E-21 T 15-10-2018 IPR006665 OmpA-like domain NJ56_00275 cf8ef61753005bd010a2a257e6afcd86 167 Gene3D G3DSA:3.30.1330.60 38 167 1.4E-47 T 15-10-2018 IPR036737 OmpA-like domain superfamily NJ56_00275 cf8ef61753005bd010a2a257e6afcd86 167 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 5 167 31.913 T 15-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 NJ56_00275 cf8ef61753005bd010a2a257e6afcd86 167 ProSitePatterns PS01068 OmpA-like domain. 99 143 - T 15-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 NJ56_08040 19160464d836574e4d14cf3577a214bc 303 SUPERFAMILY SSF46785 4 109 9.66E-24 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_08040 19160464d836574e4d14cf3577a214bc 303 SUPERFAMILY SSF53850 90 295 6.52E-42 T 15-10-2018 NJ56_08040 19160464d836574e4d14cf3577a214bc 303 Gene3D G3DSA:1.10.10.10 3 88 4.3E-28 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_08040 19160464d836574e4d14cf3577a214bc 303 Pfam PF03466 LysR substrate binding domain 89 292 4.3E-40 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_08040 19160464d836574e4d14cf3577a214bc 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.5E-20 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_08040 19160464d836574e4d14cf3577a214bc 303 Gene3D G3DSA:3.40.190.290 91 293 6.5E-54 T 15-10-2018 NJ56_17285 ac97f3cc8c762cce110a37efb5404d05 294 SUPERFAMILY SSF53448 2 286 9.01E-61 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_17285 ac97f3cc8c762cce110a37efb5404d05 294 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 269 1.8E-114 T 15-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 NJ56_17285 ac97f3cc8c762cce110a37efb5404d05 294 Gene3D G3DSA:3.90.550.10 1 294 8.0E-86 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_17285 ac97f3cc8c762cce110a37efb5404d05 294 Pfam PF00483 Nucleotidyl transferase 2 269 1.4E-25 T 15-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 NJ56_05265 59057c5cf0e83d7cdc561b9d958b146d 234 Gene3D G3DSA:3.30.450.40 49 232 2.0E-36 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_05265 59057c5cf0e83d7cdc561b9d958b146d 234 Pfam PF04340 Protein of unknown function, DUF484 13 231 2.3E-73 T 15-10-2018 IPR007435 Protein of unknown function DUF484 NJ56_10560 ac8208be2fa7598630e00540a5558498 111 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 15-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 NJ56_10560 ac8208be2fa7598630e00540a5558498 111 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 14 91 1.4E-16 T 15-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NJ56_10560 ac8208be2fa7598630e00540a5558498 111 Gene3D G3DSA:3.10.20.30 1 111 2.9E-36 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_10560 ac8208be2fa7598630e00540a5558498 111 SUPERFAMILY SSF54292 6 109 8.59E-35 T 15-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 NJ56_10560 ac8208be2fa7598630e00540a5558498 111 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 1.2E-60 T 15-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 NJ56_10560 ac8208be2fa7598630e00540a5558498 111 PRINTS PR00355 Adrenodoxin signature 60 74 7.8E-10 T 15-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 NJ56_10560 ac8208be2fa7598630e00540a5558498 111 PRINTS PR00355 Adrenodoxin signature 83 91 7.8E-10 T 15-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 NJ56_10560 ac8208be2fa7598630e00540a5558498 111 PRINTS PR00355 Adrenodoxin signature 42 52 7.8E-10 T 15-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 NJ56_02400 8c07d6c0c69d50fe6f0e76402cef49c6 280 Gene3D G3DSA:1.10.287.1080 146 279 3.6E-47 T 15-10-2018 NJ56_02400 8c07d6c0c69d50fe6f0e76402cef49c6 280 SUPERFAMILY SSF101386 153 253 4.49E-23 T 15-10-2018 NJ56_02400 8c07d6c0c69d50fe6f0e76402cef49c6 280 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 38 111 2.2E-27 T 15-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core NJ56_02400 8c07d6c0c69d50fe6f0e76402cef49c6 280 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 184 246 1.5E-6 T 15-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core NJ56_02400 8c07d6c0c69d50fe6f0e76402cef49c6 280 SUPERFAMILY SSF101386 14 112 6.17E-24 T 15-10-2018 NJ56_02400 8c07d6c0c69d50fe6f0e76402cef49c6 280 Gene3D G3DSA:1.10.287.1080 12 142 1.6E-44 T 15-10-2018 NJ56_02400 8c07d6c0c69d50fe6f0e76402cef49c6 280 TIGRFAM TIGR00444 mazG: MazG family protein 21 274 4.3E-107 T 15-10-2018 IPR011551 NTP pyrophosphohydrolase MazG NJ56_17195 2a7908c13e9f6631d8aa02a4b9baf3a2 455 Pfam PF03315 Serine dehydratase beta chain 3 155 1.9E-54 T 15-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 NJ56_17195 2a7908c13e9f6631d8aa02a4b9baf3a2 455 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 1.2E-219 T 15-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 NJ56_17195 2a7908c13e9f6631d8aa02a4b9baf3a2 455 Gene3D G3DSA:3.30.1330.90 10 159 3.1E-50 T 15-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 NJ56_17195 2a7908c13e9f6631d8aa02a4b9baf3a2 455 Pfam PF03313 Serine dehydratase alpha chain 184 448 1.6E-94 T 15-10-2018 IPR005130 Serine dehydratase-like, alpha subunit NJ56_17195 2a7908c13e9f6631d8aa02a4b9baf3a2 455 SUPERFAMILY SSF143548 16 157 1.46E-44 T 15-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 NJ56_08920 0d7ce23bd80dc7d6dc9de36434c03395 285 SUPERFAMILY SSF52540 15 252 1.01E-59 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_08920 0d7ce23bd80dc7d6dc9de36434c03395 285 SMART SM00382 50 246 2.2E-12 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_08920 0d7ce23bd80dc7d6dc9de36434c03395 285 Gene3D G3DSA:3.40.50.300 25 278 1.1E-65 T 15-10-2018 NJ56_08920 0d7ce23bd80dc7d6dc9de36434c03395 285 Pfam PF00005 ABC transporter 42 189 4.0E-32 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_08920 0d7ce23bd80dc7d6dc9de36434c03395 285 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_15080 dc0e806addd48518fdf8369983d1edfe 405 Gene3D G3DSA:3.30.420.40 92 382 5.1E-89 T 15-10-2018 NJ56_15080 dc0e806addd48518fdf8369983d1edfe 405 SUPERFAMILY SSF53067 87 394 9.98E-42 T 15-10-2018 NJ56_15080 dc0e806addd48518fdf8369983d1edfe 405 Pfam PF00480 ROK family 98 389 4.5E-49 T 15-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 NJ56_15080 dc0e806addd48518fdf8369983d1edfe 405 SUPERFAMILY SSF46785 12 77 2.68E-16 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_15080 dc0e806addd48518fdf8369983d1edfe 405 Gene3D G3DSA:3.30.420.40 209 377 5.1E-89 T 15-10-2018 NJ56_15080 dc0e806addd48518fdf8369983d1edfe 405 Gene3D G3DSA:1.10.10.10 1 82 3.6E-23 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_09965 b664d512d29c1682772357b6718f6f8e 134 SUPERFAMILY SSF52218 1 132 3.04E-21 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_09965 b664d512d29c1682772357b6718f6f8e 134 Hamap MF_00128 Protein NrdI [nrdI]. 3 133 35.487 T 15-10-2018 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial NJ56_09965 b664d512d29c1682772357b6718f6f8e 134 Gene3D G3DSA:3.40.50.360 3 134 3.5E-47 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_09965 b664d512d29c1682772357b6718f6f8e 134 PIRSF PIRSF005087 1 134 1.0E-54 T 15-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI NJ56_09965 b664d512d29c1682772357b6718f6f8e 134 TIGRFAM TIGR00333 nrdI: nrdI protein 5 131 7.0E-54 T 15-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI NJ56_09965 b664d512d29c1682772357b6718f6f8e 134 Pfam PF07972 NrdI Flavodoxin like 5 123 7.5E-48 T 15-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI NJ56_07420 45a2fac6cae4870c4a4e43211f471c5b 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 19.983 T 15-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07420 45a2fac6cae4870c4a4e43211f471c5b 104 Gene3D G3DSA:2.30.30.30 2 104 3.1E-40 T 15-10-2018 IPR014722 Ribosomal protein L2, domain 2 NJ56_07420 45a2fac6cae4870c4a4e43211f471c5b 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 2.0E-39 T 15-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07420 45a2fac6cae4870c4a4e43211f471c5b 104 SMART SM00739 4 31 0.0014 T 15-10-2018 IPR005824 KOW NJ56_07420 45a2fac6cae4870c4a4e43211f471c5b 104 SUPERFAMILY SSF50104 4 100 1.02E-32 T 15-10-2018 IPR008991 Translation protein SH3-like domain superfamily NJ56_07420 45a2fac6cae4870c4a4e43211f471c5b 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 15-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07420 45a2fac6cae4870c4a4e43211f471c5b 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 103 5.0E-23 T 15-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_16655 1316a0ba3d511ced86d8d548dc4df5ea 387 Pfam PF01757 Acyltransferase family 10 357 3.9E-33 T 15-10-2018 IPR002656 Acyltransferase 3 GO:0016747 NJ56_16655 1316a0ba3d511ced86d8d548dc4df5ea 387 Hamap MF_01066 Glucans biosynthesis protein C [mdoC]. 1 376 35.203 T 15-10-2018 IPR023723 Glucan biosynthesis protein C GO:0016741 NJ56_02185 3668dba5d5672c57e0f28883eedeeaf8 431 SMART SM00382 153 334 2.8E-10 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_02185 3668dba5d5672c57e0f28883eedeeaf8 431 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 141 350 5.3E-73 T 15-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_02185 3668dba5d5672c57e0f28883eedeeaf8 431 Gene3D G3DSA:3.40.50.12240 2 431 6.0E-128 T 15-10-2018 NJ56_02185 3668dba5d5672c57e0f28883eedeeaf8 431 SUPERFAMILY SSF52540 83 355 1.04E-86 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02185 3668dba5d5672c57e0f28883eedeeaf8 431 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 8 429 1.7E-127 T 15-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_15720 4115a7da89924f3e4fa078c086a8aa5a 148 PIRSF PIRSF006173 1 145 1.7E-65 T 15-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 NJ56_15720 4115a7da89924f3e4fa078c086a8aa5a 148 Pfam PF03692 Putative zinc- or iron-chelating domain 24 92 4.8E-7 T 15-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein NJ56_15720 4115a7da89924f3e4fa078c086a8aa5a 148 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 2 145 41.197 T 15-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 NJ56_02015 09d3ab41440d2142d88a3025d62fd1d8 435 Pfam PF09362 Domain of unknown function (DUF1996) 6 225 2.5E-35 T 15-10-2018 IPR018535 Domain of unknown function DUF1996 NJ56_06645 a1730fb3419da905ccc1be527dff3b76 487 Pfam PF12146 Serine aminopeptidase, S33 118 237 4.9E-9 T 15-10-2018 IPR022742 Serine aminopeptidase, S33 NJ56_06645 a1730fb3419da905ccc1be527dff3b76 487 SUPERFAMILY SSF53474 78 342 8.67E-25 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_06645 a1730fb3419da905ccc1be527dff3b76 487 Gene3D G3DSA:3.40.50.1820 108 347 4.3E-28 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_01305 6ef81d95761319d6ad83bc6d5faf426a 429 ProSitePatterns PS01219 Ammonium transporters signature. 183 208 - T 15-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 NJ56_01305 6ef81d95761319d6ad83bc6d5faf426a 429 PRINTS PR00342 Rhesus blood group protein signature 127 143 5.0E-6 T 15-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 NJ56_01305 6ef81d95761319d6ad83bc6d5faf426a 429 PRINTS PR00342 Rhesus blood group protein signature 253 275 5.0E-6 T 15-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 NJ56_01305 6ef81d95761319d6ad83bc6d5faf426a 429 PRINTS PR00342 Rhesus blood group protein signature 308 326 5.0E-6 T 15-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 NJ56_01305 6ef81d95761319d6ad83bc6d5faf426a 429 PRINTS PR00342 Rhesus blood group protein signature 222 240 5.0E-6 T 15-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 NJ56_01305 6ef81d95761319d6ad83bc6d5faf426a 429 Gene3D G3DSA:1.10.3430.10 24 408 2.6E-147 T 15-10-2018 IPR029020 Ammonium/urea transporter NJ56_01305 6ef81d95761319d6ad83bc6d5faf426a 429 TIGRFAM TIGR00836 amt: ammonium transporter 32 427 4.9E-139 T 15-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 NJ56_01305 6ef81d95761319d6ad83bc6d5faf426a 429 SUPERFAMILY SSF111352 28 408 4.18E-130 T 15-10-2018 NJ56_01305 6ef81d95761319d6ad83bc6d5faf426a 429 Pfam PF00909 Ammonium Transporter Family 34 427 2.0E-127 T 15-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 NJ56_10935 14cbde07a42a71d77ade8f9e6a47f22f 127 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 11 122 1.7E-37 T 15-10-2018 IPR006504 Transcriptional regulator Spx/MgsR NJ56_10935 14cbde07a42a71d77ade8f9e6a47f22f 127 SUPERFAMILY SSF52833 11 123 4.35E-31 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_10935 14cbde07a42a71d77ade8f9e6a47f22f 127 Gene3D G3DSA:3.40.30.10 9 124 7.3E-41 T 15-10-2018 NJ56_10935 14cbde07a42a71d77ade8f9e6a47f22f 127 Pfam PF03960 ArsC family 13 122 5.5E-15 T 15-10-2018 IPR006660 Arsenate reductase-like NJ56_07945 6e438995af17bd094ac2e6185da60f45 321 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 319 3.1E-136 T 15-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 NJ56_07945 6e438995af17bd094ac2e6185da60f45 321 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 48.657 T 15-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 NJ56_07945 6e438995af17bd094ac2e6185da60f45 321 Pfam PF01207 Dihydrouridine synthase (Dus) 14 318 1.4E-114 T 15-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 NJ56_07945 6e438995af17bd094ac2e6185da60f45 321 SUPERFAMILY SSF51395 11 319 1.01E-87 T 15-10-2018 NJ56_07945 6e438995af17bd094ac2e6185da60f45 321 Gene3D G3DSA:3.20.20.70 7 248 3.7E-75 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_07945 6e438995af17bd094ac2e6185da60f45 321 Gene3D G3DSA:1.10.1200.80 253 321 4.0E-7 T 15-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 NJ56_07945 6e438995af17bd094ac2e6185da60f45 321 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 15-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 NJ56_07945 6e438995af17bd094ac2e6185da60f45 321 PIRSF PIRSF006621 1 321 1.3E-99 T 15-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 NJ56_13130 dd70bbc181ed9fc854b4a26b3179c9c0 329 SUPERFAMILY SSF53686 8 326 2.1E-88 T 15-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NJ56_13130 dd70bbc181ed9fc854b4a26b3179c9c0 329 PIRSF PIRSF006278 1 329 1.5E-98 T 15-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase NJ56_13130 dd70bbc181ed9fc854b4a26b3179c9c0 329 Hamap MF_01045 D-cysteine desulfhydrase [dcyD]. 2 329 64.069 T 15-10-2018 IPR023702 D-cysteine desulphhydrase, bacterial GO:0019148 KEGG: 00270+4.4.1.15 NJ56_13130 dd70bbc181ed9fc854b4a26b3179c9c0 329 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 13 327 1.7E-127 T 15-10-2018 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 NJ56_13130 dd70bbc181ed9fc854b4a26b3179c9c0 329 Gene3D G3DSA:3.40.50.1100 18 323 4.4E-125 T 15-10-2018 NJ56_13130 dd70bbc181ed9fc854b4a26b3179c9c0 329 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 16 317 1.7E-57 T 15-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme NJ56_13130 dd70bbc181ed9fc854b4a26b3179c9c0 329 Gene3D G3DSA:3.40.50.1100 51 159 4.4E-125 T 15-10-2018 NJ56_01230 85500e03785cb16f68422cac41f04d74 178 Pfam PF07445 Primosomal replication protein priC 9 175 6.7E-55 T 15-10-2018 IPR010890 Primosomal replication PriB/PriC NJ56_01230 85500e03785cb16f68422cac41f04d74 178 Gene3D G3DSA:1.20.1270.340 1 98 6.6E-36 T 15-10-2018 IPR038338 PriB/PriC superfamily NJ56_17210 5e979a527546cf15f62687dab41b46b9 381 SUPERFAMILY SSF53383 15 380 1.99E-115 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_17210 5e979a527546cf15f62687dab41b46b9 381 PIRSF PIRSF001434 1 381 1.4E-146 T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_17210 5e979a527546cf15f62687dab41b46b9 381 Gene3D G3DSA:3.40.640.10 2 247 1.3E-91 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_17210 5e979a527546cf15f62687dab41b46b9 381 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 5 379 9.6E-153 T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_17210 5e979a527546cf15f62687dab41b46b9 381 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 188 202 - T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_17210 5e979a527546cf15f62687dab41b46b9 381 Gene3D G3DSA:3.90.1150.10 248 381 2.8E-57 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_08165 aff68556800911c919874bfd939e932d 241 SMART SM00382 28 231 3.0E-10 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_08165 aff68556800911c919874bfd939e932d 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_08165 aff68556800911c919874bfd939e932d 241 Pfam PF00005 ABC transporter 20 166 5.4E-35 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_08165 aff68556800911c919874bfd939e932d 241 SUPERFAMILY SSF52540 4 236 5.33E-66 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_08165 aff68556800911c919874bfd939e932d 241 Gene3D G3DSA:3.40.50.300 2 241 1.3E-71 T 15-10-2018 NJ56_08165 aff68556800911c919874bfd939e932d 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 1.0E-122 T 15-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 NJ56_08165 aff68556800911c919874bfd939e932d 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 236 2.8E-8 T 15-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal NJ56_03735 5cd4e6c4432bda6d19f2c0f30c1ba468 441 PIRSF PIRSF006054 6 439 1.5E-160 T 15-10-2018 IPR021144 Uncharacterised protein family UPF0597 NJ56_03735 5cd4e6c4432bda6d19f2c0f30c1ba468 441 Pfam PF03313 Serine dehydratase alpha chain 91 432 2.9E-46 T 15-10-2018 IPR005130 Serine dehydratase-like, alpha subunit NJ56_03735 5cd4e6c4432bda6d19f2c0f30c1ba468 441 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 9 437 34.055 T 15-10-2018 IPR021144 Uncharacterised protein family UPF0597 NJ56_03020 34e62187e3d85d33da9cbfa4a6da3a78 195 SUPERFAMILY SSF53218 4 189 1.16E-46 T 15-10-2018 IPR036425 MoaB/Mog-like domain superfamily NJ56_03020 34e62187e3d85d33da9cbfa4a6da3a78 195 Pfam PF00994 Probable molybdopterin binding domain 8 146 1.5E-27 T 15-10-2018 IPR001453 MoaB/Mog domain NJ56_03020 34e62187e3d85d33da9cbfa4a6da3a78 195 Gene3D G3DSA:3.40.980.10 1 195 5.9E-64 T 15-10-2018 IPR036425 MoaB/Mog-like domain superfamily NJ56_03020 34e62187e3d85d33da9cbfa4a6da3a78 195 SMART SM00852 7 153 2.9E-21 T 15-10-2018 IPR001453 MoaB/Mog domain NJ56_03020 34e62187e3d85d33da9cbfa4a6da3a78 195 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 15-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 NJ56_03020 34e62187e3d85d33da9cbfa4a6da3a78 195 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 146 4.9E-39 T 15-10-2018 IPR001453 MoaB/Mog domain NJ56_04895 a5cbba5e0d51a6bc8f532ae7559e3e5c 327 Gene3D G3DSA:2.40.180.20 55 309 3.3E-93 T 15-10-2018 NJ56_04895 a5cbba5e0d51a6bc8f532ae7559e3e5c 327 Pfam PF00199 Catalase 48 320 5.3E-32 T 15-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_04895 a5cbba5e0d51a6bc8f532ae7559e3e5c 327 Gene3D G3DSA:1.20.1280.120 34 323 3.3E-93 T 15-10-2018 NJ56_04895 a5cbba5e0d51a6bc8f532ae7559e3e5c 327 PIRSF PIRSF000296 2 327 1.9E-96 T 15-10-2018 IPR024168 Catalase, SrpA-type, predicted NJ56_04895 a5cbba5e0d51a6bc8f532ae7559e3e5c 327 SUPERFAMILY SSF56634 27 326 4.19E-74 T 15-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_04895 a5cbba5e0d51a6bc8f532ae7559e3e5c 327 SMART SM01060 19 327 1.7E-7 T 15-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 NJ56_16115 33204bf322af461e1b0f750d63e9c44f 639 Pfam PF00361 Proton-conducting membrane transporter 135 428 2.7E-45 T 15-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16115 33204bf322af461e1b0f750d63e9c44f 639 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 243 267 8.4E-7 T 15-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16115 33204bf322af461e1b0f750d63e9c44f 639 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 169 193 8.4E-7 T 15-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16115 33204bf322af461e1b0f750d63e9c44f 639 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 394 420 8.4E-7 T 15-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_01445 197dc22a838744850a6af00d8f2898e1 163 Pfam PF04461 Protein of unknown function (DUF520) 2 162 5.9E-65 T 15-10-2018 IPR007551 Protein of unknown function DUF520 NJ56_01445 197dc22a838744850a6af00d8f2898e1 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 163 29.889 T 15-10-2018 IPR007551 Protein of unknown function DUF520 NJ56_01445 197dc22a838744850a6af00d8f2898e1 163 Gene3D G3DSA:3.30.70.860 98 163 2.2E-31 T 15-10-2018 IPR035571 UPF0234-like, C-terminal NJ56_01445 197dc22a838744850a6af00d8f2898e1 163 SUPERFAMILY SSF89963 91 163 5.23E-29 T 15-10-2018 IPR036183 YajQ-like superfamily NJ56_01445 197dc22a838744850a6af00d8f2898e1 163 Gene3D G3DSA:3.30.70.990 9 97 2.4E-32 T 15-10-2018 IPR035570 UPF0234, N-terminal NJ56_01445 197dc22a838744850a6af00d8f2898e1 163 SUPERFAMILY SSF89963 2 88 1.28E-29 T 15-10-2018 IPR036183 YajQ-like superfamily NJ56_13345 32d7003fa596d9d3dd251f59bb976ba1 67 Pfam PF05489 Phage Tail Protein X 1 56 5.3E-28 T 15-10-2018 IPR008861 Phage Tail Protein X-like NJ56_13345 32d7003fa596d9d3dd251f59bb976ba1 67 Gene3D G3DSA:3.10.350.10 1 67 2.0E-31 T 15-10-2018 IPR036779 LysM domain superfamily NJ56_01130 ef7f47652075e84ee494aece122250fe 329 Pfam PF00535 Glycosyl transferase family 2 18 113 1.0E-11 T 15-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 NJ56_01130 ef7f47652075e84ee494aece122250fe 329 Gene3D G3DSA:3.90.550.10 2 278 9.3E-21 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_01130 ef7f47652075e84ee494aece122250fe 329 SUPERFAMILY SSF53448 17 245 6.84E-25 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_13320 c42be591efdcac2f8c3018b8222846fa 154 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 9 145 3.6E-43 T 15-10-2018 IPR006522 Phage virion morphogensis protein NJ56_13320 c42be591efdcac2f8c3018b8222846fa 154 Pfam PF05069 Phage virion morphogenesis family 5 147 3.4E-39 T 15-10-2018 IPR006522 Phage virion morphogensis protein NJ56_16955 9e21923bd81e7b78ff4766a876339b79 760 Pfam PF01228 Glycine radical 630 741 3.5E-43 T 15-10-2018 IPR001150 Glycine radical domain GO:0003824 NJ56_16955 9e21923bd81e7b78ff4766a876339b79 760 PIRSF PIRSF000379 8 760 0.0 T 15-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 NJ56_16955 9e21923bd81e7b78ff4766a876339b79 760 SUPERFAMILY SSF51998 4 758 1.86E-288 T 15-10-2018 NJ56_16955 9e21923bd81e7b78ff4766a876339b79 760 Gene3D G3DSA:3.20.70.20 2 760 0.0 T 15-10-2018 NJ56_16955 9e21923bd81e7b78ff4766a876339b79 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 759 0.0 T 15-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 NJ56_16955 9e21923bd81e7b78ff4766a876339b79 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 15-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site NJ56_16955 9e21923bd81e7b78ff4766a876339b79 760 Pfam PF02901 Pyruvate formate lyase-like 26 614 2.3E-204 T 15-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 NJ56_03240 7fe2f0a1b843634313df2aea5a0d9c15 364 PIRSF PIRSF000112 1 358 1.9E-93 T 15-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 NJ56_03240 7fe2f0a1b843634313df2aea5a0d9c15 364 SUPERFAMILY SSF56796 2 353 2.49E-90 T 15-10-2018 NJ56_03240 7fe2f0a1b843634313df2aea5a0d9c15 364 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 150 178 - T 15-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 NJ56_03240 7fe2f0a1b843634313df2aea5a0d9c15 364 Gene3D G3DSA:1.20.1090.10 160 364 6.1E-79 T 15-10-2018 NJ56_03240 7fe2f0a1b843634313df2aea5a0d9c15 364 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 241 261 - T 15-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 NJ56_03240 7fe2f0a1b843634313df2aea5a0d9c15 364 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 348 1.9E-68 T 15-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 NJ56_03240 7fe2f0a1b843634313df2aea5a0d9c15 364 Gene3D G3DSA:3.40.50.1970 2 159 1.3E-44 T 15-10-2018 NJ56_05810 4af1396774599daa3ab549d9dbb84eb0 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 202 230 - T 15-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 NJ56_05810 4af1396774599daa3ab549d9dbb84eb0 273 Gene3D G3DSA:1.10.3130.10 1 142 1.3E-52 T 15-10-2018 NJ56_05810 4af1396774599daa3ab549d9dbb84eb0 273 Pfam PF06426 Serine acetyltransferase, N-terminal 9 113 7.6E-37 T 15-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 NJ56_05810 4af1396774599daa3ab549d9dbb84eb0 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 226 6.2E-10 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_05810 4af1396774599daa3ab549d9dbb84eb0 273 Gene3D G3DSA:2.160.10.10 143 273 1.9E-38 T 15-10-2018 NJ56_05810 4af1396774599daa3ab549d9dbb84eb0 273 SUPERFAMILY SSF51161 8 260 9.84E-67 T 15-10-2018 IPR011004 Trimeric LpxA-like superfamily NJ56_05810 4af1396774599daa3ab549d9dbb84eb0 273 PIRSF PIRSF000441 75 266 1.1E-58 T 15-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 NJ56_05810 4af1396774599daa3ab549d9dbb84eb0 273 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 83 242 4.0E-73 T 15-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 NJ56_05810 4af1396774599daa3ab549d9dbb84eb0 273 SMART SM00971 9 113 3.4E-60 T 15-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 NJ56_13605 dca74bf81b2228411d77a5dd21605ba1 152 Gene3D G3DSA:1.25.40.750 18 149 2.1E-32 T 15-10-2018 IPR038692 Cthe_2751-like superfamily NJ56_13605 dca74bf81b2228411d77a5dd21605ba1 152 Pfam PF16804 Domain of unknown function (DUF5071) 23 129 2.8E-24 T 15-10-2018 IPR031837 Domain of unknown function DUF5071 NJ56_15295 6ca25179bb3bc7c6265c50f0e9b2e771 303 Pfam PF02811 PHP domain 15 145 5.4E-8 T 15-10-2018 IPR004013 PHP domain GO:0003824 NJ56_15295 6ca25179bb3bc7c6265c50f0e9b2e771 303 SUPERFAMILY SSF89550 13 286 5.1E-50 T 15-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 NJ56_15295 6ca25179bb3bc7c6265c50f0e9b2e771 303 Gene3D G3DSA:3.20.20.140 15 261 2.3E-79 T 15-10-2018 NJ56_15295 6ca25179bb3bc7c6265c50f0e9b2e771 303 Gene3D G3DSA:1.10.150.650 109 180 2.3E-79 T 15-10-2018 NJ56_15295 6ca25179bb3bc7c6265c50f0e9b2e771 303 SMART SM00481 14 81 1.3E-15 T 15-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal NJ56_12330 dcc9717946f0de3edd5ea3e4e917a444 312 SUPERFAMILY SSF53613 7 290 5.14E-67 T 15-10-2018 IPR029056 Ribokinase-like NJ56_12330 dcc9717946f0de3edd5ea3e4e917a444 312 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 15-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 NJ56_12330 dcc9717946f0de3edd5ea3e4e917a444 312 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 5 308 2.4E-100 T 15-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 NJ56_12330 dcc9717946f0de3edd5ea3e4e917a444 312 Gene3D G3DSA:3.40.1190.20 2 310 1.4E-91 T 15-10-2018 IPR029056 Ribokinase-like NJ56_12330 dcc9717946f0de3edd5ea3e4e917a444 312 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 5 308 1.4E-98 T 15-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 NJ56_12330 dcc9717946f0de3edd5ea3e4e917a444 312 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 15-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 NJ56_12330 dcc9717946f0de3edd5ea3e4e917a444 312 PIRSF PIRSF000535 2 311 3.4E-115 T 15-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 NJ56_12330 dcc9717946f0de3edd5ea3e4e917a444 312 Pfam PF00294 pfkB family carbohydrate kinase 14 292 2.3E-64 T 15-10-2018 IPR011611 Carbohydrate kinase PfkB NJ56_05725 7b0c631b636a5f548830eeff1f9e2aeb 79 Pfam PF06005 Cell division protein ZapB 1 78 7.0E-29 T 15-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 NJ56_05725 7b0c631b636a5f548830eeff1f9e2aeb 79 Gene3D G3DSA:1.20.5.340 1 79 1.3E-33 T 15-10-2018 NJ56_05725 7b0c631b636a5f548830eeff1f9e2aeb 79 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 79 18.011 T 15-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 SUPERFAMILY SSF55681 162 502 2.87E-124 T 15-10-2018 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 504 1.8E-229 T 15-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 SUPERFAMILY SSF50249 13 155 3.43E-46 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 Pfam PF01336 OB-fold nucleic acid binding domain 68 146 3.7E-15 T 15-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 PIRSF PIRSF039101 1 505 1.9E-199 T 15-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 Gene3D G3DSA:2.40.50.140 15 154 1.1E-42 T 15-10-2018 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 Gene3D G3DSA:3.30.930.10 155 499 1.3E-135 T 15-10-2018 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 Pfam PF00152 tRNA synthetases class II (D, K and N) 162 501 6.8E-83 T 15-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 505 45.238 T 15-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 1.6E-39 T 15-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 1.6E-39 T 15-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 1.6E-39 T 15-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 1.6E-39 T 15-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 NJ56_09340 843a8497c1bd2b6426f5ddf339b002a3 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 1.6E-39 T 15-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 NJ56_17605 6b26877b8cec2ab2f207af02f9441e2e 720 Gene3D G3DSA:3.40.50.300 275 588 2.8E-7 T 15-10-2018 NJ56_17605 6b26877b8cec2ab2f207af02f9441e2e 720 SUPERFAMILY SSF52540 2 619 8.18E-11 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17605 6b26877b8cec2ab2f207af02f9441e2e 720 Pfam PF13166 AAA domain 16 703 2.9E-116 T 15-10-2018 IPR026866 Protein CR006, P-loop domain NJ56_17605 6b26877b8cec2ab2f207af02f9441e2e 720 Gene3D G3DSA:3.40.50.300 1 168 1.6E-7 T 15-10-2018 NJ56_04475 e0343849c5698d3c650f96242b91d66d 931 SUPERFAMILY SSF52540 458 852 2.6E-33 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04475 e0343849c5698d3c650f96242b91d66d 931 Gene3D G3DSA:3.40.50.300 703 877 1.2E-19 T 15-10-2018 NJ56_04475 e0343849c5698d3c650f96242b91d66d 931 Gene3D G3DSA:3.40.50.300 486 625 5.3E-9 T 15-10-2018 NJ56_04475 e0343849c5698d3c650f96242b91d66d 931 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 51 315 4.9E-80 T 15-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase NJ56_04475 e0343849c5698d3c650f96242b91d66d 931 TIGRFAM TIGR03744 traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family 40 925 0.0 T 15-10-2018 IPR022303 Conjugative transfer ATPase NJ56_08065 34d442c4972658bc7e2816bff4a043c1 165 PIRSF PIRSF001013 1 165 4.6E-63 T 15-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 NJ56_08065 34d442c4972658bc7e2816bff4a043c1 165 Gene3D G3DSA:3.10.450.30 50 165 2.4E-45 T 15-10-2018 NJ56_08065 34d442c4972658bc7e2816bff4a043c1 165 PRINTS PR00117 Barnase signature 102 120 4.8E-28 T 15-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 NJ56_08065 34d442c4972658bc7e2816bff4a043c1 165 PRINTS PR00117 Barnase signature 145 163 4.8E-28 T 15-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 NJ56_08065 34d442c4972658bc7e2816bff4a043c1 165 PRINTS PR00117 Barnase signature 123 142 4.8E-28 T 15-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 NJ56_08065 34d442c4972658bc7e2816bff4a043c1 165 PRINTS PR00117 Barnase signature 82 99 4.8E-28 T 15-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 NJ56_08065 34d442c4972658bc7e2816bff4a043c1 165 PRINTS PR00117 Barnase signature 62 79 4.8E-28 T 15-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 NJ56_08065 34d442c4972658bc7e2816bff4a043c1 165 Pfam PF00545 ribonuclease 75 163 9.9E-26 T 15-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 NJ56_08065 34d442c4972658bc7e2816bff4a043c1 165 SUPERFAMILY SSF53933 59 164 1.79E-38 T 15-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 NJ56_04735 3f48d73572ad2a8f439e44f3a11a2c67 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 2.4E-20 T 15-10-2018 IPR010035 ThiS, thiamine-biosynthesis NJ56_04735 3f48d73572ad2a8f439e44f3a11a2c67 66 Gene3D G3DSA:3.10.20.30 1 66 5.6E-22 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_04735 3f48d73572ad2a8f439e44f3a11a2c67 66 Pfam PF02597 ThiS family 7 66 5.4E-15 T 15-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 NJ56_04735 3f48d73572ad2a8f439e44f3a11a2c67 66 SUPERFAMILY SSF54285 2 66 6.11E-18 T 15-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp NJ56_16410 152a4094e4ef66067e3516c5caa67941 423 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 407 1.2E-157 T 15-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 NJ56_16410 152a4094e4ef66067e3516c5caa67941 423 SUPERFAMILY SSF55031 208 320 1.67E-41 T 15-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain NJ56_16410 152a4094e4ef66067e3516c5caa67941 423 Hamap MF_00550 Peptidase T [pepT]. 1 404 55.381 T 15-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 NJ56_16410 152a4094e4ef66067e3516c5caa67941 423 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 15-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 NJ56_16410 152a4094e4ef66067e3516c5caa67941 423 Pfam PF01546 Peptidase family M20/M25/M40 139 402 4.7E-16 T 15-10-2018 IPR002933 Peptidase M20 GO:0016787 NJ56_16410 152a4094e4ef66067e3516c5caa67941 423 Gene3D G3DSA:3.40.630.10 4 400 1.8E-176 T 15-10-2018 NJ56_16410 152a4094e4ef66067e3516c5caa67941 423 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 138 176 - T 15-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 NJ56_16410 152a4094e4ef66067e3516c5caa67941 423 Pfam PF07687 Peptidase dimerisation domain 205 302 4.3E-10 T 15-10-2018 IPR011650 Peptidase M20, dimerisation domain NJ56_16410 152a4094e4ef66067e3516c5caa67941 423 SUPERFAMILY SSF53187 1 402 4.37E-80 T 15-10-2018 NJ56_16410 152a4094e4ef66067e3516c5caa67941 423 PIRSF PIRSF037215 1 408 6.4E-183 T 15-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 NJ56_16410 152a4094e4ef66067e3516c5caa67941 423 Gene3D G3DSA:3.30.70.360 208 319 1.8E-176 T 15-10-2018 NJ56_16975 e93741635b708a2fda9ec83fb639cd36 447 Gene3D G3DSA:1.10.8.60 165 240 5.7E-27 T 15-10-2018 NJ56_16975 e93741635b708a2fda9ec83fb639cd36 447 SUPERFAMILY SSF52540 6 237 1.69E-41 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16975 e93741635b708a2fda9ec83fb639cd36 447 Gene3D G3DSA:1.20.272.10 241 345 7.6E-44 T 15-10-2018 NJ56_16975 e93741635b708a2fda9ec83fb639cd36 447 Pfam PF16193 AAA C-terminal domain 188 267 3.3E-22 T 15-10-2018 IPR032423 AAA C-terminal domain NJ56_16975 e93741635b708a2fda9ec83fb639cd36 447 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 159 3.8E-15 T 15-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 NJ56_16975 e93741635b708a2fda9ec83fb639cd36 447 SUPERFAMILY SSF48019 252 434 5.67E-71 T 15-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 NJ56_16975 e93741635b708a2fda9ec83fb639cd36 447 Gene3D G3DSA:3.40.50.300 1 164 9.7E-48 T 15-10-2018 NJ56_16975 e93741635b708a2fda9ec83fb639cd36 447 Pfam PF12002 MgsA AAA+ ATPase C terminal 268 434 4.8E-64 T 15-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal NJ56_16975 e93741635b708a2fda9ec83fb639cd36 447 Gene3D G3DSA:1.10.3710.10 346 447 1.5E-37 T 15-10-2018 NJ56_16975 e93741635b708a2fda9ec83fb639cd36 447 SMART SM00382 49 165 4.6E-17 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_14595 5de9a45d293687aed99d261b8179fd72 143 Pfam PF01047 MarR family 29 87 3.2E-17 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_14595 5de9a45d293687aed99d261b8179fd72 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 3.2E-24 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_14595 5de9a45d293687aed99d261b8179fd72 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 47 63 3.2E-24 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_14595 5de9a45d293687aed99d261b8179fd72 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 79 3.2E-24 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_14595 5de9a45d293687aed99d261b8179fd72 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 3.2E-24 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_14595 5de9a45d293687aed99d261b8179fd72 143 SMART SM00347 22 123 1.5E-26 T 15-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NJ56_14595 5de9a45d293687aed99d261b8179fd72 143 Gene3D G3DSA:1.10.10.10 1 142 3.4E-36 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_14595 5de9a45d293687aed99d261b8179fd72 143 ProSitePatterns PS01117 MarR-type HTH domain signature. 62 96 - T 15-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site NJ56_14595 5de9a45d293687aed99d261b8179fd72 143 SUPERFAMILY SSF46785 4 139 3.14E-32 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_14595 5de9a45d293687aed99d261b8179fd72 143 Hamap MF_01819 Transcriptional regulator SlyA [slyA]. 1 143 36.807 T 15-10-2018 IPR023071 Transcriptional regulator, SlyA NJ56_05130 a0f0deb5ebe5d2a2f019074857aa1884 106 Pfam PF08850 Domain of unknown function (DUF1820) 7 99 3.1E-40 T 15-10-2018 IPR014949 Protein of unknown function DUF1820 NJ56_05130 a0f0deb5ebe5d2a2f019074857aa1884 106 PIRSF PIRSF028538 1 106 2.0E-43 T 15-10-2018 IPR014949 Protein of unknown function DUF1820 NJ56_09955 e5ea180cf111caeae6051825d785544a 323 Pfam PF00268 Ribonucleotide reductase, small chain 13 277 7.1E-86 T 15-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09955 e5ea180cf111caeae6051825d785544a 323 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 10 323 3.8E-144 T 15-10-2018 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NJ56_09955 e5ea180cf111caeae6051825d785544a 323 Gene3D G3DSA:1.10.620.20 6 292 4.2E-112 T 15-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 NJ56_09955 e5ea180cf111caeae6051825d785544a 323 SUPERFAMILY SSF47240 9 323 4.28E-103 T 15-10-2018 IPR009078 Ferritin-like superfamily NJ56_09955 e5ea180cf111caeae6051825d785544a 323 PIRSF PIRSF000355 4 320 4.1E-82 T 15-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_09955 e5ea180cf111caeae6051825d785544a 323 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 101 117 - T 15-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 NJ56_16370 c6011957e2995ff3122fb2ed448829af 148 PRINTS PR00502 NUDIX hydrolase family signature 45 60 1.9E-5 T 15-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 NJ56_16370 c6011957e2995ff3122fb2ed448829af 148 PRINTS PR00502 NUDIX hydrolase family signature 31 45 1.9E-5 T 15-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 NJ56_16370 c6011957e2995ff3122fb2ed448829af 148 SUPERFAMILY SSF55811 2 134 3.52E-30 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_16370 c6011957e2995ff3122fb2ed448829af 148 Gene3D G3DSA:3.90.79.10 1 148 1.9E-44 T 15-10-2018 NJ56_16370 c6011957e2995ff3122fb2ed448829af 148 Pfam PF00293 NUDIX domain 4 116 6.1E-17 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_16370 c6011957e2995ff3122fb2ed448829af 148 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 15-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NJ56_04515 becef1933aaf57c127941d3f90bca80f 100 Pfam PF09686 Plasmid protein of unknown function (Plasmid_RAQPRD) 20 95 2.9E-27 T 15-10-2018 IPR019110 Uncharacterised protein family, RAQPRD NJ56_04515 becef1933aaf57c127941d3f90bca80f 100 TIGRFAM TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family 10 97 1.8E-27 T 15-10-2018 IPR019110 Uncharacterised protein family, RAQPRD NJ56_07960 bf9fa0d390e0c1cf4c89fd2a0bad6352 80 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 1 79 6.0E-32 T 15-10-2018 IPR010398 Protein of unknown function DUF997 NJ56_07960 bf9fa0d390e0c1cf4c89fd2a0bad6352 80 Pfam PF06196 Protein of unknown function (DUF997) 7 77 2.5E-32 T 15-10-2018 IPR010398 Protein of unknown function DUF997 NJ56_01325 020f5294bb9ab79736ff779a581b4386 153 Pfam PF01037 Lrp/AsnC ligand binding domain 68 141 1.3E-20 T 15-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NJ56_01325 020f5294bb9ab79736ff779a581b4386 153 Gene3D G3DSA:3.30.70.920 55 139 7.2E-24 T 15-10-2018 NJ56_01325 020f5294bb9ab79736ff779a581b4386 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 3.1E-11 T 15-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 NJ56_01325 020f5294bb9ab79736ff779a581b4386 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 3.1E-11 T 15-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 NJ56_01325 020f5294bb9ab79736ff779a581b4386 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 3.1E-11 T 15-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 NJ56_01325 020f5294bb9ab79736ff779a581b4386 153 SMART SM00344 2 111 9.8E-42 T 15-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 NJ56_01325 020f5294bb9ab79736ff779a581b4386 153 SUPERFAMILY SSF46785 2 92 4.45E-17 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_01325 020f5294bb9ab79736ff779a581b4386 153 Gene3D G3DSA:1.10.10.10 3 54 6.1E-24 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_01325 020f5294bb9ab79736ff779a581b4386 153 SUPERFAMILY SSF54909 62 151 1.47E-21 T 15-10-2018 IPR011008 Dimeric alpha-beta barrel NJ56_01325 020f5294bb9ab79736ff779a581b4386 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 2.0E-18 T 15-10-2018 NJ56_18140 e1f345d2288d78901f136d13db19d1ec 67 Pfam PF05509 TraY domain 13 60 4.0E-17 T 15-10-2018 IPR008876 Relaxosome protein TraY GO:0000746|GO:0003677 NJ56_17295 bab27f612b208e175d2ee3037d4ede56 451 Pfam PF03606 C4-dicarboxylate anaerobic carrier 2 448 6.6E-130 T 15-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 NJ56_17295 bab27f612b208e175d2ee3037d4ede56 451 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 55 438 4.0E-177 T 15-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 NJ56_03290 7b602cfec07d4e18fb17e3b0147ff806 536 ProSitePatterns PS00149 Sulfatases signature 2. 152 162 - T 15-10-2018 IPR024607 Sulfatase, conserved site NJ56_03290 7b602cfec07d4e18fb17e3b0147ff806 536 SUPERFAMILY SSF53649 33 521 4.94E-108 T 15-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 NJ56_03290 7b602cfec07d4e18fb17e3b0147ff806 536 Gene3D G3DSA:3.40.720.10 32 430 4.1E-99 T 15-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 NJ56_03290 7b602cfec07d4e18fb17e3b0147ff806 536 Pfam PF00884 Sulfatase 35 385 1.8E-74 T 15-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 NJ56_03290 7b602cfec07d4e18fb17e3b0147ff806 536 Gene3D G3DSA:3.30.1120.10 453 519 2.4E-12 T 15-10-2018 NJ56_14835 83446338b7c647e28235938e7e156e52 112 PIRSF PIRSF025560 1 112 2.9E-39 T 15-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 NJ56_14835 83446338b7c647e28235938e7e156e52 112 Pfam PF07027 Protein of unknown function (DUF1318) 25 112 1.7E-28 T 15-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 NJ56_03645 46a3b2d9dcac4176d4c28f4fbf084c2c 150 Pfam PF06754 Phosphonate metabolism protein PhnG 6 148 3.3E-52 T 15-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 NJ56_03645 46a3b2d9dcac4176d4c28f4fbf084c2c 150 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 6 149 1.3E-50 T 15-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 NJ56_05990 84759536cafd2e5b0f8677137e00cdac 207 Gene3D G3DSA:3.40.50.300 8 183 6.0E-75 T 15-10-2018 NJ56_05990 84759536cafd2e5b0f8677137e00cdac 207 SMART SM00072 3 187 8.7E-81 T 15-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit NJ56_05990 84759536cafd2e5b0f8677137e00cdac 207 Pfam PF00625 Guanylate kinase 5 186 5.9E-67 T 15-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit NJ56_05990 84759536cafd2e5b0f8677137e00cdac 207 Gene3D G3DSA:3.30.63.10 37 96 6.0E-75 T 15-10-2018 NJ56_05990 84759536cafd2e5b0f8677137e00cdac 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 2.6E-75 T 15-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 NJ56_05990 84759536cafd2e5b0f8677137e00cdac 207 SUPERFAMILY SSF52540 3 189 3.03E-70 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05990 84759536cafd2e5b0f8677137e00cdac 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 15-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 NJ56_05990 84759536cafd2e5b0f8677137e00cdac 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 37.464 T 15-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 NJ56_06575 29f7dabe2d02ec6ec196b2c4da524151 309 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 307 9.8E-119 T 15-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 NJ56_06575 29f7dabe2d02ec6ec196b2c4da524151 309 SUPERFAMILY SSF144020 26 308 1.57E-94 T 15-10-2018 IPR024064 FdhE-like superfamily NJ56_06575 29f7dabe2d02ec6ec196b2c4da524151 309 Pfam PF04216 Protein involved in formate dehydrogenase formation 23 306 3.1E-112 T 15-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 NJ56_06575 29f7dabe2d02ec6ec196b2c4da524151 309 Gene3D G3DSA:3.90.1670.10 26 309 2.1E-89 T 15-10-2018 IPR024064 FdhE-like superfamily NJ56_06575 29f7dabe2d02ec6ec196b2c4da524151 309 Hamap MF_00611 Protein FdhE [fdhE]. 3 308 49.412 T 15-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 NJ56_06575 29f7dabe2d02ec6ec196b2c4da524151 309 PIRSF PIRSF018296 1 309 2.5E-133 T 15-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 NJ56_08260 9d8910f92fc9ba37793e86f5d249bf6c 130 SUPERFAMILY SSF54211 5 130 2.62E-49 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_08260 9d8910f92fc9ba37793e86f5d249bf6c 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.962 T 15-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid NJ56_08260 9d8910f92fc9ba37793e86f5d249bf6c 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 15-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 NJ56_08260 9d8910f92fc9ba37793e86f5d249bf6c 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 4.1E-46 T 15-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 NJ56_08260 9d8910f92fc9ba37793e86f5d249bf6c 130 Gene3D G3DSA:3.30.230.10 1 130 4.5E-54 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_15895 ada7272597588055e788f9dbb24a4d7a 252 Pfam PF03932 CutC family 3 199 1.6E-72 T 15-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 NJ56_15895 ada7272597588055e788f9dbb24a4d7a 252 SUPERFAMILY SSF110395 3 242 2.62E-75 T 15-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 NJ56_15895 ada7272597588055e788f9dbb24a4d7a 252 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 2 202 27.463 T 15-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 NJ56_15895 ada7272597588055e788f9dbb24a4d7a 252 Gene3D G3DSA:3.20.20.380 1 247 7.2E-88 T 15-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 NJ56_00285 ecbe6007b22ad9d7907a8f3718f896bf 385 SUPERFAMILY SSF74653 297 385 6.47E-21 T 15-10-2018 NJ56_00285 ecbe6007b22ad9d7907a8f3718f896bf 385 TIGRFAM TIGR02794 tolA_full: protein TolA 13 384 8.2E-94 T 15-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 NJ56_00285 ecbe6007b22ad9d7907a8f3718f896bf 385 Pfam PF06519 TolA C-terminal 290 382 2.1E-36 T 15-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 NJ56_00285 ecbe6007b22ad9d7907a8f3718f896bf 385 Gene3D G3DSA:3.30.1150.10 307 379 4.2E-35 T 15-10-2018 NJ56_15150 d4ab831adbfa69326572954873018a86 295 Pfam PF12833 Helix-turn-helix domain 30 106 1.1E-18 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_15150 d4ab831adbfa69326572954873018a86 295 Gene3D G3DSA:3.20.80.10 125 294 3.9E-21 T 15-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily NJ56_15150 d4ab831adbfa69326572954873018a86 295 Pfam PF06445 GyrI-like small molecule binding domain 131 279 1.3E-12 T 15-10-2018 IPR029442 GyrI-like small molecule binding domain NJ56_15150 d4ab831adbfa69326572954873018a86 295 SUPERFAMILY SSF46689 8 57 1.21E-7 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_15150 d4ab831adbfa69326572954873018a86 295 Gene3D G3DSA:1.10.10.60 58 123 1.9E-19 T 15-10-2018 NJ56_15150 d4ab831adbfa69326572954873018a86 295 Gene3D G3DSA:1.10.10.60 7 57 1.1E-20 T 15-10-2018 NJ56_15150 d4ab831adbfa69326572954873018a86 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 75 90 2.0E-7 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_15150 d4ab831adbfa69326572954873018a86 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 90 106 2.0E-7 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_15150 d4ab831adbfa69326572954873018a86 295 SMART SM00342 23 106 2.8E-29 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_15150 d4ab831adbfa69326572954873018a86 295 SUPERFAMILY SSF46689 61 108 7.17E-11 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_15150 d4ab831adbfa69326572954873018a86 295 SUPERFAMILY SSF55136 127 273 4.01E-14 T 15-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily NJ56_01340 f31584ffbbaef83dcb749efc3ccd8c71 567 SUPERFAMILY SSF53850 114 563 4.34E-53 T 15-10-2018 NJ56_01340 f31584ffbbaef83dcb749efc3ccd8c71 567 Gene3D G3DSA:3.40.190.10 116 311 1.3E-24 T 15-10-2018 NJ56_01340 f31584ffbbaef83dcb749efc3ccd8c71 567 Pfam PF12793 Sugar transport-related sRNA regulator N-term 6 118 3.7E-37 T 15-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain NJ56_01340 f31584ffbbaef83dcb749efc3ccd8c71 567 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 165 361 1.9E-17 T 15-10-2018 IPR000914 Solute-binding protein family 5 domain NJ56_05135 ca5921f671993809ac5bb90ee14c69dc 208 Pfam PF07947 YhhN family 26 206 1.4E-42 T 15-10-2018 IPR012506 YhhN-like GO:0016021 NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 9 743 0.0 T 15-10-2018 NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 469 4.2E-134 T 15-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 SUPERFAMILY SSF56719 32 483 2.35E-154 T 15-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 SUPERFAMILY SSF101904 498 745 1.2E-51 T 15-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 SMART SM00434 12 462 4.0E-236 T 15-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 Gene3D G3DSA:3.90.199.10 31 162 8.5E-59 T 15-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 5 743 34.023 T 15-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 Gene3D G3DSA:3.30.1360.40 163 344 6.6E-72 T 15-10-2018 NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 695 1.2E-6 T 15-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 597 633 3.1E-4 T 15-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 Gene3D G3DSA:2.120.10.90 501 728 7.2E-11 T 15-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal NJ56_08765 e7fbc002904cc941d9c143dad392eb0c 757 Gene3D G3DSA:1.10.268.10 345 484 2.2E-45 T 15-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 NJ56_06290 020d4c244810f160a6a6267cfd179f77 346 Gene3D G3DSA:3.40.190.10 103 278 8.9E-130 T 15-10-2018 NJ56_06290 020d4c244810f160a6a6267cfd179f77 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 335 9.1E-128 T 15-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 NJ56_06290 020d4c244810f160a6a6267cfd179f77 346 Pfam PF12849 PBP superfamily domain 23 307 9.0E-63 T 15-10-2018 IPR024370 PBP domain NJ56_06290 020d4c244810f160a6a6267cfd179f77 346 Gene3D G3DSA:3.40.190.10 29 326 8.9E-130 T 15-10-2018 NJ56_06290 020d4c244810f160a6a6267cfd179f77 346 PIRSF PIRSF002756 2 338 1.5E-106 T 15-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 NJ56_06290 020d4c244810f160a6a6267cfd179f77 346 SUPERFAMILY SSF53850 29 335 6.04E-98 T 15-10-2018 NJ56_08010 87eb874b12ed434a1eba9480e41c6e41 162 PIRSF PIRSF018472 1 162 1.7E-56 T 15-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type NJ56_08010 87eb874b12ed434a1eba9480e41c6e41 162 Pfam PF04093 rod shape-determining protein MreD 7 154 4.2E-42 T 15-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 NJ56_08010 87eb874b12ed434a1eba9480e41c6e41 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 9 154 3.0E-41 T 15-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 NJ56_06485 09d7a8178167fc1d782f2c1f4484c734 239 Pfam PF11254 Protein of unknown function (DUF3053) 18 235 1.1E-92 T 15-10-2018 IPR021413 Protein of unknown function DUF3053 NJ56_15350 9d094652b0e5d25b3ad6b0d21bb12a28 575 Pfam PF01740 STAS domain 445 531 1.1E-12 T 15-10-2018 IPR002645 STAS domain NJ56_15350 9d094652b0e5d25b3ad6b0d21bb12a28 575 Gene3D G3DSA:3.30.750.24 436 564 9.2E-20 T 15-10-2018 IPR036513 STAS domain superfamily NJ56_15350 9d094652b0e5d25b3ad6b0d21bb12a28 575 SUPERFAMILY SSF52091 444 537 9.03E-11 T 15-10-2018 IPR036513 STAS domain superfamily NJ56_15350 9d094652b0e5d25b3ad6b0d21bb12a28 575 Pfam PF00916 Sulfate permease family 24 382 3.3E-85 T 15-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 NJ56_04900 996c029f19fb948e1eb220fd554d3bcd 162 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 159 4.1E-54 T 15-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 NJ56_04900 996c029f19fb948e1eb220fd554d3bcd 162 SUPERFAMILY SSF82679 2 98 4.71E-25 T 15-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 NJ56_04900 996c029f19fb948e1eb220fd554d3bcd 162 Pfam PF02357 Transcription termination factor nusG 3 96 2.8E-18 T 15-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 NJ56_04900 996c029f19fb948e1eb220fd554d3bcd 162 Gene3D G3DSA:3.30.70.940 1 162 4.6E-53 T 15-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 NJ56_04900 996c029f19fb948e1eb220fd554d3bcd 162 SMART SM00738 1 100 2.9E-20 T 15-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 NJ56_04900 996c029f19fb948e1eb220fd554d3bcd 162 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 162 43.725 T 15-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 NJ56_08905 08e2cdbe6e1382a9fcf478653183f2b7 73 Gene3D G3DSA:3.90.820.10 2 73 4.0E-30 T 15-10-2018 NJ56_08905 08e2cdbe6e1382a9fcf478653183f2b7 73 SUPERFAMILY SSF160582 6 71 8.11E-27 T 15-10-2018 IPR038020 MbtH-like domain superfamily NJ56_08905 08e2cdbe6e1382a9fcf478653183f2b7 73 Pfam PF03621 MbtH-like protein 7 56 8.8E-24 T 15-10-2018 IPR005153 MbtH-like domain NJ56_08905 08e2cdbe6e1382a9fcf478653183f2b7 73 SMART SM00923 7 57 1.7E-25 T 15-10-2018 IPR005153 MbtH-like domain NJ56_06700 5e6d5c757dc98254080afc8b545cd906 546 TIGRFAM TIGR03368 cellulose_yhjU: cellulose synthase operon protein YhjU 21 544 2.9E-225 T 15-10-2018 IPR017744 Cellulose biosynthesis protein BcsG NJ56_06700 5e6d5c757dc98254080afc8b545cd906 546 Pfam PF11658 Cellulose biosynthesis protein BcsG 23 541 4.0E-231 T 15-10-2018 IPR017744 Cellulose biosynthesis protein BcsG NJ56_17925 d85160782c94bf6f056c9e755611a4d4 690 Gene3D G3DSA:3.40.50.300 163 564 1.1E-103 T 15-10-2018 NJ56_17925 d85160782c94bf6f056c9e755611a4d4 690 SUPERFAMILY SSF52540 193 570 2.94E-47 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17925 d85160782c94bf6f056c9e755611a4d4 690 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 180 564 6.7E-98 T 15-10-2018 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain NJ56_17925 d85160782c94bf6f056c9e755611a4d4 690 Gene3D G3DSA:1.10.8.80 256 368 1.1E-103 T 15-10-2018 NJ56_07425 6fccf2381e231854536d5445b8f3f225 179 Gene3D G3DSA:3.30.1440.10 1 179 2.4E-81 T 15-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07425 6fccf2381e231854536d5445b8f3f225 179 SUPERFAMILY SSF55282 4 179 6.83E-79 T 15-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07425 6fccf2381e231854536d5445b8f3f225 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 45.008 T 15-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07425 6fccf2381e231854536d5445b8f3f225 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 4.9E-41 T 15-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07425 6fccf2381e231854536d5445b8f3f225 179 Pfam PF00281 Ribosomal protein L5 24 80 1.1E-28 T 15-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07425 6fccf2381e231854536d5445b8f3f225 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 15-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07425 6fccf2381e231854536d5445b8f3f225 179 PIRSF PIRSF002161 1 179 6.8E-67 T 15-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_09970 a2b75030dcc3e8a16df4da28860b7f91 78 Pfam PF00462 Glutaredoxin 3 61 3.8E-15 T 15-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 NJ56_09970 a2b75030dcc3e8a16df4da28860b7f91 78 Gene3D G3DSA:3.40.30.10 1 78 1.5E-28 T 15-10-2018 NJ56_09970 a2b75030dcc3e8a16df4da28860b7f91 78 SUPERFAMILY SSF52833 1 72 9.44E-19 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_09970 a2b75030dcc3e8a16df4da28860b7f91 78 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 72 2.0E-34 T 15-10-2018 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 NJ56_10275 7178b7059cabe8e1518258b9232dc408 559 Gene3D G3DSA:3.40.50.300 299 559 9.1E-51 T 15-10-2018 NJ56_10275 7178b7059cabe8e1518258b9232dc408 559 PIRSF PIRSF003128 7 559 1.8E-154 T 15-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 NJ56_10275 7178b7059cabe8e1518258b9232dc408 559 Gene3D G3DSA:3.40.50.300 6 205 6.2E-43 T 15-10-2018 NJ56_10275 7178b7059cabe8e1518258b9232dc408 559 SUPERFAMILY SSF52540 7 521 7.98E-65 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_10275 7178b7059cabe8e1518258b9232dc408 559 Pfam PF02463 RecF/RecN/SMC N terminal domain 7 515 1.8E-18 T 15-10-2018 IPR003395 RecF/RecN/SMC, N-terminal NJ56_10275 7178b7059cabe8e1518258b9232dc408 559 TIGRFAM TIGR00634 recN: DNA repair protein RecN 7 558 1.1E-166 T 15-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 NJ56_06825 7da6d6ca641464a942701fb0ac364666 146 SUPERFAMILY SSF52402 3 139 7.12E-32 T 15-10-2018 NJ56_06825 7da6d6ca641464a942701fb0ac364666 146 PIRSF PIRSF006276 1 141 5.4E-54 T 15-10-2018 IPR006015 Universal stress protein A NJ56_06825 7da6d6ca641464a942701fb0ac364666 146 Gene3D G3DSA:3.40.50.620 2 142 2.5E-51 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_06825 7da6d6ca641464a942701fb0ac364666 146 Pfam PF00582 Universal stress protein family 3 138 8.5E-21 T 15-10-2018 IPR006016 UspA NJ56_08715 b4a995a1959f506e9fe5c56464664074 229 Hamap MF_01188 UPF0441 protein YgiB [ygiB]. 1 229 43.505 T 15-10-2018 IPR009576 Biofilm formation YgiB NJ56_08715 b4a995a1959f506e9fe5c56464664074 229 Pfam PF06693 Protein of unknown function (DUF1190) 41 213 2.0E-55 T 15-10-2018 IPR009576 Biofilm formation YgiB NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 SUPERFAMILY SSF53383 1 470 3.93E-130 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 Gene3D G3DSA:1.20.1340.10 1 81 5.4E-32 T 15-10-2018 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 Gene3D G3DSA:3.40.640.10 84 369 9.3E-94 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 288 309 - T 15-10-2018 IPR021115 Pyridoxal-phosphate binding site GO:0016831 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 Gene3D G3DSA:3.90.1150.10 370 473 1.7E-11 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 47 66 5.8E-45 T 15-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 385 404 5.8E-45 T 15-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 73 92 5.8E-45 T 15-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 94 112 5.8E-45 T 15-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 113 132 5.8E-45 T 15-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 342 357 5.8E-45 T 15-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 29 46 5.8E-45 T 15-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 6 25 5.8E-45 T 15-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 NJ56_14995 de182753f3df32e7680d2a6b71ecc2af 473 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 35 402 6.9E-100 T 15-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 NJ56_11320 97149f37b5c2868523f61b4529e0fd43 378 SUPERFAMILY SSF64438 102 367 5.49E-62 T 15-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic NJ56_11320 97149f37b5c2868523f61b4529e0fd43 378 Gene3D G3DSA:3.60.100.10 97 370 1.0E-72 T 15-10-2018 IPR037040 Cytotoxic necrotizing factor, Rho-activating domain superfamily NJ56_11320 97149f37b5c2868523f61b4529e0fd43 378 Pfam PF05785 Rho-activating domain of cytotoxic necrotizing factor 103 367 1.8E-50 T 15-10-2018 IPR008430 Cytotoxic necrotizing factor, Rho-activating domain NJ56_14305 71263f4d5ca6dbbf608c536cc5177a2a 205 Pfam PF05069 Phage virion morphogenesis family 115 199 3.4E-15 T 15-10-2018 IPR006522 Phage virion morphogensis protein NJ56_14305 71263f4d5ca6dbbf608c536cc5177a2a 205 Pfam PF05069 Phage virion morphogenesis family 4 65 9.7E-11 T 15-10-2018 IPR006522 Phage virion morphogensis protein NJ56_14305 71263f4d5ca6dbbf608c536cc5177a2a 205 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 126 195 1.9E-11 T 15-10-2018 IPR006522 Phage virion morphogensis protein NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 SMART SM00091 20 86 2.4E-10 T 15-10-2018 IPR000014 PAS domain NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 SMART SM00091 266 332 2.8E-5 T 15-10-2018 IPR000014 PAS domain NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 SMART SM00091 144 209 0.34 T 15-10-2018 IPR000014 PAS domain NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 SUPERFAMILY SSF55785 254 377 1.8E-22 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 SUPERFAMILY SSF55073 403 563 4.16E-45 T 15-10-2018 IPR029787 Nucleotide cyclase NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 Pfam PF08447 PAS fold 290 374 1.5E-15 T 15-10-2018 IPR013655 PAS fold-3 GO:0005515 NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 Gene3D G3DSA:3.30.450.20 141 268 2.6E-18 T 15-10-2018 NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 SMART SM00267 387 565 1.3E-56 T 15-10-2018 IPR000160 GGDEF domain NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 Pfam PF08448 PAS fold 28 133 6.5E-12 T 15-10-2018 IPR013656 PAS fold-4 NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 Pfam PF08448 PAS fold 152 252 6.1E-9 T 15-10-2018 IPR013656 PAS fold-4 NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 SMART SM00086 93 135 0.063 T 15-10-2018 IPR001610 PAC motif NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 SMART SM00086 338 380 0.0015 T 15-10-2018 IPR001610 PAC motif NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 394 564 3.8E-49 T 15-10-2018 IPR000160 GGDEF domain NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 Gene3D G3DSA:3.30.450.20 269 377 6.4E-24 T 15-10-2018 NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 Pfam PF00990 Diguanylate cyclase, GGDEF domain 398 561 5.1E-45 T 15-10-2018 IPR000160 GGDEF domain NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 Gene3D G3DSA:3.30.450.20 16 135 7.5E-21 T 15-10-2018 NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 Gene3D G3DSA:3.30.70.270 384 566 1.2E-55 T 15-10-2018 NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 262 387 2.5E-15 T 15-10-2018 IPR000014 PAS domain NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 17 134 2.1E-17 T 15-10-2018 IPR000014 PAS domain NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 SUPERFAMILY SSF55785 9 133 3.67E-24 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_14105 fd96e3af11a77cf4d58fd6d8de357f3f 569 SUPERFAMILY SSF55785 145 244 8.25E-11 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_14765 8405448c4c0fff9173d0a68c528d4165 324 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 3 109 5.2E-15 T 15-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain NJ56_14765 8405448c4c0fff9173d0a68c528d4165 324 SUPERFAMILY SSF54826 3 109 2.16E-28 T 15-10-2018 NJ56_14765 8405448c4c0fff9173d0a68c528d4165 324 Gene3D G3DSA:3.20.20.120 116 321 2.7E-55 T 15-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily NJ56_14765 8405448c4c0fff9173d0a68c528d4165 324 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 173 204 - T 15-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 NJ56_14765 8405448c4c0fff9173d0a68c528d4165 324 SUPERFAMILY SSF51604 117 319 3.01E-51 T 15-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily NJ56_14765 8405448c4c0fff9173d0a68c528d4165 324 SMART SM00922 130 223 3.0E-15 T 15-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal NJ56_14765 8405448c4c0fff9173d0a68c528d4165 324 Gene3D G3DSA:3.30.390.10 1 103 2.1E-28 T 15-10-2018 IPR029017 Enolase-like, N-terminal NJ56_14765 8405448c4c0fff9173d0a68c528d4165 324 Pfam PF13378 Enolase C-terminal domain-like 139 294 1.2E-23 T 15-10-2018 IPR029065 Enolase C-terminal domain-like NJ56_13790 a5e6a56c18fe77d56f2c5706d2c4be70 282 SMART SM00090 5 228 2.0E-14 T 15-10-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 NJ56_13790 a5e6a56c18fe77d56f2c5706d2c4be70 282 SUPERFAMILY SSF56112 18 223 2.97E-19 T 15-10-2018 IPR011009 Protein kinase-like domain superfamily NJ56_13790 a5e6a56c18fe77d56f2c5706d2c4be70 282 Gene3D G3DSA:1.10.510.10 144 221 7.3E-18 T 15-10-2018 NJ56_13790 a5e6a56c18fe77d56f2c5706d2c4be70 282 Pfam PF01163 RIO1 family 31 219 5.7E-42 T 15-10-2018 NJ56_13790 a5e6a56c18fe77d56f2c5706d2c4be70 282 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 15-10-2018 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 NJ56_13790 a5e6a56c18fe77d56f2c5706d2c4be70 282 Gene3D G3DSA:3.30.200.20 16 126 4.6E-5 T 15-10-2018 NJ56_10860 ad11bde7162df0f50af8be41d3b85ad3 235 Pfam PF00308 Bacterial dnaA protein 18 214 2.5E-17 T 15-10-2018 IPR013317 Chromosomal replication initiator protein DnaA NJ56_10860 ad11bde7162df0f50af8be41d3b85ad3 235 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 133 160 7.5E-7 T 15-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like NJ56_10860 ad11bde7162df0f50af8be41d3b85ad3 235 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 45 65 7.5E-7 T 15-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like NJ56_10860 ad11bde7162df0f50af8be41d3b85ad3 235 SUPERFAMILY SSF52540 19 213 8.92E-23 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_10860 ad11bde7162df0f50af8be41d3b85ad3 235 Gene3D G3DSA:1.10.8.60 169 235 3.3E-27 T 15-10-2018 NJ56_10860 ad11bde7162df0f50af8be41d3b85ad3 235 Hamap MF_01158 DnaA regulatory inactivator Hda [hda]. 7 235 58.79 T 15-10-2018 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae NJ56_10860 ad11bde7162df0f50af8be41d3b85ad3 235 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 8 233 8.7E-86 T 15-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 NJ56_10860 ad11bde7162df0f50af8be41d3b85ad3 235 Gene3D G3DSA:3.40.50.300 2 166 1.7E-35 T 15-10-2018 NJ56_15200 8165c3edcaaa68226b0d48660b199d87 245 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 68 81 - T 15-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_15200 8165c3edcaaa68226b0d48660b199d87 245 SUPERFAMILY SSF51366 15 240 2.27E-78 T 15-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 NJ56_15200 8165c3edcaaa68226b0d48660b199d87 245 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 15 236 7.0E-52 T 15-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_15200 8165c3edcaaa68226b0d48660b199d87 245 SMART SM00934 16 237 2.1E-100 T 15-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_15200 8165c3edcaaa68226b0d48660b199d87 245 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 14 242 39.544 T 15-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_15200 8165c3edcaaa68226b0d48660b199d87 245 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 18 238 2.8E-56 T 15-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_15200 8165c3edcaaa68226b0d48660b199d87 245 Gene3D G3DSA:3.20.20.70 3 243 1.6E-85 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_18135 a16b96876f0250ca306a332056282bc3 238 Pfam PF08448 PAS fold 28 135 2.8E-6 T 15-10-2018 IPR013656 PAS fold-4 NJ56_18135 a16b96876f0250ca306a332056282bc3 238 SUPERFAMILY SSF46894 155 218 4.42E-13 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_18135 a16b96876f0250ca306a332056282bc3 238 Gene3D G3DSA:1.10.10.10 139 221 4.3E-12 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_18135 a16b96876f0250ca306a332056282bc3 238 ProSitePatterns PS00622 LuxR-type HTH domain signature. 177 204 - T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_18135 a16b96876f0250ca306a332056282bc3 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 193 6.8E-6 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_18135 a16b96876f0250ca306a332056282bc3 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 205 6.8E-6 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_18135 a16b96876f0250ca306a332056282bc3 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 177 6.8E-6 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_18135 a16b96876f0250ca306a332056282bc3 238 Gene3D G3DSA:3.30.450.20 25 135 7.5E-6 T 15-10-2018 NJ56_18135 a16b96876f0250ca306a332056282bc3 238 SMART SM00421 160 217 8.8E-9 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_18135 a16b96876f0250ca306a332056282bc3 238 Pfam PF00196 Bacterial regulatory proteins, luxR family 162 214 2.5E-9 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 ProSitePatterns PS01155 Endonuclease III family signature. 103 132 - T 15-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 SMART SM00478 40 191 1.8E-50 T 15-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 37 169 1.2E-21 T 15-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 193 209 - T 15-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 Pfam PF00633 Helix-hairpin-helix motif 100 128 6.6E-9 T 15-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 Pfam PF14815 NUDIX domain 235 344 1.4E-23 T 15-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 Gene3D G3DSA:3.90.79.10 224 351 3.6E-13 T 15-10-2018 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 6 277 5.1E-126 T 15-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 193 209 3.5E-4 T 15-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 Gene3D G3DSA:1.10.340.30 22 133 5.0E-90 T 15-10-2018 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 SUPERFAMILY SSF48150 3 226 2.98E-79 T 15-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 SMART SM00525 192 212 1.1E-4 T 15-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 Gene3D G3DSA:1.10.1670.10 11 212 5.0E-90 T 15-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 NJ56_09060 28ef475e3d21044cba31e48d7c36bbd6 366 SUPERFAMILY SSF55811 221 346 4.19E-24 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_07905 0b8f7627f8ccdc9e46111c03d187194a 549 Gene3D G3DSA:1.20.1530.20 1 346 2.5E-10 T 15-10-2018 IPR038770 Sodium/solute symporter superfamily NJ56_07905 0b8f7627f8ccdc9e46111c03d187194a 549 Pfam PF00999 Sodium/hydrogen exchanger family 8 421 1.0E-77 T 15-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 NJ56_07905 0b8f7627f8ccdc9e46111c03d187194a 549 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 7 546 3.8E-207 T 15-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 NJ56_03910 cc9a94f65119ec760f5a8abee4fe8643 459 SUPERFAMILY SSF51984 1 90 5.36E-23 T 15-10-2018 NJ56_03910 cc9a94f65119ec760f5a8abee4fe8643 459 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 360 3.3E-9 T 15-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 NJ56_03910 cc9a94f65119ec760f5a8abee4fe8643 459 SUPERFAMILY SSF53244 312 449 3.01E-36 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_03910 cc9a94f65119ec760f5a8abee4fe8643 459 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 3.0E-259 T 15-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 NJ56_03910 cc9a94f65119ec760f5a8abee4fe8643 459 Gene3D G3DSA:3.40.1190.10 91 313 3.9E-53 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_03910 cc9a94f65119ec760f5a8abee4fe8643 459 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 59.025 T 15-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 NJ56_03910 cc9a94f65119ec760f5a8abee4fe8643 459 Gene3D G3DSA:3.90.190.20 314 451 9.5E-30 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_03910 cc9a94f65119ec760f5a8abee4fe8643 459 Pfam PF01225 Mur ligase family, catalytic domain 2 98 7.4E-18 T 15-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 NJ56_03910 cc9a94f65119ec760f5a8abee4fe8643 459 Gene3D G3DSA:3.40.50.720 1 90 1.7E-34 T 15-10-2018 NJ56_03910 cc9a94f65119ec760f5a8abee4fe8643 459 SUPERFAMILY SSF53623 95 308 1.15E-49 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_03910 cc9a94f65119ec760f5a8abee4fe8643 459 Pfam PF08245 Mur ligase middle domain 108 291 8.7E-19 T 15-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 NJ56_00880 3c180c121af309973b351861c2a528d9 429 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 3.1E-122 T 15-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 NJ56_00880 3c180c121af309973b351861c2a528d9 429 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 3.1E-122 T 15-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 NJ56_00880 3c180c121af309973b351861c2a528d9 429 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 3.1E-122 T 15-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 NJ56_00880 3c180c121af309973b351861c2a528d9 429 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 3.1E-122 T 15-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 NJ56_00880 3c180c121af309973b351861c2a528d9 429 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 3.1E-122 T 15-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 NJ56_00880 3c180c121af309973b351861c2a528d9 429 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 3.1E-122 T 15-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 NJ56_00880 3c180c121af309973b351861c2a528d9 429 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 3.1E-122 T 15-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 NJ56_00880 3c180c121af309973b351861c2a528d9 429 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 3.1E-122 T 15-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 NJ56_00880 3c180c121af309973b351861c2a528d9 429 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 3 426 2.4E-220 T 15-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 NJ56_00880 3c180c121af309973b351861c2a528d9 429 Pfam PF02040 Arsenical pump membrane protein 4 423 2.6E-160 T 15-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 NJ56_06335 1b2b19d810aad8714bd7cfcbd7ce3a82 652 SMART SM00283 404 651 3.3E-79 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_06335 1b2b19d810aad8714bd7cfcbd7ce3a82 652 Gene3D G3DSA:3.30.450.20 54 222 6.3E-19 T 15-10-2018 NJ56_06335 1b2b19d810aad8714bd7cfcbd7ce3a82 652 SMART SM00304 349 403 5.9E-7 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_06335 1b2b19d810aad8714bd7cfcbd7ce3a82 652 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 463 617 5.7E-50 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_06335 1b2b19d810aad8714bd7cfcbd7ce3a82 652 SUPERFAMILY SSF58104 371 652 2.35E-71 T 15-10-2018 NJ56_06335 1b2b19d810aad8714bd7cfcbd7ce3a82 652 Gene3D G3DSA:1.10.287.950 350 652 4.4E-82 T 15-10-2018 NJ56_06335 1b2b19d810aad8714bd7cfcbd7ce3a82 652 Pfam PF02743 Cache domain 64 310 9.0E-26 T 15-10-2018 IPR033479 Double Cache domain 1 NJ56_06805 39a2440351b2311504c75bd837e514ce 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 241 247 - T 15-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NJ56_06805 39a2440351b2311504c75bd837e514ce 280 SUPERFAMILY SSF53335 9 279 7.41E-100 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_06805 39a2440351b2311504c75bd837e514ce 280 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 41.928 T 15-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 NJ56_06805 39a2440351b2311504c75bd837e514ce 280 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 278 2.3E-113 T 15-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 NJ56_06805 39a2440351b2311504c75bd837e514ce 280 Gene3D G3DSA:3.40.50.150 1 280 7.4E-120 T 15-10-2018 NJ56_12205 e10e468a4a782b2eeabd9c26b9bcc478 94 Pfam PF01386 Ribosomal L25p family 4 91 3.5E-23 T 15-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 NJ56_12205 e10e468a4a782b2eeabd9c26b9bcc478 94 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 8 94 6.0E-40 T 15-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 NJ56_12205 e10e468a4a782b2eeabd9c26b9bcc478 94 SUPERFAMILY SSF50715 1 94 6.28E-30 T 15-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 NJ56_12205 e10e468a4a782b2eeabd9c26b9bcc478 94 Gene3D G3DSA:2.40.240.10 1 94 6.2E-33 T 15-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 NJ56_12205 e10e468a4a782b2eeabd9c26b9bcc478 94 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 2 94 27.222 T 15-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 SUPERFAMILY SSF52518 316 503 1.64E-56 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 14 282 2.6E-117 T 15-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 619 45.537 T 15-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 618 1.2E-304 T 15-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 SMART SM00861 319 483 1.9E-64 T 15-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 ProSitePatterns PS00801 Transketolase signature 1. 36 55 - T 15-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 Gene3D G3DSA:3.40.50.920 494 619 5.0E-43 T 15-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 SUPERFAMILY SSF52922 491 618 9.55E-31 T 15-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 Pfam PF02779 Transketolase, pyrimidine binding domain 320 479 3.9E-37 T 15-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 15-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 Gene3D G3DSA:3.40.50.970 316 490 2.2E-65 T 15-10-2018 NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 SUPERFAMILY SSF52518 9 381 4.25E-77 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_01495 f949f09a3bd755d9fe152fc5e592ff03 619 Pfam PF02780 Transketolase, C-terminal domain 494 610 1.5E-25 T 15-10-2018 IPR033248 Transketolase, C-terminal domain NJ56_12630 20880a901f6df08b39a57379f17bcefc 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 1.8E-12 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_12630 20880a901f6df08b39a57379f17bcefc 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 1.8E-12 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_12630 20880a901f6df08b39a57379f17bcefc 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 1.8E-12 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_12630 20880a901f6df08b39a57379f17bcefc 209 SMART SM00448 2 115 5.2E-26 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_12630 20880a901f6df08b39a57379f17bcefc 209 Pfam PF00072 Response regulator receiver domain 4 116 1.5E-25 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_12630 20880a901f6df08b39a57379f17bcefc 209 Gene3D G3DSA:3.40.50.12740 2 206 9.2E-59 T 15-10-2018 NJ56_12630 20880a901f6df08b39a57379f17bcefc 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 200 7.0E-20 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_12630 20880a901f6df08b39a57379f17bcefc 209 SUPERFAMILY SSF46894 130 206 2.62E-21 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_12630 20880a901f6df08b39a57379f17bcefc 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_12630 20880a901f6df08b39a57379f17bcefc 209 SMART SM00421 143 200 8.4E-20 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_12630 20880a901f6df08b39a57379f17bcefc 209 SUPERFAMILY SSF52172 1 125 4.27E-30 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 Gene3D G3DSA:2.40.50.640 83 155 5.0E-30 T 15-10-2018 NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 SMART SM00955 189 517 2.9E-127 T 15-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 Pfam PF00575 S1 RNA binding domain 560 639 4.1E-10 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 SMART SM00357 23 79 2.5E-10 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 Pfam PF00773 RNB domain 189 516 8.9E-88 T 15-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 641 1.1E-220 T 15-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 Pfam PF08206 Ribonuclease B OB domain 24 80 5.9E-18 T 15-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 643 45.114 T 15-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 SUPERFAMILY SSF50249 170 555 5.43E-117 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 642 0.0 T 15-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 SUPERFAMILY SSF50249 8 80 6.12E-15 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 SUPERFAMILY SSF50249 84 171 2.06E-30 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 Gene3D G3DSA:2.40.50.140 558 644 1.3E-34 T 15-10-2018 NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 ProSitePatterns PS01175 Ribonuclease II family signature. 484 508 - T 15-10-2018 IPR022966 Ribonuclease II/R, conserved site NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 SUPERFAMILY SSF50249 560 642 7.71E-20 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_15175 851f2aa0ce072c9a1c53536e08ca2b66 644 Gene3D G3DSA:2.40.50.140 1 82 1.0E-29 T 15-10-2018 NJ56_11750 34cacec871911330d20f4b04146677d8 557 SUPERFAMILY SSF52518 364 552 1.02E-33 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_11750 34cacec871911330d20f4b04146677d8 557 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 418 536 1.4E-8 T 15-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NJ56_11750 34cacec871911330d20f4b04146677d8 557 Gene3D G3DSA:3.40.50.970 1 196 3.4E-59 T 15-10-2018 NJ56_11750 34cacec871911330d20f4b04146677d8 557 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 4 554 32.319 T 15-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 NJ56_11750 34cacec871911330d20f4b04146677d8 557 SUPERFAMILY SSF52467 219 357 9.4E-5 T 15-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily NJ56_11750 34cacec871911330d20f4b04146677d8 557 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 431 8.5E-139 T 15-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 NJ56_11750 34cacec871911330d20f4b04146677d8 557 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 10 169 1.8E-28 T 15-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 NJ56_11750 34cacec871911330d20f4b04146677d8 557 Gene3D G3DSA:3.40.50.970 353 557 6.3E-62 T 15-10-2018 NJ56_11750 34cacec871911330d20f4b04146677d8 557 PIRSF PIRSF004983 1 557 7.9E-179 T 15-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 NJ56_11750 34cacec871911330d20f4b04146677d8 557 Pfam PF16582 Middle domain of thiamine pyrophosphate 184 389 1.2E-84 T 15-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 NJ56_11750 34cacec871911330d20f4b04146677d8 557 Gene3D G3DSA:3.40.50.1220 212 337 2.3E-45 T 15-10-2018 NJ56_11750 34cacec871911330d20f4b04146677d8 557 SUPERFAMILY SSF52518 7 179 2.68E-31 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_17025 ca6402f7aabddb9af5ef68b52ca994ef 106 Gene3D G3DSA:3.30.1390.10 1 106 4.4E-47 T 15-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like NJ56_17025 ca6402f7aabddb9af5ef68b52ca994ef 106 SUPERFAMILY SSF54736 22 105 4.18E-33 T 15-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like NJ56_17025 ca6402f7aabddb9af5ef68b52ca994ef 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 102 5.4E-34 T 15-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 NJ56_17025 ca6402f7aabddb9af5ef68b52ca994ef 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 21 101 28.33 T 15-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS NJ56_02320 4b4a74dfc962f2e1fbebd1cccc394485 107 Gene3D G3DSA:1.20.5.400 21 63 9.0E-14 T 15-10-2018 NJ56_02320 4b4a74dfc962f2e1fbebd1cccc394485 107 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 35.268 T 15-10-2018 IPR023081 Cell division protein FtsB NJ56_02320 4b4a74dfc962f2e1fbebd1cccc394485 107 Pfam PF04977 Septum formation initiator 11 89 3.5E-28 T 15-10-2018 IPR007060 Septum formation initiator FtsL/DivIC NJ56_14800 6215dc157e9818486999cc64f8fca489 218 PRINTS PR01837 MgtC/SapB protein signature 31 49 5.3E-47 T 15-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 NJ56_14800 6215dc157e9818486999cc64f8fca489 218 PRINTS PR01837 MgtC/SapB protein signature 65 87 5.3E-47 T 15-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 NJ56_14800 6215dc157e9818486999cc64f8fca489 218 PRINTS PR01837 MgtC/SapB protein signature 92 116 5.3E-47 T 15-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 NJ56_14800 6215dc157e9818486999cc64f8fca489 218 PRINTS PR01837 MgtC/SapB protein signature 12 31 5.3E-47 T 15-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 NJ56_14800 6215dc157e9818486999cc64f8fca489 218 Pfam PF02308 MgtC family 9 138 1.4E-39 T 15-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 NJ56_17450 b70f903ce1c0a09f38d3e8adfab73404 174 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 47 55 - T 15-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 NJ56_17450 b70f903ce1c0a09f38d3e8adfab73404 174 SUPERFAMILY SSF56925 28 174 1.83E-28 T 15-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel NJ56_17450 b70f903ce1c0a09f38d3e8adfab73404 174 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 87 110 2.0E-35 T 15-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 NJ56_17450 b70f903ce1c0a09f38d3e8adfab73404 174 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 135 156 2.0E-35 T 15-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 NJ56_17450 b70f903ce1c0a09f38d3e8adfab73404 174 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 162 173 2.0E-35 T 15-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 NJ56_17450 b70f903ce1c0a09f38d3e8adfab73404 174 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 46 58 2.0E-35 T 15-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 NJ56_17450 b70f903ce1c0a09f38d3e8adfab73404 174 Pfam PF06316 Enterobacterial Ail/Lom protein 1 174 3.3E-21 T 15-10-2018 NJ56_17450 b70f903ce1c0a09f38d3e8adfab73404 174 Gene3D G3DSA:2.40.160.20 25 174 7.1E-49 T 15-10-2018 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 Gene3D G3DSA:1.10.340.30 21 132 1.0E-77 T 15-10-2018 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 Pfam PF00633 Helix-hairpin-helix motif 99 127 1.5E-7 T 15-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 8.6E-20 T 15-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 TIGRFAM TIGR01083 nth: endonuclease III 3 194 1.9E-89 T 15-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 Gene3D G3DSA:1.10.1670.10 11 203 1.0E-77 T 15-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.1E-4 T 15-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 SUPERFAMILY SSF48150 2 207 5.97E-72 T 15-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 15-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 PIRSF PIRSF001435 1 210 5.5E-51 T 15-10-2018 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.034 T 15-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 15-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 SMART SM00478 38 185 1.2E-53 T 15-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 NJ56_15170 cd336788794ba2edd6d1ae6a6b30b492 213 SMART SM00525 186 206 4.4E-5 T 15-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 Hamap MF_00504 Peptidase B [pepB]. 4 428 67.533 T 15-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 SUPERFAMILY SSF53187 108 428 3.45E-102 T 15-10-2018 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 PIRSF PIRSF036388 2 431 4.1E-235 T 15-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 Gene3D G3DSA:3.40.630.10 92 431 4.1E-105 T 15-10-2018 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 Pfam PF12404 Peptidase 6 82 7.2E-35 T 15-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 276 283 - T 15-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 110 422 1.3E-102 T 15-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 PRINTS PR00481 Cytosol aminopeptidase signature 191 208 6.6E-47 T 15-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 PRINTS PR00481 Cytosol aminopeptidase signature 213 234 6.6E-47 T 15-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 PRINTS PR00481 Cytosol aminopeptidase signature 300 315 6.6E-47 T 15-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 PRINTS PR00481 Cytosol aminopeptidase signature 250 271 6.6E-47 T 15-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NJ56_10570 2a33b5d26feabbe0e578b986a65d0f80 431 PRINTS PR00481 Cytosol aminopeptidase signature 272 292 6.6E-47 T 15-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NJ56_06360 2d41a46406b3f087afb17a29ebd09efa 454 Gene3D G3DSA:1.20.120.430 122 454 5.2E-103 T 15-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 NJ56_06360 2d41a46406b3f087afb17a29ebd09efa 454 Pfam PF01926 50S ribosome-binding GTPase 218 308 2.2E-24 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_06360 2d41a46406b3f087afb17a29ebd09efa 454 SUPERFAMILY SSF116878 121 454 2.62E-51 T 15-10-2018 NJ56_06360 2d41a46406b3f087afb17a29ebd09efa 454 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 454 5.8E-100 T 15-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 NJ56_06360 2d41a46406b3f087afb17a29ebd09efa 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 370 5.1E-22 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_06360 2d41a46406b3f087afb17a29ebd09efa 454 SUPERFAMILY SSF52540 72 372 9.56E-45 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06360 2d41a46406b3f087afb17a29ebd09efa 454 Gene3D G3DSA:3.30.1360.120 1 121 8.8E-38 T 15-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 NJ56_06360 2d41a46406b3f087afb17a29ebd09efa 454 Gene3D G3DSA:3.40.50.300 217 382 5.2E-103 T 15-10-2018 NJ56_06360 2d41a46406b3f087afb17a29ebd09efa 454 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 454 33.134 T 15-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 NJ56_06360 2d41a46406b3f087afb17a29ebd09efa 454 Pfam PF12631 MnmE helical domain 123 451 3.5E-60 T 15-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 NJ56_06360 2d41a46406b3f087afb17a29ebd09efa 454 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 2.5E-34 T 15-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 NJ56_17455 ba26452ca05efd6f2760b8a66cf3c0cd 295 Pfam PF00892 EamA-like transporter family 150 279 2.8E-14 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_17455 ba26452ca05efd6f2760b8a66cf3c0cd 295 SUPERFAMILY SSF103481 187 282 1.83E-10 T 15-10-2018 NJ56_05870 ff2648cbcd23b66aed7618bb02d04c86 321 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 78 313 3.9E-68 T 15-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 NJ56_05870 ff2648cbcd23b66aed7618bb02d04c86 321 Gene3D G3DSA:3.40.50.2000 164 321 8.5E-54 T 15-10-2018 NJ56_05870 ff2648cbcd23b66aed7618bb02d04c86 321 Gene3D G3DSA:3.40.50.2000 1 163 3.5E-61 T 15-10-2018 NJ56_05870 ff2648cbcd23b66aed7618bb02d04c86 321 SUPERFAMILY SSF53756 1 318 1.88E-74 T 15-10-2018 NJ56_05870 ff2648cbcd23b66aed7618bb02d04c86 321 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 3 319 5.3E-123 T 15-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 NJ56_12945 ab05e4819d9535ef721ade11ebb2306b 235 Pfam PF03963 Flagellar hook capping protein - N-terminal region 18 85 2.9E-22 T 15-10-2018 IPR005648 Flagellar hook capping protein NJ56_12945 ab05e4819d9535ef721ade11ebb2306b 235 Gene3D G3DSA:2.60.40.4070 110 201 1.4E-30 T 15-10-2018 NJ56_12945 ab05e4819d9535ef721ade11ebb2306b 235 Gene3D G3DSA:2.30.30.910 94 229 1.4E-30 T 15-10-2018 NJ56_12945 ab05e4819d9535ef721ade11ebb2306b 235 Pfam PF13861 FlgD Tudor-like domain 93 232 6.0E-15 T 15-10-2018 IPR025963 FlgD Tudor-like domain NJ56_12945 ab05e4819d9535ef721ade11ebb2306b 235 Pfam PF13860 FlgD Ig-like domain 121 191 2.6E-19 T 15-10-2018 IPR025965 FlgD Ig-like domain NJ56_00280 94efb89f5caac9e64fe9df83eedce626 430 Pfam PF04052 TolB amino-terminal domain 23 122 6.4E-33 T 15-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 NJ56_00280 94efb89f5caac9e64fe9df83eedce626 430 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 14 427 1.9E-158 T 15-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 NJ56_00280 94efb89f5caac9e64fe9df83eedce626 430 Gene3D G3DSA:2.120.10.30 165 430 4.6E-113 T 15-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like NJ56_00280 94efb89f5caac9e64fe9df83eedce626 430 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 4 426 49.758 T 15-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 NJ56_00280 94efb89f5caac9e64fe9df83eedce626 430 SUPERFAMILY SSF69304 155 428 3.01E-55 T 15-10-2018 NJ56_00280 94efb89f5caac9e64fe9df83eedce626 430 Gene3D G3DSA:3.40.50.10070 19 164 1.7E-52 T 15-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 NJ56_00280 94efb89f5caac9e64fe9df83eedce626 430 Pfam PF07676 WD40-like Beta Propeller Repeat 237 272 1.5E-9 T 15-10-2018 IPR011659 WD40-like Beta Propeller NJ56_00280 94efb89f5caac9e64fe9df83eedce626 430 Pfam PF07676 WD40-like Beta Propeller Repeat 369 398 0.0042 T 15-10-2018 IPR011659 WD40-like Beta Propeller NJ56_00280 94efb89f5caac9e64fe9df83eedce626 430 Pfam PF07676 WD40-like Beta Propeller Repeat 199 223 2.8E-4 T 15-10-2018 IPR011659 WD40-like Beta Propeller NJ56_00280 94efb89f5caac9e64fe9df83eedce626 430 Pfam PF07676 WD40-like Beta Propeller Repeat 282 315 9.3E-10 T 15-10-2018 IPR011659 WD40-like Beta Propeller NJ56_00280 94efb89f5caac9e64fe9df83eedce626 430 SUPERFAMILY SSF52964 28 161 2.48E-40 T 15-10-2018 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 Pfam PF08264 Anticodon-binding domain of tRNA 681 832 4.9E-43 T 15-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 Gene3D G3DSA:3.40.50.620 349 562 6.6E-71 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 SUPERFAMILY SSF50677 198 372 1.23E-56 T 15-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 893 951 8.6E-17 T 15-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 SUPERFAMILY SSF52374 8 648 3.13E-136 T 15-10-2018 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 TIGRFAM TIGR00422 valS: valine--tRNA ligase 9 937 0.0 T 15-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 Hamap MF_02004 Valine--tRNA ligase [valS]. 8 956 16.162 T 15-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 SUPERFAMILY SSF46589 891 954 3.24E-15 T 15-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 PRINTS PR00986 Valyl-tRNA synthetase signature 507 525 2.0E-35 T 15-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 PRINTS PR00986 Valyl-tRNA synthetase signature 42 53 2.0E-35 T 15-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 PRINTS PR00986 Valyl-tRNA synthetase signature 376 389 2.0E-35 T 15-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 PRINTS PR00986 Valyl-tRNA synthetase signature 476 497 2.0E-35 T 15-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 PRINTS PR00986 Valyl-tRNA synthetase signature 243 260 2.0E-35 T 15-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 SUPERFAMILY SSF47323 649 906 1.55E-71 T 15-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 Gene3D G3DSA:3.90.740.10 212 248 2.2E-5 T 15-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 Gene3D G3DSA:3.90.740.10 249 348 6.0E-12 T 15-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 Gene3D G3DSA:3.40.50.620 10 208 1.2E-63 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 Gene3D G3DSA:1.10.730.10 582 824 4.8E-72 T 15-10-2018 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 21 638 2.7E-230 T 15-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 49 60 - T 15-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 NJ56_03615 c693c0d297f02d9c51e8f86ba5d7f55a 958 Gene3D G3DSA:1.10.287.380 884 955 1.2E-18 T 15-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 Gene3D G3DSA:3.20.20.60 400 741 9.1E-100 T 15-10-2018 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 Pfam PF01590 GAF domain 18 152 2.1E-15 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 SUPERFAMILY SSF52009 293 413 1.23E-25 T 15-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 SMART SM00065 17 164 3.4E-27 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 Gene3D G3DSA:3.50.30.10 175 399 1.3E-55 T 15-10-2018 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 Pfam PF05524 PEP-utilising enzyme, N-terminal 174 294 1.4E-23 T 15-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 175 730 2.4E-129 T 15-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 419 707 5.4E-101 T 15-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 SUPERFAMILY SSF55781 2 159 2.84E-30 T 15-10-2018 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 SUPERFAMILY SSF51621 420 715 3.93E-93 T 15-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 351 362 - T 15-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 Pfam PF00391 PEP-utilising enzyme, mobile domain 320 391 4.8E-16 T 15-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 613 631 - T 15-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 478 7.6E-25 T 15-10-2018 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 630 645 7.6E-25 T 15-10-2018 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 666 678 7.6E-25 T 15-10-2018 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 613 628 7.6E-25 T 15-10-2018 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 SUPERFAMILY SSF47831 203 309 5.49E-26 T 15-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 Gene3D G3DSA:1.10.274.10 190 313 1.3E-55 T 15-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 NJ56_09505 f6eeba5d0737e0e63c4c2330a2edd2fc 748 Gene3D G3DSA:3.30.450.40 1 163 2.6E-44 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_16260 1f1a5749aa56069167dc2d1cbc8a7372 278 Pfam PF08021 Siderophore-interacting FAD-binding domain 21 136 2.9E-36 T 15-10-2018 IPR013113 FAD-binding 9, siderophore-interacting NJ56_16260 1f1a5749aa56069167dc2d1cbc8a7372 278 Pfam PF04954 Siderophore-interacting protein 143 259 3.0E-32 T 15-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain NJ56_16260 1f1a5749aa56069167dc2d1cbc8a7372 278 Gene3D G3DSA:2.40.30.10 8 136 4.2E-34 T 15-10-2018 NJ56_16260 1f1a5749aa56069167dc2d1cbc8a7372 278 Gene3D G3DSA:3.40.50.80 140 277 1.9E-35 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_16260 1f1a5749aa56069167dc2d1cbc8a7372 278 SUPERFAMILY SSF63380 11 141 1.92E-12 T 15-10-2018 IPR017938 Riboflavin synthase-like beta-barrel NJ56_09025 28969740f3d12134d7b26fae106e2a6d 182 Pfam PF03608 PTS system enzyme II sorbitol-specific factor 5 171 2.2E-75 T 15-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 NJ56_09025 28969740f3d12134d7b26fae106e2a6d 182 PIRSF PIRSF038321 2 182 9.3E-88 T 15-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 NJ56_09025 28969740f3d12134d7b26fae106e2a6d 182 TIGRFAM TIGR00821 EII-GUT: PTS system, glucitol/sorbitol-specific, IIC component 1 181 2.8E-110 T 15-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 NJ56_07735 b89d048ca263ac3030bc0f2b47ec0daf 2123 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 1922 1966 7.1E-6 T 15-10-2018 IPR007577 Glycosyltransferase, DXD sugar-binding motif NJ56_07735 b89d048ca263ac3030bc0f2b47ec0daf 2123 Gene3D G3DSA:3.90.550.20 1811 2102 9.1E-129 T 15-10-2018 NJ56_07735 b89d048ca263ac3030bc0f2b47ec0daf 2123 SUPERFAMILY SSF53448 1755 2111 1.16E-59 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_06105 2f796cbc22487f1255f0e95e14c2f721 328 Gene3D G3DSA:1.20.1270.170 149 307 9.0E-122 T 15-10-2018 NJ56_06105 2f796cbc22487f1255f0e95e14c2f721 328 Hamap MF_01497 Stress response kinase A [srkA]. 4 318 45.871 T 15-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 NJ56_06105 2f796cbc22487f1255f0e95e14c2f721 328 Pfam PF01636 Phosphotransferase enzyme family 33 253 2.7E-43 T 15-10-2018 IPR002575 Aminoglycoside phosphotransferase NJ56_06105 2f796cbc22487f1255f0e95e14c2f721 328 Gene3D G3DSA:3.30.200.70 13 108 9.0E-122 T 15-10-2018 NJ56_06105 2f796cbc22487f1255f0e95e14c2f721 328 Gene3D G3DSA:1.10.510.10 60 258 9.0E-122 T 15-10-2018 NJ56_06105 2f796cbc22487f1255f0e95e14c2f721 328 SUPERFAMILY SSF56112 6 327 1.9E-88 T 15-10-2018 IPR011009 Protein kinase-like domain superfamily NJ56_04715 20fa5fa2e01a2a546441913d9b8c132a 167 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 149 2.0E-56 T 15-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 NJ56_04715 20fa5fa2e01a2a546441913d9b8c132a 167 Gene3D G3DSA:1.20.120.1370 1 153 7.2E-55 T 15-10-2018 IPR038309 Rsd/AlgQ superfamily NJ56_04715 20fa5fa2e01a2a546441913d9b8c132a 167 Hamap MF_01181 Regulator of sigma D [rsd]. 1 153 39.987 T 15-10-2018 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd NJ56_04715 20fa5fa2e01a2a546441913d9b8c132a 167 PIRSF PIRSF016548 1 161 1.0E-52 T 15-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 NJ56_17040 e74ca0682fbf995efe27b5450a42fbaf 371 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 39 364 5.4E-56 T 15-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 NJ56_17040 e74ca0682fbf995efe27b5450a42fbaf 371 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 50 295 6.2E-20 T 15-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NJ56_17040 e74ca0682fbf995efe27b5450a42fbaf 371 Gene3D G3DSA:2.40.30.170 50 302 2.2E-85 T 15-10-2018 NJ56_17040 e74ca0682fbf995efe27b5450a42fbaf 371 Gene3D G3DSA:1.10.287.470 95 186 2.2E-85 T 15-10-2018 NJ56_17040 e74ca0682fbf995efe27b5450a42fbaf 371 Gene3D G3DSA:2.40.50.100 61 223 2.2E-85 T 15-10-2018 NJ56_17040 e74ca0682fbf995efe27b5450a42fbaf 371 Gene3D G3DSA:2.40.420.20 46 362 2.2E-85 T 15-10-2018 NJ56_17040 e74ca0682fbf995efe27b5450a42fbaf 371 SUPERFAMILY SSF111369 53 299 1.96E-29 T 15-10-2018 NJ56_00700 5caf1c7716c913cd56c94dde578971f3 220 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 75 128 5.0E-22 T 15-10-2018 NJ56_00700 5caf1c7716c913cd56c94dde578971f3 220 PIRSF PIRSF016262 1 209 7.2E-57 T 15-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 NJ56_00700 5caf1c7716c913cd56c94dde578971f3 220 Gene3D G3DSA:3.30.930.10 2 204 2.9E-62 T 15-10-2018 NJ56_00700 5caf1c7716c913cd56c94dde578971f3 220 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 71 86 - T 15-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 NJ56_00700 5caf1c7716c913cd56c94dde578971f3 220 Pfam PF03099 Biotin/lipoate A/B protein ligase family 62 159 1.2E-5 T 15-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 NJ56_00700 5caf1c7716c913cd56c94dde578971f3 220 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 27 203 1.8E-73 T 15-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 NJ56_00700 5caf1c7716c913cd56c94dde578971f3 220 Hamap MF_00013 Octanoyltransferase [lipB]. 5 206 37.521 T 15-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 NJ56_00700 5caf1c7716c913cd56c94dde578971f3 220 SUPERFAMILY SSF55681 4 205 4.06E-71 T 15-10-2018 NJ56_10895 d3d2253ffeaefd9ba4e58570ff9844c0 349 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 9 344 39.116 T 15-10-2018 IPR014524 Outer membrane protein assembly factor BamC NJ56_10895 d3d2253ffeaefd9ba4e58570ff9844c0 349 Gene3D G3DSA:3.30.310.170 227 349 5.5E-52 T 15-10-2018 NJ56_10895 d3d2253ffeaefd9ba4e58570ff9844c0 349 Pfam PF06804 NlpB/DapX lipoprotein 40 343 6.8E-112 T 15-10-2018 IPR010653 NlpB/DapX lipoprotein NJ56_10895 d3d2253ffeaefd9ba4e58570ff9844c0 349 Gene3D G3DSA:3.30.530.50 101 213 1.5E-43 T 15-10-2018 NJ56_10895 d3d2253ffeaefd9ba4e58570ff9844c0 349 PIRSF PIRSF026343 9 346 1.5E-118 T 15-10-2018 IPR014524 Outer membrane protein assembly factor BamC NJ56_00085 264857fbb9962d9b2cd5ed4c772108d6 246 SMART SM00382 26 203 9.9E-15 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_00085 264857fbb9962d9b2cd5ed4c772108d6 246 Gene3D G3DSA:3.40.50.300 1 244 2.9E-57 T 15-10-2018 NJ56_00085 264857fbb9962d9b2cd5ed4c772108d6 246 SUPERFAMILY SSF52540 2 219 1.51E-51 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00085 264857fbb9962d9b2cd5ed4c772108d6 246 Pfam PF00005 ABC transporter 18 152 4.3E-26 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_00085 264857fbb9962d9b2cd5ed4c772108d6 246 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_02560 9f0570cf9a020bf3ba12007c4012c989 264 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 264 176.3 T 15-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 NJ56_02560 9f0570cf9a020bf3ba12007c4012c989 264 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 3 261 2.2E-147 T 15-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 NJ56_02560 9f0570cf9a020bf3ba12007c4012c989 264 SUPERFAMILY SSF56276 43 174 7.85E-23 T 15-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 NJ56_02560 9f0570cf9a020bf3ba12007c4012c989 264 Pfam PF02675 S-adenosylmethionine decarboxylase 33 169 4.4E-29 T 15-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 NJ56_02560 9f0570cf9a020bf3ba12007c4012c989 264 Gene3D G3DSA:3.60.90.10 93 185 1.5E-6 T 15-10-2018 NJ56_02560 9f0570cf9a020bf3ba12007c4012c989 264 PIRSF PIRSF001356 1 263 2.3E-155 T 15-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 181 196 - T 15-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 348 430 2.1E-26 T 15-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 Gene3D G3DSA:1.20.1440.230 343 443 4.9E-28 T 15-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 SUPERFAMILY SSF142019 20 252 2.48E-85 T 15-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 Gene3D G3DSA:3.10.20.600 248 342 5.6E-28 T 15-10-2018 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 SUPERFAMILY SSF140490 343 435 1.83E-31 T 15-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 358 369 - T 15-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 61 233 3.2E-50 T 15-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 Gene3D G3DSA:3.40.50.11540 66 245 2.0E-78 T 15-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 SMART SM00928 345 390 4.3E-22 T 15-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 SUPERFAMILY SSF142984 257 339 1.1E-21 T 15-10-2018 NJ56_11690 5f8da73b310b1317c82d868ce73c0d9d 455 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 20 432 1.9E-200 T 15-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_01355 411429e5fea0a9269b63f1ab4e2a03f2 132 Gene3D G3DSA:1.10.150.280 60 131 2.2E-18 T 15-10-2018 NJ56_01355 411429e5fea0a9269b63f1ab4e2a03f2 132 Pfam PF12836 Helix-hairpin-helix motif 68 130 3.0E-19 T 15-10-2018 NJ56_01355 411429e5fea0a9269b63f1ab4e2a03f2 132 SUPERFAMILY SSF47781 59 130 7.34E-23 T 15-10-2018 IPR010994 RuvA domain 2-like NJ56_01355 411429e5fea0a9269b63f1ab4e2a03f2 132 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 68 131 1.3E-24 T 15-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain NJ56_09460 6432149045d228369528d4d899ef67f2 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 69 86 5.6E-26 T 15-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_09460 6432149045d228369528d4d899ef67f2 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 293 311 5.6E-26 T 15-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_09460 6432149045d228369528d4d899ef67f2 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 386 408 5.6E-26 T 15-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_09460 6432149045d228369528d4d899ef67f2 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 157 166 5.6E-26 T 15-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_09460 6432149045d228369528d4d899ef67f2 420 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 216 229 - T 15-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site NJ56_09460 6432149045d228369528d4d899ef67f2 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 265 284 8.0E-20 T 15-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 NJ56_09460 6432149045d228369528d4d899ef67f2 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 376 389 8.0E-20 T 15-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 NJ56_09460 6432149045d228369528d4d899ef67f2 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 51 69 8.0E-20 T 15-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 NJ56_09460 6432149045d228369528d4d899ef67f2 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 71 83 8.0E-20 T 15-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 NJ56_09460 6432149045d228369528d4d899ef67f2 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 195 8.0E-20 T 15-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 NJ56_09460 6432149045d228369528d4d899ef67f2 420 Gene3D G3DSA:2.40.37.10 22 416 8.9E-143 T 15-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 NJ56_09460 6432149045d228369528d4d899ef67f2 420 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 419 38.09 T 15-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_09460 6432149045d228369528d4d899ef67f2 420 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 48 275 1.7E-57 T 15-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 NJ56_09460 6432149045d228369528d4d899ef67f2 420 Gene3D G3DSA:3.20.20.10 33 279 8.9E-143 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_09460 6432149045d228369528d4d899ef67f2 420 SUPERFAMILY SSF50621 251 419 1.53E-56 T 15-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 NJ56_09460 6432149045d228369528d4d899ef67f2 420 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 9 418 1.4E-129 T 15-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 NJ56_09460 6432149045d228369528d4d899ef67f2 420 SUPERFAMILY SSF51419 25 277 3.79E-55 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_09460 6432149045d228369528d4d899ef67f2 420 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 51 69 - T 15-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site NJ56_09460 6432149045d228369528d4d899ef67f2 420 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 276 376 1.3E-23 T 15-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 NJ56_03120 bbe488716eb31e1e4a768df597eb35b7 325 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 98 316 7.2E-88 T 15-10-2018 NJ56_03120 bbe488716eb31e1e4a768df597eb35b7 325 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 113 283 6.2E-24 T 15-10-2018 NJ56_03120 bbe488716eb31e1e4a768df597eb35b7 325 Gene3D G3DSA:3.30.70.2020 38 320 2.9E-117 T 15-10-2018 NJ56_03120 bbe488716eb31e1e4a768df597eb35b7 325 Pfam PF12710 haloacid dehalogenase-like hydrolase 148 281 9.7E-15 T 15-10-2018 NJ56_03120 bbe488716eb31e1e4a768df597eb35b7 325 Gene3D G3DSA:3.40.50.1000 107 316 2.9E-117 T 15-10-2018 IPR023214 HAD superfamily NJ56_03120 bbe488716eb31e1e4a768df597eb35b7 325 SUPERFAMILY SSF56784 111 316 7.6E-48 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_03120 bbe488716eb31e1e4a768df597eb35b7 325 Gene3D G3DSA:1.10.150.210 121 183 2.9E-117 T 15-10-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 NJ56_14435 32000b48ba50e7479f6b453304cefc96 1023 Pfam PF02913 FAD linked oxidases, C-terminal domain 281 539 3.4E-60 T 15-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 NJ56_14435 32000b48ba50e7479f6b453304cefc96 1023 Gene3D G3DSA:3.30.465.40 30 205 5.0E-43 T 15-10-2018 NJ56_14435 32000b48ba50e7479f6b453304cefc96 1023 SUPERFAMILY SSF55103 257 543 1.57E-51 T 15-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 NJ56_14435 32000b48ba50e7479f6b453304cefc96 1023 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 674 685 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_14435 32000b48ba50e7479f6b453304cefc96 1023 SUPERFAMILY SSF56176 19 282 3.88E-52 T 15-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 NJ56_14435 32000b48ba50e7479f6b453304cefc96 1023 Pfam PF13183 4Fe-4S dicluster domain 577 688 3.2E-12 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_14435 32000b48ba50e7479f6b453304cefc96 1023 SUPERFAMILY SSF46548 518 692 1.07E-7 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_14435 32000b48ba50e7479f6b453304cefc96 1023 Pfam PF01565 FAD binding domain 52 192 4.7E-35 T 15-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 32 42 - T 15-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 Gene3D G3DSA:2.40.37.10 216 351 1.2E-109 T 15-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 Hamap MF_01201 Alanine racemase. 2 356 32.156 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 SMART SM01005 232 356 1.6E-59 T 15-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 SUPERFAMILY SSF51419 10 233 1.96E-61 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 Pfam PF01168 Alanine racemase, N-terminal domain 10 217 1.6E-64 T 15-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 Gene3D G3DSA:3.20.20.10 11 215 1.2E-109 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 TIGRFAM TIGR00492 alr: alanine racemase 5 353 1.0E-116 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 Pfam PF00842 Alanine racemase, C-terminal domain 233 353 1.7E-38 T 15-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 SUPERFAMILY SSF50621 227 354 2.23E-42 T 15-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 PRINTS PR00992 Alanine racemase signature 61 79 1.3E-70 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 PRINTS PR00992 Alanine racemase signature 286 303 1.3E-70 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 PRINTS PR00992 Alanine racemase signature 27 43 1.3E-70 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 PRINTS PR00992 Alanine racemase signature 155 166 1.3E-70 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 PRINTS PR00992 Alanine racemase signature 338 351 1.3E-70 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 PRINTS PR00992 Alanine racemase signature 190 217 1.3E-70 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 PRINTS PR00992 Alanine racemase signature 121 133 1.3E-70 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 PRINTS PR00992 Alanine racemase signature 265 280 1.3E-70 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_15680 6d4421dedfe59f4514425b2bbbaffa83 357 PRINTS PR00992 Alanine racemase signature 248 263 1.3E-70 T 15-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_00095 7cf3bb0f98190afe62030bd62e55b6c5 332 SUPERFAMILY SSF53807 6 314 1.1E-43 T 15-10-2018 NJ56_00095 7cf3bb0f98190afe62030bd62e55b6c5 332 Gene3D G3DSA:3.40.50.1980 1 323 7.9E-74 T 15-10-2018 NJ56_00095 7cf3bb0f98190afe62030bd62e55b6c5 332 Pfam PF01497 Periplasmic binding protein 66 255 5.5E-19 T 15-10-2018 IPR002491 ABC transporter periplasmic binding domain NJ56_05245 b2b48c6cd0f027f88aa6da545ca81d7c 181 Gene3D G3DSA:1.10.357.10 10 148 2.4E-13 T 15-10-2018 NJ56_05245 b2b48c6cd0f027f88aa6da545ca81d7c 181 SUPERFAMILY SSF46689 11 51 5.82E-7 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_05245 b2b48c6cd0f027f88aa6da545ca81d7c 181 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 40 2.7E-5 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 SUPERFAMILY SSF51735 4 243 5.6E-82 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 15-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.9E-46 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 4.9E-46 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 4.9E-46 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 4.9E-46 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 4.9E-46 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.9E-46 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 3.7E-12 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 3.7E-12 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.7E-12 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 Gene3D G3DSA:3.40.50.720 1 248 1.5E-82 T 15-10-2018 NJ56_13190 642d430bb94bcbcfe3139c17ab6539e3 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 242 1.0E-70 T 15-10-2018 NJ56_02800 cb4db2ec1261988af49d857f7f797251 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.3E-7 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_02800 cb4db2ec1261988af49d857f7f797251 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 63 74 4.3E-7 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_02800 cb4db2ec1261988af49d857f7f797251 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 53 63 4.3E-7 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_02800 cb4db2ec1261988af49d857f7f797251 318 SUPERFAMILY SSF46785 22 101 4.08E-20 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_02800 cb4db2ec1261988af49d857f7f797251 318 Gene3D G3DSA:1.10.10.10 17 105 2.2E-31 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_02800 cb4db2ec1261988af49d857f7f797251 318 Gene3D G3DSA:3.40.190.10 112 310 7.7E-37 T 15-10-2018 NJ56_02800 cb4db2ec1261988af49d857f7f797251 318 Gene3D G3DSA:3.40.190.10 189 286 7.7E-37 T 15-10-2018 NJ56_02800 cb4db2ec1261988af49d857f7f797251 318 SUPERFAMILY SSF53850 108 313 2.71E-37 T 15-10-2018 NJ56_02800 cb4db2ec1261988af49d857f7f797251 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 27 83 7.7E-18 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_02800 cb4db2ec1261988af49d857f7f797251 318 Pfam PF03466 LysR substrate binding domain 119 311 5.4E-19 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_00390 a64465ca3fd580cad20da4e7f0620900 243 Pfam PF06149 Protein of unknown function (DUF969) 7 224 2.1E-88 T 15-10-2018 IPR010374 Protein of unknown function DUF969 NJ56_02120 58976ac69f980d2ba96f5adecbe04194 96 SUPERFAMILY SSF47336 33 88 1.96E-9 T 15-10-2018 IPR036736 ACP-like superfamily NJ56_02120 58976ac69f980d2ba96f5adecbe04194 96 Pfam PF00550 Phosphopantetheine attachment site 39 87 1.1E-4 T 15-10-2018 IPR009081 Phosphopantetheine binding ACP domain NJ56_02120 58976ac69f980d2ba96f5adecbe04194 96 Gene3D G3DSA:1.10.1200.10 14 94 3.3E-10 T 15-10-2018 IPR036736 ACP-like superfamily NJ56_16350 513a2d4102e831ecdebbabf83788acbf 216 PRINTS PR01549 Autoinducer synthesis protein signature 141 162 4.9E-61 T 15-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 NJ56_16350 513a2d4102e831ecdebbabf83788acbf 216 PRINTS PR01549 Autoinducer synthesis protein signature 62 80 4.9E-61 T 15-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 NJ56_16350 513a2d4102e831ecdebbabf83788acbf 216 PRINTS PR01549 Autoinducer synthesis protein signature 119 140 4.9E-61 T 15-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 NJ56_16350 513a2d4102e831ecdebbabf83788acbf 216 PRINTS PR01549 Autoinducer synthesis protein signature 39 61 4.9E-61 T 15-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 NJ56_16350 513a2d4102e831ecdebbabf83788acbf 216 PRINTS PR01549 Autoinducer synthesis protein signature 94 106 4.9E-61 T 15-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 NJ56_16350 513a2d4102e831ecdebbabf83788acbf 216 PRINTS PR01549 Autoinducer synthesis protein signature 163 180 4.9E-61 T 15-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 NJ56_16350 513a2d4102e831ecdebbabf83788acbf 216 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 4.9E-61 T 15-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 NJ56_16350 513a2d4102e831ecdebbabf83788acbf 216 SUPERFAMILY SSF55729 1 210 1.03E-44 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_16350 513a2d4102e831ecdebbabf83788acbf 216 Pfam PF00765 Autoinducer synthase 11 185 2.2E-66 T 15-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 NJ56_16350 513a2d4102e831ecdebbabf83788acbf 216 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 48 - T 15-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 NJ56_16350 513a2d4102e831ecdebbabf83788acbf 216 Gene3D G3DSA:3.40.630.30 1 211 7.2E-53 T 15-10-2018 NJ56_15290 60b580f0e854aac613eff5455091c523 206 SUPERFAMILY SSF55821 1 203 6.71E-65 T 15-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily NJ56_15290 60b580f0e854aac613eff5455091c523 206 Gene3D G3DSA:3.90.870.10 1 206 3.1E-69 T 15-10-2018 NJ56_15290 60b580f0e854aac613eff5455091c523 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 201 4.4E-73 T 15-10-2018 IPR006070 YrdC-like domain GO:0003725 NJ56_15290 60b580f0e854aac613eff5455091c523 206 Pfam PF01300 Telomere recombination 23 198 9.9E-47 T 15-10-2018 IPR006070 YrdC-like domain GO:0003725 NJ56_07445 0c43ed8feaec60004e202de1466ec5a1 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 3.9E-44 T 15-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07445 0c43ed8feaec60004e202de1466ec5a1 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 26.292 T 15-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07445 0c43ed8feaec60004e202de1466ec5a1 117 SUPERFAMILY SSF53137 3 115 1.29E-53 T 15-10-2018 NJ56_07445 0c43ed8feaec60004e202de1466ec5a1 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 6.2E-46 T 15-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07445 0c43ed8feaec60004e202de1466ec5a1 117 Gene3D G3DSA:3.30.420.100 1 117 1.2E-46 T 15-10-2018 NJ56_12655 43a27f2d6d89b2d167e6395712c7a955 299 Gene3D G3DSA:3.20.20.60 2 296 3.7E-89 T 15-10-2018 NJ56_12655 43a27f2d6d89b2d167e6395712c7a955 299 SUPERFAMILY SSF51621 9 241 1.4E-60 T 15-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 NJ56_12655 43a27f2d6d89b2d167e6395712c7a955 299 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 12 231 3.7E-79 T 15-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 NJ56_12655 43a27f2d6d89b2d167e6395712c7a955 299 PIRSF PIRSF015582 2 299 3.0E-76 T 15-10-2018 IPR011206 Citrate lyase beta subunit-like NJ56_10725 235e37a97a21c8dfb35a805ef160ab68 239 SMART SM00862 155 231 3.4E-25 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_10725 235e37a97a21c8dfb35a805ef160ab68 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 230 2.5E-23 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_10725 235e37a97a21c8dfb35a805ef160ab68 239 SMART SM00448 12 122 2.5E-39 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_10725 235e37a97a21c8dfb35a805ef160ab68 239 Gene3D G3DSA:1.10.10.10 141 238 3.7E-34 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_10725 235e37a97a21c8dfb35a805ef160ab68 239 SUPERFAMILY SSF52172 14 189 3.81E-39 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_10725 235e37a97a21c8dfb35a805ef160ab68 239 Gene3D G3DSA:3.40.50.2300 7 134 2.5E-34 T 15-10-2018 NJ56_10725 235e37a97a21c8dfb35a805ef160ab68 239 Pfam PF00072 Response regulator receiver domain 14 122 3.8E-25 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_07455 93ef86ff92c0af51f1c7fae807ce2bc7 59 SUPERFAMILY SSF55129 3 59 2.22E-21 T 15-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily NJ56_07455 93ef86ff92c0af51f1c7fae807ce2bc7 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 1.9E-19 T 15-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain NJ56_07455 93ef86ff92c0af51f1c7fae807ce2bc7 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 15-10-2018 IPR018038 Ribosomal protein L30, conserved site NJ56_07455 93ef86ff92c0af51f1c7fae807ce2bc7 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 3.3E-26 T 15-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07455 93ef86ff92c0af51f1c7fae807ce2bc7 59 Gene3D G3DSA:3.30.1390.20 1 59 8.1E-27 T 15-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily NJ56_07455 93ef86ff92c0af51f1c7fae807ce2bc7 59 PIRSF PIRSF002211 1 59 4.3E-28 T 15-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07455 93ef86ff92c0af51f1c7fae807ce2bc7 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 22.072 T 15-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_15975 fa104527c524609781ec0e092834fe7a 504 SUPERFAMILY SSF103473 24 199 8.5E-15 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_15975 fa104527c524609781ec0e092834fe7a 504 Gene3D G3DSA:1.20.1250.20 12 488 2.9E-87 T 15-10-2018 NJ56_15975 fa104527c524609781ec0e092834fe7a 504 Pfam PF00854 POT family 90 445 9.4E-26 T 15-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 NJ56_15975 fa104527c524609781ec0e092834fe7a 504 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 19 488 3.1E-63 T 15-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 NJ56_15975 fa104527c524609781ec0e092834fe7a 504 SUPERFAMILY SSF103473 221 490 1.18E-11 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_14685 7d72bf35dbbc19216e3367d00addeb35 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 311 1.1E-43 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_14685 7d72bf35dbbc19216e3367d00addeb35 321 SUPERFAMILY SSF161098 69 300 5.89E-23 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_08600 045f7c6cf413cfc8d416f5df08bca719 422 Gene3D G3DSA:3.50.50.60 207 315 9.4E-6 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_08600 045f7c6cf413cfc8d416f5df08bca719 422 SUPERFAMILY SSF51905 1 416 1.68E-50 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_08600 045f7c6cf413cfc8d416f5df08bca719 422 Gene3D G3DSA:3.50.50.60 1 114 3.8E-15 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_08600 045f7c6cf413cfc8d416f5df08bca719 422 Pfam PF01593 Flavin containing amine oxidoreductase 10 298 3.3E-16 T 15-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 NJ56_10390 ce628ad808e3d9d8885d1f53f6b9cd12 280 SUPERFAMILY SSF53697 102 277 3.76E-38 T 15-10-2018 NJ56_10390 ce628ad808e3d9d8885d1f53f6b9cd12 280 Pfam PF01380 SIS domain 126 255 1.8E-26 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_10390 ce628ad808e3d9d8885d1f53f6b9cd12 280 Gene3D G3DSA:1.10.10.10 1 80 2.1E-21 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_10390 ce628ad808e3d9d8885d1f53f6b9cd12 280 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 2.4E-24 T 15-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 NJ56_10390 ce628ad808e3d9d8885d1f53f6b9cd12 280 Gene3D G3DSA:3.40.50.10490 96 280 1.5E-43 T 15-10-2018 NJ56_10390 ce628ad808e3d9d8885d1f53f6b9cd12 280 SUPERFAMILY SSF46689 1 76 3.94E-18 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 Pfam PF03610 PTS system fructose IIA component 4 119 2.6E-24 T 15-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 Pfam PF00391 PEP-utilising enzyme, mobile domain 398 471 3.0E-13 T 15-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 Gene3D G3DSA:3.30.1340.10 153 240 1.2E-20 T 15-10-2018 IPR035895 HPr-like superfamily NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 SUPERFAMILY SSF52009 373 475 5.1E-21 T 15-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 PRINTS PR00107 Phosphocarrier protein signature 205 222 2.1E-8 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 PRINTS PR00107 Phosphocarrier protein signature 190 205 2.1E-8 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 PRINTS PR00107 Phosphocarrier protein signature 165 181 2.1E-8 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 Gene3D G3DSA:3.50.30.10 251 474 1.4E-49 T 15-10-2018 NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 SUPERFAMILY SSF53062 1 127 2.49E-32 T 15-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 SUPERFAMILY SSF55594 155 239 6.02E-20 T 15-10-2018 IPR035895 HPr-like superfamily NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 Pfam PF05524 PEP-utilising enzyme, N-terminal 251 373 1.1E-20 T 15-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 156 232 2.8E-15 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 165 172 - T 15-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 Pfam PF00381 PTS HPr component phosphorylation site 157 234 1.5E-16 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 Gene3D G3DSA:3.40.50.510 1 131 2.6E-42 T 15-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 2 125 1.7E-36 T 15-10-2018 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 SUPERFAMILY SSF47831 275 390 8.63E-27 T 15-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 NJ56_03225 4fd649601bcda8a8a080460a1bdf43f4 477 Gene3D G3DSA:1.10.274.10 268 393 1.4E-49 T 15-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 NJ56_12315 f267a3704dfc699a88eecce4c7091ee8 382 SUPERFAMILY SSF48695 13 185 2.69E-49 T 15-10-2018 IPR036280 Multiheme cytochrome superfamily NJ56_12315 f267a3704dfc699a88eecce4c7091ee8 382 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 11 182 4.5E-67 T 15-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal NJ56_12315 f267a3704dfc699a88eecce4c7091ee8 382 Gene3D G3DSA:1.10.3820.10 6 188 2.6E-38 T 15-10-2018 IPR038266 NapC/NirT cytochrome c superfamily NJ56_12315 f267a3704dfc699a88eecce4c7091ee8 382 PIRSF PIRSF000014 2 382 4.7E-142 T 15-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 NJ56_05590 11053c692f766c3c05d33353cb10383e 282 Gene3D G3DSA:3.30.1150.10 113 277 7.4E-28 T 15-10-2018 NJ56_05590 11053c692f766c3c05d33353cb10383e 282 SUPERFAMILY SSF74653 177 276 6.15E-21 T 15-10-2018 NJ56_05590 11053c692f766c3c05d33353cb10383e 282 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 197 274 2.8E-12 T 15-10-2018 IPR037682 TonB, C-terminal GO:0055085 NJ56_05590 11053c692f766c3c05d33353cb10383e 282 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 197 275 1.9E-17 T 15-10-2018 IPR006260 TonB/TolA, C-terminal NJ56_10715 d243e79f3c513c1de094263fa67d90a2 454 Pfam PF16325 Peptidase family U32 C-terminal domain 359 440 3.4E-22 T 15-10-2018 IPR032525 Peptidase family U32, C-terminal NJ56_10715 d243e79f3c513c1de094263fa67d90a2 454 Gene3D G3DSA:2.40.30.10 355 441 2.5E-11 T 15-10-2018 NJ56_10715 d243e79f3c513c1de094263fa67d90a2 454 ProSitePatterns PS01276 Peptidase family U32 signature. 162 180 - T 15-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 NJ56_10715 d243e79f3c513c1de094263fa67d90a2 454 Pfam PF01136 Peptidase family U32 76 343 5.5E-95 T 15-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 NJ56_08325 415e898ce5d9fbde9572943a209d4081 117 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 3 116 1.8E-39 T 15-10-2018 IPR003509 Uncharacterised protein family UPF0102 NJ56_08325 415e898ce5d9fbde9572943a209d4081 117 SUPERFAMILY SSF52980 4 112 2.04E-21 T 15-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 NJ56_08325 415e898ce5d9fbde9572943a209d4081 117 Gene3D G3DSA:3.40.1350.10 9 117 2.5E-30 T 15-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 NJ56_08325 415e898ce5d9fbde9572943a209d4081 117 Pfam PF02021 Uncharacterised protein family UPF0102 10 102 3.3E-23 T 15-10-2018 IPR003509 Uncharacterised protein family UPF0102 NJ56_08325 415e898ce5d9fbde9572943a209d4081 117 Hamap MF_00048 UPF0102 protein YraN [yraN]. 3 115 22.865 T 15-10-2018 IPR003509 Uncharacterised protein family UPF0102 NJ56_08005 4e1651faf6e7ce55c8d5a387e26caed4 332 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 273 1.4E-116 T 15-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 NJ56_08005 4e1651faf6e7ce55c8d5a387e26caed4 332 Pfam PF04085 rod shape-determining protein MreC 123 269 1.3E-37 T 15-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 NJ56_08005 4e1651faf6e7ce55c8d5a387e26caed4 332 PIRSF PIRSF038471 2 282 3.4E-74 T 15-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 NJ56_08005 4e1651faf6e7ce55c8d5a387e26caed4 332 Gene3D G3DSA:2.40.10.350 180 257 4.5E-35 T 15-10-2018 NJ56_08005 4e1651faf6e7ce55c8d5a387e26caed4 332 Gene3D G3DSA:2.40.10.340 122 266 4.5E-35 T 15-10-2018 NJ56_07375 18a16aff01b7b616422dc04a7ddf289a 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.715 T 15-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 NJ56_07375 18a16aff01b7b616422dc04a7ddf289a 100 Gene3D G3DSA:3.30.70.330 1 100 5.8E-39 T 15-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily NJ56_07375 18a16aff01b7b616422dc04a7ddf289a 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 15-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07375 18a16aff01b7b616422dc04a7ddf289a 100 Pfam PF00276 Ribosomal protein L23 9 95 5.0E-32 T 15-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 NJ56_07375 18a16aff01b7b616422dc04a7ddf289a 100 SUPERFAMILY SSF54189 6 97 8.63E-31 T 15-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07405 307f6ef0b22f3c149690a3008ded8c27 63 SUPERFAMILY SSF46561 1 61 1.57E-21 T 15-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07405 307f6ef0b22f3c149690a3008ded8c27 63 Gene3D G3DSA:1.10.287.310 1 63 6.3E-29 T 15-10-2018 NJ56_07405 307f6ef0b22f3c149690a3008ded8c27 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.184 T 15-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07405 307f6ef0b22f3c149690a3008ded8c27 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 2.2E-21 T 15-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07405 307f6ef0b22f3c149690a3008ded8c27 63 Pfam PF00831 Ribosomal L29 protein 4 60 8.4E-22 T 15-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_10750 9d1431420a76fb27d3023634da830354 427 Pfam PF13437 HlyD family secretion protein 200 305 1.1E-4 T 15-10-2018 NJ56_10750 9d1431420a76fb27d3023634da830354 427 SUPERFAMILY SSF111369 81 320 9.94E-56 T 15-10-2018 NJ56_10750 9d1431420a76fb27d3023634da830354 427 Gene3D G3DSA:2.40.420.20 306 398 2.4E-21 T 15-10-2018 NJ56_10750 9d1431420a76fb27d3023634da830354 427 Gene3D G3DSA:1.10.287.470 123 196 1.5E-68 T 15-10-2018 NJ56_10750 9d1431420a76fb27d3023634da830354 427 Pfam PF13533 Biotin-lipoyl like 89 137 3.0E-15 T 15-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain NJ56_10750 9d1431420a76fb27d3023634da830354 427 Hamap MF_01422 Multidrug resistance protein MdtA [mdtA]. 4 417 52.823 T 15-10-2018 IPR022824 Multidrug resistance protein MdtA NJ56_10750 9d1431420a76fb27d3023634da830354 427 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 64 396 4.5E-76 T 15-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 NJ56_10750 9d1431420a76fb27d3023634da830354 427 Gene3D G3DSA:2.40.30.170 82 305 1.5E-68 T 15-10-2018 NJ56_10750 9d1431420a76fb27d3023634da830354 427 Gene3D G3DSA:2.40.50.100 88 232 1.5E-68 T 15-10-2018 NJ56_04710 09f80e19840b444bb688b72c3f88912b 258 SUPERFAMILY SSF55811 79 241 9.07E-40 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_04710 09f80e19840b444bb688b72c3f88912b 258 Gene3D G3DSA:3.90.79.20 2 125 5.0E-46 T 15-10-2018 NJ56_04710 09f80e19840b444bb688b72c3f88912b 258 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 93 124 1.0E-8 T 15-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 NJ56_04710 09f80e19840b444bb688b72c3f88912b 258 Hamap MF_00297 NADH pyrophosphatase [nudC]. 1 257 45.022 T 15-10-2018 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 NJ56_04710 09f80e19840b444bb688b72c3f88912b 258 Gene3D G3DSA:3.90.79.10 126 257 6.4E-40 T 15-10-2018 NJ56_04710 09f80e19840b444bb688b72c3f88912b 258 SUPERFAMILY SSF55811 2 96 4.87E-31 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_04710 09f80e19840b444bb688b72c3f88912b 258 ProSitePatterns PS00893 Nudix box signature. 159 180 - T 15-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NJ56_04710 09f80e19840b444bb688b72c3f88912b 258 Pfam PF00293 NUDIX domain 131 234 1.0E-17 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_04000 0128562c0441a9fe9e319173b2daeb1b 130 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 1.5E-37 T 15-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_04000 0128562c0441a9fe9e319173b2daeb1b 130 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 15-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 NJ56_04000 0128562c0441a9fe9e319173b2daeb1b 130 Pfam PF01250 Ribosomal protein S6 3 91 1.3E-27 T 15-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_04000 0128562c0441a9fe9e319173b2daeb1b 130 Gene3D G3DSA:3.30.70.60 1 92 6.4E-33 T 15-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 NJ56_04000 0128562c0441a9fe9e319173b2daeb1b 130 SUPERFAMILY SSF54995 1 103 1.7E-37 T 15-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_04000 0128562c0441a9fe9e319173b2daeb1b 130 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 22.04 T 15-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 Pfam PF14849 YidC periplasmic domain 61 342 2.4E-90 T 15-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 352 532 1.4E-69 T 15-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 Gene3D G3DSA:2.70.98.90 56 332 2.2E-109 T 15-10-2018 IPR038221 YidC, periplasmic domain superfamily NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 534 26.721 T 15-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 Pfam PF02096 60Kd inner membrane protein 353 532 2.1E-60 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 351 3.5E-119 T 15-10-2018 IPR028053 Membrane insertase YidC, N-terminal NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR01900 YidC translocation/secretion protein signature 467 482 1.3E-29 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR01900 YidC translocation/secretion protein signature 487 511 1.3E-29 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR01900 YidC translocation/secretion protein signature 338 354 1.3E-29 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR00701 60kDa inner membrane protein signature 414 437 1.8E-104 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR00701 60kDa inner membrane protein signature 461 483 1.8E-104 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR00701 60kDa inner membrane protein signature 498 521 1.8E-104 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR00701 60kDa inner membrane protein signature 250 265 1.8E-104 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR00701 60kDa inner membrane protein signature 2 23 1.8E-104 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR00701 60kDa inner membrane protein signature 323 343 1.8E-104 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR00701 60kDa inner membrane protein signature 158 178 1.8E-104 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR00701 60kDa inner membrane protein signature 217 235 1.8E-104 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_06365 9bb55ca1e02ead30de8a89b850945bc3 546 PRINTS PR00701 60kDa inner membrane protein signature 66 87 1.8E-104 T 15-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 NJ56_14880 886c3ea241fde7d2e6b52512813c7954 172 SUPERFAMILY SSF49329 23 172 6.28E-45 T 15-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 NJ56_14880 886c3ea241fde7d2e6b52512813c7954 172 Gene3D G3DSA:2.60.40.200 19 172 3.3E-49 T 15-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 NJ56_14880 886c3ea241fde7d2e6b52512813c7954 172 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 36 171 1.0E-28 T 15-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 NJ56_14880 886c3ea241fde7d2e6b52512813c7954 172 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 64 74 - T 15-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 NJ56_13630 675a6e7bb8324f36f7d2b4c67548bc20 467 Gene3D G3DSA:3.90.1150.160 361 467 3.0E-36 T 15-10-2018 NJ56_13630 675a6e7bb8324f36f7d2b4c67548bc20 467 SUPERFAMILY SSF53383 8 451 8.19E-129 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_13630 675a6e7bb8324f36f7d2b4c67548bc20 467 Gene3D G3DSA:3.40.640.10 67 359 3.5E-81 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_13630 675a6e7bb8324f36f7d2b4c67548bc20 467 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 270 291 - T 15-10-2018 IPR021115 Pyridoxal-phosphate binding site GO:0016831 NJ56_13630 675a6e7bb8324f36f7d2b4c67548bc20 467 TIGRFAM TIGR01788 Glu-decarb-GAD: glutamate decarboxylase 17 449 1.8E-204 T 15-10-2018 IPR010107 Glutamate decarboxylase GO:0004351|GO:0006536|GO:0030170 KEGG: 00250+4.1.1.15|KEGG: 00410+4.1.1.15|KEGG: 00430+4.1.1.15|KEGG: 00650+4.1.1.15|MetaCyc: PWY-4321 NJ56_13630 675a6e7bb8324f36f7d2b4c67548bc20 467 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 34 384 2.2E-109 T 15-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 NJ56_17460 17d82cdb11fc580805170d3f582475c6 258 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 2 257 41.761 T 15-10-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 NJ56_17460 17d82cdb11fc580805170d3f582475c6 258 Gene3D G3DSA:3.40.50.150 9 254 1.5E-84 T 15-10-2018 NJ56_17460 17d82cdb11fc580805170d3f582475c6 258 Gene3D G3DSA:1.10.150.290 132 238 1.5E-84 T 15-10-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 NJ56_17460 17d82cdb11fc580805170d3f582475c6 258 SUPERFAMILY SSF53335 7 209 5.02E-33 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_17460 17d82cdb11fc580805170d3f582475c6 258 Pfam PF13649 Methyltransferase domain 36 124 5.1E-14 T 15-10-2018 NJ56_01855 64e504d09e172fb7959f7c261e539e4a 325 Gene3D G3DSA:3.30.2350.10 85 316 9.4E-71 T 15-10-2018 NJ56_01855 64e504d09e172fb7959f7c261e539e4a 325 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 15-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_01855 64e504d09e172fb7959f7c261e539e4a 325 Pfam PF00849 RNA pseudouridylate synthase 92 242 3.4E-32 T 15-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_01855 64e504d09e172fb7959f7c261e539e4a 325 SMART SM00363 18 83 4.2E-10 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_01855 64e504d09e172fb7959f7c261e539e4a 325 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 14 312 3.7E-107 T 15-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_01855 64e504d09e172fb7959f7c261e539e4a 325 SUPERFAMILY SSF55174 17 69 7.57E-11 T 15-10-2018 NJ56_01855 64e504d09e172fb7959f7c261e539e4a 325 SUPERFAMILY SSF55120 77 320 3.7E-79 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_01855 64e504d09e172fb7959f7c261e539e4a 325 Pfam PF01479 S4 domain 18 65 1.1E-10 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_01855 64e504d09e172fb7959f7c261e539e4a 325 Gene3D G3DSA:3.10.290.10 2 76 2.4E-25 T 15-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 NJ56_08520 20a108fb1b0ad45d6a79c8d1143d8107 976 SMART SM00400 36 90 1.3E-19 T 15-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 NJ56_08520 20a108fb1b0ad45d6a79c8d1143d8107 976 SUPERFAMILY SSF57783 1 94 5.1E-27 T 15-10-2018 NJ56_08520 20a108fb1b0ad45d6a79c8d1143d8107 976 Pfam PF13155 Toprim-like 278 364 4.6E-13 T 15-10-2018 NJ56_08520 20a108fb1b0ad45d6a79c8d1143d8107 976 Gene3D G3DSA:3.90.980.10 122 257 1.7E-8 T 15-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily NJ56_08520 20a108fb1b0ad45d6a79c8d1143d8107 976 Pfam PF01807 CHC2 zinc finger 5 92 9.2E-25 T 15-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 NJ56_08520 20a108fb1b0ad45d6a79c8d1143d8107 976 Gene3D G3DSA:3.90.580.10 2 99 1.6E-28 T 15-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 NJ56_08520 20a108fb1b0ad45d6a79c8d1143d8107 976 Gene3D G3DSA:3.40.1360.10 266 379 9.2E-19 T 15-10-2018 NJ56_08520 20a108fb1b0ad45d6a79c8d1143d8107 976 SUPERFAMILY SSF56731 128 371 4.05E-26 T 15-10-2018 NJ56_16850 767d058bb150963e6812c1842567f9ec 242 Gene3D G3DSA:1.10.10.2250 1 78 4.0E-39 T 15-10-2018 NJ56_16850 767d058bb150963e6812c1842567f9ec 242 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 10 240 51.039 T 15-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 NJ56_16850 767d058bb150963e6812c1842567f9ec 242 Pfam PF04288 MukE-like family 10 227 1.2E-125 T 15-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 NJ56_16850 767d058bb150963e6812c1842567f9ec 242 Gene3D G3DSA:1.10.10.2260 88 195 2.9E-53 T 15-10-2018 NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 5.4E-9 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 132 5.4E-9 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 163 5.4E-9 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 131 159 - T 15-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 Gene3D G3DSA:3.40.50.720 1 247 6.2E-70 T 15-10-2018 NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 TIGRFAM TIGR04316 dhbA_paeA: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 8 246 2.3E-106 T 15-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 198 217 2.5E-56 T 15-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 74 91 2.5E-56 T 15-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 94 114 2.5E-56 T 15-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 159 182 2.5E-56 T 15-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 224 243 2.5E-56 T 15-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 12 29 2.5E-56 T 15-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 2.8E-52 T 15-10-2018 NJ56_08960 f343c77374a96d96ae580afaa505fa6a 248 SUPERFAMILY SSF51735 6 246 4.23E-69 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_14950 782f8f487dc79255a235bdb1c6ed0aa9 355 Gene3D G3DSA:3.60.15.10 3 355 1.3E-107 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_14950 782f8f487dc79255a235bdb1c6ed0aa9 355 SUPERFAMILY SSF56281 35 288 7.0E-26 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_14950 782f8f487dc79255a235bdb1c6ed0aa9 355 Pfam PF13483 Beta-lactamase superfamily domain 42 282 1.3E-12 T 15-10-2018 NJ56_11990 674ebdd66c1f711c25346ca15e48ccbe 125 Gene3D G3DSA:3.30.1330.70 1 124 9.5E-42 T 15-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 NJ56_11990 674ebdd66c1f711c25346ca15e48ccbe 125 PIRSF PIRSF001007 1 125 1.2E-39 T 15-10-2018 IPR016281 Crossover junction endodeoxyribonuclease, RusA GO:0008821 NJ56_11990 674ebdd66c1f711c25346ca15e48ccbe 125 Pfam PF05866 Endodeoxyribonuclease RusA 6 118 1.8E-17 T 15-10-2018 IPR008822 Holliday junction resolvase RusA-like GO:0000287|GO:0006281|GO:0006310 NJ56_11990 674ebdd66c1f711c25346ca15e48ccbe 125 SUPERFAMILY SSF103084 3 120 6.93E-26 T 15-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 NJ56_09050 8737c433391ae9e053879ce57732ef8f 358 Pfam PF11873 Domain of unknown function (DUF3393) 3 190 2.3E-77 T 15-10-2018 IPR024570 Murein transglycosylase-C, N-terminal NJ56_09050 8737c433391ae9e053879ce57732ef8f 358 Hamap MF_01616 Membrane-bound lytic murein transglycosylase C [mltC]. 1 357 60.565 T 15-10-2018 IPR023664 Murein transglycosylase-C GO:0009279|GO:0016798|GO:0016998 NJ56_09050 8737c433391ae9e053879ce57732ef8f 358 Gene3D G3DSA:1.10.530.10 178 354 5.6E-50 T 15-10-2018 NJ56_09050 8737c433391ae9e053879ce57732ef8f 358 Pfam PF01464 Transglycosylase SLT domain 195 318 2.5E-33 T 15-10-2018 IPR008258 Transglycosylase SLT domain 1 NJ56_09050 8737c433391ae9e053879ce57732ef8f 358 SUPERFAMILY SSF53955 155 356 4.79E-37 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_09050 8737c433391ae9e053879ce57732ef8f 358 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 212 240 - T 15-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 NJ56_05940 47a401ea661ccc57079f79e85060af96 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 4.2E-43 T 15-10-2018 IPR013527 YicC-like, N-terminal NJ56_05940 47a401ea661ccc57079f79e85060af96 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 2.7E-34 T 15-10-2018 IPR013551 Domain of unknown function DUF1732 NJ56_05940 47a401ea661ccc57079f79e85060af96 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 2.3E-130 T 15-10-2018 IPR005229 Conserved hypothetical protein CHP00255 NJ56_03820 450702ff43c3d5d0a1ad5222301874d3 277 Gene3D G3DSA:3.20.20.20 1 276 2.4E-111 T 15-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_03820 450702ff43c3d5d0a1ad5222301874d3 277 Pfam PF00809 Pterin binding enzyme 18 257 8.2E-86 T 15-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_03820 450702ff43c3d5d0a1ad5222301874d3 277 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 15-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_03820 450702ff43c3d5d0a1ad5222301874d3 277 SUPERFAMILY SSF51717 6 274 2.09E-105 T 15-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_03820 450702ff43c3d5d0a1ad5222301874d3 277 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 16 271 6.5E-101 T 15-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 NJ56_03820 450702ff43c3d5d0a1ad5222301874d3 277 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 15-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 NJ56_06040 1bd46d3f4001aef913e203710c79844d 294 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 18 276 2.9E-93 T 15-10-2018 IPR017039 Virulence factor BrkB NJ56_06040 1bd46d3f4001aef913e203710c79844d 294 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 17 286 23.248 T 15-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial NJ56_06040 1bd46d3f4001aef913e203710c79844d 294 PIRSF PIRSF035875 2 294 1.6E-61 T 15-10-2018 IPR017039 Virulence factor BrkB NJ56_06040 1bd46d3f4001aef913e203710c79844d 294 Pfam PF03631 Virulence factor BrkB 29 276 8.2E-55 T 15-10-2018 IPR017039 Virulence factor BrkB NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 Gene3D G3DSA:3.40.50.300 11 279 1.8E-66 T 15-10-2018 NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 Pfam PF00005 ABC transporter 19 185 4.7E-24 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 SMART SM00382 344 515 3.3E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 SMART SM00382 28 230 4.3E-15 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 Pfam PF00005 ABC transporter 336 469 9.4E-25 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 SUPERFAMILY SSF52540 310 501 1.42E-44 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 Pfam PF16326 ABC transporter C-terminal domain 563 631 1.0E-20 T 15-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 Pfam PF12848 ABC transporter 224 296 2.4E-9 T 15-10-2018 IPR032781 ABC-transporter extension domain NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 Gene3D G3DSA:3.40.50.300 282 549 3.2E-63 T 15-10-2018 NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 Gene3D G3DSA:1.10.287.380 554 636 7.8E-30 T 15-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 NJ56_16780 5dabba36bb9ae64b40f373a869dcc2c0 636 SUPERFAMILY SSF52540 4 244 1.03E-48 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 Pfam PF00535 Glycosyl transferase family 2 281 449 4.9E-33 T 15-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 Gene3D G3DSA:3.90.550.10 265 486 8.0E-80 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 Gene3D G3DSA:2.40.10.220 693 802 7.0E-13 T 15-10-2018 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 TIGRFAM TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming) 150 832 5.0E-290 T 15-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 Pfam PF07238 PilZ domain 697 793 5.2E-10 T 15-10-2018 IPR009875 PilZ domain GO:0035438 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 Pfam PF03552 Cellulose synthase 454 574 1.8E-12 T 15-10-2018 IPR005150 Cellulose synthase GO:0016020|GO:0016760|GO:0030244 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 SUPERFAMILY SSF141371 699 785 2.75E-6 T 15-10-2018 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 SUPERFAMILY SSF53448 275 554 3.94E-51 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 PRINTS PR01439 Cellulose synthase subunit A signature 366 390 4.0E-58 T 15-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 PRINTS PR01439 Cellulose synthase subunit A signature 202 222 4.0E-58 T 15-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 PRINTS PR01439 Cellulose synthase subunit A signature 527 553 4.0E-58 T 15-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 PRINTS PR01439 Cellulose synthase subunit A signature 285 304 4.0E-58 T 15-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 PRINTS PR01439 Cellulose synthase subunit A signature 230 255 4.0E-58 T 15-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 PRINTS PR01439 Cellulose synthase subunit A signature 670 691 4.0E-58 T 15-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 PRINTS PR01439 Cellulose synthase subunit A signature 556 575 4.0E-58 T 15-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 NJ56_06725 c17e84d26f77238d7eb3701eece37911 875 PRINTS PR01439 Cellulose synthase subunit A signature 596 615 4.0E-58 T 15-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 NJ56_02080 bcae829cab3365473292fbef74e20849 399 SUPERFAMILY SSF53067 157 238 1.81E-17 T 15-10-2018 NJ56_02080 bcae829cab3365473292fbef74e20849 399 Pfam PF05134 Type II secretion system (T2SS), protein L 16 240 6.0E-47 T 15-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain NJ56_02080 bcae829cab3365473292fbef74e20849 399 TIGRFAM TIGR01709 typeII_sec_gspL: type II secretion system protein L 16 359 2.5E-52 T 15-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 NJ56_02080 bcae829cab3365473292fbef74e20849 399 Pfam PF12693 GspL periplasmic domain 250 358 2.0E-7 T 15-10-2018 IPR025691 GspL periplasmic domain NJ56_02080 bcae829cab3365473292fbef74e20849 399 SUPERFAMILY SSF53067 14 153 7.9E-32 T 15-10-2018 NJ56_02080 bcae829cab3365473292fbef74e20849 399 Gene3D G3DSA:3.30.420.380 16 238 4.5E-64 T 15-10-2018 NJ56_02080 bcae829cab3365473292fbef74e20849 399 Gene3D G3DSA:3.30.420.370 151 216 4.5E-64 T 15-10-2018 NJ56_02080 bcae829cab3365473292fbef74e20849 399 PIRSF PIRSF015761 11 394 6.0E-27 T 15-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 NJ56_06100 81944720f9c63da100bfc7d9b59aa6d3 207 PIRSF PIRSF001488 1 207 3.9E-86 T 15-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL NJ56_06100 81944720f9c63da100bfc7d9b59aa6d3 207 SUPERFAMILY SSF52833 20 204 3.03E-45 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_06100 81944720f9c63da100bfc7d9b59aa6d3 207 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 15-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 NJ56_06100 81944720f9c63da100bfc7d9b59aa6d3 207 Pfam PF01323 DSBA-like thioredoxin domain 40 187 6.3E-28 T 15-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 NJ56_06100 81944720f9c63da100bfc7d9b59aa6d3 207 Gene3D G3DSA:3.40.30.10 25 207 3.5E-54 T 15-10-2018 NJ56_06720 7d2c570383ccbc29bc42192e77beb897 245 TIGRFAM TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ 1 240 1.1E-81 T 15-10-2018 IPR017746 Cellulose synthase operon protein BcsQ NJ56_06720 7d2c570383ccbc29bc42192e77beb897 245 SUPERFAMILY SSF52540 1 236 2.13E-25 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06720 7d2c570383ccbc29bc42192e77beb897 245 Gene3D G3DSA:3.40.50.300 2 239 1.1E-29 T 15-10-2018 NJ56_06720 7d2c570383ccbc29bc42192e77beb897 245 Pfam PF06564 Cellulose biosynthesis protein BcsQ 1 237 1.2E-103 T 15-10-2018 IPR017746 Cellulose synthase operon protein BcsQ NJ56_07550 671ff4e8625205d099d5ceae416ec629 189 SUPERFAMILY SSF55821 8 185 2.81E-53 T 15-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily NJ56_07550 671ff4e8625205d099d5ceae416ec629 189 Pfam PF01300 Telomere recombination 14 179 1.2E-40 T 15-10-2018 IPR006070 YrdC-like domain GO:0003725 NJ56_07550 671ff4e8625205d099d5ceae416ec629 189 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 6 187 40.719 T 15-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 NJ56_07550 671ff4e8625205d099d5ceae416ec629 189 Gene3D G3DSA:3.90.870.10 3 187 8.6E-61 T 15-10-2018 NJ56_03075 3c1dd87813852e6cdbb47f4eccfba35e 172 Hamap MF_00648 Non-canonical purine NTP phosphatase. 2 171 27.864 T 15-10-2018 IPR002786 Non-canonical purine NTP phosphatase NJ56_03075 3c1dd87813852e6cdbb47f4eccfba35e 172 Gene3D G3DSA:3.90.950.10 1 172 9.2E-59 T 15-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like NJ56_03075 3c1dd87813852e6cdbb47f4eccfba35e 172 Pfam PF01931 Protein of unknown function DUF84 7 165 3.1E-49 T 15-10-2018 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 NJ56_03075 3c1dd87813852e6cdbb47f4eccfba35e 172 TIGRFAM TIGR00258 TIGR00258: inosine/xanthosine triphosphatase 7 169 1.2E-47 T 15-10-2018 IPR002786 Non-canonical purine NTP phosphatase NJ56_03075 3c1dd87813852e6cdbb47f4eccfba35e 172 SUPERFAMILY SSF52972 1 169 1.0E-53 T 15-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like NJ56_00300 0d984d1611b4725e0098f1e5ad3213d4 133 PIRSF PIRSF003230 1 133 7.3E-47 T 15-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 NJ56_00300 0d984d1611b4725e0098f1e5ad3213d4 133 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 125 6.3E-42 T 15-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 NJ56_00300 0d984d1611b4725e0098f1e5ad3213d4 133 SUPERFAMILY SSF54637 4 132 3.96E-38 T 15-10-2018 IPR029069 HotDog domain superfamily NJ56_00300 0d984d1611b4725e0098f1e5ad3213d4 133 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 11 28 - T 15-10-2018 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 NJ56_00300 0d984d1611b4725e0098f1e5ad3213d4 133 Gene3D G3DSA:3.10.129.10 1 133 1.7E-40 T 15-10-2018 NJ56_00300 0d984d1611b4725e0098f1e5ad3213d4 133 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 6 130 2.2E-50 T 15-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 NJ56_00300 0d984d1611b4725e0098f1e5ad3213d4 133 Pfam PF03061 Thioesterase superfamily 20 103 3.0E-17 T 15-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 SUPERFAMILY SSF51735 2 169 1.81E-50 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 171 - T 15-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 98 111 4.0E-45 T 15-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 4.0E-45 T 15-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 192 204 4.0E-45 T 15-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 77 93 4.0E-45 T 15-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 4.0E-45 T 15-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 4.0E-45 T 15-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 166 177 4.0E-45 T 15-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 SUPERFAMILY SSF56327 172 435 2.81E-95 T 15-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 Gene3D G3DSA:3.40.50.720 1 169 9.3E-61 T 15-10-2018 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 Gene3D G3DSA:3.90.110.10 170 435 4.7E-104 T 15-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 196 410 3.0E-54 T 15-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 NJ56_07180 9a1ed11d8fb54e5be1da2bb82f95dda5 435 Pfam PF02056 Family 4 glycosyl hydrolase 5 185 3.1E-55 T 15-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 SUPERFAMILY SSF55909 10 422 1.7E-130 T 15-10-2018 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 TIGRFAM TIGR01078 arcA: arginine deiminase 13 422 3.7E-151 T 15-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 Hamap MF_00242 Arginine deiminase [arcA]. 8 422 46.43 T 15-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 PIRSF PIRSF006356 1 422 5.3E-139 T 15-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 Gene3D G3DSA:1.10.3930.10 75 161 3.1E-147 T 15-10-2018 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 PRINTS PR01466 Bacterial arginine deiminase signature 190 205 1.0E-47 T 15-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 PRINTS PR01466 Bacterial arginine deiminase signature 162 180 1.0E-47 T 15-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 PRINTS PR01466 Bacterial arginine deiminase signature 401 419 1.0E-47 T 15-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 PRINTS PR01466 Bacterial arginine deiminase signature 9 29 1.0E-47 T 15-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 PRINTS PR01466 Bacterial arginine deiminase signature 358 375 1.0E-47 T 15-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 PRINTS PR01466 Bacterial arginine deiminase signature 378 392 1.0E-47 T 15-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 Pfam PF02274 Amidinotransferase 25 419 2.8E-110 T 15-10-2018 NJ56_13645 aaa1e8872da17f73b438190cd2671733 424 Gene3D G3DSA:3.75.10.10 13 419 3.1E-147 T 15-10-2018 NJ56_14145 88cf1813d7222c1b669db52c3312adb4 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 7.7E-7 T 15-10-2018 NJ56_14145 88cf1813d7222c1b669db52c3312adb4 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 7.7E-7 T 15-10-2018 NJ56_14145 88cf1813d7222c1b669db52c3312adb4 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 7.7E-7 T 15-10-2018 NJ56_14145 88cf1813d7222c1b669db52c3312adb4 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 305 329 7.7E-7 T 15-10-2018 NJ56_14145 88cf1813d7222c1b669db52c3312adb4 461 SUPERFAMILY SSF103473 6 450 3.14E-64 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_14145 88cf1813d7222c1b669db52c3312adb4 461 Gene3D G3DSA:1.20.1720.10 17 248 1.3E-43 T 15-10-2018 NJ56_14145 88cf1813d7222c1b669db52c3312adb4 461 Gene3D G3DSA:1.20.1250.20 262 456 7.5E-22 T 15-10-2018 NJ56_14145 88cf1813d7222c1b669db52c3312adb4 461 Pfam PF07690 Major Facilitator Superfamily 21 412 2.1E-46 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_01600 8ac416ae2f7cdcdd8175ca40f728e555 411 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 283 378 1.4E-23 T 15-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain NJ56_01600 8ac416ae2f7cdcdd8175ca40f728e555 411 Gene3D G3DSA:3.60.21.10 1 281 3.7E-88 T 15-10-2018 IPR029052 Metallo-dependent phosphatase-like NJ56_01600 8ac416ae2f7cdcdd8175ca40f728e555 411 Pfam PF00149 Calcineurin-like phosphoesterase 1 94 8.0E-13 T 15-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 NJ56_01600 8ac416ae2f7cdcdd8175ca40f728e555 411 SUPERFAMILY SSF56300 1 340 7.97E-56 T 15-10-2018 NJ56_01600 8ac416ae2f7cdcdd8175ca40f728e555 411 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 259 1.9E-75 T 15-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 NJ56_01600 8ac416ae2f7cdcdd8175ca40f728e555 411 Gene3D G3DSA:3.30.160.720 283 345 1.8E-25 T 15-10-2018 NJ56_10705 f02ee27a1e1bef3e782617eb4ecee5da 152 SUPERFAMILY SSF89872 28 152 2.09E-46 T 15-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily NJ56_10705 f02ee27a1e1bef3e782617eb4ecee5da 152 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 35 150 2.5E-47 T 15-10-2018 NJ56_10705 f02ee27a1e1bef3e782617eb4ecee5da 152 PIRSF PIRSF009103 3 152 1.1E-55 T 15-10-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 NJ56_10705 f02ee27a1e1bef3e782617eb4ecee5da 152 Gene3D G3DSA:3.40.1420.10 24 152 5.0E-46 T 15-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 2.6E-14 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 1.0E-58 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 SUPERFAMILY SSF50447 205 301 3.53E-30 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 SUPERFAMILY SSF50465 298 393 4.89E-35 T 15-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 3.7E-24 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.7E-24 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.7E-24 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 3.7E-24 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 3.7E-24 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 Gene3D G3DSA:2.40.30.10 206 334 1.4E-53 T 15-10-2018 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 Gene3D G3DSA:2.40.30.10 338 393 7.3E-28 T 15-10-2018 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 2.7E-238 T 15-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 SUPERFAMILY SSF52540 6 219 4.53E-61 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 61.259 T 15-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 7.7E-17 T 15-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 Gene3D G3DSA:3.40.50.300 1 203 3.8E-71 T 15-10-2018 NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.3E-32 T 15-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal NJ56_04795 1e289da03d5d0a27d9510da3d03ab703 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 15-10-2018 IPR031157 Tr-type G domain, conserved site NJ56_08515 a7c7ae9152505722cbbe46c008deb61e 112 Gene3D G3DSA:1.10.260.40 3 103 4.5E-17 T 15-10-2018 NJ56_08515 a7c7ae9152505722cbbe46c008deb61e 112 SMART SM00530 6 61 3.1E-14 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_08515 a7c7ae9152505722cbbe46c008deb61e 112 SUPERFAMILY SSF47413 1 69 5.09E-16 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_08515 a7c7ae9152505722cbbe46c008deb61e 112 Pfam PF01381 Helix-turn-helix 8 61 1.8E-13 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_08525 a7c7ae9152505722cbbe46c008deb61e 112 Gene3D G3DSA:1.10.260.40 3 103 4.5E-17 T 15-10-2018 NJ56_08525 a7c7ae9152505722cbbe46c008deb61e 112 SMART SM00530 6 61 3.1E-14 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_08525 a7c7ae9152505722cbbe46c008deb61e 112 SUPERFAMILY SSF47413 1 69 5.09E-16 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_08525 a7c7ae9152505722cbbe46c008deb61e 112 Pfam PF01381 Helix-turn-helix 8 61 1.8E-13 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_08480 a7c7ae9152505722cbbe46c008deb61e 112 Gene3D G3DSA:1.10.260.40 3 103 4.5E-17 T 15-10-2018 NJ56_08480 a7c7ae9152505722cbbe46c008deb61e 112 SMART SM00530 6 61 3.1E-14 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_08480 a7c7ae9152505722cbbe46c008deb61e 112 SUPERFAMILY SSF47413 1 69 5.09E-16 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_08480 a7c7ae9152505722cbbe46c008deb61e 112 Pfam PF01381 Helix-turn-helix 8 61 1.8E-13 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_10810 fb9aeb3da6c758d8cf32367463359b48 729 SUPERFAMILY SSF69322 159 369 1.09E-8 T 15-10-2018 NJ56_10810 fb9aeb3da6c758d8cf32367463359b48 729 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 523 716 9.6E-13 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_10810 fb9aeb3da6c758d8cf32367463359b48 729 Gene3D G3DSA:2.130.10.10 165 375 3.0E-5 T 15-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 NJ56_10810 fb9aeb3da6c758d8cf32367463359b48 729 SUPERFAMILY SSF161098 490 712 2.88E-21 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_10810 fb9aeb3da6c758d8cf32367463359b48 729 Gene3D G3DSA:1.10.3720.10 489 722 7.5E-22 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_10810 fb9aeb3da6c758d8cf32367463359b48 729 SUPERFAMILY SSF161098 417 500 3.53E-6 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_14330 5ea94e998cc841a7709fc87124184409 384 SUPERFAMILY SSF53383 4 376 7.05E-112 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_14330 5ea94e998cc841a7709fc87124184409 384 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 373 4.7E-127 T 15-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NJ56_14330 5ea94e998cc841a7709fc87124184409 384 Hamap MF_01167 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [arnB]. 1 379 70.421 T 15-10-2018 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB GO:0008483 KEGG: 00520+2.6.1.87 NJ56_14330 5ea94e998cc841a7709fc87124184409 384 Gene3D G3DSA:3.90.1150.10 253 382 7.8E-39 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_14330 5ea94e998cc841a7709fc87124184409 384 PIRSF PIRSF000390 1 381 1.9E-110 T 15-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NJ56_14330 5ea94e998cc841a7709fc87124184409 384 Gene3D G3DSA:3.40.640.10 1 252 1.8E-93 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_15725 e5f1d2601993a3349b0d5ff33fee9596 218 Gene3D G3DSA:3.90.850.10 1 218 1.1E-75 T 15-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 NJ56_15725 e5f1d2601993a3349b0d5ff33fee9596 218 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 18 205 7.3E-53 T 15-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 NJ56_15725 e5f1d2601993a3349b0d5ff33fee9596 218 SUPERFAMILY SSF56529 11 210 1.7E-68 T 15-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 NJ56_01610 27f1bdb150a24ae04916c0552c8655dc 302 SUPERFAMILY SSF53067 2 300 2.43E-60 T 15-10-2018 NJ56_01610 27f1bdb150a24ae04916c0552c8655dc 302 Pfam PF00480 ROK family 3 301 3.1E-86 T 15-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 NJ56_01610 27f1bdb150a24ae04916c0552c8655dc 302 ProSitePatterns PS01125 ROK family signature. 130 157 - T 15-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 NJ56_01610 27f1bdb150a24ae04916c0552c8655dc 302 Gene3D G3DSA:3.30.420.40 4 296 2.1E-79 T 15-10-2018 NJ56_01610 27f1bdb150a24ae04916c0552c8655dc 302 Gene3D G3DSA:3.30.420.40 119 289 2.1E-79 T 15-10-2018 NJ56_00120 f1f5373615419dfc0be821c96e6b269b 225 SUPERFAMILY SSF52540 3 211 2.04E-65 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00120 f1f5373615419dfc0be821c96e6b269b 225 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 176 1.0E-62 T 15-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 NJ56_00120 f1f5373615419dfc0be821c96e6b269b 225 Gene3D G3DSA:3.40.50.300 2 224 7.0E-72 T 15-10-2018 NJ56_00120 f1f5373615419dfc0be821c96e6b269b 225 PIRSF PIRSF006755 1 224 7.6E-83 T 15-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 NJ56_00120 f1f5373615419dfc0be821c96e6b269b 225 Pfam PF13500 AAA domain 5 211 3.4E-38 T 15-10-2018 NJ56_00120 f1f5373615419dfc0be821c96e6b269b 225 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 211 29.75 T 15-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 NJ56_06570 c59ac443a93246ab45e57d8578c1e0e6 211 SUPERFAMILY SSF81342 4 209 4.16E-55 T 15-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 NJ56_06570 c59ac443a93246ab45e57d8578c1e0e6 211 Pfam PF01292 Prokaryotic cytochrome b561 9 184 2.1E-22 T 15-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 NJ56_06570 c59ac443a93246ab45e57d8578c1e0e6 211 Gene3D G3DSA:1.20.950.20 1 211 1.4E-72 T 15-10-2018 NJ56_06570 c59ac443a93246ab45e57d8578c1e0e6 211 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 7 205 6.7E-68 T 15-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 NJ56_05195 9346f6d26456b5902f8a82a49fb47b6e 345 SUPERFAMILY SSF53474 18 331 3.59E-36 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_05195 9346f6d26456b5902f8a82a49fb47b6e 345 Pfam PF12146 Serine aminopeptidase, S33 54 314 1.2E-55 T 15-10-2018 IPR022742 Serine aminopeptidase, S33 NJ56_05195 9346f6d26456b5902f8a82a49fb47b6e 345 Gene3D G3DSA:3.40.50.1820 27 335 2.4E-45 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_09425 f558110a0236501e5782a844322955b6 155 SUPERFAMILY SSF103054 80 147 8.5E-5 T 15-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily NJ56_09425 f558110a0236501e5782a844322955b6 155 Gene3D G3DSA:3.30.1360.100 78 154 2.5E-5 T 15-10-2018 NJ56_16925 02f025141d7bca7663b0e2c42e00a0f7 229 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 34.137 T 15-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 NJ56_16925 02f025141d7bca7663b0e2c42e00a0f7 229 Pfam PF02224 Cytidylate kinase 8 221 4.7E-82 T 15-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 NJ56_16925 02f025141d7bca7663b0e2c42e00a0f7 229 Gene3D G3DSA:3.40.50.300 1 229 1.8E-86 T 15-10-2018 NJ56_16925 02f025141d7bca7663b0e2c42e00a0f7 229 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 1.9E-92 T 15-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 NJ56_16925 02f025141d7bca7663b0e2c42e00a0f7 229 SUPERFAMILY SSF52540 6 224 1.25E-48 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_13710 58629740c1d5540c2b4079aae605124b 253 SUPERFAMILY SSF88713 1 252 5.56E-77 T 15-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NJ56_13710 58629740c1d5540c2b4079aae605124b 253 Pfam PF04794 YdjC-like protein 5 241 1.1E-63 T 15-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like NJ56_13710 58629740c1d5540c2b4079aae605124b 253 Hamap MF_01246 Chitooligosaccharide deacetylase [chbG]. 3 250 40.202 T 15-10-2018 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria GO:0000272|GO:0016811 NJ56_13710 58629740c1d5540c2b4079aae605124b 253 Gene3D G3DSA:3.20.20.370 1 253 2.2E-73 T 15-10-2018 NJ56_07860 cf0da9368bed44d1113aa668b9007095 329 SUPERFAMILY SSF50129 8 142 1.28E-34 T 15-10-2018 IPR011032 GroES-like superfamily NJ56_07860 cf0da9368bed44d1113aa668b9007095 329 Gene3D G3DSA:3.90.180.10 11 321 1.9E-119 T 15-10-2018 NJ56_07860 cf0da9368bed44d1113aa668b9007095 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 88 1.3E-10 T 15-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 NJ56_07860 cf0da9368bed44d1113aa668b9007095 329 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 15-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 NJ56_07860 cf0da9368bed44d1113aa668b9007095 329 Pfam PF00107 Zinc-binding dehydrogenase 152 258 6.0E-30 T 15-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 NJ56_07860 cf0da9368bed44d1113aa668b9007095 329 SMART SM00829 11 325 1.1E-26 T 15-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 NJ56_07860 cf0da9368bed44d1113aa668b9007095 329 Gene3D G3DSA:3.40.50.720 124 269 1.9E-119 T 15-10-2018 NJ56_07860 cf0da9368bed44d1113aa668b9007095 329 SUPERFAMILY SSF51735 112 276 1.72E-47 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_04530 d259c6eeb99f6d2245651490448f4532 252 Pfam PF14348 Domain of unknown function (DUF4400) 56 249 9.5E-73 T 15-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type NJ56_04530 d259c6eeb99f6d2245651490448f4532 252 TIGRFAM TIGR03747 conj_TIGR03747: integrating conjugative element membrane protein, PFL_4697 family 20 252 6.8E-95 T 15-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type NJ56_15860 3df54e030765b288b17627dc89a46f53 161 Pfam PF00293 NUDIX domain 5 126 2.4E-16 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_15860 3df54e030765b288b17627dc89a46f53 161 Gene3D G3DSA:3.90.79.10 2 147 4.3E-41 T 15-10-2018 NJ56_15860 3df54e030765b288b17627dc89a46f53 161 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 15-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NJ56_15860 3df54e030765b288b17627dc89a46f53 161 SUPERFAMILY SSF55811 4 145 4.2E-24 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_15860 3df54e030765b288b17627dc89a46f53 161 PRINTS PR01404 DATP pyrophosphohydrolase signature 3 20 4.0E-43 T 15-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 NJ56_15860 3df54e030765b288b17627dc89a46f53 161 PRINTS PR01404 DATP pyrophosphohydrolase signature 71 90 4.0E-43 T 15-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 NJ56_15860 3df54e030765b288b17627dc89a46f53 161 PRINTS PR01404 DATP pyrophosphohydrolase signature 20 41 4.0E-43 T 15-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 NJ56_15860 3df54e030765b288b17627dc89a46f53 161 PRINTS PR01404 DATP pyrophosphohydrolase signature 126 139 4.0E-43 T 15-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 NJ56_15860 3df54e030765b288b17627dc89a46f53 161 PRINTS PR01404 DATP pyrophosphohydrolase signature 99 120 4.0E-43 T 15-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 NJ56_12820 1b40b535064b54aa78c7ac8ade291a11 350 SUPERFAMILY SSF52172 1 108 9.53E-28 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_12820 1b40b535064b54aa78c7ac8ade291a11 350 Pfam PF00072 Response regulator receiver domain 6 109 3.2E-24 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_12820 1b40b535064b54aa78c7ac8ade291a11 350 SUPERFAMILY SSF52738 157 344 6.15E-76 T 15-10-2018 IPR035909 Methylesterase CheB, C-terminal NJ56_12820 1b40b535064b54aa78c7ac8ade291a11 350 SMART SM00448 4 119 5.2E-22 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_12820 1b40b535064b54aa78c7ac8ade291a11 350 Pfam PF01339 CheB methylesterase 160 337 1.9E-63 T 15-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NJ56_12820 1b40b535064b54aa78c7ac8ade291a11 350 PIRSF PIRSF000876 1 347 1.4E-138 T 15-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NJ56_12820 1b40b535064b54aa78c7ac8ade291a11 350 Gene3D G3DSA:3.40.50.180 149 350 1.7E-84 T 15-10-2018 IPR035909 Methylesterase CheB, C-terminal NJ56_12820 1b40b535064b54aa78c7ac8ade291a11 350 Gene3D G3DSA:3.40.50.2300 1 133 2.7E-31 T 15-10-2018 NJ56_12820 1b40b535064b54aa78c7ac8ade291a11 350 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 343 41.429 T 15-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NJ56_12105 0aabcc39190352fa761fbc1202ef9e48 68 Pfam PF10948 Protein of unknown function (DUF2635) 4 44 2.0E-16 T 15-10-2018 IPR024400 Protein of unknown function DUF2635 NJ56_12105 0aabcc39190352fa761fbc1202ef9e48 68 ProDom PD027295 GP38 FLUMU BACTERIOPHAGE MU-LIKE ECS4978 SB12 PHAGE ORF10 PROPHAGE 1 40 2.0E-10 T 15-10-2018 IPR024400 Protein of unknown function DUF2635 NJ56_07895 61f9f11cc346caa7942b5816f6703cf3 222 Pfam PF14497 Glutathione S-transferase, C-terminal domain 139 207 3.5E-7 T 15-10-2018 IPR004046 Glutathione S-transferase, C-terminal NJ56_07895 61f9f11cc346caa7942b5816f6703cf3 222 Gene3D G3DSA:1.20.1050.10 85 212 3.5E-28 T 15-10-2018 NJ56_07895 61f9f11cc346caa7942b5816f6703cf3 222 SUPERFAMILY SSF52833 3 78 1.85E-20 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_07895 61f9f11cc346caa7942b5816f6703cf3 222 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 74 4.3E-15 T 15-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 NJ56_07895 61f9f11cc346caa7942b5816f6703cf3 222 SUPERFAMILY SSF47616 82 215 5.85E-22 T 15-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NJ56_07895 61f9f11cc346caa7942b5816f6703cf3 222 Gene3D G3DSA:3.40.30.10 1 84 2.0E-36 T 15-10-2018 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 1.4E-70 T 15-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 Gene3D G3DSA:2.40.50.140 1 124 2.1E-63 T 15-10-2018 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 15-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.451 T 15-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.5E-60 T 15-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.5E-60 T 15-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.5E-60 T 15-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.5E-60 T 15-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.5E-60 T 15-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.5E-60 T 15-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 PIRSF PIRSF002133 1 124 4.0E-54 T 15-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 SUPERFAMILY SSF50249 3 123 4.45E-52 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_07325 a661ab707e73da46801d1cf7dacbabce 124 Pfam PF00164 Ribosomal protein S12/S23 13 123 5.6E-43 T 15-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 6 392 7.4E-134 T 15-10-2018 IPR017687 Outer membrane protein assembly factor BamB NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 2 393 40.387 T 15-10-2018 IPR017687 Outer membrane protein assembly factor BamB NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 Gene3D G3DSA:2.130.10.10 21 392 2.1E-94 T 15-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 SMART SM00564 156 187 1.2E-4 T 15-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 SMART SM00564 115 147 0.0014 T 15-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 SMART SM00564 201 232 67.0 T 15-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 SMART SM00564 290 321 320.0 T 15-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 SMART SM00564 65 96 0.48 T 15-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 SMART SM00564 330 362 8.1 T 15-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 SMART SM00564 252 283 7.7E-6 T 15-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 SUPERFAMILY SSF50998 24 383 1.11E-77 T 15-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily NJ56_10630 306002fd2adc0f83d52e927cafc4b14f 393 Pfam PF13360 PQQ-like domain 78 320 7.9E-53 T 15-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat NJ56_00820 762e6b0e97dce0af9d654af2a8eada64 428 Pfam PF00072 Response regulator receiver domain 13 124 2.6E-27 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00820 762e6b0e97dce0af9d654af2a8eada64 428 SUPERFAMILY SSF52172 11 140 1.85E-34 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_00820 762e6b0e97dce0af9d654af2a8eada64 428 Gene3D G3DSA:3.40.50.2300 4 139 3.6E-32 T 15-10-2018 NJ56_00820 762e6b0e97dce0af9d654af2a8eada64 428 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 200 418 7.8E-34 T 15-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 NJ56_00820 762e6b0e97dce0af9d654af2a8eada64 428 SMART SM00448 11 124 1.2E-33 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00820 762e6b0e97dce0af9d654af2a8eada64 428 SMART SM00331 173 418 7.4E-13 T 15-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 NJ56_00820 762e6b0e97dce0af9d654af2a8eada64 428 Gene3D G3DSA:3.60.40.10 140 419 3.5E-55 T 15-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 NJ56_03215 0f09880d0daf082dcf334f831c166975 360 Gene3D G3DSA:3.30.70.270 176 351 1.6E-51 T 15-10-2018 NJ56_03215 0f09880d0daf082dcf334f831c166975 360 Pfam PF00990 Diguanylate cyclase, GGDEF domain 191 345 4.7E-46 T 15-10-2018 IPR000160 GGDEF domain NJ56_03215 0f09880d0daf082dcf334f831c166975 360 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 189 348 6.3E-45 T 15-10-2018 IPR000160 GGDEF domain NJ56_03215 0f09880d0daf082dcf334f831c166975 360 SUPERFAMILY SSF55073 195 350 1.33E-44 T 15-10-2018 IPR029787 Nucleotide cyclase NJ56_03215 0f09880d0daf082dcf334f831c166975 360 SMART SM00267 179 349 8.5E-55 T 15-10-2018 IPR000160 GGDEF domain NJ56_10585 da88c88bdd0031cf22932b6e9ef2ca07 778 Pfam PF00912 Transglycosylase 62 227 5.6E-51 T 15-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_10585 da88c88bdd0031cf22932b6e9ef2ca07 778 SUPERFAMILY SSF56601 209 643 2.62E-92 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_10585 da88c88bdd0031cf22932b6e9ef2ca07 778 Gene3D G3DSA:3.40.710.10 261 598 1.7E-64 T 15-10-2018 NJ56_10585 da88c88bdd0031cf22932b6e9ef2ca07 778 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 39 775 5.8E-248 T 15-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_10585 da88c88bdd0031cf22932b6e9ef2ca07 778 SUPERFAMILY SSF53955 40 260 1.12E-63 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_10585 da88c88bdd0031cf22932b6e9ef2ca07 778 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 691 774 1.3E-17 T 15-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_10585 da88c88bdd0031cf22932b6e9ef2ca07 778 Pfam PF00905 Penicillin binding protein transpeptidase domain 304 423 1.5E-8 T 15-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 NJ56_10585 da88c88bdd0031cf22932b6e9ef2ca07 778 Gene3D G3DSA:1.10.3810.10 56 251 7.5E-54 T 15-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_08840 ca11469b54c0f6b78462a09bf68f62a8 277 Pfam PF00482 Type II secretion system (T2SS), protein F 136 264 3.9E-12 T 15-10-2018 IPR018076 Type II secretion system F domain NJ56_15965 6f8109576e76334a4ca6c8e7b4fa215d 245 SUPERFAMILY SSF89550 3 241 2.35E-63 T 15-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 NJ56_15965 6f8109576e76334a4ca6c8e7b4fa215d 245 Pfam PF02811 PHP domain 5 159 1.4E-8 T 15-10-2018 IPR004013 PHP domain GO:0003824 NJ56_15965 6f8109576e76334a4ca6c8e7b4fa215d 245 SMART SM00481 4 78 5.2E-16 T 15-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal NJ56_15965 6f8109576e76334a4ca6c8e7b4fa215d 245 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 1 243 49.865 T 15-10-2018 IPR023710 Probable phosphatase YcdX GO:0008270 NJ56_15965 6f8109576e76334a4ca6c8e7b4fa215d 245 Gene3D G3DSA:3.20.20.140 1 245 2.1E-66 T 15-10-2018 NJ56_07825 85f33d115a0044a7119b7f72e90b224c 288 Gene3D G3DSA:1.10.357.140 23 185 5.5E-41 T 15-10-2018 NJ56_07825 85f33d115a0044a7119b7f72e90b224c 288 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 5 288 30.587 T 15-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 NJ56_07825 85f33d115a0044a7119b7f72e90b224c 288 Pfam PF01040 UbiA prenyltransferase family 28 270 2.6E-68 T 15-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 NJ56_07825 85f33d115a0044a7119b7f72e90b224c 288 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 10 288 2.3E-112 T 15-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 NJ56_07825 85f33d115a0044a7119b7f72e90b224c 288 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 67 89 - T 15-10-2018 IPR030470 UbiA prenyltransferase conserved site NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 131 190 2.4E-14 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 SMART SM00387 233 349 2.3E-32 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 SUPERFAMILY SSF47384 121 190 1.06E-12 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 Gene3D G3DSA:3.30.450.20 9 112 1.3E-16 T 15-10-2018 NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 SUPERFAMILY SSF55785 11 99 1.61E-5 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 Gene3D G3DSA:3.30.565.10 192 348 7.6E-43 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 Gene3D G3DSA:1.10.287.130 116 191 4.8E-14 T 15-10-2018 NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 SMART SM00091 7 75 1.7E-7 T 15-10-2018 IPR000014 PAS domain NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 SUPERFAMILY SSF55874 198 346 3.8E-36 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 346 9.9E-12 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 295 9.9E-12 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 9.9E-12 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 Pfam PF00989 PAS fold 11 97 1.9E-5 T 15-10-2018 IPR013767 PAS fold GO:0006355 NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 347 3.8E-16 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_06065 f8bd9d3dafc91615d06ecaf3b13dca33 349 SMART SM00388 129 194 1.0E-14 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_00290 ddc55e459d2c69b35644de5f4d4f2047 142 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 6 140 28.191 T 15-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 NJ56_00290 ddc55e459d2c69b35644de5f4d4f2047 142 TIGRFAM TIGR02801 tolR: protein TolR 13 140 1.2E-38 T 15-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 NJ56_00290 ddc55e459d2c69b35644de5f4d4f2047 142 Gene3D G3DSA:3.30.420.270 60 133 4.0E-25 T 15-10-2018 NJ56_00290 ddc55e459d2c69b35644de5f4d4f2047 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 141 1.6E-24 T 15-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 NJ56_16600 66a1b1e2c97e9e6863cd41f9900422c5 84 ProDom PD060858 YCEP CYTOPLASMIC STY1199 ESCHERICHIA COLI SIMILAR ECS1438 1 84 2.0E-37 T 15-10-2018 IPR025730 Biofilm regulator BssS NJ56_16600 66a1b1e2c97e9e6863cd41f9900422c5 84 Pfam PF13991 BssS protein family 11 81 5.4E-37 T 15-10-2018 IPR025730 Biofilm regulator BssS NJ56_15380 92f41425eaede10d4a372c95fda3b0f2 150 Pfam PF05775 Enterobacteria AfaD invasin protein 43 144 6.6E-24 T 15-10-2018 IPR008394 Enterobacteria AfaD invasin NJ56_15380 92f41425eaede10d4a372c95fda3b0f2 150 SUPERFAMILY SSF49401 32 149 1.99E-39 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_15380 92f41425eaede10d4a372c95fda3b0f2 150 Gene3D G3DSA:2.60.40.1950 21 150 3.7E-39 T 15-10-2018 NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 Pfam PF11734 TilS substrate C-terminal domain 365 437 3.1E-25 T 15-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 Pfam PF09179 TilS substrate binding domain 249 316 6.8E-19 T 15-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 21 204 3.7E-51 T 15-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 SUPERFAMILY SSF52402 13 234 5.95E-60 T 15-10-2018 NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 Gene3D G3DSA:3.40.50.620 11 234 1.6E-67 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 9 308 23.498 T 15-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 Gene3D G3DSA:1.20.59.20 235 319 6.8E-31 T 15-10-2018 NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 SUPERFAMILY SSF82829 235 319 5.75E-26 T 15-10-2018 NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 SUPERFAMILY SSF56037 327 439 1.96E-31 T 15-10-2018 NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 365 409 1.6E-13 T 15-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 SMART SM00977 365 437 5.1E-22 T 15-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NJ56_09790 f20a3f29551cb8e524a500b3ef76f88e 447 Pfam PF01171 PP-loop family 22 199 1.9E-54 T 15-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 NJ56_10310 33ac62d07f0df937ad45a181949023c9 242 Pfam PF12796 Ankyrin repeats (3 copies) 70 163 2.1E-8 T 15-10-2018 IPR020683 Ankyrin repeat-containing domain NJ56_10310 33ac62d07f0df937ad45a181949023c9 242 SMART SM00248 132 161 7.2 T 15-10-2018 IPR002110 Ankyrin repeat GO:0005515 NJ56_10310 33ac62d07f0df937ad45a181949023c9 242 SMART SM00248 98 127 1.0 T 15-10-2018 IPR002110 Ankyrin repeat GO:0005515 NJ56_10310 33ac62d07f0df937ad45a181949023c9 242 SMART SM00248 165 194 0.15 T 15-10-2018 IPR002110 Ankyrin repeat GO:0005515 NJ56_10310 33ac62d07f0df937ad45a181949023c9 242 SMART SM00248 65 94 69.0 T 15-10-2018 IPR002110 Ankyrin repeat GO:0005515 NJ56_10310 33ac62d07f0df937ad45a181949023c9 242 Gene3D G3DSA:1.25.40.20 34 236 4.0E-33 T 15-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily NJ56_10310 33ac62d07f0df937ad45a181949023c9 242 SUPERFAMILY SSF48403 37 229 5.85E-34 T 15-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily NJ56_10310 33ac62d07f0df937ad45a181949023c9 242 Pfam PF00023 Ankyrin repeat 166 197 0.0022 T 15-10-2018 IPR002110 Ankyrin repeat GO:0005515 NJ56_14190 dcdd048b29cdf4549ab8f9c087d49901 293 Pfam PF00950 ABC 3 transport family 10 265 1.6E-90 T 15-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 NJ56_14190 dcdd048b29cdf4549ab8f9c087d49901 293 Gene3D G3DSA:1.10.3470.10 41 270 5.0E-9 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_14190 dcdd048b29cdf4549ab8f9c087d49901 293 SUPERFAMILY SSF81345 5 261 5.49E-39 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_11175 009921f385648bee72a8cfbb317d0095 71 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 68 1.4E-30 T 15-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor NJ56_11175 009921f385648bee72a8cfbb317d0095 71 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 14 68 1.0E-20 T 15-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor NJ56_14965 025378919e0478d1fc5289b83817cd0a 172 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 88 167 5.5E-33 T 15-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 NJ56_14965 025378919e0478d1fc5289b83817cd0a 172 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 21 167 40.037 T 15-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 NJ56_14965 025378919e0478d1fc5289b83817cd0a 172 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 87 166 6.6E-36 T 15-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 NJ56_14965 025378919e0478d1fc5289b83817cd0a 172 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 137 143 - T 15-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 NJ56_14965 025378919e0478d1fc5289b83817cd0a 172 SUPERFAMILY SSF46767 86 169 4.97E-33 T 15-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 NJ56_14965 025378919e0478d1fc5289b83817cd0a 172 Gene3D G3DSA:1.10.10.10 86 169 9.6E-36 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_14965 025378919e0478d1fc5289b83817cd0a 172 SUPERFAMILY SSF53155 5 92 7.45E-7 T 15-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 NJ56_14965 025378919e0478d1fc5289b83817cd0a 172 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 8 83 1.6E-11 T 15-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 NJ56_03465 dc46a00bca1b3416b1c949cf274259a5 84 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 1 84 3.5E-25 T 15-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ NJ56_03465 dc46a00bca1b3416b1c949cf274259a5 84 Gene3D G3DSA:1.10.1220.10 1 84 2.4E-34 T 15-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 NJ56_03465 dc46a00bca1b3416b1c949cf274259a5 84 Pfam PF04221 RelB antitoxin 1 62 5.1E-16 T 15-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ NJ56_15745 b57e73dea97e6a7c2f3b8b21224ce6df 89 Gene3D G3DSA:3.30.1070.10 31 87 5.9E-28 T 15-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 NJ56_15745 b57e73dea97e6a7c2f3b8b21224ce6df 89 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 2.9E-24 T 15-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 NJ56_15745 b57e73dea97e6a7c2f3b8b21224ce6df 89 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 3.0E-33 T 15-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 NJ56_15745 b57e73dea97e6a7c2f3b8b21224ce6df 89 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 86 18.604 T 15-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 NJ56_15745 b57e73dea97e6a7c2f3b8b21224ce6df 89 SUPERFAMILY SSF55229 32 85 1.44E-17 T 15-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 NJ56_13335 dab141d215c12364fb044c915e0dac73 168 Gene3D G3DSA:1.10.530.40 27 168 3.6E-46 T 15-10-2018 NJ56_13335 dab141d215c12364fb044c915e0dac73 168 Pfam PF00959 Phage lysozyme 53 158 4.6E-18 T 15-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 NJ56_13335 dab141d215c12364fb044c915e0dac73 168 SUPERFAMILY SSF53955 10 168 3.27E-53 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_05745 33d53fa3db854fc583370279e9397f36 336 Gene3D G3DSA:3.40.190.90 110 277 2.0E-131 T 15-10-2018 NJ56_05745 33d53fa3db854fc583370279e9397f36 336 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 322 4.0E-134 T 15-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 NJ56_05745 33d53fa3db854fc583370279e9397f36 336 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 328 1.8E-175 T 15-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 NJ56_05745 33d53fa3db854fc583370279e9397f36 336 SUPERFAMILY SSF56655 1 325 2.32E-111 T 15-10-2018 NJ56_05745 33d53fa3db854fc583370279e9397f36 336 Gene3D G3DSA:3.30.540.10 7 320 2.0E-131 T 15-10-2018 NJ56_05745 33d53fa3db854fc583370279e9397f36 336 PIRSF PIRSF004532 1 332 1.2E-140 T 15-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 NJ56_06910 70703c88bc7aca1f26e7807b1e4084d3 666 SUPERFAMILY SSF51445 130 567 5.28E-129 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_06910 70703c88bc7aca1f26e7807b1e4084d3 666 Hamap MF_01248 Glycogen debranching enzyme [glgX]. 3 664 70.626 T 15-10-2018 IPR022844 Glycogen debranching enzyme, bacterial GO:0004553|GO:0005977 NJ56_06910 70703c88bc7aca1f26e7807b1e4084d3 666 Gene3D G3DSA:2.60.40.1180 575 664 5.7E-24 T 15-10-2018 IPR013780 Glycosyl hydrolase, all-beta NJ56_06910 70703c88bc7aca1f26e7807b1e4084d3 666 Gene3D G3DSA:2.60.40.10 1 133 3.8E-44 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_06910 70703c88bc7aca1f26e7807b1e4084d3 666 Pfam PF00128 Alpha amylase, catalytic domain 185 299 8.6E-9 T 15-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NJ56_06910 70703c88bc7aca1f26e7807b1e4084d3 666 SUPERFAMILY SSF51011 577 634 1.71E-6 T 15-10-2018 NJ56_06910 70703c88bc7aca1f26e7807b1e4084d3 666 SMART SM00642 163 560 4.7E-8 T 15-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NJ56_06910 70703c88bc7aca1f26e7807b1e4084d3 666 Gene3D G3DSA:3.20.20.80 134 574 7.5E-179 T 15-10-2018 NJ56_06910 70703c88bc7aca1f26e7807b1e4084d3 666 SUPERFAMILY SSF81296 7 144 1.26E-41 T 15-10-2018 IPR014756 Immunoglobulin E-set NJ56_06910 70703c88bc7aca1f26e7807b1e4084d3 666 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 7 643 1.2E-276 T 15-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 NJ56_06910 70703c88bc7aca1f26e7807b1e4084d3 666 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 11 95 4.5E-17 T 15-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 NJ56_01565 037d5a9686f07afc150f5c61a97d875b 226 SUPERFAMILY SSF51735 6 226 4.63E-61 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_01565 037d5a9686f07afc150f5c61a97d875b 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 2.1E-14 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01565 037d5a9686f07afc150f5c61a97d875b 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 2.1E-14 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01565 037d5a9686f07afc150f5c61a97d875b 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.1E-14 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01565 037d5a9686f07afc150f5c61a97d875b 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 2.1E-14 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01565 037d5a9686f07afc150f5c61a97d875b 226 Pfam PF00106 short chain dehydrogenase 6 187 2.0E-27 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_01565 037d5a9686f07afc150f5c61a97d875b 226 Gene3D G3DSA:3.40.50.720 1 226 2.3E-55 T 15-10-2018 NJ56_01170 b478de59c402d4d845720dc162805ebe 214 Gene3D G3DSA:3.40.50.300 1 214 3.2E-79 T 15-10-2018 NJ56_01170 b478de59c402d4d845720dc162805ebe 214 SUPERFAMILY SSF52540 1 212 6.25E-44 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01170 b478de59c402d4d845720dc162805ebe 214 Pfam PF00406 Adenylate kinase 5 185 1.7E-60 T 15-10-2018 NJ56_01170 b478de59c402d4d845720dc162805ebe 214 PRINTS PR00094 Adenylate kinase signature 156 171 2.7E-35 T 15-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 NJ56_01170 b478de59c402d4d845720dc162805ebe 214 PRINTS PR00094 Adenylate kinase signature 81 97 2.7E-35 T 15-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 NJ56_01170 b478de59c402d4d845720dc162805ebe 214 PRINTS PR00094 Adenylate kinase signature 4 17 2.7E-35 T 15-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 NJ56_01170 b478de59c402d4d845720dc162805ebe 214 PRINTS PR00094 Adenylate kinase signature 32 46 2.7E-35 T 15-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 NJ56_01170 b478de59c402d4d845720dc162805ebe 214 PRINTS PR00094 Adenylate kinase signature 173 187 2.7E-35 T 15-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 NJ56_01170 b478de59c402d4d845720dc162805ebe 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 2.7E-14 T 15-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 NJ56_01170 b478de59c402d4d845720dc162805ebe 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 51.928 T 15-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 NJ56_01170 b478de59c402d4d845720dc162805ebe 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 212 3.1E-75 T 15-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 NJ56_01170 b478de59c402d4d845720dc162805ebe 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 15-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 NJ56_01885 c0c83143f76e252928596e1f8b73a5a3 359 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 8 348 2.1E-166 T 15-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 NJ56_01885 c0c83143f76e252928596e1f8b73a5a3 359 PIRSF PIRSF001361 1 354 9.4E-163 T 15-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 NJ56_01885 c0c83143f76e252928596e1f8b73a5a3 359 Gene3D G3DSA:3.20.20.70 3 350 5.0E-155 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_01885 c0c83143f76e252928596e1f8b73a5a3 359 Pfam PF00793 DAHP synthetase I family 40 340 1.1E-104 T 15-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 NJ56_01885 c0c83143f76e252928596e1f8b73a5a3 359 SUPERFAMILY SSF51569 9 346 5.13E-135 T 15-10-2018 NJ56_16145 b6d94df6df49b5fa9d25489cce5818fb 161 Gene3D G3DSA:3.40.50.1450 5 158 1.1E-49 T 15-10-2018 IPR023430 Peptidase HybD-like domain superfamily NJ56_16145 b6d94df6df49b5fa9d25489cce5818fb 161 Pfam PF01750 Hydrogenase maturation protease 27 138 1.4E-23 T 15-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 NJ56_16145 b6d94df6df49b5fa9d25489cce5818fb 161 TIGRFAM TIGR00142 hycI: hydrogenase maturation peptidase HycI 10 146 6.8E-50 T 15-10-2018 IPR004420 Peptidase A31, hydrogenase maturation protease HycI GO:0008233 NJ56_16145 b6d94df6df49b5fa9d25489cce5818fb 161 PRINTS PR00446 Hydrogen uptake protein signature 20 31 1.5E-12 T 15-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 NJ56_16145 b6d94df6df49b5fa9d25489cce5818fb 161 PRINTS PR00446 Hydrogen uptake protein signature 8 20 1.5E-12 T 15-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 NJ56_16145 b6d94df6df49b5fa9d25489cce5818fb 161 PRINTS PR00446 Hydrogen uptake protein signature 72 88 1.5E-12 T 15-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 NJ56_16145 b6d94df6df49b5fa9d25489cce5818fb 161 PRINTS PR00446 Hydrogen uptake protein signature 61 71 1.5E-12 T 15-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 NJ56_16145 b6d94df6df49b5fa9d25489cce5818fb 161 PRINTS PR00446 Hydrogen uptake protein signature 38 55 1.5E-12 T 15-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 NJ56_16145 b6d94df6df49b5fa9d25489cce5818fb 161 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 10 138 1.2E-32 T 15-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 NJ56_16145 b6d94df6df49b5fa9d25489cce5818fb 161 SUPERFAMILY SSF53163 7 148 2.88E-32 T 15-10-2018 IPR023430 Peptidase HybD-like domain superfamily NJ56_13365 d0ec64d90c63b8eb8420319ce6949e74 284 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 6 284 3.8E-111 T 15-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 NJ56_04070 510dbfb1da3dae556da62cdb3dbd656f 141 Pfam PF02082 Transcriptional regulator 2 82 1.5E-24 T 15-10-2018 IPR000944 Transcription regulator Rrf2-type NJ56_04070 510dbfb1da3dae556da62cdb3dbd656f 141 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 15-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site NJ56_04070 510dbfb1da3dae556da62cdb3dbd656f 141 SUPERFAMILY SSF46785 2 130 1.58E-34 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_04070 510dbfb1da3dae556da62cdb3dbd656f 141 Hamap MF_01177 HTH-type transcriptional repressor NsrR [nsrR]. 1 141 44.93 T 15-10-2018 IPR023761 Transcriptional repressor HTH, NsrR GO:0045892 NJ56_04070 510dbfb1da3dae556da62cdb3dbd656f 141 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 129 4.2E-37 T 15-10-2018 IPR000944 Transcription regulator Rrf2-type NJ56_04070 510dbfb1da3dae556da62cdb3dbd656f 141 Gene3D G3DSA:1.10.10.10 1 136 2.8E-35 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_16400 9226103b2c913f56d5862f7e08698e48 484 SMART SM00388 264 328 0.0057 T 15-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NJ56_16400 9226103b2c913f56d5862f7e08698e48 484 SMART SM00387 373 479 1.1E-22 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_16400 9226103b2c913f56d5862f7e08698e48 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 422 7.9E-8 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_16400 9226103b2c913f56d5862f7e08698e48 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 457 7.9E-8 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_16400 9226103b2c913f56d5862f7e08698e48 484 Gene3D G3DSA:3.30.450.140 42 193 4.3E-64 T 15-10-2018 IPR038429 PhoQ Sensor superfamily NJ56_16400 9226103b2c913f56d5862f7e08698e48 484 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 375 474 1.3E-12 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_16400 9226103b2c913f56d5862f7e08698e48 484 Gene3D G3DSA:3.30.565.10 334 483 6.1E-34 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_16400 9226103b2c913f56d5862f7e08698e48 484 SUPERFAMILY SSF47384 247 322 3.14E-5 T 15-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 NJ56_16400 9226103b2c913f56d5862f7e08698e48 484 Gene3D G3DSA:1.10.287.130 216 330 1.0E-7 T 15-10-2018 NJ56_16400 9226103b2c913f56d5862f7e08698e48 484 SUPERFAMILY SSF55874 321 475 2.23E-30 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_16400 9226103b2c913f56d5862f7e08698e48 484 Pfam PF08918 PhoQ Sensor 8 185 4.5E-89 T 15-10-2018 IPR015014 PhoQ Sensor GO:0000160|GO:0004673|GO:0005524|GO:0016020|GO:0018106|GO:0046872 NJ56_18220 ee5a3e559b7612466a8b83bb0a98e0ad 949 Pfam PF07916 TraG-like protein, N-terminal region 4 451 2.2E-110 T 15-10-2018 IPR012931 TraG-like, N-terminal NJ56_06795 3e43e50bf1ef91295bad19e15ef26e51 396 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_06795 3e43e50bf1ef91295bad19e15ef26e51 396 SUPERFAMILY SSF53383 30 393 1.44E-85 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_06795 3e43e50bf1ef91295bad19e15ef26e51 396 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 8 393 9.1E-175 T 15-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 NJ56_06795 3e43e50bf1ef91295bad19e15ef26e51 396 PIRSF PIRSF001434 1 394 8.8E-114 T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_06795 3e43e50bf1ef91295bad19e15ef26e51 396 Gene3D G3DSA:3.40.640.10 1 258 7.2E-67 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_06795 3e43e50bf1ef91295bad19e15ef26e51 396 Gene3D G3DSA:3.90.1150.10 259 395 2.2E-42 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_06795 3e43e50bf1ef91295bad19e15ef26e51 396 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 391 8.6E-114 T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_08030 e520ba81854d91d73644ea96ecc39ef4 286 Pfam PF00795 Carbon-nitrogen hydrolase 6 259 1.2E-49 T 15-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 NJ56_08030 e520ba81854d91d73644ea96ecc39ef4 286 SUPERFAMILY SSF56317 2 267 3.79E-73 T 15-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily NJ56_08030 e520ba81854d91d73644ea96ecc39ef4 286 Gene3D G3DSA:3.60.110.10 4 271 3.8E-85 T 15-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily NJ56_17335 dc7babe4dea0a0b83ffff70445923375 231 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 2 226 1.3E-100 T 15-10-2018 IPR005261 Conserved hypothetical protein CHP00659 NJ56_17335 dc7babe4dea0a0b83ffff70445923375 231 Pfam PF04172 LrgB-like family 12 224 1.8E-77 T 15-10-2018 IPR007300 CidB/LrgB family NJ56_09465 97f5e31384a8fa971f059c899fa948e9 340 SUPERFAMILY SSF53822 60 334 1.57E-84 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_09465 97f5e31384a8fa971f059c899fa948e9 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.6E-19 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_09465 97f5e31384a8fa971f059c899fa948e9 340 Gene3D G3DSA:1.10.260.40 1 59 6.0E-22 T 15-10-2018 NJ56_09465 97f5e31384a8fa971f059c899fa948e9 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 15-10-2018 NJ56_09465 97f5e31384a8fa971f059c899fa948e9 340 Pfam PF13377 Periplasmic binding protein-like domain 168 329 9.3E-34 T 15-10-2018 NJ56_09465 97f5e31384a8fa971f059c899fa948e9 340 Gene3D G3DSA:3.40.50.2300 160 289 5.1E-71 T 15-10-2018 NJ56_09465 97f5e31384a8fa971f059c899fa948e9 340 Gene3D G3DSA:3.40.50.2300 62 306 5.1E-71 T 15-10-2018 NJ56_09465 97f5e31384a8fa971f059c899fa948e9 340 SUPERFAMILY SSF47413 1 59 2.53E-16 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_09465 97f5e31384a8fa971f059c899fa948e9 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.2E-7 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_09465 97f5e31384a8fa971f059c899fa948e9 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.2E-7 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_09465 97f5e31384a8fa971f059c899fa948e9 340 SMART SM00354 1 71 9.8E-34 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_01400 1296dc23a2635ef6a3d1a29272a9a82b 192 Pfam PF03923 Uncharacterized lipoprotein 29 188 9.5E-54 T 15-10-2018 IPR005619 Uncharacterised protein family, YajG NJ56_11890 a9dc2046f37e52f64a5b43c64ca43baf 330 SUPERFAMILY SSF56281 72 292 3.93E-35 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_11890 a9dc2046f37e52f64a5b43c64ca43baf 330 Gene3D G3DSA:3.60.15.10 52 328 5.3E-83 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_11890 a9dc2046f37e52f64a5b43c64ca43baf 330 Pfam PF12706 Beta-lactamase superfamily domain 88 286 1.6E-39 T 15-10-2018 IPR001279 Metallo-beta-lactamase NJ56_11890 a9dc2046f37e52f64a5b43c64ca43baf 330 PIRSF PIRSF038896 2 327 9.9E-99 T 15-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 NJ56_13865 775add59bf16d370e22fd97a4237bea5 569 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 213 4.2E-16 T 15-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 NJ56_13865 775add59bf16d370e22fd97a4237bea5 569 SUPERFAMILY SSF56601 228 556 2.15E-84 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_13865 775add59bf16d370e22fd97a4237bea5 569 Gene3D G3DSA:3.30.450.330 230 543 5.0E-102 T 15-10-2018 NJ56_13865 775add59bf16d370e22fd97a4237bea5 569 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 12 563 44.551 T 15-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_13865 775add59bf16d370e22fd97a4237bea5 569 Pfam PF00905 Penicillin binding protein transpeptidase domain 253 547 1.2E-78 T 15-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 NJ56_13865 775add59bf16d370e22fd97a4237bea5 569 Gene3D G3DSA:3.90.1310.30 52 228 3.1E-43 T 15-10-2018 NJ56_13865 775add59bf16d370e22fd97a4237bea5 569 Gene3D G3DSA:3.40.710.10 289 469 5.0E-102 T 15-10-2018 NJ56_13865 775add59bf16d370e22fd97a4237bea5 569 SUPERFAMILY SSF56519 55 227 3.14E-44 T 15-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 NJ56_17470 657466082070d78cf1a6b1fafb70aad9 246 SMART SM00079 25 243 9.2E-8 T 15-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 NJ56_17470 657466082070d78cf1a6b1fafb70aad9 246 SMART SM00062 25 244 3.0E-69 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_17470 657466082070d78cf1a6b1fafb70aad9 246 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 242 8.5E-68 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_17470 657466082070d78cf1a6b1fafb70aad9 246 Gene3D G3DSA:3.40.190.10 34 241 1.7E-84 T 15-10-2018 NJ56_17470 657466082070d78cf1a6b1fafb70aad9 246 SUPERFAMILY SSF53850 8 243 1.29E-72 T 15-10-2018 NJ56_17470 657466082070d78cf1a6b1fafb70aad9 246 Gene3D G3DSA:3.40.190.10 109 204 1.7E-84 T 15-10-2018 NJ56_17470 657466082070d78cf1a6b1fafb70aad9 246 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 47 60 - T 15-10-2018 IPR018313 Solute-binding protein family 3, conserved site NJ56_07265 3686497e656f135ab4162c2c42a6295e 328 Pfam PF00535 Glycosyl transferase family 2 7 130 7.3E-30 T 15-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 NJ56_07265 3686497e656f135ab4162c2c42a6295e 328 Gene3D G3DSA:3.90.550.10 5 205 1.1E-43 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_07265 3686497e656f135ab4162c2c42a6295e 328 SUPERFAMILY SSF53448 6 229 1.41E-49 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_08650 3bb456d2e95cd2afd6ec9b58dcb273d7 215 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 184 4.0E-50 T 15-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 NJ56_08650 3bb456d2e95cd2afd6ec9b58dcb273d7 215 SMART SM01207 10 185 6.2E-83 T 15-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 NJ56_08650 3bb456d2e95cd2afd6ec9b58dcb273d7 215 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 18.636 T 15-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 NJ56_08650 3bb456d2e95cd2afd6ec9b58dcb273d7 215 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 1 195 6.5E-81 T 15-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 NJ56_01050 6a3de46c0ee7f26c58571265eb7c34ab 149 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 145 7.7E-23 T 15-10-2018 IPR002810 NfeD-like, C-terminal domain NJ56_01050 6a3de46c0ee7f26c58571265eb7c34ab 149 Gene3D G3DSA:2.40.50.140 84 149 8.8E-10 T 15-10-2018 NJ56_01050 6a3de46c0ee7f26c58571265eb7c34ab 149 SUPERFAMILY SSF141322 91 147 1.16E-5 T 15-10-2018 NJ56_09815 c839d9ce7e7bbe7213d3a47b5656c67f 138 SUPERFAMILY SSF75620 9 113 9.42E-13 T 15-10-2018 NJ56_09815 c839d9ce7e7bbe7213d3a47b5656c67f 138 Pfam PF00472 RF-1 domain 8 127 1.5E-21 T 15-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 NJ56_09815 c839d9ce7e7bbe7213d3a47b5656c67f 138 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 15-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 NJ56_09815 c839d9ce7e7bbe7213d3a47b5656c67f 138 Gene3D G3DSA:3.30.160.20 1 138 1.3E-35 T 15-10-2018 NJ56_08130 6b0f0c151065b6804e3d96c896afa33d 153 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 6 150 5.0E-65 T 15-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 NJ56_08130 6b0f0c151065b6804e3d96c896afa33d 153 SUPERFAMILY SSF57825 101 151 6.93E-16 T 15-10-2018 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily NJ56_08130 6b0f0c151065b6804e3d96c896afa33d 153 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 103 149 2.7E-19 T 15-10-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal NJ56_08130 6b0f0c151065b6804e3d96c896afa33d 153 SUPERFAMILY SSF54893 2 100 8.5E-35 T 15-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily NJ56_08130 6b0f0c151065b6804e3d96c896afa33d 153 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 9 99 1.0E-44 T 15-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal NJ56_08130 6b0f0c151065b6804e3d96c896afa33d 153 Gene3D G3DSA:3.30.70.140 1 100 1.0E-36 T 15-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily NJ56_08130 6b0f0c151065b6804e3d96c896afa33d 153 Gene3D G3DSA:2.30.30.20 101 153 3.0E-25 T 15-10-2018 NJ56_08130 6b0f0c151065b6804e3d96c896afa33d 153 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 7 97 7.4E-30 T 15-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal NJ56_08130 6b0f0c151065b6804e3d96c896afa33d 153 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 4 152 32.876 T 15-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 NJ56_07545 990b08e19c0360b81c73d355f3e9ab07 178 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 103 140 3.3E-14 T 15-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 NJ56_07545 990b08e19c0360b81c73d355f3e9ab07 178 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 59 96 2.5E-16 T 15-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 NJ56_07545 990b08e19c0360b81c73d355f3e9ab07 178 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 11 47 4.3E-15 T 15-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 NJ56_07545 990b08e19c0360b81c73d355f3e9ab07 178 Gene3D G3DSA:3.30.65.10 52 99 3.1E-9 T 15-10-2018 NJ56_07545 990b08e19c0360b81c73d355f3e9ab07 178 Gene3D G3DSA:3.30.65.10 4 51 2.7E-9 T 15-10-2018 NJ56_07545 990b08e19c0360b81c73d355f3e9ab07 178 SUPERFAMILY SSF57783 100 135 1.0E-4 T 15-10-2018 NJ56_07545 990b08e19c0360b81c73d355f3e9ab07 178 SUPERFAMILY SSF57783 58 97 3.06E-13 T 15-10-2018 NJ56_07545 990b08e19c0360b81c73d355f3e9ab07 178 SUPERFAMILY SSF57783 12 48 2.21E-12 T 15-10-2018 NJ56_08395 f1348618dd5e1fd01e3a0fafe302449a 264 SMART SM00895 96 220 1.9E-14 T 15-10-2018 IPR011711 GntR, C-terminal NJ56_08395 f1348618dd5e1fd01e3a0fafe302449a 264 SUPERFAMILY SSF46785 2 76 6.52E-22 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_08395 f1348618dd5e1fd01e3a0fafe302449a 264 SUPERFAMILY SSF48008 94 226 6.02E-20 T 15-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal NJ56_08395 f1348618dd5e1fd01e3a0fafe302449a 264 SMART SM00345 13 72 8.8E-25 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_08395 f1348618dd5e1fd01e3a0fafe302449a 264 Gene3D G3DSA:1.20.120.530 95 232 2.0E-19 T 15-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal NJ56_08395 f1348618dd5e1fd01e3a0fafe302449a 264 Pfam PF07729 FCD domain 96 219 2.0E-17 T 15-10-2018 IPR011711 GntR, C-terminal NJ56_08395 f1348618dd5e1fd01e3a0fafe302449a 264 Gene3D G3DSA:1.10.10.10 3 82 6.5E-23 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_08395 f1348618dd5e1fd01e3a0fafe302449a 264 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 72 1.8E-22 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_08395 f1348618dd5e1fd01e3a0fafe302449a 264 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 1.4E-8 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_08395 f1348618dd5e1fd01e3a0fafe302449a 264 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 1.4E-8 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_08770 f78921227553b5f3ee9d5bf87b1fbbac 244 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 8.9E-49 T 15-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 NJ56_08770 f78921227553b5f3ee9d5bf87b1fbbac 244 SUPERFAMILY SSF69593 2 238 2.35E-64 T 15-10-2018 NJ56_08770 f78921227553b5f3ee9d5bf87b1fbbac 244 Pfam PF01553 Acyltransferase 59 180 2.5E-32 T 15-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 NJ56_08770 f78921227553b5f3ee9d5bf87b1fbbac 244 SMART SM00563 67 182 2.4E-40 T 15-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 NJ56_08670 7673d180405ebb2b05303d72e0d1e165 206 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 27 204 1.3E-52 T 15-10-2018 IPR016476 SH3 domain protein NJ56_08670 7673d180405ebb2b05303d72e0d1e165 206 SMART SM00287 23 89 1.4E-6 T 15-10-2018 IPR003646 SH3-like domain, bacterial-type NJ56_08670 7673d180405ebb2b05303d72e0d1e165 206 PIRSF PIRSF006158 1 205 1.4E-68 T 15-10-2018 IPR016476 SH3 domain protein NJ56_08670 7673d180405ebb2b05303d72e0d1e165 206 Pfam PF08239 Bacterial SH3 domain 35 85 1.8E-8 T 15-10-2018 IPR003646 SH3-like domain, bacterial-type NJ56_08670 7673d180405ebb2b05303d72e0d1e165 206 Gene3D G3DSA:2.30.30.40 34 86 2.3E-6 T 15-10-2018 NJ56_15925 00b4813477d64804eb9ce6f5775fcdaf 511 Pfam PF03023 MviN-like protein 28 477 8.4E-153 T 15-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ NJ56_15925 00b4813477d64804eb9ce6f5775fcdaf 511 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 506 3.6E-167 T 15-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ NJ56_15925 00b4813477d64804eb9ce6f5775fcdaf 511 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 467 20.335 T 15-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ NJ56_15925 00b4813477d64804eb9ce6f5775fcdaf 511 PIRSF PIRSF002869 1 510 4.2E-177 T 15-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ NJ56_15925 00b4813477d64804eb9ce6f5775fcdaf 511 PRINTS PR01806 Virulence factor MviN signature 33 52 2.1E-86 T 15-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ NJ56_15925 00b4813477d64804eb9ce6f5775fcdaf 511 PRINTS PR01806 Virulence factor MviN signature 409 426 2.1E-86 T 15-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ NJ56_15925 00b4813477d64804eb9ce6f5775fcdaf 511 PRINTS PR01806 Virulence factor MviN signature 52 68 2.1E-86 T 15-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ NJ56_15925 00b4813477d64804eb9ce6f5775fcdaf 511 PRINTS PR01806 Virulence factor MviN signature 133 157 2.1E-86 T 15-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ NJ56_15925 00b4813477d64804eb9ce6f5775fcdaf 511 PRINTS PR01806 Virulence factor MviN signature 157 178 2.1E-86 T 15-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ NJ56_15925 00b4813477d64804eb9ce6f5775fcdaf 511 PRINTS PR01806 Virulence factor MviN signature 259 285 2.1E-86 T 15-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ NJ56_15925 00b4813477d64804eb9ce6f5775fcdaf 511 PRINTS PR01806 Virulence factor MviN signature 357 376 2.1E-86 T 15-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ NJ56_08215 dcda14de6bbf62421cce6a278354dd6d 100 Gene3D G3DSA:3.30.750.24 3 99 5.7E-13 T 15-10-2018 IPR036513 STAS domain superfamily NJ56_08215 dcda14de6bbf62421cce6a278354dd6d 100 Pfam PF13466 STAS domain 16 91 1.0E-16 T 15-10-2018 IPR002645 STAS domain NJ56_08215 dcda14de6bbf62421cce6a278354dd6d 100 SUPERFAMILY SSF52091 2 96 6.47E-17 T 15-10-2018 IPR036513 STAS domain superfamily NJ56_02510 44ab0dfe3ab36d9b01561779420afccc 284 SUPERFAMILY SSF52374 1 281 1.47E-104 T 15-10-2018 NJ56_02510 44ab0dfe3ab36d9b01561779420afccc 284 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.272 T 15-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 NJ56_02510 44ab0dfe3ab36d9b01561779420afccc 284 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 280 3.7E-111 T 15-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 NJ56_02510 44ab0dfe3ab36d9b01561779420afccc 284 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 24 62 1.5E-7 T 15-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NJ56_02510 44ab0dfe3ab36d9b01561779420afccc 284 Gene3D G3DSA:3.30.1300.10 180 283 1.9E-30 T 15-10-2018 NJ56_02510 44ab0dfe3ab36d9b01561779420afccc 284 Gene3D G3DSA:3.40.50.620 1 179 5.0E-79 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_02510 44ab0dfe3ab36d9b01561779420afccc 284 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 1.4E-100 T 15-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 NJ56_02635 a30c46e6577b873454d1f8b480a7ccd4 511 Gene3D G3DSA:3.30.450.90 97 233 9.0E-43 T 15-10-2018 NJ56_02635 a30c46e6577b873454d1f8b480a7ccd4 511 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 19 78 1.9E-6 T 15-10-2018 IPR007831 General secretory system II, protein E, N-terminal NJ56_02635 a30c46e6577b873454d1f8b480a7ccd4 511 SUPERFAMILY SSF160246 18 74 3.66E-8 T 15-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily NJ56_02635 a30c46e6577b873454d1f8b480a7ccd4 511 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 327 341 - T 15-10-2018 IPR001482 Type II/IV secretion system protein NJ56_02635 a30c46e6577b873454d1f8b480a7ccd4 511 Gene3D G3DSA:3.40.50.300 234 505 6.8E-99 T 15-10-2018 NJ56_02635 a30c46e6577b873454d1f8b480a7ccd4 511 SUPERFAMILY SSF52540 121 500 6.56E-83 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02635 a30c46e6577b873454d1f8b480a7ccd4 511 Pfam PF00437 Type II/IV secretion system protein 137 399 5.4E-79 T 15-10-2018 IPR001482 Type II/IV secretion system protein NJ56_12050 a99bfa92cd18099f37dda2e9f0a0d7b2 174 TIGRFAM TIGR02681 phage_pRha: phage regulatory protein, Rha family 14 116 3.2E-34 T 15-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family NJ56_12050 a99bfa92cd18099f37dda2e9f0a0d7b2 174 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 25 111 2.9E-26 T 15-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family NJ56_10755 5994b6302d8d7c91682af00b5d8833af 352 Gene3D G3DSA:2.60.40.1090 209 352 1.9E-23 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_10755 5994b6302d8d7c91682af00b5d8833af 352 Pfam PF00419 Fimbrial protein 205 352 2.9E-15 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_10755 5994b6302d8d7c91682af00b5d8833af 352 Gene3D G3DSA:2.60.40.3310 49 147 2.0E-5 T 15-10-2018 NJ56_10755 5994b6302d8d7c91682af00b5d8833af 352 SUPERFAMILY SSF49401 210 352 1.09E-18 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_04295 435f7b6e0c087852637853e4e012ca8d 327 Pfam PF00589 Phage integrase family 153 310 2.5E-18 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_04295 435f7b6e0c087852637853e4e012ca8d 327 Gene3D G3DSA:1.10.150.130 2 103 8.5E-7 T 15-10-2018 IPR010998 Integrase/recombinase, N-terminal NJ56_04295 435f7b6e0c087852637853e4e012ca8d 327 SUPERFAMILY SSF56349 4 321 1.29E-32 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_04295 435f7b6e0c087852637853e4e012ca8d 327 Gene3D G3DSA:1.10.443.10 104 324 5.4E-26 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_13780 d6aa3f0606c02ee7f5d5d35dca48f360 291 Gene3D G3DSA:3.60.10.10 9 289 3.1E-58 T 15-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily NJ56_13780 d6aa3f0606c02ee7f5d5d35dca48f360 291 SUPERFAMILY SSF56219 21 286 2.28E-18 T 15-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily NJ56_13780 d6aa3f0606c02ee7f5d5d35dca48f360 291 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 24 257 2.2E-8 T 15-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase NJ56_02525 c43fd6e0d15177f77ab5a475783ae982 256 Pfam PF01061 ABC-2 type transporter 9 218 1.1E-36 T 15-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 NJ56_02525 c43fd6e0d15177f77ab5a475783ae982 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 1.5E-5 T 15-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 NJ56_02525 c43fd6e0d15177f77ab5a475783ae982 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 1.5E-5 T 15-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 NJ56_02525 c43fd6e0d15177f77ab5a475783ae982 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 1.5E-5 T 15-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 NJ56_02525 c43fd6e0d15177f77ab5a475783ae982 256 PIRSF PIRSF006648 9 253 2.4E-25 T 15-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 15-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 Gene3D G3DSA:1.10.3860.10 1 420 1.2E-121 T 15-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 SUPERFAMILY SSF118215 9 401 4.32E-122 T 15-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 Pfam PF00375 Sodium:dicarboxylate symporter family 9 401 3.9E-112 T 15-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 4.2E-30 T 15-10-2018 NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 7 27 4.2E-30 T 15-10-2018 NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 4.2E-30 T 15-10-2018 NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 4.2E-30 T 15-10-2018 NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 4.2E-30 T 15-10-2018 NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 4.2E-30 T 15-10-2018 NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 2 428 38.732 T 15-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 NJ56_06750 08573b9e3288e6778d522e0e89dc240d 430 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 295 318 - T 15-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site NJ56_10305 e1d4b2f403f78a23ad40a3289bd44273 306 Gene3D G3DSA:3.40.50.1820 93 210 1.1E-7 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_10305 e1d4b2f403f78a23ad40a3289bd44273 306 SUPERFAMILY SSF53474 72 241 6.13E-17 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_10305 e1d4b2f403f78a23ad40a3289bd44273 306 Pfam PF11187 Protein of unknown function (DUF2974) 117 195 2.4E-5 T 15-10-2018 IPR024499 Protein of unknown function DUF2974 NJ56_15815 608ff5e6a5a57fa02e35e83e27d9f9d8 438 Gene3D G3DSA:3.10.450.350 178 280 1.5E-31 T 15-10-2018 NJ56_15815 608ff5e6a5a57fa02e35e83e27d9f9d8 438 Gene3D G3DSA:2.70.70.10 282 411 1.7E-48 T 15-10-2018 IPR011055 Duplicated hybrid motif NJ56_15815 608ff5e6a5a57fa02e35e83e27d9f9d8 438 SUPERFAMILY SSF51261 162 406 3.35E-70 T 15-10-2018 IPR011055 Duplicated hybrid motif NJ56_15815 608ff5e6a5a57fa02e35e83e27d9f9d8 438 SMART SM00257 96 141 0.0032 T 15-10-2018 IPR018392 LysM domain NJ56_15815 608ff5e6a5a57fa02e35e83e27d9f9d8 438 Pfam PF08525 Opacity-associated protein A N-terminal motif 12 39 2.4E-8 T 15-10-2018 IPR013731 Opacity-associated protein A, N-terminal NJ56_15815 608ff5e6a5a57fa02e35e83e27d9f9d8 438 Pfam PF01551 Peptidase family M23 311 405 1.6E-33 T 15-10-2018 IPR016047 Peptidase M23 NJ56_15815 608ff5e6a5a57fa02e35e83e27d9f9d8 438 Gene3D G3DSA:3.10.450.350 83 173 1.3E-11 T 15-10-2018 NJ56_15815 608ff5e6a5a57fa02e35e83e27d9f9d8 438 Pfam PF04225 Opacity-associated protein A LysM-like domain 95 159 3.1E-6 T 15-10-2018 IPR007340 Opacity-associated protein A NJ56_13840 116be79091104c423c7d0ec660fd5ff9 453 Pfam PF00324 Amino acid permease 18 449 1.1E-115 T 15-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 NJ56_13840 116be79091104c423c7d0ec660fd5ff9 453 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 15-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 NJ56_13840 116be79091104c423c7d0ec660fd5ff9 453 PIRSF PIRSF006060 1 452 9.0E-73 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_13840 116be79091104c423c7d0ec660fd5ff9 453 Gene3D G3DSA:1.20.1740.10 9 453 2.6E-57 T 15-10-2018 NJ56_13575 176580ab785ea8dc46b647be32b17e36 388 PIRSF PIRSF000018 2 388 2.2E-129 T 15-10-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 NJ56_13575 176580ab785ea8dc46b647be32b17e36 388 Gene3D G3DSA:1.10.760.10 152 266 3.4E-9 T 15-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 NJ56_13575 176580ab785ea8dc46b647be32b17e36 388 SUPERFAMILY SSF46626 19 137 2.1E-18 T 15-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 NJ56_13575 176580ab785ea8dc46b647be32b17e36 388 Gene3D G3DSA:1.10.760.10 1 121 7.5E-10 T 15-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 NJ56_13575 176580ab785ea8dc46b647be32b17e36 388 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 16 113 1.0E-4 T 15-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_13575 176580ab785ea8dc46b647be32b17e36 388 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 282 360 1.2E-9 T 15-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_13575 176580ab785ea8dc46b647be32b17e36 388 Gene3D G3DSA:1.10.760.10 267 388 3.9E-28 T 15-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 NJ56_13575 176580ab785ea8dc46b647be32b17e36 388 SUPERFAMILY SSF46626 283 385 3.3E-19 T 15-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 NJ56_13575 176580ab785ea8dc46b647be32b17e36 388 SUPERFAMILY SSF46626 163 279 1.38E-14 T 15-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 NJ56_03250 220a1097e1dc031f76f419f35a110a55 360 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 243 3.4E-14 T 15-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NJ56_03250 220a1097e1dc031f76f419f35a110a55 360 SUPERFAMILY SSF111369 48 245 2.75E-24 T 15-10-2018 NJ56_03250 220a1097e1dc031f76f419f35a110a55 360 Gene3D G3DSA:2.40.30.170 41 268 1.8E-72 T 15-10-2018 NJ56_03250 220a1097e1dc031f76f419f35a110a55 360 Gene3D G3DSA:2.40.50.100 56 188 1.8E-72 T 15-10-2018 NJ56_03250 220a1097e1dc031f76f419f35a110a55 360 Gene3D G3DSA:1.10.287.470 90 149 1.8E-72 T 15-10-2018 NJ56_03250 220a1097e1dc031f76f419f35a110a55 360 Gene3D G3DSA:2.40.420.20 34 350 1.8E-72 T 15-10-2018 NJ56_03250 220a1097e1dc031f76f419f35a110a55 360 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 32 354 3.8E-89 T 15-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 NJ56_06830 e9ba4e94d48520c0d597971c8f03fbb0 111 Pfam PF10625 Universal stress protein B (UspB) 1 106 7.7E-55 T 15-10-2018 IPR019598 Universal stress protein B NJ56_06830 e9ba4e94d48520c0d597971c8f03fbb0 111 Hamap MF_01088 Universal stress protein B [uspB]. 1 107 37.343 T 15-10-2018 IPR019598 Universal stress protein B NJ56_04505 24503737aa72459ea8618fec0af80a9f 125 TIGRFAM TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family 22 123 2.4E-33 T 15-10-2018 IPR021356 Integrating conjugative element protein PFL4702 NJ56_04505 24503737aa72459ea8618fec0af80a9f 125 Pfam PF11190 Protein of unknown function (DUF2976) 36 122 3.9E-31 T 15-10-2018 IPR021356 Integrating conjugative element protein PFL4702 NJ56_14550 970210e20abe7841db241d8828169329 115 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 7.4E-47 T 15-10-2018 IPR004480 Monothiol glutaredoxin-related NJ56_14550 970210e20abe7841db241d8828169329 115 PIRSF PIRSF005894 1 107 7.8E-52 T 15-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 NJ56_14550 970210e20abe7841db241d8828169329 115 SUPERFAMILY SSF52833 2 101 1.43E-35 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_14550 970210e20abe7841db241d8828169329 115 Pfam PF00462 Glutaredoxin 16 80 1.1E-18 T 15-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 NJ56_14550 970210e20abe7841db241d8828169329 115 Gene3D G3DSA:3.40.30.10 1 107 5.5E-33 T 15-10-2018 NJ56_09595 435abfe757934030d515114459c62c24 271 SUPERFAMILY SSF69572 7 261 1.57E-64 T 15-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 NJ56_09595 435abfe757934030d515114459c62c24 271 Pfam PF00899 ThiF family 24 263 2.0E-39 T 15-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 NJ56_09595 435abfe757934030d515114459c62c24 271 Gene3D G3DSA:3.40.50.720 1 271 1.8E-112 T 15-10-2018 NJ56_08835 6885b83cf1725138b9cb7f9d734556f5 236 SUPERFAMILY SSF48452 39 210 5.52E-11 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_08835 6885b83cf1725138b9cb7f9d734556f5 236 Gene3D G3DSA:1.25.40.10 15 215 4.3E-13 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_09420 652ec98e1bb0d7fa6744cf2b82526fb0 378 Gene3D G3DSA:3.30.420.370 152 188 4.7E-29 T 15-10-2018 NJ56_09420 652ec98e1bb0d7fa6744cf2b82526fb0 378 Gene3D G3DSA:3.30.420.380 11 151 4.7E-29 T 15-10-2018 NJ56_09420 652ec98e1bb0d7fa6744cf2b82526fb0 378 SUPERFAMILY SSF53067 11 154 3.75E-17 T 15-10-2018 NJ56_09420 652ec98e1bb0d7fa6744cf2b82526fb0 378 Pfam PF05134 Type II secretion system (T2SS), protein L 22 188 1.6E-19 T 15-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain NJ56_02625 87a8fa774814264a23e0a4bf0eca3456 298 Gene3D G3DSA:3.20.20.70 139 285 2.5E-118 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_02625 87a8fa774814264a23e0a4bf0eca3456 298 Gene3D G3DSA:3.90.1170.20 22 294 2.5E-118 T 15-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 NJ56_02625 87a8fa774814264a23e0a4bf0eca3456 298 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 43 128 3.1E-24 T 15-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 NJ56_02625 87a8fa774814264a23e0a4bf0eca3456 298 SUPERFAMILY SSF54675 13 129 1.88E-30 T 15-10-2018 NJ56_02625 87a8fa774814264a23e0a4bf0eca3456 298 PIRSF PIRSF006250 17 298 2.2E-101 T 15-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 NJ56_02625 87a8fa774814264a23e0a4bf0eca3456 298 SUPERFAMILY SSF51690 130 295 3.61E-58 T 15-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 NJ56_02625 87a8fa774814264a23e0a4bf0eca3456 298 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 130 294 1.1E-59 T 15-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 NJ56_02625 87a8fa774814264a23e0a4bf0eca3456 298 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 27 295 1.5E-96 T 15-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 NJ56_05220 6e436d692b1a04ab369f2b50d0add621 295 TIGRFAM TIGR00688 rarD: protein RarD 8 261 2.7E-98 T 15-10-2018 IPR004626 RarD protein GO:0005887 NJ56_05220 6e436d692b1a04ab369f2b50d0add621 295 SUPERFAMILY SSF103481 43 145 1.7E-15 T 15-10-2018 NJ56_05220 6e436d692b1a04ab369f2b50d0add621 295 SUPERFAMILY SSF103481 190 285 2.09E-7 T 15-10-2018 NJ56_05220 6e436d692b1a04ab369f2b50d0add621 295 Pfam PF00892 EamA-like transporter family 9 142 3.9E-17 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_06530 df0a2e6ac8def6b87307dde5516c0a42 118 Gene3D G3DSA:3.30.1370.150 59 118 5.3E-33 T 15-10-2018 NJ56_06530 df0a2e6ac8def6b87307dde5516c0a42 118 Pfam PF10928 Protein of unknown function (DUF2810) 64 116 5.6E-32 T 15-10-2018 IPR021230 Protein of unknown function DUF2810 NJ56_06530 df0a2e6ac8def6b87307dde5516c0a42 118 Gene3D G3DSA:4.10.860.10 1 58 1.3E-12 T 15-10-2018 NJ56_14025 b3c4f559ed90185c0572ab3789910638 171 Gene3D G3DSA:1.20.1260.10 1 169 2.1E-49 T 15-10-2018 IPR012347 Ferritin-like NJ56_14025 b3c4f559ed90185c0572ab3789910638 171 Pfam PF00210 Ferritin-like domain 8 143 4.1E-40 T 15-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 NJ56_14025 b3c4f559ed90185c0572ab3789910638 171 SUPERFAMILY SSF47240 1 159 7.27E-58 T 15-10-2018 IPR009078 Ferritin-like superfamily NJ56_14160 a186aea1be13d54c2b637feade853fd2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 107 132 1.5E-25 T 15-10-2018 NJ56_14160 a186aea1be13d54c2b637feade853fd2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 184 206 1.5E-25 T 15-10-2018 NJ56_14160 a186aea1be13d54c2b637feade853fd2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 77 97 1.5E-25 T 15-10-2018 NJ56_14160 a186aea1be13d54c2b637feade853fd2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 372 391 1.5E-25 T 15-10-2018 NJ56_14160 a186aea1be13d54c2b637feade853fd2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 399 419 1.5E-25 T 15-10-2018 NJ56_14160 a186aea1be13d54c2b637feade853fd2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 29 49 1.5E-25 T 15-10-2018 NJ56_14160 a186aea1be13d54c2b637feade853fd2 465 Pfam PF00375 Sodium:dicarboxylate symporter family 31 444 1.1E-103 T 15-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 NJ56_14160 a186aea1be13d54c2b637feade853fd2 465 Gene3D G3DSA:1.10.3860.10 21 462 6.5E-109 T 15-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 NJ56_14160 a186aea1be13d54c2b637feade853fd2 465 SUPERFAMILY SSF118215 31 444 3.27E-99 T 15-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 NJ56_06120 5ca466e02a6f47729f176a08fb4d62e6 172 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 9 167 7.3E-47 T 15-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 NJ56_06120 5ca466e02a6f47729f176a08fb4d62e6 172 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 9 142 1.0E-47 T 15-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 NJ56_06120 5ca466e02a6f47729f176a08fb4d62e6 172 SUPERFAMILY SSF52540 6 169 2.19E-26 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06120 5ca466e02a6f47729f176a08fb4d62e6 172 Gene3D G3DSA:3.40.50.300 9 164 7.0E-59 T 15-10-2018 NJ56_06120 5ca466e02a6f47729f176a08fb4d62e6 172 Gene3D G3DSA:2.20.25.120 52 84 7.0E-59 T 15-10-2018 NJ56_17585 7c997d9df5d89afc09fdbc20527d9536 113 Pfam PF01844 HNH endonuclease 27 75 1.3E-10 T 15-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 NJ56_17585 7c997d9df5d89afc09fdbc20527d9536 113 SMART SM00507 15 70 1.1E-4 T 15-10-2018 IPR003615 HNH nuclease NJ56_00905 b8dea1644de3ca1741746d29af71c6c2 316 SUPERFAMILY SSF53448 1 237 7.16E-29 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_00905 b8dea1644de3ca1741746d29af71c6c2 316 Gene3D G3DSA:3.90.550.10 1 242 4.8E-32 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_00905 b8dea1644de3ca1741746d29af71c6c2 316 Pfam PF00535 Glycosyl transferase family 2 5 166 2.0E-21 T 15-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 44.33 T 15-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 15-10-2018 IPR018215 ClpP, Ser active site NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 Gene3D G3DSA:3.90.226.10 6 207 2.2E-84 T 15-10-2018 NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 14 205 1.2E-109 T 15-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 15-10-2018 IPR033135 ClpP, histidine active site NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 Pfam PF00574 Clp protease 25 205 2.3E-89 T 15-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 SUPERFAMILY SSF52096 23 206 1.77E-74 T 15-10-2018 IPR029045 ClpP/crotonase-like domain superfamily NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 1.7E-52 T 15-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 1.7E-52 T 15-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 1.7E-52 T 15-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 1.7E-52 T 15-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NJ56_01380 889891eddfd7ca1cea39af6d7911ca69 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 1.7E-52 T 15-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NJ56_00585 5fa64d7e3e10a22f1d972925cd0abec9 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 3.2E-19 T 15-10-2018 NJ56_00585 5fa64d7e3e10a22f1d972925cd0abec9 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 3.2E-19 T 15-10-2018 NJ56_00585 5fa64d7e3e10a22f1d972925cd0abec9 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 3.2E-19 T 15-10-2018 NJ56_00585 5fa64d7e3e10a22f1d972925cd0abec9 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 3.2E-19 T 15-10-2018 NJ56_00585 5fa64d7e3e10a22f1d972925cd0abec9 393 SUPERFAMILY SSF51905 8 384 2.13E-60 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_00585 5fa64d7e3e10a22f1d972925cd0abec9 393 Gene3D G3DSA:3.30.9.50 84 271 2.5E-105 T 15-10-2018 NJ56_00585 5fa64d7e3e10a22f1d972925cd0abec9 393 Gene3D G3DSA:3.50.50.60 9 340 2.5E-105 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_00585 5fa64d7e3e10a22f1d972925cd0abec9 393 Pfam PF01494 FAD binding domain 8 80 7.4E-6 T 15-10-2018 IPR002938 FAD-binding domain GO:0071949 NJ56_00585 5fa64d7e3e10a22f1d972925cd0abec9 393 Pfam PF01494 FAD binding domain 153 341 9.8E-21 T 15-10-2018 IPR002938 FAD-binding domain GO:0071949 NJ56_00585 5fa64d7e3e10a22f1d972925cd0abec9 393 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 9 392 1.4E-126 T 15-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 293 6.1E-26 T 15-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 Hamap MF_02029 UDP-N-acetyl-D-mannosamine dehydrogenase [wecC]. 1 420 79.905 T 15-10-2018 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC GO:0009246|GO:0089714 KEGG: 00520+1.1.1.336|MetaCyc: PWY-7335 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 189 3.5E-57 T 15-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 416 6.7E-118 T 15-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 PIRSF PIRSF500136 1 420 7.2E-147 T 15-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 SUPERFAMILY SSF51735 5 198 2.77E-44 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_05380 74cc211b11db9b639e85c93864f50623 420 Gene3D G3DSA:3.40.50.720 2 202 8.4E-63 T 15-10-2018 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 PIRSF PIRSF000124 4 419 5.4E-73 T 15-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 SUPERFAMILY SSF48179 206 298 2.04E-27 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 SMART SM00984 324 420 1.6E-27 T 15-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 324 419 2.0E-20 T 15-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 SUPERFAMILY SSF52413 311 419 8.89E-27 T 15-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 NJ56_05380 74cc211b11db9b639e85c93864f50623 420 Gene3D G3DSA:3.40.50.720 205 420 9.7E-60 T 15-10-2018 NJ56_10355 55b018016d67f1e546ec7bd3a103cc33 325 ProSitePatterns PS00760 Signal peptidases I lysine active site. 146 158 - T 15-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 NJ56_10355 55b018016d67f1e546ec7bd3a103cc33 325 ProSitePatterns PS00761 Signal peptidases I signature 3. 270 283 - T 15-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 NJ56_10355 55b018016d67f1e546ec7bd3a103cc33 325 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 156 1.4E-25 T 15-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 NJ56_10355 55b018016d67f1e546ec7bd3a103cc33 325 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 96 1.4E-25 T 15-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 NJ56_10355 55b018016d67f1e546ec7bd3a103cc33 325 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 265 284 1.4E-25 T 15-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 NJ56_10355 55b018016d67f1e546ec7bd3a103cc33 325 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 65 305 9.1E-44 T 15-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 NJ56_10355 55b018016d67f1e546ec7bd3a103cc33 325 SUPERFAMILY SSF51306 78 324 6.8E-78 T 15-10-2018 IPR036286 LexA/Signal peptidase-like superfamily NJ56_10355 55b018016d67f1e546ec7bd3a103cc33 325 Pfam PF10502 Signal peptidase, peptidase S26 263 303 4.2E-6 T 15-10-2018 IPR019533 Peptidase S26 NJ56_10355 55b018016d67f1e546ec7bd3a103cc33 325 Pfam PF00717 Peptidase S24-like 86 160 8.3E-21 T 15-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C NJ56_11015 df80df124cfc2ef4357ccd1f6afdadc5 141 Gene3D G3DSA:3.40.630.30 1 141 9.7E-45 T 15-10-2018 NJ56_11015 df80df124cfc2ef4357ccd1f6afdadc5 141 Pfam PF00583 Acetyltransferase (GNAT) family 18 123 5.2E-19 T 15-10-2018 IPR000182 GNAT domain NJ56_11015 df80df124cfc2ef4357ccd1f6afdadc5 141 Hamap MF_01127 Acetyltransferase YpeA [ypeA]. 1 141 52.285 T 15-10-2018 IPR023072 Acetyltransferase, YpeA GO:0016747 NJ56_11015 df80df124cfc2ef4357ccd1f6afdadc5 141 SUPERFAMILY SSF55729 1 130 1.03E-30 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_11015 df80df124cfc2ef4357ccd1f6afdadc5 141 PIRSF PIRSF037663 1 141 6.2E-11 T 15-10-2018 IPR017255 Acetyltransferase, GNAT, predicted NJ56_07620 293e0136e330d3e192711df3a24f8cbd 279 Pfam PF09339 IclR helix-turn-helix domain 29 79 8.4E-18 T 15-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 NJ56_07620 293e0136e330d3e192711df3a24f8cbd 279 SMART SM00346 27 117 4.0E-34 T 15-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 NJ56_07620 293e0136e330d3e192711df3a24f8cbd 279 Gene3D G3DSA:1.10.10.10 25 100 5.2E-20 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_07620 293e0136e330d3e192711df3a24f8cbd 279 SUPERFAMILY SSF55781 98 274 1.5E-50 T 15-10-2018 NJ56_07620 293e0136e330d3e192711df3a24f8cbd 279 SUPERFAMILY SSF46785 27 100 1.39E-14 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_07620 293e0136e330d3e192711df3a24f8cbd 279 Pfam PF01614 Bacterial transcriptional regulator 148 271 1.6E-39 T 15-10-2018 IPR014757 Transcription regulator IclR, C-terminal NJ56_07620 293e0136e330d3e192711df3a24f8cbd 279 Gene3D G3DSA:3.30.450.40 101 278 6.0E-67 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_10995 621b3ef2c7810addd8a1c52250023c90 192 SUPERFAMILY SSF55811 8 188 7.04E-52 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_10995 621b3ef2c7810addd8a1c52250023c90 192 Gene3D G3DSA:3.90.79.10 2 189 1.0E-59 T 15-10-2018 NJ56_10995 621b3ef2c7810addd8a1c52250023c90 192 Pfam PF00293 NUDIX domain 44 166 5.1E-11 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_10995 621b3ef2c7810addd8a1c52250023c90 192 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 8 185 1.8E-60 T 15-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 SUPERFAMILY SSF53223 7 196 3.52E-74 T 15-10-2018 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 Gene3D G3DSA:3.40.50.10860 55 190 2.1E-175 T 15-10-2018 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 9.5E-51 T 15-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 SMART SM00839 204 445 3.1E-91 T 15-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 1.3E-33 T 15-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 1.3E-33 T 15-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 1.3E-33 T 15-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 1.3E-33 T 15-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 PIRSF PIRSF000185 22 447 1.3E-115 T 15-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 SUPERFAMILY SSF51735 202 446 7.62E-74 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 Gene3D G3DSA:1.10.285.10 402 447 7.0E-10 T 15-10-2018 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 Gene3D G3DSA:1.10.285.10 14 374 2.1E-175 T 15-10-2018 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 Gene3D G3DSA:3.40.50.720 209 373 2.1E-175 T 15-10-2018 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 15-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 NJ56_06820 f597b81aa9b723d5ac623b12a30fcc72 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 7.6E-85 T 15-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 NJ56_08450 9fc6f5609e6c06fe10b3db399ed65170 396 SUPERFAMILY SSF53335 192 373 3.82E-23 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_08450 9fc6f5609e6c06fe10b3db399ed65170 396 Gene3D G3DSA:3.40.50.150 7 182 3.6E-56 T 15-10-2018 NJ56_08450 9fc6f5609e6c06fe10b3db399ed65170 396 Gene3D G3DSA:3.40.50.150 186 382 4.2E-50 T 15-10-2018 NJ56_08450 9fc6f5609e6c06fe10b3db399ed65170 396 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 1 374 50.117 T 15-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 NJ56_08450 9fc6f5609e6c06fe10b3db399ed65170 396 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 303 309 - T 15-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NJ56_08450 9fc6f5609e6c06fe10b3db399ed65170 396 Pfam PF05175 Methyltransferase small domain 200 371 1.8E-53 T 15-10-2018 IPR007848 Methyltransferase small domain GO:0008168 NJ56_08450 9fc6f5609e6c06fe10b3db399ed65170 396 PIRSF PIRSF037565 1 375 9.4E-165 T 15-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 NJ56_10850 db3c97a266408025e2f53e202faafd13 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 208 1.1E-88 T 15-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 NJ56_10850 db3c97a266408025e2f53e202faafd13 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 43.498 T 15-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 NJ56_10850 db3c97a266408025e2f53e202faafd13 208 SUPERFAMILY SSF53271 4 206 1.97E-65 T 15-10-2018 IPR029057 Phosphoribosyltransferase-like NJ56_10850 db3c97a266408025e2f53e202faafd13 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 3.1E-63 T 15-10-2018 NJ56_10850 db3c97a266408025e2f53e202faafd13 208 Gene3D G3DSA:3.40.50.2020 1 208 6.8E-71 T 15-10-2018 NJ56_17035 8eb4bad62ebadb735f75c9383e881924 649 SMART SM00382 33 220 7.9E-16 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17035 8eb4bad62ebadb735f75c9383e881924 649 Gene3D G3DSA:3.40.50.300 1 273 2.2E-70 T 15-10-2018 NJ56_17035 8eb4bad62ebadb735f75c9383e881924 649 Pfam PF12704 MacB-like periplasmic core domain 273 491 2.1E-38 T 15-10-2018 IPR025857 MacB-like periplasmic core domain NJ56_17035 8eb4bad62ebadb735f75c9383e881924 649 SUPERFAMILY SSF52540 4 225 3.25E-69 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17035 8eb4bad62ebadb735f75c9383e881924 649 Pfam PF00005 ABC transporter 24 172 1.6E-30 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_17035 8eb4bad62ebadb735f75c9383e881924 649 Pfam PF02687 FtsX-like permease family 554 642 1.1E-10 T 15-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 NJ56_17035 8eb4bad62ebadb735f75c9383e881924 649 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_12015 b0c8305ef507792369a33e56cb70d08c 362 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 32 38 - T 15-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NJ56_12015 b0c8305ef507792369a33e56cb70d08c 362 SUPERFAMILY SSF53335 7 344 8.54E-58 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_12015 b0c8305ef507792369a33e56cb70d08c 362 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 28 42 1.3E-25 T 15-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NJ56_12015 b0c8305ef507792369a33e56cb70d08c 362 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 324 344 1.3E-25 T 15-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NJ56_12015 b0c8305ef507792369a33e56cb70d08c 362 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 282 299 1.3E-25 T 15-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NJ56_12015 b0c8305ef507792369a33e56cb70d08c 362 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 63 83 1.3E-25 T 15-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NJ56_12015 b0c8305ef507792369a33e56cb70d08c 362 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 301 319 1.3E-25 T 15-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NJ56_12015 b0c8305ef507792369a33e56cb70d08c 362 Pfam PF01555 DNA methylase 29 339 2.4E-40 T 15-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 NJ56_04480 530a8f16ced0175c2f80f2e97c608af1 134 TIGRFAM TIGR03751 conj_TIGR03751: conjugative transfer region lipoprotein, TIGR03751 family 9 131 7.4E-53 T 15-10-2018 IPR022262 Lipoprotein, putative NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 7.5E-24 T 15-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 SMART SM00662 23 234 1.4E-105 T 15-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 5.8E-113 T 15-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 SUPERFAMILY SSF47789 251 325 1.27E-25 T 15-10-2018 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 SUPERFAMILY SSF55257 6 231 1.57E-30 T 15-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 15-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.627 T 15-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 SUPERFAMILY SSF56553 53 178 2.09E-41 T 15-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 Gene3D G3DSA:2.170.120.12 53 177 4.1E-86 T 15-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 3.9E-24 T 15-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 Gene3D G3DSA:1.10.150.20 244 329 9.7E-39 T 15-10-2018 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 Gene3D G3DSA:3.30.1360.10 17 228 4.1E-86 T 15-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_07490 168dd33bfe0eb11c2695cc766dc93037 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 1.7E-23 T 15-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 SUPERFAMILY SSF52922 533 664 3.27E-44 T 15-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 SMART SM00861 355 525 2.4E-68 T 15-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 Gene3D G3DSA:3.40.50.970 1 326 4.9E-136 T 15-10-2018 NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 Pfam PF02780 Transketolase, C-terminal domain 541 655 1.3E-18 T 15-10-2018 IPR033248 Transketolase, C-terminal domain NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 Pfam PF02779 Transketolase, pyrimidine binding domain 355 524 1.3E-46 T 15-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 SUPERFAMILY SSF52518 5 330 1.77E-121 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 Gene3D G3DSA:3.40.50.970 327 537 2.5E-85 T 15-10-2018 NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 2.2E-170 T 15-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 15-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 SUPERFAMILY SSF52518 332 526 4.91E-70 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 Gene3D G3DSA:3.40.50.920 538 664 8.2E-43 T 15-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 15-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 NJ56_09190 f7b2efc4226af68745036070b9b89cb5 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 15-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 NJ56_02545 2849940af38e17e99e22b6bde3ff193e 540 ProSitePatterns PS00080 Multicopper oxidases signature 2. 521 532 - T 15-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 NJ56_02545 2849940af38e17e99e22b6bde3ff193e 540 Gene3D G3DSA:2.60.40.420 176 326 1.9E-44 T 15-10-2018 IPR008972 Cupredoxin NJ56_02545 2849940af38e17e99e22b6bde3ff193e 540 SUPERFAMILY SSF49503 423 538 1.27E-27 T 15-10-2018 IPR008972 Cupredoxin NJ56_02545 2849940af38e17e99e22b6bde3ff193e 540 SUPERFAMILY SSF49503 173 291 1.51E-32 T 15-10-2018 IPR008972 Cupredoxin NJ56_02545 2849940af38e17e99e22b6bde3ff193e 540 SUPERFAMILY SSF49503 34 168 1.16E-33 T 15-10-2018 IPR008972 Cupredoxin NJ56_02545 2849940af38e17e99e22b6bde3ff193e 540 Gene3D G3DSA:2.60.40.420 346 539 4.0E-49 T 15-10-2018 IPR008972 Cupredoxin NJ56_02545 2849940af38e17e99e22b6bde3ff193e 540 Pfam PF07732 Multicopper oxidase 62 167 2.2E-31 T 15-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 NJ56_02545 2849940af38e17e99e22b6bde3ff193e 540 Gene3D G3DSA:2.60.40.420 30 175 2.8E-45 T 15-10-2018 IPR008972 Cupredoxin NJ56_02545 2849940af38e17e99e22b6bde3ff193e 540 Pfam PF00394 Multicopper oxidase 174 290 1.4E-7 T 15-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 NJ56_02545 2849940af38e17e99e22b6bde3ff193e 540 Pfam PF07731 Multicopper oxidase 423 539 4.6E-26 T 15-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 NJ56_15300 561fafbabab6a941c4af4cb8d181ec1b 520 PIRSF PIRSF001373 1 520 5.1E-250 T 15-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_15300 561fafbabab6a941c4af4cb8d181ec1b 520 Pfam PF04715 Anthranilate synthase component I, N terminal region 19 192 7.9E-17 T 15-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_15300 561fafbabab6a941c4af4cb8d181ec1b 520 PRINTS PR00095 Anthranilate synthase component I signature 364 377 1.7E-24 T 15-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_15300 561fafbabab6a941c4af4cb8d181ec1b 520 PRINTS PR00095 Anthranilate synthase component I signature 350 363 1.7E-24 T 15-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_15300 561fafbabab6a941c4af4cb8d181ec1b 520 PRINTS PR00095 Anthranilate synthase component I signature 444 458 1.7E-24 T 15-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_15300 561fafbabab6a941c4af4cb8d181ec1b 520 PRINTS PR00095 Anthranilate synthase component I signature 459 473 1.7E-24 T 15-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_15300 561fafbabab6a941c4af4cb8d181ec1b 520 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 17 514 7.3E-241 T 15-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_15300 561fafbabab6a941c4af4cb8d181ec1b 520 Gene3D G3DSA:3.60.120.10 1 520 1.1E-194 T 15-10-2018 IPR005801 ADC synthase GO:0009058 NJ56_15300 561fafbabab6a941c4af4cb8d181ec1b 520 SUPERFAMILY SSF56322 10 515 2.35E-164 T 15-10-2018 IPR005801 ADC synthase GO:0009058 NJ56_15300 561fafbabab6a941c4af4cb8d181ec1b 520 Pfam PF00425 chorismate binding enzyme 242 502 1.3E-83 T 15-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 SUPERFAMILY SSF51905 1 338 1.73E-57 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 456 2.2E-35 T 15-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 459 2.6E-148 T 15-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 329 9.8E-63 T 15-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 Gene3D G3DSA:3.30.390.30 347 468 1.6E-45 T 15-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 Gene3D G3DSA:3.50.50.60 151 272 1.4E-124 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PIRSF PIRSF000350 1 469 4.4E-87 T 15-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 43 53 - T 15-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 SUPERFAMILY SSF55424 347 467 6.7E-39 T 15-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 1.3E-68 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 1.3E-68 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 280 1.3E-68 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 309 316 1.3E-68 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 1.3E-68 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 1.3E-68 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 1.3E-68 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 42 57 1.3E-68 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 1.3E-68 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 Gene3D G3DSA:3.50.50.60 10 333 1.4E-124 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 5.2E-41 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 5.2E-41 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 281 5.2E-41 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 316 5.2E-41 T 15-10-2018 NJ56_02585 5e6b0f3a994a6ce6e4f6d8e890d7c7f5 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 5.2E-41 T 15-10-2018 NJ56_07285 05ff3b465181989c41c56332090eb413 67 Pfam PF09526 Probable metal-binding protein (DUF2387) 4 58 2.1E-20 T 15-10-2018 IPR012658 Conserved hypothetical protein CHP02443 NJ56_07285 05ff3b465181989c41c56332090eb413 67 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 4 61 1.2E-30 T 15-10-2018 IPR012658 Conserved hypothetical protein CHP02443 NJ56_16750 949081e3d455f10b15f30a11f6828ed5 590 Pfam PF13654 AAA domain 144 329 1.4E-25 T 15-10-2018 NJ56_16750 949081e3d455f10b15f30a11f6828ed5 590 SUPERFAMILY SSF54211 355 546 6.83E-34 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_16750 949081e3d455f10b15f30a11f6828ed5 590 Gene3D G3DSA:3.40.50.300 75 243 2.4E-14 T 15-10-2018 NJ56_16750 949081e3d455f10b15f30a11f6828ed5 590 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 438 457 5.7E-11 T 15-10-2018 NJ56_16750 949081e3d455f10b15f30a11f6828ed5 590 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 355 371 5.7E-11 T 15-10-2018 NJ56_16750 949081e3d455f10b15f30a11f6828ed5 590 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 468 487 5.7E-11 T 15-10-2018 NJ56_16750 949081e3d455f10b15f30a11f6828ed5 590 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 498 516 5.7E-11 T 15-10-2018 NJ56_16750 949081e3d455f10b15f30a11f6828ed5 590 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 441 523 7.1E-10 T 15-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 NJ56_16750 949081e3d455f10b15f30a11f6828ed5 590 Gene3D G3DSA:3.30.230.10 331 572 7.6E-95 T 15-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NJ56_09905 eeff839225dff275e454d03d805a4dcc 372 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 136 208 9.8E-12 T 15-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 NJ56_09905 eeff839225dff275e454d03d805a4dcc 372 Pfam PF00588 SpoU rRNA Methylase family 225 362 3.9E-32 T 15-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 NJ56_09905 eeff839225dff275e454d03d805a4dcc 372 SMART SM00967 135 210 9.2E-9 T 15-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 NJ56_09905 eeff839225dff275e454d03d805a4dcc 372 SUPERFAMILY SSF75217 216 369 2.29E-40 T 15-10-2018 IPR029028 Alpha/beta knot methyltransferases NJ56_09905 eeff839225dff275e454d03d805a4dcc 372 PIRSF PIRSF006280 1 371 1.4E-179 T 15-10-2018 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted GO:0008168 NJ56_09905 eeff839225dff275e454d03d805a4dcc 372 Gene3D G3DSA:3.40.1280.10 202 372 6.4E-41 T 15-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NJ56_09905 eeff839225dff275e454d03d805a4dcc 372 SUPERFAMILY SSF55315 128 205 1.77E-9 T 15-10-2018 IPR029064 50S ribosomal protein L30e-like NJ56_16025 66caf1ba5ed9e8b6d0f16bfb9cd5c038 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 41.201 T 15-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 NJ56_16025 66caf1ba5ed9e8b6d0f16bfb9cd5c038 360 SMART SM00937 63 178 2.4E-70 T 15-10-2018 IPR005139 Peptide chain release factor GO:0006415 NJ56_16025 66caf1ba5ed9e8b6d0f16bfb9cd5c038 360 Pfam PF03462 PCRF domain 12 203 1.7E-76 T 15-10-2018 IPR005139 Peptide chain release factor GO:0006415 NJ56_16025 66caf1ba5ed9e8b6d0f16bfb9cd5c038 360 Gene3D G3DSA:3.30.160.20 210 297 3.0E-94 T 15-10-2018 NJ56_16025 66caf1ba5ed9e8b6d0f16bfb9cd5c038 360 Gene3D G3DSA:1.20.58.410 2 101 8.0E-7 T 15-10-2018 NJ56_16025 66caf1ba5ed9e8b6d0f16bfb9cd5c038 360 Gene3D G3DSA:3.30.70.1660 111 342 3.0E-94 T 15-10-2018 NJ56_16025 66caf1ba5ed9e8b6d0f16bfb9cd5c038 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 15-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 NJ56_16025 66caf1ba5ed9e8b6d0f16bfb9cd5c038 360 SUPERFAMILY SSF75620 12 353 3.27E-136 T 15-10-2018 NJ56_16025 66caf1ba5ed9e8b6d0f16bfb9cd5c038 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 4.4E-173 T 15-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 NJ56_16025 66caf1ba5ed9e8b6d0f16bfb9cd5c038 360 Pfam PF00472 RF-1 domain 216 321 1.1E-39 T 15-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 NJ56_00440 d5bb43b03dd3a6e5487b724030c98cbd 562 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 558 35.217 T 15-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 NJ56_00440 d5bb43b03dd3a6e5487b724030c98cbd 562 Pfam PF03814 Potassium-transporting ATPase A subunit 12 556 1.5E-241 T 15-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 NJ56_00440 d5bb43b03dd3a6e5487b724030c98cbd 562 PIRSF PIRSF001294 1 560 4.8E-240 T 15-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 NJ56_00440 d5bb43b03dd3a6e5487b724030c98cbd 562 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 557 3.3E-260 T 15-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 NJ56_11535 5ae0928d6de2665195a822467ec74a0b 241 Hamap MF_02022 Cell division protein DedD [dedD]. 14 239 25.561 T 15-10-2018 IPR032898 Cell division protein DedD GO:0030428|GO:0032506 NJ56_11535 5ae0928d6de2665195a822467ec74a0b 241 Gene3D G3DSA:3.30.70.1070 156 235 2.6E-6 T 15-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 NJ56_11535 5ae0928d6de2665195a822467ec74a0b 241 SUPERFAMILY SSF110997 161 234 1.03E-12 T 15-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 NJ56_11535 5ae0928d6de2665195a822467ec74a0b 241 Pfam PF05036 Sporulation related domain 161 234 1.5E-10 T 15-10-2018 IPR007730 Sporulation-like domain GO:0042834 NJ56_05355 e0dfd6107d93136d21de30aca27961ea 421 Pfam PF01943 Polysaccharide biosynthesis protein 4 283 5.6E-13 T 15-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 NJ56_05355 e0dfd6107d93136d21de30aca27961ea 421 Hamap MF_02024 Lipid III flippase [wzxE]. 1 416 39.82 T 15-10-2018 IPR032896 Lipid III flippase WzxE GO:0005886|GO:0009246 NJ56_13280 271b2fc5590af36bb43b380560200a1d 205 Pfam PF09684 Phage tail protein (Tail_P2_I) 7 143 1.2E-49 T 15-10-2018 IPR006521 Tail protein I NJ56_13280 271b2fc5590af36bb43b380560200a1d 205 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 7 143 8.0E-62 T 15-10-2018 IPR006521 Tail protein I NJ56_15755 b619a53ffae4ce6e0b49ed20d88dd505 562 Gene3D G3DSA:3.30.300.310 456 559 2.9E-30 T 15-10-2018 NJ56_15755 b619a53ffae4ce6e0b49ed20d88dd505 562 Pfam PF00501 AMP-binding enzyme 29 460 3.2E-110 T 15-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 NJ56_15755 b619a53ffae4ce6e0b49ed20d88dd505 562 SUPERFAMILY SSF56801 17 553 2.49E-151 T 15-10-2018 NJ56_15755 b619a53ffae4ce6e0b49ed20d88dd505 562 Gene3D G3DSA:3.40.50.12780 12 451 1.8E-118 T 15-10-2018 NJ56_15755 b619a53ffae4ce6e0b49ed20d88dd505 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 15-10-2018 IPR020845 AMP-binding, conserved site NJ56_15755 b619a53ffae4ce6e0b49ed20d88dd505 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 469 543 1.8E-17 T 15-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain NJ56_18215 9cd955ba893bc01dcf04f22077ed0ef0 455 Pfam PF06122 Conjugative relaxosome accessory transposon protein 30 377 9.9E-109 T 15-10-2018 IPR010927 Type IV conjugative transfer system protein TraH NJ56_15210 5d412453bbd07c6d819902f8d7c19c7b 100 Gene3D G3DSA:1.10.1220.10 1 49 1.4E-6 T 15-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 NJ56_15210 5d412453bbd07c6d819902f8d7c19c7b 100 SUPERFAMILY SSF47598 3 44 2.74E-8 T 15-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 NJ56_11090 a55b4d80bdde0a9e069fc2b0d791ed2e 225 SUPERFAMILY SSF51366 11 222 9.89E-52 T 15-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 NJ56_11090 a55b4d80bdde0a9e069fc2b0d791ed2e 225 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 33 223 4.4E-81 T 15-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 NJ56_11090 a55b4d80bdde0a9e069fc2b0d791ed2e 225 Gene3D G3DSA:3.20.20.70 3 225 1.5E-87 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_11090 a55b4d80bdde0a9e069fc2b0d791ed2e 225 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 9 223 37.597 T 15-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 NJ56_13260 33294584a95897eeb134e49ea1b5e92d 171 Pfam PF04985 Phage tail tube protein FII 4 170 2.3E-68 T 15-10-2018 IPR006498 Tail tube protein NJ56_13260 33294584a95897eeb134e49ea1b5e92d 171 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 3 170 2.8E-53 T 15-10-2018 IPR006498 Tail tube protein NJ56_02740 0a85af27d60fdfec8966d4c75fce8d15 490 Pfam PF02875 Mur ligase family, glutamate ligase domain 334 419 4.7E-26 T 15-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 NJ56_02740 0a85af27d60fdfec8966d4c75fce8d15 490 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 17 486 8.9E-165 T 15-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 NJ56_02740 0a85af27d60fdfec8966d4c75fce8d15 490 SUPERFAMILY SSF53623 100 333 8.11E-76 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_02740 0a85af27d60fdfec8966d4c75fce8d15 490 Pfam PF01225 Mur ligase family, catalytic domain 20 97 2.2E-12 T 15-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 NJ56_02740 0a85af27d60fdfec8966d4c75fce8d15 490 SUPERFAMILY SSF63418 1 98 6.54E-24 T 15-10-2018 IPR035911 MurE/MurF, N-terminal NJ56_02740 0a85af27d60fdfec8966d4c75fce8d15 490 Gene3D G3DSA:3.90.190.20 337 489 2.0E-55 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_02740 0a85af27d60fdfec8966d4c75fce8d15 490 Gene3D G3DSA:3.40.1190.10 100 336 5.2E-87 T 15-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 NJ56_02740 0a85af27d60fdfec8966d4c75fce8d15 490 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 2 486 33.933 T 15-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 NJ56_02740 0a85af27d60fdfec8966d4c75fce8d15 490 SUPERFAMILY SSF53244 334 486 1.37E-51 T 15-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 NJ56_02740 0a85af27d60fdfec8966d4c75fce8d15 490 Gene3D G3DSA:3.40.1390.10 1 99 8.4E-32 T 15-10-2018 NJ56_02740 0a85af27d60fdfec8966d4c75fce8d15 490 Pfam PF08245 Mur ligase middle domain 109 312 2.4E-48 T 15-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 NJ56_04230 0f425df51d245b4e60e91edfe9e92faf 197 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 28 193 5.5E-34 T 15-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal NJ56_04230 0f425df51d245b4e60e91edfe9e92faf 197 SUPERFAMILY SSF81296 28 195 1.4E-61 T 15-10-2018 IPR014756 Immunoglobulin E-set NJ56_04230 0f425df51d245b4e60e91edfe9e92faf 197 Gene3D G3DSA:2.70.50.50 28 196 1.6E-70 T 15-10-2018 NJ56_06455 0bc83f292d8daf1e0f2ae4f2f088653a 747 Pfam PF00030 Beta/Gamma crystallin 64 147 2.4E-5 T 15-10-2018 IPR001064 Beta/gamma crystallin NJ56_06455 0bc83f292d8daf1e0f2ae4f2f088653a 747 SUPERFAMILY SSF49695 63 147 1.64E-12 T 15-10-2018 IPR011024 Gamma-crystallin-like NJ56_06455 0bc83f292d8daf1e0f2ae4f2f088653a 747 Gene3D G3DSA:2.60.20.10 49 149 1.7E-22 T 15-10-2018 NJ56_06455 0bc83f292d8daf1e0f2ae4f2f088653a 747 SUPERFAMILY SSF55729 651 744 3.8E-5 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_10335 8f35ebe20e46850548483a3531c35c6c 217 Gene3D G3DSA:1.10.10.880 1 66 1.3E-26 T 15-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 NJ56_10335 8f35ebe20e46850548483a3531c35c6c 217 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 87 1.3E-34 T 15-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 NJ56_10335 8f35ebe20e46850548483a3531c35c6c 217 SUPERFAMILY SSF89069 1 66 2.22E-20 T 15-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 NJ56_10335 8f35ebe20e46850548483a3531c35c6c 217 PIRSF PIRSF016938 1 205 9.8E-34 T 15-10-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0016989 NJ56_10335 8f35ebe20e46850548483a3531c35c6c 217 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 132 186 1.8E-20 T 15-10-2018 IPR005573 Anti sigma-E protein RseA, C-terminal NJ56_00490 67f79b2833061e7024149c86b2040ab1 550 SUPERFAMILY SSF58104 244 518 2.35E-71 T 15-10-2018 NJ56_00490 67f79b2833061e7024149c86b2040ab1 550 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 15-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site NJ56_00490 67f79b2833061e7024149c86b2040ab1 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 4.0E-63 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_00490 67f79b2833061e7024149c86b2040ab1 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 4.0E-63 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_00490 67f79b2833061e7024149c86b2040ab1 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 4.0E-63 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_00490 67f79b2833061e7024149c86b2040ab1 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 4 29 4.0E-63 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_00490 67f79b2833061e7024149c86b2040ab1 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 4.0E-63 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_00490 67f79b2833061e7024149c86b2040ab1 550 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 484 4.8E-55 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_00490 67f79b2833061e7024149c86b2040ab1 550 Gene3D G3DSA:1.10.287.950 215 518 1.6E-90 T 15-10-2018 NJ56_00490 67f79b2833061e7024149c86b2040ab1 550 SMART SM00283 269 516 3.5E-93 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_10645 235c72a55b4a17db7804efd629a13e20 459 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 7 443 30.156 T 15-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 NJ56_10645 235c72a55b4a17db7804efd629a13e20 459 Pfam PF13742 OB-fold nucleic acid binding domain 10 103 7.0E-32 T 15-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 NJ56_10645 235c72a55b4a17db7804efd629a13e20 459 Pfam PF02601 Exonuclease VII, large subunit 126 440 9.5E-101 T 15-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 NJ56_10645 235c72a55b4a17db7804efd629a13e20 459 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 11 355 6.9E-136 T 15-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 NJ56_09020 aa75699728fcd2666e9df04884abf129 321 Pfam PF07663 Sorbitol phosphotransferase enzyme II C-terminus 228 320 2.5E-42 T 15-10-2018 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 NJ56_09020 aa75699728fcd2666e9df04884abf129 321 TIGRFAM TIGR00825 EIIBC-GUT: PTS system, glucitol/sorbitol-specific, IIBC component 4 321 5.3E-179 T 15-10-2018 IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 NJ56_09020 aa75699728fcd2666e9df04884abf129 321 Pfam PF03612 Sorbitol phosphotransferase enzyme II N-terminus 5 173 1.5E-68 T 15-10-2018 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 NJ56_10260 36f1d731a93418f5177710b6c7d4d069 184 Gene3D G3DSA:3.30.530.20 38 180 3.4E-40 T 15-10-2018 IPR023393 START-like domain superfamily NJ56_10260 36f1d731a93418f5177710b6c7d4d069 184 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 46 171 2.8E-31 T 15-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 NJ56_10260 36f1d731a93418f5177710b6c7d4d069 184 SUPERFAMILY SSF55961 37 178 2.12E-34 T 15-10-2018 NJ56_14785 d9ad6971997fc4f398ade946d820adb3 297 Pfam PF01171 PP-loop family 41 203 1.2E-14 T 15-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 NJ56_14785 d9ad6971997fc4f398ade946d820adb3 297 PIRSF PIRSF004976 2 279 5.9E-70 T 15-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 NJ56_14785 d9ad6971997fc4f398ade946d820adb3 297 Gene3D G3DSA:3.40.50.620 2 265 2.8E-48 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_14785 d9ad6971997fc4f398ade946d820adb3 297 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 8 269 55.42 T 15-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 NJ56_14785 d9ad6971997fc4f398ade946d820adb3 297 SUPERFAMILY SSF52402 15 232 2.79E-53 T 15-10-2018 NJ56_01065 1c4eaa889aba5b419a37663f72e0df64 268 Pfam PF01963 TraB family 35 265 2.6E-36 T 15-10-2018 IPR002816 Pheromone shutdown, TraB NJ56_08145 cc6c174d7906580ed7f2d5fb24f4160c 283 SUPERFAMILY SSF52540 2 151 1.98E-12 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_08145 cc6c174d7906580ed7f2d5fb24f4160c 283 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 281 40.816 T 15-10-2018 IPR005337 RapZ-like family GO:0005524 NJ56_08145 cc6c174d7906580ed7f2d5fb24f4160c 283 PIRSF PIRSF005052 1 283 1.8E-113 T 15-10-2018 IPR005337 RapZ-like family GO:0005524 NJ56_08145 cc6c174d7906580ed7f2d5fb24f4160c 283 Pfam PF03668 P-loop ATPase protein family 1 282 2.8E-142 T 15-10-2018 IPR005337 RapZ-like family GO:0005524 NJ56_11250 878be03b65496fef3880c0073d277ee8 105 Pfam PF10697 Protein of unknown function (DUF2502) 9 96 5.9E-32 T 15-10-2018 IPR019638 Protein of unknown function DUF2502 NJ56_10385 e82a0de1a07be877dc4f00143bad6041 86 SUPERFAMILY SSF54862 5 64 1.73E-16 T 15-10-2018 NJ56_10385 e82a0de1a07be877dc4f00143bad6041 86 Pfam PF12838 4Fe-4S dicluster domain 8 56 9.3E-7 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_10385 e82a0de1a07be877dc4f00143bad6041 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_10385 e82a0de1a07be877dc4f00143bad6041 86 Gene3D G3DSA:3.30.70.20 2 86 2.1E-34 T 15-10-2018 NJ56_13540 56ee990368cf9b1f21ba7312a3ccecea 128 Gene3D G3DSA:3.30.420.10 11 126 6.2E-8 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_13540 56ee990368cf9b1f21ba7312a3ccecea 128 SUPERFAMILY SSF53098 7 121 1.34E-25 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_13540 56ee990368cf9b1f21ba7312a3ccecea 128 Pfam PF00665 Integrase core domain 13 115 1.2E-17 T 15-10-2018 IPR001584 Integrase, catalytic core GO:0015074 NJ56_13040 eadd5c4867c2a5e0c06bbb60159783b6 454 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 161 372 4.8E-71 T 15-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_13040 eadd5c4867c2a5e0c06bbb60159783b6 454 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 7 452 2.9E-190 T 15-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_13040 eadd5c4867c2a5e0c06bbb60159783b6 454 SMART SM00382 173 356 5.8E-8 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_13040 eadd5c4867c2a5e0c06bbb60159783b6 454 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 363 372 - T 15-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_13040 eadd5c4867c2a5e0c06bbb60159783b6 454 SUPERFAMILY SSF52540 108 378 8.52E-92 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_13040 eadd5c4867c2a5e0c06bbb60159783b6 454 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 29 450 1.8E-197 T 15-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 NJ56_13040 eadd5c4867c2a5e0c06bbb60159783b6 454 Gene3D G3DSA:3.40.50.12240 20 454 4.7E-168 T 15-10-2018 NJ56_06175 8872135d21a36ca18374265d555fe0c4 139 Pfam PF05025 RbsD / FucU transport protein family 1 138 3.1E-49 T 15-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 NJ56_06175 8872135d21a36ca18374265d555fe0c4 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 33.074 T 15-10-2018 IPR023064 D-ribose pyranase GO:0016872 NJ56_06175 8872135d21a36ca18374265d555fe0c4 139 Gene3D G3DSA:3.40.1650.10 8 136 7.7E-39 T 15-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 NJ56_06175 8872135d21a36ca18374265d555fe0c4 139 SUPERFAMILY SSF102546 1 139 9.42E-46 T 15-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 NJ56_11570 c38ae3d366577b88eb4b4d7287f52d43 261 Gene3D G3DSA:3.40.50.300 5 260 2.5E-84 T 15-10-2018 NJ56_11570 c38ae3d366577b88eb4b4d7287f52d43 261 SUPERFAMILY SSF52540 10 255 8.99E-74 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_11570 c38ae3d366577b88eb4b4d7287f52d43 261 Pfam PF00005 ABC transporter 25 185 2.4E-33 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_11570 c38ae3d366577b88eb4b4d7287f52d43 261 SMART SM00382 34 233 6.4E-15 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_11570 c38ae3d366577b88eb4b4d7287f52d43 261 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_11570 c38ae3d366577b88eb4b4d7287f52d43 261 PIRSF PIRSF039085 6 261 1.7E-119 T 15-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 NJ56_08775 40f55baff0ff06ef7f355ca16c92447c 477 SUPERFAMILY SSF49503 3 167 3.76E-24 T 15-10-2018 IPR008972 Cupredoxin NJ56_08775 40f55baff0ff06ef7f355ca16c92447c 477 SUPERFAMILY SSF49503 316 468 1.65E-17 T 15-10-2018 IPR008972 Cupredoxin NJ56_08775 40f55baff0ff06ef7f355ca16c92447c 477 SUPERFAMILY SSF49503 174 293 2.23E-31 T 15-10-2018 IPR008972 Cupredoxin NJ56_08775 40f55baff0ff06ef7f355ca16c92447c 477 Pfam PF07732 Multicopper oxidase 61 168 1.8E-25 T 15-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 NJ56_08775 40f55baff0ff06ef7f355ca16c92447c 477 Gene3D G3DSA:2.60.40.420 167 347 6.0E-55 T 15-10-2018 IPR008972 Cupredoxin NJ56_08775 40f55baff0ff06ef7f355ca16c92447c 477 Pfam PF07731 Multicopper oxidase 360 470 1.7E-13 T 15-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 NJ56_08775 40f55baff0ff06ef7f355ca16c92447c 477 Gene3D G3DSA:2.60.40.420 348 475 4.1E-24 T 15-10-2018 IPR008972 Cupredoxin NJ56_08775 40f55baff0ff06ef7f355ca16c92447c 477 Gene3D G3DSA:2.60.40.420 30 166 1.1E-31 T 15-10-2018 IPR008972 Cupredoxin NJ56_08775 40f55baff0ff06ef7f355ca16c92447c 477 Hamap MF_00915 Cell division protein FtsP [ftsP]. 1 470 58.547 T 15-10-2018 IPR026589 Cell division protein FtsP GO:0043093 NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 SUPERFAMILY SSF102735 1 131 1.1E-41 T 15-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 SUPERFAMILY SSF109998 248 429 1.83E-48 T 15-10-2018 IPR027304 Trigger factor/SurA domain superfamily NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 TIGRFAM TIGR00115 tig: trigger factor 13 412 2.0E-145 T 15-10-2018 IPR005215 Trigger factor GO:0015031 NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 Gene3D G3DSA:1.10.3120.10 116 417 4.1E-113 T 15-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 PIRSF PIRSF003095 1 434 6.9E-131 T 15-10-2018 IPR005215 Trigger factor GO:0015031 NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 Gene3D G3DSA:3.10.50.40 150 246 4.1E-113 T 15-10-2018 NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 SUPERFAMILY SSF54534 91 241 5.3E-38 T 15-10-2018 NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 412 1.2E-40 T 15-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 Gene3D G3DSA:3.30.70.1050 1 115 1.3E-43 T 15-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 232 2.1E-14 T 15-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 7.7E-45 T 15-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 NJ56_01385 a899ed52283eb90a3ee3d1307208e1d2 434 Hamap MF_00303 Trigger factor [tig]. 1 418 22.203 T 15-10-2018 IPR005215 Trigger factor GO:0015031 NJ56_09370 71fcd9ad5f14d20735a9639f9da821cf 139 SUPERFAMILY SSF46894 42 118 3.51E-5 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_09370 71fcd9ad5f14d20735a9639f9da821cf 139 Gene3D G3DSA:1.10.10.10 25 122 1.7E-6 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_13060 b4f80726d342f53fc654c92c0188641d 104 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 3 103 5.0E-28 T 15-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NJ56_13060 b4f80726d342f53fc654c92c0188641d 104 Pfam PF02049 Flagellar hook-basal body complex protein FliE 21 104 1.2E-27 T 15-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NJ56_13060 b4f80726d342f53fc654c92c0188641d 104 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 4 104 18.046 T 15-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NJ56_13060 b4f80726d342f53fc654c92c0188641d 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 68 84 1.6E-17 T 15-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NJ56_13060 b4f80726d342f53fc654c92c0188641d 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 89 102 1.6E-17 T 15-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NJ56_13060 b4f80726d342f53fc654c92c0188641d 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 33 49 1.6E-17 T 15-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NJ56_05985 12637d0dbc385a574c111e4baf8e8ab1 569 Gene3D G3DSA:2.40.50.140 315 387 6.0E-13 T 15-10-2018 NJ56_05985 12637d0dbc385a574c111e4baf8e8ab1 569 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 328 343 - T 15-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site NJ56_05985 12637d0dbc385a574c111e4baf8e8ab1 569 SUPERFAMILY SSF47781 397 564 2.09E-20 T 15-10-2018 IPR010994 RuvA domain 2-like NJ56_05985 12637d0dbc385a574c111e4baf8e8ab1 569 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 319 392 1.5E-17 T 15-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 NJ56_05985 12637d0dbc385a574c111e4baf8e8ab1 569 SMART SM00532 31 434 4.1E-39 T 15-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 NJ56_05985 12637d0dbc385a574c111e4baf8e8ab1 569 Gene3D G3DSA:3.30.470.90 95 314 9.2E-30 T 15-10-2018 NJ56_05985 12637d0dbc385a574c111e4baf8e8ab1 569 Hamap MF_01587 DNA ligase B [ligB]. 3 565 50.333 T 15-10-2018 IPR020923 DNA ligase B GO:0003911|GO:0006259 NJ56_05985 12637d0dbc385a574c111e4baf8e8ab1 569 SUPERFAMILY SSF50249 316 396 1.35E-17 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_05985 12637d0dbc385a574c111e4baf8e8ab1 569 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 33 314 5.9E-23 T 15-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 NJ56_05985 12637d0dbc385a574c111e4baf8e8ab1 569 SUPERFAMILY SSF56091 27 313 1.36E-63 T 15-10-2018 NJ56_18080 ebab35359d05448696816fd07b881584 243 Pfam PF06952 PsiA protein 1 236 2.7E-57 T 15-10-2018 IPR009713 Uncharacterised protein family PsiA NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 4 251 3.8E-132 T 15-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 3.9E-15 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.9E-15 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 3.9E-15 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 15-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 Gene3D G3DSA:3.40.50.720 1 251 4.0E-82 T 15-10-2018 NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.4E-43 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.4E-43 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.4E-43 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.4E-43 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.4E-43 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.4E-43 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 SUPERFAMILY SSF51735 3 250 1.25E-78 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_03305 d39ccb0cb4f16b7429f5d6be132ad440 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 248 2.5E-59 T 15-10-2018 NJ56_13485 f1e93c58e4888c3f346ff8d3bcc40f5c 274 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 6.9E-15 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_13485 f1e93c58e4888c3f346ff8d3bcc40f5c 274 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 6.9E-15 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_13485 f1e93c58e4888c3f346ff8d3bcc40f5c 274 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 6.9E-15 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_13485 f1e93c58e4888c3f346ff8d3bcc40f5c 274 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 6.9E-15 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_13485 f1e93c58e4888c3f346ff8d3bcc40f5c 274 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 267 5.6E-86 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_13485 f1e93c58e4888c3f346ff8d3bcc40f5c 274 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 15-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NJ56_13485 f1e93c58e4888c3f346ff8d3bcc40f5c 274 PIRSF PIRSF000398 1 272 3.5E-64 T 15-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 NJ56_13485 f1e93c58e4888c3f346ff8d3bcc40f5c 274 Gene3D G3DSA:3.40.50.150 8 237 6.6E-78 T 15-10-2018 NJ56_13485 f1e93c58e4888c3f346ff8d3bcc40f5c 274 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 251 3.0E-61 T 15-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 NJ56_13485 f1e93c58e4888c3f346ff8d3bcc40f5c 274 SUPERFAMILY SSF53335 4 267 7.32E-73 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_13485 f1e93c58e4888c3f346ff8d3bcc40f5c 274 Gene3D G3DSA:1.10.1020.10 57 156 6.6E-78 T 15-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 NJ56_16495 a1dbb0a014c6ab0215527e53def0430d 270 Pfam PF01026 TatD related DNase 4 255 6.9E-76 T 15-10-2018 IPR001130 TatD family GO:0016788 NJ56_16495 a1dbb0a014c6ab0215527e53def0430d 270 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 15-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 NJ56_16495 a1dbb0a014c6ab0215527e53def0430d 270 SUPERFAMILY SSF51556 1 257 1.3E-85 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_16495 a1dbb0a014c6ab0215527e53def0430d 270 Gene3D G3DSA:3.20.20.140 1 263 1.6E-98 T 15-10-2018 NJ56_16495 a1dbb0a014c6ab0215527e53def0430d 270 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 15-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 NJ56_16495 a1dbb0a014c6ab0215527e53def0430d 270 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 256 3.5E-90 T 15-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 NJ56_16495 a1dbb0a014c6ab0215527e53def0430d 270 PIRSF PIRSF005902 1 258 1.2E-73 T 15-10-2018 IPR001130 TatD family GO:0016788 NJ56_00760 48852e6859d092d36c921cb65a6db765 151 Pfam PF04224 Protein of unknown function, DUF417 8 143 2.1E-29 T 15-10-2018 IPR007339 Inner membrane protein RclC-like NJ56_00760 48852e6859d092d36c921cb65a6db765 151 PIRSF PIRSF028065 1 146 1.8E-52 T 15-10-2018 IPR016865 Inner membrane protein RclC NJ56_03650 8d8affac3874f5396781a9d171795f19 193 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 7 189 1.6E-53 T 15-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 NJ56_03650 8d8affac3874f5396781a9d171795f19 193 SUPERFAMILY SSF159709 13 192 5.75E-55 T 15-10-2018 IPR038058 PhnH-like superfamily NJ56_03650 8d8affac3874f5396781a9d171795f19 193 PIRSF PIRSF020680 1 193 1.6E-57 T 15-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 NJ56_03650 8d8affac3874f5396781a9d171795f19 193 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 6 191 8.5E-63 T 15-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 NJ56_03650 8d8affac3874f5396781a9d171795f19 193 Gene3D G3DSA:3.40.50.11310 1 193 7.8E-64 T 15-10-2018 IPR038058 PhnH-like superfamily NJ56_12120 d626ec5c1a927eeee2d3fe91bded25e2 90 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 3 85 6.2E-9 T 15-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative NJ56_05600 eb7d9f8dfe306b33bb1079f8d19896a0 600 SUPERFAMILY SSF90123 16 323 1.24E-40 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_05600 eb7d9f8dfe306b33bb1079f8d19896a0 600 SMART SM00382 361 547 5.5E-17 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_05600 eb7d9f8dfe306b33bb1079f8d19896a0 600 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 22 559 3.9E-218 T 15-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 NJ56_05600 eb7d9f8dfe306b33bb1079f8d19896a0 600 SUPERFAMILY SSF52540 328 551 2.38E-57 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05600 eb7d9f8dfe306b33bb1079f8d19896a0 600 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_05600 eb7d9f8dfe306b33bb1079f8d19896a0 600 Pfam PF00005 ABC transporter 352 499 1.2E-29 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_05600 eb7d9f8dfe306b33bb1079f8d19896a0 600 Gene3D G3DSA:1.20.1560.10 14 321 2.3E-31 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_05600 eb7d9f8dfe306b33bb1079f8d19896a0 600 Gene3D G3DSA:3.40.50.300 333 583 5.7E-62 T 15-10-2018 NJ56_05600 eb7d9f8dfe306b33bb1079f8d19896a0 600 Pfam PF00664 ABC transporter transmembrane region 29 286 6.5E-10 T 15-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 NJ56_04915 aed91c8382252d6913d3a1f86ec23e27 259 ProSitePatterns PS01218 TatC family signature. 154 173 - T 15-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site NJ56_04915 aed91c8382252d6913d3a1f86ec23e27 259 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 226 5.2E-78 T 15-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NJ56_04915 aed91c8382252d6913d3a1f86ec23e27 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 8 35 2.8E-49 T 15-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NJ56_04915 aed91c8382252d6913d3a1f86ec23e27 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 85 103 2.8E-49 T 15-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NJ56_04915 aed91c8382252d6913d3a1f86ec23e27 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 154 182 2.8E-49 T 15-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NJ56_04915 aed91c8382252d6913d3a1f86ec23e27 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 103 129 2.8E-49 T 15-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NJ56_04915 aed91c8382252d6913d3a1f86ec23e27 259 Pfam PF00902 Sec-independent protein translocase protein (TatC) 12 221 3.0E-64 T 15-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NJ56_04915 aed91c8382252d6913d3a1f86ec23e27 259 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 7 241 15.9 T 15-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 SMART SM00283 266 513 8.1E-92 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 1.0E-62 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.0E-62 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 1.0E-62 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 1.0E-62 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 1.0E-62 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 481 1.0E-52 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 SUPERFAMILY SSF47170 29 162 8.24E-6 T 15-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 Gene3D G3DSA:1.10.287.950 213 515 6.2E-88 T 15-10-2018 NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 Pfam PF02203 Tar ligand binding domain homologue 1 168 4.1E-19 T 15-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 SMART SM00304 213 265 3.3E-6 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_13545 ad89d4f8e78b3cf4c6fddf542921ce86 537 SUPERFAMILY SSF58104 233 515 2.49E-73 T 15-10-2018 NJ56_05385 b3f67975fe8711e6910566cf0b2062a7 376 Hamap MF_02028 UDP-N-acetylglucosamine 2-epimerase [wecB]. 16 374 68.941 T 15-10-2018 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB GO:0008761|GO:0009246 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 NJ56_05385 b3f67975fe8711e6910566cf0b2062a7 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 372 1.9E-171 T 15-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 NJ56_05385 b3f67975fe8711e6910566cf0b2062a7 376 SUPERFAMILY SSF53756 2 372 4.08E-143 T 15-10-2018 NJ56_05385 b3f67975fe8711e6910566cf0b2062a7 376 Gene3D G3DSA:3.40.50.2000 187 356 2.8E-156 T 15-10-2018 NJ56_05385 b3f67975fe8711e6910566cf0b2062a7 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 22 370 3.3E-128 T 15-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 NJ56_05385 b3f67975fe8711e6910566cf0b2062a7 376 Gene3D G3DSA:3.40.50.2000 2 367 2.8E-156 T 15-10-2018 NJ56_14460 d9dd29b62941bc72458480df8974613f 428 Pfam PF01458 Uncharacterized protein family (UPF0051) 175 398 5.5E-72 T 15-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 NJ56_14460 d9dd29b62941bc72458480df8974613f 428 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 137 414 9.8E-85 T 15-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 NJ56_14460 d9dd29b62941bc72458480df8974613f 428 SUPERFAMILY SSF101960 37 423 1.06E-107 T 15-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 500 519 4.0E-54 T 15-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 606 628 4.0E-54 T 15-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 472 496 4.0E-54 T 15-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 588 603 4.0E-54 T 15-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 530 550 4.0E-54 T 15-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 446 464 4.0E-54 T 15-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 Gene3D G3DSA:3.40.50.1820 23 674 6.4E-257 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 Gene3D G3DSA:2.130.10.120 74 405 6.4E-257 T 15-10-2018 NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 Pfam PF00326 Prolyl oligopeptidase family 461 674 3.9E-70 T 15-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 12 404 8.1E-103 T 15-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 SUPERFAMILY SSF53474 414 655 7.81E-48 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_14005 ccc6743aea3f45730567fa81e8e9a91c 676 SUPERFAMILY SSF50993 2 406 3.92E-87 T 15-10-2018 NJ56_06775 bc3abae332ffb766dd60b3fb5dc5a889 257 SUPERFAMILY SSF54197 33 251 6.29E-86 T 15-10-2018 IPR036265 HIT-like superfamily NJ56_06775 bc3abae332ffb766dd60b3fb5dc5a889 257 Hamap MF_00319 CDP-diacylglycerol pyrophosphatase [cdh]. 5 253 40.45 T 15-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 NJ56_06775 bc3abae332ffb766dd60b3fb5dc5a889 257 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 33 251 1.2E-89 T 15-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 NJ56_06775 bc3abae332ffb766dd60b3fb5dc5a889 257 PIRSF PIRSF001273 5 256 5.3E-93 T 15-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 NJ56_06775 bc3abae332ffb766dd60b3fb5dc5a889 257 Gene3D G3DSA:3.30.428.30 29 253 9.6E-89 T 15-10-2018 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily KEGG: 00564+3.6.1.26 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 2.9E-138 T 15-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 Gene3D G3DSA:3.20.20.70 3 337 1.3E-145 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 15-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 5.2E-57 T 15-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 5.2E-57 T 15-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 5.2E-57 T 15-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 5.2E-57 T 15-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 5.2E-57 T 15-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 5.2E-57 T 15-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 PIRSF PIRSF001415 2 336 2.8E-151 T 15-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 SMART SM01004 9 333 5.0E-237 T 15-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 NJ56_04905 6e4d25e1f25b080bd39a0aba3be4a056 340 SUPERFAMILY SSF51569 7 335 9.38E-143 T 15-10-2018 NJ56_17130 3169ee2200a75fe5bf5ea9932f587b3a 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 266 1.1E-12 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_17130 3169ee2200a75fe5bf5ea9932f587b3a 281 Gene3D G3DSA:1.10.3720.10 15 270 1.7E-45 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17130 3169ee2200a75fe5bf5ea9932f587b3a 281 SUPERFAMILY SSF161098 9 267 2.75E-52 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_08660 2c0f950473e900467d785c3113199471 274 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 273 18.205 T 15-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 NJ56_08660 2c0f950473e900467d785c3113199471 274 Pfam PF02673 Bacitracin resistance protein BacA 10 267 8.9E-85 T 15-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 NJ56_08660 2c0f950473e900467d785c3113199471 274 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 266 6.0E-97 T 15-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 NJ56_00590 36221b0dbdd44e6f8364f8e41f088d68 474 Pfam PF01938 TRAM domain 378 440 2.3E-16 T 15-10-2018 IPR002792 TRAM domain NJ56_00590 36221b0dbdd44e6f8364f8e41f088d68 474 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 15-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 NJ56_00590 36221b0dbdd44e6f8364f8e41f088d68 474 SUPERFAMILY SSF102114 125 373 2.22E-63 T 15-10-2018 NJ56_00590 36221b0dbdd44e6f8364f8e41f088d68 474 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 8.6E-29 T 15-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 NJ56_00590 36221b0dbdd44e6f8364f8e41f088d68 474 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 437 2.2E-151 T 15-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 NJ56_00590 36221b0dbdd44e6f8364f8e41f088d68 474 Gene3D G3DSA:3.80.30.20 145 378 8.6E-83 T 15-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe NJ56_00590 36221b0dbdd44e6f8364f8e41f088d68 474 Pfam PF04055 Radical SAM superfamily 151 324 2.2E-26 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_00590 36221b0dbdd44e6f8364f8e41f088d68 474 Gene3D G3DSA:3.40.50.12160 3 135 9.1E-32 T 15-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily NJ56_00590 36221b0dbdd44e6f8364f8e41f088d68 474 SMART SM00729 147 367 3.5E-61 T 15-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 NJ56_00590 36221b0dbdd44e6f8364f8e41f088d68 474 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 440 72.998 T 15-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 NJ56_00590 36221b0dbdd44e6f8364f8e41f088d68 474 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 440 4.3E-202 T 15-10-2018 NJ56_05900 344c65bbc367eb07e2d952a6623e12be 78 Pfam PF00830 Ribosomal L28 family 3 62 1.8E-25 T 15-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_05900 344c65bbc367eb07e2d952a6623e12be 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.265 T 15-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_05900 344c65bbc367eb07e2d952a6623e12be 78 Gene3D G3DSA:2.30.170.40 2 78 7.7E-33 T 15-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_05900 344c65bbc367eb07e2d952a6623e12be 78 SUPERFAMILY SSF143800 1 77 7.46E-30 T 15-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_05900 344c65bbc367eb07e2d952a6623e12be 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 9.0E-29 T 15-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_12650 8e190cfd695223ed98516afdcabd7ddd 97 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 1 94 2.3E-31 T 15-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 NJ56_12650 8e190cfd695223ed98516afdcabd7ddd 97 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 1 74 2.0E-21 T 15-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 NJ56_12650 8e190cfd695223ed98516afdcabd7ddd 97 PIRSF PIRSF002736 1 97 5.7E-38 T 15-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 NJ56_12650 8e190cfd695223ed98516afdcabd7ddd 97 Hamap MF_00805 Citrate lyase acyl carrier protein [citD]. 1 97 26.515 T 15-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 NJ56_12650 8e190cfd695223ed98516afdcabd7ddd 97 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 5 86 3.8E-29 T 15-10-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein NJ56_06440 c95b732f0a23a1d7471f5ae0ba0a76e5 417 Gene3D G3DSA:3.40.640.10 1 416 2.0E-145 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_06440 c95b732f0a23a1d7471f5ae0ba0a76e5 417 Pfam PF00155 Aminotransferase class I and II 67 373 4.8E-23 T 15-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NJ56_06440 c95b732f0a23a1d7471f5ae0ba0a76e5 417 SUPERFAMILY SSF53383 24 412 3.85E-61 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_17115 78a7bdb72e71532015ac546705bb772d 243 SMART SM00079 22 243 0.001 T 15-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 NJ56_17115 78a7bdb72e71532015ac546705bb772d 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 3 241 4.4E-86 T 15-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 NJ56_17115 78a7bdb72e71532015ac546705bb772d 243 SUPERFAMILY SSF53850 1 242 4.06E-71 T 15-10-2018 NJ56_17115 78a7bdb72e71532015ac546705bb772d 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 15-10-2018 IPR018313 Solute-binding protein family 3, conserved site NJ56_17115 78a7bdb72e71532015ac546705bb772d 243 SMART SM00062 22 242 2.6E-83 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_17115 78a7bdb72e71532015ac546705bb772d 243 Gene3D G3DSA:3.40.190.10 26 240 8.0E-83 T 15-10-2018 NJ56_17115 78a7bdb72e71532015ac546705bb772d 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 3.1E-71 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_17115 78a7bdb72e71532015ac546705bb772d 243 Gene3D G3DSA:3.40.190.10 108 201 8.0E-83 T 15-10-2018 NJ56_15360 6b36c454ac77046c462375ff2db11348 141 Gene3D G3DSA:3.10.129.10 1 137 2.9E-45 T 15-10-2018 NJ56_15360 6b36c454ac77046c462375ff2db11348 141 Pfam PF03061 Thioesterase superfamily 25 96 8.2E-20 T 15-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 NJ56_15360 6b36c454ac77046c462375ff2db11348 141 SUPERFAMILY SSF54637 6 130 4.4E-41 T 15-10-2018 IPR029069 HotDog domain superfamily NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 Gene3D G3DSA:3.30.565.10 455 579 3.3E-27 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 SUPERFAMILY SSF55874 455 578 1.07E-17 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 32 110 1.0E-6 T 15-10-2018 IPR029095 NarX-like, N-terminal NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 SUPERFAMILY SSF158472 173 221 3.53E-9 T 15-10-2018 NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 Gene3D G3DSA:1.10.287.130 170 281 8.9E-9 T 15-10-2018 NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 SMART SM00304 173 226 4.4E-11 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 Pfam PF07730 Histidine kinase 384 447 3.4E-18 T 15-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 SMART SM00387 488 581 3.0E-9 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 490 580 6.5E-7 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 Gene3D G3DSA:1.20.120.960 39 145 4.8E-36 T 15-10-2018 NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 Pfam PF00672 HAMP domain 173 221 1.7E-10 T 15-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 NJ56_16255 a0059bfc96185c1ee9476b8395d4ea01 585 PIRSF PIRSF003167 1 585 9.5E-191 T 15-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 NJ56_04450 c76f0ae026301ee8ff2ee36c0f40e923 315 Pfam PF06834 TraU protein 35 304 1.6E-70 T 15-10-2018 IPR009649 TraU NJ56_04450 c76f0ae026301ee8ff2ee36c0f40e923 315 TIGRFAM TIGR03756 conj_TIGR03756: integrating conjugative element protein, PFL_4710 family 29 314 2.7E-125 T 15-10-2018 IPR026331 Integrating conjugative element protein PFL_4710 NJ56_13955 c98b127adbb5eff5217b27c525cdc334 513 Pfam PF00571 CBS domain 365 415 3.5E-5 T 15-10-2018 IPR000644 CBS domain NJ56_13955 c98b127adbb5eff5217b27c525cdc334 513 Gene3D G3DSA:3.10.580.10 277 432 3.6E-44 T 15-10-2018 NJ56_13955 c98b127adbb5eff5217b27c525cdc334 513 Gene3D G3DSA:3.30.465.10 433 507 1.9E-14 T 15-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 NJ56_13955 c98b127adbb5eff5217b27c525cdc334 513 Pfam PF03741 Integral membrane protein TerC family 14 203 7.8E-48 T 15-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 NJ56_13955 c98b127adbb5eff5217b27c525cdc334 513 SMART SM01091 427 508 1.1E-18 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_13955 c98b127adbb5eff5217b27c525cdc334 513 Pfam PF03471 Transporter associated domain 429 507 1.1E-15 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_13955 c98b127adbb5eff5217b27c525cdc334 513 SUPERFAMILY SSF54631 284 418 9.1E-24 T 15-10-2018 NJ56_13955 c98b127adbb5eff5217b27c525cdc334 513 SUPERFAMILY SSF56176 428 511 2.13E-16 T 15-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 NJ56_12255 7132827d82852fb340f067e991ea0601 194 SUPERFAMILY SSF54001 70 188 2.06E-38 T 15-10-2018 IPR038765 Papain-like cysteine peptidase superfamily NJ56_12255 7132827d82852fb340f067e991ea0601 194 Pfam PF00877 NlpC/P60 family 82 185 2.8E-30 T 15-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain NJ56_12255 7132827d82852fb340f067e991ea0601 194 Gene3D G3DSA:3.90.1720.10 65 193 4.0E-44 T 15-10-2018 NJ56_10970 3191e2e445aa3a1771b19e381d3d73eb 168 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 28 165 23.254 T 15-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 NJ56_10970 3191e2e445aa3a1771b19e381d3d73eb 168 Pfam PF12838 4Fe-4S dicluster domain 111 158 1.3E-7 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_10970 3191e2e445aa3a1771b19e381d3d73eb 168 Pfam PF13187 4Fe-4S dicluster domain 40 84 3.3E-6 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_10970 3191e2e445aa3a1771b19e381d3d73eb 168 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 144 155 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_10970 3191e2e445aa3a1771b19e381d3d73eb 168 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 6 160 1.3E-45 T 15-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 NJ56_10970 3191e2e445aa3a1771b19e381d3d73eb 168 Gene3D G3DSA:3.30.70.20 105 167 2.3E-8 T 15-10-2018 NJ56_10970 3191e2e445aa3a1771b19e381d3d73eb 168 Gene3D G3DSA:3.30.70.20 36 104 1.2E-7 T 15-10-2018 NJ56_10970 3191e2e445aa3a1771b19e381d3d73eb 168 SUPERFAMILY SSF54862 35 162 2.3E-18 T 15-10-2018 NJ56_10970 3191e2e445aa3a1771b19e381d3d73eb 168 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_10295 9ba9e2b2f4ce8fad2774e27fbc9b2071 227 SUPERFAMILY SSF52141 4 221 7.29E-95 T 15-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 NJ56_10295 9ba9e2b2f4ce8fad2774e27fbc9b2071 227 Pfam PF03167 Uracil DNA glycosylase superfamily 55 209 6.0E-25 T 15-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 NJ56_10295 9ba9e2b2f4ce8fad2774e27fbc9b2071 227 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 221 40.053 T 15-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 NJ56_10295 9ba9e2b2f4ce8fad2774e27fbc9b2071 227 SMART SM00986 49 210 2.0E-41 T 15-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 NJ56_10295 9ba9e2b2f4ce8fad2774e27fbc9b2071 227 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 6 214 8.1E-87 T 15-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 NJ56_10295 9ba9e2b2f4ce8fad2774e27fbc9b2071 227 Gene3D G3DSA:3.40.470.10 1 226 2.2E-104 T 15-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 NJ56_10295 9ba9e2b2f4ce8fad2774e27fbc9b2071 227 SMART SM00987 49 210 2.0E-41 T 15-10-2018 NJ56_10295 9ba9e2b2f4ce8fad2774e27fbc9b2071 227 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 57 66 - T 15-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 NJ56_13770 e53a3c87050b980fdf307c34d8ad9ecf 109 Pfam PF06411 HdeA/HdeB family 10 96 4.6E-23 T 15-10-2018 IPR010486 HNS-dependent expression A/B NJ56_13770 e53a3c87050b980fdf307c34d8ad9ecf 109 ProDom PD070929 HDEB PRECURSOR SIGNAL EXPORTED PERIPLASMIC SECRETED ECS4389 10K-L SEQUENCING DIRECT 33 103 1.0E-27 T 15-10-2018 NJ56_13770 e53a3c87050b980fdf307c34d8ad9ecf 109 Gene3D G3DSA:1.10.890.10 29 106 4.0E-34 T 15-10-2018 IPR038303 HNS-dependent expression A/B superfamily NJ56_13770 e53a3c87050b980fdf307c34d8ad9ecf 109 Hamap MF_00947 Acid stress chaperone HdeB [hdeB]. 1 102 28.047 T 15-10-2018 IPR028623 HNS-dependent expression B GO:0009268|GO:0051082 NJ56_00945 2514bbbc144647ec0e6c7e3b64e830ea 566 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 381 557 3.8E-14 T 15-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal NJ56_00945 2514bbbc144647ec0e6c7e3b64e830ea 566 Pfam PF15864 Protein glycosylation ligase 167 192 1.2E-9 T 15-10-2018 IPR031726 Protein glycosylation ligase domain NJ56_00945 2514bbbc144647ec0e6c7e3b64e830ea 566 Pfam PF04932 O-Antigen ligase 219 359 8.7E-17 T 15-10-2018 IPR007016 O-antigen ligase-related NJ56_06835 26f4a618efeef79c7a942120b251d5a2 498 Pfam PF01384 Phosphate transporter family 30 487 2.9E-88 T 15-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 NJ56_00640 f5f478af273d157217aeeb768139e457 160 Pfam PF07295 Zinc-ribbon containing domain 14 157 5.1E-55 T 15-10-2018 IPR009912 Zinc-ribbon containing domain NJ56_08475 0fc4de272a39d3a530d8f7a2cc894067 78 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 17 76 4.3E-20 T 15-10-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 NJ56_08510 0fc4de272a39d3a530d8f7a2cc894067 78 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 17 76 4.3E-20 T 15-10-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 NJ56_17015 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 3.1E-27 T 15-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 NJ56_17015 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SMART SM00316 4 72 4.3E-7 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_17015 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Gene3D G3DSA:2.40.50.140 1 72 9.2E-36 T 15-10-2018 NJ56_17015 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SUPERFAMILY SSF50249 1 70 1.18E-28 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_17015 25ddc8d907d8c6cdf9a50a3e27ba432a 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.3E-38 T 15-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 NJ56_17015 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.17 T 15-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 NJ56_01675 537b3e10dc66c04d61ffeceb8b66b207 249 Gene3D G3DSA:2.30.110.10 6 115 1.2E-7 T 15-10-2018 IPR012349 FMN-binding split barrel GO:0048037 NJ56_01675 537b3e10dc66c04d61ffeceb8b66b207 249 Pfam PF07317 Flagellar regulator YcgR 9 112 3.0E-30 T 15-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal NJ56_01675 537b3e10dc66c04d61ffeceb8b66b207 249 Gene3D G3DSA:2.40.10.220 117 244 4.5E-36 T 15-10-2018 NJ56_01675 537b3e10dc66c04d61ffeceb8b66b207 249 Pfam PF07238 PilZ domain 115 233 1.4E-10 T 15-10-2018 IPR009875 PilZ domain GO:0035438 NJ56_01675 537b3e10dc66c04d61ffeceb8b66b207 249 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 4 242 29.408 T 15-10-2018 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 NJ56_06580 94ea4ea5ddfdf2577be86d451f235fa4 461 Gene3D G3DSA:3.40.640.10 94 358 4.4E-157 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_06580 94ea4ea5ddfdf2577be86d451f235fa4 461 Pfam PF03841 L-seryl-tRNA selenium transferase 82 449 1.2E-168 T 15-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 NJ56_06580 94ea4ea5ddfdf2577be86d451f235fa4 461 Gene3D G3DSA:3.90.1150.110 11 453 4.4E-157 T 15-10-2018 NJ56_06580 94ea4ea5ddfdf2577be86d451f235fa4 461 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 10 454 7.1E-184 T 15-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 NJ56_06580 94ea4ea5ddfdf2577be86d451f235fa4 461 SUPERFAMILY SSF53383 73 377 2.6E-43 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_06580 94ea4ea5ddfdf2577be86d451f235fa4 461 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 461 242.071 T 15-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 NJ56_06580 94ea4ea5ddfdf2577be86d451f235fa4 461 Pfam PF12390 Selenocysteine synthase N terminal 9 48 3.5E-9 T 15-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 NJ56_05705 ed58b801ea0edb1e3cb32d593b57b116 176 Gene3D G3DSA:3.60.20.10 1 173 4.8E-67 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_05705 ed58b801ea0edb1e3cb32d593b57b116 176 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 172 1.7E-86 T 15-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 NJ56_05705 ed58b801ea0edb1e3cb32d593b57b116 176 SUPERFAMILY SSF56235 2 172 5.9E-58 T 15-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal NJ56_05705 ed58b801ea0edb1e3cb32d593b57b116 176 Pfam PF00227 Proteasome subunit 2 165 1.9E-21 T 15-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 NJ56_05705 ed58b801ea0edb1e3cb32d593b57b116 176 PIRSF PIRSF039093 1 175 1.4E-87 T 15-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 NJ56_05705 ed58b801ea0edb1e3cb32d593b57b116 176 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 41.776 T 15-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 NJ56_09930 cd98aa45da40ffad7a5c23002a144db4 397 SUPERFAMILY SSF103473 12 389 1.23E-52 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_09930 cd98aa45da40ffad7a5c23002a144db4 397 Pfam PF07690 Major Facilitator Superfamily 19 309 3.4E-30 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_09930 cd98aa45da40ffad7a5c23002a144db4 397 Gene3D G3DSA:1.20.1250.20 11 390 2.0E-44 T 15-10-2018 NJ56_06780 0803696c90f9484d1cd667df2eaafed3 314 TIGRFAM TIGR00766 TIGR00766: inner membrane protein YhjD 30 304 1.1E-121 T 15-10-2018 IPR005274 Inner membrane protein YhjD NJ56_06780 0803696c90f9484d1cd667df2eaafed3 314 Pfam PF03631 Virulence factor BrkB 44 303 3.5E-45 T 15-10-2018 IPR017039 Virulence factor BrkB NJ56_06780 0803696c90f9484d1cd667df2eaafed3 314 PIRSF PIRSF035875 16 312 6.6E-23 T 15-10-2018 IPR017039 Virulence factor BrkB NJ56_01695 d60b5e3c35bbc8b9c5ca34fa085cf389 415 Gene3D G3DSA:3.40.50.1820 16 414 1.2E-108 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_01695 d60b5e3c35bbc8b9c5ca34fa085cf389 415 SUPERFAMILY SSF53474 46 411 2.51E-51 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_01695 d60b5e3c35bbc8b9c5ca34fa085cf389 415 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 1 414 1.3E-210 T 15-10-2018 IPR010520 UPF0255 family NJ56_01695 d60b5e3c35bbc8b9c5ca34fa085cf389 415 Hamap MF_01063 Esterase FrsA [frsA]. 1 415 61.374 T 15-10-2018 IPR010520 UPF0255 family NJ56_00840 b981483eb44fa562a62856260012d9b0 179 Pfam PF01292 Prokaryotic cytochrome b561 6 177 1.9E-22 T 15-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 NJ56_00840 b981483eb44fa562a62856260012d9b0 179 SUPERFAMILY SSF81342 4 178 2.04E-26 T 15-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 NJ56_07930 ca0fc5ffbb248dec1ca457fac3f86470 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 6 306 3.3E-138 T 15-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 NJ56_07930 ca0fc5ffbb248dec1ca457fac3f86470 306 Hamap MF_01943 Lipid A biosynthesis palmitoleoyltransferase [lpxP]. 3 306 68.934 T 15-10-2018 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP GO:0008951|GO:0009409|GO:0036104 NJ56_07930 ca0fc5ffbb248dec1ca457fac3f86470 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 50.856 T 15-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 NJ56_07930 ca0fc5ffbb248dec1ca457fac3f86470 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 5 297 5.4E-103 T 15-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 NJ56_07930 ca0fc5ffbb248dec1ca457fac3f86470 306 PIRSF PIRSF026649 3 306 7.9E-96 T 15-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 NJ56_12505 273b3b6e223b1dae29933323d4b85ddf 342 Pfam PF00437 Type II/IV secretion system protein 21 310 2.3E-43 T 15-10-2018 IPR001482 Type II/IV secretion system protein NJ56_12505 273b3b6e223b1dae29933323d4b85ddf 342 SUPERFAMILY SSF52540 14 315 2.46E-42 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_12505 273b3b6e223b1dae29933323d4b85ddf 342 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 15-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NJ56_12505 273b3b6e223b1dae29933323d4b85ddf 342 Gene3D G3DSA:3.30.450.90 10 108 2.8E-34 T 15-10-2018 NJ56_12505 273b3b6e223b1dae29933323d4b85ddf 342 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 20 325 2.1E-93 T 15-10-2018 IPR014155 Type IV secretion system protein VirB11 GO:0043684|GO:0044097 NJ56_12505 273b3b6e223b1dae29933323d4b85ddf 342 Gene3D G3DSA:3.40.50.300 118 340 2.0E-50 T 15-10-2018 NJ56_11725 6d754de12eb301eaf03020fa13c9f7a8 507 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 174 198 1.5E-36 T 15-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11725 6d754de12eb301eaf03020fa13c9f7a8 507 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 249 273 1.5E-36 T 15-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11725 6d754de12eb301eaf03020fa13c9f7a8 507 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 1.5E-36 T 15-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11725 6d754de12eb301eaf03020fa13c9f7a8 507 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 1.5E-36 T 15-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11725 6d754de12eb301eaf03020fa13c9f7a8 507 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 337 356 1.5E-36 T 15-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11725 6d754de12eb301eaf03020fa13c9f7a8 507 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 496 4.2E-182 T 15-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11725 6d754de12eb301eaf03020fa13c9f7a8 507 Pfam PF00361 Proton-conducting membrane transporter 134 431 1.0E-70 T 15-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16335 3a5f1b2a0b94327b0962cd2a024042c3 190 Gene3D G3DSA:1.10.287.950 1 186 2.2E-56 T 15-10-2018 NJ56_16335 3a5f1b2a0b94327b0962cd2a024042c3 190 SUPERFAMILY SSF58104 11 185 2.35E-53 T 15-10-2018 NJ56_16335 3a5f1b2a0b94327b0962cd2a024042c3 190 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 5 149 5.2E-48 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_16335 3a5f1b2a0b94327b0962cd2a024042c3 190 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 64 93 8.6E-39 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_16335 3a5f1b2a0b94327b0962cd2a024042c3 190 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 35 62 8.6E-39 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_16335 3a5f1b2a0b94327b0962cd2a024042c3 190 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 112 141 8.6E-39 T 15-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 NJ56_16335 3a5f1b2a0b94327b0962cd2a024042c3 190 SMART SM00283 1 184 2.8E-34 T 15-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 NJ56_15515 3d4fa614c1f7848fa2e0f5496c2bfc07 307 Gene3D G3DSA:3.40.1090.10 106 213 4.1E-14 T 15-10-2018 NJ56_15515 3d4fa614c1f7848fa2e0f5496c2bfc07 307 Gene3D G3DSA:3.40.1090.10 1 105 1.2E-19 T 15-10-2018 NJ56_15515 3d4fa614c1f7848fa2e0f5496c2bfc07 307 SUPERFAMILY SSF52151 1 301 5.49E-55 T 15-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase NJ56_15515 3d4fa614c1f7848fa2e0f5496c2bfc07 307 Pfam PF01734 Patatin-like phospholipase 8 165 4.0E-19 T 15-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 NJ56_16775 8420939709a6a9efc9bd95700e1c8b7f 412 Pfam PF04403 Paraquat-inducible protein A 40 190 5.0E-37 T 15-10-2018 IPR007498 Intermembrane transport protein PqiA-like NJ56_16775 8420939709a6a9efc9bd95700e1c8b7f 412 Pfam PF04403 Paraquat-inducible protein A 243 399 2.0E-52 T 15-10-2018 IPR007498 Intermembrane transport protein PqiA-like NJ56_16775 8420939709a6a9efc9bd95700e1c8b7f 412 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 2 398 2.7E-151 T 15-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type NJ56_00630 498510e57ec20d52696e26ce93c14385 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 223 1.6E-16 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_00630 498510e57ec20d52696e26ce93c14385 224 Gene3D G3DSA:1.10.3720.10 2 224 3.6E-50 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_00630 498510e57ec20d52696e26ce93c14385 224 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 118 4.6E-24 T 15-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 NJ56_00630 498510e57ec20d52696e26ce93c14385 224 SUPERFAMILY SSF161098 14 209 1.14E-38 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_06655 b66d835ba48c176b84cd74ffe2eff70f 196 Pfam PF00072 Response regulator receiver domain 6 114 8.5E-24 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_06655 b66d835ba48c176b84cd74ffe2eff70f 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 138 191 9.1E-19 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_06655 b66d835ba48c176b84cd74ffe2eff70f 196 SMART SM00421 136 193 1.3E-20 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_06655 b66d835ba48c176b84cd74ffe2eff70f 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 153 8.7E-13 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_06655 b66d835ba48c176b84cd74ffe2eff70f 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 181 8.7E-13 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_06655 b66d835ba48c176b84cd74ffe2eff70f 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 169 8.7E-13 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_06655 b66d835ba48c176b84cd74ffe2eff70f 196 SMART SM00448 3 113 2.4E-25 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_06655 b66d835ba48c176b84cd74ffe2eff70f 196 SUPERFAMILY SSF52172 2 130 1.71E-26 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_06655 b66d835ba48c176b84cd74ffe2eff70f 196 Gene3D G3DSA:3.40.50.12740 4 195 1.1E-52 T 15-10-2018 NJ56_06655 b66d835ba48c176b84cd74ffe2eff70f 196 ProSitePatterns PS00622 LuxR-type HTH domain signature. 153 180 - T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_06655 b66d835ba48c176b84cd74ffe2eff70f 196 SUPERFAMILY SSF46894 122 194 4.08E-20 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_11745 0f6b041076f1de879b0f36609de239a3 446 SUPERFAMILY SSF56322 23 443 1.2E-97 T 15-10-2018 IPR005801 ADC synthase GO:0009058 NJ56_11745 0f6b041076f1de879b0f36609de239a3 446 Hamap MF_01935 Isochorismate synthase MenF [menF]. 3 445 30.505 T 15-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 NJ56_11745 0f6b041076f1de879b0f36609de239a3 446 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 93 442 4.5E-102 T 15-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 NJ56_11745 0f6b041076f1de879b0f36609de239a3 446 Pfam PF00425 chorismate binding enzyme 185 435 4.3E-65 T 15-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal NJ56_11745 0f6b041076f1de879b0f36609de239a3 446 Gene3D G3DSA:3.60.120.10 1 446 1.8E-148 T 15-10-2018 IPR005801 ADC synthase GO:0009058 NJ56_15780 497880446b5af35dab96bb72cc9a532b 109 Gene3D G3DSA:1.10.3730.20 7 109 2.7E-27 T 15-10-2018 NJ56_15780 497880446b5af35dab96bb72cc9a532b 109 Hamap MF_01597 Spermidine export protein MdtI [mdtI]. 1 109 30.2 T 15-10-2018 IPR023737 Spermidine export protein MdtI GO:0005886|GO:0015606|GO:0015848 NJ56_15780 497880446b5af35dab96bb72cc9a532b 109 Pfam PF00893 Small Multidrug Resistance protein 10 99 6.1E-27 T 15-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 NJ56_15780 497880446b5af35dab96bb72cc9a532b 109 SUPERFAMILY SSF103481 11 108 2.88E-17 T 15-10-2018 NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 15-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 15-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 15-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 SMART SM00100 2 122 7.6E-27 T 15-10-2018 IPR000595 Cyclic nucleotide-binding domain NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 SUPERFAMILY SSF51206 8 136 1.27E-35 T 15-10-2018 IPR018490 Cyclic nucleotide-binding-like NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 Gene3D G3DSA:1.10.10.10 139 207 1.3E-35 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 SMART SM00419 160 208 4.5E-17 T 15-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 8.8E-11 T 15-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 8.8E-11 T 15-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 6.5E-24 T 15-10-2018 IPR000595 Cyclic nucleotide-binding domain NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 SUPERFAMILY SSF46785 139 207 3.64E-16 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 1.8E-15 T 15-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NJ56_07205 780433b226ef0d8b7e86d7509f2e96ac 210 Gene3D G3DSA:2.60.120.10 10 138 6.9E-45 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_02470 7e094514e4ebca7db4199d9e5c902d55 186 Pfam PF13563 2'-5' RNA ligase superfamily 18 144 1.1E-11 T 15-10-2018 NJ56_02470 7e094514e4ebca7db4199d9e5c902d55 186 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 8 176 9.1E-35 T 15-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 NJ56_02470 7e094514e4ebca7db4199d9e5c902d55 186 SUPERFAMILY SSF55144 8 178 2.3E-44 T 15-10-2018 IPR009097 Cyclic phosphodiesterase NJ56_02470 7e094514e4ebca7db4199d9e5c902d55 186 Gene3D G3DSA:3.90.1140.10 5 177 7.2E-48 T 15-10-2018 NJ56_02470 7e094514e4ebca7db4199d9e5c902d55 186 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 7 176 21.344 T 15-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 NJ56_07230 7c24183d9d3984e781ee82961f8afa06 188 Gene3D G3DSA:3.40.50.2020 2 185 8.9E-31 T 15-10-2018 NJ56_07230 7c24183d9d3984e781ee82961f8afa06 188 Pfam PF00156 Phosphoribosyl transferase domain 37 157 1.3E-10 T 15-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 NJ56_07230 7c24183d9d3984e781ee82961f8afa06 188 SUPERFAMILY SSF53271 32 182 9.96E-25 T 15-10-2018 IPR029057 Phosphoribosyltransferase-like NJ56_10780 dbbd0ffead0222beb46be5f5f4754c0c 169 Gene3D G3DSA:2.60.40.1090 21 169 4.6E-26 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_10780 dbbd0ffead0222beb46be5f5f4754c0c 169 SUPERFAMILY SSF49401 24 169 6.46E-24 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_07175 4507332f381124c1bd8d5dac147489d9 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.4E-5 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_07175 4507332f381124c1bd8d5dac147489d9 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.4E-5 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_07175 4507332f381124c1bd8d5dac147489d9 339 Pfam PF13377 Periplasmic binding protein-like domain 169 321 9.8E-29 T 15-10-2018 NJ56_07175 4507332f381124c1bd8d5dac147489d9 339 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 15-10-2018 NJ56_07175 4507332f381124c1bd8d5dac147489d9 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 8.5E-19 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_07175 4507332f381124c1bd8d5dac147489d9 339 Gene3D G3DSA:1.10.260.40 1 57 2.4E-23 T 15-10-2018 NJ56_07175 4507332f381124c1bd8d5dac147489d9 339 SUPERFAMILY SSF47413 1 59 5.16E-18 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_07175 4507332f381124c1bd8d5dac147489d9 339 SUPERFAMILY SSF53822 61 325 1.96E-65 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_07175 4507332f381124c1bd8d5dac147489d9 339 Gene3D G3DSA:3.40.50.2300 61 302 2.4E-61 T 15-10-2018 NJ56_07175 4507332f381124c1bd8d5dac147489d9 339 Gene3D G3DSA:3.40.50.2300 160 287 2.4E-61 T 15-10-2018 NJ56_07175 4507332f381124c1bd8d5dac147489d9 339 SMART SM00354 1 71 2.8E-30 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_00980 dd0f4564d7de1dbcd3f0400becf8084e 177 Pfam PF00419 Fimbrial protein 34 177 1.1E-15 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_00980 dd0f4564d7de1dbcd3f0400becf8084e 177 Gene3D G3DSA:2.60.40.1090 44 177 4.1E-38 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_00980 dd0f4564d7de1dbcd3f0400becf8084e 177 SUPERFAMILY SSF49401 32 177 2.88E-40 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_11495 8a63be3f868e8e2135cb1ffc7e8514a3 316 SUPERFAMILY SSF103481 47 143 2.75E-10 T 15-10-2018 NJ56_11495 8a63be3f868e8e2135cb1ffc7e8514a3 316 Pfam PF00892 EamA-like transporter family 9 140 2.3E-18 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_11495 8a63be3f868e8e2135cb1ffc7e8514a3 316 Pfam PF00892 EamA-like transporter family 155 285 2.6E-21 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_11495 8a63be3f868e8e2135cb1ffc7e8514a3 316 SUPERFAMILY SSF103481 192 288 5.1E-13 T 15-10-2018 NJ56_12225 897f4cf668056dd2e36a9d244ddce569 114 ProDom PD073777 YEJG CYTOPLASMIC SIMILAR Y2914 YPO1269 STY2456 ECS3073 ESCHERICHIA COLI 1 114 9.0E-51 T 15-10-2018 IPR020489 Uncharacterised protein family YejG NJ56_12225 897f4cf668056dd2e36a9d244ddce569 114 Pfam PF13989 YejG-like protein 4 108 5.4E-51 T 15-10-2018 IPR020489 Uncharacterised protein family YejG NJ56_01285 d720b9d7548b9fcb067746242c34adb4 67 Gene3D G3DSA:1.20.1280.40 1 67 2.8E-37 T 15-10-2018 IPR036666 HHA superfamily NJ56_01285 d720b9d7548b9fcb067746242c34adb4 67 Pfam PF05321 Haemolysin expression modulating protein 8 64 2.4E-33 T 15-10-2018 IPR007985 Haemolysin expression modulating, HHA NJ56_01285 d720b9d7548b9fcb067746242c34adb4 67 SUPERFAMILY SSF68989 1 67 1.57E-30 T 15-10-2018 IPR036666 HHA superfamily NJ56_06630 a6a68365ea0456499b235a7493ffb7ea 511 Pfam PF00221 Aromatic amino acid lyase 11 471 1.0E-183 T 15-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 NJ56_06630 a6a68365ea0456499b235a7493ffb7ea 511 SUPERFAMILY SSF48557 3 503 5.34E-191 T 15-10-2018 IPR008948 L-Aspartase-like GO:0003824 NJ56_06630 a6a68365ea0456499b235a7493ffb7ea 511 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 44.026 T 15-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_06630 a6a68365ea0456499b235a7493ffb7ea 511 Gene3D G3DSA:1.10.275.10 2 197 1.8E-69 T 15-10-2018 IPR024083 Fumarase/histidase, N-terminal NJ56_06630 a6a68365ea0456499b235a7493ffb7ea 511 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 508 4.0E-220 T 15-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 NJ56_06630 a6a68365ea0456499b235a7493ffb7ea 511 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 15-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 NJ56_06630 a6a68365ea0456499b235a7493ffb7ea 511 Gene3D G3DSA:1.20.200.10 198 509 1.7E-124 T 15-10-2018 NJ56_15940 175813bf51369559cf03df8c415e88a0 194 Gene3D G3DSA:3.40.630.30 10 192 6.6E-45 T 15-10-2018 NJ56_15940 175813bf51369559cf03df8c415e88a0 194 Pfam PF13302 Acetyltransferase (GNAT) domain 17 162 1.3E-16 T 15-10-2018 IPR000182 GNAT domain NJ56_15940 175813bf51369559cf03df8c415e88a0 194 SUPERFAMILY SSF55729 12 186 3.92E-40 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_11960 a76c7ed530f34bd9dfab548c4af32328 66 Gene3D G3DSA:1.10.260.40 1 65 2.3E-17 T 15-10-2018 NJ56_11960 a76c7ed530f34bd9dfab548c4af32328 66 SUPERFAMILY SSF47413 1 62 1.01E-11 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_11960 a76c7ed530f34bd9dfab548c4af32328 66 Pfam PF14549 DNA-binding transcriptional regulator Cro 4 63 4.9E-12 T 15-10-2018 NJ56_01055 e210f626d863a28476f6fa433c3b4e58 144 SUPERFAMILY SSF46955 1 126 2.38E-34 T 15-10-2018 IPR009061 Putative DNA-binding domain superfamily NJ56_01055 e210f626d863a28476f6fa433c3b4e58 144 SMART SM00422 1 70 2.7E-27 T 15-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NJ56_01055 e210f626d863a28476f6fa433c3b4e58 144 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 3.7E-57 T 15-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 NJ56_01055 e210f626d863a28476f6fa433c3b4e58 144 Pfam PF13411 MerR HTH family regulatory protein 1 68 1.3E-18 T 15-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NJ56_01055 e210f626d863a28476f6fa433c3b4e58 144 Gene3D G3DSA:1.10.1660.10 1 125 3.9E-31 T 15-10-2018 NJ56_18040 dd58a94dcffcd4332d46ee1ae599fe9b 290 Pfam PF13614 AAA domain 13 194 1.6E-23 T 15-10-2018 IPR025669 AAA domain NJ56_18040 dd58a94dcffcd4332d46ee1ae599fe9b 290 SUPERFAMILY SSF52540 13 286 1.09E-26 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_18040 dd58a94dcffcd4332d46ee1ae599fe9b 290 Gene3D G3DSA:3.40.50.300 1 288 4.4E-36 T 15-10-2018 NJ56_16545 153389806d289985b5b178c26220c63c 344 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 342 2.3E-136 T 15-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 NJ56_16545 153389806d289985b5b178c26220c63c 344 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 344 145.054 T 15-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 NJ56_16545 153389806d289985b5b178c26220c63c 344 Pfam PF02504 Fatty acid synthesis protein 5 331 8.2E-120 T 15-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 NJ56_16545 153389806d289985b5b178c26220c63c 344 SUPERFAMILY SSF53659 5 340 2.22E-104 T 15-10-2018 NJ56_16545 153389806d289985b5b178c26220c63c 344 Gene3D G3DSA:3.40.718.10 3 343 2.6E-124 T 15-10-2018 NJ56_16545 153389806d289985b5b178c26220c63c 344 PIRSF PIRSF002465 2 344 4.1E-126 T 15-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 NJ56_13695 6d05fdd87b6015bc8d73399289708179 461 Gene3D G3DSA:3.20.20.80 3 459 2.3E-153 T 15-10-2018 NJ56_13695 6d05fdd87b6015bc8d73399289708179 461 SUPERFAMILY SSF51445 1 460 1.21E-160 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_13695 6d05fdd87b6015bc8d73399289708179 461 Pfam PF00232 Glycosyl hydrolase family 1 2 460 1.2E-135 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_13695 6d05fdd87b6015bc8d73399289708179 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 288 302 9.9E-15 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_13695 6d05fdd87b6015bc8d73399289708179 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 405 422 9.9E-15 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_13695 6d05fdd87b6015bc8d73399289708179 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 360 368 9.9E-15 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_13695 6d05fdd87b6015bc8d73399289708179 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 384 395 9.9E-15 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_13695 6d05fdd87b6015bc8d73399289708179 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 429 441 9.9E-15 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_13695 6d05fdd87b6015bc8d73399289708179 461 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 360 368 - T 15-10-2018 IPR018120 Glycoside hydrolase family 1, active site NJ56_02380 5ade67ce5f8c0c29b9f598c1fc8ab7db 119 Gene3D G3DSA:3.30.479.10 1 119 2.1E-49 T 15-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 NJ56_02380 5ade67ce5f8c0c29b9f598c1fc8ab7db 119 PIRSF PIRSF006113 1 119 5.6E-54 T 15-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 NJ56_02380 5ade67ce5f8c0c29b9f598c1fc8ab7db 119 SUPERFAMILY SSF55620 3 119 2.39E-40 T 15-10-2018 NJ56_02380 5ade67ce5f8c0c29b9f598c1fc8ab7db 119 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 6 118 1.7E-34 T 15-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 NJ56_02380 5ade67ce5f8c0c29b9f598c1fc8ab7db 119 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 5 96 1.2E-33 T 15-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 NJ56_00500 8175af0dbed9fb6af7c73280d755b8f1 148 Gene3D G3DSA:1.10.10.10 1 83 1.1E-33 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_00500 8175af0dbed9fb6af7c73280d755b8f1 148 SUPERFAMILY SSF46785 6 134 2.8E-43 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_00500 8175af0dbed9fb6af7c73280d755b8f1 148 Pfam PF01475 Ferric uptake regulator family 11 130 8.8E-48 T 15-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 NJ56_00500 8175af0dbed9fb6af7c73280d755b8f1 148 Gene3D G3DSA:3.30.1490.190 85 142 1.6E-22 T 15-10-2018 NJ56_02780 01cb02d82c15cb6f662fac7d25c0ff5a 334 Gene3D G3DSA:1.10.260.40 1 61 1.7E-28 T 15-10-2018 NJ56_02780 01cb02d82c15cb6f662fac7d25c0ff5a 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 50 4.9E-19 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_02780 01cb02d82c15cb6f662fac7d25c0ff5a 334 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 304 2.5E-13 T 15-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain NJ56_02780 01cb02d82c15cb6f662fac7d25c0ff5a 334 SUPERFAMILY SSF53822 60 314 9.03E-40 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_02780 01cb02d82c15cb6f662fac7d25c0ff5a 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 15-10-2018 NJ56_02780 01cb02d82c15cb6f662fac7d25c0ff5a 334 Gene3D G3DSA:3.40.50.2300 62 154 2.0E-25 T 15-10-2018 NJ56_02780 01cb02d82c15cb6f662fac7d25c0ff5a 334 SMART SM00354 1 73 7.4E-32 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_02780 01cb02d82c15cb6f662fac7d25c0ff5a 334 Gene3D G3DSA:3.40.50.2300 155 334 7.6E-28 T 15-10-2018 NJ56_02780 01cb02d82c15cb6f662fac7d25c0ff5a 334 SUPERFAMILY SSF47413 2 58 8.7E-16 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_02780 01cb02d82c15cb6f662fac7d25c0ff5a 334 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 328 5.9E-149 T 15-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 NJ56_09810 40a5ae5f10f8170eedb59ba487a2f64c 182 SUPERFAMILY SSF52980 2 179 6.43E-71 T 15-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 NJ56_09810 40a5ae5f10f8170eedb59ba487a2f64c 182 SMART SM01322 1 176 2.0E-117 T 15-10-2018 IPR009822 YaeQ NJ56_09810 40a5ae5f10f8170eedb59ba487a2f64c 182 Gene3D G3DSA:3.10.640.10 1 181 6.0E-76 T 15-10-2018 IPR038590 YaeQ superfamily NJ56_09810 40a5ae5f10f8170eedb59ba487a2f64c 182 Pfam PF07152 YaeQ protein 1 173 1.2E-74 T 15-10-2018 IPR009822 YaeQ NJ56_09810 40a5ae5f10f8170eedb59ba487a2f64c 182 PIRSF PIRSF011484 1 180 1.2E-68 T 15-10-2018 IPR009822 YaeQ NJ56_13760 e0536758290b8181f6300e96ab13c783 163 Gene3D G3DSA:3.40.630.30 1 160 2.9E-23 T 15-10-2018 NJ56_13760 e0536758290b8181f6300e96ab13c783 163 SUPERFAMILY SSF55729 1 155 1.72E-22 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_13760 e0536758290b8181f6300e96ab13c783 163 Pfam PF13673 Acetyltransferase (GNAT) domain 55 139 2.1E-11 T 15-10-2018 IPR000182 GNAT domain NJ56_02210 46caceca9ce98d9816a156a98c635738 261 SUPERFAMILY SSF46689 205 253 2.78E-10 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_02210 46caceca9ce98d9816a156a98c635738 261 Gene3D G3DSA:1.10.10.60 155 257 2.5E-17 T 15-10-2018 NJ56_02210 46caceca9ce98d9816a156a98c635738 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 221 236 9.7E-5 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_02210 46caceca9ce98d9816a156a98c635738 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 252 9.7E-5 T 15-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NJ56_02210 46caceca9ce98d9816a156a98c635738 261 Pfam PF12833 Helix-turn-helix domain 175 253 2.1E-12 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_02210 46caceca9ce98d9816a156a98c635738 261 SMART SM00342 169 252 2.9E-14 T 15-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NJ56_03085 746ea788faa2ddc151c61183505b4aa8 639 Gene3D G3DSA:1.10.1240.20 397 466 1.1E-27 T 15-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 NJ56_03085 746ea788faa2ddc151c61183505b4aa8 639 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 495 523 - T 15-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 NJ56_03085 746ea788faa2ddc151c61183505b4aa8 639 Pfam PF01464 Transglycosylase SLT domain 478 590 3.5E-33 T 15-10-2018 IPR008258 Transglycosylase SLT domain 1 NJ56_03085 746ea788faa2ddc151c61183505b4aa8 639 SUPERFAMILY SSF53955 473 632 5.32E-51 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_03085 746ea788faa2ddc151c61183505b4aa8 639 Gene3D G3DSA:1.25.20.10 23 383 1.1E-117 T 15-10-2018 NJ56_03085 746ea788faa2ddc151c61183505b4aa8 639 SUPERFAMILY SSF48435 23 471 1.03E-132 T 15-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 NJ56_03085 746ea788faa2ddc151c61183505b4aa8 639 Gene3D G3DSA:1.10.530.10 467 639 1.8E-52 T 15-10-2018 NJ56_03085 746ea788faa2ddc151c61183505b4aa8 639 Pfam PF14718 Soluble lytic murein transglycosylase L domain 400 466 1.4E-25 T 15-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 NJ56_13095 bebfbef17e312109ef65321ada4295ba 132 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 125 2.7E-39 T 15-10-2018 IPR003713 Flagellar protein FliS GO:0044780 NJ56_13095 bebfbef17e312109ef65321ada4295ba 132 Pfam PF02561 Flagellar protein FliS 8 125 1.4E-39 T 15-10-2018 IPR003713 Flagellar protein FliS GO:0044780 NJ56_13095 bebfbef17e312109ef65321ada4295ba 132 SUPERFAMILY SSF101116 8 130 5.89E-41 T 15-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 NJ56_13095 bebfbef17e312109ef65321ada4295ba 132 Gene3D G3DSA:1.20.120.340 2 128 1.1E-41 T 15-10-2018 NJ56_13095 bebfbef17e312109ef65321ada4295ba 132 PIRSF PIRSF039090 1 132 6.3E-43 T 15-10-2018 IPR003713 Flagellar protein FliS GO:0044780 NJ56_01335 cffa7422b3c6d939c4a4448211da322c 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 210 232 - T 15-10-2018 NJ56_01335 cffa7422b3c6d939c4a4448211da322c 273 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 15-10-2018 NJ56_01335 cffa7422b3c6d939c4a4448211da322c 273 Gene3D G3DSA:3.40.50.1000 6 254 6.0E-55 T 15-10-2018 IPR023214 HAD superfamily NJ56_01335 cffa7422b3c6d939c4a4448211da322c 273 SUPERFAMILY SSF56784 1 262 2.01E-61 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_01335 cffa7422b3c6d939c4a4448211da322c 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 229 8.5E-35 T 15-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 NJ56_01335 cffa7422b3c6d939c4a4448211da322c 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 258 1.8E-53 T 15-10-2018 NJ56_01335 cffa7422b3c6d939c4a4448211da322c 273 Hamap MF_01847 HMP-PP phosphatase [cof]. 1 273 61.225 T 15-10-2018 IPR023938 HMP-PP phosphatase GO:0016818 NJ56_01335 cffa7422b3c6d939c4a4448211da322c 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 258 5.1E-54 T 15-10-2018 IPR000150 Cof family GO:0016787 NJ56_01335 cffa7422b3c6d939c4a4448211da322c 273 Gene3D G3DSA:3.30.1240.10 82 184 6.0E-55 T 15-10-2018 NJ56_08375 a86a970181825ce9fee247e881544eb5 124 Pfam PF06476 Protein of unknown function (DUF1090) 16 120 1.2E-37 T 15-10-2018 IPR009468 Protein of unknown function DUF1090 NJ56_12840 306df61d0111d8715304491d78546cf7 270 SMART SM00862 22 101 3.5E-12 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_12840 306df61d0111d8715304491d78546cf7 270 SUPERFAMILY SSF46894 27 102 9.92E-15 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_12840 306df61d0111d8715304491d78546cf7 270 Gene3D G3DSA:1.10.10.10 9 124 7.3E-17 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_12840 306df61d0111d8715304491d78546cf7 270 Pfam PF00486 Transcriptional regulatory protein, C terminal 28 101 1.6E-13 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_15010 0022661687a571be3ff79ee608fecfe2 994 Pfam PF07520 Virulence factor SrfB 1 991 0.0 T 15-10-2018 IPR009216 Virulence factor SrfB NJ56_15010 0022661687a571be3ff79ee608fecfe2 994 SUPERFAMILY SSF53067 561 827 7.13E-5 T 15-10-2018 NJ56_15010 0022661687a571be3ff79ee608fecfe2 994 PIRSF PIRSF034585 1 994 0.0 T 15-10-2018 IPR009216 Virulence factor SrfB NJ56_05680 16f84332d3809e56267f85e37233ff4d 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 3.0E-48 T 15-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 NJ56_05680 16f84332d3809e56267f85e37233ff4d 105 SUPERFAMILY SSF47598 2 105 2.0E-57 T 15-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 NJ56_05680 16f84332d3809e56267f85e37233ff4d 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 2.3E-58 T 15-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 NJ56_05680 16f84332d3809e56267f85e37233ff4d 105 Gene3D G3DSA:1.10.140.10 2 105 4.2E-63 T 15-10-2018 IPR023453 Methionine repressor MetJ domain superfamily NJ56_05680 16f84332d3809e56267f85e37233ff4d 105 Hamap MF_00744 Met repressor [metJ]. 1 105 40.473 T 15-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 NJ56_12040 3737d01c0fd2530439e46462174f72ed 114 Pfam PF10828 Protein of unknown function (DUF2570) 17 110 1.2E-7 T 15-10-2018 IPR022538 Protein of unknown function DUF2570 NJ56_05365 5f8de2c9b7dcc83f325a5ba75e9570ed 246 Pfam PF00583 Acetyltransferase (GNAT) family 145 226 8.6E-12 T 15-10-2018 IPR000182 GNAT domain NJ56_05365 5f8de2c9b7dcc83f325a5ba75e9570ed 246 SUPERFAMILY SSF55729 42 235 1.29E-22 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_05365 5f8de2c9b7dcc83f325a5ba75e9570ed 246 TIGRFAM TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase 44 240 6.5E-96 T 15-10-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 MetaCyc: PWY-7315 NJ56_05365 5f8de2c9b7dcc83f325a5ba75e9570ed 246 Gene3D G3DSA:3.40.630.30 1 240 1.0E-70 T 15-10-2018 NJ56_05365 5f8de2c9b7dcc83f325a5ba75e9570ed 246 Hamap MF_02027 dTDP-fucosamine acetyltransferase [wecD]. 44 240 44.876 T 15-10-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 MetaCyc: PWY-7315 NJ56_13800 9fafcec34f027af55c6932ae78e0a080 500 Pfam PF13520 Amino acid permease 9 440 4.4E-66 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_13800 9fafcec34f027af55c6932ae78e0a080 500 Gene3D G3DSA:1.20.1740.10 5 486 1.5E-52 T 15-10-2018 NJ56_13800 9fafcec34f027af55c6932ae78e0a080 500 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 4 500 1.0E-152 T 15-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 NJ56_13800 9fafcec34f027af55c6932ae78e0a080 500 PIRSF PIRSF006060 1 500 9.6E-47 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 Gene3D G3DSA:3.30.565.10 2 217 3.3E-78 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 Gene3D G3DSA:3.30.230.80 229 401 1.8E-70 T 15-10-2018 NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 PIRSF PIRSF002583 1 624 2.7E-214 T 15-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 Hamap MF_00505 Chaperone protein HtpG [htpG]. 4 623 32.694 T 15-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 SUPERFAMILY SSF55874 6 214 6.55E-65 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 27 36 - T 15-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 Pfam PF00183 Hsp90 protein 215 623 1.9E-124 T 15-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 Gene3D G3DSA:3.40.50.11260 402 492 3.0E-36 T 15-10-2018 NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 SMART SM00387 29 186 3.8E-11 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 Gene3D G3DSA:1.20.120.790 493 624 1.9E-45 T 15-10-2018 IPR037196 HSP90, C-terminal domain NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 SUPERFAMILY SSF110942 510 623 5.36E-34 T 15-10-2018 IPR037196 HSP90, C-terminal domain NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 SUPERFAMILY SSF54211 229 485 7.21E-100 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 184 1.4E-12 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 PRINTS PR00775 90kDa heat shock protein signature 192 210 3.0E-64 T 15-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 PRINTS PR00775 90kDa heat shock protein signature 7 27 3.0E-64 T 15-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 PRINTS PR00775 90kDa heat shock protein signature 28 50 3.0E-64 T 15-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 PRINTS PR00775 90kDa heat shock protein signature 77 94 3.0E-64 T 15-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 PRINTS PR00775 90kDa heat shock protein signature 174 191 3.0E-64 T 15-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 PRINTS PR00775 90kDa heat shock protein signature 95 112 3.0E-64 T 15-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal NJ56_01175 3ead03779a5a04bd5700685b470a3984 624 PRINTS PR00775 90kDa heat shock protein signature 122 144 3.0E-64 T 15-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal NJ56_05855 bbabd6479c22480b6055561c24044ee2 398 Gene3D G3DSA:3.90.1150.10 38 388 7.7E-137 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_05855 bbabd6479c22480b6055561c24044ee2 398 SUPERFAMILY SSF53383 5 396 4.57E-123 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_05855 bbabd6479c22480b6055561c24044ee2 398 Pfam PF00155 Aminotransferase class I and II 43 386 5.3E-74 T 15-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NJ56_05855 bbabd6479c22480b6055561c24044ee2 398 Gene3D G3DSA:3.40.640.10 58 296 7.7E-137 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_05855 bbabd6479c22480b6055561c24044ee2 398 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 395 53.339 T 15-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 NJ56_05855 bbabd6479c22480b6055561c24044ee2 398 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 15-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 NJ56_05855 bbabd6479c22480b6055561c24044ee2 398 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 5 397 4.7E-217 T 15-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 NJ56_17930 51587c8f42375137751d0cba5ce57af8 1656 Pfam PF08751 TrwC relaxase 12 285 3.4E-74 T 15-10-2018 IPR014862 TrwC relaxase NJ56_17930 51587c8f42375137751d0cba5ce57af8 1656 SUPERFAMILY SSF55464 1 300 5.95E-74 T 15-10-2018 NJ56_17930 51587c8f42375137751d0cba5ce57af8 1656 Gene3D G3DSA:3.40.50.300 466 671 3.0E-32 T 15-10-2018 NJ56_17930 51587c8f42375137751d0cba5ce57af8 1656 Pfam PF13604 AAA domain 499 679 6.6E-42 T 15-10-2018 NJ56_17930 51587c8f42375137751d0cba5ce57af8 1656 Pfam PF13604 AAA domain 1108 1285 8.8E-10 T 15-10-2018 NJ56_17930 51587c8f42375137751d0cba5ce57af8 1656 Gene3D G3DSA:2.30.30.940 819 884 2.1E-12 T 15-10-2018 NJ56_17930 51587c8f42375137751d0cba5ce57af8 1656 SUPERFAMILY SSF52540 608 939 5.31E-29 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17930 51587c8f42375137751d0cba5ce57af8 1656 Gene3D G3DSA:3.40.50.300 885 947 2.1E-12 T 15-10-2018 NJ56_17930 51587c8f42375137751d0cba5ce57af8 1656 SUPERFAMILY SSF52540 495 632 5.63E-20 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17930 51587c8f42375137751d0cba5ce57af8 1656 TIGRFAM TIGR02686 relax_trwC: conjugative relaxase domain 13 290 9.4E-79 T 15-10-2018 IPR014059 Conjugative relaxase, N-terminal NJ56_13135 c9ed0d352a8ea37f590dbdf2380c036a 266 SMART SM00062 42 263 1.0E-83 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_13135 c9ed0d352a8ea37f590dbdf2380c036a 266 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 65 78 - T 15-10-2018 IPR018313 Solute-binding protein family 3, conserved site NJ56_13135 c9ed0d352a8ea37f590dbdf2380c036a 266 Gene3D G3DSA:3.40.190.10 126 225 7.8E-72 T 15-10-2018 NJ56_13135 c9ed0d352a8ea37f590dbdf2380c036a 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 261 1.6E-71 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_13135 c9ed0d352a8ea37f590dbdf2380c036a 266 Gene3D G3DSA:3.40.190.10 40 260 7.8E-72 T 15-10-2018 NJ56_13135 c9ed0d352a8ea37f590dbdf2380c036a 266 SUPERFAMILY SSF53850 14 263 1.6E-76 T 15-10-2018 NJ56_13135 c9ed0d352a8ea37f590dbdf2380c036a 266 SMART SM00079 42 262 1.0E-4 T 15-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 NJ56_16635 f299c7153d517edd90dd4ff0c86a5cc1 507 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 7 497 1.8E-111 T 15-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 NJ56_16635 f299c7153d517edd90dd4ff0c86a5cc1 507 Pfam PF00854 POT family 87 460 1.8E-63 T 15-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 NJ56_16635 f299c7153d517edd90dd4ff0c86a5cc1 507 Gene3D G3DSA:1.20.1250.20 1 497 1.8E-153 T 15-10-2018 NJ56_16635 f299c7153d517edd90dd4ff0c86a5cc1 507 SUPERFAMILY SSF103473 9 494 1.92E-32 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_16635 f299c7153d517edd90dd4ff0c86a5cc1 507 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 151 163 - T 15-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 NJ56_16635 f299c7153d517edd90dd4ff0c86a5cc1 507 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 75 99 - T 15-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 NJ56_00130 5123628d64391cc655c7049989b461f8 384 Gene3D G3DSA:3.40.640.10 57 284 2.8E-131 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_00130 5123628d64391cc655c7049989b461f8 384 SUPERFAMILY SSF53383 3 378 2.18E-105 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_00130 5123628d64391cc655c7049989b461f8 384 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 233 242 - T 15-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 NJ56_00130 5123628d64391cc655c7049989b461f8 384 Gene3D G3DSA:3.90.1150.10 40 376 2.8E-131 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_00130 5123628d64391cc655c7049989b461f8 384 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 20 378 4.4E-138 T 15-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 NJ56_00130 5123628d64391cc655c7049989b461f8 384 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 3 382 48.85 T 15-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 NJ56_00130 5123628d64391cc655c7049989b461f8 384 Pfam PF00155 Aminotransferase class I and II 41 378 1.4E-63 T 15-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NJ56_14745 9128b0cffefc74529edca7bf3d349dff 152 Pfam PF08808 RES domain 3 147 1.1E-26 T 15-10-2018 IPR014914 RES domain NJ56_14745 9128b0cffefc74529edca7bf3d349dff 152 SMART SM00953 15 140 1.5E-28 T 15-10-2018 IPR014914 RES domain NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 48.253 T 15-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.2E-5 T 15-10-2018 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 PRINTS PR00097 Anthranilate synthase component II signature 236 245 1.2E-5 T 15-10-2018 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.2E-5 T 15-10-2018 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 Gene3D G3DSA:3.40.50.880 152 379 2.4E-76 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 3.3E-11 T 15-10-2018 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 3.3E-11 T 15-10-2018 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 3.3E-11 T 15-10-2018 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 SMART SM01097 3 133 1.1E-90 T 15-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 SUPERFAMILY SSF52317 153 377 5.5E-64 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 9.9E-41 T 15-10-2018 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 9.9E-41 T 15-10-2018 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 9.9E-41 T 15-10-2018 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 9.9E-41 T 15-10-2018 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 9.9E-41 T 15-10-2018 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 SUPERFAMILY SSF52021 3 143 8.63E-57 T 15-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 Pfam PF00117 Glutamine amidotransferase class-I 197 372 7.1E-49 T 15-10-2018 IPR017926 Glutamine amidotransferase NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 1.1E-149 T 15-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 7.1E-52 T 15-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_02940 f0ab8526e87f7ccd514d483ba59735bb 387 Gene3D G3DSA:3.50.30.20 2 151 5.2E-61 T 15-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 NJ56_16135 048043e63b1740033da2de0c4103a8e9 265 SUPERFAMILY SSF56770 37 168 1.22E-48 T 15-10-2018 NJ56_16135 048043e63b1740033da2de0c4103a8e9 265 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 49 158 2.1E-21 T 15-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16135 048043e63b1740033da2de0c4103a8e9 265 Gene3D G3DSA:3.40.50.12280 19 185 4.5E-51 T 15-10-2018 NJ56_16135 048043e63b1740033da2de0c4103a8e9 265 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 132 148 - T 15-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16735 d15fe1fe927915ebe8b32cbcbab02f4c 168 Hamap MF_01179 Cell division inhibitor SulA [sulA]. 1 168 40.293 T 15-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 NJ56_16735 d15fe1fe927915ebe8b32cbcbab02f4c 168 PIRSF PIRSF003093 1 168 5.9E-81 T 15-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 NJ56_16735 d15fe1fe927915ebe8b32cbcbab02f4c 168 Gene3D G3DSA:3.40.50.300 33 145 7.9E-28 T 15-10-2018 NJ56_16735 d15fe1fe927915ebe8b32cbcbab02f4c 168 Pfam PF03846 Cell division inhibitor SulA 8 120 1.7E-53 T 15-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 NJ56_16735 d15fe1fe927915ebe8b32cbcbab02f4c 168 SUPERFAMILY SSF52540 32 146 1.75E-33 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05915 e52643e0a866523ba15f6cb0141d95d2 404 Pfam PF02441 Flavoprotein 7 176 1.6E-42 T 15-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 NJ56_05915 e52643e0a866523ba15f6cb0141d95d2 404 Gene3D G3DSA:3.40.50.10300 187 404 1.7E-87 T 15-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 NJ56_05915 e52643e0a866523ba15f6cb0141d95d2 404 SUPERFAMILY SSF52507 3 180 1.05E-57 T 15-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 NJ56_05915 e52643e0a866523ba15f6cb0141d95d2 404 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 188 369 1.5E-74 T 15-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 NJ56_05915 e52643e0a866523ba15f6cb0141d95d2 404 Gene3D G3DSA:3.40.50.1950 1 186 1.7E-53 T 15-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 NJ56_05915 e52643e0a866523ba15f6cb0141d95d2 404 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 5 395 8.5E-160 T 15-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 NJ56_05915 e52643e0a866523ba15f6cb0141d95d2 404 SUPERFAMILY SSF102645 185 400 6.93E-81 T 15-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 NJ56_08895 f717aec1f69ac6ebb80fde599dd17616 735 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 85 733 1.0E-125 T 15-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 NJ56_08895 f717aec1f69ac6ebb80fde599dd17616 735 Pfam PF00593 TonB dependent receptor 272 734 2.6E-54 T 15-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel NJ56_08895 f717aec1f69ac6ebb80fde599dd17616 735 SUPERFAMILY SSF56935 75 735 2.35E-133 T 15-10-2018 NJ56_08895 f717aec1f69ac6ebb80fde599dd17616 735 Gene3D G3DSA:2.40.170.20 197 735 4.5E-129 T 15-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NJ56_08895 f717aec1f69ac6ebb80fde599dd17616 735 Pfam PF07715 TonB-dependent Receptor Plug Domain 84 185 1.9E-21 T 15-10-2018 IPR012910 TonB-dependent receptor, plug domain NJ56_08895 f717aec1f69ac6ebb80fde599dd17616 735 Gene3D G3DSA:2.170.130.10 60 196 3.7E-40 T 15-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily NJ56_15970 4c2aa7302b2737e50cd6196270651839 313 SUPERFAMILY SSF51735 99 279 1.03E-42 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_15970 4c2aa7302b2737e50cd6196270651839 313 Gene3D G3DSA:3.40.50.720 15 308 1.0E-108 T 15-10-2018 NJ56_15970 4c2aa7302b2737e50cd6196270651839 313 Gene3D G3DSA:3.40.50.720 95 279 1.0E-108 T 15-10-2018 NJ56_15970 4c2aa7302b2737e50cd6196270651839 313 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 278 8.4E-42 T 15-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 NJ56_12815 00416d794871372622956af90f3046d6 290 PRINTS PR00996 Glutamate methyltransferase family signature 121 141 2.6E-45 T 15-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NJ56_12815 00416d794871372622956af90f3046d6 290 PRINTS PR00996 Glutamate methyltransferase family signature 246 269 2.6E-45 T 15-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NJ56_12815 00416d794871372622956af90f3046d6 290 PRINTS PR00996 Glutamate methyltransferase family signature 49 62 2.6E-45 T 15-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NJ56_12815 00416d794871372622956af90f3046d6 290 PRINTS PR00996 Glutamate methyltransferase family signature 155 171 2.6E-45 T 15-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NJ56_12815 00416d794871372622956af90f3046d6 290 PRINTS PR00996 Glutamate methyltransferase family signature 227 241 2.6E-45 T 15-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NJ56_12815 00416d794871372622956af90f3046d6 290 PRINTS PR00996 Glutamate methyltransferase family signature 88 100 2.6E-45 T 15-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NJ56_12815 00416d794871372622956af90f3046d6 290 Pfam PF01739 CheR methyltransferase, SAM binding domain 95 282 7.1E-58 T 15-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal NJ56_12815 00416d794871372622956af90f3046d6 290 Gene3D G3DSA:3.40.50.150 94 287 2.2E-71 T 15-10-2018 NJ56_12815 00416d794871372622956af90f3046d6 290 Gene3D G3DSA:1.10.155.10 14 93 1.7E-32 T 15-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily NJ56_12815 00416d794871372622956af90f3046d6 290 SUPERFAMILY SSF53335 95 284 1.84E-59 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_12815 00416d794871372622956af90f3046d6 290 SUPERFAMILY SSF47757 19 94 1.96E-24 T 15-10-2018 NJ56_12815 00416d794871372622956af90f3046d6 290 SMART SM00138 27 287 1.4E-113 T 15-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NJ56_12815 00416d794871372622956af90f3046d6 290 Pfam PF03705 CheR methyltransferase, all-alpha domain 29 80 1.8E-18 T 15-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal NJ56_12815 00416d794871372622956af90f3046d6 290 PIRSF PIRSF000410 10 288 1.0E-98 T 15-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR NJ56_12335 5d7a94ef013f4284bbf9c7c4ae73beee 558 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 105 188 9.1E-40 T 15-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 NJ56_12335 5d7a94ef013f4284bbf9c7c4ae73beee 558 Pfam PF02378 Phosphotransferase system, EIIC 229 492 2.7E-16 T 15-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 NJ56_12335 5d7a94ef013f4284bbf9c7c4ae73beee 558 Gene3D G3DSA:3.40.50.2300 95 204 3.6E-38 T 15-10-2018 NJ56_12335 5d7a94ef013f4284bbf9c7c4ae73beee 558 SUPERFAMILY SSF52794 103 203 1.71E-34 T 15-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 NJ56_12335 5d7a94ef013f4284bbf9c7c4ae73beee 558 SUPERFAMILY SSF52794 4 88 3.4E-9 T 15-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 NJ56_12335 5d7a94ef013f4284bbf9c7c4ae73beee 558 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 216 548 1.6E-144 T 15-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 NJ56_12335 5d7a94ef013f4284bbf9c7c4ae73beee 558 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 106 187 4.3E-18 T 15-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 NJ56_12360 f4e74e313287a9278385e6059b83be7a 290 Pfam PF03466 LysR substrate binding domain 87 288 8.4E-49 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_12360 f4e74e313287a9278385e6059b83be7a 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 5.9E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_12360 f4e74e313287a9278385e6059b83be7a 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 5.9E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_12360 f4e74e313287a9278385e6059b83be7a 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 5.9E-6 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_12360 f4e74e313287a9278385e6059b83be7a 290 SUPERFAMILY SSF53850 89 289 5.73E-48 T 15-10-2018 NJ56_12360 f4e74e313287a9278385e6059b83be7a 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.2E-15 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_12360 f4e74e313287a9278385e6059b83be7a 290 SUPERFAMILY SSF46785 2 109 3.97E-19 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_12360 f4e74e313287a9278385e6059b83be7a 290 Gene3D G3DSA:3.40.190.290 89 289 3.0E-46 T 15-10-2018 NJ56_12360 f4e74e313287a9278385e6059b83be7a 290 Gene3D G3DSA:1.10.10.10 1 84 1.0E-19 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_12440 17ce6119d47b3cb41f024902fcd6b5a4 245 Gene3D G3DSA:3.40.50.10140 128 241 2.0E-17 T 15-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily NJ56_12440 17ce6119d47b3cb41f024902fcd6b5a4 245 SUPERFAMILY SSF52200 131 231 1.26E-13 T 15-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily NJ56_12440 17ce6119d47b3cb41f024902fcd6b5a4 245 Pfam PF13676 TIR domain 136 233 4.2E-15 T 15-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 NJ56_11370 07292acb0259d6819ecb02a1f8abded6 403 Gene3D G3DSA:1.25.40.10 152 296 1.2E-19 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_11370 07292acb0259d6819ecb02a1f8abded6 403 Pfam PF14559 Tetratricopeptide repeat 175 242 5.0E-11 T 15-10-2018 NJ56_11370 07292acb0259d6819ecb02a1f8abded6 403 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 2 112 6.9E-27 T 15-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI NJ56_11370 07292acb0259d6819ecb02a1f8abded6 403 SUPERFAMILY SSF48452 161 266 8.47E-18 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_15520 61acc60adcb2a9dab404c9dde1e4b482 153 Pfam PF02810 SEC-C motif 136 153 6.2E-9 T 15-10-2018 IPR004027 SEC-C motif NJ56_15520 61acc60adcb2a9dab404c9dde1e4b482 153 Pfam PF02810 SEC-C motif 3 19 5.7E-5 T 15-10-2018 IPR004027 SEC-C motif NJ56_15520 61acc60adcb2a9dab404c9dde1e4b482 153 Gene3D G3DSA:3.10.450.50 2 153 2.8E-52 T 15-10-2018 NJ56_15520 61acc60adcb2a9dab404c9dde1e4b482 153 SUPERFAMILY SSF103642 133 153 2.62E-7 T 15-10-2018 NJ56_15520 61acc60adcb2a9dab404c9dde1e4b482 153 SUPERFAMILY SSF54427 25 130 8.76E-34 T 15-10-2018 IPR032710 NTF2-like domain superfamily NJ56_15520 61acc60adcb2a9dab404c9dde1e4b482 153 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 1 130 27.26 T 15-10-2018 IPR023006 Uncharacterised protein family UPF0225 NJ56_14775 1a9aa02eb84125a24cac6cefe733096e 538 SUPERFAMILY SSF53850 31 530 2.76E-143 T 15-10-2018 NJ56_14775 1a9aa02eb84125a24cac6cefe733096e 538 Gene3D G3DSA:3.40.190.10 41 519 2.6E-193 T 15-10-2018 NJ56_14775 1a9aa02eb84125a24cac6cefe733096e 538 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 455 2.9E-91 T 15-10-2018 IPR000914 Solute-binding protein family 5 domain NJ56_14775 1a9aa02eb84125a24cac6cefe733096e 538 Gene3D G3DSA:3.10.105.10 292 507 2.6E-193 T 15-10-2018 NJ56_14775 1a9aa02eb84125a24cac6cefe733096e 538 PIRSF PIRSF002741 3 537 5.4E-116 T 15-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 NJ56_14775 1a9aa02eb84125a24cac6cefe733096e 538 Gene3D G3DSA:3.90.76.10 67 190 2.6E-193 T 15-10-2018 NJ56_04635 5e4710f46b7049dc27a30f89e00314d9 652 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 643 0.0 T 15-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 NJ56_04635 5e4710f46b7049dc27a30f89e00314d9 652 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 4.0E-26 T 15-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain NJ56_04635 5e4710f46b7049dc27a30f89e00314d9 652 Gene3D G3DSA:3.30.300.30 518 652 3.6E-34 T 15-10-2018 NJ56_04635 5e4710f46b7049dc27a30f89e00314d9 652 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 15-10-2018 IPR020845 AMP-binding, conserved site NJ56_04635 5e4710f46b7049dc27a30f89e00314d9 652 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 52.978 T 15-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 NJ56_04635 5e4710f46b7049dc27a30f89e00314d9 652 SUPERFAMILY SSF56801 12 643 3.14E-187 T 15-10-2018 NJ56_04635 5e4710f46b7049dc27a30f89e00314d9 652 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 8.4E-20 T 15-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 NJ56_04635 5e4710f46b7049dc27a30f89e00314d9 652 Pfam PF00501 AMP-binding enzyme 84 522 3.9E-91 T 15-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 NJ56_04635 5e4710f46b7049dc27a30f89e00314d9 652 Gene3D G3DSA:3.40.50.12780 53 515 2.9E-103 T 15-10-2018 NJ56_12310 37c2cf59f0a84f4212c84930145c5aa6 826 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 506 523 - T 15-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 NJ56_12310 37c2cf59f0a84f4212c84930145c5aa6 826 Gene3D G3DSA:3.40.50.740 105 572 3.1E-234 T 15-10-2018 NJ56_12310 37c2cf59f0a84f4212c84930145c5aa6 826 Pfam PF00384 Molybdopterin oxidoreductase 105 563 3.3E-95 T 15-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_12310 37c2cf59f0a84f4212c84930145c5aa6 826 Pfam PF01568 Molydopterin dinucleotide binding domain 683 797 8.9E-26 T 15-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 NJ56_12310 37c2cf59f0a84f4212c84930145c5aa6 826 SUPERFAMILY SSF50692 675 820 1.72E-39 T 15-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily NJ56_12310 37c2cf59f0a84f4212c84930145c5aa6 826 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 62 823 0.0 T 15-10-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 NJ56_12310 37c2cf59f0a84f4212c84930145c5aa6 826 Gene3D G3DSA:2.40.40.20 657 820 7.7E-51 T 15-10-2018 NJ56_12310 37c2cf59f0a84f4212c84930145c5aa6 826 Gene3D G3DSA:3.90.55.10 61 623 3.1E-234 T 15-10-2018 NJ56_12310 37c2cf59f0a84f4212c84930145c5aa6 826 Gene3D G3DSA:3.40.228.10 198 649 3.1E-234 T 15-10-2018 NJ56_12310 37c2cf59f0a84f4212c84930145c5aa6 826 SUPERFAMILY SSF53706 63 683 1.14E-170 T 15-10-2018 NJ56_14325 d73581bf9ce276a935b8bec265f8c49b 253 SMART SM00382 23 212 1.1E-7 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_14325 d73581bf9ce276a935b8bec265f8c49b 253 Pfam PF00005 ABC transporter 16 164 1.0E-16 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_14325 d73581bf9ce276a935b8bec265f8c49b 253 SUPERFAMILY SSF52540 15 227 1.52E-43 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_14325 d73581bf9ce276a935b8bec265f8c49b 253 Gene3D G3DSA:3.40.50.300 6 251 1.5E-52 T 15-10-2018 NJ56_14325 d73581bf9ce276a935b8bec265f8c49b 253 Hamap MF_01005 Vitamin B12 import ATP-binding protein BtuD [btuD]. 2 250 45.336 T 15-10-2018 IPR023693 ABC transporter, vitamin B12, BtuD GO:0005524|GO:0015889|GO:0016887 NJ56_14325 d73581bf9ce276a935b8bec265f8c49b 253 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_15190 e276311eaab626a2a17777d4a3cfa005 71 Pfam PF05433 Glycine zipper 2TM domain 34 70 6.6E-7 T 15-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 NJ56_08170 c3b37be94bc507d27db8f4fa4f748855 181 Gene3D G3DSA:2.60.450.10 25 162 3.0E-51 T 15-10-2018 NJ56_08170 c3b37be94bc507d27db8f4fa4f748855 181 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 25 164 1.6E-47 T 15-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 NJ56_08170 c3b37be94bc507d27db8f4fa4f748855 181 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 5 165 25.641 T 15-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 NJ56_08170 c3b37be94bc507d27db8f4fa4f748855 181 Pfam PF03968 OstA-like protein 35 146 8.8E-28 T 15-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal NJ56_07120 0e8b9742d911db899897cfbd34643b69 224 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 15-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 NJ56_07120 0e8b9742d911db899897cfbd34643b69 224 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 4.2E-99 T 15-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 NJ56_07120 0e8b9742d911db899897cfbd34643b69 224 Gene3D G3DSA:3.20.20.70 4 221 1.2E-83 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_07120 0e8b9742d911db899897cfbd34643b69 224 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 1.6E-93 T 15-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 NJ56_07120 0e8b9742d911db899897cfbd34643b69 224 SUPERFAMILY SSF51366 3 218 2.51E-76 T 15-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 NJ56_07120 0e8b9742d911db899897cfbd34643b69 224 PIRSF PIRSF001461 1 223 1.0E-107 T 15-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 NJ56_07120 0e8b9742d911db899897cfbd34643b69 224 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 15-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 NJ56_05790 02fea86bc3f4d5bcdd74678bac115082 164 PIRSF PIRSF034445 1 153 1.1E-33 T 15-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 NJ56_05790 02fea86bc3f4d5bcdd74678bac115082 164 Gene3D G3DSA:1.20.120.1490 48 155 1.5E-39 T 15-10-2018 NJ56_05790 02fea86bc3f4d5bcdd74678bac115082 164 Pfam PF07813 LTXXQ motif family protein 46 143 5.5E-22 T 15-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 NJ56_17315 6713b58625ce4ae825a9ec189ac5c42e 370 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 107 350 2.8E-98 T 15-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 NJ56_17315 6713b58625ce4ae825a9ec189ac5c42e 370 SUPERFAMILY SSF52540 109 356 1.02E-55 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17315 6713b58625ce4ae825a9ec189ac5c42e 370 ProSitePatterns PS01215 Mrp family signature. 214 230 - T 15-10-2018 IPR000808 Mrp, conserved site GO:0005524 NJ56_17315 6713b58625ce4ae825a9ec189ac5c42e 370 Hamap MF_02040 Iron-sulfur cluster carrier protein. 102 351 36.576 T 15-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein NJ56_17315 6713b58625ce4ae825a9ec189ac5c42e 370 SUPERFAMILY SSF117916 14 85 5.89E-5 T 15-10-2018 IPR034904 Fe-S cluster assembly domain superfamily NJ56_17315 6713b58625ce4ae825a9ec189ac5c42e 370 Gene3D G3DSA:3.40.50.300 96 349 2.1E-78 T 15-10-2018 NJ56_02980 d3f5f4598b494962ed82f97009ca0d36 87 Pfam PF01649 Ribosomal protein S20 2 84 3.6E-28 T 15-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_02980 d3f5f4598b494962ed82f97009ca0d36 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 4.1E-33 T 15-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_02980 d3f5f4598b494962ed82f97009ca0d36 87 Gene3D G3DSA:1.20.58.110 1 87 1.8E-31 T 15-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_02980 d3f5f4598b494962ed82f97009ca0d36 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.554 T 15-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_02980 d3f5f4598b494962ed82f97009ca0d36 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 87 2.0E-35 T 15-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_02980 d3f5f4598b494962ed82f97009ca0d36 87 SUPERFAMILY SSF46992 3 86 7.19E-32 T 15-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_07135 a1184666688733cf9184d59143773b37 473 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 15-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_07135 a1184666688733cf9184d59143773b37 473 Pfam PF14824 Sirohaem biosynthesis protein central 121 146 7.9E-9 T 15-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_07135 a1184666688733cf9184d59143773b37 473 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 15-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_07135 a1184666688733cf9184d59143773b37 473 Pfam PF13241 Putative NAD(P)-binding 6 115 2.4E-23 T 15-10-2018 NJ56_07135 a1184666688733cf9184d59143773b37 473 Gene3D G3DSA:3.30.160.110 113 148 4.1E-20 T 15-10-2018 NJ56_07135 a1184666688733cf9184d59143773b37 473 SUPERFAMILY SSF53790 215 461 1.96E-78 T 15-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 NJ56_07135 a1184666688733cf9184d59143773b37 473 SUPERFAMILY SSF51735 1 112 1.91E-24 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_07135 a1184666688733cf9184d59143773b37 473 Gene3D G3DSA:3.30.950.10 332 472 4.0E-46 T 15-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 NJ56_07135 a1184666688733cf9184d59143773b37 473 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 51.027 T 15-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_07135 a1184666688733cf9184d59143773b37 473 Gene3D G3DSA:1.10.8.210 149 213 9.9E-27 T 15-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_07135 a1184666688733cf9184d59143773b37 473 PIRSF PIRSF036426 1 465 1.5E-201 T 15-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_07135 a1184666688733cf9184d59143773b37 473 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 206 4.5E-70 T 15-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_07135 a1184666688733cf9184d59143773b37 473 Gene3D G3DSA:3.40.1010.10 215 331 2.2E-43 T 15-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 NJ56_07135 a1184666688733cf9184d59143773b37 473 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 426 5.0E-47 T 15-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 NJ56_07135 a1184666688733cf9184d59143773b37 473 Pfam PF10414 Sirohaem synthase dimerisation region 150 208 4.1E-18 T 15-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_07135 a1184666688733cf9184d59143773b37 473 Gene3D G3DSA:3.40.50.720 1 112 7.3E-29 T 15-10-2018 NJ56_07135 a1184666688733cf9184d59143773b37 473 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 448 1.9E-92 T 15-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 NJ56_07135 a1184666688733cf9184d59143773b37 473 SUPERFAMILY SSF75615 114 207 5.36E-27 T 15-10-2018 NJ56_10020 ff6d7820e478c62c5be9b925ec949158 286 Pfam PF12146 Serine aminopeptidase, S33 23 262 5.1E-21 T 15-10-2018 IPR022742 Serine aminopeptidase, S33 NJ56_10020 ff6d7820e478c62c5be9b925ec949158 286 Gene3D G3DSA:3.40.50.1820 22 267 2.4E-40 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_10020 ff6d7820e478c62c5be9b925ec949158 286 Gene3D G3DSA:1.10.10.800 134 212 2.4E-40 T 15-10-2018 NJ56_10020 ff6d7820e478c62c5be9b925ec949158 286 SUPERFAMILY SSF53474 5 286 1.3E-44 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_02070 7cfb6086b302899ecad4ac8856d9c1af 201 SUPERFAMILY SSF54523 40 196 3.45E-43 T 15-10-2018 NJ56_02070 7cfb6086b302899ecad4ac8856d9c1af 201 Gene3D G3DSA:2.10.70.20 150 198 2.6E-11 T 15-10-2018 NJ56_02070 7cfb6086b302899ecad4ac8856d9c1af 201 Gene3D G3DSA:3.10.610.10 38 146 5.1E-18 T 15-10-2018 NJ56_02070 7cfb6086b302899ecad4ac8856d9c1af 201 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 7 193 1.3E-47 T 15-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 NJ56_02070 7cfb6086b302899ecad4ac8856d9c1af 201 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 24 3.7E-7 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_02070 7cfb6086b302899ecad4ac8856d9c1af 201 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 28 2.4E-8 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_02070 7cfb6086b302899ecad4ac8856d9c1af 201 Pfam PF11612 Type II secretion system (T2SS), protein J 59 192 1.2E-26 T 15-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 NJ56_11605 d8e5fecd15534cd3f340c1cf7d9700e0 95 SUPERFAMILY SSF52794 1 86 8.63E-19 T 15-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 NJ56_11605 d8e5fecd15534cd3f340c1cf7d9700e0 95 Gene3D G3DSA:3.40.50.2300 1 90 1.4E-19 T 15-10-2018 NJ56_11605 d8e5fecd15534cd3f340c1cf7d9700e0 95 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 85 3.3E-11 T 15-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 SUPERFAMILY SSF51735 2 258 1.31E-63 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 Gene3D G3DSA:3.40.50.720 1 258 3.6E-62 T 15-10-2018 NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.5E-9 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.5E-9 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.5E-9 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 15-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.0E-19 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.0E-19 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.0E-19 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 2.0E-19 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.0E-19 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_09010 e649cb679fd802cdf98a354c69b3bb73 259 Pfam PF00106 short chain dehydrogenase 3 197 2.9E-48 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_10955 43e2c1d7245b35e66768de9a337cf601 92 PIRSF PIRSF037266 1 92 7.2E-39 T 15-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 NJ56_10955 43e2c1d7245b35e66768de9a337cf601 92 Gene3D G3DSA:1.10.10.10 2 92 2.1E-33 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_10955 43e2c1d7245b35e66768de9a337cf601 92 Pfam PF09904 Winged helix-turn helix 3 90 2.2E-37 T 15-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 NJ56_11385 826d56f6a57819ad694de646dea9dde6 98 Gene3D G3DSA:3.30.70.860 27 98 1.3E-27 T 15-10-2018 IPR035571 UPF0234-like, C-terminal NJ56_11385 826d56f6a57819ad694de646dea9dde6 98 Pfam PF04175 Protein of unknown function (DUF406) 8 98 1.3E-39 T 15-10-2018 IPR005272 Conserved hypothetical protein CHP00743 NJ56_11385 826d56f6a57819ad694de646dea9dde6 98 TIGRFAM TIGR00743 TIGR00743: conserved hypothetical protein 5 98 1.4E-40 T 15-10-2018 IPR005272 Conserved hypothetical protein CHP00743 NJ56_15250 cc4d4d0e81a8f9d9b23b53a8a13e0baf 324 Gene3D G3DSA:3.40.190.10 92 303 9.0E-100 T 15-10-2018 NJ56_15250 cc4d4d0e81a8f9d9b23b53a8a13e0baf 324 Gene3D G3DSA:3.40.190.10 167 267 9.0E-100 T 15-10-2018 NJ56_15250 cc4d4d0e81a8f9d9b23b53a8a13e0baf 324 SUPERFAMILY SSF53850 91 322 2.74E-43 T 15-10-2018 NJ56_15250 cc4d4d0e81a8f9d9b23b53a8a13e0baf 324 Gene3D G3DSA:1.10.10.10 1 86 1.1E-20 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_15250 cc4d4d0e81a8f9d9b23b53a8a13e0baf 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.7E-7 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_15250 cc4d4d0e81a8f9d9b23b53a8a13e0baf 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.7E-7 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_15250 cc4d4d0e81a8f9d9b23b53a8a13e0baf 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.7E-7 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_15250 cc4d4d0e81a8f9d9b23b53a8a13e0baf 324 Pfam PF03466 LysR substrate binding domain 92 288 1.4E-40 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_15250 cc4d4d0e81a8f9d9b23b53a8a13e0baf 324 SUPERFAMILY SSF46785 1 85 7.39E-13 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_15250 cc4d4d0e81a8f9d9b23b53a8a13e0baf 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 1.4E-14 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_00400 22bc5de683102ec87b8b60a9be148b2c 316 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 303 9.1E-116 T 15-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B NJ56_00400 22bc5de683102ec87b8b60a9be148b2c 316 SMART SM00797 23 298 1.7E-136 T 15-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B NJ56_00400 22bc5de683102ec87b8b60a9be148b2c 316 SUPERFAMILY SSF50891 173 287 5.69E-10 T 15-10-2018 IPR029000 Cyclophilin-like domain superfamily NJ56_00400 22bc5de683102ec87b8b60a9be148b2c 316 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 24 281 8.3E-89 T 15-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B NJ56_00400 22bc5de683102ec87b8b60a9be148b2c 316 Gene3D G3DSA:2.40.100.10 170 308 5.5E-54 T 15-10-2018 IPR029000 Cyclophilin-like domain superfamily NJ56_11425 175df77a506eb24169969786a6d858ab 275 SUPERFAMILY SSF55166 21 271 1.02E-98 T 15-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 NJ56_11425 175df77a506eb24169969786a6d858ab 275 PIRSF PIRSF018455 1 275 2.5E-116 T 15-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 NJ56_11425 175df77a506eb24169969786a6d858ab 275 Pfam PF03411 Penicillin-insensitive murein endopeptidase 36 269 9.8E-96 T 15-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 NJ56_11425 175df77a506eb24169969786a6d858ab 275 Gene3D G3DSA:3.30.1380.10 20 273 1.3E-100 T 15-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 NJ56_16625 9d65db03453e05d0aaeab0df33908a50 306 PIRSF PIRSF026649 1 305 3.3E-98 T 15-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 NJ56_16625 9d65db03453e05d0aaeab0df33908a50 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 3 305 52.756 T 15-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 NJ56_16625 9d65db03453e05d0aaeab0df33908a50 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 4 305 2.9E-144 T 15-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 NJ56_16625 9d65db03453e05d0aaeab0df33908a50 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 296 7.6E-102 T 15-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 NJ56_08175 63454678fdc91e3ce3e83b7b761dcbe7 187 PIRSF PIRSF028513 1 187 2.9E-40 T 15-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 NJ56_08175 63454678fdc91e3ce3e83b7b761dcbe7 187 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 7 183 4.4E-55 T 15-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 NJ56_08175 63454678fdc91e3ce3e83b7b761dcbe7 187 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 4 186 27.227 T 15-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 NJ56_08175 63454678fdc91e3ce3e83b7b761dcbe7 187 Gene3D G3DSA:2.60.450.10 60 187 5.2E-49 T 15-10-2018 NJ56_08175 63454678fdc91e3ce3e83b7b761dcbe7 187 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 13 184 1.5E-54 T 15-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related NJ56_04885 26aefe408160cd0bbc2318ee5c452b06 233 Pfam PF00970 Oxidoreductase FAD-binding domain 6 96 8.8E-5 T 15-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 NJ56_04885 26aefe408160cd0bbc2318ee5c452b06 233 SUPERFAMILY SSF52343 100 231 6.29E-33 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_04885 26aefe408160cd0bbc2318ee5c452b06 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 31 43 1.2E-12 T 15-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 NJ56_04885 26aefe408160cd0bbc2318ee5c452b06 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 107 126 1.2E-12 T 15-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 NJ56_04885 26aefe408160cd0bbc2318ee5c452b06 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 141 1.2E-12 T 15-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 NJ56_04885 26aefe408160cd0bbc2318ee5c452b06 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 91 100 1.2E-12 T 15-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 NJ56_04885 26aefe408160cd0bbc2318ee5c452b06 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 47 54 1.2E-12 T 15-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 NJ56_04885 26aefe408160cd0bbc2318ee5c452b06 233 Gene3D G3DSA:2.40.30.10 2 98 1.1E-23 T 15-10-2018 NJ56_04885 26aefe408160cd0bbc2318ee5c452b06 233 Pfam PF00175 Oxidoreductase NAD-binding domain 108 211 1.7E-22 T 15-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 NJ56_04885 26aefe408160cd0bbc2318ee5c452b06 233 Gene3D G3DSA:3.40.50.80 99 233 1.2E-27 T 15-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NJ56_04885 26aefe408160cd0bbc2318ee5c452b06 233 SUPERFAMILY SSF63380 3 97 9.68E-21 T 15-10-2018 IPR017938 Riboflavin synthase-like beta-barrel NJ56_15415 ae8fdb5bdcfd15e0e4ec53dcc903284d 98 Pfam PF03795 YCII-related domain 1 95 1.9E-26 T 15-10-2018 IPR005545 YCII-related NJ56_15415 ae8fdb5bdcfd15e0e4ec53dcc903284d 98 Gene3D G3DSA:3.30.70.1060 1 98 6.5E-37 T 15-10-2018 NJ56_15415 ae8fdb5bdcfd15e0e4ec53dcc903284d 98 SUPERFAMILY SSF54909 1 98 5.36E-31 T 15-10-2018 IPR011008 Dimeric alpha-beta barrel NJ56_15435 567323f503a1b03aedbabc4f3adcfc20 486 Gene3D G3DSA:3.30.870.10 112 308 4.6E-35 T 15-10-2018 NJ56_15435 567323f503a1b03aedbabc4f3adcfc20 486 Pfam PF13396 Phospholipase_D-nuclease N-terminal 23 59 4.0E-7 T 15-10-2018 IPR027379 Cardiolipin synthase N-terminal NJ56_15435 567323f503a1b03aedbabc4f3adcfc20 486 Gene3D G3DSA:3.30.870.10 316 457 1.2E-25 T 15-10-2018 NJ56_15435 567323f503a1b03aedbabc4f3adcfc20 486 SUPERFAMILY SSF56024 273 473 1.19E-49 T 15-10-2018 NJ56_15435 567323f503a1b03aedbabc4f3adcfc20 486 Pfam PF13091 PLD-like domain 134 244 5.5E-11 T 15-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 NJ56_15435 567323f503a1b03aedbabc4f3adcfc20 486 Pfam PF13091 PLD-like domain 331 444 8.0E-24 T 15-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 NJ56_15435 567323f503a1b03aedbabc4f3adcfc20 486 SMART SM00155 219 246 7.1E-4 T 15-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 NJ56_15435 567323f503a1b03aedbabc4f3adcfc20 486 SMART SM00155 399 426 7.3E-5 T 15-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 NJ56_15435 567323f503a1b03aedbabc4f3adcfc20 486 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 6 486 1.5E-206 T 15-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 NJ56_15435 567323f503a1b03aedbabc4f3adcfc20 486 SUPERFAMILY SSF56024 67 315 1.13E-47 T 15-10-2018 NJ56_15435 567323f503a1b03aedbabc4f3adcfc20 486 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 486 52.056 T 15-10-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 NJ56_06435 7a0f5a800ec82cbf8e82ee7fca72e725 552 SUPERFAMILY SSF116726 292 360 1.57E-11 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_06435 7a0f5a800ec82cbf8e82ee7fca72e725 552 Pfam PF06826 Predicted Permease Membrane Region 374 546 7.5E-45 T 15-10-2018 IPR006512 YidE/YbjL duplication NJ56_06435 7a0f5a800ec82cbf8e82ee7fca72e725 552 Pfam PF06826 Predicted Permease Membrane Region 10 179 1.8E-46 T 15-10-2018 IPR006512 YidE/YbjL duplication NJ56_06435 7a0f5a800ec82cbf8e82ee7fca72e725 552 Gene3D G3DSA:3.30.70.1450 289 364 8.0E-10 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_06435 7a0f5a800ec82cbf8e82ee7fca72e725 552 Hamap MF_01016 Putative transport protein YidE [yidE]. 1 552 55.025 T 15-10-2018 IPR023018 Transport protein YidE, putative NJ56_06435 7a0f5a800ec82cbf8e82ee7fca72e725 552 SUPERFAMILY SSF116726 206 271 7.98E-9 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_06435 7a0f5a800ec82cbf8e82ee7fca72e725 552 Pfam PF02080 TrkA-C domain 293 358 9.4E-9 T 15-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NJ56_06435 7a0f5a800ec82cbf8e82ee7fca72e725 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 166 8.0E-44 T 15-10-2018 IPR006512 YidE/YbjL duplication NJ56_06435 7a0f5a800ec82cbf8e82ee7fca72e725 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 379 533 5.6E-49 T 15-10-2018 IPR006512 YidE/YbjL duplication NJ56_06435 7a0f5a800ec82cbf8e82ee7fca72e725 552 Gene3D G3DSA:3.30.70.1450 199 274 2.3E-7 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_02100 5ac58c15c3174cd63496c72f5d20734b 496 SUPERFAMILY SSF51055 434 476 1.03E-8 T 15-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 NJ56_02100 5ac58c15c3174cd63496c72f5d20734b 496 Gene3D G3DSA:2.10.10.20 434 496 1.3E-10 T 15-10-2018 NJ56_02100 5ac58c15c3174cd63496c72f5d20734b 496 SMART SM00495 437 489 3.9E-7 T 15-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 NJ56_02100 5ac58c15c3174cd63496c72f5d20734b 496 Gene3D G3DSA:2.70.50.50 18 193 1.0E-65 T 15-10-2018 NJ56_02100 5ac58c15c3174cd63496c72f5d20734b 496 Gene3D G3DSA:3.30.70.2150 202 310 4.6E-32 T 15-10-2018 NJ56_02100 5ac58c15c3174cd63496c72f5d20734b 496 SUPERFAMILY SSF81296 22 193 1.54E-50 T 15-10-2018 IPR014756 Immunoglobulin E-set NJ56_02100 5ac58c15c3174cd63496c72f5d20734b 496 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 22 189 1.8E-32 T 15-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal NJ56_02100 5ac58c15c3174cd63496c72f5d20734b 496 Gene3D G3DSA:2.60.40.2550 316 410 2.4E-13 T 15-10-2018 NJ56_10225 6000ed05cabd300431b0d33268f9e929 85 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 23 73 2.1E-20 T 15-10-2018 IPR010260 DNA-binding transcriptional activator AlpA NJ56_07955 0dc1846b188a2c22ed3c269a00feb4cb 484 Gene3D G3DSA:1.20.1730.10 25 478 4.9E-85 T 15-10-2018 IPR038377 Sodium/glucose symporter superfamily NJ56_07955 0dc1846b188a2c22ed3c269a00feb4cb 484 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 414 434 - T 15-10-2018 IPR018212 Sodium/solute symporter, conserved site NJ56_07955 0dc1846b188a2c22ed3c269a00feb4cb 484 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 432 8.5E-110 T 15-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 NJ56_07955 0dc1846b188a2c22ed3c269a00feb4cb 484 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 4 472 3.3E-239 T 15-10-2018 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0036376 NJ56_07955 0dc1846b188a2c22ed3c269a00feb4cb 484 Pfam PF00474 Sodium:solute symporter family 36 432 2.8E-133 T 15-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 NJ56_07955 0dc1846b188a2c22ed3c269a00feb4cb 484 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 155 180 - T 15-10-2018 IPR018212 Sodium/solute symporter, conserved site NJ56_11730 44a80aba0571b5c4b5ecaf8911e9a72b 485 Pfam PF00361 Proton-conducting membrane transporter 122 420 8.6E-84 T 15-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11730 44a80aba0571b5c4b5ecaf8911e9a72b 485 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 475 1.3E-133 T 15-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 NJ56_11730 44a80aba0571b5c4b5ecaf8911e9a72b 485 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 475 17.736 T 15-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 NJ56_04275 040f445cad0b753d65cde11d10556a5a 107 Gene3D G3DSA:3.30.70.120 1 107 1.6E-39 T 15-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal NJ56_04275 040f445cad0b753d65cde11d10556a5a 107 Hamap MF_01160 Divalent-cation tolerance protein CutA [cutA]. 1 107 37.08 T 15-10-2018 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria GO:0005507|GO:0005737 NJ56_04275 040f445cad0b753d65cde11d10556a5a 107 Pfam PF03091 CutA1 divalent ion tolerance protein 7 104 1.5E-33 T 15-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 NJ56_04275 040f445cad0b753d65cde11d10556a5a 107 SUPERFAMILY SSF54913 4 106 1.93E-35 T 15-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta NJ56_14275 bab6fcba33d4bb6df7d97fde81b81211 98 Gene3D G3DSA:4.10.520.10 1 98 4.2E-38 T 15-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 NJ56_14275 bab6fcba33d4bb6df7d97fde81b81211 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 97 5.7E-54 T 15-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 NJ56_14275 bab6fcba33d4bb6df7d97fde81b81211 98 Pfam PF00216 Bacterial DNA-binding protein 3 91 9.9E-31 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_14275 bab6fcba33d4bb6df7d97fde81b81211 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 31.086 T 15-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 NJ56_14275 bab6fcba33d4bb6df7d97fde81b81211 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 15-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 NJ56_14275 bab6fcba33d4bb6df7d97fde81b81211 98 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.1E-17 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_14275 bab6fcba33d4bb6df7d97fde81b81211 98 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.1E-17 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_14275 bab6fcba33d4bb6df7d97fde81b81211 98 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.1E-17 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_14275 bab6fcba33d4bb6df7d97fde81b81211 98 SUPERFAMILY SSF47729 3 93 1.62E-31 T 15-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 NJ56_14275 bab6fcba33d4bb6df7d97fde81b81211 98 SMART SM00411 3 92 2.2E-42 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_14960 7793a6b9dbc35f737183fd6e028868aa 250 Gene3D G3DSA:1.10.10.10 165 247 2.5E-27 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_14960 7793a6b9dbc35f737183fd6e028868aa 250 SMART SM00100 30 151 1.1E-21 T 15-10-2018 IPR000595 Cyclic nucleotide-binding domain NJ56_14960 7793a6b9dbc35f737183fd6e028868aa 250 Pfam PF13545 Crp-like helix-turn-helix domain 168 242 1.8E-17 T 15-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NJ56_14960 7793a6b9dbc35f737183fd6e028868aa 250 ProSitePatterns PS00042 Crp-type HTH domain signature. 195 218 - T 15-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 NJ56_14960 7793a6b9dbc35f737183fd6e028868aa 250 Gene3D G3DSA:2.60.120.10 43 164 6.8E-49 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_14960 7793a6b9dbc35f737183fd6e028868aa 250 SUPERFAMILY SSF51206 23 162 2.49E-31 T 15-10-2018 IPR018490 Cyclic nucleotide-binding-like NJ56_14960 7793a6b9dbc35f737183fd6e028868aa 250 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 224 2.5E-12 T 15-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NJ56_14960 7793a6b9dbc35f737183fd6e028868aa 250 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 209 2.5E-12 T 15-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NJ56_14960 7793a6b9dbc35f737183fd6e028868aa 250 SUPERFAMILY SSF46785 165 245 7.44E-21 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_14960 7793a6b9dbc35f737183fd6e028868aa 250 Pfam PF00027 Cyclic nucleotide-binding domain 51 132 1.1E-15 T 15-10-2018 IPR000595 Cyclic nucleotide-binding domain NJ56_14960 7793a6b9dbc35f737183fd6e028868aa 250 SMART SM00419 187 235 3.7E-14 T 15-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NJ56_05605 a5e963ea5e3d2c38397ed86527c6fd51 200 Pfam PF06438 Heme-binding protein A (HasA) 1 200 5.4E-67 T 15-10-2018 IPR010495 Haem-binding HasA NJ56_05605 a5e963ea5e3d2c38397ed86527c6fd51 200 SUPERFAMILY SSF54621 3 172 1.83E-46 T 15-10-2018 IPR036912 Haem-binding HasA superfamily NJ56_05605 a5e963ea5e3d2c38397ed86527c6fd51 200 Gene3D G3DSA:3.30.1500.10 1 188 6.6E-72 T 15-10-2018 IPR036912 Haem-binding HasA superfamily NJ56_07295 2d5db092079776673e1e5e07aebbc38b 72 Pfam PF04102 SlyX 7 72 1.1E-23 T 15-10-2018 IPR007236 SlyX NJ56_07295 2d5db092079776673e1e5e07aebbc38b 72 Hamap MF_00715 Protein SlyX [slyX]. 5 72 16.705 T 15-10-2018 IPR007236 SlyX NJ56_05165 d75d592a747fb59a51fc22083f4c4f23 423 PIRSF PIRSF000141 1 422 5.8E-170 T 15-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 NJ56_05165 d75d592a747fb59a51fc22083f4c4f23 423 Gene3D G3DSA:3.50.50.60 1 114 3.7E-6 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_05165 d75d592a747fb59a51fc22083f4c4f23 423 Pfam PF00890 FAD binding domain 4 403 4.2E-63 T 15-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_05165 d75d592a747fb59a51fc22083f4c4f23 423 Gene3D G3DSA:3.50.50.60 245 419 3.1E-6 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_05165 d75d592a747fb59a51fc22083f4c4f23 423 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 3 415 3.1E-177 T 15-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 NJ56_05165 d75d592a747fb59a51fc22083f4c4f23 423 SUPERFAMILY SSF51905 1 418 3.9E-28 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_05165 d75d592a747fb59a51fc22083f4c4f23 423 Hamap MF_00753 Anaerobic glycerol-3-phosphate dehydrogenase subunit B [glpB]. 1 419 49.474 T 15-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 Pfam PF03453 MoeA N-terminal region (domain I and II) 10 170 2.1E-44 T 15-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 Gene3D G3DSA:2.170.190.11 53 144 2.2E-146 T 15-10-2018 NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 Pfam PF03454 MoeA C-terminal region (domain IV) 335 406 7.2E-20 T 15-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 SUPERFAMILY SSF63867 330 410 1.31E-24 T 15-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 180 316 6.0E-35 T 15-10-2018 IPR001453 MoaB/Mog domain NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 SMART SM00852 183 320 3.1E-43 T 15-10-2018 IPR001453 MoaB/Mog domain NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 Gene3D G3DSA:2.40.340.10 331 401 2.2E-146 T 15-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 SUPERFAMILY SSF53218 180 326 6.54E-44 T 15-10-2018 IPR036425 MoaB/Mog-like domain superfamily NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 Pfam PF00994 Probable molybdopterin binding domain 183 319 6.5E-27 T 15-10-2018 IPR001453 MoaB/Mog domain NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 256 289 - T 15-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 Gene3D G3DSA:3.90.105.10 29 177 2.2E-146 T 15-10-2018 NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 Gene3D G3DSA:3.40.980.10 28 330 2.2E-146 T 15-10-2018 IPR036425 MoaB/Mog-like domain superfamily NJ56_17420 095a9227fccf5fcd041572dbbad61be7 412 SUPERFAMILY SSF63882 7 178 2.62E-55 T 15-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 NJ56_10990 328c07f398174976cba67f59b5f6c504 199 PIRSF PIRSF000013 1 199 2.4E-107 T 15-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 NJ56_10990 328c07f398174976cba67f59b5f6c504 199 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 10 193 2.0E-104 T 15-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 NJ56_10990 328c07f398174976cba67f59b5f6c504 199 Gene3D G3DSA:1.10.3820.10 18 195 1.2E-39 T 15-10-2018 IPR038266 NapC/NirT cytochrome c superfamily NJ56_10990 328c07f398174976cba67f59b5f6c504 199 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 21 192 9.2E-79 T 15-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal NJ56_10990 328c07f398174976cba67f59b5f6c504 199 SUPERFAMILY SSF48695 16 193 1.04E-64 T 15-10-2018 IPR036280 Multiheme cytochrome superfamily NJ56_05910 ec1dae8869ad5fd6a2fbc96981db4331 222 TIGRFAM TIGR00608 radc: DNA repair protein RadC 10 222 1.4E-81 T 15-10-2018 IPR001405 Uncharacterised protein family UPF0758 NJ56_05910 ec1dae8869ad5fd6a2fbc96981db4331 222 Gene3D G3DSA:3.40.140.10 98 222 3.7E-44 T 15-10-2018 NJ56_05910 ec1dae8869ad5fd6a2fbc96981db4331 222 SUPERFAMILY SSF47781 16 84 1.25E-9 T 15-10-2018 IPR010994 RuvA domain 2-like NJ56_05910 ec1dae8869ad5fd6a2fbc96981db4331 222 Hamap MF_00018 UPF0758 protein YicR [yicR]. 2 222 52.353 T 15-10-2018 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily NJ56_05910 ec1dae8869ad5fd6a2fbc96981db4331 222 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 171 176 - T 15-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site NJ56_05910 ec1dae8869ad5fd6a2fbc96981db4331 222 Pfam PF04002 RadC-like JAB domain 103 220 5.4E-44 T 15-10-2018 IPR025657 RadC-like JAB domain NJ56_12155 f54ae80950d6fe0bfb43c53b00d939b8 352 Pfam PF04865 Baseplate J-like protein 69 317 3.6E-62 T 15-10-2018 IPR006949 Baseplate protein J-like NJ56_08200 2e31fad40635bc0b5829377a89938207 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 4.6E-103 T 15-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria NJ56_08200 2e31fad40635bc0b5829377a89938207 260 Pfam PF02405 Permease MlaE 45 256 1.7E-75 T 15-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 NJ56_12230 081946368f88e7d49758874ff8b7863e 531 Pfam PF00005 ABC transporter 305 455 1.8E-30 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_12230 081946368f88e7d49758874ff8b7863e 531 SUPERFAMILY SSF52540 7 258 6.66E-64 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_12230 081946368f88e7d49758874ff8b7863e 531 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_12230 081946368f88e7d49758874ff8b7863e 531 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 265 1.1E-4 T 15-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 NJ56_12230 081946368f88e7d49758874ff8b7863e 531 SMART SM00382 36 236 1.2E-14 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_12230 081946368f88e7d49758874ff8b7863e 531 SMART SM00382 313 503 1.1E-15 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_12230 081946368f88e7d49758874ff8b7863e 531 SUPERFAMILY SSF52540 277 526 3.51E-66 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_12230 081946368f88e7d49758874ff8b7863e 531 ProSitePatterns PS00211 ABC transporters family signature. 427 441 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_12230 081946368f88e7d49758874ff8b7863e 531 Gene3D G3DSA:3.40.50.300 275 531 2.6E-82 T 15-10-2018 NJ56_12230 081946368f88e7d49758874ff8b7863e 531 Gene3D G3DSA:3.40.50.300 5 270 1.1E-80 T 15-10-2018 NJ56_12230 081946368f88e7d49758874ff8b7863e 531 Pfam PF00005 ABC transporter 28 186 1.9E-26 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_16175 86699afc389d19f5d4d8c4426b816d39 301 Pfam PF03466 LysR substrate binding domain 91 295 7.9E-34 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_16175 86699afc389d19f5d4d8c4426b816d39 301 Gene3D G3DSA:3.40.190.10 166 267 1.2E-49 T 15-10-2018 NJ56_16175 86699afc389d19f5d4d8c4426b816d39 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 9.8E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_16175 86699afc389d19f5d4d8c4426b816d39 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 9.8E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_16175 86699afc389d19f5d4d8c4426b816d39 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 9.8E-5 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_16175 86699afc389d19f5d4d8c4426b816d39 301 SUPERFAMILY SSF46785 6 91 8.62E-20 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_16175 86699afc389d19f5d4d8c4426b816d39 301 Gene3D G3DSA:1.10.10.10 6 91 4.4E-25 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_16175 86699afc389d19f5d4d8c4426b816d39 301 SUPERFAMILY SSF53850 92 298 1.74E-37 T 15-10-2018 NJ56_16175 86699afc389d19f5d4d8c4426b816d39 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 5.6E-16 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_16175 86699afc389d19f5d4d8c4426b816d39 301 Gene3D G3DSA:3.40.190.10 95 291 1.2E-49 T 15-10-2018 NJ56_00030 55a4612b6acd6f3cf4952b5c4c6ed0a8 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 3.3E-6 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_00030 55a4612b6acd6f3cf4952b5c4c6ed0a8 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 3.3E-6 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_00030 55a4612b6acd6f3cf4952b5c4c6ed0a8 230 SUPERFAMILY SSF48498 93 224 1.49E-33 T 15-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NJ56_00030 55a4612b6acd6f3cf4952b5c4c6ed0a8 230 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 2.4E-13 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_00030 55a4612b6acd6f3cf4952b5c4c6ed0a8 230 SUPERFAMILY SSF46689 7 83 4.26E-20 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_00030 55a4612b6acd6f3cf4952b5c4c6ed0a8 230 Gene3D G3DSA:1.10.357.10 66 228 7.8E-47 T 15-10-2018 NJ56_00030 55a4612b6acd6f3cf4952b5c4c6ed0a8 230 Pfam PF09209 Domain of unknown function (DUF1956) 97 223 4.1E-33 T 15-10-2018 IPR015292 Transcription regulator YbiH, C-terminal NJ56_00030 55a4612b6acd6f3cf4952b5c4c6ed0a8 230 Gene3D G3DSA:1.10.10.60 4 65 7.8E-25 T 15-10-2018 NJ56_00030 55a4612b6acd6f3cf4952b5c4c6ed0a8 230 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 61 - T 15-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site NJ56_02090 481398b463bcce912dfc41e671c5dba5 264 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 211 226 5.8E-26 T 15-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial NJ56_02090 481398b463bcce912dfc41e671c5dba5 264 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 131 148 5.8E-26 T 15-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial NJ56_02090 481398b463bcce912dfc41e671c5dba5 264 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 199 210 5.8E-26 T 15-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial NJ56_02090 481398b463bcce912dfc41e671c5dba5 264 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 188 198 5.8E-26 T 15-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial NJ56_02090 481398b463bcce912dfc41e671c5dba5 264 Pfam PF01478 Type IV leader peptidase family 123 230 1.0E-23 T 15-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 NJ56_02090 481398b463bcce912dfc41e671c5dba5 264 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 21 110 5.2E-34 T 15-10-2018 IPR010627 Peptidase A24A, N-terminal NJ56_02090 481398b463bcce912dfc41e671c5dba5 264 Gene3D G3DSA:1.20.120.1220 114 236 2.6E-6 T 15-10-2018 NJ56_10380 f7d491e4698d1fa3238eb0db628cf464 126 SUPERFAMILY SSF56214 3 125 2.09E-30 T 15-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 NJ56_10380 f7d491e4698d1fa3238eb0db628cf464 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 126 1.5E-52 T 15-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 NJ56_10380 f7d491e4698d1fa3238eb0db628cf464 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 9 92 1.0E-38 T 15-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 NJ56_10380 f7d491e4698d1fa3238eb0db628cf464 126 Gene3D G3DSA:3.90.470.20 1 126 2.9E-40 T 15-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 NJ56_10380 f7d491e4698d1fa3238eb0db628cf464 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 4 126 26.251 T 15-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 NJ56_10380 f7d491e4698d1fa3238eb0db628cf464 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 3 126 4.1E-39 T 15-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 NJ56_10380 f7d491e4698d1fa3238eb0db628cf464 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 122 2.7E-25 T 15-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 NJ56_17175 9d428a21d81e2a251d7557a698dd1bca 201 SMART SM00014 59 168 3.4E-21 T 15-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NJ56_17175 9d428a21d81e2a251d7557a698dd1bca 201 SUPERFAMILY SSF48317 1 179 1.7E-32 T 15-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily NJ56_17175 9d428a21d81e2a251d7557a698dd1bca 201 Pfam PF01569 PAP2 superfamily 64 167 2.2E-10 T 15-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NJ56_17175 9d428a21d81e2a251d7557a698dd1bca 201 Gene3D G3DSA:1.20.144.10 93 184 1.5E-15 T 15-10-2018 NJ56_03995 a23905826b90ee4ddf55d869ba02d1c8 106 SUPERFAMILY SSF50249 3 105 3.43E-31 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_03995 a23905826b90ee4ddf55d869ba02d1c8 106 PIRSF PIRSF003135 1 103 8.5E-51 T 15-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 NJ56_03995 a23905826b90ee4ddf55d869ba02d1c8 106 Gene3D G3DSA:2.40.50.140 1 106 5.1E-41 T 15-10-2018 NJ56_03995 a23905826b90ee4ddf55d869ba02d1c8 106 Pfam PF00436 Single-strand binding protein family 5 85 3.0E-12 T 15-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 NJ56_03995 a23905826b90ee4ddf55d869ba02d1c8 106 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 5 101 3.0E-37 T 15-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 NJ56_03995 a23905826b90ee4ddf55d869ba02d1c8 106 Hamap MF_00720 Primosomal replication protein N [priB]. 4 102 24.171 T 15-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 NJ56_14115 6aafb6cd274b382abd8f4e2c7ba88067 415 Pfam PF04403 Paraquat-inducible protein A 250 405 1.0E-45 T 15-10-2018 IPR007498 Intermembrane transport protein PqiA-like NJ56_14115 6aafb6cd274b382abd8f4e2c7ba88067 415 Pfam PF04403 Paraquat-inducible protein A 53 204 2.2E-39 T 15-10-2018 IPR007498 Intermembrane transport protein PqiA-like NJ56_14115 6aafb6cd274b382abd8f4e2c7ba88067 415 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 11 405 1.1E-170 T 15-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type NJ56_03320 ff349121ca92673f0b2125b004aabc25 146 SUPERFAMILY SSF53062 1 129 1.83E-35 T 15-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 NJ56_03320 ff349121ca92673f0b2125b004aabc25 146 Pfam PF03610 PTS system fructose IIA component 3 115 2.7E-27 T 15-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 NJ56_03320 ff349121ca92673f0b2125b004aabc25 146 Gene3D G3DSA:3.40.50.510 1 144 1.1E-36 T 15-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 10 430 41.391 T 15-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 Pfam PF00815 Histidinol dehydrogenase 30 430 3.9E-167 T 15-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 PRINTS PR00083 Histidinol dehydrogenase signature 140 166 1.7E-101 T 15-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 PRINTS PR00083 Histidinol dehydrogenase signature 255 274 1.7E-101 T 15-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 1.7E-101 T 15-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 PRINTS PR00083 Histidinol dehydrogenase signature 323 348 1.7E-101 T 15-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 PRINTS PR00083 Histidinol dehydrogenase signature 39 63 1.7E-101 T 15-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 1.7E-101 T 15-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 PRINTS PR00083 Histidinol dehydrogenase signature 364 382 1.7E-101 T 15-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 PRINTS PR00083 Histidinol dehydrogenase signature 233 254 1.7E-101 T 15-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 SUPERFAMILY SSF53720 11 434 3.73E-86 T 15-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 Gene3D G3DSA:3.40.50.1980 237 352 3.2E-124 T 15-10-2018 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 Gene3D G3DSA:3.40.50.1980 36 235 3.2E-124 T 15-10-2018 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 PIRSF PIRSF000099 3 433 9.4E-170 T 15-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 39 429 6.5E-162 T 15-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_17240 60c4ad64cb7eaa3c5d34f10ed757f20c 441 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 233 265 - T 15-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 NJ56_00395 e6fb2668d4a3fd4167a6cb92b4ec1325 245 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 240 42.575 T 15-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 NJ56_00395 e6fb2668d4a3fd4167a6cb92b4ec1325 245 SUPERFAMILY SSF88713 1 242 2.08E-92 T 15-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NJ56_00395 e6fb2668d4a3fd4167a6cb92b4ec1325 245 Gene3D G3DSA:3.20.20.370 1 245 8.2E-101 T 15-10-2018 NJ56_00395 e6fb2668d4a3fd4167a6cb92b4ec1325 245 Pfam PF03746 LamB/YcsF family 3 232 4.6E-94 T 15-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 NJ56_08890 5e47facbe73a836497b6b106e0e940fe 272 SUPERFAMILY SSF53223 9 105 5.01E-26 T 15-10-2018 NJ56_08890 5e47facbe73a836497b6b106e0e940fe 272 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 26 93 8.2E-16 T 15-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 NJ56_08890 5e47facbe73a836497b6b106e0e940fe 272 Gene3D G3DSA:3.40.50.720 104 272 5.3E-37 T 15-10-2018 NJ56_08890 5e47facbe73a836497b6b106e0e940fe 272 SUPERFAMILY SSF51735 106 267 3.31E-32 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_08890 5e47facbe73a836497b6b106e0e940fe 272 Gene3D G3DSA:3.40.50.10860 4 103 2.6E-32 T 15-10-2018 NJ56_01395 83280acd59ecf860725a3a7e089ed060 106 Pfam PF01722 BolA-like protein 12 85 1.1E-29 T 15-10-2018 IPR002634 BolA protein NJ56_01395 83280acd59ecf860725a3a7e089ed060 106 Gene3D G3DSA:3.30.300.90 2 91 1.3E-35 T 15-10-2018 NJ56_01395 83280acd59ecf860725a3a7e089ed060 106 SUPERFAMILY SSF82657 3 90 2.49E-30 T 15-10-2018 IPR036065 BolA-like superfamily NJ56_01395 83280acd59ecf860725a3a7e089ed060 106 PIRSF PIRSF003113 1 101 3.1E-33 T 15-10-2018 IPR002634 BolA protein NJ56_14180 b9311e4bc58fdc4ef35637fe507fbc3d 287 Gene3D G3DSA:3.30.200.20 1 92 1.9E-19 T 15-10-2018 NJ56_14180 b9311e4bc58fdc4ef35637fe507fbc3d 287 Pfam PF03881 Fructosamine kinase 1 285 7.1E-118 T 15-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 NJ56_14180 b9311e4bc58fdc4ef35637fe507fbc3d 287 SUPERFAMILY SSF56112 3 280 2.51E-41 T 15-10-2018 IPR011009 Protein kinase-like domain superfamily NJ56_14180 b9311e4bc58fdc4ef35637fe507fbc3d 287 Gene3D G3DSA:3.90.1200.10 98 286 2.8E-60 T 15-10-2018 NJ56_14180 b9311e4bc58fdc4ef35637fe507fbc3d 287 PIRSF PIRSF006221 1 287 2.6E-92 T 15-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 NJ56_07360 5013740864b2f00848b0f7d1d514adb1 103 Gene3D G3DSA:3.30.70.600 1 103 7.5E-38 T 15-10-2018 IPR036838 Ribosomal protein S10 domain superfamily NJ56_07360 5013740864b2f00848b0f7d1d514adb1 103 SMART SM01403 7 101 2.6E-56 T 15-10-2018 IPR027486 Ribosomal protein S10 domain NJ56_07360 5013740864b2f00848b0f7d1d514adb1 103 SUPERFAMILY SSF54999 5 101 1.1E-36 T 15-10-2018 IPR036838 Ribosomal protein S10 domain superfamily NJ56_07360 5013740864b2f00848b0f7d1d514adb1 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.0E-18 T 15-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07360 5013740864b2f00848b0f7d1d514adb1 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.0E-18 T 15-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07360 5013740864b2f00848b0f7d1d514adb1 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.0E-18 T 15-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07360 5013740864b2f00848b0f7d1d514adb1 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.274 T 15-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07360 5013740864b2f00848b0f7d1d514adb1 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.7E-46 T 15-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07360 5013740864b2f00848b0f7d1d514adb1 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 1.8E-35 T 15-10-2018 IPR027486 Ribosomal protein S10 domain NJ56_07360 5013740864b2f00848b0f7d1d514adb1 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 15-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_03660 68a6424684f5d895d3e47bb75f85da5d 290 PIRSF PIRSF011468 1 288 1.6E-164 T 15-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 NJ56_03660 68a6424684f5d895d3e47bb75f85da5d 290 Pfam PF06007 Phosphonate metabolism protein PhnJ 7 277 2.1E-145 T 15-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 NJ56_09210 6c2381f101c34d74c841ad617d94b5a4 291 Gene3D G3DSA:3.30.70.100 182 276 4.7E-25 T 15-10-2018 NJ56_09210 6c2381f101c34d74c841ad617d94b5a4 291 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 146 180 - T 15-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 NJ56_09210 6c2381f101c34d74c841ad617d94b5a4 291 SUPERFAMILY SSF82861 31 115 5.75E-16 T 15-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 NJ56_09210 6c2381f101c34d74c841ad617d94b5a4 291 Pfam PF00924 Mechanosensitive ion channel 75 271 1.4E-55 T 15-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 NJ56_09210 6c2381f101c34d74c841ad617d94b5a4 291 Gene3D G3DSA:2.30.30.60 132 180 1.0E-20 T 15-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily NJ56_09210 6c2381f101c34d74c841ad617d94b5a4 291 SUPERFAMILY SSF50182 117 182 2.91E-17 T 15-10-2018 IPR010920 LSM domain superfamily NJ56_09210 6c2381f101c34d74c841ad617d94b5a4 291 SUPERFAMILY SSF82689 184 282 1.23E-30 T 15-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 NJ56_09210 6c2381f101c34d74c841ad617d94b5a4 291 Pfam PF05552 Conserved TM helix 19 67 6.5E-14 T 15-10-2018 IPR008910 Conserved TM helix NJ56_09315 f5c1d86ca7a2b366cc33d830b91bc2ca 172 TIGRFAM TIGR01752 flav_long: flavodoxin 2 168 2.5E-70 T 15-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 NJ56_09315 f5c1d86ca7a2b366cc33d830b91bc2ca 172 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 15-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 NJ56_09315 f5c1d86ca7a2b366cc33d830b91bc2ca 172 SUPERFAMILY SSF52218 1 166 1.39E-45 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_09315 f5c1d86ca7a2b366cc33d830b91bc2ca 172 Pfam PF00258 Flavodoxin 5 160 1.0E-24 T 15-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 NJ56_09315 f5c1d86ca7a2b366cc33d830b91bc2ca 172 PIRSF PIRSF038996 1 170 1.1E-53 T 15-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 NJ56_09315 f5c1d86ca7a2b366cc33d830b91bc2ca 172 Gene3D G3DSA:3.40.50.360 1 171 2.1E-47 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_16945 1c592a552508cd18ac1adacdd080627d 588 Gene3D G3DSA:1.10.490.140 181 395 3.0E-13 T 15-10-2018 NJ56_16945 1c592a552508cd18ac1adacdd080627d 588 Gene3D G3DSA:3.30.160.660 217 341 3.0E-13 T 15-10-2018 NJ56_16945 1c592a552508cd18ac1adacdd080627d 588 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 11 404 9.3E-159 T 15-10-2018 IPR003776 YcaO-like domain NJ56_16945 1c592a552508cd18ac1adacdd080627d 588 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 59 391 1.0E-78 T 15-10-2018 IPR003776 YcaO-like domain NJ56_00875 b0aaea8abd85ae2cd4a0499265c75614 141 Pfam PF03960 ArsC family 7 114 1.9E-18 T 15-10-2018 IPR006660 Arsenate reductase-like NJ56_00875 b0aaea8abd85ae2cd4a0499265c75614 141 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 1.0E-38 T 15-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 NJ56_00875 b0aaea8abd85ae2cd4a0499265c75614 141 Gene3D G3DSA:3.40.30.10 1 141 2.4E-59 T 15-10-2018 NJ56_00875 b0aaea8abd85ae2cd4a0499265c75614 141 SUPERFAMILY SSF52833 3 137 3.73E-37 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 SUPERFAMILY SSF52540 365 812 2.02E-103 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 Gene3D G3DSA:3.40.50.300 334 809 1.7E-203 T 15-10-2018 NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1123 21.174 T 15-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 PIRSF PIRSF000980 1 1123 0.0 T 15-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 Gene3D G3DSA:1.10.10.990 865 935 2.0E-26 T 15-10-2018 NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1088 0.0 T 15-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 Gene3D G3DSA:1.10.486.10 456 664 1.7E-203 T 15-10-2018 NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 807 1.5E-302 T 15-10-2018 NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 Gene3D G3DSA:1.10.10.160 79 187 2.8E-130 T 15-10-2018 IPR013986 DExx box DNA helicase domain superfamily NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 Gene3D G3DSA:3.40.50.10930 4 315 2.8E-130 T 15-10-2018 NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 SUPERFAMILY SSF52540 1 347 6.37E-128 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09545 0eb18970bdb3ddbbde6c64c6019de7dd 1123 SUPERFAMILY SSF52980 819 1121 4.99E-92 T 15-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 NJ56_12515 14fc29d64329ab989d244383ac45c79c 296 Pfam PF03524 Conjugal transfer protein 30 273 2.3E-48 T 15-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX NJ56_12515 14fc29d64329ab989d244383ac45c79c 296 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 6 276 3.1E-68 T 15-10-2018 IPR014148 P-type conjugative transfer protein VirB9 NJ56_12515 14fc29d64329ab989d244383ac45c79c 296 Gene3D G3DSA:2.60.40.2500 169 295 3.8E-23 T 15-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily NJ56_09510 30140f08d79c3f4362069c2247b8a590 289 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 284 20.363 T 15-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 NJ56_09510 30140f08d79c3f4362069c2247b8a590 289 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 285 1.3E-103 T 15-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 NJ56_09510 30140f08d79c3f4362069c2247b8a590 289 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 15-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 NJ56_09510 30140f08d79c3f4362069c2247b8a590 289 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 279 2.7E-79 T 15-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 NJ56_09915 a53a9476a66942296acf9369bafb4054 390 TIGRFAM TIGR00998 8a0101: efflux pump membrane protein 20 345 7.8E-137 T 15-10-2018 IPR005694 Efflux pump membrane protein Emr GO:0006855|GO:0015238 NJ56_09915 a53a9476a66942296acf9369bafb4054 390 SUPERFAMILY SSF111369 57 113 2.75E-6 T 15-10-2018 NJ56_09915 a53a9476a66942296acf9369bafb4054 390 Gene3D G3DSA:2.40.50.100 60 94 5.7E-14 T 15-10-2018 NJ56_09915 a53a9476a66942296acf9369bafb4054 390 Gene3D G3DSA:2.40.30.170 232 352 1.2E-34 T 15-10-2018 NJ56_09915 a53a9476a66942296acf9369bafb4054 390 SUPERFAMILY SSF111369 168 269 5.36E-10 T 15-10-2018 NJ56_09915 a53a9476a66942296acf9369bafb4054 390 Gene3D G3DSA:1.10.287.470 95 186 5.7E-14 T 15-10-2018 NJ56_09915 a53a9476a66942296acf9369bafb4054 390 SUPERFAMILY SSF111369 119 179 7.45E-5 T 15-10-2018 NJ56_09915 a53a9476a66942296acf9369bafb4054 390 Pfam PF00529 HlyD membrane-fusion protein of T1SS 36 347 2.5E-15 T 15-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 NJ56_09915 a53a9476a66942296acf9369bafb4054 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 289 1.2E-12 T 15-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NJ56_03455 b0bf252b45e883c815657cda87ecfe05 155 Pfam PF01420 Type I restriction modification DNA specificity domain 26 149 3.2E-13 T 15-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 NJ56_03455 b0bf252b45e883c815657cda87ecfe05 155 Gene3D G3DSA:3.90.220.20 2 155 2.0E-22 T 15-10-2018 NJ56_03455 b0bf252b45e883c815657cda87ecfe05 155 SUPERFAMILY SSF116734 13 155 2.45E-23 T 15-10-2018 NJ56_13960 6d363ccbb70c68da7f951ca7177e71fe 454 Pfam PF03313 Serine dehydratase alpha chain 184 448 1.9E-95 T 15-10-2018 IPR005130 Serine dehydratase-like, alpha subunit NJ56_13960 6d363ccbb70c68da7f951ca7177e71fe 454 Pfam PF03315 Serine dehydratase beta chain 3 155 4.7E-56 T 15-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 NJ56_13960 6d363ccbb70c68da7f951ca7177e71fe 454 SUPERFAMILY SSF143548 16 158 1.2E-45 T 15-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 NJ56_13960 6d363ccbb70c68da7f951ca7177e71fe 454 Gene3D G3DSA:3.30.1330.90 10 159 8.5E-52 T 15-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 NJ56_13960 6d363ccbb70c68da7f951ca7177e71fe 454 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 1.5E-224 T 15-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 NJ56_11285 5b34e6757fd9a1c9c092ea92beb89da7 415 SUPERFAMILY SSF51197 3 413 1.24E-147 T 15-10-2018 NJ56_11285 5b34e6757fd9a1c9c092ea92beb89da7 415 Gene3D G3DSA:2.60.120.330 1 415 2.8E-162 T 15-10-2018 IPR027443 Isopenicillin N synthase-like NJ56_11285 5b34e6757fd9a1c9c092ea92beb89da7 415 Pfam PF07350 Protein of unknown function (DUF1479) 8 412 3.1E-141 T 15-10-2018 IPR010856 Protein of unknown function DUF1479 NJ56_06970 842ceff8be3b23476412addf196ac800 228 SUPERFAMILY SSF53271 49 226 1.05E-31 T 15-10-2018 IPR029057 Phosphoribosyltransferase-like NJ56_06970 842ceff8be3b23476412addf196ac800 228 Pfam PF00156 Phosphoribosyl transferase domain 166 225 9.9E-7 T 15-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 NJ56_06970 842ceff8be3b23476412addf196ac800 228 Gene3D G3DSA:3.40.50.2020 103 227 6.6E-16 T 15-10-2018 NJ56_03835 37e12091e3ac99cea81187aee429c415 97 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 6.0E-23 T 15-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 NJ56_03835 37e12091e3ac99cea81187aee429c415 97 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 97 1.0E-42 T 15-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 NJ56_03835 37e12091e3ac99cea81187aee429c415 97 SMART SM01103 3 86 2.6E-41 T 15-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 NJ56_03835 37e12091e3ac99cea81187aee429c415 97 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 94 5.7E-39 T 15-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 NJ56_03835 37e12091e3ac99cea81187aee429c415 97 SUPERFAMILY SSF75471 1 96 2.88E-31 T 15-10-2018 IPR035920 YhbY-like superfamily NJ56_03835 37e12091e3ac99cea81187aee429c415 97 Gene3D G3DSA:3.30.110.60 1 97 1.9E-37 T 15-10-2018 IPR035920 YhbY-like superfamily NJ56_06295 b6fdd3d1c32a912eb63cb6ca65afe48c 318 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 18 311 4.4E-93 T 15-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 NJ56_06295 b6fdd3d1c32a912eb63cb6ca65afe48c 318 SUPERFAMILY SSF161098 28 304 9.81E-34 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_06295 b6fdd3d1c32a912eb63cb6ca65afe48c 318 Gene3D G3DSA:1.10.3720.10 70 316 2.5E-32 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_06295 b6fdd3d1c32a912eb63cb6ca65afe48c 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 307 3.6E-17 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_08750 b3d7d77b67325867f108058800e5dc92 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 3.8E-15 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_08750 b3d7d77b67325867f108058800e5dc92 303 Gene3D G3DSA:3.40.190.10 93 291 4.3E-58 T 15-10-2018 NJ56_08750 b3d7d77b67325867f108058800e5dc92 303 Gene3D G3DSA:3.40.190.10 164 264 4.3E-58 T 15-10-2018 NJ56_08750 b3d7d77b67325867f108058800e5dc92 303 Pfam PF03466 LysR substrate binding domain 91 292 1.1E-35 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_08750 b3d7d77b67325867f108058800e5dc92 303 Gene3D G3DSA:1.10.10.10 3 88 1.4E-22 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_08750 b3d7d77b67325867f108058800e5dc92 303 SUPERFAMILY SSF53850 91 294 4.89E-38 T 15-10-2018 NJ56_08750 b3d7d77b67325867f108058800e5dc92 303 SUPERFAMILY SSF46785 3 112 1.14E-20 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_12405 19acde170b18aa2df736f6fe4ba8303e 369 Gene3D G3DSA:3.40.50.720 1 325 5.6E-48 T 15-10-2018 NJ56_12405 19acde170b18aa2df736f6fe4ba8303e 369 SUPERFAMILY SSF51735 2 353 7.37E-32 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_12405 19acde170b18aa2df736f6fe4ba8303e 369 Pfam PF07993 Male sterility protein 6 237 7.7E-34 T 15-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 SUPERFAMILY SSF56719 30 521 3.01E-183 T 15-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Gene3D G3DSA:2.120.10.90 535 841 2.1E-132 T 15-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Gene3D G3DSA:3.30.1360.40 236 333 6.0E-236 T 15-10-2018 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Gene3D G3DSA:1.10.268.10 370 493 6.0E-236 T 15-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 SMART SM00434 11 499 1.5E-302 T 15-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 2.4E-152 T 15-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 841 24.764 T 15-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Gene3D G3DSA:3.90.199.10 33 521 6.0E-236 T 15-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 SUPERFAMILY SSF101904 533 852 3.01E-115 T 15-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 840 0.0 T 15-10-2018 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 793 839 3.7E-13 T 15-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 743 789 8.0E-15 T 15-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 637 5.8E-11 T 15-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 1.4E-8 T 15-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 584 2.4E-10 T 15-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NJ56_11840 f04ce14d51140fd1ca6c01625a8bc62c 889 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 693 737 4.6E-15 T 15-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NJ56_08385 5c100636dc1e29c70251fb935660de88 226 Pfam PF09335 SNARE associated Golgi protein 48 172 1.5E-20 T 15-10-2018 IPR032816 SNARE associated Golgi protein NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 11 295 4.9E-107 T 15-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 162 295 2.3E-19 T 15-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 Pfam PF10135 Rod binding protein 49 95 1.1E-16 T 15-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 Gene3D G3DSA:1.10.530.10 152 291 2.3E-45 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 Gene3D G3DSA:2.10.70.40 186 238 2.3E-45 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 SMART SM00047 140 306 1.7E-42 T 15-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 27 50 2.2E-99 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 52 72 2.2E-99 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 110 135 2.2E-99 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 295 312 2.2E-99 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 5 25 2.2E-99 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 191 212 2.2E-99 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 277 295 2.2E-99 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 235 256 2.2E-99 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 213 234 2.2E-99 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 147 170 2.2E-99 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 257 276 2.2E-99 T 15-10-2018 NJ56_12975 cebafd25f1fe731be0d0dac1207d07a4 313 PRINTS PR01002 Flagellar protein FlgJ signature 171 189 2.2E-99 T 15-10-2018 NJ56_06495 eedc9c51f3d6bdd84e83889feaced2bb 787 Pfam PF00577 Outer membrane usher protein 207 682 4.4E-36 T 15-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 NJ56_06495 eedc9c51f3d6bdd84e83889feaced2bb 787 Pfam PF13953 PapC C-terminal domain 705 760 2.2E-10 T 15-10-2018 IPR025949 PapC-like, C-terminal domain NJ56_06495 eedc9c51f3d6bdd84e83889feaced2bb 787 Gene3D G3DSA:2.60.40.3110 228 317 3.8E-8 T 15-10-2018 NJ56_06495 eedc9c51f3d6bdd84e83889feaced2bb 787 Gene3D G3DSA:2.60.40.2610 608 698 4.3E-11 T 15-10-2018 NJ56_03135 4fe8b8d8b90e0f864b777a2e59ec4854 407 Gene3D G3DSA:3.30.70.1250 115 238 9.5E-154 T 15-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 NJ56_03135 4fe8b8d8b90e0f864b777a2e59ec4854 407 SUPERFAMILY SSF53649 1 407 1.19E-72 T 15-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 NJ56_03135 4fe8b8d8b90e0f864b777a2e59ec4854 407 PIRSF PIRSF001491 1 407 1.6E-163 T 15-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 NJ56_03135 4fe8b8d8b90e0f864b777a2e59ec4854 407 Pfam PF01676 Metalloenzyme superfamily 2 398 9.1E-43 T 15-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 NJ56_03135 4fe8b8d8b90e0f864b777a2e59ec4854 407 Hamap MF_00740 Phosphopentomutase [deoB]. 1 407 55.389 T 15-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 NJ56_03135 4fe8b8d8b90e0f864b777a2e59ec4854 407 SUPERFAMILY SSF143856 117 235 4.18E-50 T 15-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 NJ56_03135 4fe8b8d8b90e0f864b777a2e59ec4854 407 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 404 6.1E-192 T 15-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 NJ56_03135 4fe8b8d8b90e0f864b777a2e59ec4854 407 Gene3D G3DSA:3.40.720.10 3 405 9.5E-154 T 15-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 NJ56_12830 5aeddac2cc4155407cd2e6ad184cd2f0 213 Gene3D G3DSA:1.10.287.500 35 168 5.4E-52 T 15-10-2018 NJ56_12830 5aeddac2cc4155407cd2e6ad184cd2f0 213 PIRSF PIRSF002884 1 213 9.1E-87 T 15-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 NJ56_12830 5aeddac2cc4155407cd2e6ad184cd2f0 213 Gene3D G3DSA:1.20.5.590 6 34 4.5E-11 T 15-10-2018 NJ56_12830 5aeddac2cc4155407cd2e6ad184cd2f0 213 SUPERFAMILY SSF75708 13 212 5.49E-66 T 15-10-2018 NJ56_12830 5aeddac2cc4155407cd2e6ad184cd2f0 213 Pfam PF04344 Chemotaxis phosphatase, CheZ 16 213 1.5E-76 T 15-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 NJ56_02430 a19f15abf44f402e028039f16b00f2a4 233 SUPERFAMILY SSF53167 1 229 7.33E-73 T 15-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 NJ56_02430 a19f15abf44f402e028039f16b00f2a4 233 Pfam PF01048 Phosphorylase superfamily 2 226 6.3E-49 T 15-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 NJ56_02430 a19f15abf44f402e028039f16b00f2a4 233 Gene3D G3DSA:3.40.50.1580 1 232 6.7E-67 T 15-10-2018 NJ56_02430 a19f15abf44f402e028039f16b00f2a4 233 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 229 46.688 T 15-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_02430 a19f15abf44f402e028039f16b00f2a4 233 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 228 1.2E-113 T 15-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 NJ56_10450 e05de65659f0b9fefcff8562e865f94f 540 Gene3D G3DSA:3.40.50.620 261 539 1.0E-112 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_10450 e05de65659f0b9fefcff8562e865f94f 540 Gene3D G3DSA:3.60.110.10 1 254 5.3E-89 T 15-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily NJ56_10450 e05de65659f0b9fefcff8562e865f94f 540 SUPERFAMILY SSF56317 4 242 1.7E-63 T 15-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily NJ56_10450 e05de65659f0b9fefcff8562e865f94f 540 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 37 52 - T 15-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 NJ56_10450 e05de65659f0b9fefcff8562e865f94f 540 Pfam PF00795 Carbon-nitrogen hydrolase 7 243 4.0E-27 T 15-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 NJ56_10450 e05de65659f0b9fefcff8562e865f94f 540 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 5 537 28.47 T 15-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 NJ56_10450 e05de65659f0b9fefcff8562e865f94f 540 TIGRFAM TIGR00552 nadE: NAD+ synthetase 263 511 1.3E-58 T 15-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 NJ56_10450 e05de65659f0b9fefcff8562e865f94f 540 PIRSF PIRSF006630 2 539 1.6E-200 T 15-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 NJ56_10450 e05de65659f0b9fefcff8562e865f94f 540 SUPERFAMILY SSF52402 258 520 6.52E-79 T 15-10-2018 NJ56_10450 e05de65659f0b9fefcff8562e865f94f 540 Pfam PF02540 NAD synthase 264 511 4.1E-71 T 15-10-2018 IPR022310 NAD/GMP synthase NJ56_02105 9a2949ce881d44dc2b39b778a6c306af 460 Pfam PF03929 PepSY-associated TM region 18 388 2.4E-60 T 15-10-2018 IPR005625 PepSY-associated TM protein NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 244 259 1.2E-68 T 15-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 385 405 1.2E-68 T 15-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 534 554 1.2E-68 T 15-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 132 145 1.2E-68 T 15-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 185 201 1.2E-68 T 15-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 708 734 1.2E-68 T 15-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 576 605 1.2E-68 T 15-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 536 548 - T 15-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 Pfam PF00311 Phosphoenolpyruvate carboxylase 128 878 6.7E-289 T 15-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 SUPERFAMILY SSF51621 6 878 0.0 T 15-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 Gene3D G3DSA:1.20.1440.90 303 388 2.4E-22 T 15-10-2018 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 878 18.252 T 15-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 NJ56_05640 1201620d625a7ac88c0fbee7614d327a 878 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 133 144 - T 15-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 NJ56_16835 5e4b92de0720775790e925fea21b716e 182 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 182 9.3E-61 T 15-10-2018 IPR010275 Protein of unknown function DUF882 NJ56_16835 5e4b92de0720775790e925fea21b716e 182 Gene3D G3DSA:3.30.1380.10 61 182 2.1E-10 T 15-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 NJ56_16835 5e4b92de0720775790e925fea21b716e 182 SUPERFAMILY SSF55166 68 182 7.59E-31 T 15-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 NJ56_15800 824bf5a11c662f935ede420b6c93e613 289 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 1.8E-30 T 15-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 NJ56_15800 824bf5a11c662f935ede420b6c93e613 289 Pfam PF01380 SIS domain 124 252 7.6E-24 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_15800 824bf5a11c662f935ede420b6c93e613 289 Gene3D G3DSA:1.10.10.10 1 79 1.4E-27 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_15800 824bf5a11c662f935ede420b6c93e613 289 Gene3D G3DSA:3.40.50.10490 94 277 9.9E-43 T 15-10-2018 NJ56_15800 824bf5a11c662f935ede420b6c93e613 289 SUPERFAMILY SSF53697 94 277 1.51E-42 T 15-10-2018 NJ56_15800 824bf5a11c662f935ede420b6c93e613 289 SUPERFAMILY SSF46689 1 80 1.97E-21 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_10695 a026439a5b5f282fcdca9ee5339983a2 266 Gene3D G3DSA:3.40.1190.20 1 266 2.1E-100 T 15-10-2018 IPR029056 Ribokinase-like NJ56_10695 a026439a5b5f282fcdca9ee5339983a2 266 SUPERFAMILY SSF53613 5 266 7.79E-80 T 15-10-2018 IPR029056 Ribokinase-like NJ56_10695 a026439a5b5f282fcdca9ee5339983a2 266 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 1.5E-93 T 15-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 NJ56_10695 a026439a5b5f282fcdca9ee5339983a2 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 262 1.1E-100 T 15-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 NJ56_12935 c97e64872805aa633c5b5f7d9451a322 137 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 15-10-2018 IPR019776 Flagellar basal body rod protein, conserved site NJ56_12935 c97e64872805aa633c5b5f7d9451a322 137 PIRSF PIRSF002889 1 137 5.6E-41 T 15-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 NJ56_12935 c97e64872805aa633c5b5f7d9451a322 137 Pfam PF00460 Flagella basal body rod protein 9 39 5.8E-12 T 15-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 NJ56_12935 c97e64872805aa633c5b5f7d9451a322 137 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 135 2.0E-42 T 15-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 NJ56_13860 c7956e86787aee0c605542f6b13b9304 246 Gene3D G3DSA:3.60.140.10 29 210 2.0E-48 T 15-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily NJ56_13860 c7956e86787aee0c605542f6b13b9304 246 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 40 192 3.8E-42 T 15-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase NJ56_13860 c7956e86787aee0c605542f6b13b9304 246 SUPERFAMILY SSF64438 34 192 3.11E-46 T 15-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic NJ56_13860 c7956e86787aee0c605542f6b13b9304 246 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 39 194 7.2E-43 T 15-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase NJ56_15510 05799fc1730e9bf24a56ebfd897fca87 337 SUPERFAMILY SSF52172 6 130 3.56E-32 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_15510 05799fc1730e9bf24a56ebfd897fca87 337 Gene3D G3DSA:3.60.40.10 138 319 4.4E-10 T 15-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 NJ56_15510 05799fc1730e9bf24a56ebfd897fca87 337 Hamap MF_00958 Regulator of RpoS [rssB]. 1 337 55.074 T 15-10-2018 IPR028616 Regulator of RpoS NJ56_15510 05799fc1730e9bf24a56ebfd897fca87 337 Gene3D G3DSA:3.40.50.2300 2 130 1.4E-32 T 15-10-2018 NJ56_15510 05799fc1730e9bf24a56ebfd897fca87 337 SMART SM00448 8 120 6.7E-30 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_15510 05799fc1730e9bf24a56ebfd897fca87 337 Pfam PF00072 Response regulator receiver domain 10 119 2.0E-26 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_01650 2d223fdcf4ddf0c1c055a4523e691698 708 SUPERFAMILY SSF56935 52 708 6.7E-125 T 15-10-2018 NJ56_01650 2d223fdcf4ddf0c1c055a4523e691698 708 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 163 1.3E-17 T 15-10-2018 IPR012910 TonB-dependent receptor, plug domain NJ56_01650 2d223fdcf4ddf0c1c055a4523e691698 708 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 67 708 6.6E-100 T 15-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 NJ56_01650 2d223fdcf4ddf0c1c055a4523e691698 708 Pfam PF00593 TonB dependent receptor 236 706 7.7E-61 T 15-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel NJ56_01650 2d223fdcf4ddf0c1c055a4523e691698 708 Gene3D G3DSA:2.40.170.20 175 708 2.1E-122 T 15-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NJ56_01650 2d223fdcf4ddf0c1c055a4523e691698 708 Gene3D G3DSA:2.170.130.10 43 173 1.9E-33 T 15-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily NJ56_02455 e532c36da780675c706169363739fd40 426 Gene3D G3DSA:3.40.640.10 69 317 1.5E-179 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_02455 e532c36da780675c706169363739fd40 426 Gene3D G3DSA:3.90.1150.10 7 419 1.5E-179 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_02455 e532c36da780675c706169363739fd40 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_02455 e532c36da780675c706169363739fd40 426 SUPERFAMILY SSF53383 2 425 2.42E-135 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_02455 e532c36da780675c706169363739fd40 426 Pfam PF00202 Aminotransferase class-III 32 396 1.1E-77 T 15-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NJ56_02455 e532c36da780675c706169363739fd40 426 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 425 4.0E-201 T 15-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 NJ56_02455 e532c36da780675c706169363739fd40 426 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 106.433 T 15-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 NJ56_01030 908ff91fb89297847fcd048aa42441fd 214 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 34 191 3.1E-22 T 15-10-2018 IPR013830 SGNH hydrolase-type esterase domain NJ56_01030 908ff91fb89297847fcd048aa42441fd 214 Gene3D G3DSA:3.40.50.1110 28 214 1.2E-69 T 15-10-2018 IPR036514 SGNH hydrolase superfamily NJ56_01030 908ff91fb89297847fcd048aa42441fd 214 SUPERFAMILY SSF52266 29 206 4.79E-50 T 15-10-2018 NJ56_01030 908ff91fb89297847fcd048aa42441fd 214 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 31 41 - T 15-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 NJ56_00785 bce21d182b7d8c1395fc059e0eeec12c 446 Gene3D G3DSA:1.50.10.140 31 214 1.0E-7 T 15-10-2018 NJ56_00785 bce21d182b7d8c1395fc059e0eeec12c 446 Pfam PF11329 Protein of unknown function (DUF3131) 42 406 3.3E-115 T 15-10-2018 IPR021478 Protein of unknown function DUF3131 NJ56_10675 35340d582389155ea61d0f29c982aba4 171 Pfam PF13240 zinc-ribbon domain 2 23 1.1E-6 T 15-10-2018 IPR026870 Zinc-ribbon domain Reactome: R-HSA-202670 NJ56_16355 24c5d93ef895e693a771df9d95c4be33 247 Gene3D G3DSA:3.30.450.80 2 176 6.8E-51 T 15-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily NJ56_16355 24c5d93ef895e693a771df9d95c4be33 247 SUPERFAMILY SSF46894 180 242 6.12E-16 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_16355 24c5d93ef895e693a771df9d95c4be33 247 SMART SM00421 179 236 2.1E-19 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_16355 24c5d93ef895e693a771df9d95c4be33 247 Pfam PF03472 Autoinducer binding domain 13 157 1.1E-29 T 15-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain NJ56_16355 24c5d93ef895e693a771df9d95c4be33 247 SUPERFAMILY SSF75516 13 163 3.79E-37 T 15-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily NJ56_16355 24c5d93ef895e693a771df9d95c4be33 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 212 224 4.9E-10 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_16355 24c5d93ef895e693a771df9d95c4be33 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 196 4.9E-10 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_16355 24c5d93ef895e693a771df9d95c4be33 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 212 4.9E-10 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_16355 24c5d93ef895e693a771df9d95c4be33 247 Gene3D G3DSA:1.10.10.10 177 243 1.7E-21 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_16355 24c5d93ef895e693a771df9d95c4be33 247 Pfam PF00196 Bacterial regulatory proteins, luxR family 181 235 9.7E-15 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_01570 4ebc291dd31812545a07241db11bf2f6 609 Pfam PF00128 Alpha amylase, catalytic domain 174 490 5.6E-75 T 15-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NJ56_01570 4ebc291dd31812545a07241db11bf2f6 609 Pfam PF02903 Alpha amylase, N-terminal ig-like domain 5 101 1.3E-7 T 15-10-2018 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain GO:0004553|GO:0005975 NJ56_01570 4ebc291dd31812545a07241db11bf2f6 609 SMART SM00642 124 518 3.4E-79 T 15-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NJ56_01570 4ebc291dd31812545a07241db11bf2f6 609 Gene3D G3DSA:3.20.20.80 112 520 5.1E-127 T 15-10-2018 NJ56_01570 4ebc291dd31812545a07241db11bf2f6 609 Gene3D G3DSA:2.60.40.1180 522 605 5.9E-8 T 15-10-2018 IPR013780 Glycosyl hydrolase, all-beta NJ56_01570 4ebc291dd31812545a07241db11bf2f6 609 SUPERFAMILY SSF51011 527 604 3.53E-7 T 15-10-2018 NJ56_01570 4ebc291dd31812545a07241db11bf2f6 609 PIRSF PIRSF036918 1 606 1.1E-234 T 15-10-2018 IPR017069 Maltodextrin glucosidase GO:0004558|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.20|KEGG: 00500+3.2.1.20|MetaCyc: PWY-842 NJ56_01570 4ebc291dd31812545a07241db11bf2f6 609 SUPERFAMILY SSF51445 113 527 6.34E-93 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_18125 8350040dee7c5b2ab759fbe0aeb7c03b 148 Gene3D G3DSA:1.10.530.10 19 148 1.1E-19 T 15-10-2018 NJ56_18125 8350040dee7c5b2ab759fbe0aeb7c03b 148 Pfam PF01464 Transglycosylase SLT domain 21 136 4.6E-19 T 15-10-2018 IPR008258 Transglycosylase SLT domain 1 NJ56_18125 8350040dee7c5b2ab759fbe0aeb7c03b 148 SUPERFAMILY SSF53955 16 147 1.91E-26 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_12965 c603c4ab276603a0aa8188b3dce40925 238 Pfam PF02107 Flagellar L-ring protein 54 237 6.5E-61 T 15-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NJ56_12965 c603c4ab276603a0aa8188b3dce40925 238 Hamap MF_00415 Flagellar L-ring protein [flgH]. 12 236 27.423 T 15-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NJ56_12965 c603c4ab276603a0aa8188b3dce40925 238 PRINTS PR01008 Flagellar L-ring protein signature 152 167 9.1E-36 T 15-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NJ56_12965 c603c4ab276603a0aa8188b3dce40925 238 PRINTS PR01008 Flagellar L-ring protein signature 215 229 9.1E-36 T 15-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NJ56_12965 c603c4ab276603a0aa8188b3dce40925 238 PRINTS PR01008 Flagellar L-ring protein signature 178 194 9.1E-36 T 15-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NJ56_12965 c603c4ab276603a0aa8188b3dce40925 238 PRINTS PR01008 Flagellar L-ring protein signature 79 91 9.1E-36 T 15-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NJ56_12965 c603c4ab276603a0aa8188b3dce40925 238 PRINTS PR01008 Flagellar L-ring protein signature 199 213 9.1E-36 T 15-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NJ56_02540 c821cb57cbd617f469b14b774a8f0810 178 Gene3D G3DSA:3.40.50.2020 1 176 2.3E-66 T 15-10-2018 NJ56_02540 c821cb57cbd617f469b14b774a8f0810 178 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 173 1.8E-74 T 15-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 NJ56_02540 c821cb57cbd617f469b14b774a8f0810 178 SUPERFAMILY SSF53271 3 174 4.46E-56 T 15-10-2018 IPR029057 Phosphoribosyltransferase-like NJ56_02540 c821cb57cbd617f469b14b774a8f0810 178 Pfam PF00156 Phosphoribosyl transferase domain 12 160 1.0E-24 T 15-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 NJ56_05420 a4c13e5830feae834d844615357d710e 672 Gene3D G3DSA:3.40.50.300 274 632 2.0E-133 T 15-10-2018 NJ56_05420 a4c13e5830feae834d844615357d710e 672 SUPERFAMILY SSF52540 2 639 2.0E-163 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05420 a4c13e5830feae834d844615357d710e 672 Pfam PF13361 UvrD-like helicase C-terminal domain 271 613 2.7E-71 T 15-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 NJ56_05420 a4c13e5830feae834d844615357d710e 672 Gene3D G3DSA:1.10.10.160 108 181 3.1E-102 T 15-10-2018 IPR013986 DExx box DNA helicase domain superfamily NJ56_05420 a4c13e5830feae834d844615357d710e 672 Gene3D G3DSA:3.40.50.300 4 266 3.1E-102 T 15-10-2018 NJ56_05420 a4c13e5830feae834d844615357d710e 672 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 4.2E-77 T 15-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 NJ56_05420 a4c13e5830feae834d844615357d710e 672 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 668 40.942 T 15-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 NJ56_05420 a4c13e5830feae834d844615357d710e 672 Gene3D G3DSA:1.10.486.10 377 544 2.0E-133 T 15-10-2018 NJ56_05420 a4c13e5830feae834d844615357d710e 672 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 666 0.0 T 15-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 NJ56_14555 8eb264ccd8af873b445470cde8876c78 217 Pfam PF00929 Exonuclease 20 194 5.1E-39 T 15-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III NJ56_14555 8eb264ccd8af873b445470cde8876c78 217 Gene3D G3DSA:3.30.420.10 9 214 1.2E-58 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_14555 8eb264ccd8af873b445470cde8876c78 217 Hamap MF_00157 Ribonuclease T [rnt]. 1 217 118.141 T 15-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 NJ56_14555 8eb264ccd8af873b445470cde8876c78 217 SUPERFAMILY SSF53098 9 207 7.59E-58 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_14555 8eb264ccd8af873b445470cde8876c78 217 SMART SM00479 18 203 4.2E-41 T 15-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III NJ56_14555 8eb264ccd8af873b445470cde8876c78 217 TIGRFAM TIGR01298 RNaseT: ribonuclease T 10 208 2.7E-106 T 15-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 NJ56_13560 e61b0adbbcc3055a817387c7545f491a 528 SUPERFAMILY SSF161098 24 254 3.16E-35 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_13560 e61b0adbbcc3055a817387c7545f491a 528 SUPERFAMILY SSF161098 286 519 5.14E-35 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_13560 e61b0adbbcc3055a817387c7545f491a 528 Gene3D G3DSA:1.10.3720.10 27 265 3.7E-38 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_13560 e61b0adbbcc3055a817387c7545f491a 528 Gene3D G3DSA:1.10.3720.10 278 525 1.1E-28 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_13560 e61b0adbbcc3055a817387c7545f491a 528 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 253 3.2E-8 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_13560 e61b0adbbcc3055a817387c7545f491a 528 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 345 524 2.1E-18 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_11780 76ccd03c0454cd4bcdfd95c8b6cddc6d 180 SUPERFAMILY SSF56925 40 180 6.36E-11 T 15-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel NJ56_11780 76ccd03c0454cd4bcdfd95c8b6cddc6d 180 Pfam PF07437 YfaZ precursor 1 180 5.8E-80 T 15-10-2018 IPR009998 YfaZ NJ56_11455 ce3b7fc610478bb85a9bda90d0e776a3 300 SUPERFAMILY SSF51197 95 240 8.79E-18 T 15-10-2018 NJ56_11455 ce3b7fc610478bb85a9bda90d0e776a3 300 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 68 222 4.8E-46 T 15-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 NJ56_11455 ce3b7fc610478bb85a9bda90d0e776a3 300 Gene3D G3DSA:2.60.120.330 43 226 3.8E-41 T 15-10-2018 IPR027443 Isopenicillin N synthase-like NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 173 188 - T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 48 244 1.6E-93 T 15-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 46 65 5.8E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 173 193 5.8E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 194 215 5.8E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 218 243 5.8E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 65 85 5.8E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 85 104 5.8E-68 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 Pfam PF00813 FliP family 48 240 6.9E-78 T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 221 233 - T 15-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 104 116 6.8E-32 T 15-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 116 130 6.8E-32 T 15-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 166 178 6.8E-32 T 15-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 44 53 6.8E-32 T 15-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 144 156 6.8E-32 T 15-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NJ56_13000 1022b509f1b3e5629fbd17d9bf6aff4b 246 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 234 244 6.8E-32 T 15-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NJ56_08925 541d3cd36fc5ea6e94b282b7602589c0 347 Gene3D G3DSA:1.10.3470.10 22 346 4.1E-87 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_08925 541d3cd36fc5ea6e94b282b7602589c0 347 Pfam PF01032 FecCD transport family 36 342 2.9E-81 T 15-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 NJ56_08925 541d3cd36fc5ea6e94b282b7602589c0 347 SUPERFAMILY SSF81345 18 342 1.83E-70 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 Gene3D G3DSA:3.30.930.10 1 214 1.7E-110 T 15-10-2018 NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 SUPERFAMILY SSF55681 8 292 3.62E-134 T 15-10-2018 NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 292 5.3E-150 T 15-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 Gene3D G3DSA:1.20.58.180 215 297 4.9E-34 T 15-10-2018 NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.584 T 15-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 301 6.8E-176 T 15-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 4.1E-71 T 15-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 4.1E-71 T 15-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 4.1E-71 T 15-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 4.1E-71 T 15-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 4.1E-71 T 15-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_06475 084559b52f8b9d69c4a05734616c8ec5 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 4.1E-71 T 15-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NJ56_09280 bdcafaa9dff3c0d933128a480e4ca0c5 128 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 39.702 T 15-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 NJ56_09280 bdcafaa9dff3c0d933128a480e4ca0c5 128 Pfam PF01597 Glycine cleavage H-protein 8 127 6.3E-46 T 15-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate NJ56_09280 bdcafaa9dff3c0d933128a480e4ca0c5 128 Gene3D G3DSA:2.40.50.100 2 128 2.2E-50 T 15-10-2018 NJ56_09280 bdcafaa9dff3c0d933128a480e4ca0c5 128 SUPERFAMILY SSF51230 4 127 3.27E-43 T 15-10-2018 IPR011053 Single hybrid motif NJ56_09280 bdcafaa9dff3c0d933128a480e4ca0c5 128 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 127 7.9E-54 T 15-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 NJ56_09280 bdcafaa9dff3c0d933128a480e4ca0c5 128 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 15-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 NJ56_01515 9a105e3068362c94146364e14bd7c413 156 SUPERFAMILY SSF52121 3 154 1.06E-59 T 15-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_01515 9a105e3068362c94146364e14bd7c413 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 7.7E-59 T 15-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_01515 9a105e3068362c94146364e14bd7c413 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 2.6E-55 T 15-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_01515 9a105e3068362c94146364e14bd7c413 156 Gene3D G3DSA:3.40.50.960 1 156 5.0E-63 T 15-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_01515 9a105e3068362c94146364e14bd7c413 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 31.969 T 15-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 NJ56_15775 52982266185aa0f1c0af134bf4ecf4da 114 Pfam PF01042 Endoribonuclease L-PSP 4 113 1.9E-25 T 15-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 NJ56_15775 52982266185aa0f1c0af134bf4ecf4da 114 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 90 108 - T 15-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 NJ56_15775 52982266185aa0f1c0af134bf4ecf4da 114 SUPERFAMILY SSF55298 2 113 1.73E-26 T 15-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 NJ56_15775 52982266185aa0f1c0af134bf4ecf4da 114 Gene3D G3DSA:3.30.1330.40 1 114 1.2E-33 T 15-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 NJ56_00830 84d3edeed951b343192f605adaf8dfa9 816 PIRSF PIRSF000460 1 816 7.6E-215 T 15-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_00830 84d3edeed951b343192f605adaf8dfa9 816 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 657 669 - T 15-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_00830 84d3edeed951b343192f605adaf8dfa9 816 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 811 0.0 T 15-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_00830 84d3edeed951b343192f605adaf8dfa9 816 SUPERFAMILY SSF53756 12 812 2.04E-288 T 15-10-2018 NJ56_00830 84d3edeed951b343192f605adaf8dfa9 816 Pfam PF00343 Carbohydrate phosphorylase 101 811 4.7E-303 T 15-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 NJ56_00830 84d3edeed951b343192f605adaf8dfa9 816 Gene3D G3DSA:3.40.50.2000 480 805 0.0 T 15-10-2018 NJ56_00830 84d3edeed951b343192f605adaf8dfa9 816 Gene3D G3DSA:3.40.50.2000 23 811 0.0 T 15-10-2018 NJ56_09940 411afbe25746a3189f93c1a3ca0e9446 333 Gene3D G3DSA:3.40.190.10 25 324 1.2E-137 T 15-10-2018 NJ56_09940 411afbe25746a3189f93c1a3ca0e9446 333 SUPERFAMILY SSF53850 24 324 1.0E-91 T 15-10-2018 NJ56_09940 411afbe25746a3189f93c1a3ca0e9446 333 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 36 311 8.2E-53 T 15-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 NJ56_09940 411afbe25746a3189f93c1a3ca0e9446 333 Gene3D G3DSA:3.40.190.100 113 252 1.2E-137 T 15-10-2018 NJ56_02950 9231d08b0826b0aabb52b88124dbf4cd 317 Gene3D G3DSA:3.40.1010.20 6 283 5.2E-112 T 15-10-2018 NJ56_02950 9231d08b0826b0aabb52b88124dbf4cd 317 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 3.1E-100 T 15-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 NJ56_02950 9231d08b0826b0aabb52b88124dbf4cd 317 Gene3D G3DSA:3.40.1010.20 98 197 5.2E-112 T 15-10-2018 NJ56_02950 9231d08b0826b0aabb52b88124dbf4cd 317 Gene3D G3DSA:3.40.50.11270 12 97 5.2E-112 T 15-10-2018 NJ56_02950 9231d08b0826b0aabb52b88124dbf4cd 317 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 36.914 T 15-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 NJ56_02950 9231d08b0826b0aabb52b88124dbf4cd 317 Pfam PF02401 LytB protein 3 283 3.2E-93 T 15-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 NJ56_15985 81de0363a30b20331a0a54bc3554a230 301 SUPERFAMILY SSF51695 31 299 1.23E-43 T 15-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 NJ56_15985 81de0363a30b20331a0a54bc3554a230 301 Gene3D G3DSA:3.20.20.190 25 301 5.9E-39 T 15-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 NJ56_15985 81de0363a30b20331a0a54bc3554a230 301 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 36 293 1.0E-20 T 15-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 NJ56_14855 f2013a3f253756a003d10aa593819132 275 Gene3D G3DSA:2.40.10.10 52 159 9.0E-29 T 15-10-2018 NJ56_14855 f2013a3f253756a003d10aa593819132 275 PRINTS PR00839 V8 serine protease family signature 42 59 1.7E-19 T 15-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 NJ56_14855 f2013a3f253756a003d10aa593819132 275 PRINTS PR00839 V8 serine protease family signature 230 242 1.7E-19 T 15-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 NJ56_14855 f2013a3f253756a003d10aa593819132 275 PRINTS PR00839 V8 serine protease family signature 210 226 1.7E-19 T 15-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 NJ56_14855 f2013a3f253756a003d10aa593819132 275 PRINTS PR00839 V8 serine protease family signature 67 84 1.7E-19 T 15-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 NJ56_14855 f2013a3f253756a003d10aa593819132 275 PRINTS PR00839 V8 serine protease family signature 176 189 1.7E-19 T 15-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 NJ56_14855 f2013a3f253756a003d10aa593819132 275 SMART SM00020 44 265 0.0036 T 15-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 NJ56_14855 f2013a3f253756a003d10aa593819132 275 Pfam PF00089 Trypsin 48 242 2.8E-14 T 15-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 NJ56_14855 f2013a3f253756a003d10aa593819132 275 SUPERFAMILY SSF50494 16 268 9.32E-32 T 15-10-2018 IPR009003 Peptidase S1, PA clan NJ56_14855 f2013a3f253756a003d10aa593819132 275 Gene3D G3DSA:2.40.10.10 37 240 9.0E-29 T 15-10-2018 NJ56_14855 f2013a3f253756a003d10aa593819132 275 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 78 83 - T 15-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 NJ56_14855 f2013a3f253756a003d10aa593819132 275 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 215 226 - T 15-10-2018 IPR033116 Serine proteases, trypsin family, serine active site NJ56_13055 05ece2a640ce5d3c83193c960d262615 572 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 12 571 6.5E-176 T 15-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NJ56_13055 05ece2a640ce5d3c83193c960d262615 572 Gene3D G3DSA:3.30.300.30 125 226 2.3E-10 T 15-10-2018 NJ56_13055 05ece2a640ce5d3c83193c960d262615 572 Pfam PF08345 Flagellar M-ring protein C-terminal 255 450 1.6E-51 T 15-10-2018 IPR013556 Flagellar M-ring C-terminal NJ56_13055 05ece2a640ce5d3c83193c960d262615 572 PIRSF PIRSF004862 6 572 1.4E-165 T 15-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NJ56_13055 05ece2a640ce5d3c83193c960d262615 572 Pfam PF01514 Secretory protein of YscJ/FliF family 34 223 4.3E-74 T 15-10-2018 IPR006182 Secretory protein YscJ/FliF NJ56_13055 05ece2a640ce5d3c83193c960d262615 572 PRINTS PR01009 Flagellar M-ring protein signature 199 217 1.7E-43 T 15-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NJ56_13055 05ece2a640ce5d3c83193c960d262615 572 PRINTS PR01009 Flagellar M-ring protein signature 376 400 1.7E-43 T 15-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NJ56_13055 05ece2a640ce5d3c83193c960d262615 572 PRINTS PR01009 Flagellar M-ring protein signature 268 286 1.7E-43 T 15-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NJ56_13055 05ece2a640ce5d3c83193c960d262615 572 PRINTS PR01009 Flagellar M-ring protein signature 124 142 1.7E-43 T 15-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NJ56_13055 05ece2a640ce5d3c83193c960d262615 572 PRINTS PR01009 Flagellar M-ring protein signature 156 170 1.7E-43 T 15-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NJ56_06045 684a1c82e0f2cc002860f51f1ab26f40 195 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 55 184 4.6E-18 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_06045 684a1c82e0f2cc002860f51f1ab26f40 195 Gene3D G3DSA:3.40.50.1000 4 182 2.8E-63 T 15-10-2018 IPR023214 HAD superfamily NJ56_06045 684a1c82e0f2cc002860f51f1ab26f40 195 SUPERFAMILY SSF56784 3 188 2.6E-42 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_06045 684a1c82e0f2cc002860f51f1ab26f40 195 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 4.1E-6 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_06045 684a1c82e0f2cc002860f51f1ab26f40 195 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 96 109 4.1E-6 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_06045 684a1c82e0f2cc002860f51f1ab26f40 195 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 173 186 4.1E-6 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_06045 684a1c82e0f2cc002860f51f1ab26f40 195 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 4.1E-6 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_06045 684a1c82e0f2cc002860f51f1ab26f40 195 Gene3D G3DSA:1.10.150.240 16 81 2.8E-63 T 15-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 NJ56_06045 684a1c82e0f2cc002860f51f1ab26f40 195 Pfam PF13419 Haloacid dehalogenase-like hydrolase 83 184 4.2E-10 T 15-10-2018 NJ56_09105 7dc6e6786c5051c85b2c1f46e34590e5 273 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 268 2.2E-72 T 15-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 NJ56_09105 7dc6e6786c5051c85b2c1f46e34590e5 273 SUPERFAMILY SSF48179 163 271 3.4E-28 T 15-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 NJ56_09105 7dc6e6786c5051c85b2c1f46e34590e5 273 SUPERFAMILY SSF51735 4 161 1.88E-38 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_09105 7dc6e6786c5051c85b2c1f46e34590e5 273 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 269 1.8E-28 T 15-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 NJ56_09105 7dc6e6786c5051c85b2c1f46e34590e5 273 Gene3D G3DSA:1.10.3730.10 166 273 4.4E-33 T 15-10-2018 NJ56_09105 7dc6e6786c5051c85b2c1f46e34590e5 273 PIRSF PIRSF000193 3 271 1.5E-74 T 15-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 NJ56_09105 7dc6e6786c5051c85b2c1f46e34590e5 273 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 224 247 - T 15-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 NJ56_09105 7dc6e6786c5051c85b2c1f46e34590e5 273 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 269 24.659 T 15-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 NJ56_09105 7dc6e6786c5051c85b2c1f46e34590e5 273 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 100 6.8E-20 T 15-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal NJ56_09105 7dc6e6786c5051c85b2c1f46e34590e5 273 Gene3D G3DSA:3.40.50.720 2 165 4.0E-49 T 15-10-2018 NJ56_08210 de1f366a352dd0152cbd30938d0ce427 208 PIRSF PIRSF004649 1 208 4.8E-58 T 15-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC NJ56_08210 de1f366a352dd0152cbd30938d0ce427 208 Gene3D G3DSA:3.10.450.710 21 200 1.8E-39 T 15-10-2018 NJ56_08210 de1f366a352dd0152cbd30938d0ce427 208 Pfam PF05494 MlaC protein 31 195 7.9E-51 T 15-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC NJ56_08695 09351a45de13c2772132fe9f922375a7 96 Pfam PF04380 Membrane fusogenic activity 1 78 1.1E-27 T 15-10-2018 IPR007475 Membrane fusogenic activity NJ56_04550 71f8d75e68f7797b1233f136fee6c060 173 TIGRFAM TIGR03765 ICE_PFL_4695: integrating conjugative element protein, PFL_4695 family 69 173 3.6E-40 T 15-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 NJ56_04550 71f8d75e68f7797b1233f136fee6c060 173 Pfam PF11072 Protein of unknown function (DUF2859) 31 171 2.2E-49 T 15-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 NJ56_01115 882a350b94305a0d5fc04473a7531999 344 Pfam PF08485 Polysaccharide biosynthesis protein C-terminal 285 332 4.4E-23 T 15-10-2018 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain GO:0003978|GO:0009103 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344 NJ56_01115 882a350b94305a0d5fc04473a7531999 344 Pfam PF02719 Polysaccharide biosynthesis protein 7 282 3.3E-105 T 15-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain NJ56_01115 882a350b94305a0d5fc04473a7531999 344 Gene3D G3DSA:3.90.25.30 166 322 6.9E-135 T 15-10-2018 NJ56_01115 882a350b94305a0d5fc04473a7531999 344 SUPERFAMILY SSF51735 1 260 6.38E-55 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_01115 882a350b94305a0d5fc04473a7531999 344 Gene3D G3DSA:3.40.50.720 4 309 6.9E-135 T 15-10-2018 NJ56_00315 080e7ed8869d579e1f77165ec7f7247e 379 PIRSF PIRSF000267 2 378 1.1E-128 T 15-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 NJ56_00315 080e7ed8869d579e1f77165ec7f7247e 379 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 379 1.2E-187 T 15-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 NJ56_00315 080e7ed8869d579e1f77165ec7f7247e 379 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 362 3.0E-109 T 15-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 NJ56_10140 53c19eada9a088b901d8025083bb3872 187 Pfam PF00419 Fimbrial protein 35 187 4.4E-12 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_10140 53c19eada9a088b901d8025083bb3872 187 Gene3D G3DSA:2.60.40.1090 30 187 7.6E-28 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_10140 53c19eada9a088b901d8025083bb3872 187 SUPERFAMILY SSF49401 33 187 3.68E-24 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_18165 a8ddd042c77671263e12cda2e58fe178 439 Pfam PF03743 Bacterial conjugation TrbI-like protein 195 391 1.0E-28 T 15-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI NJ56_16185 020c4b3807a45b14780347a745e311c3 456 SUPERFAMILY SSF51556 50 374 6.38E-72 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_16185 020c4b3807a45b14780347a745e311c3 456 SUPERFAMILY SSF51338 352 433 3.61E-6 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_16185 020c4b3807a45b14780347a745e311c3 456 Pfam PF01979 Amidohydrolase family 48 429 2.1E-31 T 15-10-2018 IPR006680 Amidohydrolase-related GO:0016787 NJ56_16185 020c4b3807a45b14780347a745e311c3 456 Gene3D G3DSA:2.30.40.10 9 433 5.1E-183 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_16185 020c4b3807a45b14780347a745e311c3 456 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 2 453 1.8E-217 T 15-10-2018 IPR010252 Formiminoglutamate deiminase NJ56_16185 020c4b3807a45b14780347a745e311c3 456 Gene3D G3DSA:3.20.20.140 52 445 5.1E-183 T 15-10-2018 NJ56_01330 0a113b5afc2afc8fee57c58c982ec6c2 346 Gene3D G3DSA:3.40.50.1100 49 155 2.4E-69 T 15-10-2018 NJ56_01330 0a113b5afc2afc8fee57c58c982ec6c2 346 SUPERFAMILY SSF53686 21 333 1.44E-69 T 15-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NJ56_01330 0a113b5afc2afc8fee57c58c982ec6c2 346 Gene3D G3DSA:3.40.50.1100 22 322 2.4E-69 T 15-10-2018 NJ56_01330 0a113b5afc2afc8fee57c58c982ec6c2 346 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 314 5.4E-42 T 15-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme NJ56_09055 c9279b5c207ec341613adaa63496d1ac 90 PIRSF PIRSF029827 1 90 4.1E-44 T 15-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 NJ56_09055 c9279b5c207ec341613adaa63496d1ac 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 9.0E-36 T 15-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 NJ56_09055 c9279b5c207ec341613adaa63496d1ac 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.967 T 15-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 NJ56_09055 c9279b5c207ec341613adaa63496d1ac 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 6.7E-40 T 15-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 NJ56_09055 c9279b5c207ec341613adaa63496d1ac 90 Gene3D G3DSA:1.10.3880.10 1 90 9.3E-38 T 15-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 NJ56_09055 c9279b5c207ec341613adaa63496d1ac 90 SUPERFAMILY SSF111148 1 89 6.54E-40 T 15-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 NJ56_08280 03356af9311476645f320f5c50ead748 472 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 3.2E-38 T 15-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 NJ56_08280 03356af9311476645f320f5c50ead748 472 Gene3D G3DSA:3.50.50.60 245 400 4.9E-42 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_08280 03356af9311476645f320f5c50ead748 472 SUPERFAMILY SSF51971 145 401 2.24E-68 T 15-10-2018 NJ56_08280 03356af9311476645f320f5c50ead748 472 Gene3D G3DSA:1.10.1060.10 13 146 4.7E-35 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_08280 03356af9311476645f320f5c50ead748 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 459 2.6E-25 T 15-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NJ56_08280 03356af9311476645f320f5c50ead748 472 SUPERFAMILY SSF46548 7 157 9.94E-42 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_08280 03356af9311476645f320f5c50ead748 472 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 472 6.8E-261 T 15-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 NJ56_08280 03356af9311476645f320f5c50ead748 472 Gene3D G3DSA:3.50.50.60 147 210 2.8E-10 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_08280 03356af9311476645f320f5c50ead748 472 PRINTS PR00419 Adrenodoxin reductase family signature 324 337 3.7E-37 T 15-10-2018 NJ56_08280 03356af9311476645f320f5c50ead748 472 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 3.7E-37 T 15-10-2018 NJ56_08280 03356af9311476645f320f5c50ead748 472 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 3.7E-37 T 15-10-2018 NJ56_08280 03356af9311476645f320f5c50ead748 472 PRINTS PR00419 Adrenodoxin reductase family signature 290 304 3.7E-37 T 15-10-2018 NJ56_08280 03356af9311476645f320f5c50ead748 472 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 3.7E-37 T 15-10-2018 NJ56_01575 b6e1bdd9a698d84488858159f7b842f3 463 Pfam PF00324 Amino acid permease 17 455 2.0E-110 T 15-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 NJ56_01575 b6e1bdd9a698d84488858159f7b842f3 463 ProSitePatterns PS00218 Amino acid permeases signature. 42 72 - T 15-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 NJ56_01575 b6e1bdd9a698d84488858159f7b842f3 463 PIRSF PIRSF006060 4 459 1.3E-72 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_01575 b6e1bdd9a698d84488858159f7b842f3 463 Gene3D G3DSA:1.20.1740.10 7 461 1.4E-61 T 15-10-2018 NJ56_12320 38a8629c78166316b574062727985f65 140 PRINTS PR00502 NUDIX hydrolase family signature 31 45 2.6E-8 T 15-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 NJ56_12320 38a8629c78166316b574062727985f65 140 PRINTS PR00502 NUDIX hydrolase family signature 45 60 2.6E-8 T 15-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 NJ56_12320 38a8629c78166316b574062727985f65 140 Pfam PF00293 NUDIX domain 5 125 3.7E-24 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_12320 38a8629c78166316b574062727985f65 140 SUPERFAMILY SSF55811 4 131 6.09E-30 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_12320 38a8629c78166316b574062727985f65 140 Gene3D G3DSA:3.90.79.10 1 131 1.4E-36 T 15-10-2018 NJ56_12320 38a8629c78166316b574062727985f65 140 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 15-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NJ56_10370 10c7285245bfc28f717b4e12ad8d4389 243 Pfam PF02565 Recombination protein O C terminal 82 226 3.3E-23 T 15-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 NJ56_10370 10c7285245bfc28f717b4e12ad8d4389 243 Gene3D G3DSA:1.20.1440.120 79 239 7.5E-55 T 15-10-2018 NJ56_10370 10c7285245bfc28f717b4e12ad8d4389 243 Pfam PF11967 Recombination protein O N terminal 4 76 8.7E-24 T 15-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal NJ56_10370 10c7285245bfc28f717b4e12ad8d4389 243 TIGRFAM TIGR00613 reco: DNA repair protein RecO 5 230 5.3E-42 T 15-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 NJ56_10370 10c7285245bfc28f717b4e12ad8d4389 243 SUPERFAMILY SSF57863 85 175 1.88E-9 T 15-10-2018 IPR037278 ARFGAP/RecO-like zinc finger NJ56_10370 10c7285245bfc28f717b4e12ad8d4389 243 SUPERFAMILY SSF50249 4 75 3.77E-15 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_10370 10c7285245bfc28f717b4e12ad8d4389 243 Hamap MF_00201 DNA repair protein RecO [recO]. 1 231 23.292 T 15-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 NJ56_10370 10c7285245bfc28f717b4e12ad8d4389 243 Gene3D G3DSA:2.40.50.140 1 78 5.2E-34 T 15-10-2018 NJ56_12970 a19bfb53c15a23ea2461a2d9305ceb05 369 Pfam PF02119 Flagellar P-ring protein 25 368 2.9E-135 T 15-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NJ56_12970 a19bfb53c15a23ea2461a2d9305ceb05 369 Hamap MF_00416 Flagellar P-ring protein [flgI]. 5 369 38.508 T 15-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NJ56_12970 a19bfb53c15a23ea2461a2d9305ceb05 369 PRINTS PR01010 Flagellar P-ring protein signature 191 209 2.1E-88 T 15-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NJ56_12970 a19bfb53c15a23ea2461a2d9305ceb05 369 PRINTS PR01010 Flagellar P-ring protein signature 108 125 2.1E-88 T 15-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NJ56_12970 a19bfb53c15a23ea2461a2d9305ceb05 369 PRINTS PR01010 Flagellar P-ring protein signature 125 143 2.1E-88 T 15-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NJ56_12970 a19bfb53c15a23ea2461a2d9305ceb05 369 PRINTS PR01010 Flagellar P-ring protein signature 165 183 2.1E-88 T 15-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NJ56_12970 a19bfb53c15a23ea2461a2d9305ceb05 369 PRINTS PR01010 Flagellar P-ring protein signature 40 55 2.1E-88 T 15-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NJ56_12970 a19bfb53c15a23ea2461a2d9305ceb05 369 PRINTS PR01010 Flagellar P-ring protein signature 25 40 2.1E-88 T 15-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NJ56_12970 a19bfb53c15a23ea2461a2d9305ceb05 369 PRINTS PR01010 Flagellar P-ring protein signature 60 75 2.1E-88 T 15-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NJ56_12970 a19bfb53c15a23ea2461a2d9305ceb05 369 PRINTS PR01010 Flagellar P-ring protein signature 86 105 2.1E-88 T 15-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NJ56_12970 a19bfb53c15a23ea2461a2d9305ceb05 369 PRINTS PR01010 Flagellar P-ring protein signature 255 267 2.1E-88 T 15-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NJ56_04860 3dd17a9af5142e31d3efe9a30291fb32 483 Pfam PF02386 Cation transport protein 37 477 5.0E-92 T 15-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 NJ56_04860 3dd17a9af5142e31d3efe9a30291fb32 483 PIRSF PIRSF006247 1 483 2.4E-183 T 15-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 NJ56_04860 3dd17a9af5142e31d3efe9a30291fb32 483 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 466 3.2E-127 T 15-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 NJ56_07780 1978a75f99327fd5ac78c91aa7b9bfaf 135 Hamap MF_01048 Protein PsiE [psiE]. 1 135 25.773 T 15-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 NJ56_07780 1978a75f99327fd5ac78c91aa7b9bfaf 135 PIRSF PIRSF029598 1 135 2.4E-48 T 15-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 NJ56_07780 1978a75f99327fd5ac78c91aa7b9bfaf 135 Pfam PF06146 Phosphate-starvation-inducible E 60 122 3.1E-15 T 15-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like NJ56_04160 7f1aa20edaffe869344a7aa8a20fe0fe 293 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 284 9.1E-92 T 15-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 NJ56_04160 7f1aa20edaffe869344a7aa8a20fe0fe 293 Pfam PF02666 Phosphatidylserine decarboxylase 63 284 5.5E-60 T 15-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 NJ56_04160 7f1aa20edaffe869344a7aa8a20fe0fe 293 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 287 48.647 T 15-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 NJ56_00365 85ff02a5b91159498cae095b8c374dbd 129 PIRSF PIRSF000178 2 129 1.8E-30 T 15-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00365 85ff02a5b91159498cae095b8c374dbd 129 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 84 97 - T 15-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00365 85ff02a5b91159498cae095b8c374dbd 129 SUPERFAMILY SSF81343 3 129 6.38E-34 T 15-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00365 85ff02a5b91159498cae095b8c374dbd 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 126 3.2E-38 T 15-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00365 85ff02a5b91159498cae095b8c374dbd 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 123 6.1E-29 T 15-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00365 85ff02a5b91159498cae095b8c374dbd 129 Gene3D G3DSA:1.20.1300.10 1 129 6.2E-45 T 15-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_00365 85ff02a5b91159498cae095b8c374dbd 129 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 9 33 - T 15-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 NJ56_14170 10444c27f1f4048e4d6bcb6cb01de7d5 221 Gene3D G3DSA:1.10.150.240 20 91 3.4E-58 T 15-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 NJ56_14170 10444c27f1f4048e4d6bcb6cb01de7d5 221 Gene3D G3DSA:3.40.50.1000 10 202 3.4E-58 T 15-10-2018 IPR023214 HAD superfamily NJ56_14170 10444c27f1f4048e4d6bcb6cb01de7d5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 1.8E-5 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_14170 10444c27f1f4048e4d6bcb6cb01de7d5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 1.8E-5 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_14170 10444c27f1f4048e4d6bcb6cb01de7d5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 1.8E-5 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_14170 10444c27f1f4048e4d6bcb6cb01de7d5 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 190 1.0E-27 T 15-10-2018 NJ56_14170 10444c27f1f4048e4d6bcb6cb01de7d5 221 SUPERFAMILY SSF56784 6 217 1.84E-50 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_14170 10444c27f1f4048e4d6bcb6cb01de7d5 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 191 3.5E-12 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_16290 5c7245a890c0e36eb3493badf53bcb5c 448 Pfam PF02321 Outer membrane efflux protein 24 216 1.1E-19 T 15-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 NJ56_16290 5c7245a890c0e36eb3493badf53bcb5c 448 Pfam PF02321 Outer membrane efflux protein 242 426 4.3E-21 T 15-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 NJ56_16290 5c7245a890c0e36eb3493badf53bcb5c 448 SUPERFAMILY SSF56954 22 444 4.71E-71 T 15-10-2018 NJ56_16290 5c7245a890c0e36eb3493badf53bcb5c 448 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 443 6.0E-116 T 15-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 NJ56_16290 5c7245a890c0e36eb3493badf53bcb5c 448 Gene3D G3DSA:1.20.1600.10 23 448 4.8E-83 T 15-10-2018 NJ56_14830 29444ad7efc08abc3bee127da45f4f7c 63 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 17 63 7.0E-19 T 15-10-2018 NJ56_14830 29444ad7efc08abc3bee127da45f4f7c 63 Pfam PF13617 YnbE-like lipoprotein 9 61 5.7E-26 T 15-10-2018 IPR025985 YnbE-like lipoprotein NJ56_01665 d4bc5c7b903255cb91584f7e14ba226a 155 Gene3D G3DSA:3.40.630.30 2 152 1.5E-31 T 15-10-2018 NJ56_01665 d4bc5c7b903255cb91584f7e14ba226a 155 Pfam PF00583 Acetyltransferase (GNAT) family 56 141 2.4E-13 T 15-10-2018 IPR000182 GNAT domain NJ56_01665 d4bc5c7b903255cb91584f7e14ba226a 155 SUPERFAMILY SSF55729 2 147 3.77E-24 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_01010 8fc348e51c0cd923a99d089707351712 174 PIRSF PIRSF001338 10 173 2.9E-66 T 15-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 NJ56_01010 8fc348e51c0cd923a99d089707351712 174 Gene3D G3DSA:3.40.50.7700 1 174 2.3E-77 T 15-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 NJ56_01010 8fc348e51c0cd923a99d089707351712 174 Pfam PF00731 AIR carboxylase 14 162 7.7E-63 T 15-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 NJ56_01010 8fc348e51c0cd923a99d089707351712 174 SUPERFAMILY SSF52255 14 172 8.24E-66 T 15-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 NJ56_01010 8fc348e51c0cd923a99d089707351712 174 SMART SM01001 13 164 2.1E-100 T 15-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 NJ56_01010 8fc348e51c0cd923a99d089707351712 174 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 15 169 4.6E-65 T 15-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 NJ56_01010 8fc348e51c0cd923a99d089707351712 174 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 15 168 32.046 T 15-10-2018 IPR033747 Class I PurE NJ56_06900 1892bea53bf6c964002e970c607d625f 565 Gene3D G3DSA:3.30.565.10 425 559 1.2E-11 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_06900 1892bea53bf6c964002e970c607d625f 565 SUPERFAMILY SSF55874 426 558 3.97E-12 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_06900 1892bea53bf6c964002e970c607d625f 565 SUPERFAMILY SSF55781 236 357 9.32E-6 T 15-10-2018 NJ56_06900 1892bea53bf6c964002e970c607d625f 565 Pfam PF06580 Histidine kinase 373 450 2.9E-25 T 15-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 NJ56_06900 1892bea53bf6c964002e970c607d625f 565 Pfam PF07694 5TMR of 5TMR-LYT 30 198 1.6E-57 T 15-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 NJ56_09135 7c3a0fd83dfb4692ed66901e58a52e75 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 187 39.51 T 15-10-2018 IPR003774 Protein of unknown function UPF0301 NJ56_09135 7c3a0fd83dfb4692ed66901e58a52e75 187 Gene3D G3DSA:3.40.1740.10 1 187 3.8E-65 T 15-10-2018 NJ56_09135 7c3a0fd83dfb4692ed66901e58a52e75 187 SUPERFAMILY SSF143456 1 187 2.09E-66 T 15-10-2018 NJ56_09135 7c3a0fd83dfb4692ed66901e58a52e75 187 Pfam PF02622 Uncharacterized ACR, COG1678 12 174 1.6E-49 T 15-10-2018 IPR003774 Protein of unknown function UPF0301 NJ56_15870 c653100c0458460c2a8c7fddadf5a941 69 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 4.2E-24 T 15-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NJ56_15870 c653100c0458460c2a8c7fddadf5a941 69 Pfam PF09723 Zinc ribbon domain 1 41 1.1E-17 T 15-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NJ56_15870 c653100c0458460c2a8c7fddadf5a941 69 SMART SM00834 1 42 8.3E-21 T 15-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NJ56_01850 344a8d3994d1e3c463d1c7dd1f612c62 243 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 26 242 5.8E-67 T 15-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase NJ56_01850 344a8d3994d1e3c463d1c7dd1f612c62 243 Gene3D G3DSA:3.60.140.10 1 243 3.9E-93 T 15-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily NJ56_01850 344a8d3994d1e3c463d1c7dd1f612c62 243 SUPERFAMILY SSF64438 3 242 5.86E-84 T 15-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic NJ56_01850 344a8d3994d1e3c463d1c7dd1f612c62 243 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 241 7.1E-74 T 15-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase NJ56_16265 a8c42be6d9008279cd3233e6dabdda95 369 Pfam PF01699 Sodium/calcium exchanger protein 42 192 1.7E-13 T 15-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 NJ56_16265 a8c42be6d9008279cd3233e6dabdda95 369 Pfam PF01699 Sodium/calcium exchanger protein 227 366 8.5E-8 T 15-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 NJ56_16265 a8c42be6d9008279cd3233e6dabdda95 369 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 11 367 2.0E-104 T 15-10-2018 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 SUPERFAMILY SSF52540 7 226 1.19E-7 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 SUPERFAMILY SSF46894 829 895 2.18E-17 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 Gene3D G3DSA:1.25.40.10 440 811 1.5E-97 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 853 869 2.2E-10 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 881 2.2E-10 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 839 853 2.2E-10 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 Hamap MF_01247 HTH-type transcriptional regulator MalT [malT]. 1 902 36.875 T 15-10-2018 IPR023768 Transcriptional regulator HTH-type, MalT NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 Gene3D G3DSA:1.10.10.10 828 900 1.4E-18 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 SUPERFAMILY SSF48452 442 806 1.58E-157 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 ProSitePatterns PS00622 LuxR-type HTH domain signature. 853 880 - T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 SMART SM00421 836 893 7.9E-21 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_06950 a99db7927959216ae1c7519f22c1bbbb 904 Pfam PF00196 Bacterial regulatory proteins, luxR family 838 891 2.1E-19 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_13140 ec4d91690cffc7fd4475a4d6d61146fa 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 214 4.7E-23 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_13140 ec4d91690cffc7fd4475a4d6d61146fa 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 9.5E-32 T 15-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 NJ56_13140 ec4d91690cffc7fd4475a4d6d61146fa 222 SUPERFAMILY SSF161098 13 206 1.64E-48 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_13140 ec4d91690cffc7fd4475a4d6d61146fa 222 Gene3D G3DSA:1.10.3720.10 4 219 3.9E-60 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_15700 2cb9aa9ac8ee4e3f151d91f6e88b3841 524 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 511 9.9E-282 T 15-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 NJ56_15700 2cb9aa9ac8ee4e3f151d91f6e88b3841 524 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 511 3.3E-279 T 15-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 NJ56_15700 2cb9aa9ac8ee4e3f151d91f6e88b3841 524 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 524 362.355 T 15-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 NJ56_17505 e3c1db8c549a95ae0f6c051767978b36 296 SUPERFAMILY SSF103481 187 290 1.05E-13 T 15-10-2018 NJ56_17505 e3c1db8c549a95ae0f6c051767978b36 296 Pfam PF00892 EamA-like transporter family 16 144 1.1E-21 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_17505 e3c1db8c549a95ae0f6c051767978b36 296 Pfam PF00892 EamA-like transporter family 153 287 2.4E-17 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_17505 e3c1db8c549a95ae0f6c051767978b36 296 SUPERFAMILY SSF103481 45 147 2.48E-13 T 15-10-2018 NJ56_07350 90fc43a3bb24f971db296808438d5a7b 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 52 1.8E-15 T 15-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain NJ56_07350 90fc43a3bb24f971db296808438d5a7b 64 Gene3D G3DSA:1.10.10.1100 1 57 2.3E-19 T 15-10-2018 NJ56_00305 38c7918b2938e281293acde359336bf2 107 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 16 106 5.9E-39 T 15-10-2018 IPR011846 Cyd operon protein YbgE NJ56_00305 38c7918b2938e281293acde359336bf2 107 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 27 104 6.9E-30 T 15-10-2018 IPR011846 Cyd operon protein YbgE NJ56_04955 05dcabd68c6e5a197f6fbaee40f8ba44 604 Pfam PF02554 Carbon starvation protein CstA 6 370 7.5E-138 T 15-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 NJ56_04955 05dcabd68c6e5a197f6fbaee40f8ba44 604 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 419 540 1.5E-27 T 15-10-2018 IPR025299 CstA, C-terminal domain NJ56_13030 34d2ede939cee8abb34ef9771c1d936a 403 Pfam PF02120 Flagellar hook-length control protein FliK 265 347 9.8E-21 T 15-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal NJ56_13030 34d2ede939cee8abb34ef9771c1d936a 403 PRINTS PR01007 Flagellar hook-length control protein signature 255 277 2.0E-34 T 15-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 NJ56_13030 34d2ede939cee8abb34ef9771c1d936a 403 PRINTS PR01007 Flagellar hook-length control protein signature 280 298 2.0E-34 T 15-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 NJ56_13030 34d2ede939cee8abb34ef9771c1d936a 403 PRINTS PR01007 Flagellar hook-length control protein signature 313 336 2.0E-34 T 15-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 NJ56_13030 34d2ede939cee8abb34ef9771c1d936a 403 PRINTS PR01007 Flagellar hook-length control protein signature 37 50 2.0E-34 T 15-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 NJ56_13030 34d2ede939cee8abb34ef9771c1d936a 403 PRINTS PR01007 Flagellar hook-length control protein signature 298 313 2.0E-34 T 15-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 NJ56_13030 34d2ede939cee8abb34ef9771c1d936a 403 PRINTS PR01007 Flagellar hook-length control protein signature 232 254 2.0E-34 T 15-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 NJ56_13030 34d2ede939cee8abb34ef9771c1d936a 403 Gene3D G3DSA:3.30.750.140 246 361 7.1E-36 T 15-10-2018 IPR038610 FliK-like, C-terminal domain superfamily NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 Gene3D G3DSA:3.30.450.20 40 180 1.5E-40 T 15-10-2018 NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 SMART SM00387 429 537 7.4E-23 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 433 535 5.8E-16 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 Gene3D G3DSA:3.30.565.10 386 534 6.1E-27 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 331 383 1.6E-11 T 15-10-2018 IPR039506 SpoOB, alpha-helical domain NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 Pfam PF17203 Single cache domain 3 47 178 1.4E-20 T 15-10-2018 IPR033463 Single cache domain 3 NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 SUPERFAMILY SSF55785 219 321 4.57E-6 T 15-10-2018 IPR035965 PAS domain superfamily NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 482 9.2E-10 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 534 9.2E-10 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 515 9.2E-10 T 15-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 Gene3D G3DSA:3.30.450.20 208 324 9.4E-25 T 15-10-2018 NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 SUPERFAMILY SSF55874 399 535 1.11E-26 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 Pfam PF00989 PAS fold 221 322 4.0E-7 T 15-10-2018 IPR013767 PAS fold GO:0006355 NJ56_16320 347d8ccfa330115cef57f33cc18d78c0 543 SUPERFAMILY SSF103190 46 177 1.05E-34 T 15-10-2018 IPR029151 Periplasmic sensor-like domain superfamily NJ56_13235 5a2296c0f9a11d16f484c56af94a9228 388 Pfam PF05954 Phage late control gene D protein (GPD) 45 367 9.3E-32 T 15-10-2018 NJ56_13235 5a2296c0f9a11d16f484c56af94a9228 388 SUPERFAMILY SSF69279 15 188 6.8E-26 T 15-10-2018 NJ56_02140 1879dc6ee164e72053ecd5fbaea6bc72 656 Pfam PF04888 Secretion system effector C (SseC) like family 335 652 1.8E-28 T 15-10-2018 IPR006972 Secretion system effector C, SseC-like GO:0009405 NJ56_00545 8fb1905f6fbe1375179653ecd8b5d9e2 250 Pfam PF13242 HAD-hyrolase-like 174 246 1.0E-19 T 15-10-2018 NJ56_00545 8fb1905f6fbe1375179653ecd8b5d9e2 250 Gene3D G3DSA:3.40.50.1000 6 232 2.1E-84 T 15-10-2018 IPR023214 HAD superfamily NJ56_00545 8fb1905f6fbe1375179653ecd8b5d9e2 250 Pfam PF13344 Haloacid dehalogenase-like hydrolase 6 105 1.2E-23 T 15-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA NJ56_00545 8fb1905f6fbe1375179653ecd8b5d9e2 250 SUPERFAMILY SSF56784 1 247 2.84E-64 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_00545 8fb1905f6fbe1375179653ecd8b5d9e2 250 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 6 223 1.0E-61 T 15-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA NJ56_00545 8fb1905f6fbe1375179653ecd8b5d9e2 250 Gene3D G3DSA:3.40.50.1000 71 174 2.1E-84 T 15-10-2018 IPR023214 HAD superfamily NJ56_15440 66537d32fee6b3a81ac395869c0047eb 107 Hamap MF_00680 UPF0263 protein YciU [yciU]. 3 107 34.225 T 15-10-2018 IPR007376 dsDNA mimic, putative NJ56_15440 66537d32fee6b3a81ac395869c0047eb 107 Pfam PF04269 Protein of unknown function, DUF440 6 107 2.2E-46 T 15-10-2018 IPR007376 dsDNA mimic, putative NJ56_15440 66537d32fee6b3a81ac395869c0047eb 107 Gene3D G3DSA:3.10.450.140 7 107 7.0E-42 T 15-10-2018 IPR036763 Putative dsDNA mimic superfamily NJ56_15440 66537d32fee6b3a81ac395869c0047eb 107 SUPERFAMILY SSF102816 1 107 6.67E-51 T 15-10-2018 IPR036763 Putative dsDNA mimic superfamily NJ56_15440 66537d32fee6b3a81ac395869c0047eb 107 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 5 107 2.0E-50 T 15-10-2018 IPR007376 dsDNA mimic, putative NJ56_15440 66537d32fee6b3a81ac395869c0047eb 107 PIRSF PIRSF004916 1 107 3.2E-55 T 15-10-2018 IPR007376 dsDNA mimic, putative NJ56_08045 4ccb751594cae5f2f2c3ce886912d762 67 Pfam PF07869 Protein of unknown function (DUF1656) 7 61 6.6E-21 T 15-10-2018 IPR012451 Protein of unknown function DUF1656 NJ56_08045 4ccb751594cae5f2f2c3ce886912d762 67 Hamap MF_01546 Protein AaeX [aaeX]. 1 67 23.132 T 15-10-2018 IPR012451 Protein of unknown function DUF1656 NJ56_15875 d3519908415f09426109d6f388b0a514 271 SUPERFAMILY SSF117396 2 251 1.83E-64 T 15-10-2018 IPR036520 UPF0759 superfamily NJ56_15875 d3519908415f09426109d6f388b0a514 271 Gene3D G3DSA:3.20.20.410 1 253 9.1E-41 T 15-10-2018 IPR036520 UPF0759 superfamily NJ56_15875 d3519908415f09426109d6f388b0a514 271 Pfam PF01904 Protein of unknown function DUF72 20 248 2.4E-52 T 15-10-2018 IPR002763 Protein of unknown function DUF72 NJ56_15655 f8f3058bed7012c83a64c41ef649e7ce 261 TIGRFAM TIGR01252 acetolac_decarb: alpha-acetolactate decarboxylase 30 258 1.1E-91 T 15-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 NJ56_15655 f8f3058bed7012c83a64c41ef649e7ce 261 Gene3D G3DSA:3.30.1330.80 31 247 4.2E-82 T 15-10-2018 NJ56_15655 f8f3058bed7012c83a64c41ef649e7ce 261 PIRSF PIRSF001332 14 261 1.8E-95 T 15-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 NJ56_15655 f8f3058bed7012c83a64c41ef649e7ce 261 Pfam PF03306 Alpha-acetolactate decarboxylase 31 247 1.3E-85 T 15-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 NJ56_15655 f8f3058bed7012c83a64c41ef649e7ce 261 SUPERFAMILY SSF117856 30 260 5.75E-84 T 15-10-2018 NJ56_15655 f8f3058bed7012c83a64c41ef649e7ce 261 Gene3D G3DSA:3.30.1330.80 106 228 4.2E-82 T 15-10-2018 NJ56_01155 c80c51ae729fcb89b4a90d13e3d52790 261 Gene3D G3DSA:3.90.550.10 4 261 1.2E-76 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_01155 c80c51ae729fcb89b4a90d13e3d52790 261 SUPERFAMILY SSF53448 5 261 8.97E-68 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_01155 c80c51ae729fcb89b4a90d13e3d52790 261 Pfam PF00483 Nucleotidyl transferase 6 204 6.7E-19 T 15-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 NJ56_01155 c80c51ae729fcb89b4a90d13e3d52790 261 TIGRFAM TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase 5 260 1.2E-146 T 15-10-2018 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940 NJ56_04285 15b5393e0db9827adc3f2976df2526de 191 Gene3D G3DSA:1.10.357.10 1 184 5.6E-26 T 15-10-2018 NJ56_04285 15b5393e0db9827adc3f2976df2526de 191 SUPERFAMILY SSF48498 75 164 3.41E-5 T 15-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NJ56_04285 15b5393e0db9827adc3f2976df2526de 191 SUPERFAMILY SSF46689 3 66 6.67E-9 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_17095 6bee750fe50933ad212369fafd3c93ae 242 SUPERFAMILY SSF52540 3 233 1.01E-68 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17095 6bee750fe50933ad212369fafd3c93ae 242 Pfam PF00005 ABC transporter 20 170 5.2E-35 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_17095 6bee750fe50933ad212369fafd3c93ae 242 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_17095 6bee750fe50933ad212369fafd3c93ae 242 PIRSF PIRSF039085 1 242 3.1E-83 T 15-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 NJ56_17095 6bee750fe50933ad212369fafd3c93ae 242 SMART SM00382 27 218 1.2E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_17095 6bee750fe50933ad212369fafd3c93ae 242 Gene3D G3DSA:3.40.50.300 1 241 6.3E-70 T 15-10-2018 NJ56_09750 ad793dcc7c35bc64a5ba6239ed3b1fef 388 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 11 387 42.9 T 15-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 NJ56_09750 ad793dcc7c35bc64a5ba6239ed3b1fef 388 Pfam PF02684 Lipid-A-disaccharide synthetase 14 382 1.6E-142 T 15-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 NJ56_09750 ad793dcc7c35bc64a5ba6239ed3b1fef 388 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 6 385 4.8E-171 T 15-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 NJ56_09750 ad793dcc7c35bc64a5ba6239ed3b1fef 388 SUPERFAMILY SSF53756 14 359 9.42E-27 T 15-10-2018 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 SUPERFAMILY SSF51735 232 376 1.85E-32 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 Gene3D G3DSA:3.40.50.720 2 139 9.8E-51 T 15-10-2018 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 Gene3D G3DSA:3.40.50.720 233 366 1.1E-35 T 15-10-2018 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 SUPERFAMILY SSF51735 1 152 2.14E-37 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 2.0E-35 T 15-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 2.0E-35 T 15-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 2.0E-35 T 15-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 2.0E-35 T 15-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 2.0E-35 T 15-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 SUPERFAMILY SSF116726 148 226 2.75E-10 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 Pfam PF02080 TrkA-C domain 390 451 9.7E-10 T 15-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 Pfam PF02080 TrkA-C domain 156 225 6.1E-12 T 15-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 Gene3D G3DSA:3.30.70.1450 367 458 3.3E-28 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 Pfam PF02254 TrkA-N domain 235 350 2.2E-24 T 15-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 Pfam PF02254 TrkA-N domain 3 124 4.8E-31 T 15-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 SUPERFAMILY SSF116726 390 440 3.27E-7 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_07515 9fa80e7f2c76336835ff3b0d9841154c 458 Gene3D G3DSA:3.30.70.1450 140 232 1.5E-22 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.658 T 15-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 15-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 Gene3D G3DSA:1.10.150.570 570 622 1.2E-23 T 15-10-2018 NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 Pfam PF01134 Glucose inhibited division protein A 8 397 2.1E-168 T 15-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 1.3E-293 T 15-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 Gene3D G3DSA:1.10.10.1800 459 550 1.8E-29 T 15-10-2018 NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 15-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 Gene3D G3DSA:3.50.50.60 2 243 9.2E-91 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 Gene3D G3DSA:3.50.50.60 293 458 4.6E-56 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 SUPERFAMILY SSF51905 6 261 7.46E-50 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 SMART SM01228 546 617 2.7E-45 T 15-10-2018 NJ56_06220 ee4f6e47c968680a3c6704aebcf1f3ca 629 Pfam PF13932 GidA associated domain 402 616 9.8E-76 T 15-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 NJ56_03875 2dce2d7ff7e092f2979421363336fc2f 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 3.5E-39 T 15-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03875 2dce2d7ff7e092f2979421363336fc2f 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 26.961 T 15-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03875 2dce2d7ff7e092f2979421363336fc2f 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 3.6E-44 T 15-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_03875 2dce2d7ff7e092f2979421363336fc2f 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 15-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_03875 2dce2d7ff7e092f2979421363336fc2f 103 SUPERFAMILY SSF141091 1 102 2.35E-38 T 15-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_12610 451a8cc0b457547595d0b3e414a242fb 692 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 501 677 3.0E-12 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_12610 451a8cc0b457547595d0b3e414a242fb 692 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 209 400 9.3E-18 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_12610 451a8cc0b457547595d0b3e414a242fb 692 Gene3D G3DSA:1.10.3720.10 139 410 5.6E-52 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_12610 451a8cc0b457547595d0b3e414a242fb 692 Gene3D G3DSA:1.10.3720.10 426 688 9.9E-45 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_12610 451a8cc0b457547595d0b3e414a242fb 692 SUPERFAMILY SSF161098 434 674 8.32E-44 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_12610 451a8cc0b457547595d0b3e414a242fb 692 SUPERFAMILY SSF161098 140 405 2.83E-44 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_16170 2f062f5bf3490fd628a17cc7310a7052 259 Pfam PF01300 Telomere recombination 22 185 1.6E-9 T 15-10-2018 IPR006070 YrdC-like domain GO:0003725 NJ56_16170 2f062f5bf3490fd628a17cc7310a7052 259 Gene3D G3DSA:3.90.870.10 1 259 1.0E-104 T 15-10-2018 NJ56_16170 2f062f5bf3490fd628a17cc7310a7052 259 SUPERFAMILY SSF55821 5 192 9.77E-20 T 15-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 328 344 - T 15-10-2018 IPR013793 Porin, Gram-negative type, conserved site NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 SUPERFAMILY SSF56935 22 376 2.38E-85 T 15-10-2018 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 149 171 1.0E-68 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 1.0E-68 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 1.0E-68 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 1.0E-68 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 284 303 1.0E-68 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 246 263 1.0E-68 T 15-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 Pfam PF00267 Gram-negative porin 27 376 7.6E-146 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 Gene3D G3DSA:2.40.160.10 22 376 6.4E-154 T 15-10-2018 IPR023614 Porin domain superfamily NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 240 252 1.8E-16 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 1.8E-16 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 1.8E-16 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 151 162 1.8E-16 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_11865 949c5faf5e05e3dea25ce08b8aaaa1df 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 328 345 1.8E-16 T 15-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 NJ56_07315 d28e9761569d4fb170efa309fe2647ec 121 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 6 121 3.0E-46 T 15-10-2018 IPR017462 Sulphur relay, TusC/DsrF NJ56_07315 d28e9761569d4fb170efa309fe2647ec 121 Pfam PF02635 DsrE/DsrF-like family 4 121 7.0E-23 T 15-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein NJ56_07315 d28e9761569d4fb170efa309fe2647ec 121 Gene3D G3DSA:3.40.1260.10 3 121 4.6E-38 T 15-10-2018 IPR027396 DsrEFH-like NJ56_07315 d28e9761569d4fb170efa309fe2647ec 121 Hamap MF_00389 Protein TusC [tusC]. 3 121 35.542 T 15-10-2018 IPR037450 Sulphur relay, TusC NJ56_07315 d28e9761569d4fb170efa309fe2647ec 121 SUPERFAMILY SSF75169 3 121 1.57E-36 T 15-10-2018 IPR027396 DsrEFH-like NJ56_15580 ec2e1fd41319900507a663d69ef92586 183 PIRSF PIRSF000232 1 182 1.1E-60 T 15-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like NJ56_15580 ec2e1fd41319900507a663d69ef92586 183 Pfam PF00881 Nitroreductase family 8 161 8.0E-20 T 15-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 NJ56_15580 ec2e1fd41319900507a663d69ef92586 183 SUPERFAMILY SSF55469 1 180 4.06E-36 T 15-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 NJ56_15580 ec2e1fd41319900507a663d69ef92586 183 Gene3D G3DSA:3.40.109.10 1 181 3.0E-39 T 15-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 NJ56_00610 3406786ed2fc5abe168e6f94fc09e124 511 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 10 494 24.557 T 15-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 NJ56_00610 3406786ed2fc5abe168e6f94fc09e124 511 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 63 456 3.7E-109 T 15-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 NJ56_00610 3406786ed2fc5abe168e6f94fc09e124 511 Gene3D G3DSA:3.60.110.10 213 476 6.4E-11 T 15-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily NJ56_00610 3406786ed2fc5abe168e6f94fc09e124 511 Pfam PF00795 Carbon-nitrogen hydrolase 224 474 1.2E-38 T 15-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 NJ56_00610 3406786ed2fc5abe168e6f94fc09e124 511 SUPERFAMILY SSF56317 216 488 1.7E-41 T 15-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily NJ56_16720 ed068e0d24197e91ac1c8aebc9862706 150 PIRSF PIRSF028777 1 139 9.9E-54 T 15-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 NJ56_16720 ed068e0d24197e91ac1c8aebc9862706 150 Pfam PF03733 Inner membrane component domain 77 127 1.5E-18 T 15-10-2018 IPR005185 Inner membrane component domain NJ56_16720 ed068e0d24197e91ac1c8aebc9862706 150 Pfam PF03733 Inner membrane component domain 5 53 1.1E-9 T 15-10-2018 IPR005185 Inner membrane component domain NJ56_16980 ce93e33727c497c3e6ead9fa2cd9268b 203 SUPERFAMILY SSF89392 23 202 3.02E-55 T 15-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX NJ56_16980 ce93e33727c497c3e6ead9fa2cd9268b 203 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 1 203 4.5E-99 T 15-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 NJ56_16980 ce93e33727c497c3e6ead9fa2cd9268b 203 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 8 201 31.975 T 15-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 NJ56_16980 ce93e33727c497c3e6ead9fa2cd9268b 203 Gene3D G3DSA:2.50.20.10 20 202 5.7E-53 T 15-10-2018 NJ56_16980 ce93e33727c497c3e6ead9fa2cd9268b 203 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 32 191 5.1E-58 T 15-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like NJ56_10050 a72a936192f840b842714e49f829d251 201 Gene3D G3DSA:3.40.50.10490 9 199 5.6E-47 T 15-10-2018 NJ56_10050 a72a936192f840b842714e49f829d251 201 SUPERFAMILY SSF53697 16 190 1.05E-34 T 15-10-2018 NJ56_10050 a72a936192f840b842714e49f829d251 201 Pfam PF01380 SIS domain 40 169 2.1E-19 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_16515 cbf1ec8a44ad07ff085d6c2258137732 265 Pfam PF01063 Amino-transferase class IV 24 245 5.9E-46 T 15-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 NJ56_16515 cbf1ec8a44ad07ff085d6c2258137732 265 SUPERFAMILY SSF56752 2 258 1.96E-65 T 15-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 NJ56_16515 cbf1ec8a44ad07ff085d6c2258137732 265 Gene3D G3DSA:3.20.10.10 121 265 4.6E-50 T 15-10-2018 NJ56_16515 cbf1ec8a44ad07ff085d6c2258137732 265 ProSitePatterns PS00770 Aminotransferases class-IV signature. 173 202 - T 15-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 NJ56_16515 cbf1ec8a44ad07ff085d6c2258137732 265 Gene3D G3DSA:3.30.470.10 1 108 3.7E-31 T 15-10-2018 NJ56_16515 cbf1ec8a44ad07ff085d6c2258137732 265 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 3 263 2.0E-115 T 15-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 NJ56_03610 f3483d7e5acc380ff21dfb8e2be405c7 149 Gene3D G3DSA:3.40.50.10110 1 146 1.2E-51 T 15-10-2018 IPR036768 DNA polymerase III subunit chi superfamily NJ56_03610 f3483d7e5acc380ff21dfb8e2be405c7 149 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 142 3.1E-39 T 15-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 NJ56_03610 f3483d7e5acc380ff21dfb8e2be405c7 149 SUPERFAMILY SSF102400 1 143 4.58E-47 T 15-10-2018 IPR036768 DNA polymerase III subunit chi superfamily NJ56_17700 7815af2e4649d81ea48b3b654e07bba1 195 Pfam PF09673 Type-F conjugative transfer system pilin assembly protein 54 175 1.3E-26 T 15-10-2018 IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC NJ56_06210 1585732e497e8c31f5f3359e5b0d8eab 146 Pfam PF00258 Flavodoxin 7 138 1.1E-28 T 15-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 NJ56_06210 1585732e497e8c31f5f3359e5b0d8eab 146 Gene3D G3DSA:3.40.50.360 1 146 1.4E-50 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_06210 1585732e497e8c31f5f3359e5b0d8eab 146 SUPERFAMILY SSF52218 1 146 1.52E-40 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_06210 1585732e497e8c31f5f3359e5b0d8eab 146 PRINTS PR00369 Flavodoxin signature 51 62 1.8E-8 T 15-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 NJ56_06210 1585732e497e8c31f5f3359e5b0d8eab 146 PRINTS PR00369 Flavodoxin signature 82 92 1.8E-8 T 15-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 NJ56_06210 1585732e497e8c31f5f3359e5b0d8eab 146 PRINTS PR00369 Flavodoxin signature 5 18 1.8E-8 T 15-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 NJ56_06210 1585732e497e8c31f5f3359e5b0d8eab 146 PRINTS PR00369 Flavodoxin signature 106 125 1.8E-8 T 15-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 NJ56_03380 aa73006048a798a59bbf645db3383d6c 230 SUPERFAMILY SSF56935 50 230 5.23E-15 T 15-10-2018 NJ56_03380 aa73006048a798a59bbf645db3383d6c 230 Gene3D G3DSA:2.40.160.40 23 230 1.1E-67 T 15-10-2018 NJ56_03380 aa73006048a798a59bbf645db3383d6c 230 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 16 230 3.1E-90 T 15-10-2018 IPR009331 Oligogalacturonate-specific porin NJ56_12425 90a4d4100f66df926ffa374b7437ee04 135 SUPERFAMILY SSF52200 61 110 7.46E-6 T 15-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily NJ56_12425 90a4d4100f66df926ffa374b7437ee04 135 Gene3D G3DSA:3.40.50.10140 50 114 2.9E-6 T 15-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily NJ56_10550 80bb99d3b197256dc009fa09e60450fc 174 Pfam PF00226 DnaJ domain 2 70 2.0E-7 T 15-10-2018 IPR001623 DnaJ domain NJ56_10550 80bb99d3b197256dc009fa09e60450fc 174 Pfam PF07743 HSCB C-terminal oligomerisation domain 88 163 7.0E-15 T 15-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 NJ56_10550 80bb99d3b197256dc009fa09e60450fc 174 SUPERFAMILY SSF46565 1 74 1.83E-19 T 15-10-2018 IPR036869 Chaperone J-domain superfamily NJ56_10550 80bb99d3b197256dc009fa09e60450fc 174 SUPERFAMILY SSF47144 78 171 1.1E-23 T 15-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 NJ56_10550 80bb99d3b197256dc009fa09e60450fc 174 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 170 25.83 T 15-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 NJ56_10550 80bb99d3b197256dc009fa09e60450fc 174 Gene3D G3DSA:1.20.1280.20 80 171 1.2E-23 T 15-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 NJ56_10550 80bb99d3b197256dc009fa09e60450fc 174 Gene3D G3DSA:1.10.287.110 1 79 3.8E-25 T 15-10-2018 IPR036869 Chaperone J-domain superfamily NJ56_10550 80bb99d3b197256dc009fa09e60450fc 174 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 169 6.8E-52 T 15-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 NJ56_10550 80bb99d3b197256dc009fa09e60450fc 174 SMART SM00271 1 66 2.6E-11 T 15-10-2018 IPR001623 DnaJ domain NJ56_08755 6a5228357909d756a5cca237ef084a3b 194 SUPERFAMILY SSF52218 1 191 1.02E-42 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_08755 6a5228357909d756a5cca237ef084a3b 194 Gene3D G3DSA:3.40.50.360 1 192 8.8E-65 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_08755 6a5228357909d756a5cca237ef084a3b 194 Pfam PF02525 Flavodoxin-like fold 3 188 2.3E-37 T 15-10-2018 IPR003680 Flavodoxin-like fold NJ56_06460 7c633add03f15bf9bc2b76ac6cdf6ca0 150 Gene3D G3DSA:3.40.630.30 1 142 4.9E-32 T 15-10-2018 NJ56_06460 7c633add03f15bf9bc2b76ac6cdf6ca0 150 Pfam PF13673 Acetyltransferase (GNAT) domain 46 129 1.4E-14 T 15-10-2018 IPR000182 GNAT domain NJ56_06460 7c633add03f15bf9bc2b76ac6cdf6ca0 150 SUPERFAMILY SSF55729 1 130 1.51E-24 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_04045 f5aacb6d71eddc9610c4905b6b0a102f 207 Pfam PF06551 Protein of unknown function (DUF1120) 32 99 2.0E-5 T 15-10-2018 IPR010546 Protein of unknown function DUF1120 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 422 442 2.1E-63 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 407 422 2.1E-63 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 74 94 2.1E-63 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 340 364 2.1E-63 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 32 55 2.1E-63 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 307 328 2.1E-63 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 387 2.1E-63 T 15-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 Gene3D G3DSA:1.10.287.470 96 190 1.4E-8 T 15-10-2018 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 Gene3D G3DSA:1.10.287.470 194 294 6.0E-12 T 15-10-2018 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 ProSitePatterns PS00543 HlyD family secretion proteins signature. 407 429 - T 15-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 Gene3D G3DSA:2.40.50.100 62 95 1.4E-8 T 15-10-2018 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 Gene3D G3DSA:2.40.50.100 295 331 6.0E-12 T 15-10-2018 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 Gene3D G3DSA:2.40.30.170 332 420 6.0E-12 T 15-10-2018 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 Gene3D G3DSA:2.40.30.170 50 60 1.4E-8 T 15-10-2018 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 Pfam PF00529 HlyD membrane-fusion protein of T1SS 34 401 1.6E-16 T 15-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 25 443 6.4E-117 T 15-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 NJ56_16295 2edfd7398d21405de583334b7b3bb3e7 443 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 252 374 4.3E-9 T 15-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NJ56_12875 d8e95b398a8196cee321e08e1d682359 842 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 315 325 - T 15-10-2018 IPR018030 Fimbrial membrane usher, conserved site NJ56_12875 d8e95b398a8196cee321e08e1d682359 842 Gene3D G3DSA:2.60.40.2610 662 753 2.8E-13 T 15-10-2018 NJ56_12875 d8e95b398a8196cee321e08e1d682359 842 SUPERFAMILY SSF141729 34 155 3.92E-32 T 15-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 NJ56_12875 d8e95b398a8196cee321e08e1d682359 842 Pfam PF00577 Outer membrane usher protein 198 748 1.5E-180 T 15-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 NJ56_12875 d8e95b398a8196cee321e08e1d682359 842 Pfam PF13954 PapC N-terminal domain 36 181 4.2E-39 T 15-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 NJ56_12875 d8e95b398a8196cee321e08e1d682359 842 Gene3D G3DSA:3.10.20.410 34 157 2.0E-21 T 15-10-2018 NJ56_12875 d8e95b398a8196cee321e08e1d682359 842 Gene3D G3DSA:2.60.40.2070 757 833 1.9E-28 T 15-10-2018 NJ56_12875 d8e95b398a8196cee321e08e1d682359 842 Gene3D G3DSA:2.60.40.3110 273 361 2.3E-26 T 15-10-2018 NJ56_12875 d8e95b398a8196cee321e08e1d682359 842 Pfam PF13953 PapC C-terminal domain 758 815 3.9E-15 T 15-10-2018 IPR025949 PapC-like, C-terminal domain NJ56_03440 c1ae68d3f034e109cf9a11eb0cf53390 355 SMART SM00506 1 132 9.9E-16 T 15-10-2018 IPR002589 Macro domain NJ56_03440 c1ae68d3f034e109cf9a11eb0cf53390 355 Gene3D G3DSA:3.40.220.10 1 148 3.8E-40 T 15-10-2018 NJ56_03440 c1ae68d3f034e109cf9a11eb0cf53390 355 SUPERFAMILY SSF52949 1 148 5.38E-44 T 15-10-2018 NJ56_03440 c1ae68d3f034e109cf9a11eb0cf53390 355 Pfam PF01661 Macro domain 18 129 3.4E-18 T 15-10-2018 IPR002589 Macro domain NJ56_16130 3c239b9e63ba628cce3f79e62ac675e9 184 SUPERFAMILY SSF54862 18 116 4.6E-23 T 15-10-2018 NJ56_16130 3c239b9e63ba628cce3f79e62ac675e9 184 Pfam PF12838 4Fe-4S dicluster domain 39 89 2.7E-13 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_16130 3c239b9e63ba628cce3f79e62ac675e9 184 Gene3D G3DSA:3.30.70.3270 18 131 1.7E-24 T 15-10-2018 NJ56_16130 3c239b9e63ba628cce3f79e62ac675e9 184 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_16130 3c239b9e63ba628cce3f79e62ac675e9 184 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_09755 16dc4795f84c5f336cbfe83a02263721 198 Pfam PF01351 Ribonuclease HII 14 190 9.9E-40 T 15-10-2018 IPR024567 Ribonuclease HII/HIII domain NJ56_09755 16dc4795f84c5f336cbfe83a02263721 198 Gene3D G3DSA:3.30.420.10 2 197 3.7E-74 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_09755 16dc4795f84c5f336cbfe83a02263721 198 SUPERFAMILY SSF53098 5 196 3.79E-69 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_09755 16dc4795f84c5f336cbfe83a02263721 198 Hamap MF_00052_B Ribonuclease HII [rnhB]. 12 191 39.76 T 15-10-2018 IPR022898 Ribonuclease HII GO:0004523 NJ56_16465 8ced4ee403f5ee7048d75374fd2d64e2 343 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 3 332 48.451 T 15-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 NJ56_16465 8ced4ee403f5ee7048d75374fd2d64e2 343 SUPERFAMILY SSF51445 3 297 8.63E-84 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_16465 8ced4ee403f5ee7048d75374fd2d64e2 343 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 11 292 7.6E-94 T 15-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 NJ56_16465 8ced4ee403f5ee7048d75374fd2d64e2 343 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 234 251 - T 15-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 NJ56_16465 8ced4ee403f5ee7048d75374fd2d64e2 343 Gene3D G3DSA:3.20.20.300 1 343 5.4E-132 T 15-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 NJ56_15995 ca7a56f1231e5cb75ed9640303e8959f 376 SMART SM00267 177 351 4.0E-49 T 15-10-2018 IPR000160 GGDEF domain NJ56_15995 ca7a56f1231e5cb75ed9640303e8959f 376 SUPERFAMILY SSF55073 199 350 1.33E-41 T 15-10-2018 IPR029787 Nucleotide cyclase NJ56_15995 ca7a56f1231e5cb75ed9640303e8959f 376 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 192 351 2.6E-43 T 15-10-2018 IPR000160 GGDEF domain NJ56_15995 ca7a56f1231e5cb75ed9640303e8959f 376 Gene3D G3DSA:3.30.70.270 185 352 5.6E-49 T 15-10-2018 NJ56_15995 ca7a56f1231e5cb75ed9640303e8959f 376 Pfam PF00990 Diguanylate cyclase, GGDEF domain 194 347 1.3E-42 T 15-10-2018 IPR000160 GGDEF domain NJ56_02600 3bb9020f3217f1558598f92a6f45c9c8 254 Gene3D G3DSA:1.20.120.530 97 236 9.2E-29 T 15-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal NJ56_02600 3bb9020f3217f1558598f92a6f45c9c8 254 SMART SM00895 99 227 2.6E-18 T 15-10-2018 IPR011711 GntR, C-terminal NJ56_02600 3bb9020f3217f1558598f92a6f45c9c8 254 Gene3D G3DSA:1.10.10.10 1 75 3.0E-28 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_02600 3bb9020f3217f1558598f92a6f45c9c8 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 2.5E-25 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_02600 3bb9020f3217f1558598f92a6f45c9c8 254 SMART SM00345 15 74 2.3E-29 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_02600 3bb9020f3217f1558598f92a6f45c9c8 254 SUPERFAMILY SSF48008 95 235 8.11E-21 T 15-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal NJ56_02600 3bb9020f3217f1558598f92a6f45c9c8 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 2.9E-11 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_02600 3bb9020f3217f1558598f92a6f45c9c8 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 2.9E-11 T 15-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 NJ56_02600 3bb9020f3217f1558598f92a6f45c9c8 254 SUPERFAMILY SSF46785 5 77 1.44E-22 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_02600 3bb9020f3217f1558598f92a6f45c9c8 254 Pfam PF07729 FCD domain 99 226 2.1E-18 T 15-10-2018 IPR011711 GntR, C-terminal NJ56_04100 06363285a5b5ad84ef02ae81ade0f63a 101 SUPERFAMILY SSF50182 7 69 5.02E-24 T 15-10-2018 IPR010920 LSM domain superfamily NJ56_04100 06363285a5b5ad84ef02ae81ade0f63a 101 Pfam PF17209 Hfq protein 7 69 7.8E-31 T 15-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 NJ56_04100 06363285a5b5ad84ef02ae81ade0f63a 101 Gene3D G3DSA:2.30.30.100 1 72 1.5E-34 T 15-10-2018 NJ56_04100 06363285a5b5ad84ef02ae81ade0f63a 101 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.8E-29 T 15-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 NJ56_04100 06363285a5b5ad84ef02ae81ade0f63a 101 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.244 T 15-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 NJ56_12825 b0593cb07186fa8b4c732e0c7f176004 129 Pfam PF00072 Response regulator receiver domain 9 120 1.1E-31 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_12825 b0593cb07186fa8b4c732e0c7f176004 129 Gene3D G3DSA:3.40.50.2300 2 129 1.1E-38 T 15-10-2018 NJ56_12825 b0593cb07186fa8b4c732e0c7f176004 129 SUPERFAMILY SSF52172 5 125 8.11E-37 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_12825 b0593cb07186fa8b4c732e0c7f176004 129 SMART SM00448 6 120 2.1E-35 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_14680 d0eb5a73ca21551004da83111c8f6c74 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 291 3.3E-22 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_14680 d0eb5a73ca21551004da83111c8f6c74 296 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 66 2.2E-8 T 15-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain NJ56_14680 d0eb5a73ca21551004da83111c8f6c74 296 Gene3D G3DSA:1.10.3720.10 85 292 2.9E-18 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_14680 d0eb5a73ca21551004da83111c8f6c74 296 SUPERFAMILY SSF161098 90 277 1.02E-22 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_01640 c12ad57f656e267b1d264bd22db9820b 256 Gene3D G3DSA:1.10.10.10 1 67 2.9E-14 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_01640 c12ad57f656e267b1d264bd22db9820b 256 Gene3D G3DSA:3.30.450.40 73 248 5.4E-27 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_01640 c12ad57f656e267b1d264bd22db9820b 256 Pfam PF09339 IclR helix-turn-helix domain 7 59 1.1E-6 T 15-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 NJ56_01640 c12ad57f656e267b1d264bd22db9820b 256 Pfam PF01614 Bacterial transcriptional regulator 125 239 2.8E-16 T 15-10-2018 IPR014757 Transcription regulator IclR, C-terminal NJ56_01640 c12ad57f656e267b1d264bd22db9820b 256 SMART SM00346 1 95 1.5E-8 T 15-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 NJ56_01640 c12ad57f656e267b1d264bd22db9820b 256 SUPERFAMILY SSF46785 2 79 9.54E-10 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_01640 c12ad57f656e267b1d264bd22db9820b 256 SUPERFAMILY SSF55781 64 248 2.75E-31 T 15-10-2018 NJ56_00800 de8ed4f5dd70790145b6484b5cc63902 608 SUPERFAMILY SSF53448 111 462 4.97E-28 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_00800 de8ed4f5dd70790145b6484b5cc63902 608 Gene3D G3DSA:3.90.550.10 99 320 2.2E-42 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_00800 de8ed4f5dd70790145b6484b5cc63902 608 Pfam PF00535 Glycosyl transferase family 2 113 305 4.5E-20 T 15-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 NJ56_11835 752d0c212d42c44a2e00ed95a02794fa 246 Pfam PF13489 Methyltransferase domain 57 186 1.4E-24 T 15-10-2018 NJ56_11835 752d0c212d42c44a2e00ed95a02794fa 246 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 16 234 2.8E-90 T 15-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 NJ56_11835 752d0c212d42c44a2e00ed95a02794fa 246 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 16 240 37.624 T 15-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 NJ56_11835 752d0c212d42c44a2e00ed95a02794fa 246 SUPERFAMILY SSF53335 20 238 4.59E-47 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_11835 752d0c212d42c44a2e00ed95a02794fa 246 Gene3D G3DSA:3.40.50.150 16 240 1.3E-77 T 15-10-2018 NJ56_09805 61083f11be3fdda676e44bd1f69440f5 66 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 1 66 2.0E-29 T 15-10-2018 IPR009624 Uncharacterised protein family UPF0253 NJ56_09805 61083f11be3fdda676e44bd1f69440f5 66 Pfam PF06786 Uncharacterised protein family (UPF0253) 2 65 6.6E-37 T 15-10-2018 IPR009624 Uncharacterised protein family UPF0253 NJ56_09805 61083f11be3fdda676e44bd1f69440f5 66 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 1 66 26.296 T 15-10-2018 IPR009624 Uncharacterised protein family UPF0253 NJ56_05845 15ae3dbee35fcc69d989067b7ccf0417 318 Pfam PF04748 Divergent polysaccharide deacetylase 18 228 1.5E-78 T 15-10-2018 IPR006837 Divergent polysaccharide deacetylase NJ56_05845 15ae3dbee35fcc69d989067b7ccf0417 318 Gene3D G3DSA:3.20.20.370 12 229 8.5E-75 T 15-10-2018 NJ56_05845 15ae3dbee35fcc69d989067b7ccf0417 318 SUPERFAMILY SSF88713 14 228 3.34E-73 T 15-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NJ56_02190 2ec33167f01b16b997d34a14507b7edf 135 PRINTS PR01305 Invasion protein B family signature 98 111 2.5E-16 T 15-10-2018 IPR003065 Surface presentation of antigens protein SpaK NJ56_02190 2ec33167f01b16b997d34a14507b7edf 135 PRINTS PR01305 Invasion protein B family signature 30 40 2.5E-16 T 15-10-2018 IPR003065 Surface presentation of antigens protein SpaK NJ56_02190 2ec33167f01b16b997d34a14507b7edf 135 PRINTS PR01305 Invasion protein B family signature 40 54 2.5E-16 T 15-10-2018 IPR003065 Surface presentation of antigens protein SpaK NJ56_02190 2ec33167f01b16b997d34a14507b7edf 135 PRINTS PR01305 Invasion protein B family signature 17 30 2.5E-16 T 15-10-2018 IPR003065 Surface presentation of antigens protein SpaK NJ56_02190 2ec33167f01b16b997d34a14507b7edf 135 PRINTS PR01305 Invasion protein B family signature 111 123 2.5E-16 T 15-10-2018 IPR003065 Surface presentation of antigens protein SpaK NJ56_02190 2ec33167f01b16b997d34a14507b7edf 135 Pfam PF03519 Invasion protein B family 17 94 2.6E-17 T 15-10-2018 IPR003065 Surface presentation of antigens protein SpaK NJ56_02190 2ec33167f01b16b997d34a14507b7edf 135 Gene3D G3DSA:3.30.1460.10 1 133 8.6E-31 T 15-10-2018 NJ56_02190 2ec33167f01b16b997d34a14507b7edf 135 SUPERFAMILY SSF69635 1 133 8.24E-36 T 15-10-2018 NJ56_10660 15d20ee5db3c0701c0c46660ebbe6845 650 Gene3D G3DSA:2.60.20.10 21 120 6.1E-16 T 15-10-2018 NJ56_10660 15d20ee5db3c0701c0c46660ebbe6845 650 Pfam PF00030 Beta/Gamma crystallin 34 118 2.1E-4 T 15-10-2018 IPR001064 Beta/gamma crystallin NJ56_10660 15d20ee5db3c0701c0c46660ebbe6845 650 SUPERFAMILY SSF49695 33 160 8.89E-9 T 15-10-2018 IPR011024 Gamma-crystallin-like NJ56_10660 15d20ee5db3c0701c0c46660ebbe6845 650 SMART SM00247 33 119 0.0026 T 15-10-2018 IPR001064 Beta/gamma crystallin NJ56_04035 f1a72b4d72a4d7a311d599e63077256d 809 SUPERFAMILY SSF141729 38 145 7.41E-8 T 15-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 NJ56_04035 f1a72b4d72a4d7a311d599e63077256d 809 Gene3D G3DSA:2.60.40.2610 634 725 6.9E-20 T 15-10-2018 NJ56_04035 f1a72b4d72a4d7a311d599e63077256d 809 Pfam PF00577 Outer membrane usher protein 181 721 3.6E-84 T 15-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 NJ56_04035 f1a72b4d72a4d7a311d599e63077256d 809 Pfam PF13954 PapC N-terminal domain 39 168 7.6E-11 T 15-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 NJ56_04035 f1a72b4d72a4d7a311d599e63077256d 809 Pfam PF13953 PapC C-terminal domain 730 793 3.8E-8 T 15-10-2018 IPR025949 PapC-like, C-terminal domain NJ56_04035 f1a72b4d72a4d7a311d599e63077256d 809 Gene3D G3DSA:2.60.40.3110 260 324 2.6E-19 T 15-10-2018 NJ56_15605 c1dacc7c18f67854803fed885ee02a82 137 Gene3D G3DSA:2.170.150.20 4 136 2.4E-58 T 15-10-2018 NJ56_15605 c1dacc7c18f67854803fed885ee02a82 137 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 2 129 37.088 T 15-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 NJ56_15605 c1dacc7c18f67854803fed885ee02a82 137 SUPERFAMILY SSF51316 8 131 3.77E-57 T 15-10-2018 IPR011057 Mss4-like superfamily NJ56_15605 c1dacc7c18f67854803fed885ee02a82 137 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 11 135 7.5E-59 T 15-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 NJ56_15605 c1dacc7c18f67854803fed885ee02a82 137 Pfam PF01641 SelR domain 12 127 1.5E-51 T 15-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 NJ56_12535 3cb85ed7b420b216392466584acb80d1 238 SUPERFAMILY SSF101082 41 222 1.02E-30 T 15-10-2018 NJ56_12535 3cb85ed7b420b216392466584acb80d1 238 Pfam PF07996 Type IV secretion system proteins 33 220 2.3E-40 T 15-10-2018 IPR014158 Type IV secretion system, VirB5 NJ56_12535 3cb85ed7b420b216392466584acb80d1 238 Gene3D G3DSA:1.20.58.430 27 223 1.4E-11 T 15-10-2018 IPR023220 Type IV secretion system, VirB5-domain NJ56_03930 0539abc5be6ea7fe7406ae92771224d5 1278 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 942 1278 5.2E-65 T 15-10-2018 IPR007452 Translocation and assembly module TamB NJ56_00205 7a1dc8cfc36f2880796d77633961034e 106 Pfam PF07769 psiF repeat 73 103 3.2E-16 T 15-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat NJ56_00205 7a1dc8cfc36f2880796d77633961034e 106 Pfam PF07769 psiF repeat 34 65 8.3E-17 T 15-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat NJ56_10320 3d6c89cf5f3d6c2b9e69699dd0772b0b 252 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 123 135 2.8E-5 T 15-10-2018 NJ56_10320 3d6c89cf5f3d6c2b9e69699dd0772b0b 252 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 153 177 2.8E-5 T 15-10-2018 NJ56_10320 3d6c89cf5f3d6c2b9e69699dd0772b0b 252 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 55 69 2.8E-5 T 15-10-2018 NJ56_10320 3d6c89cf5f3d6c2b9e69699dd0772b0b 252 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 18 252 54.476 T 15-10-2018 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 NJ56_10320 3d6c89cf5f3d6c2b9e69699dd0772b0b 252 Pfam PF05175 Methyltransferase small domain 48 138 2.0E-15 T 15-10-2018 IPR007848 Methyltransferase small domain GO:0008168 NJ56_10320 3d6c89cf5f3d6c2b9e69699dd0772b0b 252 SUPERFAMILY SSF53335 19 206 2.09E-32 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_10320 3d6c89cf5f3d6c2b9e69699dd0772b0b 252 Gene3D G3DSA:3.40.50.150 17 248 3.0E-58 T 15-10-2018 NJ56_10320 3d6c89cf5f3d6c2b9e69699dd0772b0b 252 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 126 132 - T 15-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NJ56_06615 2f8e04c096ad438a050582477f576f2b 139 Pfam PF13708 Domain of unknown function (DUF4942) 16 132 1.5E-34 T 15-10-2018 IPR031339 Domain of unknown function DUF4942 NJ56_07160 82ee07f9512a19aa3b36de06d0f1b1d2 394 Pfam PF07690 Major Facilitator Superfamily 15 321 6.4E-21 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_07160 82ee07f9512a19aa3b36de06d0f1b1d2 394 Gene3D G3DSA:1.20.1250.20 206 388 2.1E-19 T 15-10-2018 NJ56_07160 82ee07f9512a19aa3b36de06d0f1b1d2 394 Hamap MF_01044 Protein TsgA [tsgA]. 1 390 28.605 T 15-10-2018 IPR023528 Major facilitator superfamily transporter, TsgA NJ56_07160 82ee07f9512a19aa3b36de06d0f1b1d2 394 SUPERFAMILY SSF103473 4 389 3.4E-37 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_07160 82ee07f9512a19aa3b36de06d0f1b1d2 394 Gene3D G3DSA:1.20.1250.20 2 187 1.6E-16 T 15-10-2018 NJ56_08605 f533dda6902772a7bbc52eda7205038f 238 Pfam PF00106 short chain dehydrogenase 2 179 8.4E-37 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_08605 f533dda6902772a7bbc52eda7205038f 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.9E-16 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_08605 f533dda6902772a7bbc52eda7205038f 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 158 4.9E-16 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_08605 f533dda6902772a7bbc52eda7205038f 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 177 4.9E-16 T 15-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR NJ56_08605 f533dda6902772a7bbc52eda7205038f 238 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 126 154 - T 15-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NJ56_08605 f533dda6902772a7bbc52eda7205038f 238 Gene3D G3DSA:3.40.50.720 1 237 5.6E-49 T 15-10-2018 NJ56_08605 f533dda6902772a7bbc52eda7205038f 238 SUPERFAMILY SSF51735 2 235 9.66E-50 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_12065 446dd359b1988bdecc8deabb8d49b825 576 Gene3D G3DSA:3.40.50.300 40 257 8.2E-17 T 15-10-2018 NJ56_12065 446dd359b1988bdecc8deabb8d49b825 576 Pfam PF03354 Phage Terminase 84 556 1.6E-67 T 15-10-2018 IPR005021 Terminase large subunit, Lambdalikevirus-type NJ56_10460 7bd81ea44853c7bce51dd54122bcef89 432 Pfam PF10797 Protein of unknown function 5 428 6.5E-166 T 15-10-2018 IPR019733 Uncharacterised protein family YhfT NJ56_00010 0ed904996c22c5fdb5ee4e0b723ad8c0 311 Gene3D G3DSA:3.40.710.10 23 307 1.6E-64 T 15-10-2018 NJ56_00010 0ed904996c22c5fdb5ee4e0b723ad8c0 311 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 35 265 1.6E-78 T 15-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 NJ56_00010 0ed904996c22c5fdb5ee4e0b723ad8c0 311 SUPERFAMILY SSF56601 4 281 2.28E-61 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_00010 0ed904996c22c5fdb5ee4e0b723ad8c0 311 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 70 81 5.3E-13 T 15-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NJ56_00010 0ed904996c22c5fdb5ee4e0b723ad8c0 311 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 120 137 5.3E-13 T 15-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NJ56_00010 0ed904996c22c5fdb5ee4e0b723ad8c0 311 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 147 160 5.3E-13 T 15-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NJ56_09515 99858705a6b589c242caa65c44da3841 264 Pfam PF00303 Thymidylate synthase 2 264 1.4E-126 T 15-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09515 99858705a6b589c242caa65c44da3841 264 SUPERFAMILY SSF55831 1 264 3.53E-131 T 15-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09515 99858705a6b589c242caa65c44da3841 264 Gene3D G3DSA:3.30.572.10 1 264 5.3E-135 T 15-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09515 99858705a6b589c242caa65c44da3841 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 15-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09515 99858705a6b589c242caa65c44da3841 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 1.4E-41 T 15-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09515 99858705a6b589c242caa65c44da3841 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 3.5E-94 T 15-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09515 99858705a6b589c242caa65c44da3841 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 3.0E-47 T 15-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09515 99858705a6b589c242caa65c44da3841 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 3.0E-47 T 15-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09515 99858705a6b589c242caa65c44da3841 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 3.0E-47 T 15-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09515 99858705a6b589c242caa65c44da3841 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 3.0E-47 T 15-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09515 99858705a6b589c242caa65c44da3841 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 3.0E-47 T 15-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09515 99858705a6b589c242caa65c44da3841 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 39.988 T 15-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_17055 60689dac00c9cc620206c97ac130aefb 298 Pfam PF03956 Lysine exporter LysO 113 297 3.5E-56 T 15-10-2018 IPR005642 Lysine exporter LysO NJ56_17055 60689dac00c9cc620206c97ac130aefb 298 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 152 284 2.0E-52 T 15-10-2018 IPR005642 Lysine exporter LysO NJ56_11510 d7c2411e9f0d5548a1686888508054ec 336 SMART SM00859 6 121 6.8E-36 T 15-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NJ56_11510 d7c2411e9f0d5548a1686888508054ec 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 119 1.0E-25 T 15-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NJ56_11510 d7c2411e9f0d5548a1686888508054ec 336 Gene3D G3DSA:3.30.360.10 130 314 2.9E-109 T 15-10-2018 NJ56_11510 d7c2411e9f0d5548a1686888508054ec 336 SUPERFAMILY SSF55347 132 318 1.8E-50 T 15-10-2018 NJ56_11510 d7c2411e9f0d5548a1686888508054ec 336 SUPERFAMILY SSF51735 5 157 6.65E-45 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_11510 d7c2411e9f0d5548a1686888508054ec 336 Gene3D G3DSA:3.40.50.720 7 328 2.9E-109 T 15-10-2018 NJ56_11510 d7c2411e9f0d5548a1686888508054ec 336 PIRSF PIRSF000148 4 336 9.8E-97 T 15-10-2018 NJ56_11510 d7c2411e9f0d5548a1686888508054ec 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 316 8.5E-34 T 15-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 NJ56_09155 2ac3919f6bf19df35ebf52e44a83925b 170 Hamap MF_00746 Protein SprT [sprT]. 12 165 40.899 T 15-10-2018 IPR023483 Uncharacterised protein family SprT NJ56_09155 2ac3919f6bf19df35ebf52e44a83925b 170 Pfam PF10263 SprT-like family 20 119 1.1E-18 T 15-10-2018 IPR006640 SprT-like NJ56_09155 2ac3919f6bf19df35ebf52e44a83925b 170 Pfam PF17283 SprT-like zinc ribbon domain 125 164 1.3E-10 T 15-10-2018 IPR035240 SprT-like, zinc ribbon domain NJ56_09155 2ac3919f6bf19df35ebf52e44a83925b 170 SMART SM00731 16 165 1.0E-60 T 15-10-2018 IPR006640 SprT-like NJ56_07660 327ffea16d10ed0aaa6c54904e89ac7d 356 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 101 242 4.7E-11 T 15-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain NJ56_07660 327ffea16d10ed0aaa6c54904e89ac7d 356 Pfam PF17482 Phage tail sheath C-terminal domain 246 350 4.1E-12 T 15-10-2018 IPR020287 Tail sheath protein, C-terminal domain NJ56_09540 13a07e05532e1445631f38540d94fa6d 118 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 8.0E-5 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_09540 13a07e05532e1445631f38540d94fa6d 118 Pfam PF12528 Type II secretion prepilin peptidase dependent protein C 35 115 3.4E-16 T 15-10-2018 IPR022204 Prepilin peptidase dependent protein C NJ56_09540 13a07e05532e1445631f38540d94fa6d 118 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 33 1.1E-5 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_09540 13a07e05532e1445631f38540d94fa6d 118 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_14280 3148bb5d39afb3583636c7cd2c0c5e03 98 Pfam PF05154 TM2 domain 33 83 1.2E-18 T 15-10-2018 IPR007829 TM2 domain NJ56_03450 f2a6219a6cd145589ec6a4949fb4d3d9 191 Pfam PF14487 Domain of unknown function (DUF4433) 11 188 1.0E-21 T 15-10-2018 IPR029494 Domain of unknown function DUF4433 NJ56_18270 770eabda2900719ed6484b94c88f04ee 451 Pfam PF08867 FRG domain 191 283 6.9E-22 T 15-10-2018 IPR014966 FRG domain NJ56_18270 770eabda2900719ed6484b94c88f04ee 451 SMART SM00901 188 288 5.4E-32 T 15-10-2018 IPR014966 FRG domain NJ56_15460 5560322fcfba6e139be9bc3b94ddd4d8 306 SUPERFAMILY SSF161098 89 291 4.8E-21 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_15460 5560322fcfba6e139be9bc3b94ddd4d8 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 2.8E-39 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_15460 5560322fcfba6e139be9bc3b94ddd4d8 306 Gene3D G3DSA:1.10.3720.10 84 301 9.1E-21 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_14575 1db1cf1533c2b5c0d140203cbd6278c2 545 Pfam PF00884 Sulfatase 237 526 8.4E-46 T 15-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 NJ56_14575 1db1cf1533c2b5c0d140203cbd6278c2 545 Gene3D G3DSA:3.40.720.10 224 545 1.2E-86 T 15-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 NJ56_14575 1db1cf1533c2b5c0d140203cbd6278c2 545 Pfam PF08019 Domain of unknown function (DUF1705) 56 208 1.3E-50 T 15-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 NJ56_14575 1db1cf1533c2b5c0d140203cbd6278c2 545 SUPERFAMILY SSF53649 237 530 2.62E-19 T 15-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 NJ56_09690 e061c79c4ec6d213934f479999b354ab 285 SUPERFAMILY SSF54713 144 283 1.09E-52 T 15-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 NJ56_09690 e061c79c4ec6d213934f479999b354ab 285 SUPERFAMILY SSF46934 4 55 8.98E-18 T 15-10-2018 IPR009060 UBA-like superfamily GO:0005515 NJ56_09690 e061c79c4ec6d213934f479999b354ab 285 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 284 7.6E-116 T 15-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 NJ56_09690 e061c79c4ec6d213934f479999b354ab 285 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 15-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 NJ56_09690 e061c79c4ec6d213934f479999b354ab 285 Pfam PF00889 Elongation factor TS 73 265 2.6E-66 T 15-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 NJ56_09690 e061c79c4ec6d213934f479999b354ab 285 SUPERFAMILY SSF54713 56 141 3.92E-21 T 15-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 NJ56_09690 e061c79c4ec6d213934f479999b354ab 285 Hamap MF_00050 Elongation factor Ts [tsf]. 1 282 79.421 T 15-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 NJ56_09690 e061c79c4ec6d213934f479999b354ab 285 Gene3D G3DSA:1.10.8.10 1 56 3.2E-25 T 15-10-2018 NJ56_09690 e061c79c4ec6d213934f479999b354ab 285 Gene3D G3DSA:3.30.479.20 57 143 2.9E-30 T 15-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 NJ56_09690 e061c79c4ec6d213934f479999b354ab 285 Gene3D G3DSA:1.10.286.20 189 228 1.1E-23 T 15-10-2018 NJ56_12995 692411015387da432772f735675931a8 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 3.8E-30 T 15-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NJ56_12995 692411015387da432772f735675931a8 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 2.3E-23 T 15-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NJ56_12995 692411015387da432772f735675931a8 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 2.3E-23 T 15-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NJ56_12995 692411015387da432772f735675931a8 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 2.3E-23 T 15-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NJ56_12995 692411015387da432772f735675931a8 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 7.0E-33 T 15-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 NJ56_12995 692411015387da432772f735675931a8 89 PIRSF PIRSF004669 1 89 1.8E-32 T 15-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NJ56_12720 b5596edf0eb7d3ca18860ce692a1c249 336 SMART SM00829 20 334 5.0E-53 T 15-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 NJ56_12720 b5596edf0eb7d3ca18860ce692a1c249 336 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 11 336 2.0E-144 T 15-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 NJ56_12720 b5596edf0eb7d3ca18860ce692a1c249 336 Gene3D G3DSA:3.40.50.720 130 273 4.5E-102 T 15-10-2018 NJ56_12720 b5596edf0eb7d3ca18860ce692a1c249 336 Pfam PF00107 Zinc-binding dehydrogenase 161 285 7.0E-26 T 15-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 NJ56_12720 b5596edf0eb7d3ca18860ce692a1c249 336 SUPERFAMILY SSF50129 11 147 1.52E-37 T 15-10-2018 IPR011032 GroES-like superfamily NJ56_12720 b5596edf0eb7d3ca18860ce692a1c249 336 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 38 112 7.2E-9 T 15-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 NJ56_12720 b5596edf0eb7d3ca18860ce692a1c249 336 Gene3D G3DSA:3.90.180.10 24 334 4.5E-102 T 15-10-2018 NJ56_12720 b5596edf0eb7d3ca18860ce692a1c249 336 SUPERFAMILY SSF51735 121 297 2.7E-50 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_03560 9fee314141d95b1f5f091b8b2029361c 411 Pfam PF09019 EcoRII C terminal 234 404 9.2E-64 T 15-10-2018 IPR015109 Restriction endonuclease, type II, EcoRII, C-terminal GO:0003677|GO:0009036|GO:0009307 NJ56_03560 9fee314141d95b1f5f091b8b2029361c 411 Gene3D G3DSA:3.40.91.80 229 411 8.3E-34 T 15-10-2018 IPR038365 EcoRII, C-terminal domain superfamily NJ56_03560 9fee314141d95b1f5f091b8b2029361c 411 SUPERFAMILY SSF52980 185 408 8.04E-57 T 15-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 NJ56_15760 53494bcd06366338516a80158a53590c 192 Pfam PF03843 Outer membrane lipoprotein Slp family 22 171 2.3E-48 T 15-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 NJ56_15760 53494bcd06366338516a80158a53590c 192 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 16 188 2.9E-63 T 15-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 NJ56_15760 53494bcd06366338516a80158a53590c 192 PIRSF PIRSF004982 8 191 2.2E-50 T 15-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 7.3E-17 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 7.3E-17 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 7.3E-17 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 7.3E-17 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 Gene3D G3DSA:1.10.40.30 382 445 3.1E-158 T 15-10-2018 NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 Gene3D G3DSA:1.10.275.10 1 117 7.9E-53 T 15-10-2018 IPR024083 Fumarase/histidase, N-terminal NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 SUPERFAMILY SSF48557 10 454 5.81E-105 T 15-10-2018 IPR008948 L-Aspartase-like GO:0003824 NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 3.5E-152 T 15-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 15-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 1.3E-52 T 15-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 Pfam PF00206 Lyase 14 312 1.6E-78 T 15-10-2018 IPR022761 Fumarate lyase, N-terminal NJ56_16385 aad60fd7be2be55d2ea98b0edbedc1bf 456 Gene3D G3DSA:1.20.200.10 118 446 3.1E-158 T 15-10-2018 NJ56_10605 37f20a58c8811bf8f1db631bd64bee1a 249 Pfam PF13181 Tetratricopeptide repeat 36 66 0.042 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_10605 37f20a58c8811bf8f1db631bd64bee1a 249 SMART SM00028 67 100 19.0 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_10605 37f20a58c8811bf8f1db631bd64bee1a 249 SMART SM00028 33 66 0.047 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_10605 37f20a58c8811bf8f1db631bd64bee1a 249 SMART SM00028 137 170 0.85 T 15-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 NJ56_10605 37f20a58c8811bf8f1db631bd64bee1a 249 Pfam PF13431 Tetratricopeptide repeat 90 122 1.5E-5 T 15-10-2018 NJ56_10605 37f20a58c8811bf8f1db631bd64bee1a 249 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 9 236 1.0E-78 T 15-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW NJ56_10605 37f20a58c8811bf8f1db631bd64bee1a 249 SUPERFAMILY SSF48452 30 177 6.64E-18 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_10605 37f20a58c8811bf8f1db631bd64bee1a 249 Gene3D G3DSA:1.25.40.10 33 247 3.5E-39 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_17220 bff117224b0ba00197cd87990a675ab2 229 Gene3D G3DSA:1.20.1440.100 15 87 8.1E-63 T 15-10-2018 NJ56_17220 bff117224b0ba00197cd87990a675ab2 229 Gene3D G3DSA:3.40.50.1000 3 213 8.1E-63 T 15-10-2018 IPR023214 HAD superfamily NJ56_17220 bff117224b0ba00197cd87990a675ab2 229 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 200 5.4E-46 T 15-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like NJ56_17220 bff117224b0ba00197cd87990a675ab2 229 SUPERFAMILY SSF56784 1 205 1.04E-26 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_17220 bff117224b0ba00197cd87990a675ab2 229 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 187 3.9E-36 T 15-10-2018 NJ56_17220 bff117224b0ba00197cd87990a675ab2 229 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 188 1.9E-25 T 15-10-2018 NJ56_05570 ff4f4c77a8bd785d3131357d64a96e45 243 Pfam PF00462 Glutaredoxin 173 231 1.1E-19 T 15-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 NJ56_05570 ff4f4c77a8bd785d3131357d64a96e45 243 ProSitePatterns PS00195 Glutaredoxin active site. 175 191 - T 15-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 NJ56_05570 ff4f4c77a8bd785d3131357d64a96e45 243 Pfam PF08534 Redoxin 5 160 9.8E-34 T 15-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 NJ56_05570 ff4f4c77a8bd785d3131357d64a96e45 243 PRINTS PR00160 Glutaredoxin signature 228 241 6.4E-15 T 15-10-2018 IPR014025 Glutaredoxin subgroup NJ56_05570 ff4f4c77a8bd785d3131357d64a96e45 243 PRINTS PR00160 Glutaredoxin signature 214 227 6.4E-15 T 15-10-2018 IPR014025 Glutaredoxin subgroup NJ56_05570 ff4f4c77a8bd785d3131357d64a96e45 243 PRINTS PR00160 Glutaredoxin signature 173 191 6.4E-15 T 15-10-2018 IPR014025 Glutaredoxin subgroup NJ56_05570 ff4f4c77a8bd785d3131357d64a96e45 243 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 164 242 8.0E-41 T 15-10-2018 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 NJ56_05570 ff4f4c77a8bd785d3131357d64a96e45 243 Gene3D G3DSA:3.40.30.10 171 242 1.4E-24 T 15-10-2018 NJ56_05570 ff4f4c77a8bd785d3131357d64a96e45 243 SUPERFAMILY SSF52833 2 241 6.94E-47 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_05570 ff4f4c77a8bd785d3131357d64a96e45 243 Gene3D G3DSA:3.40.30.10 4 165 1.5E-62 T 15-10-2018 NJ56_04055 a0df5dd8d7e14a3358b8ca20ce6c372f 211 Pfam PF06551 Protein of unknown function (DUF1120) 36 106 1.7E-9 T 15-10-2018 IPR010546 Protein of unknown function DUF1120 NJ56_06310 653f46b6bf6068d3211c91874397f3a4 242 Gene3D G3DSA:1.20.58.220 118 233 2.8E-32 T 15-10-2018 IPR038078 PhoU-like domain superfamily NJ56_06310 653f46b6bf6068d3211c91874397f3a4 242 Gene3D G3DSA:1.20.58.220 1 117 1.5E-42 T 15-10-2018 IPR038078 PhoU-like domain superfamily NJ56_06310 653f46b6bf6068d3211c91874397f3a4 242 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 221 1.8E-73 T 15-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 NJ56_06310 653f46b6bf6068d3211c91874397f3a4 242 PIRSF PIRSF003107 7 226 4.7E-68 T 15-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 NJ56_06310 653f46b6bf6068d3211c91874397f3a4 242 SUPERFAMILY SSF109755 13 228 1.67E-70 T 15-10-2018 NJ56_06310 653f46b6bf6068d3211c91874397f3a4 242 Pfam PF01895 PhoU domain 26 111 2.8E-22 T 15-10-2018 IPR026022 PhoU domain NJ56_06310 653f46b6bf6068d3211c91874397f3a4 242 Pfam PF01895 PhoU domain 128 212 4.9E-17 T 15-10-2018 IPR026022 PhoU domain NJ56_12870 7f64967ed81e9138b6df05412cd98f7e 249 Gene3D G3DSA:2.60.40.10 24 143 5.4E-39 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_12870 7f64967ed81e9138b6df05412cd98f7e 249 Gene3D G3DSA:2.60.40.10 147 241 4.9E-23 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_12870 7f64967ed81e9138b6df05412cd98f7e 249 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 168 229 1.6E-15 T 15-10-2018 IPR016148 Pili assembly chaperone, C-terminal NJ56_12870 7f64967ed81e9138b6df05412cd98f7e 249 SUPERFAMILY SSF49354 25 146 1.62E-38 T 15-10-2018 IPR008962 PapD-like superfamily NJ56_12870 7f64967ed81e9138b6df05412cd98f7e 249 PRINTS PR00969 Pili chaperone signature 163 178 4.4E-32 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_12870 7f64967ed81e9138b6df05412cd98f7e 249 PRINTS PR00969 Pili chaperone signature 101 118 4.4E-32 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_12870 7f64967ed81e9138b6df05412cd98f7e 249 PRINTS PR00969 Pili chaperone signature 71 92 4.4E-32 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_12870 7f64967ed81e9138b6df05412cd98f7e 249 PRINTS PR00969 Pili chaperone signature 124 139 4.4E-32 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_12870 7f64967ed81e9138b6df05412cd98f7e 249 PRINTS PR00969 Pili chaperone signature 25 34 4.4E-32 T 15-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 NJ56_12870 7f64967ed81e9138b6df05412cd98f7e 249 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 25 142 7.5E-37 T 15-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 NJ56_12870 7f64967ed81e9138b6df05412cd98f7e 249 SUPERFAMILY SSF49584 152 241 5.23E-23 T 15-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily NJ56_11580 59ae06a0db78df4073bdf0dab626cf94 209 Gene3D G3DSA:1.20.1050.10 89 198 4.2E-83 T 15-10-2018 NJ56_11580 59ae06a0db78df4073bdf0dab626cf94 209 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 80 5.9E-13 T 15-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 NJ56_11580 59ae06a0db78df4073bdf0dab626cf94 209 Gene3D G3DSA:3.40.30.10 4 88 4.2E-83 T 15-10-2018 NJ56_11580 59ae06a0db78df4073bdf0dab626cf94 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 112 197 1.6E-15 T 15-10-2018 IPR004046 Glutathione S-transferase, C-terminal NJ56_11580 59ae06a0db78df4073bdf0dab626cf94 209 SUPERFAMILY SSF47616 78 204 2.32E-37 T 15-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NJ56_11580 59ae06a0db78df4073bdf0dab626cf94 209 SUPERFAMILY SSF52833 1 84 6.73E-22 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_18075 3975c99fd8c5614c10b613ed01a7ac8f 148 Pfam PF06290 Plasmid SOS inhibition protein (PsiB) 7 141 8.3E-44 T 15-10-2018 IPR009385 Protein PsiB NJ56_18075 3975c99fd8c5614c10b613ed01a7ac8f 148 Gene3D G3DSA:3.40.50.11880 3 147 1.4E-43 T 15-10-2018 IPR038131 Protein PsiB-like superfamily NJ56_14450 5a78dd6d1e6817c5cd369b0fdd60938a 503 SUPERFAMILY SSF101960 41 500 4.18E-134 T 15-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily NJ56_14450 5a78dd6d1e6817c5cd369b0fdd60938a 503 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 21 494 1.5E-193 T 15-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 NJ56_14450 5a78dd6d1e6817c5cd369b0fdd60938a 503 Pfam PF01458 Uncharacterized protein family (UPF0051) 242 474 8.5E-67 T 15-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 NJ56_13820 dd655a9f8285b2503df4df9c7dc7b1fc 47 Pfam PF13998 MgrB protein 19 47 3.1E-17 T 15-10-2018 IPR020907 PhoP/PhoQ regulator MgrB NJ56_03180 b1fc2e75c5d79601bd86804f4d21814b 147 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 12 142 3.7E-43 T 15-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 NJ56_03180 b1fc2e75c5d79601bd86804f4d21814b 147 SUPERFAMILY SSF55729 3 146 2.58E-31 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_03180 b1fc2e75c5d79601bd86804f4d21814b 147 Gene3D G3DSA:3.40.630.30 1 147 1.5E-44 T 15-10-2018 NJ56_03180 b1fc2e75c5d79601bd86804f4d21814b 147 Pfam PF00583 Acetyltransferase (GNAT) family 17 120 3.0E-15 T 15-10-2018 IPR000182 GNAT domain NJ56_01620 7d2e12645d6b86af32432d2b187f7fc5 95 Gene3D G3DSA:2.60.120.10 1 94 7.1E-32 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_01620 7d2e12645d6b86af32432d2b187f7fc5 95 SUPERFAMILY SSF51182 1 94 1.82E-31 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_01620 7d2e12645d6b86af32432d2b187f7fc5 95 Pfam PF06865 Protein of unknown function (DUF1255) 3 93 7.3E-32 T 15-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 NJ56_01620 7d2e12645d6b86af32432d2b187f7fc5 95 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 1 94 25.027 T 15-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 NJ56_13285 cb9c11b13315a100c17bac5f6ae4df78 302 PIRSF PIRSF020481 1 302 4.1E-126 T 15-10-2018 IPR014507 Baseplate assembly protein J, predicted NJ56_13285 cb9c11b13315a100c17bac5f6ae4df78 302 Pfam PF04865 Baseplate J-like protein 118 261 1.5E-26 T 15-10-2018 IPR006949 Baseplate protein J-like NJ56_07645 de3b0378e6ae14b589488013539d38ce 82 Pfam PF03400 IS1 transposase 2 59 5.2E-16 T 15-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 NJ56_02760 fa78e0e0057e2428ac56606d89ed256b 152 Gene3D G3DSA:2.40.330.20 1 150 1.5E-42 T 15-10-2018 IPR038619 MraZ superfamily NJ56_02760 fa78e0e0057e2428ac56606d89ed256b 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 6.8E-22 T 15-10-2018 IPR020603 MraZ domain NJ56_02760 fa78e0e0057e2428ac56606d89ed256b 152 Pfam PF02381 MraZ protein, putative antitoxin-like 77 140 3.2E-20 T 15-10-2018 IPR020603 MraZ domain NJ56_02760 fa78e0e0057e2428ac56606d89ed256b 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 56.273 T 15-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 NJ56_02760 fa78e0e0057e2428ac56606d89ed256b 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 152 2.2E-60 T 15-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 NJ56_02760 fa78e0e0057e2428ac56606d89ed256b 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 141 7.0E-73 T 15-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 NJ56_02760 fa78e0e0057e2428ac56606d89ed256b 152 SUPERFAMILY SSF89447 1 138 6.8E-45 T 15-10-2018 IPR037914 SpoVT-AbrB domain superfamily NJ56_04730 49fd5e0e54ef520726f10aa95bee70cd 253 Gene3D G3DSA:3.40.50.720 6 253 1.3E-98 T 15-10-2018 NJ56_04730 49fd5e0e54ef520726f10aa95bee70cd 253 SUPERFAMILY SSF69572 5 251 7.32E-85 T 15-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 NJ56_04730 49fd5e0e54ef520726f10aa95bee70cd 253 Pfam PF00899 ThiF family 14 246 5.0E-67 T 15-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 NJ56_17725 690cf88b74952d92ca7f07bc1f78c0e0 849 Gene3D G3DSA:3.40.50.300 447 758 1.1E-30 T 15-10-2018 NJ56_17725 690cf88b74952d92ca7f07bc1f78c0e0 849 SUPERFAMILY SSF52540 419 756 2.3E-23 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17725 690cf88b74952d92ca7f07bc1f78c0e0 849 Pfam PF01935 Domain of unknown function DUF87 448 659 1.9E-5 T 15-10-2018 IPR002789 Helicase HerA, central domain NJ56_17725 690cf88b74952d92ca7f07bc1f78c0e0 849 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 24 226 2.2E-27 T 15-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase NJ56_17725 690cf88b74952d92ca7f07bc1f78c0e0 849 Gene3D G3DSA:1.10.8.730 512 648 1.1E-30 T 15-10-2018 NJ56_16930 96f886ad88f9650c0299a71e373323ac 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 421 4.6E-152 T 15-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 NJ56_16930 96f886ad88f9650c0299a71e373323ac 428 ProSitePatterns PS00885 EPSP synthase signature 2. 339 357 - T 15-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 NJ56_16930 96f886ad88f9650c0299a71e373323ac 428 PIRSF PIRSF000505 2 427 7.6E-156 T 15-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 NJ56_16930 96f886ad88f9650c0299a71e373323ac 428 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 11 427 35.538 T 15-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 NJ56_16930 96f886ad88f9650c0299a71e373323ac 428 ProSitePatterns PS00104 EPSP synthase signature 1. 91 105 - T 15-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 NJ56_16930 96f886ad88f9650c0299a71e373323ac 428 SUPERFAMILY SSF55205 4 424 2.09E-145 T 15-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 NJ56_16930 96f886ad88f9650c0299a71e373323ac 428 Gene3D G3DSA:3.65.10.10 242 421 4.7E-160 T 15-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 NJ56_16930 96f886ad88f9650c0299a71e373323ac 428 Gene3D G3DSA:3.65.10.10 21 224 4.7E-160 T 15-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 NJ56_16930 96f886ad88f9650c0299a71e373323ac 428 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 15 424 1.8E-143 T 15-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 NJ56_02595 c322e3f5cf81933f44810d28a3ea981c 887 SUPERFAMILY SSF52518 59 469 6.66E-143 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_02595 c322e3f5cf81933f44810d28a3ea981c 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 106 294 1.9E-8 T 15-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 NJ56_02595 c322e3f5cf81933f44810d28a3ea981c 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 361 453 8.2E-5 T 15-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 NJ56_02595 c322e3f5cf81933f44810d28a3ea981c 887 Gene3D G3DSA:3.40.50.970 58 471 3.0E-135 T 15-10-2018 NJ56_02595 c322e3f5cf81933f44810d28a3ea981c 887 PIRSF PIRSF000156 1 887 0.0 T 15-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 NJ56_02595 c322e3f5cf81933f44810d28a3ea981c 887 SUPERFAMILY SSF52922 702 885 1.92E-61 T 15-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 NJ56_02595 c322e3f5cf81933f44810d28a3ea981c 887 Gene3D G3DSA:3.40.50.920 707 887 8.5E-73 T 15-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 NJ56_02595 c322e3f5cf81933f44810d28a3ea981c 887 Gene3D G3DSA:3.40.50.970 472 706 4.1E-112 T 15-10-2018 NJ56_02595 c322e3f5cf81933f44810d28a3ea981c 887 SUPERFAMILY SSF52518 474 701 1.53E-99 T 15-10-2018 IPR029061 Thiamin diphosphate-binding fold NJ56_02595 c322e3f5cf81933f44810d28a3ea981c 887 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 6 886 0.0 T 15-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 NJ56_07835 a01c47b1be09a33baed5c45eea68cd64 124 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 70 81 - T 15-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 NJ56_07835 a01c47b1be09a33baed5c45eea68cd64 124 Gene3D G3DSA:1.10.3830.10 2 122 5.0E-43 T 15-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 NJ56_07835 a01c47b1be09a33baed5c45eea68cd64 124 Pfam PF01219 Prokaryotic diacylglycerol kinase 17 117 7.0E-36 T 15-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 NJ56_03630 ac45596039c176475594d503163eb502 335 Gene3D G3DSA:3.40.50.1370 6 329 5.2E-139 T 15-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 NJ56_03630 ac45596039c176475594d503163eb502 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 1.9E-32 T 15-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 NJ56_03630 ac45596039c176475594d503163eb502 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 1.9E-32 T 15-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 NJ56_03630 ac45596039c176475594d503163eb502 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 1.9E-32 T 15-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 NJ56_03630 ac45596039c176475594d503163eb502 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 123 137 1.9E-32 T 15-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 NJ56_03630 ac45596039c176475594d503163eb502 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 1.9E-32 T 15-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 NJ56_03630 ac45596039c176475594d503163eb502 335 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 7 332 9.4E-136 T 15-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 NJ56_03630 ac45596039c176475594d503163eb502 335 Gene3D G3DSA:3.40.50.1370 150 319 5.2E-139 T 15-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 NJ56_03630 ac45596039c176475594d503163eb502 335 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 6 333 84.01 T 15-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 NJ56_03630 ac45596039c176475594d503163eb502 335 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 15-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NJ56_03630 ac45596039c176475594d503163eb502 335 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 147 3.5E-48 T 15-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 NJ56_03630 ac45596039c176475594d503163eb502 335 SUPERFAMILY SSF53671 2 332 1.14E-98 T 15-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 NJ56_03630 ac45596039c176475594d503163eb502 335 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 330 2.8E-54 T 15-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 NJ56_03630 ac45596039c176475594d503163eb502 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 6.8E-26 T 15-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NJ56_03630 ac45596039c176475594d503163eb502 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 6.8E-26 T 15-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NJ56_03630 ac45596039c176475594d503163eb502 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 6.8E-26 T 15-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NJ56_03630 ac45596039c176475594d503163eb502 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 6.8E-26 T 15-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NJ56_03175 24322742cb874657767899dc10965988 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 15-10-2018 IPR031157 Tr-type G domain, conserved site NJ56_03175 24322742cb874657767899dc10965988 529 SUPERFAMILY SSF54980 393 468 1.01E-16 T 15-10-2018 IPR035647 EF-G domain III/V-like NJ56_03175 24322742cb874657767899dc10965988 529 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.6E-11 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_03175 24322742cb874657767899dc10965988 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 6.6E-11 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_03175 24322742cb874657767899dc10965988 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.6E-11 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_03175 24322742cb874657767899dc10965988 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.6E-11 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_03175 24322742cb874657767899dc10965988 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 6.6E-11 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_03175 24322742cb874657767899dc10965988 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 153 1.3E-18 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_03175 24322742cb874657767899dc10965988 529 Gene3D G3DSA:3.40.50.300 110 275 1.6E-118 T 15-10-2018 NJ56_03175 24322742cb874657767899dc10965988 529 Pfam PF00009 Elongation factor Tu GTP binding domain 13 277 6.9E-46 T 15-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NJ56_03175 24322742cb874657767899dc10965988 529 SUPERFAMILY SSF50447 262 393 4.2E-29 T 15-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily NJ56_03175 24322742cb874657767899dc10965988 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 2.6E-12 T 15-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 NJ56_03175 24322742cb874657767899dc10965988 529 SUPERFAMILY SSF52540 10 277 3.14E-85 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03175 24322742cb874657767899dc10965988 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 4 529 0.0 T 15-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 NJ56_03175 24322742cb874657767899dc10965988 529 Gene3D G3DSA:3.30.70.3280 390 529 6.7E-52 T 15-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily NJ56_03175 24322742cb874657767899dc10965988 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 52.061 T 15-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 NJ56_03175 24322742cb874657767899dc10965988 529 Gene3D G3DSA:3.40.50.300 72 379 1.6E-118 T 15-10-2018 NJ56_03175 24322742cb874657767899dc10965988 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 9.0E-46 T 15-10-2018 IPR032090 Peptide chain release factor 3, C-terminal NJ56_04720 c2f3ae7df677fce3ff9764b1bcb07ab0 678 Pfam PF13667 ThiC-associated domain 44 125 8.9E-32 T 15-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 NJ56_04720 c2f3ae7df677fce3ff9764b1bcb07ab0 678 Pfam PF01964 Radical SAM ThiC family 166 614 6.1E-200 T 15-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 NJ56_04720 c2f3ae7df677fce3ff9764b1bcb07ab0 678 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 165 618 99.856 T 15-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 NJ56_04720 c2f3ae7df677fce3ff9764b1bcb07ab0 678 Gene3D G3DSA:3.20.20.540 236 549 2.3E-153 T 15-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 NJ56_04720 c2f3ae7df677fce3ff9764b1bcb07ab0 678 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 165 617 1.3E-223 T 15-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 NJ56_11245 116d45b5ba423e0df6670b2db712f282 409 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 20 377 2.3E-97 T 15-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 NJ56_11245 116d45b5ba423e0df6670b2db712f282 409 Pfam PF01566 Natural resistance-associated macrophage protein 38 384 4.1E-122 T 15-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 NJ56_11245 116d45b5ba423e0df6670b2db712f282 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 299 318 2.1E-30 T 15-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 NJ56_11245 116d45b5ba423e0df6670b2db712f282 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 125 144 2.1E-30 T 15-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 NJ56_11245 116d45b5ba423e0df6670b2db712f282 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 150 171 2.1E-30 T 15-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 NJ56_11245 116d45b5ba423e0df6670b2db712f282 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 200 223 2.1E-30 T 15-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 NJ56_11245 116d45b5ba423e0df6670b2db712f282 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 97 123 2.1E-30 T 15-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 NJ56_11245 116d45b5ba423e0df6670b2db712f282 409 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 1 409 36.751 T 15-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 NJ56_04010 4407067fc21af476be7cf7fa915cebbf 95 SUPERFAMILY SSF159871 5 95 4.19E-24 T 15-10-2018 IPR036275 YdgH-like superfamily NJ56_04010 4407067fc21af476be7cf7fa915cebbf 95 Pfam PF07338 Protein of unknown function (DUF1471) 41 95 1.8E-17 T 15-10-2018 IPR010854 Domain of unknown function DUF1471 NJ56_04010 4407067fc21af476be7cf7fa915cebbf 95 Gene3D G3DSA:3.30.1660.10 24 95 1.2E-19 T 15-10-2018 IPR025543 Dodecin-like NJ56_03880 d7ee37327809001e88701c7e40ccf741 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 15-10-2018 IPR033749 Polyprenyl synthetase, conserved site NJ56_03880 d7ee37327809001e88701c7e40ccf741 323 Pfam PF00348 Polyprenyl synthetase 31 262 2.7E-75 T 15-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 NJ56_03880 d7ee37327809001e88701c7e40ccf741 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 15-10-2018 IPR033749 Polyprenyl synthetase, conserved site NJ56_03880 d7ee37327809001e88701c7e40ccf741 323 SUPERFAMILY SSF48576 5 322 6.08E-99 T 15-10-2018 IPR008949 Isoprenoid synthase domain superfamily NJ56_03880 d7ee37327809001e88701c7e40ccf741 323 Gene3D G3DSA:1.10.600.10 1 322 6.9E-125 T 15-10-2018 IPR008949 Isoprenoid synthase domain superfamily NJ56_05395 64bbdfc78bda6165ef3c8fcced47374a 364 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 9 353 28.898 T 15-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 NJ56_05395 64bbdfc78bda6165ef3c8fcced47374a 364 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 8 350 4.4E-162 T 15-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 NJ56_05395 64bbdfc78bda6165ef3c8fcced47374a 364 Pfam PF00953 Glycosyl transferase family 4 76 232 9.2E-27 T 15-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 NJ56_04425 999546cd14dc59f1399f3f3144014ea5 71 Pfam PF06406 StbA protein 3 60 9.9E-12 T 15-10-2018 IPR009440 Plasmid segregation protein ParM/StbA NJ56_04425 999546cd14dc59f1399f3f3144014ea5 71 Gene3D G3DSA:3.30.420.40 1 46 2.6E-7 T 15-10-2018 NJ56_09355 9fdb41075193e5ad2f7e64c3c1ef3ae4 262 SUPERFAMILY SSF52540 6 234 3.33E-60 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09355 9fdb41075193e5ad2f7e64c3c1ef3ae4 262 Pfam PF00005 ABC transporter 24 172 9.7E-30 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_09355 9fdb41075193e5ad2f7e64c3c1ef3ae4 262 Gene3D G3DSA:3.40.50.300 4 260 4.5E-63 T 15-10-2018 NJ56_09355 9fdb41075193e5ad2f7e64c3c1ef3ae4 262 SMART SM00382 31 220 1.3E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_09820 7cdb45b805a29e614cccad194b6b2680 227 Gene3D G3DSA:2.40.50.540 137 226 2.2E-29 T 15-10-2018 IPR038139 NlpE, C-terminal domain superfamily NJ56_09820 7cdb45b805a29e614cccad194b6b2680 227 Pfam PF17185 NlpE C-terminal OB domain 136 224 2.7E-33 T 15-10-2018 IPR033450 NlpE, C-terminal OB domain NJ56_09820 7cdb45b805a29e614cccad194b6b2680 227 Pfam PF04170 NlpE N-terminal domain 38 122 1.4E-25 T 15-10-2018 IPR007298 Copper resistance lipoprotein NlpE NJ56_09820 7cdb45b805a29e614cccad194b6b2680 227 Gene3D G3DSA:2.40.128.300 20 111 1.1E-27 T 15-10-2018 NJ56_17205 4a80e4854a3d0f7b5d25565474266267 455 SMART SM00116 342 389 1.0E-4 T 15-10-2018 IPR000644 CBS domain NJ56_17205 4a80e4854a3d0f7b5d25565474266267 455 SMART SM00116 406 451 4.2 T 15-10-2018 IPR000644 CBS domain NJ56_17205 4a80e4854a3d0f7b5d25565474266267 455 Gene3D G3DSA:3.40.50.1100 40 153 2.6E-109 T 15-10-2018 NJ56_17205 4a80e4854a3d0f7b5d25565474266267 455 SUPERFAMILY SSF53686 5 320 8.25E-95 T 15-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NJ56_17205 4a80e4854a3d0f7b5d25565474266267 455 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 15-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 NJ56_17205 4a80e4854a3d0f7b5d25565474266267 455 Pfam PF00571 CBS domain 401 449 1.1E-4 T 15-10-2018 IPR000644 CBS domain NJ56_17205 4a80e4854a3d0f7b5d25565474266267 455 Pfam PF00571 CBS domain 344 388 8.9E-7 T 15-10-2018 IPR000644 CBS domain NJ56_17205 4a80e4854a3d0f7b5d25565474266267 455 Gene3D G3DSA:3.40.50.1100 9 309 2.6E-109 T 15-10-2018 NJ56_17205 4a80e4854a3d0f7b5d25565474266267 455 SUPERFAMILY SSF54631 341 450 6.06E-20 T 15-10-2018 NJ56_17205 4a80e4854a3d0f7b5d25565474266267 455 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 301 1.0E-64 T 15-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme NJ56_17205 4a80e4854a3d0f7b5d25565474266267 455 Gene3D G3DSA:3.10.580.10 335 454 9.6E-20 T 15-10-2018 NJ56_11130 669f2731fb3b19a6f49733a767257420 364 Gene3D G3DSA:3.40.50.300 2 267 2.0E-81 T 15-10-2018 NJ56_11130 669f2731fb3b19a6f49733a767257420 364 SUPERFAMILY SSF50331 239 323 2.38E-9 T 15-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal NJ56_11130 669f2731fb3b19a6f49733a767257420 364 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_11130 669f2731fb3b19a6f49733a767257420 364 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 2.9E-125 T 15-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 NJ56_11130 669f2731fb3b19a6f49733a767257420 364 Pfam PF00005 ABC transporter 18 164 8.7E-37 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_11130 669f2731fb3b19a6f49733a767257420 364 SUPERFAMILY SSF52540 3 244 8.52E-86 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_11130 669f2731fb3b19a6f49733a767257420 364 SMART SM00382 27 214 2.8E-18 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_12520 5d4f5b616c7fc0ad70f50cc709ff6df3 227 Gene3D G3DSA:3.10.450.230 82 225 2.3E-37 T 15-10-2018 NJ56_12520 5d4f5b616c7fc0ad70f50cc709ff6df3 227 PIRSF PIRSF003299 1 225 1.6E-39 T 15-10-2018 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 NJ56_12520 5d4f5b616c7fc0ad70f50cc709ff6df3 227 SUPERFAMILY SSF54427 84 223 7.01E-35 T 15-10-2018 IPR032710 NTF2-like domain superfamily NJ56_12520 5d4f5b616c7fc0ad70f50cc709ff6df3 227 Pfam PF04335 VirB8 protein 11 223 1.5E-52 T 15-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 NJ56_07845 f7e9c046705d943a086fd83954eca7e1 169 Gene3D G3DSA:1.10.10.10 1 89 1.5E-35 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_07845 f7e9c046705d943a086fd83954eca7e1 169 Pfam PF01475 Ferric uptake regulator family 20 138 4.8E-14 T 15-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 NJ56_07845 f7e9c046705d943a086fd83954eca7e1 169 Gene3D G3DSA:3.30.1490.190 90 152 3.4E-14 T 15-10-2018 NJ56_07845 f7e9c046705d943a086fd83954eca7e1 169 SUPERFAMILY SSF46785 12 144 2.48E-33 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_09635 8d95768a87ce4633a0a32a4924fea0c1 454 Pfam PF03641 Possible lysine decarboxylase 190 329 7.5E-33 T 15-10-2018 IPR031100 LOG family NJ56_09635 8d95768a87ce4633a0a32a4924fea0c1 454 Gene3D G3DSA:3.30.1850.10 1 119 7.2E-52 T 15-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 NJ56_09635 8d95768a87ce4633a0a32a4924fea0c1 454 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 1.4E-46 T 15-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 NJ56_09635 8d95768a87ce4633a0a32a4924fea0c1 454 Pfam PF11892 Domain of unknown function (DUF3412) 333 452 4.4E-57 T 15-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 NJ56_09635 8d95768a87ce4633a0a32a4924fea0c1 454 SUPERFAMILY SSF102405 119 330 2.44E-40 T 15-10-2018 NJ56_09635 8d95768a87ce4633a0a32a4924fea0c1 454 Gene3D G3DSA:3.40.50.450 120 452 4.6E-121 T 15-10-2018 NJ56_05735 98abb902305b8045d2b03a9d7f7f621a 281 ProSitePatterns PS00221 MIP family signature. 68 76 - T 15-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 NJ56_05735 98abb902305b8045d2b03a9d7f7f621a 281 Pfam PF00230 Major intrinsic protein 5 253 1.2E-72 T 15-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 NJ56_05735 98abb902305b8045d2b03a9d7f7f621a 281 TIGRFAM TIGR00861 MIP: MIP family channel proteins 15 253 9.7E-74 T 15-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 NJ56_05735 98abb902305b8045d2b03a9d7f7f621a 281 PRINTS PR00783 Major intrinsic protein family signature 87 106 8.5E-53 T 15-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 NJ56_05735 98abb902305b8045d2b03a9d7f7f621a 281 PRINTS PR00783 Major intrinsic protein family signature 186 208 8.5E-53 T 15-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 NJ56_05735 98abb902305b8045d2b03a9d7f7f621a 281 PRINTS PR00783 Major intrinsic protein family signature 11 30 8.5E-53 T 15-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 NJ56_05735 98abb902305b8045d2b03a9d7f7f621a 281 PRINTS PR00783 Major intrinsic protein family signature 50 74 8.5E-53 T 15-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 NJ56_05735 98abb902305b8045d2b03a9d7f7f621a 281 PRINTS PR00783 Major intrinsic protein family signature 153 171 8.5E-53 T 15-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 NJ56_05735 98abb902305b8045d2b03a9d7f7f621a 281 PRINTS PR00783 Major intrinsic protein family signature 236 256 8.5E-53 T 15-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 NJ56_05735 98abb902305b8045d2b03a9d7f7f621a 281 Gene3D G3DSA:1.20.1080.10 4 261 4.4E-109 T 15-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 NJ56_05735 98abb902305b8045d2b03a9d7f7f621a 281 SUPERFAMILY SSF81338 11 259 6.54E-81 T 15-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 NJ56_03920 a8225d6672291b4b04b262f29df9b1a8 176 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 15-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 NJ56_03920 a8225d6672291b4b04b262f29df9b1a8 176 SUPERFAMILY SSF50324 3 173 9.03E-67 T 15-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 NJ56_03920 a8225d6672291b4b04b262f29df9b1a8 176 Pfam PF00719 Inorganic pyrophosphatase 18 172 4.8E-55 T 15-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 NJ56_03920 a8225d6672291b4b04b262f29df9b1a8 176 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.726 T 15-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 NJ56_03920 a8225d6672291b4b04b262f29df9b1a8 176 Gene3D G3DSA:3.90.80.10 2 176 2.8E-70 T 15-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 NJ56_12905 e56e52c3b3234d180dd0c8f3363391f6 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 1.9E-43 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_12905 e56e52c3b3234d180dd0c8f3363391f6 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 1.9E-43 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_12905 e56e52c3b3234d180dd0c8f3363391f6 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 1.9E-43 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_12905 e56e52c3b3234d180dd0c8f3363391f6 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 1.9E-43 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_12905 e56e52c3b3234d180dd0c8f3363391f6 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 1.9E-43 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_12905 e56e52c3b3234d180dd0c8f3363391f6 383 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 353 1.6E-133 T 15-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 NJ56_12905 e56e52c3b3234d180dd0c8f3363391f6 383 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 347 2.8E-127 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_12905 e56e52c3b3234d180dd0c8f3363391f6 383 SUPERFAMILY SSF160544 251 355 8.37E-42 T 15-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal NJ56_12905 e56e52c3b3234d180dd0c8f3363391f6 383 Gene3D G3DSA:3.40.1690.10 217 359 9.4E-61 T 15-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal NJ56_13975 a45bdf7a77cb90b74927882121557540 85 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 48 1.7E-26 T 15-10-2018 IPR005371 Uncharacterised protein family UPF0181 NJ56_13975 a45bdf7a77cb90b74927882121557540 85 Hamap MF_00507 UPF0181 protein YoaH [yoaH]. 1 58 19.671 T 15-10-2018 IPR005371 Uncharacterised protein family UPF0181 NJ56_13975 a45bdf7a77cb90b74927882121557540 85 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 1 46 6.0E-17 T 15-10-2018 IPR005371 Uncharacterised protein family UPF0181 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 PRINTS PR00834 HtrA/DegQ protease family signature 125 145 3.8E-58 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 PRINTS PR00834 HtrA/DegQ protease family signature 104 116 3.8E-58 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 PRINTS PR00834 HtrA/DegQ protease family signature 223 240 3.8E-58 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 PRINTS PR00834 HtrA/DegQ protease family signature 166 190 3.8E-58 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 PRINTS PR00834 HtrA/DegQ protease family signature 201 218 3.8E-58 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 PRINTS PR00834 HtrA/DegQ protease family signature 309 321 3.8E-58 T 15-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 SUPERFAMILY SSF50156 227 352 3.94E-24 T 15-10-2018 IPR036034 PDZ superfamily GO:0005515 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 264 346 2.3E-16 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 379 445 2.7E-10 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 SUPERFAMILY SSF50494 40 265 4.92E-65 T 15-10-2018 IPR009003 Peptidase S1, PA clan NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 SUPERFAMILY SSF50156 383 456 8.28E-16 T 15-10-2018 IPR036034 PDZ superfamily GO:0005515 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 Pfam PF13365 Trypsin-like peptidase domain 94 230 4.7E-33 T 15-10-2018 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 SMART SM00228 269 351 1.1E-13 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 SMART SM00228 371 449 6.5E-10 T 15-10-2018 IPR001478 PDZ domain GO:0005515 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 455 8.9E-160 T 15-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 Gene3D G3DSA:2.30.42.10 367 457 3.0E-26 T 15-10-2018 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 Gene3D G3DSA:2.40.10.120 39 263 2.0E-86 T 15-10-2018 NJ56_08235 5481fc83a74d8b1a74fc390f4a8251ad 457 Gene3D G3DSA:2.30.42.10 267 366 2.7E-29 T 15-10-2018 NJ56_02350 b2aa4dc727d6823c97f65b5acf38504a 347 Gene3D G3DSA:3.40.630.10 35 347 2.0E-43 T 15-10-2018 NJ56_02350 b2aa4dc727d6823c97f65b5acf38504a 347 Pfam PF04389 Peptidase family M28 105 325 2.4E-30 T 15-10-2018 IPR007484 Peptidase M28 NJ56_02350 b2aa4dc727d6823c97f65b5acf38504a 347 SUPERFAMILY SSF53187 46 318 7.65E-36 T 15-10-2018 NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 Pfam PF02926 THUMP domain 29 161 6.7E-22 T 15-10-2018 IPR004114 THUMP domain GO:0003723 NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 SUPERFAMILY SSF52402 174 372 2.87E-42 T 15-10-2018 NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 369 8.1E-79 T 15-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 373 2.0E-131 T 15-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 SUPERFAMILY SSF52821 390 481 1.22E-11 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 383 482 1.8E-42 T 15-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 SMART SM00981 75 165 4.4E-21 T 15-10-2018 IPR004114 THUMP domain GO:0003723 NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 SUPERFAMILY SSF143437 1 173 8.55E-47 T 15-10-2018 NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 Gene3D G3DSA:3.40.50.620 175 396 1.6E-53 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 Gene3D G3DSA:3.40.250.10 397 482 7.6E-9 T 15-10-2018 IPR036873 Rhodanese-like domain superfamily NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 482 227.916 T 15-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 NJ56_01480 c327d4b5ccd21128486a7f3edebf7eec 482 Gene3D G3DSA:3.30.2130.30 1 174 3.9E-34 T 15-10-2018 NJ56_03235 9fa771c17bce57da0a09e4cba073461d 356 Pfam PF02733 Dak1 domain 17 351 5.7E-126 T 15-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 NJ56_03235 9fa771c17bce57da0a09e4cba073461d 356 Gene3D G3DSA:3.40.50.10440 11 183 1.6E-63 T 15-10-2018 NJ56_03235 9fa771c17bce57da0a09e4cba073461d 356 SUPERFAMILY SSF82549 11 355 3.14E-125 T 15-10-2018 NJ56_03235 9fa771c17bce57da0a09e4cba073461d 356 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 352 4.6E-147 T 15-10-2018 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 KEGG: 00561+2.7.1.121 NJ56_03235 9fa771c17bce57da0a09e4cba073461d 356 Gene3D G3DSA:3.30.1180.20 184 356 4.0E-63 T 15-10-2018 NJ56_06505 9739dbaae4f5ee65b231cc3e2a3186cd 173 Pfam PF05229 Spore Coat Protein U domain 31 170 2.4E-24 T 15-10-2018 IPR007893 Spore coat protein U NJ56_06505 9739dbaae4f5ee65b231cc3e2a3186cd 173 SMART SM00972 115 170 7.1E-6 T 15-10-2018 IPR007893 Spore coat protein U NJ56_18275 f482993409101c4a85c90be332ab7988 237 Gene3D G3DSA:1.10.10.10 1 142 1.1E-41 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_18275 f482993409101c4a85c90be332ab7988 237 SUPERFAMILY SSF46785 134 225 1.63E-17 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_18275 f482993409101c4a85c90be332ab7988 237 Pfam PF01051 Initiator Replication protein 13 222 1.5E-43 T 15-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 NJ56_18275 f482993409101c4a85c90be332ab7988 237 SUPERFAMILY SSF46785 11 133 1.36E-27 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_18275 f482993409101c4a85c90be332ab7988 237 Gene3D G3DSA:1.10.10.10 145 231 5.2E-17 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_17200 6dcffc65f09803b4f1a4a6f003b20116 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 74 85 1.5E-17 T 15-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NJ56_17200 6dcffc65f09803b4f1a4a6f003b20116 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 133 150 1.5E-17 T 15-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NJ56_17200 6dcffc65f09803b4f1a4a6f003b20116 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 160 173 1.5E-17 T 15-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NJ56_17200 6dcffc65f09803b4f1a4a6f003b20116 409 Gene3D G3DSA:3.40.710.10 35 293 3.6E-90 T 15-10-2018 NJ56_17200 6dcffc65f09803b4f1a4a6f003b20116 409 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 44 274 8.8E-97 T 15-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 NJ56_17200 6dcffc65f09803b4f1a4a6f003b20116 409 SMART SM00936 294 385 4.7E-28 T 15-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_17200 6dcffc65f09803b4f1a4a6f003b20116 409 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 294 385 4.9E-20 T 15-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_17200 6dcffc65f09803b4f1a4a6f003b20116 409 SUPERFAMILY SSF56601 18 294 5.51E-80 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_17200 6dcffc65f09803b4f1a4a6f003b20116 409 Gene3D G3DSA:2.60.410.10 294 385 2.1E-24 T 15-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_17200 6dcffc65f09803b4f1a4a6f003b20116 409 SUPERFAMILY SSF69189 294 387 6.67E-23 T 15-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 NJ56_00465 f5c35e42dbd10ad05d655a45e49d965c 142 SUPERFAMILY SSF103481 41 141 1.7E-13 T 15-10-2018 NJ56_00465 f5c35e42dbd10ad05d655a45e49d965c 142 Pfam PF00892 EamA-like transporter family 4 140 5.6E-21 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_14095 caffbba48c36fde43747f46d8f6e25b8 132 Pfam PF04266 ASCH domain 20 128 1.5E-21 T 15-10-2018 IPR007374 ASCH domain NJ56_14095 caffbba48c36fde43747f46d8f6e25b8 132 SUPERFAMILY SSF88697 4 128 1.66E-43 T 15-10-2018 IPR015947 PUA-like superfamily NJ56_14095 caffbba48c36fde43747f46d8f6e25b8 132 Gene3D G3DSA:3.10.400.10 1 131 9.3E-41 T 15-10-2018 NJ56_14095 caffbba48c36fde43747f46d8f6e25b8 132 SMART SM01022 15 128 9.8E-35 T 15-10-2018 IPR007374 ASCH domain NJ56_14095 caffbba48c36fde43747f46d8f6e25b8 132 PIRSF PIRSF021320 1 131 5.4E-41 T 15-10-2018 IPR009326 Protein of unknown function DUF984 NJ56_01700 ff43ac750484a346727d3c82ba33ce07 152 Gene3D G3DSA:3.40.50.2020 1 152 2.5E-43 T 15-10-2018 NJ56_01700 ff43ac750484a346727d3c82ba33ce07 152 SUPERFAMILY SSF53271 4 146 1.84E-31 T 15-10-2018 IPR029057 Phosphoribosyltransferase-like NJ56_01700 ff43ac750484a346727d3c82ba33ce07 152 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 152 40.851 T 15-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 NJ56_01700 ff43ac750484a346727d3c82ba33ce07 152 Pfam PF00156 Phosphoribosyl transferase domain 13 145 1.6E-15 T 15-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 NJ56_08435 3a18c71e2f18c68341ce8213b27d5783 329 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 9.0E-26 T 15-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 NJ56_08435 3a18c71e2f18c68341ce8213b27d5783 329 Gene3D G3DSA:3.30.360.10 135 325 3.0E-53 T 15-10-2018 NJ56_08435 3a18c71e2f18c68341ce8213b27d5783 329 SUPERFAMILY SSF51735 2 152 9.2E-42 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_08435 3a18c71e2f18c68341ce8213b27d5783 329 SUPERFAMILY SSF55347 127 292 1.37E-23 T 15-10-2018 NJ56_08435 3a18c71e2f18c68341ce8213b27d5783 329 Gene3D G3DSA:3.40.50.720 1 134 2.2E-34 T 15-10-2018 NJ56_13185 8c8e9d881456cf19801a5c0aad49ce77 72 Pfam PF00589 Phage integrase family 4 60 5.4E-14 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_13185 8c8e9d881456cf19801a5c0aad49ce77 72 SUPERFAMILY SSF56349 5 71 1.71E-15 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_13185 8c8e9d881456cf19801a5c0aad49ce77 72 Gene3D G3DSA:1.10.443.10 2 72 1.6E-15 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_18045 6119906d4a76f45df8de3742c30e44f9 381 SMART SM00470 62 155 0.006 T 15-10-2018 IPR003115 ParB/Sulfiredoxin NJ56_18045 6119906d4a76f45df8de3742c30e44f9 381 Gene3D G3DSA:3.90.1530.30 76 137 8.1E-6 T 15-10-2018 NJ56_18045 6119906d4a76f45df8de3742c30e44f9 381 Gene3D G3DSA:1.10.10.2830 142 257 3.9E-11 T 15-10-2018 NJ56_18045 6119906d4a76f45df8de3742c30e44f9 381 Pfam PF08535 KorB domain 177 262 3.0E-14 T 15-10-2018 IPR013741 Repressor KorB domain NJ56_18045 6119906d4a76f45df8de3742c30e44f9 381 SUPERFAMILY SSF110849 74 156 1.06E-9 T 15-10-2018 IPR036086 ParB/Sulfiredoxin superfamily NJ56_18045 6119906d4a76f45df8de3742c30e44f9 381 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 70 241 1.1E-18 T 15-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 NJ56_18045 6119906d4a76f45df8de3742c30e44f9 381 SUPERFAMILY SSF109709 149 258 4.97E-14 T 15-10-2018 NJ56_02340 5757fcc792273350fc8effcfd59c6cd1 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 2.1E-65 T 15-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 NJ56_02340 5757fcc792273350fc8effcfd59c6cd1 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 58.623 T 15-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 NJ56_02340 5757fcc792273350fc8effcfd59c6cd1 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 2.7E-166 T 15-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 NJ56_02340 5757fcc792273350fc8effcfd59c6cd1 302 Gene3D G3DSA:3.40.50.620 7 212 1.1E-64 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_02340 5757fcc792273350fc8effcfd59c6cd1 302 PIRSF PIRSF002936 1 302 6.1E-155 T 15-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 NJ56_02340 5757fcc792273350fc8effcfd59c6cd1 302 SUPERFAMILY SSF52402 6 209 1.57E-74 T 15-10-2018 NJ56_04360 ca08310916b5851255974017ce217d45 186 SUPERFAMILY SSF53041 1 138 5.1E-40 T 15-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 NJ56_04360 ca08310916b5851255974017ce217d45 186 Gene3D G3DSA:1.20.5.40 99 138 4.6E-21 T 15-10-2018 NJ56_04360 ca08310916b5851255974017ce217d45 186 Pfam PF00239 Resolvase, N terminal domain 4 138 3.5E-37 T 15-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NJ56_04360 ca08310916b5851255974017ce217d45 186 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 15-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 NJ56_04360 ca08310916b5851255974017ce217d45 186 SMART SM00857 3 139 7.8E-45 T 15-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NJ56_04360 ca08310916b5851255974017ce217d45 186 Gene3D G3DSA:3.40.50.1390 2 95 7.0E-18 T 15-10-2018 NJ56_12430 dbce059b4227187d2c168cec73cb1a9f 547 Gene3D G3DSA:3.40.1090.10 222 542 6.3E-61 T 15-10-2018 NJ56_12430 dbce059b4227187d2c168cec73cb1a9f 547 SUPERFAMILY SSF52151 231 527 1.57E-46 T 15-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase NJ56_12430 dbce059b4227187d2c168cec73cb1a9f 547 Pfam PF01734 Patatin-like phospholipase 236 423 2.9E-24 T 15-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 NJ56_03685 5f16ccbebe0859806607ca9277cb368f 249 Pfam PF12706 Beta-lactamase superfamily domain 65 220 2.0E-20 T 15-10-2018 IPR001279 Metallo-beta-lactamase NJ56_03685 5f16ccbebe0859806607ca9277cb368f 249 Gene3D G3DSA:3.60.15.10 1 249 2.0E-70 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_03685 5f16ccbebe0859806607ca9277cb368f 249 TIGRFAM TIGR03307 PhnP: phosphonate metabolism protein PhnP 1 247 1.5E-118 T 15-10-2018 IPR017693 Phosphonate metabolism protein PhnP GO:0008081|GO:0019700 KEGG: 00440+3.1.4.55|MetaCyc: PWY-7805|MetaCyc: PWY-7807 NJ56_03685 5f16ccbebe0859806607ca9277cb368f 249 SUPERFAMILY SSF56281 1 249 4.6E-39 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_08190 d0930b7d8c1b6d1490ff803e147308c8 325 Gene3D G3DSA:1.20.58.1130 8 207 6.9E-87 T 15-10-2018 NJ56_08190 d0930b7d8c1b6d1490ff803e147308c8 325 Pfam PF01699 Sodium/calcium exchanger protein 177 317 2.7E-29 T 15-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 NJ56_08190 d0930b7d8c1b6d1490ff803e147308c8 325 Pfam PF01699 Sodium/calcium exchanger protein 4 143 7.4E-29 T 15-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 NJ56_08190 d0930b7d8c1b6d1490ff803e147308c8 325 Gene3D G3DSA:1.20.1420.30 35 309 6.9E-87 T 15-10-2018 NJ56_08190 d0930b7d8c1b6d1490ff803e147308c8 325 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 2 312 3.2E-90 T 15-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 NJ56_09570 d04f9ab8e44d20d29a551817e99b3c7e 416 SUPERFAMILY SSF53187 188 407 1.48E-54 T 15-10-2018 NJ56_09570 d04f9ab8e44d20d29a551817e99b3c7e 416 Gene3D G3DSA:3.40.630.40 176 416 3.2E-91 T 15-10-2018 NJ56_09570 d04f9ab8e44d20d29a551817e99b3c7e 416 Gene3D G3DSA:2.60.40.3500 25 145 2.1E-35 T 15-10-2018 NJ56_09570 d04f9ab8e44d20d29a551817e99b3c7e 416 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 190 404 3.4E-51 T 15-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 NJ56_09570 d04f9ab8e44d20d29a551817e99b3c7e 416 SMART SM00646 250 404 9.0E-67 T 15-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 NJ56_09570 d04f9ab8e44d20d29a551817e99b3c7e 416 Pfam PF11741 AMIN domain 39 142 3.1E-28 T 15-10-2018 IPR021731 AMIN domain NJ56_07300 e473111d2dad189866bc5777ba688be3 272 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 34 153 3.7E-37 T 15-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 NJ56_07300 e473111d2dad189866bc5777ba688be3 272 Gene3D G3DSA:3.10.50.40 144 258 4.0E-42 T 15-10-2018 NJ56_07300 e473111d2dad189866bc5777ba688be3 272 Gene3D G3DSA:1.10.287.460 26 143 1.7E-30 T 15-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 NJ56_07300 e473111d2dad189866bc5777ba688be3 272 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 162 247 1.4E-29 T 15-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain NJ56_07300 e473111d2dad189866bc5777ba688be3 272 SUPERFAMILY SSF54534 43 250 2.16E-63 T 15-10-2018 NJ56_16580 796026e6b6e4a5d571467d65932f14ee 507 SUPERFAMILY SSF56219 275 492 1.7E-12 T 15-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily NJ56_16580 796026e6b6e4a5d571467d65932f14ee 507 Gene3D G3DSA:3.60.10.10 264 496 4.9E-13 T 15-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily NJ56_09700 9776902fe5bb5956fea0d52b8dae1e66 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 9.6E-79 T 15-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 NJ56_09700 9776902fe5bb5956fea0d52b8dae1e66 185 Gene3D G3DSA:1.10.132.20 1 34 3.5E-6 T 15-10-2018 NJ56_09700 9776902fe5bb5956fea0d52b8dae1e66 185 Gene3D G3DSA:3.30.1360.40 35 100 5.6E-31 T 15-10-2018 NJ56_09700 9776902fe5bb5956fea0d52b8dae1e66 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.514 T 15-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 NJ56_09700 9776902fe5bb5956fea0d52b8dae1e66 185 SUPERFAMILY SSF55194 2 184 2.75E-71 T 15-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 NJ56_09700 9776902fe5bb5956fea0d52b8dae1e66 185 Gene3D G3DSA:1.10.132.20 101 185 9.4E-28 T 15-10-2018 NJ56_09700 9776902fe5bb5956fea0d52b8dae1e66 185 Pfam PF01765 Ribosome recycling factor 20 183 5.3E-64 T 15-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 NJ56_10905 c65d7f5db82736155a55e8441eeccf51 150 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 5 150 18.691 T 15-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame NJ56_10905 c65d7f5db82736155a55e8441eeccf51 150 Pfam PF04284 Protein of unknown function (DUF441) 9 147 1.8E-46 T 15-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame NJ56_10905 c65d7f5db82736155a55e8441eeccf51 150 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 21 132 2.0E-25 T 15-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame NJ56_08085 d548d4bcf2c4fffa835aba84c3073fc3 128 SUPERFAMILY SSF47175 23 128 8.95E-29 T 15-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 NJ56_08085 d548d4bcf2c4fffa835aba84c3073fc3 128 Pfam PF07361 Cytochrome b562 24 128 1.9E-28 T 15-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 NJ56_08085 d548d4bcf2c4fffa835aba84c3073fc3 128 Gene3D G3DSA:1.20.120.10 18 128 2.0E-40 T 15-10-2018 NJ56_08085 d548d4bcf2c4fffa835aba84c3073fc3 128 PIRSF PIRSF000029 1 128 1.1E-47 T 15-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 NJ56_05825 b00b1ad53082bd09754b34281c94e1fb 82 Pfam PF00462 Glutaredoxin 4 63 1.1E-23 T 15-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 NJ56_05825 b00b1ad53082bd09754b34281c94e1fb 82 Gene3D G3DSA:3.40.30.10 1 82 2.0E-27 T 15-10-2018 NJ56_05825 b00b1ad53082bd09754b34281c94e1fb 82 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 4.8E-35 T 15-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 NJ56_05825 b00b1ad53082bd09754b34281c94e1fb 82 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 15-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 NJ56_05825 b00b1ad53082bd09754b34281c94e1fb 82 SUPERFAMILY SSF52833 1 82 1.55E-27 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_05825 b00b1ad53082bd09754b34281c94e1fb 82 PRINTS PR00160 Glutaredoxin signature 4 22 1.2E-17 T 15-10-2018 IPR014025 Glutaredoxin subgroup NJ56_05825 b00b1ad53082bd09754b34281c94e1fb 82 PRINTS PR00160 Glutaredoxin signature 60 73 1.2E-17 T 15-10-2018 IPR014025 Glutaredoxin subgroup NJ56_05825 b00b1ad53082bd09754b34281c94e1fb 82 PRINTS PR00160 Glutaredoxin signature 46 59 1.2E-17 T 15-10-2018 IPR014025 Glutaredoxin subgroup NJ56_00625 3942f37dbfdfecb4706460f4b8906078 246 SUPERFAMILY SSF161098 24 223 2.62E-37 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_00625 3942f37dbfdfecb4706460f4b8906078 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 24 132 2.4E-15 T 15-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 NJ56_00625 3942f37dbfdfecb4706460f4b8906078 246 Gene3D G3DSA:1.10.3720.10 18 238 5.2E-44 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_00625 3942f37dbfdfecb4706460f4b8906078 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 45 237 7.8E-25 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_02990 10db59fd6a6aa2026465a30a9d0fb736 394 Gene3D G3DSA:1.20.1530.10 2 388 3.7E-155 T 15-10-2018 IPR023171 Na/H antiporter domain superfamily NJ56_02990 10db59fd6a6aa2026465a30a9d0fb736 394 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 387 23.671 T 15-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 NJ56_02990 10db59fd6a6aa2026465a30a9d0fb736 394 Pfam PF06965 Na+/H+ antiporter 1 7 380 1.2E-150 T 15-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 NJ56_02990 10db59fd6a6aa2026465a30a9d0fb736 394 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 380 6.2E-173 T 15-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 NJ56_13685 430033782838f0f2b53f9116e28d8754 105 Gene3D G3DSA:3.40.50.2300 1 105 2.1E-33 T 15-10-2018 NJ56_13685 430033782838f0f2b53f9116e28d8754 105 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 1.1E-16 T 15-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 NJ56_13685 430033782838f0f2b53f9116e28d8754 105 SUPERFAMILY SSF52794 4 103 1.54E-31 T 15-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 NJ56_09625 3605380c28287d6003d882aa6514f801 367 Gene3D G3DSA:3.30.2300.20 80 175 5.4E-38 T 15-10-2018 NJ56_09625 3605380c28287d6003d882aa6514f801 367 PIRSF PIRSF028774 1 360 4.8E-191 T 15-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 NJ56_09625 3605380c28287d6003d882aa6514f801 367 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 355 86.115 T 15-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 NJ56_09625 3605380c28287d6003d882aa6514f801 367 Gene3D G3DSA:3.40.50.150 176 357 7.2E-57 T 15-10-2018 NJ56_09625 3605380c28287d6003d882aa6514f801 367 Gene3D G3DSA:3.30.70.2810 1 79 3.2E-35 T 15-10-2018 NJ56_09625 3605380c28287d6003d882aa6514f801 367 SUPERFAMILY SSF53335 184 293 1.52E-11 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_09625 3605380c28287d6003d882aa6514f801 367 Pfam PF01728 FtsJ-like methyltransferase 186 262 7.6E-8 T 15-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 NJ56_16305 b641825374f8f363b1374e68dae10488 109 Pfam PF02974 Protease inhibitor Inh 8 106 5.2E-22 T 15-10-2018 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 NJ56_16305 b641825374f8f363b1374e68dae10488 109 Gene3D G3DSA:2.40.128.10 3 109 7.7E-34 T 15-10-2018 NJ56_16305 b641825374f8f363b1374e68dae10488 109 ProDom PD015804 INHIBITOR PROTEASE METALLOPROTEASE PROTEINASE PRECURSOR SIGNAL PERIPLASMIC METALLOENZYME ALKALINE PRTA-SPECIFIC 12 97 8.0E-46 T 15-10-2018 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 NJ56_16305 b641825374f8f363b1374e68dae10488 109 SUPERFAMILY SSF50882 3 107 3.66E-28 T 15-10-2018 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 NJ56_16305 b641825374f8f363b1374e68dae10488 109 PRINTS PR01274 Metalloprotease inhibitor signature 46 57 1.8E-11 T 15-10-2018 IPR022815 Protease inhibitor I38 NJ56_16305 b641825374f8f363b1374e68dae10488 109 PRINTS PR01274 Metalloprotease inhibitor signature 3 19 1.8E-11 T 15-10-2018 IPR022815 Protease inhibitor I38 NJ56_16305 b641825374f8f363b1374e68dae10488 109 PRINTS PR01274 Metalloprotease inhibitor signature 68 81 1.8E-11 T 15-10-2018 IPR022815 Protease inhibitor I38 NJ56_10840 a81f1023452f02c48927318a97ae7645 347 SUPERFAMILY SSF55326 7 170 6.58E-53 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_10840 a81f1023452f02c48927318a97ae7645 347 Pfam PF00586 AIR synthase related protein, N-terminal domain 64 164 2.6E-16 T 15-10-2018 IPR016188 PurM-like, N-terminal domain NJ56_10840 a81f1023452f02c48927318a97ae7645 347 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 345 47.253 T 15-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_10840 a81f1023452f02c48927318a97ae7645 347 SUPERFAMILY SSF56042 171 339 1.21E-62 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_10840 a81f1023452f02c48927318a97ae7645 347 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 7 334 4.1E-153 T 15-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 NJ56_10840 a81f1023452f02c48927318a97ae7645 347 Gene3D G3DSA:3.30.1330.10 6 170 6.9E-69 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_10840 a81f1023452f02c48927318a97ae7645 347 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 335 3.0E-37 T 15-10-2018 IPR010918 PurM-like, C-terminal domain NJ56_10840 a81f1023452f02c48927318a97ae7645 347 Gene3D G3DSA:3.90.650.10 171 345 1.3E-70 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_12895 28eb989fd1ec42b0ef98ce8aca7637c3 204 SMART SM00421 139 196 1.2E-8 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_12895 28eb989fd1ec42b0ef98ce8aca7637c3 204 SUPERFAMILY SSF46894 137 197 3.74E-12 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_12895 28eb989fd1ec42b0ef98ce8aca7637c3 204 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 195 2.1E-9 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_12895 28eb989fd1ec42b0ef98ce8aca7637c3 204 Gene3D G3DSA:1.10.10.10 101 200 1.2E-11 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_13490 eba4dad7eb283a481d0f10d2cab0621f 65 ProDom PD057914 C0939 STY4639 GPA GP33 PRECURSOR FELS-2 5'REGION STY3665 SIGNAL PHAGE-RELATED 11 62 4.0E-5 T 15-10-2018 IPR020126 Protein of unknown function DUF2732 NJ56_13490 eba4dad7eb283a481d0f10d2cab0621f 65 Pfam PF10809 Protein of unknown function (DUF2732) 10 63 9.9E-10 T 15-10-2018 IPR020126 Protein of unknown function DUF2732 NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 SUPERFAMILY SSF81624 2 138 2.35E-43 T 15-10-2018 IPR035937 MutM-like, N-terminal NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 SUPERFAMILY SSF46946 130 222 1.24E-30 T 15-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 ProSitePatterns PS01242 Zinc finger FPG-type signature. 244 268 - T 15-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 Pfam PF06827 Zinc finger found in FPG and IleRS 241 269 2.1E-11 T 15-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 SUPERFAMILY SSF57716 217 268 4.56E-17 T 15-10-2018 NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 268 1.5E-101 T 15-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 129 218 5.6E-28 T 15-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 SMART SM01232 129 221 9.5E-50 T 15-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 Gene3D G3DSA:3.20.190.10 2 128 7.4E-43 T 15-10-2018 IPR035937 MutM-like, N-terminal NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 Gene3D G3DSA:1.10.8.50 139 269 4.5E-48 T 15-10-2018 NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 269 43.839 T 15-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 SMART SM00898 2 115 1.1E-53 T 15-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 NJ56_05890 2c23f4ba9e0e378db787a5881fbed908 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 2.2E-30 T 15-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 NJ56_08155 833a141e16be80523ce874675c64280d 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 93 1.1E-28 T 15-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 NJ56_08155 833a141e16be80523ce874675c64280d 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 2.6E-35 T 15-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 NJ56_08155 833a141e16be80523ce874675c64280d 95 SUPERFAMILY SSF69754 2 95 2.75E-35 T 15-10-2018 IPR036567 Ribosome hibernation promotion factor-like NJ56_08155 833a141e16be80523ce874675c64280d 95 Gene3D G3DSA:3.30.160.100 1 95 2.3E-38 T 15-10-2018 IPR036567 Ribosome hibernation promotion factor-like NJ56_12410 5fc57675bb1abf3f52e21f0f6f17a69b 352 Pfam PF04632 Fusaric acid resistance protein family 20 248 1.2E-16 T 15-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 NJ56_09285 80f3ea5fa20b9789aa9124a9bd8bc95a 959 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 958 25.329 T 15-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 NJ56_09285 80f3ea5fa20b9789aa9124a9bd8bc95a 959 SUPERFAMILY SSF53383 17 441 2.1E-95 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_09285 80f3ea5fa20b9789aa9124a9bd8bc95a 959 SUPERFAMILY SSF53383 462 953 1.37E-97 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_09285 80f3ea5fa20b9789aa9124a9bd8bc95a 959 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 952 0.0 T 15-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 NJ56_09285 80f3ea5fa20b9789aa9124a9bd8bc95a 959 Gene3D G3DSA:3.40.640.10 525 756 2.4E-60 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_09285 80f3ea5fa20b9789aa9124a9bd8bc95a 959 Gene3D G3DSA:3.40.640.10 96 355 7.9E-96 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_09285 80f3ea5fa20b9789aa9124a9bd8bc95a 959 Pfam PF02347 Glycine cleavage system P-protein 16 440 8.0E-180 T 15-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 NJ56_09285 80f3ea5fa20b9789aa9124a9bd8bc95a 959 Pfam PF02347 Glycine cleavage system P-protein 461 739 2.9E-9 T 15-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 NJ56_09285 80f3ea5fa20b9789aa9124a9bd8bc95a 959 Gene3D G3DSA:3.90.1150.10 767 897 7.0E-41 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_07980 a89846e29a64f2187806e9982736782d 199 Pfam PF01794 Ferric reductase like transmembrane component 48 161 1.5E-15 T 15-10-2018 IPR013130 Ferric reductase transmembrane component-like domain NJ56_07980 a89846e29a64f2187806e9982736782d 199 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 5 197 21.195 T 15-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 NJ56_11560 aa9c9148be6f1cfb90a905166cd5e42c 228 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 7 114 9.6E-21 T 15-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 NJ56_11560 aa9c9148be6f1cfb90a905166cd5e42c 228 Gene3D G3DSA:1.10.3720.10 1 223 4.1E-50 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_11560 aa9c9148be6f1cfb90a905166cd5e42c 228 SUPERFAMILY SSF161098 8 205 1.57E-38 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_11560 aa9c9148be6f1cfb90a905166cd5e42c 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 220 2.4E-23 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_00125 1b44ab9ae8ea68724741b2e241506d18 256 SUPERFAMILY SSF53335 15 250 3.22E-38 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_00125 1b44ab9ae8ea68724741b2e241506d18 256 Pfam PF08241 Methyltransferase domain 52 143 6.2E-23 T 15-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 NJ56_00125 1b44ab9ae8ea68724741b2e241506d18 256 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 17 255 6.2E-68 T 15-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 NJ56_00125 1b44ab9ae8ea68724741b2e241506d18 256 Gene3D G3DSA:3.40.50.150 15 202 1.5E-33 T 15-10-2018 NJ56_00125 1b44ab9ae8ea68724741b2e241506d18 256 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 9 255 29.966 T 15-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 NJ56_03270 89848d076016da50e96b4e7fb25f6ba4 159 Pfam PF10696 Protein of unknown function (DUF2501) 78 156 2.4E-28 T 15-10-2018 IPR019637 Protein of unknown function DUF2501 NJ56_05925 76f248988d6cccc49665b0404d5ba699 198 Gene3D G3DSA:1.10.357.10 9 198 7.2E-74 T 15-10-2018 NJ56_05925 76f248988d6cccc49665b0404d5ba699 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 61 7.7E-9 T 15-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NJ56_05925 76f248988d6cccc49665b0404d5ba699 198 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 198 40.885 T 15-10-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 NJ56_05925 76f248988d6cccc49665b0404d5ba699 198 SUPERFAMILY SSF46689 10 73 6.98E-12 T 15-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 NJ56_05925 76f248988d6cccc49665b0404d5ba699 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 15-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site NJ56_05925 76f248988d6cccc49665b0404d5ba699 198 SUPERFAMILY SSF48498 86 195 4.73E-6 T 15-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NJ56_03490 bdcc59c76b4e52b2a54d2e41ad171271 730 SUPERFAMILY SSF52743 260 542 3.14E-32 T 15-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 NJ56_03490 bdcc59c76b4e52b2a54d2e41ad171271 730 Gene3D G3DSA:3.40.50.200 262 545 1.2E-27 T 15-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 NJ56_03490 bdcc59c76b4e52b2a54d2e41ad171271 730 Pfam PF00082 Subtilase family 296 540 1.8E-17 T 15-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 NJ56_03600 ef5f8aa7d0c33a9c1574f928d33dc8c5 364 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 345 2.6E-74 T 15-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 NJ56_03600 ef5f8aa7d0c33a9c1574f928d33dc8c5 364 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 348 2.0E-116 T 15-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 NJ56_07385 b809f598f80073bab3bc75627b009ce4 92 Gene3D G3DSA:3.30.860.10 1 92 3.9E-43 T 15-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07385 b809f598f80073bab3bc75627b009ce4 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.1E-45 T 15-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 NJ56_07385 b809f598f80073bab3bc75627b009ce4 92 Pfam PF00203 Ribosomal protein S19 3 83 1.3E-35 T 15-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07385 b809f598f80073bab3bc75627b009ce4 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 15-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07385 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.5E-24 T 15-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07385 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.5E-24 T 15-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07385 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.5E-24 T 15-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07385 b809f598f80073bab3bc75627b009ce4 92 PIRSF PIRSF002144 1 92 2.0E-31 T 15-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07385 b809f598f80073bab3bc75627b009ce4 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.571 T 15-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07385 b809f598f80073bab3bc75627b009ce4 92 SUPERFAMILY SSF54570 3 84 5.75E-35 T 15-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_12665 e88616a00db646cb61bc16fb034c8163 182 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 15 176 9.5E-54 T 15-10-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 NJ56_12665 e88616a00db646cb61bc16fb034c8163 182 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 14 176 1.4E-53 T 15-10-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 NJ56_16810 e7c8afc3cc7ef01e69ff7aed4a88f15d 401 SUPERFAMILY SSF51690 120 393 1.08E-85 T 15-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 NJ56_16810 e7c8afc3cc7ef01e69ff7aed4a88f15d 401 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 8 395 8.6E-163 T 15-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 NJ56_16810 e7c8afc3cc7ef01e69ff7aed4a88f15d 401 Gene3D G3DSA:3.20.140.10 1 401 1.5E-165 T 15-10-2018 NJ56_16810 e7c8afc3cc7ef01e69ff7aed4a88f15d 401 PIRSF PIRSF000484 1 381 2.3E-58 T 15-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 NJ56_16810 e7c8afc3cc7ef01e69ff7aed4a88f15d 401 SUPERFAMILY SSF54675 3 137 1.0E-41 T 15-10-2018 NJ56_16810 e7c8afc3cc7ef01e69ff7aed4a88f15d 401 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 5 396 48.225 T 15-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 NJ56_16810 e7c8afc3cc7ef01e69ff7aed4a88f15d 401 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 169 395 6.3E-81 T 15-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 NJ56_07155 16f0f0331266bf404bb3edf34402b890 427 Gene3D G3DSA:3.20.20.140 58 365 2.5E-179 T 15-10-2018 NJ56_07155 16f0f0331266bf404bb3edf34402b890 427 Pfam PF07969 Amidohydrolase family 46 405 9.1E-56 T 15-10-2018 IPR013108 Amidohydrolase 3 NJ56_07155 16f0f0331266bf404bb3edf34402b890 427 Gene3D G3DSA:2.30.40.10 12 411 2.5E-179 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_07155 16f0f0331266bf404bb3edf34402b890 427 SUPERFAMILY SSF51338 8 406 2.88E-7 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_07155 16f0f0331266bf404bb3edf34402b890 427 SUPERFAMILY SSF51556 58 376 7.26E-108 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_01630 42feb509812ad78758d3eb6b4deb6031 317 Pfam PF06675 Protein of unknown function (DUF1177) 40 308 2.0E-129 T 15-10-2018 IPR009561 Protein of unknown function DUF1177 NJ56_01300 e095ce5bbb53790d486eba55f10e4d9b 287 Gene3D G3DSA:3.10.129.90 1 285 1.2E-113 T 15-10-2018 NJ56_01300 e095ce5bbb53790d486eba55f10e4d9b 287 Pfam PF13622 Thioesterase-like superfamily 33 282 7.8E-59 T 15-10-2018 NJ56_01300 e095ce5bbb53790d486eba55f10e4d9b 287 SUPERFAMILY SSF54637 5 114 1.01E-40 T 15-10-2018 IPR029069 HotDog domain superfamily NJ56_01300 e095ce5bbb53790d486eba55f10e4d9b 287 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 13 283 7.2E-100 T 15-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 NJ56_01300 e095ce5bbb53790d486eba55f10e4d9b 287 SUPERFAMILY SSF54637 116 283 2.34E-60 T 15-10-2018 IPR029069 HotDog domain superfamily NJ56_06160 3f4f49f5b64ad97455a5a560af2b4ce1 295 Pfam PF13407 Periplasmic binding protein domain 29 281 4.3E-60 T 15-10-2018 IPR025997 Periplasmic binding protein NJ56_06160 3f4f49f5b64ad97455a5a560af2b4ce1 295 SUPERFAMILY SSF53822 26 295 3.14E-86 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_06160 3f4f49f5b64ad97455a5a560af2b4ce1 295 Gene3D G3DSA:3.40.50.2300 127 262 2.2E-98 T 15-10-2018 NJ56_06160 3f4f49f5b64ad97455a5a560af2b4ce1 295 Gene3D G3DSA:3.40.50.2300 31 281 2.2E-98 T 15-10-2018 NJ56_09840 62c3305bc33b558303dce40b6a933805 271 Gene3D G3DSA:3.40.190.10 115 221 6.5E-101 T 15-10-2018 NJ56_09840 62c3305bc33b558303dce40b6a933805 271 PIRSF PIRSF002854 1 271 8.7E-105 T 15-10-2018 IPR004872 Lipoprotein NlpA family NJ56_09840 62c3305bc33b558303dce40b6a933805 271 Pfam PF03180 NLPA lipoprotein 33 271 1.9E-98 T 15-10-2018 IPR004872 Lipoprotein NlpA family NJ56_09840 62c3305bc33b558303dce40b6a933805 271 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 14 271 1.6E-143 T 15-10-2018 IPR004872 Lipoprotein NlpA family NJ56_09840 62c3305bc33b558303dce40b6a933805 271 SUPERFAMILY SSF53850 33 271 6.72E-83 T 15-10-2018 NJ56_09840 62c3305bc33b558303dce40b6a933805 271 Gene3D G3DSA:3.40.190.10 34 265 6.5E-101 T 15-10-2018 NJ56_06190 5e26bc9dcbd9904e80dadf3cd6342f61 488 SMART SM00327 324 488 8.2E-7 T 15-10-2018 IPR002035 von Willebrand factor, type A NJ56_06190 5e26bc9dcbd9904e80dadf3cd6342f61 488 Pfam PF05762 VWA domain containing CoxE-like protein 313 441 1.7E-7 T 15-10-2018 IPR008912 Uncharacterised protein family CoxE-like NJ56_06190 5e26bc9dcbd9904e80dadf3cd6342f61 488 SUPERFAMILY SSF53300 323 465 7.02E-18 T 15-10-2018 IPR036465 von Willebrand factor A-like domain superfamily NJ56_06190 5e26bc9dcbd9904e80dadf3cd6342f61 488 Hamap MF_01626 Protein ViaA [viaA]. 1 488 57.925 T 15-10-2018 IPR023481 Uncharacterised protein family ViaA NJ56_06190 5e26bc9dcbd9904e80dadf3cd6342f61 488 Gene3D G3DSA:3.40.50.410 326 469 6.0E-6 T 15-10-2018 IPR036465 von Willebrand factor A-like domain superfamily NJ56_17190 4ce729323e8a3e20dc63ef72418cb173 430 TIGRFAM TIGR00814 stp: serine transporter 20 419 2.0E-177 T 15-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 NJ56_15560 84207ae9d8d4b60cd67a20431ab40d62 147 Gene3D G3DSA:3.90.79.10 1 133 1.8E-36 T 15-10-2018 NJ56_15560 84207ae9d8d4b60cd67a20431ab40d62 147 SUPERFAMILY SSF55811 3 124 2.84E-31 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_15560 84207ae9d8d4b60cd67a20431ab40d62 147 Pfam PF00293 NUDIX domain 5 122 4.5E-20 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_15560 84207ae9d8d4b60cd67a20431ab40d62 147 PRINTS PR00502 NUDIX hydrolase family signature 44 59 3.2E-5 T 15-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 NJ56_15560 84207ae9d8d4b60cd67a20431ab40d62 147 PRINTS PR00502 NUDIX hydrolase family signature 30 44 3.2E-5 T 15-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 NJ56_07695 c2531b9448e4626eb24df02d381444fc 140 Pfam PF04965 Gene 25-like lysozyme 30 118 3.7E-22 T 15-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD NJ56_07695 c2531b9448e4626eb24df02d381444fc 140 SUPERFAMILY SSF160719 26 132 1.07E-27 T 15-10-2018 NJ56_07695 c2531b9448e4626eb24df02d381444fc 140 Gene3D G3DSA:3.10.450.40 4 134 3.0E-41 T 15-10-2018 NJ56_13005 c3618d2e7a6b104c7970ed567a368356 145 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 43 111 2.8E-21 T 15-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 NJ56_13005 c3618d2e7a6b104c7970ed567a368356 145 Pfam PF04347 Flagellar biosynthesis protein, FliO 55 139 5.7E-23 T 15-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 NJ56_03280 321ad55e1425c2055b449e46d22a8cd1 284 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 15-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 NJ56_03280 321ad55e1425c2055b449e46d22a8cd1 284 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 283 4.1E-102 T 15-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 NJ56_03280 321ad55e1425c2055b449e46d22a8cd1 284 PIRSF PIRSF001359 1 284 4.9E-110 T 15-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 NJ56_03280 321ad55e1425c2055b449e46d22a8cd1 284 SUPERFAMILY SSF51569 1 283 1.47E-101 T 15-10-2018 NJ56_03280 321ad55e1425c2055b449e46d22a8cd1 284 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 3 283 3.9E-162 T 15-10-2018 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 NJ56_03280 321ad55e1425c2055b449e46d22a8cd1 284 Gene3D G3DSA:3.20.20.70 1 284 1.4E-106 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_03280 321ad55e1425c2055b449e46d22a8cd1 284 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 283 1.4E-99 T 15-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 NJ56_02170 17938dd86e9aba4c20f447c3b815f020 308 PRINTS PR00956 Flagellar motor switch protein FliN signature 278 293 6.1E-6 T 15-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 NJ56_02170 17938dd86e9aba4c20f447c3b815f020 308 PRINTS PR00956 Flagellar motor switch protein FliN signature 232 248 6.1E-6 T 15-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 NJ56_02170 17938dd86e9aba4c20f447c3b815f020 308 PRINTS PR00956 Flagellar motor switch protein FliN signature 249 265 6.1E-6 T 15-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 NJ56_02170 17938dd86e9aba4c20f447c3b815f020 308 SUPERFAMILY SSF101801 234 301 1.2E-13 T 15-10-2018 IPR036429 SpoA-like superfamily NJ56_02170 17938dd86e9aba4c20f447c3b815f020 308 Gene3D G3DSA:2.30.330.10 234 303 8.0E-19 T 15-10-2018 IPR036429 SpoA-like superfamily NJ56_02170 17938dd86e9aba4c20f447c3b815f020 308 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 233 302 1.4E-13 T 15-10-2018 IPR001543 Surface presentation of antigen (SpoA) NJ56_18175 0d24d84ec3f045072830b14adaa83feb 863 Gene3D G3DSA:1.10.8.730 537 649 2.4E-39 T 15-10-2018 NJ56_18175 0d24d84ec3f045072830b14adaa83feb 863 SUPERFAMILY SSF52540 462 757 1.04E-33 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_18175 0d24d84ec3f045072830b14adaa83feb 863 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 34 270 5.5E-40 T 15-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase NJ56_18175 0d24d84ec3f045072830b14adaa83feb 863 TIGRFAM TIGR02746 TraC-F-type: type-IV secretion system protein TraC 40 847 1.9E-247 T 15-10-2018 IPR014117 Type-IV secretion system protein TraC NJ56_18175 0d24d84ec3f045072830b14adaa83feb 863 Gene3D G3DSA:3.40.50.300 459 781 2.4E-39 T 15-10-2018 NJ56_07320 7908398f533c371b21797b4b6e92f361 95 Pfam PF04077 DsrH like protein 7 91 6.8E-27 T 15-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 NJ56_07320 7908398f533c371b21797b4b6e92f361 95 Gene3D G3DSA:3.40.1260.10 1 95 4.6E-28 T 15-10-2018 IPR027396 DsrEFH-like NJ56_07320 7908398f533c371b21797b4b6e92f361 95 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 95 1.6E-28 T 15-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 NJ56_07320 7908398f533c371b21797b4b6e92f361 95 SUPERFAMILY SSF75169 1 95 2.5E-27 T 15-10-2018 IPR027396 DsrEFH-like NJ56_07320 7908398f533c371b21797b4b6e92f361 95 Hamap MF_01564 Protein TusB [tusB]. 1 95 27.139 T 15-10-2018 IPR023526 Sulphur relay, TusB GO:0002143|GO:0005737 NJ56_05840 afe76a1d34c7077291397097ced8fb71 457 Pfam PF01551 Peptidase family M23 358 451 1.1E-25 T 15-10-2018 IPR016047 Peptidase M23 NJ56_05840 afe76a1d34c7077291397097ced8fb71 457 SUPERFAMILY SSF51261 284 455 3.01E-46 T 15-10-2018 IPR011055 Duplicated hybrid motif NJ56_05840 afe76a1d34c7077291397097ced8fb71 457 Gene3D G3DSA:2.70.70.10 317 457 1.5E-38 T 15-10-2018 IPR011055 Duplicated hybrid motif NJ56_17010 c969804069be3abcb65a16c16dce5aec 236 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 39 214 3.0E-75 T 15-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 NJ56_17010 c969804069be3abcb65a16c16dce5aec 236 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 37 203 1.8E-71 T 15-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 NJ56_17010 c969804069be3abcb65a16c16dce5aec 236 SUPERFAMILY SSF55729 2 228 1.48E-93 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_17010 c969804069be3abcb65a16c16dce5aec 236 Gene3D G3DSA:3.40.630.70 62 234 4.5E-69 T 15-10-2018 NJ56_17010 c969804069be3abcb65a16c16dce5aec 236 Gene3D G3DSA:2.30.210.20 2 61 5.8E-26 T 15-10-2018 NJ56_17010 c969804069be3abcb65a16c16dce5aec 236 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 236 96.753 T 15-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 NJ56_11260 a4a66efb62dac28102e5add4947856d9 158 Pfam PF05232 Chlorhexidine efflux transporter 74 137 5.5E-24 T 15-10-2018 IPR007896 Chlorhexidine efflux transporter NJ56_11260 a4a66efb62dac28102e5add4947856d9 158 Pfam PF05232 Chlorhexidine efflux transporter 6 68 1.2E-24 T 15-10-2018 IPR007896 Chlorhexidine efflux transporter NJ56_13090 bce7c5e906ef8aa55178b5a7c394a1de 121 Gene3D G3DSA:1.20.58.380 2 110 1.1E-34 T 15-10-2018 NJ56_13090 bce7c5e906ef8aa55178b5a7c394a1de 121 Pfam PF05400 Flagellar protein FliT 21 106 2.3E-21 T 15-10-2018 IPR008622 Flagellar protein FliT NJ56_13090 bce7c5e906ef8aa55178b5a7c394a1de 121 Hamap MF_01180 Flagellar protein FliT [fliT]. 1 120 25.843 T 15-10-2018 IPR008622 Flagellar protein FliT NJ56_01540 2d9d35c182eab7ddfd49dea0a352f28a 110 Pfam PF02699 Preprotein translocase subunit 24 99 7.1E-26 T 15-10-2018 IPR003849 Preprotein translocase YajC NJ56_01540 2d9d35c182eab7ddfd49dea0a352f28a 110 SMART SM01323 19 102 8.2E-36 T 15-10-2018 IPR003849 Preprotein translocase YajC NJ56_01540 2d9d35c182eab7ddfd49dea0a352f28a 110 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 102 1.2E-32 T 15-10-2018 IPR003849 Preprotein translocase YajC NJ56_01540 2d9d35c182eab7ddfd49dea0a352f28a 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 3.6E-16 T 15-10-2018 IPR003849 Preprotein translocase YajC NJ56_01540 2d9d35c182eab7ddfd49dea0a352f28a 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 3.6E-16 T 15-10-2018 IPR003849 Preprotein translocase YajC NJ56_11820 3335e39fc514eb85ed012fb83d4107e5 87 SUPERFAMILY SSF54292 7 86 4.46E-20 T 15-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 NJ56_11820 3335e39fc514eb85ed012fb83d4107e5 87 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 15-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 NJ56_11820 3335e39fc514eb85ed012fb83d4107e5 87 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 80 6.6E-13 T 15-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NJ56_11820 3335e39fc514eb85ed012fb83d4107e5 87 Gene3D G3DSA:3.10.20.30 1 87 4.4E-19 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_04225 38bde196cbafbf72b79f0c70c1a62044 203 SMART SM00421 140 197 1.3E-10 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_04225 38bde196cbafbf72b79f0c70c1a62044 203 SUPERFAMILY SSF46894 134 195 1.26E-13 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_04225 38bde196cbafbf72b79f0c70c1a62044 203 Gene3D G3DSA:3.40.50.12740 3 200 6.0E-13 T 15-10-2018 NJ56_04225 38bde196cbafbf72b79f0c70c1a62044 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 173 1.4E-6 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_04225 38bde196cbafbf72b79f0c70c1a62044 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 157 1.4E-6 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_04225 38bde196cbafbf72b79f0c70c1a62044 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 185 1.4E-6 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_04225 38bde196cbafbf72b79f0c70c1a62044 203 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 194 1.8E-11 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_02665 92d23b4d4577ab1e7432a44dbd46f9f5 130 SUPERFAMILY SSF55811 1 127 5.55E-37 T 15-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 NJ56_02665 92d23b4d4577ab1e7432a44dbd46f9f5 130 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 15-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NJ56_02665 92d23b4d4577ab1e7432a44dbd46f9f5 130 PRINTS PR01401 Mutator MutT protein signature 2 23 5.4E-12 T 15-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 NJ56_02665 92d23b4d4577ab1e7432a44dbd46f9f5 130 PRINTS PR01401 Mutator MutT protein signature 77 90 5.4E-12 T 15-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 NJ56_02665 92d23b4d4577ab1e7432a44dbd46f9f5 130 Pfam PF00293 NUDIX domain 6 123 4.4E-20 T 15-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 NJ56_02665 92d23b4d4577ab1e7432a44dbd46f9f5 130 Gene3D G3DSA:3.90.79.10 1 128 6.5E-38 T 15-10-2018 NJ56_02665 92d23b4d4577ab1e7432a44dbd46f9f5 130 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 127 1.4E-52 T 15-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 NJ56_02665 92d23b4d4577ab1e7432a44dbd46f9f5 130 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.2E-8 T 15-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 NJ56_02665 92d23b4d4577ab1e7432a44dbd46f9f5 130 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.2E-8 T 15-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 NJ56_13275 d9247aa95400d90aab45ba0323b85213 460 Pfam PF07484 Phage Tail Collar Domain 308 355 3.0E-14 T 15-10-2018 IPR011083 Phage tail collar domain NJ56_13275 d9247aa95400d90aab45ba0323b85213 460 Gene3D G3DSA:3.90.1340.10 304 356 1.6E-24 T 15-10-2018 IPR037053 Phage tail collar domain superfamily NJ56_13275 d9247aa95400d90aab45ba0323b85213 460 Pfam PF12571 Phage tail-collar fibre protein 1 150 7.6E-62 T 15-10-2018 IPR022225 Phage tail fibre protein NJ56_13275 d9247aa95400d90aab45ba0323b85213 460 SUPERFAMILY SSF88874 303 459 1.12E-34 T 15-10-2018 NJ56_02660 28a433ff47a8c39435605356e2175c94 66 Pfam PF03884 DNA gyrase inhibitor YacG 8 58 7.4E-25 T 15-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 NJ56_02660 28a433ff47a8c39435605356e2175c94 66 SUPERFAMILY SSF57716 6 64 6.49E-22 T 15-10-2018 NJ56_02660 28a433ff47a8c39435605356e2175c94 66 Gene3D G3DSA:3.30.50.10 2 66 4.8E-26 T 15-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 NJ56_02660 28a433ff47a8c39435605356e2175c94 66 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 4 60 18.479 T 15-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 NJ56_00920 fe66c7147a8a58fa2572ce63068a7d12 197 SUPERFAMILY SSF53098 107 191 2.58E-16 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_00920 fe66c7147a8a58fa2572ce63068a7d12 197 Pfam PF00665 Integrase core domain 114 188 1.9E-7 T 15-10-2018 IPR001584 Integrase, catalytic core GO:0015074 NJ56_00920 fe66c7147a8a58fa2572ce63068a7d12 197 Pfam PF13276 HTH-like domain 44 98 1.0E-12 T 15-10-2018 IPR025948 HTH-like domain NJ56_00920 fe66c7147a8a58fa2572ce63068a7d12 197 Gene3D G3DSA:3.30.420.10 106 193 2.6E-9 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_04920 273d1111e716b49114a600a25cd5655e 195 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 140 19.123 T 15-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 NJ56_04920 273d1111e716b49114a600a25cd5655e 195 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 4.6E-33 T 15-10-2018 NJ56_04920 273d1111e716b49114a600a25cd5655e 195 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 4.6E-33 T 15-10-2018 NJ56_04920 273d1111e716b49114a600a25cd5655e 195 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 4.6E-33 T 15-10-2018 NJ56_04920 273d1111e716b49114a600a25cd5655e 195 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 8.7E-33 T 15-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 Gene3D G3DSA:3.60.21.10 26 362 3.2E-132 T 15-10-2018 IPR029052 Metallo-dependent phosphatase-like NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 Pfam PF00149 Calcineurin-like phosphoesterase 35 254 9.2E-17 T 15-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 SUPERFAMILY SSF55816 363 542 1.01E-51 T 15-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 Gene3D G3DSA:3.90.780.10 363 549 7.8E-59 T 15-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 SUPERFAMILY SSF56300 27 360 2.37E-96 T 15-10-2018 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 ProSitePatterns PS00786 5'-nucleotidase signature 2. 109 120 - T 15-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 ProSitePatterns PS00785 5'-nucleotidase signature 1. 34 46 - T 15-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 Pfam PF02872 5'-nucleotidase, C-terminal domain 363 508 1.5E-34 T 15-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 PRINTS PR01607 Apyrase family signature 207 224 1.8E-60 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 PRINTS PR01607 Apyrase family signature 283 303 1.8E-60 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 PRINTS PR01607 Apyrase family signature 238 261 1.8E-60 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 PRINTS PR01607 Apyrase family signature 32 50 1.8E-60 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 PRINTS PR01607 Apyrase family signature 417 440 1.8E-60 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_01075 c5fc1cd18e561b6e875d84f610d51db4 550 PRINTS PR01607 Apyrase family signature 484 503 1.8E-60 T 15-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 NJ56_03550 1da4f7a8d3522d1362371f5b652470fe 152 PIRSF PIRSF018267 1 138 8.6E-53 T 15-10-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 NJ56_03550 1da4f7a8d3522d1362371f5b652470fe 152 Gene3D G3DSA:3.40.960.10 20 142 2.6E-45 T 15-10-2018 NJ56_03550 1da4f7a8d3522d1362371f5b652470fe 152 SUPERFAMILY SSF52980 1 136 2.09E-50 T 15-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 NJ56_03550 1da4f7a8d3522d1362371f5b652470fe 152 TIGRFAM TIGR00632 vsr: DNA mismatch endonuclease Vsr 2 117 3.6E-40 T 15-10-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 NJ56_03550 1da4f7a8d3522d1362371f5b652470fe 152 Pfam PF03852 DNA mismatch endonuclease Vsr 2 71 5.1E-31 T 15-10-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 NJ56_05795 64e90e222737d70a578954faf44c4809 232 SUPERFAMILY SSF52172 1 188 1.85E-41 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_05795 64e90e222737d70a578954faf44c4809 232 Pfam PF00072 Response regulator receiver domain 4 112 8.0E-31 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_05795 64e90e222737d70a578954faf44c4809 232 Gene3D G3DSA:3.40.50.2300 1 129 2.1E-42 T 15-10-2018 NJ56_05795 64e90e222737d70a578954faf44c4809 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 228 1.7E-20 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_05795 64e90e222737d70a578954faf44c4809 232 SMART SM00448 2 111 1.1E-46 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_05795 64e90e222737d70a578954faf44c4809 232 Gene3D G3DSA:1.10.10.10 130 232 3.5E-28 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_05795 64e90e222737d70a578954faf44c4809 232 SMART SM00862 152 228 6.8E-22 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_11895 d25c822c564bf6c02fcb87d121a0236c 80 Gene3D G3DSA:3.30.910.10 1 79 3.1E-16 T 15-10-2018 IPR036687 DinI-like superfamily NJ56_11895 d25c822c564bf6c02fcb87d121a0236c 80 SUPERFAMILY SSF54857 1 77 6.93E-22 T 15-10-2018 IPR036687 DinI-like superfamily NJ56_11895 d25c822c564bf6c02fcb87d121a0236c 80 Pfam PF06183 DinI-like family 17 76 1.0E-22 T 15-10-2018 IPR010391 DNA damage-inducible protein DinI-like NJ56_13010 c5a6b5fbfe7ecb90b5eaf3308e818e51 138 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 57 127 1.1E-25 T 15-10-2018 IPR001543 Surface presentation of antigen (SpoA) NJ56_13010 c5a6b5fbfe7ecb90b5eaf3308e818e51 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 90 103 3.7E-30 T 15-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 NJ56_13010 c5a6b5fbfe7ecb90b5eaf3308e818e51 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 103 118 3.7E-30 T 15-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 NJ56_13010 c5a6b5fbfe7ecb90b5eaf3308e818e51 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 57 73 3.7E-30 T 15-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 NJ56_13010 c5a6b5fbfe7ecb90b5eaf3308e818e51 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 74 90 3.7E-30 T 15-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 NJ56_13010 c5a6b5fbfe7ecb90b5eaf3308e818e51 138 Pfam PF16973 Flagellar motor switch protein FliN N-terminal 1 50 1.0E-24 T 15-10-2018 IPR031576 Flagellar motor switch protein FliN, N-terminal NJ56_13010 c5a6b5fbfe7ecb90b5eaf3308e818e51 138 Gene3D G3DSA:2.30.330.10 44 138 8.1E-35 T 15-10-2018 IPR036429 SpoA-like superfamily NJ56_13010 c5a6b5fbfe7ecb90b5eaf3308e818e51 138 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 55 129 2.7E-33 T 15-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 NJ56_13010 c5a6b5fbfe7ecb90b5eaf3308e818e51 138 SUPERFAMILY SSF101801 55 136 1.44E-26 T 15-10-2018 IPR036429 SpoA-like superfamily NJ56_09125 3b23a414635bade56c24520e0a874028 294 TIGRFAM TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase 4 285 1.4E-145 T 15-10-2018 IPR017755 N-carbamoylputrescine amidase GO:0006596|GO:0050126 KEGG: 00330+3.5.1.53|MetaCyc: PWY-43 NJ56_09125 3b23a414635bade56c24520e0a874028 294 Gene3D G3DSA:3.60.110.10 1 293 1.1E-105 T 15-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily NJ56_09125 3b23a414635bade56c24520e0a874028 294 Pfam PF00795 Carbon-nitrogen hydrolase 5 268 5.3E-55 T 15-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 NJ56_09125 3b23a414635bade56c24520e0a874028 294 SUPERFAMILY SSF56317 1 285 5.49E-82 T 15-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily NJ56_12865 bb2a41892d37082e530073f0b401f35d 176 Pfam PF00419 Fimbrial protein 43 176 3.0E-11 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_12865 bb2a41892d37082e530073f0b401f35d 176 Gene3D G3DSA:2.60.40.1090 52 176 6.4E-28 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_12865 bb2a41892d37082e530073f0b401f35d 176 SUPERFAMILY SSF49401 51 176 1.89E-14 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_11755 7effff910732f1e4065336cce4d9cddd 255 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 11 252 34.756 T 15-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 NJ56_11755 7effff910732f1e4065336cce4d9cddd 255 Pfam PF00561 alpha/beta hydrolase fold 15 233 2.4E-17 T 15-10-2018 IPR000073 Alpha/beta hydrolase fold-1 NJ56_11755 7effff910732f1e4065336cce4d9cddd 255 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 14 251 7.5E-81 T 15-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 NJ56_11755 7effff910732f1e4065336cce4d9cddd 255 Gene3D G3DSA:3.40.50.1820 4 252 8.4E-63 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_11755 7effff910732f1e4065336cce4d9cddd 255 SUPERFAMILY SSF53474 5 251 2.43E-45 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_00805 416135126b9d9a9fec35522956ad0fe0 143 Gene3D G3DSA:3.30.565.10 1 142 1.5E-13 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_00805 416135126b9d9a9fec35522956ad0fe0 143 SUPERFAMILY SSF55874 28 117 1.39E-8 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_00805 416135126b9d9a9fec35522956ad0fe0 143 Pfam PF13581 Histidine kinase-like ATPase domain 6 136 1.7E-15 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_16005 c292d5b2cb5864e9588d455c38473ba3 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.231 T 15-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 NJ56_16005 c292d5b2cb5864e9588d455c38473ba3 284 SUPERFAMILY SSF51569 3 279 7.51E-103 T 15-10-2018 NJ56_16005 c292d5b2cb5864e9588d455c38473ba3 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 6.7E-119 T 15-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 NJ56_16005 c292d5b2cb5864e9588d455c38473ba3 284 Pfam PF00793 DAHP synthetase I family 10 275 1.5E-68 T 15-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 NJ56_16005 c292d5b2cb5864e9588d455c38473ba3 284 Gene3D G3DSA:3.20.20.70 1 284 2.8E-98 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_07460 253ea66be557a472c24c57e4dfc767d0 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 4.6E-31 T 15-10-2018 IPR021131 Ribosomal protein L18e/L15P NJ56_07460 253ea66be557a472c24c57e4dfc767d0 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.12 T 15-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 NJ56_07460 253ea66be557a472c24c57e4dfc767d0 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 2.0E-51 T 15-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_07460 253ea66be557a472c24c57e4dfc767d0 144 Gene3D G3DSA:3.100.10.10 70 144 7.8E-12 T 15-10-2018 NJ56_07460 253ea66be557a472c24c57e4dfc767d0 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 15-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07460 253ea66be557a472c24c57e4dfc767d0 144 SUPERFAMILY SSF52080 4 143 1.44E-46 T 15-10-2018 IPR036227 Ribosomal L18e/L15P superfamily NJ56_05935 ce66623d43b94661e5a1a4a12fed67bc 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 15-10-2018 IPR018336 Ribonuclease PH, conserved site NJ56_05935 ce66623d43b94661e5a1a4a12fed67bc 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 1.7E-24 T 15-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_05935 ce66623d43b94661e5a1a4a12fed67bc 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 45.18 T 15-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 NJ56_05935 ce66623d43b94661e5a1a4a12fed67bc 238 SUPERFAMILY SSF55666 153 237 7.46E-25 T 15-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_05935 ce66623d43b94661e5a1a4a12fed67bc 238 SUPERFAMILY SSF54211 1 181 5.06E-45 T 15-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold NJ56_05935 ce66623d43b94661e5a1a4a12fed67bc 238 Gene3D G3DSA:3.30.230.70 10 238 1.0E-63 T 15-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_05935 ce66623d43b94661e5a1a4a12fed67bc 238 Pfam PF03725 3' exoribonuclease family, domain 2 158 222 5.6E-10 T 15-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 NJ56_05935 ce66623d43b94661e5a1a4a12fed67bc 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 1.2E-110 T 15-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 NJ56_13935 c327c3a836773a5fc8367a1158d40052 153 PIRSF PIRSF020687 1 152 5.1E-69 T 15-10-2018 IPR009328 Protein of unknown function DUF986 NJ56_13935 c327c3a836773a5fc8367a1158d40052 153 Hamap MF_01071 UPF0266 membrane protein YobD [yobD]. 1 152 32.175 T 15-10-2018 IPR009328 Protein of unknown function DUF986 NJ56_13935 c327c3a836773a5fc8367a1158d40052 153 Pfam PF06173 Protein of unknown function (DUF986) 4 150 1.1E-64 T 15-10-2018 IPR009328 Protein of unknown function DUF986 NJ56_13935 c327c3a836773a5fc8367a1158d40052 153 ProDom PD091196 MEMBRANE UPF0266 TRANSMEMBRANE INNER YOBD PLU2700 LMO0779 PM0830 YPO1755/Y2554/YP1637 LIN0773 22 144 3.0E-54 T 15-10-2018 IPR009328 Protein of unknown function DUF986 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 SUPERFAMILY SSF88659 152 238 1.53E-20 T 15-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 Gene3D G3DSA:1.20.140.160 87 239 1.0E-45 T 15-10-2018 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 SUPERFAMILY SSF88659 90 164 6.54E-15 T 15-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 Gene3D G3DSA:1.10.1740.10 4 85 4.1E-27 T 15-10-2018 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 43 56 - T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 Pfam PF04545 Sigma-70, region 4 185 234 2.7E-17 T 15-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 Pfam PF04539 Sigma-70 region 3 97 163 1.8E-15 T 15-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 239 62.983 T 15-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 SUPERFAMILY SSF88946 5 88 1.88E-23 T 15-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 206 232 - T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 236 1.0E-32 T 15-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 PRINTS PR00046 Major sigma-70 factor signature 221 232 1.6E-13 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 PRINTS PR00046 Major sigma-70 factor signature 43 56 1.6E-13 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 PRINTS PR00046 Major sigma-70 factor signature 67 75 1.6E-13 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 PRINTS PR00046 Major sigma-70 factor signature 189 201 1.6E-13 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 PRINTS PR00046 Major sigma-70 factor signature 206 221 1.6E-13 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 16 236 1.7E-83 T 15-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 PIRSF PIRSF000770 3 240 1.1E-39 T 15-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 NJ56_13120 fa974dbdf9817d8bff9827ec4f835187 240 Pfam PF04542 Sigma-70 region 2 16 88 2.2E-16 T 15-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 NJ56_15370 50134f844d6796c7ff8990ffe1405520 222 Gene3D G3DSA:3.40.50.12740 16 207 2.9E-12 T 15-10-2018 NJ56_15370 50134f844d6796c7ff8990ffe1405520 222 SMART SM00421 144 201 4.4E-7 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_15370 50134f844d6796c7ff8990ffe1405520 222 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_15370 50134f844d6796c7ff8990ffe1405520 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 2.7E-6 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_15370 50134f844d6796c7ff8990ffe1405520 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 2.7E-6 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_15370 50134f844d6796c7ff8990ffe1405520 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 2.7E-6 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_15370 50134f844d6796c7ff8990ffe1405520 222 SUPERFAMILY SSF46894 140 206 2.45E-13 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_15370 50134f844d6796c7ff8990ffe1405520 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 198 3.4E-12 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_09405 13a7ea7e0b7469952597d62abd7b62cf 126 TIGRFAM TIGR01707 gspI: type II secretion system protein I 12 109 1.1E-16 T 15-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 NJ56_09405 13a7ea7e0b7469952597d62abd7b62cf 126 Gene3D G3DSA:3.30.1300.30 40 126 2.7E-6 T 15-10-2018 NJ56_09405 13a7ea7e0b7469952597d62abd7b62cf 126 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 32 7.7E-7 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_09405 13a7ea7e0b7469952597d62abd7b62cf 126 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 31 8.2E-6 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_09405 13a7ea7e0b7469952597d62abd7b62cf 126 SUPERFAMILY SSF54523 45 114 2.28E-6 T 15-10-2018 NJ56_06600 9c10b586686cdb6a1ccdc7609bf8b230 330 Hamap MF_01949 O-acetyltransferase WecH [wecH]. 1 330 38.836 T 15-10-2018 IPR032905 O-acetyltransferase WecH GO:0009246|GO:0016413 NJ56_06600 9c10b586686cdb6a1ccdc7609bf8b230 330 Pfam PF01757 Acyltransferase family 6 312 5.6E-26 T 15-10-2018 IPR002656 Acyltransferase 3 GO:0016747 NJ56_10975 a00f0e427c630865b1dfb2de3468d324 88 Gene3D G3DSA:3.30.70.920 6 76 7.8E-27 T 15-10-2018 NJ56_10975 a00f0e427c630865b1dfb2de3468d324 88 Hamap MF_02200 Chaperone NapD [napD]. 6 83 18.421 T 15-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly NJ56_10975 a00f0e427c630865b1dfb2de3468d324 88 Pfam PF03927 NapD protein 6 82 1.1E-25 T 15-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly NJ56_03060 accaf9a6a6e61da180b9889ad99fbf49 159 Pfam PF05981 CreA protein 24 155 4.7E-58 T 15-10-2018 IPR010292 Uncharacterised protein family CreA NJ56_03060 accaf9a6a6e61da180b9889ad99fbf49 159 PIRSF PIRSF003174 1 159 3.1E-67 T 15-10-2018 IPR010292 Uncharacterised protein family CreA NJ56_09215 ad677f15356df43bab2545ada574aa45 205 TIGRFAM TIGR00948 2a75: L-lysine exporter 15 191 4.8E-65 T 15-10-2018 IPR004777 L-lysine exporter/arginine exporter GO:0016021 NJ56_09215 ad677f15356df43bab2545ada574aa45 205 Pfam PF01810 LysE type translocator 14 201 4.7E-50 T 15-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 NJ56_09215 ad677f15356df43bab2545ada574aa45 205 Hamap MF_01901 Arginine exporter protein ArgO [argO]. 1 205 38.755 T 15-10-2018 IPR023445 Arginine exporter protein ArgO, enterobacteria GO:0015181|GO:0015809 NJ56_12940 15a68a0f7082726b32bfc94c2c7461ec 134 Pfam PF00460 Flagella basal body rod protein 7 37 3.3E-9 T 15-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 NJ56_12940 15a68a0f7082726b32bfc94c2c7461ec 134 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 134 1.4E-52 T 15-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 NJ56_12940 15a68a0f7082726b32bfc94c2c7461ec 134 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 15-10-2018 IPR019776 Flagellar basal body rod protein, conserved site NJ56_12940 15a68a0f7082726b32bfc94c2c7461ec 134 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 87 131 2.6E-12 T 15-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain NJ56_11345 d4c72d541f11173558b41116787033e5 70 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 12 58 8.3E-16 T 15-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 NJ56_11345 d4c72d541f11173558b41116787033e5 70 Pfam PF04995 Heme exporter protein D (CcmD) 15 58 6.0E-15 T 15-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 NJ56_16150 ca7f6dacaea49ba1cadfa6a58c1d0506 181 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_16150 ca7f6dacaea49ba1cadfa6a58c1d0506 181 Pfam PF12800 4Fe-4S binding domain 9 22 0.035 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_16150 ca7f6dacaea49ba1cadfa6a58c1d0506 181 Pfam PF00037 4Fe-4S binding domain 83 104 5.1E-8 T 15-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NJ56_16150 ca7f6dacaea49ba1cadfa6a58c1d0506 181 Gene3D G3DSA:3.30.70.20 5 167 2.0E-28 T 15-10-2018 NJ56_16150 ca7f6dacaea49ba1cadfa6a58c1d0506 181 SUPERFAMILY SSF54862 1 170 2.51E-43 T 15-10-2018 NJ56_16150 ca7f6dacaea49ba1cadfa6a58c1d0506 181 Gene3D G3DSA:3.30.70.20 64 130 2.0E-28 T 15-10-2018 NJ56_05070 9c0b631af49c0bb13b9134b2749c6aa3 371 SUPERFAMILY SSF53822 25 366 4.37E-90 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_05070 9c0b631af49c0bb13b9134b2749c6aa3 371 Pfam PF13458 Periplasmic binding protein 27 361 3.0E-63 T 15-10-2018 IPR028081 Leucine-binding protein domain NJ56_05070 9c0b631af49c0bb13b9134b2749c6aa3 371 Gene3D G3DSA:3.40.50.2300 28 347 1.5E-117 T 15-10-2018 NJ56_05070 9c0b631af49c0bb13b9134b2749c6aa3 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 255 273 1.9E-61 T 15-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NJ56_05070 9c0b631af49c0bb13b9134b2749c6aa3 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 331 346 1.9E-61 T 15-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NJ56_05070 9c0b631af49c0bb13b9134b2749c6aa3 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 278 291 1.9E-61 T 15-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NJ56_05070 9c0b631af49c0bb13b9134b2749c6aa3 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 27 43 1.9E-61 T 15-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NJ56_05070 9c0b631af49c0bb13b9134b2749c6aa3 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 49 65 1.9E-61 T 15-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NJ56_05070 9c0b631af49c0bb13b9134b2749c6aa3 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 68 86 1.9E-61 T 15-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NJ56_05070 9c0b631af49c0bb13b9134b2749c6aa3 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 89 99 1.9E-61 T 15-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NJ56_05070 9c0b631af49c0bb13b9134b2749c6aa3 371 Gene3D G3DSA:3.40.50.2300 145 273 1.5E-117 T 15-10-2018 NJ56_13615 a41ef31885cf0ec3d44a1a95d7f745c3 218 Pfam PF07885 Ion channel 158 207 5.0E-9 T 15-10-2018 IPR013099 Potassium channel domain NJ56_13615 a41ef31885cf0ec3d44a1a95d7f745c3 218 SUPERFAMILY SSF81324 116 210 5.89E-14 T 15-10-2018 NJ56_13615 a41ef31885cf0ec3d44a1a95d7f745c3 218 Gene3D G3DSA:1.10.287.70 154 217 2.0E-13 T 15-10-2018 NJ56_09095 254bbe74c2861a530c1aeb526aab7f58 96 SMART SM01152 7 83 4.2E-35 T 15-10-2018 IPR003746 Protein of unknown function DUF167 NJ56_09095 254bbe74c2861a530c1aeb526aab7f58 96 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 11 81 6.8E-25 T 15-10-2018 IPR003746 Protein of unknown function DUF167 NJ56_09095 254bbe74c2861a530c1aeb526aab7f58 96 Gene3D G3DSA:3.30.1200.10 1 96 1.4E-34 T 15-10-2018 IPR036591 YggU-like superfamily NJ56_09095 254bbe74c2861a530c1aeb526aab7f58 96 SUPERFAMILY SSF69786 9 95 6.15E-31 T 15-10-2018 IPR036591 YggU-like superfamily NJ56_09095 254bbe74c2861a530c1aeb526aab7f58 96 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 93 19.739 T 15-10-2018 IPR003746 Protein of unknown function DUF167 NJ56_09095 254bbe74c2861a530c1aeb526aab7f58 96 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 8 90 2.6E-29 T 15-10-2018 IPR005228 Conserved hypothetical protein CHP00251 NJ56_13430 99e02f9beedb01c8115a94234c736360 342 SUPERFAMILY SSF56349 64 331 7.65E-46 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_13430 99e02f9beedb01c8115a94234c736360 342 Gene3D G3DSA:1.10.443.10 173 340 2.2E-47 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_13430 99e02f9beedb01c8115a94234c736360 342 Pfam PF00589 Phage integrase family 178 323 2.5E-21 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_07415 ef579afa098d4894ee0264509b155517 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 3.0E-59 T 15-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 NJ56_07415 ef579afa098d4894ee0264509b155517 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 15-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_07415 ef579afa098d4894ee0264509b155517 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 27.187 T 15-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 NJ56_07415 ef579afa098d4894ee0264509b155517 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 7.1E-54 T 15-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 NJ56_07415 ef579afa098d4894ee0264509b155517 123 SMART SM01374 1 123 1.4E-84 T 15-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 NJ56_07415 ef579afa098d4894ee0264509b155517 123 SUPERFAMILY SSF50193 2 122 1.57E-50 T 15-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 NJ56_07415 ef579afa098d4894ee0264509b155517 123 Gene3D G3DSA:2.40.150.20 1 123 2.4E-56 T 15-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 NJ56_05035 c45c47b306e5e3406ca1a7365959e3c0 210 Gene3D G3DSA:2.60.40.10 16 138 2.3E-15 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_09005 cbc2a443b171f155d4605eb106287723 117 Pfam PF06923 Glucitol operon activator protein (GutM) 5 110 1.0E-35 T 15-10-2018 IPR009693 Glucitol operon activator NJ56_09005 cbc2a443b171f155d4605eb106287723 117 PIRSF PIRSF011474 1 117 7.0E-41 T 15-10-2018 IPR009693 Glucitol operon activator NJ56_14355 15621ce150709f6676d379eccce325fa 114 Pfam PF00892 EamA-like transporter family 10 111 7.9E-12 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_14355 15621ce150709f6676d379eccce325fa 114 Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. 2 114 30.548 T 15-10-2018 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE NJ56_14355 15621ce150709f6676d379eccce325fa 114 SUPERFAMILY SSF103481 32 114 3.14E-16 T 15-10-2018 NJ56_14355 15621ce150709f6676d379eccce325fa 114 Gene3D G3DSA:1.10.3730.20 1 114 1.3E-8 T 15-10-2018 NJ56_08320 39c3b80e13e337be7e815127540718b6 196 Gene3D G3DSA:3.40.50.10490 2 196 2.8E-70 T 15-10-2018 NJ56_08320 39c3b80e13e337be7e815127540718b6 196 Pfam PF13580 SIS domain 9 144 6.4E-33 T 15-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 NJ56_08320 39c3b80e13e337be7e815127540718b6 196 Hamap MF_01157 DnaA initiator-associating protein DiaA [diaA]. 1 196 60.665 T 15-10-2018 IPR023070 DnaA initiator-associating protein NJ56_08320 39c3b80e13e337be7e815127540718b6 196 SUPERFAMILY SSF53697 3 191 7.08E-51 T 15-10-2018 NJ56_16120 8e9813dc03c6194d80a613f64814952b 317 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 47 62 - T 15-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16120 8e9813dc03c6194d80a613f64814952b 317 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 203 216 - T 15-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_16120 8e9813dc03c6194d80a613f64814952b 317 Pfam PF00146 NADH dehydrogenase 16 310 2.1E-47 T 15-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_04705 f3e7a957ad208509a82dfceba0f299f8 354 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 15-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 NJ56_04705 f3e7a957ad208509a82dfceba0f299f8 354 SUPERFAMILY SSF51726 2 352 8.2E-122 T 15-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 NJ56_04705 f3e7a957ad208509a82dfceba0f299f8 354 Gene3D G3DSA:3.20.20.210 1 354 6.7E-163 T 15-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 NJ56_04705 f3e7a957ad208509a82dfceba0f299f8 354 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 15-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 NJ56_04705 f3e7a957ad208509a82dfceba0f299f8 354 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.571 T 15-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 NJ56_04705 f3e7a957ad208509a82dfceba0f299f8 354 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 347 9.6E-137 T 15-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 NJ56_04705 f3e7a957ad208509a82dfceba0f299f8 354 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 7.4E-141 T 15-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 NJ56_06680 7d960da214160f530fea082ebc8aaca8 339 SUPERFAMILY SSF161098 89 323 1.1E-22 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_06680 7d960da214160f530fea082ebc8aaca8 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 336 8.8E-48 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_14010 a8f7ce0c5aa754142b064b4bc3e84b73 220 Pfam PF00929 Exonuclease 5 148 3.1E-14 T 15-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III NJ56_14010 a8f7ce0c5aa754142b064b4bc3e84b73 220 SMART SM00479 2 157 3.1E-34 T 15-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III NJ56_14010 a8f7ce0c5aa754142b064b4bc3e84b73 220 Gene3D G3DSA:3.30.420.10 3 170 1.9E-44 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_14010 a8f7ce0c5aa754142b064b4bc3e84b73 220 SUPERFAMILY SSF53098 1 181 2.13E-33 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_07640 574fcf86f4090f3cc04391ee9173f740 270 SUPERFAMILY SSF46785 5 79 2.04E-12 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_07640 574fcf86f4090f3cc04391ee9173f740 270 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.6E-12 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_07640 574fcf86f4090f3cc04391ee9173f740 270 Gene3D G3DSA:1.10.10.10 4 92 2.6E-14 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_02715 30e4ebf5af28b71cd349cbfe0f4e2705 355 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 343 1.7E-37 T 15-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 NJ56_02715 30e4ebf5af28b71cd349cbfe0f4e2705 355 Gene3D G3DSA:3.40.50.2000 162 319 7.2E-125 T 15-10-2018 NJ56_02715 30e4ebf5af28b71cd349cbfe0f4e2705 355 Gene3D G3DSA:3.40.50.2000 9 161 7.2E-125 T 15-10-2018 NJ56_02715 30e4ebf5af28b71cd349cbfe0f4e2705 355 SUPERFAMILY SSF53756 6 353 2.75E-130 T 15-10-2018 NJ56_02715 30e4ebf5af28b71cd349cbfe0f4e2705 355 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 347 3.2E-116 T 15-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02715 30e4ebf5af28b71cd349cbfe0f4e2705 355 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 8 353 35.437 T 15-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02715 30e4ebf5af28b71cd349cbfe0f4e2705 355 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 9 145 8.4E-48 T 15-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_05030 78959427baae2ed1e797523266702f54 233 Gene3D G3DSA:2.60.40.10 24 154 2.5E-24 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_05030 78959427baae2ed1e797523266702f54 233 SUPERFAMILY SSF49354 22 137 5.49E-8 T 15-10-2018 IPR008962 PapD-like superfamily NJ56_17165 b296b223e1d9a2e8d3cd90a0e0f8e5ad 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 21 169 2.6E-39 T 15-10-2018 IPR006512 YidE/YbjL duplication NJ56_17165 b296b223e1d9a2e8d3cd90a0e0f8e5ad 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 391 541 1.1E-45 T 15-10-2018 IPR006512 YidE/YbjL duplication NJ56_17165 b296b223e1d9a2e8d3cd90a0e0f8e5ad 562 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 557 58.871 T 15-10-2018 IPR023017 Transport protein YbjL, putative NJ56_17165 b296b223e1d9a2e8d3cd90a0e0f8e5ad 562 Pfam PF06826 Predicted Permease Membrane Region 385 554 8.2E-42 T 15-10-2018 IPR006512 YidE/YbjL duplication NJ56_17165 b296b223e1d9a2e8d3cd90a0e0f8e5ad 562 Pfam PF06826 Predicted Permease Membrane Region 17 181 8.2E-39 T 15-10-2018 IPR006512 YidE/YbjL duplication NJ56_17165 b296b223e1d9a2e8d3cd90a0e0f8e5ad 562 Pfam PF02080 TrkA-C domain 305 372 4.1E-9 T 15-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NJ56_17165 b296b223e1d9a2e8d3cd90a0e0f8e5ad 562 Pfam PF02080 TrkA-C domain 227 278 5.8E-9 T 15-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NJ56_17165 b296b223e1d9a2e8d3cd90a0e0f8e5ad 562 Gene3D G3DSA:3.30.70.1450 299 373 1.1E-6 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_17165 b296b223e1d9a2e8d3cd90a0e0f8e5ad 562 SUPERFAMILY SSF116726 227 282 1.7E-10 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_17165 b296b223e1d9a2e8d3cd90a0e0f8e5ad 562 SUPERFAMILY SSF116726 291 374 1.05E-10 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_17165 b296b223e1d9a2e8d3cd90a0e0f8e5ad 562 Gene3D G3DSA:3.30.70.1450 223 285 2.0E-9 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_03265 d4981d2e0b43b5e941cc22a25002b537 397 Gene3D G3DSA:3.40.50.2000 199 380 2.0E-39 T 15-10-2018 NJ56_03265 d4981d2e0b43b5e941cc22a25002b537 397 Gene3D G3DSA:3.40.50.2000 29 194 3.3E-35 T 15-10-2018 NJ56_03265 d4981d2e0b43b5e941cc22a25002b537 397 SUPERFAMILY SSF53756 35 378 6.75E-73 T 15-10-2018 NJ56_03265 d4981d2e0b43b5e941cc22a25002b537 397 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 109 347 9.4E-42 T 15-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 NJ56_03265 d4981d2e0b43b5e941cc22a25002b537 397 TIGRFAM TIGR02201 heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III 36 376 9.9E-115 T 15-10-2018 IPR011916 Lipopolysaccharide heptosyltransferase III, putative NJ56_06890 005c093df4c61a98b546ab3ed070b12a 194 Pfam PF01914 MarC family integral membrane protein 2 190 4.8E-60 T 15-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 NJ56_06890 005c093df4c61a98b546ab3ed070b12a 194 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 2 188 1.2E-32 T 15-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 NJ56_10815 0b1e4cd072937df8f416f73df1aa5de2 549 SUPERFAMILY SSF161098 271 532 9.68E-38 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_10815 0b1e4cd072937df8f416f73df1aa5de2 549 Gene3D G3DSA:1.10.3720.10 292 544 6.0E-33 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_10815 0b1e4cd072937df8f416f73df1aa5de2 549 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 317 545 1.5E-19 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_10815 0b1e4cd072937df8f416f73df1aa5de2 549 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 281 541 3.2E-76 T 15-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 NJ56_06920 68a0025bbfc1e0d102d474b1fd4a5ee6 477 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 475 9.8E-170 T 15-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 NJ56_06920 68a0025bbfc1e0d102d474b1fd4a5ee6 477 Hamap MF_00484 Glycogen synthase [glgA]. 1 476 45.618 T 15-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 NJ56_06920 68a0025bbfc1e0d102d474b1fd4a5ee6 477 Gene3D G3DSA:3.40.50.2000 3 473 4.4E-188 T 15-10-2018 NJ56_06920 68a0025bbfc1e0d102d474b1fd4a5ee6 477 Gene3D G3DSA:3.40.50.2000 249 458 4.4E-188 T 15-10-2018 NJ56_06920 68a0025bbfc1e0d102d474b1fd4a5ee6 477 SUPERFAMILY SSF53756 3 476 3.21E-115 T 15-10-2018 NJ56_06920 68a0025bbfc1e0d102d474b1fd4a5ee6 477 Pfam PF08323 Starch synthase catalytic domain 2 233 5.6E-71 T 15-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 NJ56_06920 68a0025bbfc1e0d102d474b1fd4a5ee6 477 Pfam PF00534 Glycosyl transferases group 1 289 439 6.1E-13 T 15-10-2018 IPR001296 Glycosyl transferase, family 1 NJ56_06425 cc16363418147c8015aa49dfa2718d5a 137 SUPERFAMILY SSF49764 31 137 6.98E-22 T 15-10-2018 IPR008978 HSP20-like chaperone NJ56_06425 cc16363418147c8015aa49dfa2718d5a 137 Gene3D G3DSA:2.60.40.790 33 137 7.7E-22 T 15-10-2018 IPR008978 HSP20-like chaperone NJ56_06425 cc16363418147c8015aa49dfa2718d5a 137 Pfam PF00011 Hsp20/alpha crystallin family 42 137 5.0E-21 T 15-10-2018 IPR002068 Alpha crystallin/Hsp20 domain NJ56_06425 cc16363418147c8015aa49dfa2718d5a 137 Hamap MF_02000 Small heat shock protein IbpA [ibpA]. 1 137 42.089 T 15-10-2018 IPR023728 Small heat shock protein IbpA NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 293 321 - T 15-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 SUPERFAMILY SSF56059 140 357 1.73E-61 T 15-10-2018 NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 Pfam PF01820 D-ala D-ala ligase N-terminus 5 130 4.8E-31 T 15-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 351 42.654 T 15-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 350 1.3E-113 T 15-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 Gene3D G3DSA:3.30.470.20 129 353 8.2E-87 T 15-10-2018 NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 Gene3D G3DSA:3.40.50.20 1 128 7.2E-45 T 15-10-2018 NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 Gene3D G3DSA:3.30.1490.20 155 224 8.2E-87 T 15-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 107 118 - T 15-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 Pfam PF07478 D-ala D-ala ligase C-terminus 147 348 2.8E-76 T 15-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 SUPERFAMILY SSF52440 3 139 1.44E-36 T 15-10-2018 IPR016185 Pre-ATP-grasp domain superfamily NJ56_13765 cceafdd1b1811aef75ef9390f867b9b1 368 PIRSF PIRSF039102 1 359 1.6E-133 T 15-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_04240 12ea2d5e0e9ef55b86b797c846372a8e 342 Pfam PF13394 4Fe-4S single cluster domain 117 196 7.6E-7 T 15-10-2018 NJ56_04240 12ea2d5e0e9ef55b86b797c846372a8e 342 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 15 335 6.7E-157 T 15-10-2018 IPR022462 Lysine-2,3-aminomutase-like NJ56_04240 12ea2d5e0e9ef55b86b797c846372a8e 342 Gene3D G3DSA:3.20.20.70 51 334 1.2E-87 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_04240 12ea2d5e0e9ef55b86b797c846372a8e 342 TIGRFAM TIGR00238 TIGR00238: KamA family protein 4 328 1.4E-131 T 15-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase NJ56_04240 12ea2d5e0e9ef55b86b797c846372a8e 342 PIRSF PIRSF004911 3 342 1.1E-116 T 15-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase NJ56_04240 12ea2d5e0e9ef55b86b797c846372a8e 342 SUPERFAMILY SSF102114 102 324 1.2E-26 T 15-10-2018 NJ56_04240 12ea2d5e0e9ef55b86b797c846372a8e 342 Pfam PF04055 Radical SAM superfamily 118 230 9.9E-8 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_05610 39e46afa5c6ddbd6c07ff654c72a0403 803 Gene3D G3DSA:2.40.170.20 169 803 7.3E-136 T 15-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NJ56_05610 39e46afa5c6ddbd6c07ff654c72a0403 803 Pfam PF00593 TonB dependent receptor 283 802 1.2E-32 T 15-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel NJ56_05610 39e46afa5c6ddbd6c07ff654c72a0403 803 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 152 1.7E-12 T 15-10-2018 IPR012910 TonB-dependent receptor, plug domain NJ56_05610 39e46afa5c6ddbd6c07ff654c72a0403 803 SUPERFAMILY SSF56935 44 803 9.66E-75 T 15-10-2018 NJ56_05610 39e46afa5c6ddbd6c07ff654c72a0403 803 Gene3D G3DSA:2.170.130.10 41 168 6.2E-42 T 15-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily NJ56_05610 39e46afa5c6ddbd6c07ff654c72a0403 803 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 31 803 8.0E-108 T 15-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 NJ56_05610 39e46afa5c6ddbd6c07ff654c72a0403 803 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 28 803 1.4E-146 T 15-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 NJ56_12925 959509ffb29c5b570c509c54355c0bbf 98 Pfam PF04316 Anti-sigma-28 factor, FlgM 41 89 1.4E-9 T 15-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal NJ56_12925 959509ffb29c5b570c509c54355c0bbf 98 SUPERFAMILY SSF101498 18 89 8.24E-13 T 15-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily NJ56_12925 959509ffb29c5b570c509c54355c0bbf 98 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 91 3.1E-19 T 15-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 NJ56_13325 ccc2e1fb8b133c97057d0bc054e7103c 154 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 130 1.7E-45 T 15-10-2018 IPR009678 Bacteriophage tail completion protein R NJ56_12705 ac33da782932ac5dfb035f77917c8f1e 71 TIGRFAM TIGR03318 YdfZ_fam: putative selenium-binding protein YdfZ 6 70 1.3E-32 T 15-10-2018 IPR017704 Putative selenium-binding protein YdfZ NJ56_12705 ac33da782932ac5dfb035f77917c8f1e 71 Pfam PF14001 YdfZ protein 7 70 5.6E-33 T 15-10-2018 IPR017704 Putative selenium-binding protein YdfZ NJ56_01110 769a74b0a0f048d9ea985323aa4ba6bc 368 Gene3D G3DSA:3.40.50.720 1 248 3.4E-81 T 15-10-2018 NJ56_01110 769a74b0a0f048d9ea985323aa4ba6bc 368 SUPERFAMILY SSF51735 1 248 2.5E-36 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_01110 769a74b0a0f048d9ea985323aa4ba6bc 368 SUPERFAMILY SSF51182 238 364 2.29E-18 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_01110 769a74b0a0f048d9ea985323aa4ba6bc 368 Gene3D G3DSA:2.60.120.10 251 366 9.7E-26 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_01110 769a74b0a0f048d9ea985323aa4ba6bc 368 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 189 3.1E-16 T 15-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 NJ56_14825 1ee418abf920c51531d90b736df78463 154 SUPERFAMILY SSF55136 11 143 2.62E-11 T 15-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily NJ56_14825 1ee418abf920c51531d90b736df78463 154 Pfam PF14526 Integron-associated effector binding protein 12 152 5.1E-18 T 15-10-2018 IPR029441 Integron-associated effector binding protein NJ56_14825 1ee418abf920c51531d90b736df78463 154 SMART SM00871 1 153 7.2E-17 T 15-10-2018 IPR010499 Bacterial transcription activator, effector binding NJ56_14825 1ee418abf920c51531d90b736df78463 154 Gene3D G3DSA:3.20.80.10 4 152 4.4E-35 T 15-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily NJ56_03210 9f284a4176f4592c87f119d624a2dae1 94 Pfam PF07256 Protein of unknown function (DUF1435) 18 90 5.3E-26 T 15-10-2018 IPR009885 Protein of unknown function DUF1435 NJ56_14475 9f05b9b387639290f6154e03fa284129 346 SUPERFAMILY SSF141523 98 235 1.26E-29 T 15-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like NJ56_14475 9f05b9b387639290f6154e03fa284129 346 Pfam PF03734 L,D-transpeptidase catalytic domain 100 235 9.5E-20 T 15-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 NJ56_14475 9f05b9b387639290f6154e03fa284129 346 Gene3D G3DSA:2.40.440.10 23 306 3.4E-85 T 15-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like NJ56_13915 99e6678d3c9516ee3987395064432432 289 Gene3D G3DSA:3.40.630.30 5 127 1.2E-12 T 15-10-2018 NJ56_13915 99e6678d3c9516ee3987395064432432 289 Pfam PF00583 Acetyltransferase (GNAT) family 41 109 2.9E-10 T 15-10-2018 IPR000182 GNAT domain NJ56_13915 99e6678d3c9516ee3987395064432432 289 SUPERFAMILY SSF55729 14 269 1.47E-35 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_10640 bad8d11267862c3f2c6617f5ae0346bc 72 SUPERFAMILY SSF161187 1 70 3.27E-27 T 15-10-2018 NJ56_10640 bad8d11267862c3f2c6617f5ae0346bc 72 Pfam PF07191 zinc-ribbons 4 68 3.4E-28 T 15-10-2018 IPR010807 Protein of unknown function DUF1407 NJ56_10640 bad8d11267862c3f2c6617f5ae0346bc 72 Gene3D G3DSA:2.10.290.10 1 71 3.9E-27 T 15-10-2018 IPR029037 YfgJ-like NJ56_10640 bad8d11267862c3f2c6617f5ae0346bc 72 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 5 68 5.0E-22 T 15-10-2018 IPR010807 Protein of unknown function DUF1407 NJ56_03925 670f138535348815653cc2007467ed9a 117 SUPERFAMILY SSF110857 1 114 5.89E-33 T 15-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily NJ56_03925 670f138535348815653cc2007467ed9a 117 Gene3D G3DSA:3.10.490.10 1 117 1.0E-40 T 15-10-2018 NJ56_03925 670f138535348815653cc2007467ed9a 117 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 109 7.9E-23 T 15-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like NJ56_10820 ed65a1aa755c8db7868ce74834c83dfc 270 Gene3D G3DSA:3.40.50.300 19 266 1.5E-63 T 15-10-2018 NJ56_10820 ed65a1aa755c8db7868ce74834c83dfc 270 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_10820 ed65a1aa755c8db7868ce74834c83dfc 270 Pfam PF00005 ABC transporter 39 195 1.3E-29 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_10820 ed65a1aa755c8db7868ce74834c83dfc 270 SMART SM00382 48 242 3.3E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_10820 ed65a1aa755c8db7868ce74834c83dfc 270 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 24 270 4.5E-118 T 15-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 NJ56_10820 ed65a1aa755c8db7868ce74834c83dfc 270 SUPERFAMILY SSF52540 23 258 7.14E-59 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_12475 b0d843af8b5a7560b7c0c42011668187 361 Pfam PF00303 Thymidylate synthase 17 257 8.8E-16 T 15-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_12475 b0d843af8b5a7560b7c0c42011668187 361 SUPERFAMILY SSF55831 2 257 1.06E-30 T 15-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_12475 b0d843af8b5a7560b7c0c42011668187 361 Gene3D G3DSA:3.30.572.10 9 269 2.3E-34 T 15-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 NJ56_09040 88e02a211c7921425bc06c4285b5fd2a 43 SUPERFAMILY SSF56349 5 39 4.41E-6 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_13990 5c57157af1be1b188f99981d452f60e3 107 Pfam PF07130 YebG protein 1 74 3.5E-35 T 15-10-2018 IPR009813 Uncharacterised protein family YebG NJ56_13990 5c57157af1be1b188f99981d452f60e3 107 Gene3D G3DSA:1.10.10.710 21 98 7.9E-14 T 15-10-2018 IPR038627 YebG-like superfamily NJ56_14085 63f2b0e26c93ed6987a22f5386375dfc 219 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 10 210 2.0E-94 T 15-10-2018 IPR008517 Protein of unknown function DUF799 NJ56_14085 63f2b0e26c93ed6987a22f5386375dfc 219 Gene3D G3DSA:3.40.50.10610 23 190 1.4E-65 T 15-10-2018 NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 SUPERFAMILY SSF52540 70 600 1.58E-111 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 Pfam PF04408 Helicase associated domain (HA2) 462 552 2.1E-18 T 15-10-2018 IPR007502 Helicase-associated domain GO:0004386 NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 Gene3D G3DSA:3.40.50.300 31 248 2.9E-73 T 15-10-2018 NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 Pfam PF00271 Helicase conserved C-terminal domain 282 399 3.6E-11 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 Pfam PF11898 Domain of unknown function (DUF3418) 708 1292 1.1E-236 T 15-10-2018 IPR024590 RNA helicase HrpA, C-terminal NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 9 1292 0.0 T 15-10-2018 IPR010222 RNA helicase HrpA GO:0004004 NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 Gene3D G3DSA:1.20.120.1080 445 546 7.5E-20 T 15-10-2018 NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 SMART SM00487 71 255 1.7E-25 T 15-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 SMART SM00490 300 400 1.3E-15 T 15-10-2018 IPR001650 Helicase, C-terminal NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 Pfam PF00270 DEAD/DEAH box helicase 81 229 3.5E-6 T 15-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 SMART SM00847 460 554 2.4E-37 T 15-10-2018 IPR007502 Helicase-associated domain GO:0004386 NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 617 693 1.8E-18 T 15-10-2018 IPR011709 Domain of unknown function DUF1605 NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 SMART SM00382 88 380 5.7E-6 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_14850 5fc00819adca6bfed666c16d9f28ea9b 1295 Gene3D G3DSA:3.40.50.300 249 417 3.8E-56 T 15-10-2018 NJ56_01550 9d53afedd6cd0175d37ad9653c87c872 356 Pfam PF02547 Queuosine biosynthesis protein 4 343 1.0E-130 T 15-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 NJ56_01550 9d53afedd6cd0175d37ad9653c87c872 356 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 344 46.911 T 15-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 NJ56_01550 9d53afedd6cd0175d37ad9653c87c872 356 Gene3D G3DSA:2.40.10.240 64 163 1.8E-116 T 15-10-2018 NJ56_01550 9d53afedd6cd0175d37ad9653c87c872 356 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 343 2.5E-157 T 15-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 NJ56_01550 9d53afedd6cd0175d37ad9653c87c872 356 SUPERFAMILY SSF111337 1 343 3.14E-137 T 15-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 NJ56_01550 9d53afedd6cd0175d37ad9653c87c872 356 Gene3D G3DSA:3.40.1780.10 14 343 1.8E-116 T 15-10-2018 NJ56_15285 4adfed50290064e64ff93c1646ebd6a6 321 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 107 121 - T 15-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 NJ56_15285 4adfed50290064e64ff93c1646ebd6a6 321 SUPERFAMILY SSF55174 5 98 2.21E-12 T 15-10-2018 NJ56_15285 4adfed50290064e64ff93c1646ebd6a6 321 Pfam PF01479 S4 domain 4 44 1.6E-12 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_15285 4adfed50290064e64ff93c1646ebd6a6 321 Pfam PF00849 RNA pseudouridylate synthase 69 199 5.5E-17 T 15-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_15285 4adfed50290064e64ff93c1646ebd6a6 321 SMART SM00363 3 74 8.6E-9 T 15-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_15285 4adfed50290064e64ff93c1646ebd6a6 321 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 233 2.7E-62 T 15-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 NJ56_15285 4adfed50290064e64ff93c1646ebd6a6 321 Gene3D G3DSA:3.30.2350.10 63 251 5.3E-53 T 15-10-2018 NJ56_15285 4adfed50290064e64ff93c1646ebd6a6 321 Gene3D G3DSA:3.10.290.10 1 60 1.2E-22 T 15-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 NJ56_15285 4adfed50290064e64ff93c1646ebd6a6 321 SUPERFAMILY SSF55120 69 233 1.5E-44 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_06765 8b39c86d36215a9664f64046a118ea58 66 SUPERFAMILY SSF55331 2 63 2.82E-23 T 15-10-2018 IPR014347 Tautomerase/MIF superfamily NJ56_06765 8b39c86d36215a9664f64046a118ea58 66 Gene3D G3DSA:3.30.429.10 2 65 1.7E-26 T 15-10-2018 IPR014347 Tautomerase/MIF superfamily NJ56_06765 8b39c86d36215a9664f64046a118ea58 66 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 64 1.2E-29 T 15-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 NJ56_06765 8b39c86d36215a9664f64046a118ea58 66 Pfam PF01361 Tautomerase enzyme 2 61 2.2E-24 T 15-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 NJ56_00660 dd5ebc2590d6aeaa7e0b08c5c84f13de 226 Pfam PF01467 Cytidylyltransferase-like 18 198 1.8E-35 T 15-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NJ56_00660 dd5ebc2590d6aeaa7e0b08c5c84f13de 226 SUPERFAMILY SSF52374 16 224 3.44E-58 T 15-10-2018 NJ56_00660 dd5ebc2590d6aeaa7e0b08c5c84f13de 226 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 17 79 2.8E-12 T 15-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NJ56_00660 dd5ebc2590d6aeaa7e0b08c5c84f13de 226 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 18 223 1.0E-57 T 15-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 NJ56_00660 dd5ebc2590d6aeaa7e0b08c5c84f13de 226 Gene3D G3DSA:3.40.50.620 14 224 4.1E-68 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_00660 dd5ebc2590d6aeaa7e0b08c5c84f13de 226 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 14 224 32.006 T 15-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 NJ56_12900 fea85ee3453a07c461b361123c7adb7c 547 SUPERFAMILY SSF52743 209 541 1.02E-64 T 15-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 NJ56_12900 fea85ee3453a07c461b361123c7adb7c 547 Pfam PF00082 Subtilase family 219 525 6.9E-36 T 15-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 NJ56_12900 fea85ee3453a07c461b361123c7adb7c 547 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 224 235 - T 15-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site NJ56_12900 fea85ee3453a07c461b361123c7adb7c 547 Gene3D G3DSA:3.40.50.200 179 541 2.9E-78 T 15-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 NJ56_12900 fea85ee3453a07c461b361123c7adb7c 547 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 267 277 - T 15-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site NJ56_12900 fea85ee3453a07c461b361123c7adb7c 547 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 468 478 - T 15-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site NJ56_12900 fea85ee3453a07c461b361123c7adb7c 547 PRINTS PR00723 Subtilisin serine protease family (S8) signature 219 238 1.6E-16 T 15-10-2018 IPR015500 Peptidase S8, subtilisin-related NJ56_12900 fea85ee3453a07c461b361123c7adb7c 547 PRINTS PR00723 Subtilisin serine protease family (S8) signature 467 483 1.6E-16 T 15-10-2018 IPR015500 Peptidase S8, subtilisin-related NJ56_12900 fea85ee3453a07c461b361123c7adb7c 547 PRINTS PR00723 Subtilisin serine protease family (S8) signature 263 276 1.6E-16 T 15-10-2018 IPR015500 Peptidase S8, subtilisin-related NJ56_16050 e5631e0f2b71d7d7e084be62551604ed 90 Pfam PF10762 Protein of unknown function (DUF2583) 1 87 4.6E-46 T 15-10-2018 IPR019698 Protein of unknown function DUF2583 NJ56_17310 a2a22090f6b3dba990c2d75b76e79e1f 213 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 199 8.8E-45 T 15-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 NJ56_17310 a2a22090f6b3dba990c2d75b76e79e1f 213 Gene3D G3DSA:3.40.50.300 4 213 2.0E-60 T 15-10-2018 NJ56_17310 a2a22090f6b3dba990c2d75b76e79e1f 213 PRINTS PR00988 Uridine kinase signature 8 25 3.1E-37 T 15-10-2018 NJ56_17310 a2a22090f6b3dba990c2d75b76e79e1f 213 PRINTS PR00988 Uridine kinase signature 87 102 3.1E-37 T 15-10-2018 NJ56_17310 a2a22090f6b3dba990c2d75b76e79e1f 213 PRINTS PR00988 Uridine kinase signature 157 168 3.1E-37 T 15-10-2018 NJ56_17310 a2a22090f6b3dba990c2d75b76e79e1f 213 PRINTS PR00988 Uridine kinase signature 143 153 3.1E-37 T 15-10-2018 NJ56_17310 a2a22090f6b3dba990c2d75b76e79e1f 213 PRINTS PR00988 Uridine kinase signature 42 53 3.1E-37 T 15-10-2018 NJ56_17310 a2a22090f6b3dba990c2d75b76e79e1f 213 PRINTS PR00988 Uridine kinase signature 179 192 3.1E-37 T 15-10-2018 NJ56_17310 a2a22090f6b3dba990c2d75b76e79e1f 213 TIGRFAM TIGR00235 udk: uridine kinase 6 213 7.2E-95 T 15-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 NJ56_17310 a2a22090f6b3dba990c2d75b76e79e1f 213 Hamap MF_00551 Uridine kinase [udk]. 5 213 40.687 T 15-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 NJ56_17310 a2a22090f6b3dba990c2d75b76e79e1f 213 SUPERFAMILY SSF52540 8 205 9.98E-50 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09320 6fbdff29981e632775db31e4b06368ad 299 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 10 299 3.5E-119 T 15-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 NJ56_09320 6fbdff29981e632775db31e4b06368ad 299 Pfam PF00589 Phage integrase family 114 285 2.8E-55 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_09320 6fbdff29981e632775db31e4b06368ad 299 Gene3D G3DSA:1.10.150.130 5 100 5.8E-22 T 15-10-2018 IPR010998 Integrase/recombinase, N-terminal NJ56_09320 6fbdff29981e632775db31e4b06368ad 299 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 91 4.7E-24 T 15-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 NJ56_09320 6fbdff29981e632775db31e4b06368ad 299 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 299 59.569 T 15-10-2018 IPR023009 Tyrosine recombinase XerC/XerD NJ56_09320 6fbdff29981e632775db31e4b06368ad 299 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 5 299 63.754 T 15-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 NJ56_09320 6fbdff29981e632775db31e4b06368ad 299 SUPERFAMILY SSF56349 107 297 3.83E-58 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_09320 6fbdff29981e632775db31e4b06368ad 299 SUPERFAMILY SSF47823 5 101 4.71E-37 T 15-10-2018 NJ56_09320 6fbdff29981e632775db31e4b06368ad 299 Gene3D G3DSA:1.10.443.10 111 293 1.9E-78 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_00650 676cfcd17c48efb7c2cfaa4db2ea6607 192 Pfam PF04390 Lipopolysaccharide-assembly 43 159 5.4E-14 T 15-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 NJ56_00650 676cfcd17c48efb7c2cfaa4db2ea6607 192 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 5 164 27.712 T 15-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 NJ56_00650 676cfcd17c48efb7c2cfaa4db2ea6607 192 Gene3D G3DSA:3.30.160.150 16 169 1.5E-62 T 15-10-2018 NJ56_04245 3fd4a0cd0fea58e27acd450dd710f040 114 Pfam PF13698 Domain of unknown function (DUF4156) 23 113 8.4E-33 T 15-10-2018 IPR025294 Protein of unknown function DUF4156 NJ56_14640 b8d1d2982604682738eb8ea5a9d5cb8e 196 Pfam PF06930 Protein of unknown function (DUF1282) 8 179 1.3E-46 T 15-10-2018 IPR009698 Protein of unknown function DUF1282 NJ56_00955 23703dccda28dd201ea6470018db30ff 176 SUPERFAMILY SSF49401 36 176 1.24E-27 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_00955 23703dccda28dd201ea6470018db30ff 176 Gene3D G3DSA:2.60.40.1090 24 175 1.4E-23 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_00955 23703dccda28dd201ea6470018db30ff 176 Pfam PF00419 Fimbrial protein 29 176 1.5E-7 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_07690 c27c22ef8b455282fd6d5a84c97cc901 538 Gene3D G3DSA:2.40.50.230 353 444 7.2E-12 T 15-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily NJ56_07690 c27c22ef8b455282fd6d5a84c97cc901 538 Pfam PF05954 Phage late control gene D protein (GPD) 62 299 3.1E-9 T 15-10-2018 NJ56_07690 c27c22ef8b455282fd6d5a84c97cc901 538 SUPERFAMILY SSF69279 17 177 7.37E-12 T 15-10-2018 NJ56_07690 c27c22ef8b455282fd6d5a84c97cc901 538 SUPERFAMILY SSF69255 359 439 3.14E-15 T 15-10-2018 NJ56_16035 fd1aa6950d0c4e2764145d56027a2a7b 207 Pfam PF03550 Outer membrane lipoprotein LolB 51 204 6.6E-50 T 15-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 NJ56_16035 fd1aa6950d0c4e2764145d56027a2a7b 207 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 7 205 3.2E-76 T 15-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 NJ56_16035 fd1aa6950d0c4e2764145d56027a2a7b 207 Gene3D G3DSA:2.50.20.10 30 207 3.6E-63 T 15-10-2018 NJ56_16035 fd1aa6950d0c4e2764145d56027a2a7b 207 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 6 206 29.824 T 15-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 NJ56_16035 fd1aa6950d0c4e2764145d56027a2a7b 207 SUPERFAMILY SSF89392 37 206 5.89E-58 T 15-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX NJ56_07655 bb667548d7729196d0bf2f94de4b784d 149 Pfam PF06841 T4-like virus tail tube protein gp19 16 144 7.2E-34 T 15-10-2018 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 NJ56_07655 bb667548d7729196d0bf2f94de4b784d 149 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 11 147 3.8E-36 T 15-10-2018 IPR011747 Conserved hypothetical protein CHP02241 NJ56_00900 39887b9932e141a91c175bd83f44e18f 112 SUPERFAMILY SSF103481 31 111 2.88E-11 T 15-10-2018 NJ56_00900 39887b9932e141a91c175bd83f44e18f 112 Pfam PF00892 EamA-like transporter family 5 110 4.6E-7 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_06785 8b90c93660e5188b812a0b6badf266c4 310 Gene3D G3DSA:1.10.10.10 5 88 1.7E-22 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_06785 8b90c93660e5188b812a0b6badf266c4 310 SUPERFAMILY SSF46785 5 114 2.16E-21 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_06785 8b90c93660e5188b812a0b6badf266c4 310 Gene3D G3DSA:3.40.190.10 94 294 3.7E-51 T 15-10-2018 NJ56_06785 8b90c93660e5188b812a0b6badf266c4 310 SUPERFAMILY SSF53850 93 300 1.03E-39 T 15-10-2018 NJ56_06785 8b90c93660e5188b812a0b6badf266c4 310 Pfam PF03466 LysR substrate binding domain 92 296 1.0E-35 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_06785 8b90c93660e5188b812a0b6badf266c4 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.5E-18 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_06785 8b90c93660e5188b812a0b6badf266c4 310 Gene3D G3DSA:3.40.190.10 166 267 3.7E-51 T 15-10-2018 NJ56_16015 690cc1ce53d9837ddb07effa0fdcb86f 133 Pfam PF04247 Invasion gene expression up-regulator, SirB 5 126 3.0E-45 T 15-10-2018 IPR007360 Invasion gene expression up-regulator, SirB NJ56_16015 690cc1ce53d9837ddb07effa0fdcb86f 133 PIRSF PIRSF005610 1 125 9.5E-29 T 15-10-2018 IPR007360 Invasion gene expression up-regulator, SirB NJ56_12055 57f52045c8a9c5b1c0cb5626b7d2a7c3 116 Pfam PF01844 HNH endonuclease 66 110 3.9E-14 T 15-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 NJ56_12055 57f52045c8a9c5b1c0cb5626b7d2a7c3 116 Gene3D G3DSA:3.30.40.60 29 116 3.2E-9 T 15-10-2018 NJ56_12055 57f52045c8a9c5b1c0cb5626b7d2a7c3 116 SMART SM00507 53 107 7.5E-13 T 15-10-2018 IPR003615 HNH nuclease NJ56_06430 00ebd34c551c996d27fe9758abb067c1 152 Gene3D G3DSA:2.60.40.790 32 135 3.6E-20 T 15-10-2018 IPR008978 HSP20-like chaperone NJ56_06430 00ebd34c551c996d27fe9758abb067c1 152 Pfam PF00011 Hsp20/alpha crystallin family 39 134 3.4E-16 T 15-10-2018 IPR002068 Alpha crystallin/Hsp20 domain NJ56_06430 00ebd34c551c996d27fe9758abb067c1 152 Hamap MF_02001 Small heat shock protein IbpB [ibpB]. 1 146 46.068 T 15-10-2018 IPR022848 Small heat shock protein IbpB NJ56_06430 00ebd34c551c996d27fe9758abb067c1 152 SUPERFAMILY SSF49764 31 134 4.53E-19 T 15-10-2018 IPR008978 HSP20-like chaperone NJ56_08225 69eaf08588e8abf0089e92c76648ee5b 419 SUPERFAMILY SSF55205 1 418 5.07E-147 T 15-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 NJ56_08225 69eaf08588e8abf0089e92c76648ee5b 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 415 5.2E-185 T 15-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_08225 69eaf08588e8abf0089e92c76648ee5b 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 44.436 T 15-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 NJ56_08225 69eaf08588e8abf0089e92c76648ee5b 419 Gene3D G3DSA:3.65.10.10 7 413 4.0E-174 T 15-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 NJ56_08225 69eaf08588e8abf0089e92c76648ee5b 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 406 2.0E-126 T 15-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 NJ56_08225 69eaf08588e8abf0089e92c76648ee5b 419 Gene3D G3DSA:3.65.10.10 21 228 4.0E-174 T 15-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 NJ56_13200 aa030c61679f0f9b989b7fcaf2ddb659 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 9.8E-11 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_13200 aa030c61679f0f9b989b7fcaf2ddb659 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 9.8E-11 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_13200 aa030c61679f0f9b989b7fcaf2ddb659 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 9.8E-11 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_13200 aa030c61679f0f9b989b7fcaf2ddb659 218 SMART SM00448 2 115 2.8E-28 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_13200 aa030c61679f0f9b989b7fcaf2ddb659 218 SUPERFAMILY SSF52172 3 131 1.08E-32 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_13200 aa030c61679f0f9b989b7fcaf2ddb659 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 2.7E-19 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_13200 aa030c61679f0f9b989b7fcaf2ddb659 218 SUPERFAMILY SSF46894 135 210 2.14E-19 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_13200 aa030c61679f0f9b989b7fcaf2ddb659 218 Pfam PF00072 Response regulator receiver domain 4 116 2.0E-29 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_13200 aa030c61679f0f9b989b7fcaf2ddb659 218 SMART SM00421 146 203 2.1E-18 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_13200 aa030c61679f0f9b989b7fcaf2ddb659 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_13200 aa030c61679f0f9b989b7fcaf2ddb659 218 Gene3D G3DSA:3.40.50.12740 2 209 1.2E-58 T 15-10-2018 NJ56_15855 201dc267bfca2571f1f63ded388a124a 247 Pfam PF01709 Transcriptional regulator 5 236 5.7E-93 T 15-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_15855 201dc267bfca2571f1f63ded388a124a 247 SUPERFAMILY SSF75625 3 245 9.03E-96 T 15-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_15855 201dc267bfca2571f1f63ded388a124a 247 Gene3D G3DSA:3.30.70.980 130 205 4.2E-59 T 15-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_15855 201dc267bfca2571f1f63ded388a124a 247 Gene3D G3DSA:3.30.70.980 85 236 4.2E-59 T 15-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_15855 201dc267bfca2571f1f63ded388a124a 247 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 1.2E-104 T 15-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_15855 201dc267bfca2571f1f63ded388a124a 247 Gene3D G3DSA:1.10.10.200 1 81 1.8E-34 T 15-10-2018 IPR017856 Integrase-like, N-terminal NJ56_15855 201dc267bfca2571f1f63ded388a124a 247 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 36.089 T 15-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_17555 0249cb5f6740e66d95e35fa9334b391d 305 SUPERFAMILY SSF161098 85 274 5.63E-28 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17555 0249cb5f6740e66d95e35fa9334b391d 305 Gene3D G3DSA:1.10.3720.10 81 282 1.0E-24 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17555 0249cb5f6740e66d95e35fa9334b391d 305 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 33 282 5.3E-77 T 15-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 NJ56_17555 0249cb5f6740e66d95e35fa9334b391d 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 272 2.4E-8 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_06555 11210ccd809e5187c9a8ccc8af7d74ac 195 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 15-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 NJ56_06555 11210ccd809e5187c9a8ccc8af7d74ac 195 Gene3D G3DSA:2.20.25.90 44 105 1.2E-16 T 15-10-2018 NJ56_06555 11210ccd809e5187c9a8ccc8af7d74ac 195 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 103 1.1E-19 T 15-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_06555 11210ccd809e5187c9a8ccc8af7d74ac 195 Pfam PF00384 Molybdopterin oxidoreductase 107 145 1.2E-6 T 15-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_06555 11210ccd809e5187c9a8ccc8af7d74ac 195 SUPERFAMILY SSF53706 35 195 1.83E-57 T 15-10-2018 NJ56_06555 11210ccd809e5187c9a8ccc8af7d74ac 195 SMART SM00926 43 104 1.9E-22 T 15-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_06555 11210ccd809e5187c9a8ccc8af7d74ac 195 Gene3D G3DSA:3.40.50.740 107 195 4.6E-35 T 15-10-2018 NJ56_08945 2599865dd37ae31decef1208ff04ce1b 398 Gene3D G3DSA:3.60.120.10 5 392 1.6E-127 T 15-10-2018 IPR005801 ADC synthase GO:0009058 NJ56_08945 2599865dd37ae31decef1208ff04ce1b 398 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 107 389 3.0E-96 T 15-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 NJ56_08945 2599865dd37ae31decef1208ff04ce1b 398 Pfam PF00425 chorismate binding enzyme 127 381 2.7E-76 T 15-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal NJ56_08945 2599865dd37ae31decef1208ff04ce1b 398 SUPERFAMILY SSF56322 43 391 3.14E-98 T 15-10-2018 IPR005801 ADC synthase GO:0009058 NJ56_04130 82b7a61939c30545301900e3882b1eb2 385 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 199 210 - T 15-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NJ56_04130 82b7a61939c30545301900e3882b1eb2 385 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 7 321 51.298 T 15-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 NJ56_04130 82b7a61939c30545301900e3882b1eb2 385 Pfam PF13484 4Fe-4S double cluster binding domain 198 262 1.8E-18 T 15-10-2018 NJ56_04130 82b7a61939c30545301900e3882b1eb2 385 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 14 354 1.1E-149 T 15-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 NJ56_04130 82b7a61939c30545301900e3882b1eb2 385 Pfam PF08331 Domain of unknown function (DUF1730) 62 146 7.5E-23 T 15-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 NJ56_04130 82b7a61939c30545301900e3882b1eb2 385 SUPERFAMILY SSF46548 145 262 3.19E-19 T 15-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 NJ56_12625 fafad2b4c2bda873008229be1f19a5d8 512 SMART SM00387 418 507 4.6E-7 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_12625 fafad2b4c2bda873008229be1f19a5d8 512 Gene3D G3DSA:3.30.565.10 384 507 2.1E-27 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_12625 fafad2b4c2bda873008229be1f19a5d8 512 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 423 505 2.9E-7 T 15-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase NJ56_12625 fafad2b4c2bda873008229be1f19a5d8 512 Pfam PF05231 MASE1 10 280 8.5E-34 T 15-10-2018 IPR007895 MASE1 NJ56_12625 fafad2b4c2bda873008229be1f19a5d8 512 SUPERFAMILY SSF55874 385 504 1.83E-17 T 15-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NJ56_12625 fafad2b4c2bda873008229be1f19a5d8 512 Pfam PF07730 Histidine kinase 315 379 2.2E-14 T 15-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 NJ56_08685 4414b2247ce7dcbd8eca877ea98eeef6 476 SUPERFAMILY SSF53613 12 310 1.71E-56 T 15-10-2018 IPR029056 Ribokinase-like NJ56_08685 4414b2247ce7dcbd8eca877ea98eeef6 476 Gene3D G3DSA:3.40.50.620 317 475 7.2E-39 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_08685 4414b2247ce7dcbd8eca877ea98eeef6 476 Gene3D G3DSA:3.40.1190.20 2 309 5.6E-110 T 15-10-2018 IPR029056 Ribokinase-like NJ56_08685 4414b2247ce7dcbd8eca877ea98eeef6 476 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 43.221 T 15-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 NJ56_08685 4414b2247ce7dcbd8eca877ea98eeef6 476 Pfam PF00294 pfkB family carbohydrate kinase 11 305 5.3E-53 T 15-10-2018 IPR011611 Carbohydrate kinase PfkB NJ56_08685 4414b2247ce7dcbd8eca877ea98eeef6 476 SUPERFAMILY SSF52374 340 470 2.67E-21 T 15-10-2018 NJ56_08685 4414b2247ce7dcbd8eca877ea98eeef6 476 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 6 312 1.9E-127 T 15-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 NJ56_08685 4414b2247ce7dcbd8eca877ea98eeef6 476 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 331 472 6.3E-63 T 15-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 NJ56_08685 4414b2247ce7dcbd8eca877ea98eeef6 476 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 1.4E-17 T 15-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NJ56_08685 4414b2247ce7dcbd8eca877ea98eeef6 476 Pfam PF01467 Cytidylyltransferase-like 345 469 9.2E-15 T 15-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NJ56_08685 4414b2247ce7dcbd8eca877ea98eeef6 476 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 15-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 NJ56_04345 2e21dba789dbfaff44f553124091afb8 140 Pfam PF00717 Peptidase S24-like 58 118 1.4E-9 T 15-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C NJ56_04345 2e21dba789dbfaff44f553124091afb8 140 SUPERFAMILY SSF51306 14 137 4.53E-33 T 15-10-2018 IPR036286 LexA/Signal peptidase-like superfamily NJ56_04345 2e21dba789dbfaff44f553124091afb8 140 Gene3D G3DSA:2.10.109.10 25 139 7.2E-43 T 15-10-2018 NJ56_04345 2e21dba789dbfaff44f553124091afb8 140 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 52 62 3.7E-6 T 15-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NJ56_04345 2e21dba789dbfaff44f553124091afb8 140 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 63 74 3.7E-6 T 15-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NJ56_04345 2e21dba789dbfaff44f553124091afb8 140 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 91 103 3.7E-6 T 15-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NJ56_14030 7531c481e55c6b7f0c305798018dc0bb 128 SUPERFAMILY SSF81296 30 128 1.05E-27 T 15-10-2018 IPR014756 Immunoglobulin E-set NJ56_14030 7531c481e55c6b7f0c305798018dc0bb 128 Gene3D G3DSA:2.60.40.1220 30 128 3.9E-27 T 15-10-2018 NJ56_14030 7531c481e55c6b7f0c305798018dc0bb 128 Pfam PF04234 CopC domain 31 127 1.8E-24 T 15-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 NJ56_02005 7d9c96a7bbe2e1cf41695a667bb7fbcb 435 SUPERFAMILY SSF103473 7 370 3.66E-39 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_02005 7d9c96a7bbe2e1cf41695a667bb7fbcb 435 Gene3D G3DSA:1.20.1250.20 201 381 4.3E-19 T 15-10-2018 NJ56_02005 7d9c96a7bbe2e1cf41695a667bb7fbcb 435 Gene3D G3DSA:1.20.1250.20 2 188 1.0E-12 T 15-10-2018 NJ56_02005 7d9c96a7bbe2e1cf41695a667bb7fbcb 435 Pfam PF07690 Major Facilitator Superfamily 12 297 1.6E-18 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_03310 46e3a4009fc2858c5d681faa27d612c6 276 Gene3D G3DSA:2.60.120.520 30 142 7.3E-118 T 15-10-2018 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 NJ56_03310 46e3a4009fc2858c5d681faa27d612c6 276 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 276 54.133 T 15-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 NJ56_03310 46e3a4009fc2858c5d681faa27d612c6 276 Pfam PF04962 KduI/IolB family 34 270 1.6E-36 T 15-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 NJ56_03310 46e3a4009fc2858c5d681faa27d612c6 276 SUPERFAMILY SSF51182 1 260 6.23E-103 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_03310 46e3a4009fc2858c5d681faa27d612c6 276 PIRSF PIRSF006625 1 276 3.9E-129 T 15-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 NJ56_03310 46e3a4009fc2858c5d681faa27d612c6 276 Gene3D G3DSA:2.60.120.10 10 262 7.3E-118 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_09710 f0e17a0f75c9714ee8ffce2c1f42aeac 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 188 205 - T 15-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 NJ56_09710 f0e17a0f75c9714ee8ffce2c1f42aeac 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 16 242 5.9E-102 T 15-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 NJ56_09710 f0e17a0f75c9714ee8ffce2c1f42aeac 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 22 242 3.7E-78 T 15-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 NJ56_09710 f0e17a0f75c9714ee8ffce2c1f42aeac 252 SUPERFAMILY SSF64005 15 238 4.58E-87 T 15-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 NJ56_09710 f0e17a0f75c9714ee8ffce2c1f42aeac 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 15 243 39.614 T 15-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 NJ56_09710 f0e17a0f75c9714ee8ffce2c1f42aeac 252 Gene3D G3DSA:3.40.1180.10 5 244 8.1E-91 T 15-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 NJ56_13610 0e07ad51573eb6c09acb3fa8bc6a50b3 307 Pfam PF00704 Glycosyl hydrolases family 18 17 194 8.3E-11 T 15-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 NJ56_13610 0e07ad51573eb6c09acb3fa8bc6a50b3 307 Gene3D G3DSA:3.20.20.80 2 304 1.0E-73 T 15-10-2018 NJ56_13610 0e07ad51573eb6c09acb3fa8bc6a50b3 307 SUPERFAMILY SSF51445 17 278 1.33E-13 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_05930 932ad9f6e7d4488f06b29d681ee81ef7 213 Gene3D G3DSA:3.40.50.2020 1 213 8.0E-77 T 15-10-2018 NJ56_05930 932ad9f6e7d4488f06b29d681ee81ef7 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 1.1E-66 T 15-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_05930 932ad9f6e7d4488f06b29d681ee81ef7 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 35.666 T 15-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_05930 932ad9f6e7d4488f06b29d681ee81ef7 213 Pfam PF00156 Phosphoribosyl transferase domain 51 159 1.0E-11 T 15-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 NJ56_05930 932ad9f6e7d4488f06b29d681ee81ef7 213 SUPERFAMILY SSF53271 2 212 2.98E-49 T 15-10-2018 IPR029057 Phosphoribosyltransferase-like NJ56_09695 0bae8957e2fa7093b90afcfb2a9a456e 241 PIRSF PIRSF005650 4 241 7.3E-90 T 15-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 NJ56_09695 0bae8957e2fa7093b90afcfb2a9a456e 241 Pfam PF00696 Amino acid kinase family 11 219 1.2E-27 T 15-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 NJ56_09695 0bae8957e2fa7093b90afcfb2a9a456e 241 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 44.084 T 15-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 NJ56_09695 0bae8957e2fa7093b90afcfb2a9a456e 241 Gene3D G3DSA:3.40.1160.10 3 241 2.4E-75 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_09695 0bae8957e2fa7093b90afcfb2a9a456e 241 SUPERFAMILY SSF53633 7 239 7.2E-73 T 15-10-2018 IPR036393 Acetylglutamate kinase-like superfamily NJ56_09695 0bae8957e2fa7093b90afcfb2a9a456e 241 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 239 1.2E-103 T 15-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 NJ56_05615 15b37d367573628c9faac20a473319a8 457 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 41.212 T 15-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 NJ56_05615 15b37d367573628c9faac20a473319a8 457 SUPERFAMILY SSF48557 3 456 3.61E-140 T 15-10-2018 IPR008948 L-Aspartase-like GO:0003824 NJ56_05615 15b37d367573628c9faac20a473319a8 457 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 1.1E-208 T 15-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 NJ56_05615 15b37d367573628c9faac20a473319a8 457 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 5.0E-68 T 15-10-2018 NJ56_05615 15b37d367573628c9faac20a473319a8 457 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 5.0E-68 T 15-10-2018 NJ56_05615 15b37d367573628c9faac20a473319a8 457 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 5.0E-68 T 15-10-2018 NJ56_05615 15b37d367573628c9faac20a473319a8 457 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 5.0E-68 T 15-10-2018 NJ56_05615 15b37d367573628c9faac20a473319a8 457 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 5.0E-68 T 15-10-2018 NJ56_05615 15b37d367573628c9faac20a473319a8 457 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 5.0E-68 T 15-10-2018 NJ56_05615 15b37d367573628c9faac20a473319a8 457 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 9.2E-24 T 15-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 NJ56_05615 15b37d367573628c9faac20a473319a8 457 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 2.1E-28 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_05615 15b37d367573628c9faac20a473319a8 457 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 2.1E-28 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_05615 15b37d367573628c9faac20a473319a8 457 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 2.1E-28 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_05615 15b37d367573628c9faac20a473319a8 457 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 2.1E-28 T 15-10-2018 IPR000362 Fumarate lyase family NJ56_05615 15b37d367573628c9faac20a473319a8 457 Gene3D G3DSA:1.20.200.10 108 446 8.7E-149 T 15-10-2018 NJ56_05615 15b37d367573628c9faac20a473319a8 457 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 15-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 NJ56_05615 15b37d367573628c9faac20a473319a8 457 Gene3D G3DSA:1.10.275.10 1 107 9.3E-36 T 15-10-2018 IPR024083 Fumarase/histidase, N-terminal NJ56_05615 15b37d367573628c9faac20a473319a8 457 Pfam PF00206 Lyase 6 301 1.3E-94 T 15-10-2018 IPR022761 Fumarate lyase, N-terminal NJ56_05615 15b37d367573628c9faac20a473319a8 457 Gene3D G3DSA:1.10.40.30 363 433 8.7E-149 T 15-10-2018 NJ56_09350 c1182fb9477458f461e75c0f29cdfe7a 381 Pfam PF02405 Permease MlaE 165 374 4.4E-67 T 15-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 NJ56_09350 c1182fb9477458f461e75c0f29cdfe7a 381 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 134 377 2.2E-71 T 15-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria NJ56_07665 6867888f13a86206d5f1bb1afc34d059 466 Pfam PF17482 Phage tail sheath C-terminal domain 355 461 8.2E-11 T 15-10-2018 IPR020287 Tail sheath protein, C-terminal domain NJ56_07665 6867888f13a86206d5f1bb1afc34d059 466 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 266 350 7.1E-14 T 15-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain NJ56_06165 1936763c02fb23177c468b390dede823 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 313 4.6E-51 T 15-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 NJ56_09740 43319c63edb2ff43a61003f2b4545e74 161 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 149 37.261 T 15-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 NJ56_09740 43319c63edb2ff43a61003f2b4545e74 161 Gene3D G3DSA:3.10.129.10 5 148 2.5E-68 T 15-10-2018 NJ56_09740 43319c63edb2ff43a61003f2b4545e74 161 Pfam PF07977 FabA-like domain 17 141 5.3E-40 T 15-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 NJ56_09740 43319c63edb2ff43a61003f2b4545e74 161 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 8 146 4.0E-60 T 15-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 NJ56_09740 43319c63edb2ff43a61003f2b4545e74 161 SUPERFAMILY SSF54637 10 151 9.06E-51 T 15-10-2018 IPR029069 HotDog domain superfamily NJ56_17890 a586a238b3367bd3a52c6ca215c57521 100 Gene3D G3DSA:1.10.260.40 21 97 7.1E-17 T 15-10-2018 NJ56_17890 a586a238b3367bd3a52c6ca215c57521 100 SUPERFAMILY SSF47413 28 95 9.21E-17 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_17890 a586a238b3367bd3a52c6ca215c57521 100 SMART SM00530 40 95 2.4E-12 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_17890 a586a238b3367bd3a52c6ca215c57521 100 Pfam PF01381 Helix-turn-helix 41 92 1.1E-13 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_02835 83ed8393ac657b47b8ad05b08b9f67d9 553 Gene3D G3DSA:3.40.190.10 113 318 1.4E-33 T 15-10-2018 NJ56_02835 83ed8393ac657b47b8ad05b08b9f67d9 553 SUPERFAMILY SSF46785 4 56 2.59E-6 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_02835 83ed8393ac657b47b8ad05b08b9f67d9 553 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 118 2.4E-43 T 15-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain NJ56_02835 83ed8393ac657b47b8ad05b08b9f67d9 553 SUPERFAMILY SSF53850 117 550 4.52E-65 T 15-10-2018 NJ56_02835 83ed8393ac657b47b8ad05b08b9f67d9 553 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 164 307 5.5E-19 T 15-10-2018 IPR000914 Solute-binding protein family 5 domain NJ56_02835 83ed8393ac657b47b8ad05b08b9f67d9 553 Hamap MF_01449 HTH-type transcriptional regulator SgrR [sgrR]. 1 553 65.396 T 15-10-2018 IPR023767 Transcriptional regulator SgrR NJ56_12635 dbb6ffb124d4a89be23cecf57b6810b6 228 Pfam PF12431 Transcriptional regulator 133 161 1.3E-6 T 15-10-2018 IPR028141 Transcriptional regulator NJ56_12635 dbb6ffb124d4a89be23cecf57b6810b6 228 Gene3D G3DSA:3.40.50.2300 4 149 3.0E-26 T 15-10-2018 NJ56_12635 dbb6ffb124d4a89be23cecf57b6810b6 228 PIRSF PIRSF006171 2 226 4.9E-72 T 15-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 NJ56_12635 dbb6ffb124d4a89be23cecf57b6810b6 228 Pfam PF00072 Response regulator receiver domain 6 117 2.8E-21 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_12635 dbb6ffb124d4a89be23cecf57b6810b6 228 SMART SM00448 4 117 1.8E-25 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_12635 dbb6ffb124d4a89be23cecf57b6810b6 228 SUPERFAMILY SSF52172 3 159 3.13E-31 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_16425 6e107ff827f4aae44af6c3949295ee7d 415 Pfam PF02687 FtsX-like permease family 302 408 8.3E-12 T 15-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 NJ56_16425 6e107ff827f4aae44af6c3949295ee7d 415 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 414 5.6E-156 T 15-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 NJ56_16425 6e107ff827f4aae44af6c3949295ee7d 415 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 6 415 1.3E-206 T 15-10-2018 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0016021|GO:0042953|GO:0042954|GO:0044874 NJ56_16425 6e107ff827f4aae44af6c3949295ee7d 415 Pfam PF12704 MacB-like periplasmic core domain 28 237 9.0E-16 T 15-10-2018 IPR025857 MacB-like periplasmic core domain NJ56_09130 e69d2fd41ca6c05c2bacfae581c39e96 141 Gene3D G3DSA:3.30.420.140 2 138 1.4E-46 T 15-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 NJ56_09130 e69d2fd41ca6c05c2bacfae581c39e96 141 SUPERFAMILY SSF53098 4 138 9.86E-44 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_09130 e69d2fd41ca6c05c2bacfae581c39e96 141 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 139 26.248 T 15-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 NJ56_09130 e69d2fd41ca6c05c2bacfae581c39e96 141 Pfam PF03652 Holliday junction resolvase 5 136 2.6E-43 T 15-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 NJ56_09130 e69d2fd41ca6c05c2bacfae581c39e96 141 SMART SM00732 4 104 7.2E-44 T 15-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 NJ56_09130 e69d2fd41ca6c05c2bacfae581c39e96 141 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 136 1.1E-58 T 15-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 NJ56_00410 7e74a6ec1d6f0c74a9780b894eb0ef42 247 SUPERFAMILY SSF102705 1 246 2.09E-80 T 15-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily NJ56_00410 7e74a6ec1d6f0c74a9780b894eb0ef42 247 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 10 233 1.1E-54 T 15-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 NJ56_00410 7e74a6ec1d6f0c74a9780b894eb0ef42 247 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 246 1.3E-70 T 15-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 NJ56_00410 7e74a6ec1d6f0c74a9780b894eb0ef42 247 Gene3D G3DSA:3.40.1390.30 14 232 3.5E-85 T 15-10-2018 NJ56_00410 7e74a6ec1d6f0c74a9780b894eb0ef42 247 Gene3D G3DSA:3.40.1390.30 97 218 3.5E-85 T 15-10-2018 NJ56_14020 52317d43cf9c443a744c4448735670da 76 SUPERFAMILY SSF46575 1 76 4.05E-35 T 15-10-2018 NJ56_14020 52317d43cf9c443a744c4448735670da 76 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 4 76 2.0E-27 T 15-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_14020 52317d43cf9c443a744c4448735670da 76 Gene3D G3DSA:1.20.58.250 1 76 2.3E-38 T 15-10-2018 IPR036745 DNA polymerase III-theta superfamily GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_14020 52317d43cf9c443a744c4448735670da 76 Pfam PF06440 DNA polymerase III, theta subunit 3 71 1.2E-38 T 15-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_08805 b92913629de31b88a4a834eed3600119 401 Gene3D G3DSA:3.40.640.10 4 261 7.0E-68 T 15-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 NJ56_08805 b92913629de31b88a4a834eed3600119 401 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 394 6.9E-113 T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_08805 b92913629de31b88a4a834eed3600119 401 PIRSF PIRSF001434 1 398 4.4E-115 T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_08805 b92913629de31b88a4a834eed3600119 401 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 205 219 - T 15-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 NJ56_08805 b92913629de31b88a4a834eed3600119 401 SUPERFAMILY SSF53383 26 396 9.68E-89 T 15-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase NJ56_08805 b92913629de31b88a4a834eed3600119 401 Gene3D G3DSA:3.90.1150.10 262 398 1.1E-41 T 15-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 NJ56_08805 b92913629de31b88a4a834eed3600119 401 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 11 397 9.2E-168 T 15-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 NJ56_02650 b7540b496938cf68d81b8d51e11059d4 206 SUPERFAMILY SSF52540 1 190 3.58E-41 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02650 b7540b496938cf68d81b8d51e11059d4 206 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 180 4.0E-64 T 15-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 NJ56_02650 b7540b496938cf68d81b8d51e11059d4 206 Gene3D G3DSA:3.40.50.300 1 205 7.4E-67 T 15-10-2018 NJ56_02650 b7540b496938cf68d81b8d51e11059d4 206 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 192 27.653 T 15-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 NJ56_02650 b7540b496938cf68d81b8d51e11059d4 206 Pfam PF01121 Dephospho-CoA kinase 3 177 1.9E-72 T 15-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 NJ56_16550 7f3eaee928b008b8c80fd81346c2a94d 55 Pfam PF01783 Ribosomal L32p protein family 2 54 1.1E-19 T 15-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_16550 7f3eaee928b008b8c80fd81346c2a94d 55 SUPERFAMILY SSF57829 2 54 1.04E-18 T 15-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 NJ56_16550 7f3eaee928b008b8c80fd81346c2a94d 55 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.225 T 15-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_16550 7f3eaee928b008b8c80fd81346c2a94d 55 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 3.5E-20 T 15-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_14320 4f2d2bb6cd6ee879287439354a68dead 335 Hamap MF_01004 Vitamin B12 import system permease protein BtuC [btuC]. 7 333 32.747 T 15-10-2018 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC GO:0015889|GO:0016020 NJ56_14320 4f2d2bb6cd6ee879287439354a68dead 335 SUPERFAMILY SSF81345 12 330 3.92E-80 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_14320 4f2d2bb6cd6ee879287439354a68dead 335 Pfam PF01032 FecCD transport family 30 330 6.9E-84 T 15-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 NJ56_14320 4f2d2bb6cd6ee879287439354a68dead 335 Gene3D G3DSA:1.10.3470.10 8 332 4.1E-106 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_04330 80349c289b8caad522b14b4c8c2752cb 428 Gene3D G3DSA:1.20.1250.20 6 398 9.0E-24 T 15-10-2018 NJ56_04330 80349c289b8caad522b14b4c8c2752cb 428 Pfam PF07690 Major Facilitator Superfamily 20 272 7.0E-10 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_04330 80349c289b8caad522b14b4c8c2752cb 428 SUPERFAMILY SSF103473 13 410 8.63E-31 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_16960 7bce4a6b04367e786e01db1b2b659504 246 ProSitePatterns PS01087 Radical activating enzymes signature. 18 39 - T 15-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 NJ56_16960 7bce4a6b04367e786e01db1b2b659504 246 Gene3D G3DSA:3.20.20.70 2 246 4.6E-105 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_16960 7bce4a6b04367e786e01db1b2b659504 246 SUPERFAMILY SSF102114 23 211 1.24E-22 T 15-10-2018 NJ56_16960 7bce4a6b04367e786e01db1b2b659504 246 Pfam PF13353 4Fe-4S single cluster domain 16 131 5.0E-18 T 15-10-2018 NJ56_16960 7bce4a6b04367e786e01db1b2b659504 246 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 6 239 1.1E-106 T 15-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 NJ56_16960 7bce4a6b04367e786e01db1b2b659504 246 Pfam PF04055 Radical SAM superfamily 24 178 7.5E-31 T 15-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 NJ56_16960 7bce4a6b04367e786e01db1b2b659504 246 PIRSF PIRSF000371 44 246 3.5E-45 T 15-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 NJ56_16960 7bce4a6b04367e786e01db1b2b659504 246 PIRSF PIRSF000371 2 47 4.8E-11 T 15-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 NJ56_16460 6de04b9b7b5af6db2af1ea8a36662f7b 180 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 4.9E-68 T 15-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA NJ56_16460 6de04b9b7b5af6db2af1ea8a36662f7b 180 SUPERFAMILY SSF53474 1 173 4.56E-6 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_16460 6de04b9b7b5af6db2af1ea8a36662f7b 180 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 50.631 T 15-10-2018 IPR022987 Uncharacterised protein family UPF0227 NJ56_16460 6de04b9b7b5af6db2af1ea8a36662f7b 180 Gene3D G3DSA:3.40.50.1820 1 179 6.2E-18 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_08240 95e06294b928c87f596d22b2fe71b6b6 134 Pfam PF06295 Protein of unknown function (DUF1043) 6 127 3.1E-50 T 15-10-2018 IPR009386 Protein of unknown function DUF1043 NJ56_08240 95e06294b928c87f596d22b2fe71b6b6 134 PIRSF PIRSF006318 1 134 5.4E-52 T 15-10-2018 IPR009386 Protein of unknown function DUF1043 NJ56_03315 0a771250d9a99e26f8d7c52625404f57 392 PIRSF PIRSF038994 3 388 4.9E-125 T 15-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 NJ56_03315 0a771250d9a99e26f8d7c52625404f57 392 Pfam PF01979 Amidohydrolase family 50 383 1.5E-20 T 15-10-2018 IPR006680 Amidohydrolase-related GO:0016787 NJ56_03315 0a771250d9a99e26f8d7c52625404f57 392 SUPERFAMILY SSF51338 10 388 1.61E-14 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_03315 0a771250d9a99e26f8d7c52625404f57 392 SUPERFAMILY SSF51556 54 355 1.83E-89 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_03315 0a771250d9a99e26f8d7c52625404f57 392 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 21 381 6.8E-87 T 15-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 NJ56_03315 0a771250d9a99e26f8d7c52625404f57 392 Gene3D G3DSA:3.20.20.140 54 355 2.9E-117 T 15-10-2018 NJ56_03315 0a771250d9a99e26f8d7c52625404f57 392 Gene3D G3DSA:2.30.40.10 12 382 2.9E-117 T 15-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 NJ56_01740 e344d38de1b7253a675879c9020e31aa 209 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 36.882 T 15-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 NJ56_01740 e344d38de1b7253a675879c9020e31aa 209 PIRSF PIRSF006102 3 209 2.7E-71 T 15-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 NJ56_01740 e344d38de1b7253a675879c9020e31aa 209 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 195 7.1E-63 T 15-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 NJ56_01740 e344d38de1b7253a675879c9020e31aa 209 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 4 206 7.7E-106 T 15-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 NJ56_06590 d548be20d58e3b44db9d50a2e93cf2ed 249 SUPERFAMILY SSF55166 31 248 3.57E-59 T 15-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 NJ56_06590 d548be20d58e3b44db9d50a2e93cf2ed 249 PIRSF PIRSF026671 4 249 6.0E-65 T 15-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 NJ56_06590 d548be20d58e3b44db9d50a2e93cf2ed 249 Gene3D G3DSA:3.30.1380.10 31 249 1.5E-69 T 15-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 NJ56_06590 d548be20d58e3b44db9d50a2e93cf2ed 249 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 33 247 30.989 T 15-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 NJ56_06590 d548be20d58e3b44db9d50a2e93cf2ed 249 Pfam PF01427 D-ala-D-ala dipeptidase 181 248 2.5E-17 T 15-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 NJ56_06590 d548be20d58e3b44db9d50a2e93cf2ed 249 Pfam PF01427 D-ala-D-ala dipeptidase 32 162 3.3E-18 T 15-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 NJ56_00885 ebf90814514582f9363610a5e239f056 116 SMART SM00418 7 85 3.2E-26 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_00885 ebf90814514582f9363610a5e239f056 116 Pfam PF01022 Bacterial regulatory protein, arsR family 14 58 3.9E-12 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_00885 ebf90814514582f9363610a5e239f056 116 SUPERFAMILY SSF46785 2 94 2.02E-21 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_00885 ebf90814514582f9363610a5e239f056 116 Gene3D G3DSA:1.10.10.10 4 93 1.2E-23 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_00885 ebf90814514582f9363610a5e239f056 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 1.0E-23 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_00885 ebf90814514582f9363610a5e239f056 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 40 1.0E-23 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_00885 ebf90814514582f9363610a5e239f056 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 1.0E-23 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_00885 ebf90814514582f9363610a5e239f056 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 1.0E-23 T 15-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NJ56_13830 7830c210a903aa18d199abace39fb3d0 104 Pfam PF10765 Protein of unknown function (DUF2591) 30 97 1.0E-12 T 15-10-2018 IPR019701 Bacteriophage P22, NinX NJ56_00055 f400db646532c6c70ed22ef59bcc06c4 236 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 20 232 9.6E-62 T 15-10-2018 IPR006214 Bax inhibitor 1-related NJ56_08060 83bef30b4ab5afb52e4c30328363e974 489 Gene3D G3DSA:3.40.605.10 27 479 1.3E-180 T 15-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 NJ56_08060 83bef30b4ab5afb52e4c30328363e974 489 Gene3D G3DSA:3.40.309.10 267 456 1.3E-180 T 15-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 NJ56_08060 83bef30b4ab5afb52e4c30328363e974 489 Pfam PF00171 Aldehyde dehydrogenase family 29 483 1.1E-170 T 15-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 NJ56_08060 83bef30b4ab5afb52e4c30328363e974 489 SUPERFAMILY SSF53720 11 487 1.57E-169 T 15-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 NJ56_08060 83bef30b4ab5afb52e4c30328363e974 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 288 299 - T 15-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 NJ56_08060 83bef30b4ab5afb52e4c30328363e974 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 260 267 - T 15-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 NJ56_08060 83bef30b4ab5afb52e4c30328363e974 489 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 36 482 4.4E-206 T 15-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 NJ56_11980 6d5a9fd2423dbf79db3e4a5c5729c48e 339 Gene3D G3DSA:1.10.10.10 3 113 2.1E-12 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_11980 6d5a9fd2423dbf79db3e4a5c5729c48e 339 Pfam PF13730 Helix-turn-helix domain 27 70 3.5E-10 T 15-10-2018 NJ56_16140 033ce1a469483a9f1c40e6593072bf7c 160 ProDom PD021295 MATURATION HYDROGENLYASE FORMATE HYCH LYASE HYCE PROCESSING OXIDOREDUCTASE J COMPONENT 25 157 1.0E-31 T 15-10-2018 IPR010005 Formate hydrogenlyase maturation HycH NJ56_16140 033ce1a469483a9f1c40e6593072bf7c 160 Pfam PF07450 Formate hydrogenlyase maturation protein HycH 25 157 9.2E-51 T 15-10-2018 IPR010005 Formate hydrogenlyase maturation HycH NJ56_15450 db65c50571f732558875a37e3c9d935b 333 Pfam PF00005 ABC transporter 36 192 1.1E-27 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_15450 db65c50571f732558875a37e3c9d935b 333 Gene3D G3DSA:3.40.50.300 13 330 2.1E-96 T 15-10-2018 NJ56_15450 db65c50571f732558875a37e3c9d935b 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 244 308 5.6E-21 T 15-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 NJ56_15450 db65c50571f732558875a37e3c9d935b 333 SUPERFAMILY SSF52540 45 310 6.99E-68 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15450 db65c50571f732558875a37e3c9d935b 333 SMART SM00382 44 250 3.7E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_15450 db65c50571f732558875a37e3c9d935b 333 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_15450 db65c50571f732558875a37e3c9d935b 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 244 326 1.6E-24 T 15-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 PRINTS PR01398 Isochorismatase signature 168 186 8.6E-48 T 15-10-2018 IPR016291 Isochorismatase GO:0008908 NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 PRINTS PR01398 Isochorismatase signature 2 14 8.6E-48 T 15-10-2018 IPR016291 Isochorismatase GO:0008908 NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 PRINTS PR01398 Isochorismatase signature 186 203 8.6E-48 T 15-10-2018 IPR016291 Isochorismatase GO:0008908 NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 PRINTS PR01398 Isochorismatase signature 80 99 8.6E-48 T 15-10-2018 IPR016291 Isochorismatase GO:0008908 NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 PRINTS PR01398 Isochorismatase signature 63 80 8.6E-48 T 15-10-2018 IPR016291 Isochorismatase GO:0008908 NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 PRINTS PR01398 Isochorismatase signature 112 134 8.6E-48 T 15-10-2018 IPR016291 Isochorismatase GO:0008908 NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 SUPERFAMILY SSF47336 220 288 2.36E-7 T 15-10-2018 IPR036736 ACP-like superfamily NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 Pfam PF00550 Phosphopantetheine attachment site 221 279 1.5E-6 T 15-10-2018 IPR009081 Phosphopantetheine binding ACP domain NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 Pfam PF00857 Isochorismatase family 32 200 4.1E-33 T 15-10-2018 IPR000868 Isochorismatase-like GO:0003824 NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 SUPERFAMILY SSF52499 1 208 2.88E-58 T 15-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 Gene3D G3DSA:3.40.50.850 1 207 2.8E-72 T 15-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 PIRSF PIRSF001111 1 291 8.3E-134 T 15-10-2018 IPR016291 Isochorismatase GO:0008908 NJ56_08955 257bf728704f6387c0df7f4c972ef813 294 Gene3D G3DSA:1.10.1200.10 216 289 4.4E-24 T 15-10-2018 IPR036736 ACP-like superfamily NJ56_00595 32695c6110c3a17af0f02edcb3e6bd14 351 Gene3D G3DSA:3.40.50.300 115 321 3.2E-74 T 15-10-2018 NJ56_00595 32695c6110c3a17af0f02edcb3e6bd14 351 Pfam PF02562 PhoH-like protein 118 321 2.8E-94 T 15-10-2018 IPR003714 PhoH-like protein GO:0005524 NJ56_00595 32695c6110c3a17af0f02edcb3e6bd14 351 SUPERFAMILY SSF52540 117 293 2.08E-41 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17575 97af35b8dd46df26a0961f6938d3e83a 82 Pfam PF04226 Transglycosylase associated protein 33 81 2.6E-16 T 15-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 NJ56_16360 a24c58a0c79ed1739be3d06531b4b475 417 Gene3D G3DSA:3.40.718.10 1 417 6.4E-187 T 15-10-2018 NJ56_16360 a24c58a0c79ed1739be3d06531b4b475 417 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 30 413 1.8E-116 T 15-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 NJ56_16360 a24c58a0c79ed1739be3d06531b4b475 417 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 1 417 2.6E-235 T 15-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 NJ56_16360 a24c58a0c79ed1739be3d06531b4b475 417 SUPERFAMILY SSF53659 4 417 4.8E-148 T 15-10-2018 NJ56_16360 a24c58a0c79ed1739be3d06531b4b475 417 SMART SM01329 29 413 8.8E-180 T 15-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 NJ56_16360 a24c58a0c79ed1739be3d06531b4b475 417 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 304 323 - T 15-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 NJ56_05475 0167abf183513b25c2ba62710e711f88 32 Pfam PF08046 IlvGEDA operon leader peptide 1 32 4.7E-22 T 15-10-2018 IPR012567 IlvGEDA operon leader peptide GO:0009082 NJ56_18210 432f194b48cdb3e1453d867b45ac9b51 182 Gene3D G3DSA:3.40.30.10 26 174 2.0E-7 T 15-10-2018 NJ56_18210 432f194b48cdb3e1453d867b45ac9b51 182 Pfam PF13728 F plasmid transfer operon protein 70 159 2.1E-9 T 15-10-2018 IPR039555 F plasmid transfer operon protein NJ56_18210 432f194b48cdb3e1453d867b45ac9b51 182 TIGRFAM TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB 14 173 1.5E-51 T 15-10-2018 IPR014109 Type-F conjugative transfer system pilin assembly thiol-disulphide isomerase TrbB NJ56_18210 432f194b48cdb3e1453d867b45ac9b51 182 SUPERFAMILY SSF52833 70 175 5.83E-9 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_09835 80095395cc9b7510b6892e64c02da213 136 Pfam PF16358 RcsF lipoprotein 39 134 4.0E-53 T 15-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 NJ56_09835 80095395cc9b7510b6892e64c02da213 136 Hamap MF_00976 Outer membrane lipoprotein RcsF [rcsF]. 1 135 37.263 T 15-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 NJ56_09835 80095395cc9b7510b6892e64c02da213 136 Gene3D G3DSA:3.30.110.70 32 136 2.2E-40 T 15-10-2018 NJ56_15880 403e66fbd0855a01c796fb27dcdedd8b 131 Pfam PF01124 MAPEG family 4 120 6.5E-25 T 15-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein NJ56_15880 403e66fbd0855a01c796fb27dcdedd8b 131 SUPERFAMILY SSF161084 4 125 2.88E-30 T 15-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily NJ56_15880 403e66fbd0855a01c796fb27dcdedd8b 131 Gene3D G3DSA:1.20.120.550 1 128 2.4E-25 T 15-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily NJ56_10000 9dbffe4eed9a9744cdd6135e3bcedd20 542 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 24 515 54.069 T 15-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 NJ56_10000 9dbffe4eed9a9744cdd6135e3bcedd20 542 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 27 515 2.8E-241 T 15-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 NJ56_10000 9dbffe4eed9a9744cdd6135e3bcedd20 542 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 28 513 1.8E-211 T 15-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 NJ56_10000 9dbffe4eed9a9744cdd6135e3bcedd20 542 SUPERFAMILY SSF51905 23 355 3.11E-23 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_14240 306e412cd3d30034c354b72010efd7ee 109 Pfam PF07784 Protein of unknown function (DUF1622) 25 101 7.9E-25 T 15-10-2018 IPR012427 Protein of unknown function DUF1622 NJ56_09775 e6a0fdb13ea979e6e97f7c420c912225 289 SUPERFAMILY SSF56399 31 242 4.39E-18 T 15-10-2018 NJ56_09775 e6a0fdb13ea979e6e97f7c420c912225 289 Pfam PF02917 Pertussis toxin, subunit 1 31 199 5.3E-5 T 15-10-2018 IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 NJ56_09775 e6a0fdb13ea979e6e97f7c420c912225 289 Gene3D G3DSA:3.90.210.10 32 282 2.7E-38 T 15-10-2018 NJ56_09330 ed7e93b1662e39a73cdf1aad0b1b7d58 577 Gene3D G3DSA:2.40.50.460 462 576 2.0E-7 T 15-10-2018 NJ56_09330 ed7e93b1662e39a73cdf1aad0b1b7d58 577 Gene3D G3DSA:3.90.1640.30 50 326 2.5E-88 T 15-10-2018 NJ56_09330 ed7e93b1662e39a73cdf1aad0b1b7d58 577 Pfam PF01368 DHH family 74 178 3.2E-8 T 15-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 NJ56_09330 ed7e93b1662e39a73cdf1aad0b1b7d58 577 SUPERFAMILY SSF64182 50 467 8.11E-118 T 15-10-2018 IPR038763 DHH phosphoesterase superfamily NJ56_09330 ed7e93b1662e39a73cdf1aad0b1b7d58 577 Pfam PF02272 DHHA1 domain 322 452 1.8E-27 T 15-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 NJ56_09330 ed7e93b1662e39a73cdf1aad0b1b7d58 577 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 23 573 1.2E-159 T 15-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 NJ56_09330 ed7e93b1662e39a73cdf1aad0b1b7d58 577 Gene3D G3DSA:3.10.310.30 328 458 3.4E-31 T 15-10-2018 NJ56_10475 44cdc3b049acff2a44667b73974a32bd 384 SUPERFAMILY SSF51419 35 267 4.49E-24 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_10475 44cdc3b049acff2a44667b73974a32bd 384 Gene3D G3DSA:3.20.20.10 99 251 1.7E-150 T 15-10-2018 IPR029066 PLP-binding barrel NJ56_10475 44cdc3b049acff2a44667b73974a32bd 384 Pfam PF01168 Alanine racemase, N-terminal domain 33 264 4.0E-18 T 15-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 NJ56_10475 44cdc3b049acff2a44667b73974a32bd 384 Gene3D G3DSA:2.40.37.30 8 380 1.7E-150 T 15-10-2018 NJ56_10030 593953b07bc47bdbe41f9ac1b82a0a42 498 Gene3D G3DSA:3.40.50.300 2 239 8.9E-58 T 15-10-2018 NJ56_10030 593953b07bc47bdbe41f9ac1b82a0a42 498 SUPERFAMILY SSF52540 262 488 1.64E-43 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_10030 593953b07bc47bdbe41f9ac1b82a0a42 498 ProSitePatterns PS00211 ABC transporters family signature. 401 415 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_10030 593953b07bc47bdbe41f9ac1b82a0a42 498 Pfam PF00005 ABC transporter 23 174 1.2E-29 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_10030 593953b07bc47bdbe41f9ac1b82a0a42 498 Pfam PF00005 ABC transporter 274 428 1.3E-22 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_10030 593953b07bc47bdbe41f9ac1b82a0a42 498 SMART SM00382 32 222 1.1E-8 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_10030 593953b07bc47bdbe41f9ac1b82a0a42 498 SMART SM00382 282 477 0.012 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_10030 593953b07bc47bdbe41f9ac1b82a0a42 498 Gene3D G3DSA:3.40.50.300 252 497 1.3E-44 T 15-10-2018 NJ56_10030 593953b07bc47bdbe41f9ac1b82a0a42 498 SUPERFAMILY SSF52540 7 234 1.57E-56 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_12780 a5f87a3ba0af05c3bec4e861209aedca 193 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 1 187 46.498 T 15-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 NJ56_12780 a5f87a3ba0af05c3bec4e861209aedca 193 SUPERFAMILY SSF160930 5 161 1.12E-65 T 15-10-2018 NJ56_12780 a5f87a3ba0af05c3bec4e861209aedca 193 Pfam PF05280 Flagellar transcriptional activator (FlhC) 1 173 7.8E-85 T 15-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 NJ56_12780 a5f87a3ba0af05c3bec4e861209aedca 193 PIRSF PIRSF003159 1 182 5.2E-91 T 15-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 NJ56_12780 a5f87a3ba0af05c3bec4e861209aedca 193 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 1 193 8.0E-108 T 15-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 NJ56_11060 85b6fda24c38b01f6efe326153b70e9f 241 Gene3D G3DSA:3.60.40.10 3 239 2.3E-8 T 15-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 NJ56_11060 85b6fda24c38b01f6efe326153b70e9f 241 SUPERFAMILY SSF81606 5 220 3.27E-8 T 15-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 NJ56_11555 6053a160047da8ac55f8a4590d4b5052 259 Gene3D G3DSA:3.40.190.10 113 213 5.3E-87 T 15-10-2018 NJ56_11555 6053a160047da8ac55f8a4590d4b5052 259 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 4 253 2.0E-95 T 15-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 NJ56_11555 6053a160047da8ac55f8a4590d4b5052 259 SMART SM00062 27 256 8.8E-77 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_11555 6053a160047da8ac55f8a4590d4b5052 259 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 15-10-2018 IPR018313 Solute-binding protein family 3, conserved site NJ56_11555 6053a160047da8ac55f8a4590d4b5052 259 SUPERFAMILY SSF53850 1 257 3.55E-68 T 15-10-2018 NJ56_11555 6053a160047da8ac55f8a4590d4b5052 259 Gene3D G3DSA:3.40.190.10 29 252 5.3E-87 T 15-10-2018 NJ56_11555 6053a160047da8ac55f8a4590d4b5052 259 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 1.5E-63 T 15-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NJ56_04625 8ac28376b617c54bfb0373a68b421abb 290 Pfam PF13614 AAA domain 1 146 9.4E-20 T 15-10-2018 IPR025669 AAA domain NJ56_04625 8ac28376b617c54bfb0373a68b421abb 290 SUPERFAMILY SSF52540 1 277 2.83E-30 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_04625 8ac28376b617c54bfb0373a68b421abb 290 Gene3D G3DSA:3.40.50.300 1 283 7.5E-31 T 15-10-2018 NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 Gene3D G3DSA:2.60.120.260 352 511 2.4E-25 T 15-10-2018 IPR008979 Galactose-binding-like domain superfamily NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 PRINTS PR01440 Cellulose synthase subunit B signature 222 245 2.0E-35 T 15-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 PRINTS PR01440 Cellulose synthase subunit B signature 303 324 2.0E-35 T 15-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 PRINTS PR01440 Cellulose synthase subunit B signature 180 201 2.0E-35 T 15-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 PRINTS PR01440 Cellulose synthase subunit B signature 519 538 2.0E-35 T 15-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 PRINTS PR01440 Cellulose synthase subunit B signature 556 576 2.0E-35 T 15-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 PRINTS PR01440 Cellulose synthase subunit B signature 139 162 2.0E-35 T 15-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 PRINTS PR01440 Cellulose synthase subunit B signature 90 111 2.0E-35 T 15-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 PRINTS PR01440 Cellulose synthase subunit B signature 709 729 2.0E-35 T 15-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 PRINTS PR01440 Cellulose synthase subunit B signature 386 407 2.0E-35 T 15-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 Pfam PF03170 Bacterial cellulose synthase subunit 63 670 6.5E-220 T 15-10-2018 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 NJ56_06730 ca2deb1a08c81ce7dfc83b9d5421f0d7 770 Gene3D G3DSA:2.60.120.260 62 193 5.6E-24 T 15-10-2018 IPR008979 Galactose-binding-like domain superfamily NJ56_05765 6a919e375da1b24ab35829d8eb97786e 202 Pfam PF07305 Protein of unknown function (DUF1454) 18 201 1.4E-80 T 15-10-2018 IPR009918 Protein of unknown function DUF1454 NJ56_16725 8a32170eba0f1a2295d71049bdfe5dd6 711 Pfam PF13515 Fusaric acid resistance protein-like 407 526 1.9E-24 T 15-10-2018 NJ56_16725 8a32170eba0f1a2295d71049bdfe5dd6 711 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 10 707 0.0 T 15-10-2018 IPR010019 Integral membrane protein, YccS NJ56_16725 8a32170eba0f1a2295d71049bdfe5dd6 711 Pfam PF12805 FUSC-like inner membrane protein yccS 68 347 4.6E-111 T 15-10-2018 IPR032692 Integral membrane protein YccS, N-terminal NJ56_16725 8a32170eba0f1a2295d71049bdfe5dd6 711 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 10 706 8.9E-296 T 15-10-2018 IPR010020 Integral membrane protein, YccS/YhfK NJ56_03300 1a600bf611c64e1298df939dd57d3b67 352 Gene3D G3DSA:1.50.10.10 8 352 2.9E-103 T 15-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 NJ56_03300 1a600bf611c64e1298df939dd57d3b67 352 Pfam PF07470 Glycosyl Hydrolase Family 88 18 350 1.2E-70 T 15-10-2018 IPR010905 Glycosyl hydrolase, family 88 NJ56_03300 1a600bf611c64e1298df939dd57d3b67 352 SUPERFAMILY SSF48208 36 351 2.3E-51 T 15-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 NJ56_05090 716143c8a79ffa3a0b13f1afab6653f7 372 Pfam PF13556 PucR C-terminal helix-turn-helix domain 312 370 9.3E-21 T 15-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain NJ56_05090 716143c8a79ffa3a0b13f1afab6653f7 372 Pfam PF05651 Putative sugar diacid recognition 6 139 2.8E-52 T 15-10-2018 IPR008599 Putative sugar diacid recognition NJ56_05090 716143c8a79ffa3a0b13f1afab6653f7 372 Gene3D G3DSA:1.10.10.2840 245 372 1.3E-20 T 15-10-2018 NJ56_15005 92560f41b6d324c45925b7a004c33303 816 PIRSF PIRSF034586 456 816 3.0E-112 T 15-10-2018 IPR017030 Virulence effector, SrfC NJ56_15005 92560f41b6d324c45925b7a004c33303 816 PIRSF PIRSF034586 4 459 1.9E-167 T 15-10-2018 IPR017030 Virulence effector, SrfC NJ56_15005 92560f41b6d324c45925b7a004c33303 816 Pfam PF10139 Putative bacterial virulence factor 461 808 4.1E-61 T 15-10-2018 IPR017030 Virulence effector, SrfC NJ56_15005 92560f41b6d324c45925b7a004c33303 816 Pfam PF10139 Putative bacterial virulence factor 28 457 3.3E-135 T 15-10-2018 IPR017030 Virulence effector, SrfC NJ56_06035 45ab75d6471ec73786a453fab2154edc 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 5.3E-67 T 15-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 NJ56_06035 45ab75d6471ec73786a453fab2154edc 145 SUPERFAMILY SSF69500 1 144 1.83E-54 T 15-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily NJ56_06035 45ab75d6471ec73786a453fab2154edc 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 3.2E-51 T 15-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 NJ56_06035 45ab75d6471ec73786a453fab2154edc 145 Gene3D G3DSA:3.50.80.10 1 145 1.5E-54 T 15-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily NJ56_06035 45ab75d6471ec73786a453fab2154edc 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.255 T 15-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 NJ56_14545 499233a9aeeeed1f0f70eaa80ae14002 293 SUPERFAMILY SSF54001 156 287 3.87E-40 T 15-10-2018 IPR038765 Papain-like cysteine peptidase superfamily NJ56_14545 499233a9aeeeed1f0f70eaa80ae14002 293 Pfam PF00877 NlpC/P60 family 175 285 4.0E-31 T 15-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain NJ56_14545 499233a9aeeeed1f0f70eaa80ae14002 293 Gene3D G3DSA:3.90.1720.10 86 285 4.1E-42 T 15-10-2018 NJ56_12375 bc26b7583a98880ffa83407717eeb7e8 360 SUPERFAMILY SSF81345 24 355 4.32E-79 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_12375 bc26b7583a98880ffa83407717eeb7e8 360 Pfam PF01032 FecCD transport family 42 355 2.3E-84 T 15-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 NJ56_12375 bc26b7583a98880ffa83407717eeb7e8 360 Gene3D G3DSA:1.10.3470.10 27 359 1.7E-97 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_17415 6991569f9e00cbabbc1cf26af85ee515 75 SUPERFAMILY SSF48452 2 48 4.55E-10 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_17415 6991569f9e00cbabbc1cf26af85ee515 75 Gene3D G3DSA:1.20.58.320 1 55 2.6E-10 T 15-10-2018 NJ56_17415 6991569f9e00cbabbc1cf26af85ee515 75 Pfam PF06041 Bacterial protein of unknown function (DUF924) 6 48 1.0E-6 T 15-10-2018 IPR010323 Protein of unknown function DUF924 NJ56_16595 067e02e64edae23e2fb659744ff05014 79 Gene3D G3DSA:3.30.910.10 1 79 1.4E-33 T 15-10-2018 IPR036687 DinI-like superfamily NJ56_16595 067e02e64edae23e2fb659744ff05014 79 SUPERFAMILY SSF54857 1 78 2.88E-27 T 15-10-2018 IPR036687 DinI-like superfamily NJ56_16595 067e02e64edae23e2fb659744ff05014 79 Pfam PF06183 DinI-like family 14 76 1.5E-28 T 15-10-2018 IPR010391 DNA damage-inducible protein DinI-like NJ56_08430 9b272df5af215a799cf111a8373205ed 328 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 8 313 7.8E-121 T 15-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 NJ56_08430 9b272df5af215a799cf111a8373205ed 328 Pfam PF03741 Integral membrane protein TerC family 81 283 1.5E-55 T 15-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 NJ56_05965 6e4119ac66d2f5ab2d39e2dc06e0782e 394 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 393 1.4E-57 T 15-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 NJ56_05965 6e4119ac66d2f5ab2d39e2dc06e0782e 394 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 82 1.5E-18 T 15-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 NJ56_13100 c91f1070ecb3dd3e812d57482cadbb9b 469 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 106 1.0E-19 T 15-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 NJ56_13100 c91f1070ecb3dd3e812d57482cadbb9b 469 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 229 458 9.9E-64 T 15-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 NJ56_13100 c91f1070ecb3dd3e812d57482cadbb9b 469 Pfam PF07196 Flagellin hook IN motif 128 185 2.3E-12 T 15-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 NJ56_04205 e77bdc39eed4ee5298ad0dda666814a4 174 Gene3D G3DSA:2.60.40.1090 28 173 7.1E-38 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_04205 e77bdc39eed4ee5298ad0dda666814a4 174 SUPERFAMILY SSF49401 30 173 2.14E-38 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_04205 e77bdc39eed4ee5298ad0dda666814a4 174 Pfam PF00419 Fimbrial protein 32 173 1.9E-19 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_03390 75b76b32b78a82de290432d8199f9c44 70 Gene3D G3DSA:3.30.450.20 1 59 2.6E-20 T 15-10-2018 NJ56_03390 75b76b32b78a82de290432d8199f9c44 70 Pfam PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A 1 41 1.2E-17 T 15-10-2018 IPR009320 Antitoxin CbeA GO:0051495 NJ56_03390 75b76b32b78a82de290432d8199f9c44 70 SUPERFAMILY SSF143737 1 42 2.09E-17 T 15-10-2018 IPR038025 Antitoxin CbeA superfamily NJ56_10915 1331252958531283ec3a89ec04027afe 229 Pfam PF02230 Phospholipase/Carboxylesterase 4 206 8.7E-40 T 15-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 NJ56_10915 1331252958531283ec3a89ec04027afe 229 SUPERFAMILY SSF53474 6 206 1.87E-33 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_10915 1331252958531283ec3a89ec04027afe 229 Gene3D G3DSA:3.40.50.1820 1 207 1.3E-37 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_14915 bc5d4977cfa84f0e129a2b6f6751cec8 462 PIRSF PIRSF000204 1 462 6.5E-234 T 15-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 NJ56_14915 bc5d4977cfa84f0e129a2b6f6751cec8 462 SUPERFAMILY SSF52467 289 462 6.54E-75 T 15-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily NJ56_14915 bc5d4977cfa84f0e129a2b6f6751cec8 462 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 460 6.8E-201 T 15-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 NJ56_14915 bc5d4977cfa84f0e129a2b6f6751cec8 462 Gene3D G3DSA:3.40.50.1220 286 462 7.2E-85 T 15-10-2018 NJ56_10875 bb3f8a918608bfe24a57caed87a39de8 354 Pfam PF01594 AI-2E family transporter 19 345 6.0E-80 T 15-10-2018 IPR002549 Transmembrane protein TqsA-like NJ56_14625 6075969cacf29983833242fa6f3f9292 201 SUPERFAMILY SSF47616 84 195 1.95E-27 T 15-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NJ56_14625 6075969cacf29983833242fa6f3f9292 201 SUPERFAMILY SSF52833 1 78 2.15E-20 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_14625 6075969cacf29983833242fa6f3f9292 201 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 6.4E-13 T 15-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 NJ56_14625 6075969cacf29983833242fa6f3f9292 201 Gene3D G3DSA:3.40.30.10 3 191 1.7E-76 T 15-10-2018 NJ56_14625 6075969cacf29983833242fa6f3f9292 201 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 189 1.1E-16 T 15-10-2018 IPR004046 Glutathione S-transferase, C-terminal NJ56_14625 6075969cacf29983833242fa6f3f9292 201 Gene3D G3DSA:1.20.1050.10 82 188 1.7E-76 T 15-10-2018 NJ56_14445 f29d6130a18072434294cb0ce6c65dfe 123 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 104 121 - T 15-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 NJ56_14445 f29d6130a18072434294cb0ce6c65dfe 123 SUPERFAMILY SSF89360 19 112 4.51E-26 T 15-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 NJ56_14445 f29d6130a18072434294cb0ce6c65dfe 123 Gene3D G3DSA:2.60.300.12 18 123 2.5E-33 T 15-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 NJ56_14445 f29d6130a18072434294cb0ce6c65dfe 123 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 19 122 2.2E-32 T 15-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 NJ56_14445 f29d6130a18072434294cb0ce6c65dfe 123 Pfam PF01521 Iron-sulphur cluster biosynthesis 19 119 1.6E-17 T 15-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 NJ56_11310 42cedc8fbb5a23b55d2f59b7daf09f10 354 SUPERFAMILY SSF53955 43 346 2.67E-94 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_11310 42cedc8fbb5a23b55d2f59b7daf09f10 354 Gene3D G3DSA:1.10.530.10 92 347 1.6E-119 T 15-10-2018 NJ56_11310 42cedc8fbb5a23b55d2f59b7daf09f10 354 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 56 347 1.7E-122 T 15-10-2018 IPR011757 Lytic transglycosylase MltB NJ56_11310 42cedc8fbb5a23b55d2f59b7daf09f10 354 Gene3D G3DSA:1.10.8.350 54 227 1.6E-119 T 15-10-2018 NJ56_11310 42cedc8fbb5a23b55d2f59b7daf09f10 354 Pfam PF13406 Transglycosylase SLT domain 52 344 3.3E-93 T 15-10-2018 IPR031304 Transglycosylase SLT domain 2 NJ56_04930 68b9027ddefe1ff2a5c7870801180b81 544 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 445 6.6E-178 T 15-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 NJ56_04930 68b9027ddefe1ff2a5c7870801180b81 544 Pfam PF03109 ABC1 family 113 230 4.3E-35 T 15-10-2018 IPR004147 UbiB domain NJ56_04930 68b9027ddefe1ff2a5c7870801180b81 544 SUPERFAMILY SSF56112 94 435 1.16E-46 T 15-10-2018 IPR011009 Protein kinase-like domain superfamily NJ56_04930 68b9027ddefe1ff2a5c7870801180b81 544 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 539 57.371 T 15-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 NJ56_15185 34328c163cbf22f751dffc8ff95e4050 221 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 15-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 NJ56_15185 34328c163cbf22f751dffc8ff95e4050 221 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 213 1.5E-80 T 15-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 NJ56_15185 34328c163cbf22f751dffc8ff95e4050 221 Gene3D G3DSA:3.20.20.70 1 220 5.2E-75 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_15185 34328c163cbf22f751dffc8ff95e4050 221 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 201 3.7E-42 T 15-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 NJ56_15185 34328c163cbf22f751dffc8ff95e4050 221 SUPERFAMILY SSF51569 1 216 3.35E-62 T 15-10-2018 NJ56_15185 34328c163cbf22f751dffc8ff95e4050 221 ProSitePatterns PS00958 Transaldolase active site. 82 99 - T 15-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 NJ56_03895 e06c920762c39c3476a01016d4214075 92 SUPERFAMILY SSF47413 4 71 3.66E-30 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_03895 e06c920762c39c3476a01016d4214075 92 Pfam PF13693 Winged helix-turn-helix DNA-binding 7 81 4.9E-37 T 15-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain NJ56_03895 e06c920762c39c3476a01016d4214075 92 Gene3D G3DSA:1.10.260.40 3 71 2.0E-33 T 15-10-2018 NJ56_10205 94c1ca160e09605617435b68567de550 113 Pfam PF17345 Family of unknown function (DUF5375) 7 105 7.5E-25 T 15-10-2018 IPR035317 Protein of unknown function DUF5375 NJ56_10205 94c1ca160e09605617435b68567de550 113 ProDom PD070475 P4 PHAGE PROPHAGE-DERIVED CNR-LIKE ORF106 T2655 9 106 4.0E-18 T 15-10-2018 IPR035317 Protein of unknown function DUF5375 NJ56_01435 a4d64f76e0b86a32b8dbde5d2f960838 296 Gene3D G3DSA:1.10.357.140 14 181 2.1E-17 T 15-10-2018 NJ56_01435 a4d64f76e0b86a32b8dbde5d2f960838 296 Pfam PF01040 UbiA prenyltransferase family 19 268 1.2E-58 T 15-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 NJ56_01435 a4d64f76e0b86a32b8dbde5d2f960838 296 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 4 282 1.3E-90 T 15-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 NJ56_01435 a4d64f76e0b86a32b8dbde5d2f960838 296 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 2 284 18.25 T 15-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 NJ56_01435 a4d64f76e0b86a32b8dbde5d2f960838 296 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 57 79 - T 15-10-2018 IPR030470 UbiA prenyltransferase conserved site NJ56_17695 4518431b53fbd0ff486ce3fd72741a7b 154 Pfam PF10502 Signal peptidase, peptidase S26 55 145 1.9E-17 T 15-10-2018 IPR019533 Peptidase S26 NJ56_17695 4518431b53fbd0ff486ce3fd72741a7b 154 SUPERFAMILY SSF51306 42 144 1.83E-15 T 15-10-2018 IPR036286 LexA/Signal peptidase-like superfamily NJ56_17695 4518431b53fbd0ff486ce3fd72741a7b 154 Gene3D G3DSA:2.10.109.10 38 152 5.0E-8 T 15-10-2018 NJ56_03335 6dbe2beb307e3dc5981c19b21fbc3b5a 165 Pfam PF03830 PTS system sorbose subfamily IIB component 6 154 1.5E-46 T 15-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 NJ56_03335 6dbe2beb307e3dc5981c19b21fbc3b5a 165 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 5 154 4.1E-51 T 15-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 NJ56_03335 6dbe2beb307e3dc5981c19b21fbc3b5a 165 Gene3D G3DSA:3.40.35.10 1 164 5.6E-48 T 15-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 NJ56_03335 6dbe2beb307e3dc5981c19b21fbc3b5a 165 SUPERFAMILY SSF52728 5 161 1.05E-46 T 15-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 NJ56_15125 fd54877f47cce1da3b2918459c255230 581 SUPERFAMILY SSF52540 19 579 1.31E-208 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15125 fd54877f47cce1da3b2918459c255230 581 Gene3D G3DSA:3.10.410.10 469 557 6.0E-27 T 15-10-2018 NJ56_15125 fd54877f47cce1da3b2918459c255230 581 Pfam PF01268 Formate--tetrahydrofolate ligase 19 580 2.4E-229 T 15-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 NJ56_15125 fd54877f47cce1da3b2918459c255230 581 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 345 356 - T 15-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 NJ56_15125 fd54877f47cce1da3b2918459c255230 581 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 1 581 40.594 T 15-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 NJ56_15125 fd54877f47cce1da3b2918459c255230 581 Gene3D G3DSA:3.30.1510.10 133 264 1.2E-182 T 15-10-2018 NJ56_15125 fd54877f47cce1da3b2918459c255230 581 Gene3D G3DSA:3.40.50.300 19 459 1.2E-182 T 15-10-2018 NJ56_04935 42f9f1d39eb7b30b8cb723994bf29e0e 211 Pfam PF02036 SCP-2 sterol transfer family 24 122 5.4E-21 T 15-10-2018 IPR003033 SCP2 sterol-binding domain NJ56_04935 42f9f1d39eb7b30b8cb723994bf29e0e 211 SUPERFAMILY SSF55718 19 122 1.8E-7 T 15-10-2018 IPR036527 SCP2 sterol-binding domain superfamily NJ56_16215 67d43d2630bad54e66f4af23c0fc1f33 447 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 445 7.7E-239 T 15-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 NJ56_16215 67d43d2630bad54e66f4af23c0fc1f33 447 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 446 58.106 T 15-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 NJ56_16215 67d43d2630bad54e66f4af23c0fc1f33 447 SUPERFAMILY SSF55909 4 446 4.32E-198 T 15-10-2018 NJ56_16215 67d43d2630bad54e66f4af23c0fc1f33 447 Gene3D G3DSA:3.75.10.20 1 447 1.1E-203 T 15-10-2018 IPR037031 Succinylarginine dihydrolase superfamily GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 NJ56_16215 67d43d2630bad54e66f4af23c0fc1f33 447 Pfam PF04996 Succinylarginine dihydrolase 4 445 1.7E-212 T 15-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 NJ56_05235 8446de5d5ef5a0b26dfd00d5d40d8108 276 Gene3D G3DSA:3.20.20.70 1 252 6.5E-121 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_05235 8446de5d5ef5a0b26dfd00d5d40d8108 276 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 8 274 1.5E-133 T 15-10-2018 IPR009215 TIM-barrel domain, IGPS-like NJ56_05235 8446de5d5ef5a0b26dfd00d5d40d8108 276 SUPERFAMILY SSF51621 4 197 1.0E-84 T 15-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 NJ56_05235 8446de5d5ef5a0b26dfd00d5d40d8108 276 PIRSF PIRSF034452 1 276 2.4E-162 T 15-10-2018 IPR009215 TIM-barrel domain, IGPS-like NJ56_01605 93cc827838bcdbf94532b35a31016a3e 1227 Gene3D G3DSA:3.40.50.300 956 1221 2.1E-24 T 15-10-2018 NJ56_01605 93cc827838bcdbf94532b35a31016a3e 1227 SUPERFAMILY SSF52540 26 1199 1.56E-25 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01605 93cc827838bcdbf94532b35a31016a3e 1227 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1111 1181 1.8E-14 T 15-10-2018 NJ56_01605 93cc827838bcdbf94532b35a31016a3e 1227 SUPERFAMILY SSF52540 679 1214 1.18E-7 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01605 93cc827838bcdbf94532b35a31016a3e 1227 Gene3D G3DSA:3.40.50.300 1 288 2.3E-45 T 15-10-2018 NJ56_05075 be9ecaf178b8ae8a2bdf5d3709ce4d96 130 Pfam PF12568 Acetyltransferase (GNAT) domain 2 129 9.8E-51 T 15-10-2018 IPR000182 GNAT domain NJ56_05075 be9ecaf178b8ae8a2bdf5d3709ce4d96 130 Hamap MF_02018 PanD regulatory factor [panZ]. 1 130 33.202 T 15-10-2018 IPR032900 PanD regulatory factor PanZ GO:0015940|GO:0031638 NJ56_05075 be9ecaf178b8ae8a2bdf5d3709ce4d96 130 SUPERFAMILY SSF55729 17 121 4.22E-9 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_05075 be9ecaf178b8ae8a2bdf5d3709ce4d96 130 Gene3D G3DSA:3.40.630.30 1 130 4.0E-37 T 15-10-2018 NJ56_15420 86aeb6f85ffc0cd6e9226b2b6eb5c5a5 89 Pfam PF13453 Transcription factor zinc-finger 2 42 1.2E-20 T 15-10-2018 IPR027392 Transcription factor zinc-finger NJ56_08330 e241d49cd5ede7ef818d0006a3c0ddd5 656 Gene3D G3DSA:3.40.50.2300 453 643 2.5E-25 T 15-10-2018 NJ56_08330 e241d49cd5ede7ef818d0006a3c0ddd5 656 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 1 650 37.148 T 15-10-2018 IPR007443 Penicillin-binding protein activator LpoA NJ56_08330 e241d49cd5ede7ef818d0006a3c0ddd5 656 Gene3D G3DSA:1.25.40.650 149 256 4.2E-43 T 15-10-2018 NJ56_08330 e241d49cd5ede7ef818d0006a3c0ddd5 656 Gene3D G3DSA:1.25.40.10 25 148 8.9E-44 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_08330 e241d49cd5ede7ef818d0006a3c0ddd5 656 Pfam PF04348 LppC putative lipoprotein 41 285 8.3E-52 T 15-10-2018 IPR007443 Penicillin-binding protein activator LpoA NJ56_08330 e241d49cd5ede7ef818d0006a3c0ddd5 656 Pfam PF04348 LppC putative lipoprotein 327 650 9.4E-91 T 15-10-2018 IPR007443 Penicillin-binding protein activator LpoA NJ56_08330 e241d49cd5ede7ef818d0006a3c0ddd5 656 SUPERFAMILY SSF53822 259 653 4.71E-80 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_02700 a74f524a5a09697bae8954e44b63f863 282 Pfam PF03799 Cell division protein FtsQ 132 246 1.7E-25 T 15-10-2018 IPR005548 Cell division protein FtsQ/DivIB NJ56_02700 a74f524a5a09697bae8954e44b63f863 282 Gene3D G3DSA:3.10.20.310 60 128 2.5E-33 T 15-10-2018 NJ56_02700 a74f524a5a09697bae8954e44b63f863 282 Gene3D G3DSA:3.40.50.11690 129 261 2.3E-48 T 15-10-2018 NJ56_02700 a74f524a5a09697bae8954e44b63f863 282 Pfam PF08478 POTRA domain, FtsQ-type 59 128 2.8E-22 T 15-10-2018 IPR013685 POTRA domain, FtsQ-type NJ56_02700 a74f524a5a09697bae8954e44b63f863 282 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 28 254 25.034 T 15-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.2E-6 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.2E-6 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 Gene3D G3DSA:3.40.50.2300 69 323 2.8E-100 T 15-10-2018 NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 Gene3D G3DSA:3.40.50.2300 162 324 2.8E-100 T 15-10-2018 NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 15-10-2018 NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 Pfam PF13377 Periplasmic binding protein-like domain 171 331 2.8E-40 T 15-10-2018 NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 SUPERFAMILY SSF47413 1 59 3.16E-16 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 SUPERFAMILY SSF53822 60 340 1.85E-94 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 SMART SM00354 1 71 3.9E-36 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 335 63.033 T 15-10-2018 IPR023588 Transcription regulator HTH, PurR GO:0006355 NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 Gene3D G3DSA:1.10.260.40 3 59 5.8E-25 T 15-10-2018 NJ56_14530 ec55c50033ba48bf77b27c8b1c87bbf1 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 7.4E-18 T 15-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 NJ56_16475 bc75761744b20ed6162fa5a996f27b1a 195 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 2 194 7.9E-52 T 15-10-2018 IPR014094 Penicillin-binding protein activator LpoB NJ56_16475 bc75761744b20ed6162fa5a996f27b1a 195 Pfam PF13036 Peptidoglycan-synthase activator LpoB 56 192 9.6E-33 T 15-10-2018 IPR014094 Penicillin-binding protein activator LpoB NJ56_16475 bc75761744b20ed6162fa5a996f27b1a 195 Hamap MF_01889 Penicillin-binding protein activator LpoB [lpoB]. 1 194 36.172 T 15-10-2018 IPR014094 Penicillin-binding protein activator LpoB NJ56_16475 bc75761744b20ed6162fa5a996f27b1a 195 Gene3D G3DSA:3.40.50.10610 59 195 6.3E-52 T 15-10-2018 NJ56_00515 2df7b46e7b39d8504a7d5874a7618291 464 Pfam PF03573 outer membrane porin, OprD family 33 433 2.5E-22 T 15-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 NJ56_00515 2df7b46e7b39d8504a7d5874a7618291 464 Gene3D G3DSA:2.40.160.10 24 443 3.6E-32 T 15-10-2018 IPR023614 Porin domain superfamily NJ56_06990 88118f0abf35e04674375d2b58016d84 770 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 688 2.3E-225 T 15-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 NJ56_06990 88118f0abf35e04674375d2b58016d84 770 Pfam PF07664 Ferrous iron transport protein B C terminus 456 508 4.7E-22 T 15-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 NJ56_06990 88118f0abf35e04674375d2b58016d84 770 Pfam PF02421 Ferrous iron transport protein B 5 163 2.7E-64 T 15-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 NJ56_06990 88118f0abf35e04674375d2b58016d84 770 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 159 1.2E-11 T 15-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 NJ56_06990 88118f0abf35e04674375d2b58016d84 770 Gene3D G3DSA:3.40.50.300 1 173 8.8E-48 T 15-10-2018 NJ56_06990 88118f0abf35e04674375d2b58016d84 770 SUPERFAMILY SSF52540 4 171 2.41E-40 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06990 88118f0abf35e04674375d2b58016d84 770 Pfam PF07670 Nucleoside recognition 354 444 1.1E-12 T 15-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 NJ56_06990 88118f0abf35e04674375d2b58016d84 770 Pfam PF07670 Nucleoside recognition 513 690 8.7E-36 T 15-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 NJ56_16245 06a380d2409147e93cdba591579539e9 335 PIRSF PIRSF000267 1 335 8.4E-89 T 15-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 NJ56_16245 06a380d2409147e93cdba591579539e9 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 324 8.0E-100 T 15-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 NJ56_16245 06a380d2409147e93cdba591579539e9 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 5 212 1.9E-43 T 15-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 NJ56_05085 63947f41eddb8a1e6c1c3d4b162ddb66 421 Pfam PF02447 GntP family permease 8 414 6.3E-26 T 15-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 NJ56_05285 a0e407e400d2c24b612b97e2b97b9685 850 Pfam PF01295 Adenylate cyclase, class-I 228 825 9.0E-263 T 15-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 NJ56_05285 a0e407e400d2c24b612b97e2b97b9685 850 Pfam PF12633 Adenylate cyclase NT domain 5 200 1.3E-80 T 15-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 NJ56_05285 a0e407e400d2c24b612b97e2b97b9685 850 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 242 253 - T 15-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 NJ56_05285 a0e407e400d2c24b612b97e2b97b9685 850 PIRSF PIRSF001444 1 850 0.0 T 15-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 NJ56_05285 a0e407e400d2c24b612b97e2b97b9685 850 ProSitePatterns PS01093 Adenylate cyclase class-I signature 2. 598 612 - T 15-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 NJ56_13580 a9ec9d82920c685b8a7d0caedbc02340 636 SUPERFAMILY SSF51905 78 630 1.59E-14 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_13580 a9ec9d82920c685b8a7d0caedbc02340 636 Pfam PF13450 NAD(P)-binding Rossmann-like domain 82 142 1.7E-12 T 15-10-2018 NJ56_13580 a9ec9d82920c685b8a7d0caedbc02340 636 Gene3D G3DSA:3.50.50.60 74 157 3.5E-8 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_14480 0869f91afc82594772feab3d7d775fba 78 PIRSF PIRSF002855 1 78 9.0E-29 T 15-10-2018 IPR016367 Murein-lipoprotein NJ56_14480 0869f91afc82594772feab3d7d775fba 78 SUPERFAMILY SSF58042 24 73 7.72E-23 T 15-10-2018 NJ56_14480 0869f91afc82594772feab3d7d775fba 78 Gene3D G3DSA:1.20.5.190 22 77 2.9E-32 T 15-10-2018 NJ56_14480 0869f91afc82594772feab3d7d775fba 78 Pfam PF04728 Lipoprotein leucine-zipper 26 78 5.4E-25 T 15-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 NJ56_01320 81a75dcff815c525d5d35e89e639a13c 589 Gene3D G3DSA:3.40.50.300 327 586 4.0E-78 T 15-10-2018 NJ56_01320 81a75dcff815c525d5d35e89e639a13c 589 SUPERFAMILY SSF90123 7 320 6.8E-72 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_01320 81a75dcff815c525d5d35e89e639a13c 589 Pfam PF00664 ABC transporter transmembrane region 21 291 1.2E-38 T 15-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 NJ56_01320 81a75dcff815c525d5d35e89e639a13c 589 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_01320 81a75dcff815c525d5d35e89e639a13c 589 Gene3D G3DSA:1.20.1560.10 2 319 9.2E-75 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_01320 81a75dcff815c525d5d35e89e639a13c 589 Pfam PF00005 ABC transporter 352 500 9.4E-30 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_01320 81a75dcff815c525d5d35e89e639a13c 589 SUPERFAMILY SSF52540 334 572 1.08E-78 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01320 81a75dcff815c525d5d35e89e639a13c 589 SMART SM00382 361 547 2.8E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_07100 0412869cd871f65f727aa512fb180c5f 173 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 15-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 NJ56_07100 0412869cd871f65f727aa512fb180c5f 173 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 29.47 T 15-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 NJ56_07100 0412869cd871f65f727aa512fb180c5f 173 SUPERFAMILY SSF52540 4 170 1.05E-34 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_07100 0412869cd871f65f727aa512fb180c5f 173 PRINTS PR01100 Shikimate kinase family signature 59 67 4.3E-29 T 15-10-2018 NJ56_07100 0412869cd871f65f727aa512fb180c5f 173 PRINTS PR01100 Shikimate kinase family signature 31 44 4.3E-29 T 15-10-2018 NJ56_07100 0412869cd871f65f727aa512fb180c5f 173 PRINTS PR01100 Shikimate kinase family signature 98 115 4.3E-29 T 15-10-2018 NJ56_07100 0412869cd871f65f727aa512fb180c5f 173 PRINTS PR01100 Shikimate kinase family signature 7 22 4.3E-29 T 15-10-2018 NJ56_07100 0412869cd871f65f727aa512fb180c5f 173 PRINTS PR01100 Shikimate kinase family signature 77 86 4.3E-29 T 15-10-2018 NJ56_07100 0412869cd871f65f727aa512fb180c5f 173 Pfam PF01202 Shikimate kinase 13 170 1.9E-56 T 15-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 NJ56_07100 0412869cd871f65f727aa512fb180c5f 173 Gene3D G3DSA:3.40.50.300 1 173 2.2E-58 T 15-10-2018 NJ56_17360 3f3861df033301c60b22ba88852a1aa7 244 Pfam PF02698 DUF218 domain 48 171 4.8E-17 T 15-10-2018 IPR003848 Domain of unknown function DUF218 NJ56_17360 3f3861df033301c60b22ba88852a1aa7 244 PIRSF PIRSF005011 1 244 1.9E-152 T 15-10-2018 IPR023604 Uncharacterised protein family SanA NJ56_16485 2b57c55e3642c5af06a277b04f6ba0a7 117 SUPERFAMILY SSF54197 2 112 1.13E-35 T 15-10-2018 IPR036265 HIT-like superfamily NJ56_16485 2b57c55e3642c5af06a277b04f6ba0a7 117 Gene3D G3DSA:3.30.428.10 1 111 2.1E-35 T 15-10-2018 IPR036265 HIT-like superfamily NJ56_16485 2b57c55e3642c5af06a277b04f6ba0a7 117 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 15-10-2018 IPR019808 Histidine triad, conserved site NJ56_16485 2b57c55e3642c5af06a277b04f6ba0a7 117 Pfam PF01230 HIT domain 12 108 6.3E-29 T 15-10-2018 IPR001310 Histidine triad (HIT) protein NJ56_16485 2b57c55e3642c5af06a277b04f6ba0a7 117 PRINTS PR00332 Histidine triad family signature 6 22 1.3E-19 T 15-10-2018 IPR001310 Histidine triad (HIT) protein NJ56_16485 2b57c55e3642c5af06a277b04f6ba0a7 117 PRINTS PR00332 Histidine triad family signature 95 105 1.3E-19 T 15-10-2018 IPR001310 Histidine triad (HIT) protein NJ56_16485 2b57c55e3642c5af06a277b04f6ba0a7 117 PRINTS PR00332 Histidine triad family signature 27 45 1.3E-19 T 15-10-2018 IPR001310 Histidine triad (HIT) protein NJ56_07200 d06794e516103151d9232221d9a55684 691 Pfam PF12805 FUSC-like inner membrane protein yccS 65 331 2.8E-69 T 15-10-2018 IPR032692 Integral membrane protein YccS, N-terminal NJ56_07200 d06794e516103151d9232221d9a55684 691 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 671 8.4E-189 T 15-10-2018 IPR010020 Integral membrane protein, YccS/YhfK NJ56_07200 d06794e516103151d9232221d9a55684 691 Pfam PF13515 Fusaric acid resistance protein-like 379 498 1.5E-19 T 15-10-2018 NJ56_06500 caeb1d2c759b4ed6d238c8076428d3e6 254 SUPERFAMILY SSF49354 28 158 6.02E-24 T 15-10-2018 IPR008962 PapD-like superfamily NJ56_06500 caeb1d2c759b4ed6d238c8076428d3e6 254 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 41 158 4.3E-18 T 15-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 NJ56_06500 caeb1d2c759b4ed6d238c8076428d3e6 254 Gene3D G3DSA:2.60.40.10 40 158 4.6E-11 T 15-10-2018 IPR013783 Immunoglobulin-like fold NJ56_17730 0ab1abffa5c42bcf4e99b52668a4325b 168 Pfam PF09676 Type IV conjugative transfer system lipoprotein (TraV) 26 144 5.0E-16 T 15-10-2018 IPR014118 Type IV conjugative transfer system protein TraV NJ56_01120 2e018f3394822226db794967e029b52c 370 Pfam PF00534 Glycosyl transferases group 1 192 338 3.1E-23 T 15-10-2018 IPR001296 Glycosyl transferase, family 1 NJ56_01120 2e018f3394822226db794967e029b52c 370 SUPERFAMILY SSF53756 7 338 4.49E-36 T 15-10-2018 NJ56_01120 2e018f3394822226db794967e029b52c 370 Gene3D G3DSA:3.40.50.2000 169 340 3.7E-27 T 15-10-2018 NJ56_02530 228b335c5ad6cc9179984c9e8806fc7a 308 Gene3D G3DSA:3.40.50.300 1 235 1.7E-65 T 15-10-2018 NJ56_02530 228b335c5ad6cc9179984c9e8806fc7a 308 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_02530 228b335c5ad6cc9179984c9e8806fc7a 308 Pfam PF00005 ABC transporter 21 165 4.1E-32 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_02530 228b335c5ad6cc9179984c9e8806fc7a 308 SUPERFAMILY SSF52540 3 234 3.7E-63 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02530 228b335c5ad6cc9179984c9e8806fc7a 308 SMART SM00382 30 213 1.4E-12 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_06650 ba2fb6ffc8612971a2f4653d99e2dc56 563 Pfam PF00884 Sulfatase 250 537 1.6E-42 T 15-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 NJ56_06650 ba2fb6ffc8612971a2f4653d99e2dc56 563 SUPERFAMILY SSF53649 250 500 6.54E-17 T 15-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 NJ56_06650 ba2fb6ffc8612971a2f4653d99e2dc56 563 Gene3D G3DSA:3.40.720.10 240 553 2.0E-57 T 15-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 NJ56_06650 ba2fb6ffc8612971a2f4653d99e2dc56 563 Pfam PF08019 Domain of unknown function (DUF1705) 57 184 3.3E-18 T 15-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 NJ56_03710 cf7fa3ab10cf9916350ac6e2fb6e2600 103 Gene3D G3DSA:3.40.1440.10 2 100 1.5E-26 T 15-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 NJ56_03710 cf7fa3ab10cf9916350ac6e2fb6e2600 103 SUPERFAMILY SSF82771 6 74 9.42E-12 T 15-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 NJ56_03710 cf7fa3ab10cf9916350ac6e2fb6e2600 103 Hamap MF_01029 UPF0213 protein YhbQ [yhbQ]. 3 95 31.026 T 15-10-2018 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease NJ56_03710 cf7fa3ab10cf9916350ac6e2fb6e2600 103 Pfam PF01541 GIY-YIG catalytic domain 6 75 1.1E-12 T 15-10-2018 IPR000305 GIY-YIG endonuclease NJ56_10855 2b79f4281f4c63c0fcbb0c37832b03a4 428 Pfam PF00860 Permease family 16 383 1.8E-103 T 15-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 NJ56_10855 2b79f4281f4c63c0fcbb0c37832b03a4 428 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 11 404 2.7E-127 T 15-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 NJ56_10855 2b79f4281f4c63c0fcbb0c37832b03a4 428 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 329 349 - T 15-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 NJ56_08020 50d1e701a347a8a73eabadff19511968 489 SMART SM00316 37 122 2.1E-9 T 15-10-2018 IPR022967 RNA-binding domain, S1 NJ56_08020 50d1e701a347a8a73eabadff19511968 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 1.2E-174 T 15-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 NJ56_08020 50d1e701a347a8a73eabadff19511968 489 Gene3D G3DSA:2.40.50.140 31 127 4.1E-31 T 15-10-2018 NJ56_08020 50d1e701a347a8a73eabadff19511968 489 Pfam PF00575 S1 RNA binding domain 38 109 3.2E-6 T 15-10-2018 IPR003029 S1 domain GO:0003676 NJ56_08020 50d1e701a347a8a73eabadff19511968 489 Pfam PF10150 Ribonuclease E/G family 124 393 9.8E-102 T 15-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 NJ56_08020 50d1e701a347a8a73eabadff19511968 489 SUPERFAMILY SSF50249 39 128 6.0E-19 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_08020 50d1e701a347a8a73eabadff19511968 489 Gene3D G3DSA:3.40.1260.20 402 488 3.9E-6 T 15-10-2018 NJ56_03095 d4e695991f7cd356a68e5ebdf0e0cf70 205 Pfam PF17152 Periplasmic sensor domain 14 113 5.4E-27 T 15-10-2018 IPR033417 Periplasmic sensor domain CHASE8 NJ56_14365 88e8d4825d836bcfc37eebee4eeb5019 154 Pfam PF00877 NlpC/P60 family 47 153 2.7E-29 T 15-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain NJ56_14365 88e8d4825d836bcfc37eebee4eeb5019 154 Gene3D G3DSA:3.90.1720.10 33 154 1.5E-39 T 15-10-2018 NJ56_14365 88e8d4825d836bcfc37eebee4eeb5019 154 SUPERFAMILY SSF54001 33 154 3.19E-39 T 15-10-2018 IPR038765 Papain-like cysteine peptidase superfamily NJ56_09485 358bebba4153c357465074fb6b090bc1 239 Pfam PF03741 Integral membrane protein TerC family 16 202 1.2E-53 T 15-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 NJ56_14345 9965cb62dfe13febacd3259401209c0d 300 Pfam PF01522 Polysaccharide deacetylase 15 160 2.3E-11 T 15-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 NJ56_14345 9965cb62dfe13febacd3259401209c0d 300 Hamap MF_01870 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. 1 296 64.102 T 15-10-2018 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable GO:0016811 NJ56_14345 9965cb62dfe13febacd3259401209c0d 300 SUPERFAMILY SSF88713 14 275 9.18E-25 T 15-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NJ56_09475 ba8f53152e8135e44c821859b5cee236 403 SUPERFAMILY SSF103473 18 400 1.1E-23 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_09475 ba8f53152e8135e44c821859b5cee236 403 Hamap MF_01585 Lysophospholipid transporter LplT [lplT]. 2 398 40.271 T 15-10-2018 IPR023727 Lysophospholipid transporter LplT GO:0005886|GO:0051977|GO:0051978 NJ56_09475 ba8f53152e8135e44c821859b5cee236 403 Pfam PF07690 Major Facilitator Superfamily 23 350 5.5E-14 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_09475 ba8f53152e8135e44c821859b5cee236 403 Gene3D G3DSA:1.20.1250.20 13 394 2.7E-21 T 15-10-2018 NJ56_17485 a3c579596922ee547d819904ebe6d377 320 Gene3D G3DSA:3.40.50.150 45 308 6.9E-79 T 15-10-2018 NJ56_17485 a3c579596922ee547d819904ebe6d377 320 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 11 310 54.604 T 15-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 NJ56_17485 a3c579596922ee547d819904ebe6d377 320 Pfam PF05971 Protein of unknown function (DUF890) 10 307 4.4E-123 T 15-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 NJ56_17485 a3c579596922ee547d819904ebe6d377 320 PIRSF PIRSF029038 1 320 2.9E-153 T 15-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 NJ56_17485 a3c579596922ee547d819904ebe6d377 320 SUPERFAMILY SSF53335 48 306 3.63E-30 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_02360 a7c691a301925ca495e87ac2c09cb4a1 135 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 3 129 3.5E-29 T 15-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system NJ56_02360 a7c691a301925ca495e87ac2c09cb4a1 135 Gene3D G3DSA:3.30.160.250 1 86 6.1E-21 T 15-10-2018 NJ56_02360 a7c691a301925ca495e87ac2c09cb4a1 135 SUPERFAMILY SSF143100 1 60 3.53E-15 T 15-10-2018 IPR035069 TTHA1013/TTHA0281-like NJ56_08645 7cb33c8ad233578d5527a45120064455 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 6.3E-53 T 15-10-2018 IPR017861 Kae1/TsaD family NJ56_08645 7cb33c8ad233578d5527a45120064455 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 6.3E-53 T 15-10-2018 IPR017861 Kae1/TsaD family NJ56_08645 7cb33c8ad233578d5527a45120064455 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 6.3E-53 T 15-10-2018 IPR017861 Kae1/TsaD family NJ56_08645 7cb33c8ad233578d5527a45120064455 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 6.3E-53 T 15-10-2018 IPR017861 Kae1/TsaD family NJ56_08645 7cb33c8ad233578d5527a45120064455 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 6.3E-53 T 15-10-2018 IPR017861 Kae1/TsaD family NJ56_08645 7cb33c8ad233578d5527a45120064455 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 6.3E-53 T 15-10-2018 IPR017861 Kae1/TsaD family NJ56_08645 7cb33c8ad233578d5527a45120064455 337 Pfam PF00814 Glycoprotease family 24 307 1.3E-104 T 15-10-2018 IPR000905 Gcp-like domain NJ56_08645 7cb33c8ad233578d5527a45120064455 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 64.491 T 15-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 NJ56_08645 7cb33c8ad233578d5527a45120064455 337 Gene3D G3DSA:3.30.420.40 129 293 2.9E-134 T 15-10-2018 NJ56_08645 7cb33c8ad233578d5527a45120064455 337 Gene3D G3DSA:3.30.420.40 3 315 2.9E-134 T 15-10-2018 NJ56_08645 7cb33c8ad233578d5527a45120064455 337 SUPERFAMILY SSF53067 3 123 1.55E-31 T 15-10-2018 NJ56_08645 7cb33c8ad233578d5527a45120064455 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 1.8E-137 T 15-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 NJ56_08645 7cb33c8ad233578d5527a45120064455 337 SUPERFAMILY SSF53067 101 309 1.44E-45 T 15-10-2018 NJ56_08645 7cb33c8ad233578d5527a45120064455 337 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 15-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 NJ56_08645 7cb33c8ad233578d5527a45120064455 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 1.3E-128 T 15-10-2018 IPR017861 Kae1/TsaD family NJ56_16630 3694fc89f49a848c614d5a4053fd3460 94 SUPERFAMILY SSF54909 1 82 3.49E-13 T 15-10-2018 IPR011008 Dimeric alpha-beta barrel NJ56_16630 3694fc89f49a848c614d5a4053fd3460 94 Pfam PF03795 YCII-related domain 1 79 1.9E-9 T 15-10-2018 IPR005545 YCII-related NJ56_04995 5d299f385c4d704bb138a33e72bf436d 249 Gene3D G3DSA:3.20.20.190 9 237 4.6E-78 T 15-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 NJ56_04995 5d299f385c4d704bb138a33e72bf436d 249 SUPERFAMILY SSF51695 6 241 4.19E-61 T 15-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 NJ56_04995 5d299f385c4d704bb138a33e72bf436d 249 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 13 240 1.3E-38 T 15-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 NJ56_02810 4474e0422210059f4e260432277f3211 363 SUPERFAMILY SSF53659 2 360 5.38E-120 T 15-10-2018 NJ56_02810 4474e0422210059f4e260432277f3211 363 SMART SM01329 6 355 3.7E-190 T 15-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 NJ56_02810 4474e0422210059f4e260432277f3211 363 Gene3D G3DSA:3.40.718.10 1 362 2.1E-151 T 15-10-2018 NJ56_02810 4474e0422210059f4e260432277f3211 363 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 354 1.2E-162 T 15-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 NJ56_02810 4474e0422210059f4e260432277f3211 363 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 5 359 50.666 T 15-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 NJ56_02810 4474e0422210059f4e260432277f3211 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 247 266 - T 15-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 NJ56_02810 4474e0422210059f4e260432277f3211 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 355 1.7E-130 T 15-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 NJ56_00220 3f45b4ababe8a646d5aa28b83e8b00ea 202 ProSitePatterns PS00622 LuxR-type HTH domain signature. 157 184 - T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_00220 3f45b4ababe8a646d5aa28b83e8b00ea 202 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 196 3.9E-18 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_00220 3f45b4ababe8a646d5aa28b83e8b00ea 202 SUPERFAMILY SSF46894 134 199 5.44E-18 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_00220 3f45b4ababe8a646d5aa28b83e8b00ea 202 SMART SM00421 140 197 1.7E-20 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_00220 3f45b4ababe8a646d5aa28b83e8b00ea 202 Gene3D G3DSA:3.40.50.12740 3 200 4.2E-48 T 15-10-2018 NJ56_00220 3f45b4ababe8a646d5aa28b83e8b00ea 202 SUPERFAMILY SSF52172 1 129 3.7E-28 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_00220 3f45b4ababe8a646d5aa28b83e8b00ea 202 Pfam PF00072 Response regulator receiver domain 5 115 2.2E-23 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00220 3f45b4ababe8a646d5aa28b83e8b00ea 202 SMART SM00448 2 115 7.9E-19 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_00220 3f45b4ababe8a646d5aa28b83e8b00ea 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 173 4.7E-12 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_00220 3f45b4ababe8a646d5aa28b83e8b00ea 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 157 4.7E-12 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_00220 3f45b4ababe8a646d5aa28b83e8b00ea 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 185 4.7E-12 T 15-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NJ56_00155 19be6c5be4508855f47c2fb3b4631e94 355 Pfam PF03459 TOBE domain 290 349 1.8E-17 T 15-10-2018 IPR005116 Transport-associated OB, type 1 NJ56_00155 19be6c5be4508855f47c2fb3b4631e94 355 Gene3D G3DSA:3.40.50.300 10 239 1.4E-55 T 15-10-2018 NJ56_00155 19be6c5be4508855f47c2fb3b4631e94 355 SUPERFAMILY SSF52540 8 222 1.43E-59 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00155 19be6c5be4508855f47c2fb3b4631e94 355 Pfam PF00005 ABC transporter 16 156 8.6E-29 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_00155 19be6c5be4508855f47c2fb3b4631e94 355 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 2 350 6.3E-151 T 15-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 NJ56_00155 19be6c5be4508855f47c2fb3b4631e94 355 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 290 349 3.9E-17 T 15-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 NJ56_00155 19be6c5be4508855f47c2fb3b4631e94 355 SUPERFAMILY SSF50331 234 350 3.19E-22 T 15-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal NJ56_00155 19be6c5be4508855f47c2fb3b4631e94 355 Gene3D G3DSA:2.40.50.100 289 350 3.4E-15 T 15-10-2018 NJ56_00155 19be6c5be4508855f47c2fb3b4631e94 355 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_00155 19be6c5be4508855f47c2fb3b4631e94 355 SMART SM00382 23 206 2.5E-10 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_03165 8a7ea35875a1f70dbf614d4381a95d44 53 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 2.9E-13 T 15-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 NJ56_03165 8a7ea35875a1f70dbf614d4381a95d44 53 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 53 18.876 T 15-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 NJ56_03165 8a7ea35875a1f70dbf614d4381a95d44 53 PIRSF PIRSF036466 1 53 1.8E-19 T 15-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 NJ56_02160 ded477de287028e7bd1b0a351ab12e12 87 PIRSF PIRSF004669 1 86 2.7E-22 T 15-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NJ56_02160 ded477de287028e7bd1b0a351ab12e12 87 Pfam PF01313 Bacterial export proteins, family 3 4 75 3.9E-22 T 15-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NJ56_02160 ded477de287028e7bd1b0a351ab12e12 87 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 4 80 7.6E-26 T 15-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 NJ56_02160 ded477de287028e7bd1b0a351ab12e12 87 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 52 74 2.1E-23 T 15-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NJ56_02160 ded477de287028e7bd1b0a351ab12e12 87 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 37 52 2.1E-23 T 15-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NJ56_02160 ded477de287028e7bd1b0a351ab12e12 87 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 16 37 2.1E-23 T 15-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NJ56_08675 117b3d7bcbfa9cd44c6bc44a7100cfb4 436 Gene3D G3DSA:2.40.320.10 1 200 6.7E-37 T 15-10-2018 NJ56_08675 117b3d7bcbfa9cd44c6bc44a7100cfb4 436 SMART SM01118 2 202 6.2E-38 T 15-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 NJ56_08675 117b3d7bcbfa9cd44c6bc44a7100cfb4 436 SUPERFAMILY SSF55154 1 219 1.96E-52 T 15-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 NJ56_08675 117b3d7bcbfa9cd44c6bc44a7100cfb4 436 Pfam PF01928 CYTH domain 4 196 1.1E-27 T 15-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 NJ56_08310 1583c92d4d9dfd2d4be77a9e0d8c7c75 240 SUPERFAMILY SSF53955 52 231 1.35E-61 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_08310 1583c92d4d9dfd2d4be77a9e0d8c7c75 240 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 14 232 39.19 T 15-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_08310 1583c92d4d9dfd2d4be77a9e0d8c7c75 240 Gene3D G3DSA:1.10.3810.10 53 239 1.8E-54 T 15-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_08310 1583c92d4d9dfd2d4be77a9e0d8c7c75 240 Pfam PF00912 Transglycosylase 58 226 1.9E-51 T 15-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_08310 1583c92d4d9dfd2d4be77a9e0d8c7c75 240 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 14 230 9.1E-84 T 15-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_12000 e1dc8fa2cab0d877a6f38c6daf49398e 273 SMART SM01252 8 110 6.3E-33 T 15-10-2018 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding NJ56_12000 e1dc8fa2cab0d877a6f38c6daf49398e 273 Pfam PF04383 KilA-N domain 9 109 5.8E-21 T 15-10-2018 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 8.6E-59 T 15-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 8.6E-59 T 15-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 8.6E-59 T 15-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 8.6E-59 T 15-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 8.6E-59 T 15-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 8.6E-59 T 15-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 Gene3D G3DSA:3.30.540.10 1 140 1.6E-51 T 15-10-2018 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 Pfam PF00459 Inositol monophosphatase family 2 255 1.4E-70 T 15-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 9.8E-38 T 15-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 9.8E-38 T 15-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 9.8E-38 T 15-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 9.8E-38 T 15-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 Gene3D G3DSA:3.40.190.80 142 267 1.6E-41 T 15-10-2018 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 15-10-2018 IPR020583 Inositol monophosphatase, metal-binding site NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 SUPERFAMILY SSF56655 1 259 7.98E-85 T 15-10-2018 NJ56_10520 9c080aa5c37687afc079c3225310a4af 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 15-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 NJ56_10255 3d929a700058b41cfa44a140a5323d32 160 Pfam PF01668 SmpB protein 14 157 3.3E-58 T 15-10-2018 IPR000037 SsrA-binding protein GO:0003723 NJ56_10255 3d929a700058b41cfa44a140a5323d32 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 132 2.0E-61 T 15-10-2018 IPR000037 SsrA-binding protein GO:0003723 NJ56_10255 3d929a700058b41cfa44a140a5323d32 160 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 15-10-2018 IPR020081 SsrA-binding protein, conserved site NJ56_10255 3d929a700058b41cfa44a140a5323d32 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 160 73.98 T 15-10-2018 IPR000037 SsrA-binding protein GO:0003723 NJ56_10255 3d929a700058b41cfa44a140a5323d32 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 1.7E-54 T 15-10-2018 IPR000037 SsrA-binding protein GO:0003723 NJ56_10255 3d929a700058b41cfa44a140a5323d32 160 Gene3D G3DSA:2.40.280.10 7 134 5.0E-47 T 15-10-2018 IPR023620 Small protein B NJ56_10255 3d929a700058b41cfa44a140a5323d32 160 SUPERFAMILY SSF74982 8 138 8.5E-51 T 15-10-2018 IPR023620 Small protein B NJ56_10865 f7c177ecbcf64c74ab7409da87d75dbf 117 Gene3D G3DSA:3.40.30.10 1 117 2.6E-46 T 15-10-2018 NJ56_10865 f7c177ecbcf64c74ab7409da87d75dbf 117 SUPERFAMILY SSF52833 5 117 1.12E-33 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_10865 f7c177ecbcf64c74ab7409da87d75dbf 117 Pfam PF03960 ArsC family 7 116 6.0E-21 T 15-10-2018 IPR006660 Arsenate reductase-like NJ56_10865 f7c177ecbcf64c74ab7409da87d75dbf 117 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 6 117 1.8E-44 T 15-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 NJ56_11565 e241aac24a672d01cad5589d24fcc019 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 122 1.4E-12 T 15-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 NJ56_11565 e241aac24a672d01cad5589d24fcc019 238 SUPERFAMILY SSF161098 17 214 3.01E-34 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_11565 e241aac24a672d01cad5589d24fcc019 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 41 226 9.7E-14 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_11565 e241aac24a672d01cad5589d24fcc019 238 Gene3D G3DSA:1.10.3720.10 14 229 1.8E-40 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_11405 d91399dfa1f9339f24798e9104a68c60 160 Gene3D G3DSA:3.40.50.1240 1 160 2.8E-38 T 15-10-2018 IPR029033 Histidine phosphatase superfamily NJ56_11405 d91399dfa1f9339f24798e9104a68c60 160 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 153 3.6E-46 T 15-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 NJ56_11405 d91399dfa1f9339f24798e9104a68c60 160 SUPERFAMILY SSF53254 2 139 1.37E-15 T 15-10-2018 IPR029033 Histidine phosphatase superfamily NJ56_11405 d91399dfa1f9339f24798e9104a68c60 160 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 70 8.0E-7 T 15-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 NJ56_00750 3e33f98a7814635081ae6db1edad66bd 251 Pfam PF12395 Protein of unknown function 142 245 3.2E-21 T 15-10-2018 IPR022123 Protein of unknown function DUF3658 NJ56_00750 3e33f98a7814635081ae6db1edad66bd 251 Pfam PF08874 Domain of unknown function (DUF1835) 5 121 1.6E-17 T 15-10-2018 IPR014973 Protein of unknown function DUF1835 NJ56_01955 ad24735489881ea33e14167c4a06b3a3 188 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 121 183 3.3E-15 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_01955 ad24735489881ea33e14167c4a06b3a3 188 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 5 185 2.5E-57 T 15-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase NJ56_01955 ad24735489881ea33e14167c4a06b3a3 188 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 184 6.2E-28 T 15-10-2018 NJ56_01955 ad24735489881ea33e14167c4a06b3a3 188 Gene3D G3DSA:1.10.150.240 18 89 7.3E-46 T 15-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 NJ56_01955 ad24735489881ea33e14167c4a06b3a3 188 Gene3D G3DSA:3.40.50.1000 7 185 7.3E-46 T 15-10-2018 IPR023214 HAD superfamily NJ56_01955 ad24735489881ea33e14167c4a06b3a3 188 SUPERFAMILY SSF56784 4 185 4.01E-43 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_10545 7a8a1ce223e374ecf51c4b7474a775a4 107 SUPERFAMILY SSF89360 1 95 1.09E-32 T 15-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 NJ56_10545 7a8a1ce223e374ecf51c4b7474a775a4 107 Gene3D G3DSA:2.60.300.12 2 107 2.1E-36 T 15-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 NJ56_10545 7a8a1ce223e374ecf51c4b7474a775a4 107 Hamap MF_01429 Iron-binding protein IscA [iscA]. 1 107 38.858 T 15-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 NJ56_10545 7a8a1ce223e374ecf51c4b7474a775a4 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 1.3E-24 T 15-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 NJ56_10545 7a8a1ce223e374ecf51c4b7474a775a4 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 15-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 NJ56_10545 7a8a1ce223e374ecf51c4b7474a775a4 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 1.3E-57 T 15-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 NJ56_10545 7a8a1ce223e374ecf51c4b7474a775a4 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 2.2E-36 T 15-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 NJ56_12235 5c6fa8b4214f8762c64cede3dd411877 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 158 338 9.0E-28 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_12235 5c6fa8b4214f8762c64cede3dd411877 341 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 12 46 1.9E-7 T 15-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain NJ56_12235 5c6fa8b4214f8762c64cede3dd411877 341 Gene3D G3DSA:1.10.3720.10 130 335 3.8E-15 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_12235 5c6fa8b4214f8762c64cede3dd411877 341 SUPERFAMILY SSF161098 136 321 2.88E-17 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_15085 9c4d88f86e0da49b1bbe260e7da7a9cf 320 Gene3D G3DSA:3.50.14.10 14 281 1.7E-112 T 15-10-2018 IPR036381 Replication terminator Tus, domain 1 GO:0003677|GO:0005737|GO:0006274 NJ56_15085 9c4d88f86e0da49b1bbe260e7da7a9cf 320 SUPERFAMILY SSF56596 6 307 2.75E-116 T 15-10-2018 IPR036384 Replication terminator Tus superfamily GO:0003677|GO:0005737|GO:0006274 NJ56_15085 9c4d88f86e0da49b1bbe260e7da7a9cf 320 Pfam PF05472 DNA replication terminus site-binding protein (Ter protein) 9 306 1.9E-138 T 15-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 NJ56_15085 9c4d88f86e0da49b1bbe260e7da7a9cf 320 TIGRFAM TIGR02648 rep_term_tus: DNA replication terminus site-binding protein 10 308 5.1E-158 T 15-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 NJ56_15085 9c4d88f86e0da49b1bbe260e7da7a9cf 320 Gene3D G3DSA:3.30.54.10 174 306 1.7E-112 T 15-10-2018 NJ56_00960 4fd2006825013173060a63d74962f8a9 160 SUPERFAMILY SSF49401 35 158 2.39E-19 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_00960 4fd2006825013173060a63d74962f8a9 160 Gene3D G3DSA:2.60.40.1090 38 158 3.4E-32 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_00960 4fd2006825013173060a63d74962f8a9 160 Pfam PF00419 Fimbrial protein 27 159 3.1E-14 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_09655 a5811a20f4896cd642f7c22df6949ee7 257 Gene3D G3DSA:3.30.2350.10 1 224 1.6E-60 T 15-10-2018 NJ56_09655 a5811a20f4896cd642f7c22df6949ee7 257 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 15-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_09655 a5811a20f4896cd642f7c22df6949ee7 257 Pfam PF00849 RNA pseudouridylate synthase 10 170 2.8E-34 T 15-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_09655 a5811a20f4896cd642f7c22df6949ee7 257 SUPERFAMILY SSF55120 2 237 1.09E-61 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_04380 07ab80a0ecf134b372774ed0e3e1186e 332 PIRSF PIRSF037112 5 332 1.7E-111 T 15-10-2018 IPR017113 Antirestriction, ArdC NJ56_04380 07ab80a0ecf134b372774ed0e3e1186e 332 Pfam PF08401 Domain of unknown function (DUF1738) 20 150 8.7E-40 T 15-10-2018 IPR013610 Domain of unknown function DUF1738 NJ56_01425 49d7911cf47003f1bd93fa840c668250 204 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 25 204 1.7E-89 T 15-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 NJ56_01425 49d7911cf47003f1bd93fa840c668250 204 Gene3D G3DSA:1.20.120.80 19 204 1.0E-60 T 15-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01425 49d7911cf47003f1bd93fa840c668250 204 SUPERFAMILY SSF81452 21 202 9.42E-60 T 15-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_01425 49d7911cf47003f1bd93fa840c668250 204 Pfam PF00510 Cytochrome c oxidase subunit III 16 202 4.5E-15 T 15-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 NJ56_08405 dfc3a9116f0e46c76fa84c5d004b18f5 469 Hamap MF_00675 Uronate isomerase [uxaC]. 2 467 49.213 T 15-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 NJ56_08405 dfc3a9116f0e46c76fa84c5d004b18f5 469 SUPERFAMILY SSF51556 3 465 1.63E-178 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_08405 dfc3a9116f0e46c76fa84c5d004b18f5 469 Pfam PF02614 Glucuronate isomerase 1 465 1.5E-226 T 15-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 NJ56_08405 dfc3a9116f0e46c76fa84c5d004b18f5 469 Gene3D G3DSA:1.10.2020.10 46 137 3.1E-201 T 15-10-2018 NJ56_08405 dfc3a9116f0e46c76fa84c5d004b18f5 469 Gene3D G3DSA:3.20.20.140 7 465 3.1E-201 T 15-10-2018 NJ56_11815 d80aeb97220b2d8e915a1c16ce3ee9e5 278 SUPERFAMILY SSF48350 93 232 1.94E-7 T 15-10-2018 IPR008936 Rho GTPase activation protein GO:0007165 NJ56_11815 d80aeb97220b2d8e915a1c16ce3ee9e5 278 Gene3D G3DSA:1.10.555.10 73 262 7.5E-6 T 15-10-2018 IPR008936 Rho GTPase activation protein GO:0007165 NJ56_11735 4f9eeb75df5d7bd1846326292676f1e7 170 Pfam PF06496 Protein of unknown function (DUF1097) 8 141 3.3E-36 T 15-10-2018 IPR009476 Protein of unknown function DUF1097 NJ56_07920 a4512909aa4ee2b64131620a99a6e150 229 Pfam PF04172 LrgB-like family 14 224 1.2E-68 T 15-10-2018 IPR007300 CidB/LrgB family NJ56_02150 5c4a4e0490f7ade3defb0e8a625ee61f 386 SUPERFAMILY SSF160544 232 338 7.32E-27 T 15-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal NJ56_02150 5c4a4e0490f7ade3defb0e8a625ee61f 386 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 2 337 1.8E-115 T 15-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 NJ56_02150 5c4a4e0490f7ade3defb0e8a625ee61f 386 Pfam PF01312 FlhB HrpN YscU SpaS Family 3 334 4.3E-88 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_02150 5c4a4e0490f7ade3defb0e8a625ee61f 386 Gene3D G3DSA:3.40.1690.10 205 345 6.5E-46 T 15-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal NJ56_02150 5c4a4e0490f7ade3defb0e8a625ee61f 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 196 214 1.4E-33 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_02150 5c4a4e0490f7ade3defb0e8a625ee61f 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 216 233 1.4E-33 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_02150 5c4a4e0490f7ade3defb0e8a625ee61f 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 290 311 1.4E-33 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_02150 5c4a4e0490f7ade3defb0e8a625ee61f 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 5 27 1.4E-33 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_02150 5c4a4e0490f7ade3defb0e8a625ee61f 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 260 275 1.4E-33 T 15-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NJ56_09895 0716110d74143e4386af8fb76e0b0396 239 SMART SM01144 32 224 1.0E-72 T 15-10-2018 IPR005636 DTW NJ56_09895 0716110d74143e4386af8fb76e0b0396 239 Pfam PF03942 DTW domain 35 219 6.9E-43 T 15-10-2018 IPR005636 DTW NJ56_08785 8184c5fd639e41ecb15339380a129479 273 Pfam PF00248 Aldo/keto reductase family 202 261 1.9E-9 T 15-10-2018 IPR023210 NADP-dependent oxidoreductase domain NJ56_08785 8184c5fd639e41ecb15339380a129479 273 Pfam PF00248 Aldo/keto reductase family 18 192 9.9E-36 T 15-10-2018 IPR023210 NADP-dependent oxidoreductase domain NJ56_08785 8184c5fd639e41ecb15339380a129479 273 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 123 140 - T 15-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 NJ56_08785 8184c5fd639e41ecb15339380a129479 273 Gene3D G3DSA:3.20.20.100 1 273 5.3E-116 T 15-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily NJ56_08785 8184c5fd639e41ecb15339380a129479 273 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 229 244 - T 15-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 NJ56_08785 8184c5fd639e41ecb15339380a129479 273 PRINTS PR00069 Aldo-keto reductase signature 123 140 3.5E-44 T 15-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 NJ56_08785 8184c5fd639e41ecb15339380a129479 273 PRINTS PR00069 Aldo-keto reductase signature 157 186 3.5E-44 T 15-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 NJ56_08785 8184c5fd639e41ecb15339380a129479 273 PRINTS PR00069 Aldo-keto reductase signature 37 61 3.5E-44 T 15-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 NJ56_08785 8184c5fd639e41ecb15339380a129479 273 PRINTS PR00069 Aldo-keto reductase signature 91 109 3.5E-44 T 15-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 NJ56_08785 8184c5fd639e41ecb15339380a129479 273 PRINTS PR00069 Aldo-keto reductase signature 196 220 3.5E-44 T 15-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 NJ56_08785 8184c5fd639e41ecb15339380a129479 273 PIRSF PIRSF000097 1 269 6.1E-93 T 15-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 NJ56_08785 8184c5fd639e41ecb15339380a129479 273 SUPERFAMILY SSF51430 6 267 2.36E-87 T 15-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily NJ56_11645 855b25af038a77a108346e4540e067d8 610 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 558 574 - T 15-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 NJ56_11645 855b25af038a77a108346e4540e067d8 610 SUPERFAMILY SSF116726 232 289 1.96E-9 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_11645 855b25af038a77a108346e4540e067d8 610 Gene3D G3DSA:3.30.70.1450 324 398 4.2E-17 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_11645 855b25af038a77a108346e4540e067d8 610 Gene3D G3DSA:3.30.70.1450 229 306 2.9E-13 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_11645 855b25af038a77a108346e4540e067d8 610 SUPERFAMILY SSF116726 322 396 3.92E-18 T 15-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 NJ56_11645 855b25af038a77a108346e4540e067d8 610 Pfam PF03600 Citrate transporter 430 607 2.2E-18 T 15-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 NJ56_11645 855b25af038a77a108346e4540e067d8 610 Pfam PF02080 TrkA-C domain 231 298 4.6E-15 T 15-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NJ56_11645 855b25af038a77a108346e4540e067d8 610 Pfam PF02080 TrkA-C domain 326 395 4.6E-13 T 15-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NJ56_11645 855b25af038a77a108346e4540e067d8 610 Pfam PF03600 Citrate transporter 18 196 1.7E-37 T 15-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 NJ56_12580 0d3b503a0a3908bbba2dac12055121af 95 SMART SM00530 5 64 8.3E-6 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_12580 0d3b503a0a3908bbba2dac12055121af 95 SUPERFAMILY SSF47413 2 70 5.63E-10 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_12580 0d3b503a0a3908bbba2dac12055121af 95 Gene3D G3DSA:1.10.260.40 1 93 4.7E-17 T 15-10-2018 NJ56_13635 ace770214f6901a68da2c9e93ba349d4 232 SUPERFAMILY SSF55120 11 227 6.72E-57 T 15-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_13635 ace770214f6901a68da2c9e93ba349d4 232 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 63 77 - T 15-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_13635 ace770214f6901a68da2c9e93ba349d4 232 Pfam PF00849 RNA pseudouridylate synthase 25 181 2.2E-26 T 15-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NJ56_13635 ace770214f6901a68da2c9e93ba349d4 232 Gene3D G3DSA:3.30.2350.10 8 230 5.5E-62 T 15-10-2018 NJ56_01660 3885908a9470d5a2046eb9b1255ac055 89 Pfam PF07338 Protein of unknown function (DUF1471) 34 89 2.0E-16 T 15-10-2018 IPR010854 Domain of unknown function DUF1471 NJ56_01660 3885908a9470d5a2046eb9b1255ac055 89 Gene3D G3DSA:3.30.1660.10 20 89 1.0E-20 T 15-10-2018 IPR025543 Dodecin-like NJ56_01660 3885908a9470d5a2046eb9b1255ac055 89 SUPERFAMILY SSF159871 1 89 2.09E-23 T 15-10-2018 IPR036275 YdgH-like superfamily NJ56_00635 c2096a7ede35e224d44c78ba9383c1f0 241 SUPERFAMILY SSF52540 1 235 1.49E-77 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_00635 c2096a7ede35e224d44c78ba9383c1f0 241 PIRSF PIRSF039085 1 241 6.2E-105 T 15-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 NJ56_00635 c2096a7ede35e224d44c78ba9383c1f0 241 SMART SM00382 26 213 6.7E-13 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_00635 c2096a7ede35e224d44c78ba9383c1f0 241 Gene3D G3DSA:3.40.50.300 1 240 1.2E-76 T 15-10-2018 NJ56_00635 c2096a7ede35e224d44c78ba9383c1f0 241 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_00635 c2096a7ede35e224d44c78ba9383c1f0 241 Pfam PF00005 ABC transporter 17 165 1.4E-33 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_10080 91e7a2be5ce497e7d14289fddf6d4902 1434 Pfam PF12255 Insecticide toxin TcdB middle/C-terminal region 867 1003 3.1E-49 T 15-10-2018 IPR022044 Insecticide toxin TcdB middle/C-terminal NJ56_10080 91e7a2be5ce497e7d14289fddf6d4902 1434 SUPERFAMILY SSF69318 436 688 2.35E-15 T 15-10-2018 NJ56_10080 91e7a2be5ce497e7d14289fddf6d4902 1434 Pfam PF12256 Insecticide toxin TcdB middle/N-terminal region 644 796 1.0E-26 T 15-10-2018 IPR022045 Insecticide toxin TcdB middle/N-terminal NJ56_10080 91e7a2be5ce497e7d14289fddf6d4902 1434 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 29 50 6.3E-34 T 15-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 NJ56_10080 91e7a2be5ce497e7d14289fddf6d4902 1434 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 127 145 6.3E-34 T 15-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 NJ56_10080 91e7a2be5ce497e7d14289fddf6d4902 1434 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 88 104 6.3E-34 T 15-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 NJ56_10080 91e7a2be5ce497e7d14289fddf6d4902 1434 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 301 319 6.3E-34 T 15-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 NJ56_10080 91e7a2be5ce497e7d14289fddf6d4902 1434 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 191 209 6.3E-34 T 15-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 NJ56_10080 91e7a2be5ce497e7d14289fddf6d4902 1434 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 266 285 6.3E-34 T 15-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 NJ56_10080 91e7a2be5ce497e7d14289fddf6d4902 1434 Pfam PF03534 Salmonella virulence plasmid 65kDa B protein 32 319 1.2E-86 T 15-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 NJ56_00170 c9bc648217107c0df1afb94b52d0b5fb 46 Hamap MF_01484 Multidrug efflux pump accessory protein AcrZ [acrZ]. 1 46 18.612 T 15-10-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 NJ56_00170 c9bc648217107c0df1afb94b52d0b5fb 46 Pfam PF10766 Multidrug efflux pump-associated protein AcrZ 2 46 4.1E-29 T 15-10-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 NJ56_02155 53ceaebc387817db0b91057dfa1c8107 264 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 15 260 1.6E-73 T 15-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 NJ56_02155 53ceaebc387817db0b91057dfa1c8107 264 Pfam PF01311 Bacterial export proteins, family 1 21 242 4.5E-43 T 15-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NJ56_02155 53ceaebc387817db0b91057dfa1c8107 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 29 50 5.9E-23 T 15-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NJ56_02155 53ceaebc387817db0b91057dfa1c8107 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 187 209 5.9E-23 T 15-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NJ56_02155 53ceaebc387817db0b91057dfa1c8107 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 88 107 5.9E-23 T 15-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NJ56_02155 53ceaebc387817db0b91057dfa1c8107 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 209 228 5.9E-23 T 15-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NJ56_08850 84b517d0c825e5dd47063925cac58f20 428 Gene3D G3DSA:3.30.450.380 1 168 2.0E-35 T 15-10-2018 NJ56_08850 84b517d0c825e5dd47063925cac58f20 428 Gene3D G3DSA:3.40.50.300 170 407 2.6E-72 T 15-10-2018 NJ56_08850 84b517d0c825e5dd47063925cac58f20 428 Pfam PF00437 Type II/IV secretion system protein 74 349 1.4E-79 T 15-10-2018 IPR001482 Type II/IV secretion system protein NJ56_08850 84b517d0c825e5dd47063925cac58f20 428 SUPERFAMILY SSF52540 59 356 2.72E-58 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_01865 571be4fd1bdfbf8ac18f58787c133abe 243 Pfam PF13525 Outer membrane lipoprotein 28 236 3.4E-83 T 15-10-2018 IPR039565 Outer membrane lipoprotein BamD-like NJ56_01865 571be4fd1bdfbf8ac18f58787c133abe 243 SUPERFAMILY SSF48452 27 119 1.14E-8 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_01865 571be4fd1bdfbf8ac18f58787c133abe 243 Gene3D G3DSA:1.25.40.10 29 243 1.7E-62 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_01865 571be4fd1bdfbf8ac18f58787c133abe 243 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 241 2.1E-88 T 15-10-2018 IPR017689 Outer membrane protein assembly factor BamD NJ56_01865 571be4fd1bdfbf8ac18f58787c133abe 243 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 4 242 38.587 T 15-10-2018 IPR017689 Outer membrane protein assembly factor BamD NJ56_09440 74dd3eb66b2d87b47c3669d90e9a9bd6 214 SUPERFAMILY SSF52833 5 193 2.07E-29 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_09440 74dd3eb66b2d87b47c3669d90e9a9bd6 214 Gene3D G3DSA:3.40.30.10 1 214 8.6E-51 T 15-10-2018 NJ56_09440 74dd3eb66b2d87b47c3669d90e9a9bd6 214 Pfam PF01323 DSBA-like thioredoxin domain 9 186 8.5E-9 T 15-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 NJ56_02330 163cba2dfd6ed98efe8d1a0718364395 213 Pfam PF01583 Adenylylsulphate kinase 39 191 3.1E-70 T 15-10-2018 NJ56_02330 163cba2dfd6ed98efe8d1a0718364395 213 Gene3D G3DSA:3.40.50.300 17 213 1.2E-75 T 15-10-2018 NJ56_02330 163cba2dfd6ed98efe8d1a0718364395 213 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 22 205 1.3E-82 T 15-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 NJ56_02330 163cba2dfd6ed98efe8d1a0718364395 213 SUPERFAMILY SSF52540 36 207 7.97E-34 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_02330 163cba2dfd6ed98efe8d1a0718364395 213 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 38 209 37.284 T 15-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 NJ56_02720 902a2d75e83abf886c638a3cf8f8c1fd 400 Pfam PF01098 Cell cycle protein 33 387 2.6E-122 T 15-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02720 902a2d75e83abf886c638a3cf8f8c1fd 400 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 29 396 41.766 T 15-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02720 902a2d75e83abf886c638a3cf8f8c1fd 400 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 345 369 - T 15-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02720 902a2d75e83abf886c638a3cf8f8c1fd 400 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 31 386 6.9E-133 T 15-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_13350 410df1d617d996bd018eccf44f30c1cf 157 Pfam PF05926 Phage head completion protein (GPL) 19 157 1.1E-46 T 15-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 NJ56_02030 de83b515d132b0b8cc6ab4de206dfd39 160 SUPERFAMILY SSF46894 36 111 1.53E-7 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_02030 de83b515d132b0b8cc6ab4de206dfd39 160 Gene3D G3DSA:1.10.10.10 13 134 5.9E-8 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_02030 de83b515d132b0b8cc6ab4de206dfd39 160 SMART SM00862 37 111 0.0014 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_02275 4b19d3e5752996ebd187627d8aa03fe8 80 Pfam PF01627 Hpt domain 5 70 1.2E-8 T 15-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 NJ56_02275 4b19d3e5752996ebd187627d8aa03fe8 80 Gene3D G3DSA:1.20.120.160 3 80 2.3E-8 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_02275 4b19d3e5752996ebd187627d8aa03fe8 80 SUPERFAMILY SSF47226 4 63 1.7E-8 T 15-10-2018 IPR036641 HPT domain superfamily GO:0000160 NJ56_06325 717920411da1a8c6b04931ed08f4fff7 259 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 116 3.1E-15 T 15-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 NJ56_06325 717920411da1a8c6b04931ed08f4fff7 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 223 8.8E-19 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_06325 717920411da1a8c6b04931ed08f4fff7 259 Gene3D G3DSA:1.10.3720.10 17 226 1.3E-45 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_06325 717920411da1a8c6b04931ed08f4fff7 259 SUPERFAMILY SSF161098 23 209 4.58E-41 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_14335 2154d07b0f15b89e5cefb706e4cbd59f 326 Pfam PF00535 Glycosyl transferase family 2 11 171 5.2E-30 T 15-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 NJ56_14335 2154d07b0f15b89e5cefb706e4cbd59f 326 Gene3D G3DSA:3.90.550.10 2 229 8.8E-39 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_14335 2154d07b0f15b89e5cefb706e4cbd59f 326 Hamap MF_01164 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [arnC]. 2 326 61.242 T 15-10-2018 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 KEGG: 00520+2.4.2.53 NJ56_14335 2154d07b0f15b89e5cefb706e4cbd59f 326 SUPERFAMILY SSF53448 4 229 1.21E-37 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_16500 6249848d4b68864fbd934e6a09e2db97 335 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 12 200 1.8E-61 T 15-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_16500 6249848d4b68864fbd934e6a09e2db97 335 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 207 321 7.7E-45 T 15-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NJ56_16500 6249848d4b68864fbd934e6a09e2db97 335 Pfam PF13177 DNA polymerase III, delta subunit 9 166 9.6E-42 T 15-10-2018 NJ56_16500 6249848d4b68864fbd934e6a09e2db97 335 Gene3D G3DSA:3.40.50.300 1 166 7.0E-49 T 15-10-2018 NJ56_16500 6249848d4b68864fbd934e6a09e2db97 335 Gene3D G3DSA:1.20.272.10 208 328 1.6E-43 T 15-10-2018 NJ56_16500 6249848d4b68864fbd934e6a09e2db97 335 SUPERFAMILY SSF48019 208 324 4.59E-36 T 15-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 NJ56_16500 6249848d4b68864fbd934e6a09e2db97 335 SUPERFAMILY SSF52540 1 206 4.56E-45 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15785 2dda6159312acaaa0da62e20cc9ef63d 144 Hamap MF_01598 Spermidine export protein MdtJ [mdtJ]. 1 144 32.263 T 15-10-2018 IPR023740 Spermidine export protein MdtJ GO:0005886|GO:0015606|GO:0015848 NJ56_15785 2dda6159312acaaa0da62e20cc9ef63d 144 SUPERFAMILY SSF103481 6 107 5.89E-17 T 15-10-2018 NJ56_15785 2dda6159312acaaa0da62e20cc9ef63d 144 Pfam PF00893 Small Multidrug Resistance protein 3 93 8.0E-23 T 15-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 NJ56_15785 2dda6159312acaaa0da62e20cc9ef63d 144 Gene3D G3DSA:1.10.3730.20 1 109 4.3E-29 T 15-10-2018 NJ56_04855 93a1fc0784d5b8366eb7a48111a690bf 177 Gene3D G3DSA:3.40.50.360 3 115 7.8E-9 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_04855 93a1fc0784d5b8366eb7a48111a690bf 177 Pfam PF12724 Flavodoxin domain 4 151 1.3E-51 T 15-10-2018 IPR026816 Flavodoxin domain NJ56_04855 93a1fc0784d5b8366eb7a48111a690bf 177 SUPERFAMILY SSF52218 1 170 1.77E-30 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_00045 7b0012af5b109cd8b77db0613fafd51e 391 Pfam PF12698 ABC-2 family transporter protein 44 383 2.2E-40 T 15-10-2018 NJ56_14380 dc88aeccd66d13993b5c582c04387c77 255 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_14380 dc88aeccd66d13993b5c582c04387c77 255 SUPERFAMILY SSF52540 1 228 1.09E-55 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_14380 dc88aeccd66d13993b5c582c04387c77 255 Gene3D G3DSA:3.40.50.300 1 255 1.6E-74 T 15-10-2018 NJ56_14380 dc88aeccd66d13993b5c582c04387c77 255 Pfam PF00005 ABC transporter 17 165 3.4E-26 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_14380 dc88aeccd66d13993b5c582c04387c77 255 SMART SM00382 25 214 5.7E-15 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_02825 40ffa1d5b99616d782e97ee7849e820a 393 SUPERFAMILY SSF103473 10 391 6.15E-49 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_02825 40ffa1d5b99616d782e97ee7849e820a 393 Gene3D G3DSA:1.20.1250.20 210 392 4.3E-17 T 15-10-2018 NJ56_02825 40ffa1d5b99616d782e97ee7849e820a 393 Pfam PF07690 Major Facilitator Superfamily 19 346 7.9E-31 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_02825 40ffa1d5b99616d782e97ee7849e820a 393 Gene3D G3DSA:1.20.1250.20 11 201 1.4E-21 T 15-10-2018 NJ56_16895 01057c167f4db866ed94947fcb167d26 472 SMART SM01150 13 414 5.5E-220 T 15-10-2018 IPR009770 Domain of unknown function DUF1338 NJ56_16895 01057c167f4db866ed94947fcb167d26 472 Gene3D G3DSA:3.10.180.80 4 451 2.0E-190 T 15-10-2018 NJ56_16895 01057c167f4db866ed94947fcb167d26 472 Pfam PF07063 Domain of unknown function (DUF1338) 11 414 1.4E-117 T 15-10-2018 IPR009770 Domain of unknown function DUF1338 NJ56_16455 fe27697b47379ad9d1d7e992a90638a8 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 1.0E-7 T 15-10-2018 NJ56_16455 fe27697b47379ad9d1d7e992a90638a8 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.0E-7 T 15-10-2018 NJ56_16455 fe27697b47379ad9d1d7e992a90638a8 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 1.0E-7 T 15-10-2018 NJ56_16455 fe27697b47379ad9d1d7e992a90638a8 434 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 338 1.1E-65 T 15-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NJ56_16455 fe27697b47379ad9d1d7e992a90638a8 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 115 133 2.7E-15 T 15-10-2018 NJ56_16455 fe27697b47379ad9d1d7e992a90638a8 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 2.7E-15 T 15-10-2018 NJ56_16455 fe27697b47379ad9d1d7e992a90638a8 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.7E-15 T 15-10-2018 NJ56_16455 fe27697b47379ad9d1d7e992a90638a8 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 2.7E-15 T 15-10-2018 NJ56_16455 fe27697b47379ad9d1d7e992a90638a8 434 Gene3D G3DSA:3.50.50.100 1 409 1.7E-117 T 15-10-2018 NJ56_16455 fe27697b47379ad9d1d7e992a90638a8 434 SUPERFAMILY SSF51905 3 339 5.1E-33 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_17410 5244a147e3cec94ba03d64a46156ead3 284 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 278 6.2E-117 T 15-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 NJ56_17410 5244a147e3cec94ba03d64a46156ead3 284 Gene3D G3DSA:3.40.50.1820 5 280 5.0E-89 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_17410 5244a147e3cec94ba03d64a46156ead3 284 SUPERFAMILY SSF53474 5 279 1.28E-85 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_17410 5244a147e3cec94ba03d64a46156ead3 284 Pfam PF00756 Putative esterase 26 261 4.7E-66 T 15-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 NJ56_15575 cb59ff7f5bb69172c4714fe591c95fe5 348 Gene3D G3DSA:3.90.650.10 164 347 1.9E-54 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_15575 cb59ff7f5bb69172c4714fe591c95fe5 348 Pfam PF02769 AIR synthase related protein, C-terminal domain 169 337 6.7E-28 T 15-10-2018 IPR010918 PurM-like, C-terminal domain NJ56_15575 cb59ff7f5bb69172c4714fe591c95fe5 348 Gene3D G3DSA:3.30.1330.10 3 162 8.5E-48 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_15575 cb59ff7f5bb69172c4714fe591c95fe5 348 SUPERFAMILY SSF55326 7 160 7.63E-41 T 15-10-2018 IPR036921 PurM-like, N-terminal domain superfamily NJ56_15575 cb59ff7f5bb69172c4714fe591c95fe5 348 Pfam PF00586 AIR synthase related protein, N-terminal domain 50 157 2.0E-18 T 15-10-2018 IPR016188 PurM-like, N-terminal domain NJ56_15575 cb59ff7f5bb69172c4714fe591c95fe5 348 Hamap MF_00625 Selenide, water dikinase [selD]. 5 347 46.091 T 15-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 NJ56_15575 cb59ff7f5bb69172c4714fe591c95fe5 348 PIRSF PIRSF036407 2 347 4.2E-120 T 15-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 NJ56_15575 cb59ff7f5bb69172c4714fe591c95fe5 348 TIGRFAM TIGR00476 selD: selenide, water dikinase 7 312 2.6E-138 T 15-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 NJ56_15575 cb59ff7f5bb69172c4714fe591c95fe5 348 SUPERFAMILY SSF56042 164 336 3.4E-51 T 15-10-2018 IPR036676 PurM-like, C-terminal domain superfamily NJ56_07075 bd2d0d615eca5113facfe61132beaf75 286 Pfam PF11104 Type IV pilus assembly protein PilM; 9 167 1.3E-16 T 15-10-2018 IPR005883 Type IV pilus assembly protein PilM NJ56_07075 bd2d0d615eca5113facfe61132beaf75 286 Gene3D G3DSA:3.30.420.40 8 170 8.0E-12 T 15-10-2018 NJ56_07075 bd2d0d615eca5113facfe61132beaf75 286 Gene3D G3DSA:3.30.1490.300 82 137 8.0E-12 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 4.7E-14 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 4.7E-14 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 4.7E-14 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 SUPERFAMILY SSF52317 3 191 5.2E-46 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 Gene3D G3DSA:3.40.50.880 1 193 2.2E-58 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 Pfam PF00117 Glutamine amidotransferase class-I 6 186 3.0E-44 T 15-10-2018 IPR017926 Glutamine amidotransferase NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 PRINTS PR00097 Anthranilate synthase component II signature 124 136 1.1E-36 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 PRINTS PR00097 Anthranilate synthase component II signature 52 61 1.1E-36 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 PRINTS PR00097 Anthranilate synthase component II signature 4 18 1.1E-36 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 PRINTS PR00097 Anthranilate synthase component II signature 79 90 1.1E-36 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 PRINTS PR00097 Anthranilate synthase component II signature 166 179 1.1E-36 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 PRINTS PR00097 Anthranilate synthase component II signature 104 112 1.1E-36 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 2.8E-6 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 2.8E-6 T 15-10-2018 NJ56_15305 82c4cdf70c9a5c3e1498eec36ac06103 197 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 186 8.3E-55 T 15-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 NJ56_08820 97b6aeae01c266b9155d922d155ce2bb 465 SUPERFAMILY SSF53300 167 448 1.72E-8 T 15-10-2018 IPR036465 von Willebrand factor A-like domain superfamily NJ56_10280 a565bce1e3a3ab78a3bcc4acc4c0a659 292 Hamap MF_00361 NAD kinase [nadK]. 6 287 33.731 T 15-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 NJ56_10280 a565bce1e3a3ab78a3bcc4acc4c0a659 292 Gene3D G3DSA:3.40.50.10330 23 287 1.9E-100 T 15-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 NJ56_10280 a565bce1e3a3ab78a3bcc4acc4c0a659 292 Pfam PF01513 ATP-NAD kinase 8 271 2.4E-76 T 15-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 NJ56_10280 a565bce1e3a3ab78a3bcc4acc4c0a659 292 SUPERFAMILY SSF111331 8 289 9.03E-94 T 15-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily NJ56_10280 a565bce1e3a3ab78a3bcc4acc4c0a659 292 Gene3D G3DSA:2.60.200.30 128 264 1.9E-100 T 15-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 NJ56_11100 132afc586c0439656673d27baf58dc5f 160 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 3.4E-46 T 15-10-2018 IPR004375 YhcH/YjgK/YiaL family NJ56_11100 132afc586c0439656673d27baf58dc5f 160 Pfam PF04074 Domain of unknown function (DUF386) 1 150 3.9E-42 T 15-10-2018 IPR004375 YhcH/YjgK/YiaL family NJ56_11100 132afc586c0439656673d27baf58dc5f 160 Gene3D G3DSA:2.60.120.370 1 154 8.5E-45 T 15-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily NJ56_11100 132afc586c0439656673d27baf58dc5f 160 SUPERFAMILY SSF51197 1 153 3.84E-46 T 15-10-2018 NJ56_01670 517788956be6d75a5f4653e66dd7bc26 84 SUPERFAMILY SSF90123 11 74 2.88E-5 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_15345 faee0d44be2411f05bde93a5350dfa6f 254 Pfam PF06790 Uncharacterised protein family (UPF0259) 1 247 1.6E-91 T 15-10-2018 IPR009627 Uncharacterised protein family UPF0259 NJ56_15345 faee0d44be2411f05bde93a5350dfa6f 254 Hamap MF_01067 UPF0259 membrane protein YciC [yciC]. 1 249 22.348 T 15-10-2018 IPR009627 Uncharacterised protein family UPF0259 NJ56_01500 c628b08b2342835f1cce708f046f4770 165 Pfam PF04608 Phosphatidylglycerophosphatase A 15 153 1.9E-53 T 15-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 NJ56_01500 c628b08b2342835f1cce708f046f4770 165 PIRSF PIRSF006162 4 163 7.7E-61 T 15-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 NJ56_01500 c628b08b2342835f1cce708f046f4770 165 SUPERFAMILY SSF101307 8 153 9.16E-50 T 15-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 NJ56_02730 d4855fe4bd68bc0500dcdf9daca579a1 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 15-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02730 d4855fe4bd68bc0500dcdf9daca579a1 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 7.3E-159 T 15-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02730 d4855fe4bd68bc0500dcdf9daca579a1 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 9.3E-6 T 15-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02730 d4855fe4bd68bc0500dcdf9daca579a1 360 Pfam PF00953 Glycosyl transferase family 4 99 284 1.1E-36 T 15-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 NJ56_02730 d4855fe4bd68bc0500dcdf9daca579a1 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.997 T 15-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_02730 d4855fe4bd68bc0500dcdf9daca579a1 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 15-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 NJ56_12575 b30c07a09f2e9a37fd9439afe3827229 90 Pfam PF13693 Winged helix-turn-helix DNA-binding 11 84 2.8E-37 T 15-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain NJ56_12575 b30c07a09f2e9a37fd9439afe3827229 90 SUPERFAMILY SSF47413 7 75 1.02E-28 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_12575 b30c07a09f2e9a37fd9439afe3827229 90 Gene3D G3DSA:1.10.260.40 5 75 6.4E-32 T 15-10-2018 NJ56_17135 92e09a077f2fb6faa8fd4404624af5da 321 SUPERFAMILY SSF161098 33 312 1.87E-56 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17135 92e09a077f2fb6faa8fd4404624af5da 321 Gene3D G3DSA:1.10.3720.10 33 317 8.7E-55 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17135 92e09a077f2fb6faa8fd4404624af5da 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 317 4.4E-22 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_16760 55f7807ce6c466f5d448b52207693315 55 Pfam PF04957 Ribosome modulation factor 1 52 3.2E-30 T 15-10-2018 IPR007040 Ribosome modulation factor NJ56_16760 55f7807ce6c466f5d448b52207693315 55 Hamap MF_00919 Ribosome modulation factor [rmf]. 1 55 30.369 T 15-10-2018 IPR007040 Ribosome modulation factor NJ56_16760 55f7807ce6c466f5d448b52207693315 55 Gene3D G3DSA:1.10.10.620 1 55 1.7E-29 T 15-10-2018 IPR023200 Ribosome modulation factor domain superfamily NJ56_16760 55f7807ce6c466f5d448b52207693315 55 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 55 9.0E-25 T 15-10-2018 IPR007040 Ribosome modulation factor NJ56_07855 ab117a93b469328f294e315aae788b81 72 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 64 2.0E-25 T 15-10-2018 IPR014318 Phage shock protein, PspG NJ56_07855 ab117a93b469328f294e315aae788b81 72 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 2 65 3.4E-27 T 15-10-2018 IPR014318 Phage shock protein, PspG NJ56_03885 7cf9f6c6b37a36f1ae85f6569ed356ab 115 Pfam PF02316 Mu DNA-binding domain 9 61 1.1E-13 T 15-10-2018 IPR003314 Mu-type HTH domain GO:0003677 NJ56_03885 7cf9f6c6b37a36f1ae85f6569ed356ab 115 SUPERFAMILY SSF46955 3 70 4.94E-22 T 15-10-2018 IPR009061 Putative DNA-binding domain superfamily NJ56_03885 7cf9f6c6b37a36f1ae85f6569ed356ab 115 Gene3D G3DSA:1.10.10.10 2 73 1.1E-25 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_04700 0e8d6148bc54253ad14a13126214bd82 232 Pfam PF04493 Endonuclease V 18 207 1.4E-71 T 15-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 NJ56_04700 0e8d6148bc54253ad14a13126214bd82 232 Hamap MF_00801 Endonuclease V [nfi]. 3 217 33.366 T 15-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 NJ56_04700 0e8d6148bc54253ad14a13126214bd82 232 Gene3D G3DSA:3.30.2170.10 1 215 3.9E-81 T 15-10-2018 NJ56_08845 a325379a1a272d10c97d0e7000b54707 165 Pfam PF00482 Type II secretion system (T2SS), protein F 1 122 1.6E-16 T 15-10-2018 IPR018076 Type II secretion system F domain NJ56_12160 886a16964cf3a928d09e6c95996a7e63 193 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 10 191 9.0E-39 T 15-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 NJ56_08440 da255a57eedf78304e0239ef543b172a 168 Gene3D G3DSA:3.30.2010.10 55 161 4.4E-7 T 15-10-2018 NJ56_08440 da255a57eedf78304e0239ef543b172a 168 Pfam PF01863 Protein of unknown function DUF45 9 149 2.9E-11 T 15-10-2018 IPR002725 Protein of unknown function DUF45 NJ56_16855 2cbcfc8579dc1c04360387fd31b19b2e 440 Gene3D G3DSA:1.10.225.40 353 440 1.4E-42 T 15-10-2018 IPR038198 MukF, C-terminal domain superfamily NJ56_16855 2cbcfc8579dc1c04360387fd31b19b2e 440 Pfam PF17193 MukF C-terminal domain 283 440 1.4E-79 T 15-10-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain NJ56_16855 2cbcfc8579dc1c04360387fd31b19b2e 440 SUPERFAMILY SSF46785 8 118 6.53E-49 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_16855 2cbcfc8579dc1c04360387fd31b19b2e 440 Gene3D G3DSA:1.20.58.590 119 311 1.0E-86 T 15-10-2018 IPR036141 MukF, middle domain superfamily NJ56_16855 2cbcfc8579dc1c04360387fd31b19b2e 440 PIRSF PIRSF018282 1 440 3.1E-247 T 15-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 NJ56_16855 2cbcfc8579dc1c04360387fd31b19b2e 440 Pfam PF17192 MukF middle domain 121 281 4.7E-84 T 15-10-2018 IPR033440 Chromosome partition protein MukF, middle domain NJ56_16855 2cbcfc8579dc1c04360387fd31b19b2e 440 SUPERFAMILY SSF140570 119 281 1.14E-75 T 15-10-2018 IPR036141 MukF, middle domain superfamily NJ56_16855 2cbcfc8579dc1c04360387fd31b19b2e 440 Pfam PF03882 MukF winged-helix domain 3 117 7.8E-58 T 15-10-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain NJ56_16855 2cbcfc8579dc1c04360387fd31b19b2e 440 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 1 440 55.423 T 15-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 NJ56_16855 2cbcfc8579dc1c04360387fd31b19b2e 440 Gene3D G3DSA:1.10.10.10 24 118 1.3E-52 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_12570 e7120d27ba94a176b55c2255a6caea78 537 SMART SM00974 408 491 3.1E-29 T 15-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding NJ56_12570 e7120d27ba94a176b55c2255a6caea78 537 Pfam PF13250 Domain of unknown function (DUF4041) 238 289 5.2E-19 T 15-10-2018 IPR025280 Domain of unknown function DUF4041 NJ56_12570 e7120d27ba94a176b55c2255a6caea78 537 Pfam PF10544 T5orf172 domain 398 488 9.9E-14 T 15-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding NJ56_01555 65487e058a3a3b5aff2b768b06a866e6 193 PIRSF PIRSF011489 1 193 3.6E-79 T 15-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 NJ56_01555 65487e058a3a3b5aff2b768b06a866e6 193 Pfam PF04336 Acyl carrier protein phosphodiesterase 81 185 2.2E-31 T 15-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 NJ56_01555 65487e058a3a3b5aff2b768b06a866e6 193 Hamap MF_01950 Acyl carrier protein phosphodiesterase [acpH]. 1 193 54.196 T 15-10-2018 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 NJ56_16880 29e3a2e96dc3a64877e9019be85979ff 60 Gene3D G3DSA:2.20.25.10 8 60 2.4E-23 T 15-10-2018 NJ56_16880 29e3a2e96dc3a64877e9019be85979ff 60 Pfam PF03966 Trm112p-like protein 2 41 1.6E-9 T 15-10-2018 IPR005651 Trm112-like NJ56_16880 29e3a2e96dc3a64877e9019be85979ff 60 SUPERFAMILY SSF158997 1 54 6.15E-20 T 15-10-2018 NJ56_16880 29e3a2e96dc3a64877e9019be85979ff 60 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 26.895 T 15-10-2018 IPR038053 Uncharacterised protein family UPF0434 NJ56_08965 973f738decd84fc3f2abf36b3c2153f0 501 ProSitePatterns PS00455 Putative AMP-binding domain signature. 159 170 - T 15-10-2018 IPR020845 AMP-binding, conserved site NJ56_08965 973f738decd84fc3f2abf36b3c2153f0 501 Pfam PF00501 AMP-binding enzyme 14 398 1.2E-73 T 15-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 NJ56_08965 973f738decd84fc3f2abf36b3c2153f0 501 Gene3D G3DSA:3.30.300.30 395 499 2.0E-15 T 15-10-2018 NJ56_08965 973f738decd84fc3f2abf36b3c2153f0 501 Gene3D G3DSA:3.40.50.12780 5 392 1.4E-97 T 15-10-2018 NJ56_08965 973f738decd84fc3f2abf36b3c2153f0 501 SUPERFAMILY SSF56801 7 496 1.31E-111 T 15-10-2018 NJ56_10075 330d7c3af83710dca58a1fd71b6026bd 975 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 600 680 2.7E-26 T 15-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 NJ56_10075 330d7c3af83710dca58a1fd71b6026bd 975 Gene3D G3DSA:2.180.10.10 1 680 3.1E-242 T 15-10-2018 NJ56_03015 f486adc9f8998413b45eb1bfd9b6dcc3 437 SUPERFAMILY SSF103473 8 420 9.02E-60 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_03015 f486adc9f8998413b45eb1bfd9b6dcc3 437 Pfam PF07690 Major Facilitator Superfamily 28 385 4.6E-24 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_03015 f486adc9f8998413b45eb1bfd9b6dcc3 437 Gene3D G3DSA:1.20.1250.20 13 425 1.0E-58 T 15-10-2018 NJ56_11080 06f3db53aa7d194f71c600430fb2967e 299 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 296 9.0E-86 T 15-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 NJ56_11080 06f3db53aa7d194f71c600430fb2967e 299 Pfam PF04261 Dyp-type peroxidase family 5 295 5.0E-93 T 15-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 NJ56_11080 06f3db53aa7d194f71c600430fb2967e 299 SUPERFAMILY SSF54909 1 297 3.4E-92 T 15-10-2018 IPR011008 Dimeric alpha-beta barrel NJ56_14630 9c752cda4765e50b6755a5adb48cc4bd 87 ProDom PD063639 YJBD CYTOPLASMIC STY4411 YPO2363 ECS5006 Y1969 1 87 2.0E-23 T 15-10-2018 IPR020317 Uncharacterised protein family YjbD NJ56_14630 9c752cda4765e50b6755a5adb48cc4bd 87 Pfam PF11656 YjbD family (DUF3811) 1 87 3.1E-36 T 15-10-2018 IPR020317 Uncharacterised protein family YjbD NJ56_03410 e72ebc3eb1b314c3bf535ad5935cb77e 76 Pfam PF13708 Domain of unknown function (DUF4942) 2 70 4.7E-17 T 15-10-2018 IPR031339 Domain of unknown function DUF4942 NJ56_04320 58c62e54445aeb9b8278877066114a46 87 Gene3D G3DSA:3.10.20.30 1 87 2.5E-16 T 15-10-2018 IPR012675 Beta-grasp domain superfamily NJ56_04320 58c62e54445aeb9b8278877066114a46 87 Pfam PF02597 ThiS family 7 87 1.1E-8 T 15-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 NJ56_04320 58c62e54445aeb9b8278877066114a46 87 SUPERFAMILY SSF54285 2 87 3.92E-11 T 15-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp NJ56_04220 76d00455be9f8109cfafe07d190f998f 304 Gene3D G3DSA:2.60.40.1090 161 303 4.5E-6 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_04220 76d00455be9f8109cfafe07d190f998f 304 SUPERFAMILY SSF49401 171 303 9.94E-10 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_04220 76d00455be9f8109cfafe07d190f998f 304 Pfam PF00419 Fimbrial protein 166 303 1.7E-8 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_14655 a78faa3c913da64d3dc66a94fcf36c24 101 Pfam PF13591 MerR HTH family regulatory protein 9 91 1.9E-23 T 15-10-2018 NJ56_14655 a78faa3c913da64d3dc66a94fcf36c24 101 Gene3D G3DSA:1.10.1660.10 1 100 1.2E-27 T 15-10-2018 NJ56_17490 0b3dbbdf50b25b14b6f40f3325ed8891 318 Pfam PF00591 Glycosyl transferase family, a/b domain 94 236 1.2E-5 T 15-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_17490 0b3dbbdf50b25b14b6f40f3325ed8891 318 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 68 5.0E-10 T 15-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_17490 0b3dbbdf50b25b14b6f40f3325ed8891 318 Gene3D G3DSA:3.40.1030.10 73 317 5.1E-97 T 15-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_17490 0b3dbbdf50b25b14b6f40f3325ed8891 318 SUPERFAMILY SSF47648 7 71 1.11E-14 T 15-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_17490 0b3dbbdf50b25b14b6f40f3325ed8891 318 SUPERFAMILY SSF52418 80 315 1.73E-44 T 15-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 NJ56_17490 0b3dbbdf50b25b14b6f40f3325ed8891 318 Gene3D G3DSA:1.20.970.10 1 72 1.3E-31 T 15-10-2018 NJ56_17525 7460f310059986604c02232e69a2481a 260 Gene3D G3DSA:1.10.3720.10 51 249 3.0E-28 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17525 7460f310059986604c02232e69a2481a 260 SUPERFAMILY SSF161098 53 242 1.7E-34 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17525 7460f310059986604c02232e69a2481a 260 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 77 247 6.0E-22 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_12030 c23099a561dd9939fc0aee489c880c94 114 TIGRFAM TIGR01594 holin_lambda: phage holin, lambda family 1 105 3.4E-30 T 15-10-2018 IPR006481 Bacteriophage lambda, GpS, holin NJ56_12030 c23099a561dd9939fc0aee489c880c94 114 Pfam PF05106 Phage holin family (Lysis protein S) 3 103 2.9E-32 T 15-10-2018 IPR006481 Bacteriophage lambda, GpS, holin NJ56_15270 db974194cd9307d7dfe7a5136bb0e35d 348 Gene3D G3DSA:3.40.1750.20 201 265 4.9E-42 T 15-10-2018 NJ56_15270 db974194cd9307d7dfe7a5136bb0e35d 348 SUPERFAMILY SSF52096 95 298 4.98E-31 T 15-10-2018 IPR029045 ClpP/crotonase-like domain superfamily NJ56_15270 db974194cd9307d7dfe7a5136bb0e35d 348 Pfam PF01343 Peptidase family S49 161 306 1.7E-45 T 15-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 NJ56_15270 db974194cd9307d7dfe7a5136bb0e35d 348 Gene3D G3DSA:3.90.226.10 104 300 4.9E-42 T 15-10-2018 NJ56_15270 db974194cd9307d7dfe7a5136bb0e35d 348 Pfam PF08496 Peptidase family S49 N-terminal 2 157 1.1E-57 T 15-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 NJ56_12545 10557b3eca8843db174d3996fe1e5383 93 Pfam PF04956 TrbC/VIRB2 family 8 89 2.2E-14 T 15-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 NJ56_10410 e1c1196297ac518f8ad905bdde4db596 161 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 46 83 - T 15-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 NJ56_10410 e1c1196297ac518f8ad905bdde4db596 161 SUPERFAMILY SSF53927 1 146 4.44E-55 T 15-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 NJ56_10410 e1c1196297ac518f8ad905bdde4db596 161 Pfam PF14437 MafB19-like deaminase 1 142 1.2E-31 T 15-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 NJ56_10410 e1c1196297ac518f8ad905bdde4db596 161 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 1 142 48.146 T 15-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 NJ56_10410 e1c1196297ac518f8ad905bdde4db596 161 Gene3D G3DSA:3.40.140.10 1 155 5.9E-64 T 15-10-2018 NJ56_16345 5c725019463fce923656cc6720f21210 479 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 11 25 - T 15-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site NJ56_16345 5c725019463fce923656cc6720f21210 479 SUPERFAMILY SSF51445 5 472 1.13E-159 T 15-10-2018 IPR017853 Glycoside hydrolase superfamily NJ56_16345 5c725019463fce923656cc6720f21210 479 Pfam PF00232 Glycosyl hydrolase family 1 4 476 9.1E-129 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_16345 5c725019463fce923656cc6720f21210 479 Gene3D G3DSA:3.20.20.80 1 478 4.9E-163 T 15-10-2018 NJ56_16345 5c725019463fce923656cc6720f21210 479 PRINTS PR00131 Glycosyl hydrolase family 1 signature 307 321 1.2E-16 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_16345 5c725019463fce923656cc6720f21210 479 PRINTS PR00131 Glycosyl hydrolase family 1 signature 416 433 1.2E-16 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_16345 5c725019463fce923656cc6720f21210 479 PRINTS PR00131 Glycosyl hydrolase family 1 signature 394 405 1.2E-16 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_16345 5c725019463fce923656cc6720f21210 479 PRINTS PR00131 Glycosyl hydrolase family 1 signature 441 453 1.2E-16 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_16345 5c725019463fce923656cc6720f21210 479 PRINTS PR00131 Glycosyl hydrolase family 1 signature 373 381 1.2E-16 T 15-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 NJ56_16345 5c725019463fce923656cc6720f21210 479 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 373 381 - T 15-10-2018 IPR018120 Glycoside hydrolase family 1, active site NJ56_02095 dff988a5bc3b3df2b1cf15d97602f1b3 128 Gene3D G3DSA:1.20.58.1630 30 127 3.9E-29 T 15-10-2018 IPR038432 PulS/OutS-like superfamily NJ56_02095 dff988a5bc3b3df2b1cf15d97602f1b3 128 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 17 120 3.5E-29 T 15-10-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like NJ56_12555 6875bcb574a8a8f28401dca40cc45372 194 Pfam PF11198 Protein of unknown function (DUF2857) 8 183 1.8E-59 T 15-10-2018 IPR021364 Protein of unknown function DUF2857 NJ56_15900 9c885a1f0dd168e9338105e2c9479885 188 SUPERFAMILY SSF54593 5 185 1.41E-66 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_15900 9c885a1f0dd168e9338105e2c9479885 188 Gene3D G3DSA:3.10.180.10 1 188 4.3E-69 T 15-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NJ56_15900 9c885a1f0dd168e9338105e2c9479885 188 Pfam PF06185 YecM protein 10 185 6.7E-70 T 15-10-2018 IPR010393 Protein of unknown function DUF991 NJ56_14290 7ce7db4d8c0746ed3a8483bae65e1286 219 Gene3D G3DSA:2.60.220.40 92 164 8.6E-25 T 15-10-2018 NJ56_14290 7ce7db4d8c0746ed3a8483bae65e1286 219 Pfam PF04717 Type VI secretion system, phage-baseplate injector 7 120 1.7E-37 T 15-10-2018 IPR006531 Gp5 N-terminal NJ56_14290 7ce7db4d8c0746ed3a8483bae65e1286 219 Gene3D G3DSA:2.40.50.230 3 90 3.6E-28 T 15-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily NJ56_14290 7ce7db4d8c0746ed3a8483bae65e1286 219 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 11 202 1.2E-49 T 15-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 NJ56_11525 7f94fa411992d9b88e1751c31ed039a0 301 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 284 9.1E-149 T 15-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_11525 7f94fa411992d9b88e1751c31ed039a0 301 SUPERFAMILY SSF52096 25 283 3.42E-87 T 15-10-2018 IPR029045 ClpP/crotonase-like domain superfamily NJ56_11525 7f94fa411992d9b88e1751c31ed039a0 301 Pfam PF01039 Carboxyl transferase domain 56 239 4.0E-18 T 15-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 NJ56_11525 7f94fa411992d9b88e1751c31ed039a0 301 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 38.294 T 15-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_11525 7f94fa411992d9b88e1751c31ed039a0 301 Gene3D G3DSA:3.90.226.10 25 287 1.0E-87 T 15-10-2018 NJ56_11525 7f94fa411992d9b88e1751c31ed039a0 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 1.5E-36 T 15-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_11525 7f94fa411992d9b88e1751c31ed039a0 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 1.5E-36 T 15-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_11525 7f94fa411992d9b88e1751c31ed039a0 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 1.5E-36 T 15-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_11525 7f94fa411992d9b88e1751c31ed039a0 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 1.5E-36 T 15-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_11525 7f94fa411992d9b88e1751c31ed039a0 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 1.5E-36 T 15-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 NJ56_12660 020136af1de71e3ab93c94ec296b374d 503 SUPERFAMILY SSF100950 235 501 8.76E-58 T 15-10-2018 IPR037171 NagB/RpiA transferase-like NJ56_12660 020136af1de71e3ab93c94ec296b374d 503 Gene3D G3DSA:3.40.1080.10 2 232 3.3E-93 T 15-10-2018 NJ56_12660 020136af1de71e3ab93c94ec296b374d 503 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 25 503 1.4E-235 T 15-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 NJ56_12660 020136af1de71e3ab93c94ec296b374d 503 PIRSF PIRSF009451 1 503 4.7E-255 T 15-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 NJ56_12660 020136af1de71e3ab93c94ec296b374d 503 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 37 501 4.5E-254 T 15-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 NJ56_12660 020136af1de71e3ab93c94ec296b374d 503 SUPERFAMILY SSF100950 29 231 6.28E-72 T 15-10-2018 IPR037171 NagB/RpiA transferase-like NJ56_12660 020136af1de71e3ab93c94ec296b374d 503 Gene3D G3DSA:3.40.1080.10 234 503 1.1E-120 T 15-10-2018 NJ56_05650 c17b4cc2d1c3a25716c36a1f6d789b69 294 SUPERFAMILY SSF51730 22 293 9.81E-96 T 15-10-2018 IPR029041 FAD-linked oxidoreductase-like NJ56_05650 c17b4cc2d1c3a25716c36a1f6d789b69 294 Gene3D G3DSA:3.20.20.220 1 294 3.9E-117 T 15-10-2018 NJ56_05650 c17b4cc2d1c3a25716c36a1f6d789b69 294 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 1.9E-103 T 15-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 NJ56_05650 c17b4cc2d1c3a25716c36a1f6d789b69 294 Pfam PF02219 Methylenetetrahydrofolate reductase 16 291 5.7E-109 T 15-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 NJ56_11070 b536810595a45e8432b9c2f15debbf94 137 TIGRFAM TIGR00156 TIGR00156: TIGR00156 family protein 3 135 1.3E-44 T 15-10-2018 IPR016052 Bacteriophage 933W, L0136 NJ56_11070 b536810595a45e8432b9c2f15debbf94 137 SUPERFAMILY SSF101756 39 135 6.8E-34 T 15-10-2018 IPR036700 Bacterial OB-fold superfamily NJ56_11070 b536810595a45e8432b9c2f15debbf94 137 Pfam PF04076 Bacterial OB fold (BOF) protein 30 135 7.5E-37 T 15-10-2018 IPR005220 Bacterial OB-fold NJ56_11070 b536810595a45e8432b9c2f15debbf94 137 Gene3D G3DSA:2.40.50.200 27 137 3.0E-41 T 15-10-2018 IPR036700 Bacterial OB-fold superfamily NJ56_08415 1816c40b877c7fcc9d4654f81f422acb 496 SMART SM00858 11 82 2.5E-11 T 15-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 NJ56_08415 1816c40b877c7fcc9d4654f81f422acb 496 Gene3D G3DSA:3.90.1210.30 3 85 9.1E-26 T 15-10-2018 NJ56_08415 1816c40b877c7fcc9d4654f81f422acb 496 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 108 495 1.1E-155 T 15-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 NJ56_08415 1816c40b877c7fcc9d4654f81f422acb 496 Pfam PF08666 SAF domain 11 80 1.2E-12 T 15-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 NJ56_04255 f085d7e7da416f0a36b994b08195202a 97 SMART SM00883 2 95 1.5E-48 T 15-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NJ56_04255 f085d7e7da416f0a36b994b08195202a 97 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 2.1E-29 T 15-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NJ56_04255 f085d7e7da416f0a36b994b08195202a 97 PRINTS PR00297 10kDa chaperonin signature 60 72 2.1E-27 T 15-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NJ56_04255 f085d7e7da416f0a36b994b08195202a 97 PRINTS PR00297 10kDa chaperonin signature 3 18 2.1E-27 T 15-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NJ56_04255 f085d7e7da416f0a36b994b08195202a 97 PRINTS PR00297 10kDa chaperonin signature 25 46 2.1E-27 T 15-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NJ56_04255 f085d7e7da416f0a36b994b08195202a 97 PRINTS PR00297 10kDa chaperonin signature 82 95 2.1E-27 T 15-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NJ56_04255 f085d7e7da416f0a36b994b08195202a 97 Gene3D G3DSA:2.30.33.40 1 97 8.9E-37 T 15-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 NJ56_04255 f085d7e7da416f0a36b994b08195202a 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 23.884 T 15-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NJ56_04255 f085d7e7da416f0a36b994b08195202a 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 15-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 NJ56_04255 f085d7e7da416f0a36b994b08195202a 97 SUPERFAMILY SSF50129 1 96 7.89E-31 T 15-10-2018 IPR011032 GroES-like superfamily NJ56_16615 45d20e00f08d7594a20399848dc84f05 350 Pfam PF01594 AI-2E family transporter 14 327 4.3E-70 T 15-10-2018 IPR002549 Transmembrane protein TqsA-like NJ56_07950 e1696ca398677f84288ecc0b87bd547a 293 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 292 8.4E-102 T 15-10-2018 NJ56_07950 e1696ca398677f84288ecc0b87bd547a 293 Gene3D G3DSA:3.40.50.150 101 293 9.5E-58 T 15-10-2018 NJ56_07950 e1696ca398677f84288ecc0b87bd547a 293 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 292 32.727 T 15-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 NJ56_07950 e1696ca398677f84288ecc0b87bd547a 293 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 286 3.6E-118 T 15-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 NJ56_07950 e1696ca398677f84288ecc0b87bd547a 293 SUPERFAMILY SSF53335 43 289 1.61E-44 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_07950 e1696ca398677f84288ecc0b87bd547a 293 PIRSF PIRSF000401 1 293 7.8E-92 T 15-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 NJ56_14735 30445266a9091ce3f3654c9f5f133499 465 Pfam PF04317 YcjX-like family, DUF463 20 464 4.1E-188 T 15-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein NJ56_14735 30445266a9091ce3f3654c9f5f133499 465 SUPERFAMILY SSF52540 7 184 5.92E-5 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_14735 30445266a9091ce3f3654c9f5f133499 465 PIRSF PIRSF019381 1 465 9.9E-218 T 15-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein NJ56_06940 d6d9183546e709e237fc9b5c8ba92e81 278 SUPERFAMILY SSF144091 94 271 1.01E-43 T 15-10-2018 NJ56_06940 d6d9183546e709e237fc9b5c8ba92e81 278 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 83 1.5E-25 T 15-10-2018 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 NJ56_06940 d6d9183546e709e237fc9b5c8ba92e81 278 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 4 271 3.6E-120 T 15-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 NJ56_06940 d6d9183546e709e237fc9b5c8ba92e81 278 Gene3D G3DSA:1.20.1540.10 92 271 1.5E-60 T 15-10-2018 IPR035952 Rhomboid-like superfamily NJ56_06940 d6d9183546e709e237fc9b5c8ba92e81 278 Pfam PF01694 Rhomboid family 132 271 2.4E-28 T 15-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 NJ56_06940 d6d9183546e709e237fc9b5c8ba92e81 278 Gene3D G3DSA:3.30.70.2350 1 68 4.8E-20 T 15-10-2018 IPR038236 GlpG peptidase, N-terminal domain superfamily NJ56_06940 d6d9183546e709e237fc9b5c8ba92e81 278 Hamap MF_01594 Rhomboid protease GlpG [glpG]. 1 275 47.762 T 15-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 NJ56_07605 3eb90f942ca6889952fa243084e1f823 532 SUPERFAMILY SSF51645 12 531 3.79E-189 T 15-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 NJ56_07605 3eb90f942ca6889952fa243084e1f823 532 PIRSF PIRSF001363 2 532 1.6E-248 T 15-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 NJ56_07605 3eb90f942ca6889952fa243084e1f823 532 Pfam PF01274 Malate synthase 12 531 2.9E-207 T 15-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 NJ56_07605 3eb90f942ca6889952fa243084e1f823 532 Gene3D G3DSA:1.20.1220.12 411 532 3.8E-51 T 15-10-2018 NJ56_07605 3eb90f942ca6889952fa243084e1f823 532 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 23 531 3.7E-253 T 15-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 NJ56_07605 3eb90f942ca6889952fa243084e1f823 532 Gene3D G3DSA:3.20.20.360 2 410 6.1E-192 T 15-10-2018 NJ56_09070 63f72db98ad54c73adf2ec385f1ec9ce 108 Pfam PF04320 Protein with unknown function (DUF469) 7 107 2.6E-42 T 15-10-2018 IPR007416 Protein of unknown function DUF469 NJ56_12510 1ff5a99a4aef359a23d95b221f96464e 404 Pfam PF03743 Bacterial conjugation TrbI-like protein 217 395 1.4E-44 T 15-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI NJ56_12510 1ff5a99a4aef359a23d95b221f96464e 404 Gene3D G3DSA:2.40.128.260 341 404 7.6E-7 T 15-10-2018 NJ56_12510 1ff5a99a4aef359a23d95b221f96464e 404 Gene3D G3DSA:2.40.128.260 211 340 2.0E-36 T 15-10-2018 NJ56_00965 51a1a255fa2283b31940f16183e8e1ae 163 SUPERFAMILY SSF49401 40 162 2.09E-20 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_00965 51a1a255fa2283b31940f16183e8e1ae 163 Pfam PF00419 Fimbrial protein 32 162 3.3E-13 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_00965 51a1a255fa2283b31940f16183e8e1ae 163 Gene3D G3DSA:2.60.40.1090 43 163 1.9E-30 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_02485 e48e7ebf611fae039bc107fa1fd6563d 151 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 32 140 6.3E-51 T 15-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 NJ56_02485 e48e7ebf611fae039bc107fa1fd6563d 151 SUPERFAMILY SSF57716 111 149 5.7E-10 T 15-10-2018 NJ56_02485 e48e7ebf611fae039bc107fa1fd6563d 151 SUPERFAMILY SSF109635 9 110 8.24E-37 T 15-10-2018 IPR037187 DksA, N-terminal domain superfamily NJ56_02485 e48e7ebf611fae039bc107fa1fd6563d 151 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 114 138 - T 15-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site NJ56_02485 e48e7ebf611fae039bc107fa1fd6563d 151 Gene3D G3DSA:1.20.120.910 20 150 1.7E-35 T 15-10-2018 NJ56_02485 e48e7ebf611fae039bc107fa1fd6563d 151 PRINTS PR00618 DksA/TraR zinc finger signature 126 138 9.9E-5 T 15-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria NJ56_02485 e48e7ebf611fae039bc107fa1fd6563d 151 PRINTS PR00618 DksA/TraR zinc finger signature 114 125 9.9E-5 T 15-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria NJ56_02485 e48e7ebf611fae039bc107fa1fd6563d 151 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 28 150 29.578 T 15-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 NJ56_02485 e48e7ebf611fae039bc107fa1fd6563d 151 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 111 143 3.1E-10 T 15-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 NJ56_11700 2278f25bb2c0589c842e7b0462073866 325 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 211 224 - T 15-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11700 2278f25bb2c0589c842e7b0462073866 325 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 15-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11700 2278f25bb2c0589c842e7b0462073866 325 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 323 23.93 T 15-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11700 2278f25bb2c0589c842e7b0462073866 325 Pfam PF00146 NADH dehydrogenase 17 316 2.6E-120 T 15-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_06245 d13be5c51f01e1031f18ba7e22a4e271 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 1.0E-38 T 15-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 NJ56_06245 d13be5c51f01e1031f18ba7e22a4e271 156 SUPERFAMILY SSF81573 63 121 4.58E-15 T 15-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily NJ56_06245 d13be5c51f01e1031f18ba7e22a4e271 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 1.2E-59 T 15-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 NJ56_06245 d13be5c51f01e1031f18ba7e22a4e271 156 Gene3D G3DSA:1.20.5.620 62 122 1.6E-24 T 15-10-2018 NJ56_06245 d13be5c51f01e1031f18ba7e22a4e271 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.285 T 15-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 NJ56_01910 e6d19356bf07a2aefc48bad3280d5b59 251 SUPERFAMILY SSF75217 1 245 6.34E-103 T 15-10-2018 IPR029028 Alpha/beta knot methyltransferases NJ56_01910 e6d19356bf07a2aefc48bad3280d5b59 251 Gene3D G3DSA:3.40.1280.10 1 160 6.1E-68 T 15-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NJ56_01910 e6d19356bf07a2aefc48bad3280d5b59 251 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 2.1E-71 T 15-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 NJ56_01910 e6d19356bf07a2aefc48bad3280d5b59 251 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 233 5.5E-111 T 15-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 NJ56_01910 e6d19356bf07a2aefc48bad3280d5b59 251 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 251 120.147 T 15-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 NJ56_01910 e6d19356bf07a2aefc48bad3280d5b59 251 Gene3D G3DSA:1.10.1270.20 161 250 4.1E-36 T 15-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 NJ56_01910 e6d19356bf07a2aefc48bad3280d5b59 251 PIRSF PIRSF000386 1 250 1.3E-102 T 15-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 NJ56_12785 b0b5e3f65f36aebf31f7595b6908aeb4 295 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 239 3.8E-11 T 15-10-2018 IPR002898 MotA/TolQ/ExbB proton channel NJ56_12785 b0b5e3f65f36aebf31f7595b6908aeb4 295 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 2 281 1.8E-118 T 15-10-2018 IPR022522 Flagellar motor stator, MotA NJ56_12785 b0b5e3f65f36aebf31f7595b6908aeb4 295 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 15-10-2018 IPR000540 Flagellar motor protein MotA, conserved site NJ56_00605 822c465392890449d5fcd830484f9e5e 292 Gene3D G3DSA:3.30.465.10 198 292 8.0E-34 T 15-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 NJ56_00605 822c465392890449d5fcd830484f9e5e 292 SUPERFAMILY SSF54631 66 202 4.42E-32 T 15-10-2018 NJ56_00605 822c465392890449d5fcd830484f9e5e 292 Pfam PF00571 CBS domain 69 123 6.9E-8 T 15-10-2018 IPR000644 CBS domain NJ56_00605 822c465392890449d5fcd830484f9e5e 292 Pfam PF00571 CBS domain 143 189 9.3E-5 T 15-10-2018 IPR000644 CBS domain NJ56_00605 822c465392890449d5fcd830484f9e5e 292 SMART SM01091 205 283 2.8E-28 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_00605 822c465392890449d5fcd830484f9e5e 292 Pfam PF03471 Transporter associated domain 206 281 3.2E-21 T 15-10-2018 IPR005170 Transporter-associated domain NJ56_00605 822c465392890449d5fcd830484f9e5e 292 SMART SM00116 141 189 2.5 T 15-10-2018 IPR000644 CBS domain NJ56_00605 822c465392890449d5fcd830484f9e5e 292 SMART SM00116 78 127 2.9 T 15-10-2018 IPR000644 CBS domain NJ56_00605 822c465392890449d5fcd830484f9e5e 292 SUPERFAMILY SSF56176 203 289 2.48E-23 T 15-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 NJ56_00605 822c465392890449d5fcd830484f9e5e 292 Gene3D G3DSA:3.10.580.10 51 197 5.4E-56 T 15-10-2018 NJ56_06205 ed2a0683dc6e61ab7e2d3daa07cf8ad3 153 SUPERFAMILY SSF46785 5 67 6.83E-20 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_06205 ed2a0683dc6e61ab7e2d3daa07cf8ad3 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 2.3E-14 T 15-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 NJ56_06205 ed2a0683dc6e61ab7e2d3daa07cf8ad3 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 2.3E-14 T 15-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 NJ56_06205 ed2a0683dc6e61ab7e2d3daa07cf8ad3 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 2.3E-14 T 15-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 NJ56_06205 ed2a0683dc6e61ab7e2d3daa07cf8ad3 153 Pfam PF01037 Lrp/AsnC ligand binding domain 77 144 4.3E-17 T 15-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NJ56_06205 ed2a0683dc6e61ab7e2d3daa07cf8ad3 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 54 8.7E-15 T 15-10-2018 NJ56_06205 ed2a0683dc6e61ab7e2d3daa07cf8ad3 153 SUPERFAMILY SSF54909 68 153 2.28E-19 T 15-10-2018 IPR011008 Dimeric alpha-beta barrel NJ56_06205 ed2a0683dc6e61ab7e2d3daa07cf8ad3 153 Gene3D G3DSA:3.30.70.920 59 141 2.9E-35 T 15-10-2018 NJ56_06205 ed2a0683dc6e61ab7e2d3daa07cf8ad3 153 SMART SM00344 7 114 5.9E-43 T 15-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 NJ56_06205 ed2a0683dc6e61ab7e2d3daa07cf8ad3 153 Gene3D G3DSA:1.10.10.10 3 57 1.3E-24 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_06205 ed2a0683dc6e61ab7e2d3daa07cf8ad3 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 15-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site NJ56_11985 c9694c27d46a9ebcb3236fdea1b1d93f 239 Pfam PF05869 DNA N-6-adenine-methyltransferase (Dam) 21 205 4.3E-57 T 15-10-2018 IPR008593 DNA N-6-adenine-methyltransferase GO:0003677|GO:0009007|GO:0032775 NJ56_11985 c9694c27d46a9ebcb3236fdea1b1d93f 239 TIGRFAM TIGR01712 phage_N6A_met: phage N-6-adenine-methyltransferase 20 201 2.0E-57 T 15-10-2018 IPR008593 DNA N-6-adenine-methyltransferase GO:0003677|GO:0009007|GO:0032775 NJ56_09800 692e3d668d64c246c3380777f3c8c488 86 Gene3D G3DSA:2.30.30.400 10 86 7.2E-32 T 15-10-2018 IPR038626 Rof-like superfamily NJ56_09800 692e3d668d64c246c3380777f3c8c488 86 SUPERFAMILY SSF101744 1 84 2.35E-29 T 15-10-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 NJ56_09800 692e3d668d64c246c3380777f3c8c488 86 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 9 83 5.1E-27 T 15-10-2018 IPR009778 Modulator of Rho-dependent transcription termination NJ56_15055 af8ca1e682d08240c5be13c25d7e8357 108 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 2 106 22.543 T 15-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 NJ56_15055 af8ca1e682d08240c5be13c25d7e8357 108 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 1 106 3.4E-42 T 15-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 NJ56_10795 28b098965b94a7e3cc26d6837ebbcf31 62 ProDom PD053432 MEMBRANE TRANSMEMBRANE YFGG INNER EXPORTED Y1396 PRECURSOR SIGNAL 2 49 8.0E-12 T 15-10-2018 IPR022576 Protein of unknown function DUF2633 NJ56_10795 28b098965b94a7e3cc26d6837ebbcf31 62 Pfam PF11119 Protein of unknown function (DUF2633) 1 52 7.6E-25 T 15-10-2018 IPR022576 Protein of unknown function DUF2633 NJ56_14375 db8652617def2926a96ca70726318b3e 480 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 1 466 44.379 T 15-10-2018 IPR003846 Uncharacterised protein family UPF0061 NJ56_14375 db8652617def2926a96ca70726318b3e 480 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 4 450 5.0E-152 T 15-10-2018 IPR003846 Uncharacterised protein family UPF0061 NJ56_04050 ea6b7f243278078c8486b2470510a6ae 208 Pfam PF06551 Protein of unknown function (DUF1120) 33 102 3.5E-8 T 15-10-2018 IPR010546 Protein of unknown function DUF1120 NJ56_07760 a949bfb0c0bb01a90f7670327db775ec 1630 SUPERFAMILY SSF51126 40 316 6.91E-55 T 15-10-2018 IPR011050 Pectin lyase fold/virulence factor NJ56_07760 a949bfb0c0bb01a90f7670327db775ec 1630 Gene3D G3DSA:2.160.20.10 37 324 3.7E-79 T 15-10-2018 IPR012334 Pectin lyase fold NJ56_07760 a949bfb0c0bb01a90f7670327db775ec 1630 Pfam PF13332 Haemagluttinin repeat 817 901 2.4E-5 T 15-10-2018 IPR025157 Hemagglutinin repeat NJ56_07760 a949bfb0c0bb01a90f7670327db775ec 1630 Pfam PF13332 Haemagluttinin repeat 637 794 1.4E-10 T 15-10-2018 IPR025157 Hemagglutinin repeat NJ56_07760 a949bfb0c0bb01a90f7670327db775ec 1630 Pfam PF13332 Haemagluttinin repeat 936 1098 3.3E-12 T 15-10-2018 IPR025157 Hemagglutinin repeat NJ56_07760 a949bfb0c0bb01a90f7670327db775ec 1630 Pfam PF13332 Haemagluttinin repeat 406 545 1.9E-12 T 15-10-2018 IPR025157 Hemagglutinin repeat NJ56_07760 a949bfb0c0bb01a90f7670327db775ec 1630 Pfam PF13332 Haemagluttinin repeat 1221 1389 9.0E-27 T 15-10-2018 IPR025157 Hemagglutinin repeat NJ56_07760 a949bfb0c0bb01a90f7670327db775ec 1630 SMART SM00912 49 169 8.8E-45 T 15-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal NJ56_07760 a949bfb0c0bb01a90f7670327db775ec 1630 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 67 160 1.3E-15 T 15-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal NJ56_07760 a949bfb0c0bb01a90f7670327db775ec 1630 Pfam PF05860 haemagglutination activity domain 44 167 3.2E-29 T 15-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal NJ56_01365 e59d218091585fd831da773e54dfe60c 90 SUPERFAMILY SSF47729 1 90 1.77E-31 T 15-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 NJ56_01365 e59d218091585fd831da773e54dfe60c 90 Gene3D G3DSA:4.10.520.10 1 90 4.8E-36 T 15-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 NJ56_01365 e59d218091585fd831da773e54dfe60c 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.2E-19 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_01365 e59d218091585fd831da773e54dfe60c 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.2E-19 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_01365 e59d218091585fd831da773e54dfe60c 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.2E-19 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_01365 e59d218091585fd831da773e54dfe60c 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 15-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 NJ56_01365 e59d218091585fd831da773e54dfe60c 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 2.7E-32 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_01365 e59d218091585fd831da773e54dfe60c 90 SMART SM00411 1 90 3.7E-43 T 15-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 NJ56_02520 8e91bce6ededbd735290872d3edeac33 435 Gene3D G3DSA:3.20.20.370 179 420 1.3E-58 T 15-10-2018 NJ56_02520 8e91bce6ededbd735290872d3edeac33 435 SUPERFAMILY SSF88713 206 401 1.21E-27 T 15-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NJ56_02520 8e91bce6ededbd735290872d3edeac33 435 Pfam PF01522 Polysaccharide deacetylase 243 380 3.3E-17 T 15-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 NJ56_00320 02ef82e8eac8db9fd5b9d8d685533e8a 522 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 2.7E-173 T 15-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 NJ56_00320 02ef82e8eac8db9fd5b9d8d685533e8a 522 PIRSF PIRSF006446 1 332 2.0E-113 T 15-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 NJ56_00320 02ef82e8eac8db9fd5b9d8d685533e8a 522 PIRSF PIRSF006446 354 521 5.8E-29 T 15-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 NJ56_14000 a58d64ffc71da8330c2ef73cb7742aea 121 ProDom PD077599 YEBF LIPOPROTEIN EXPORTED PERIPLASMIC PRECURSOR SIGNAL SIMILAR PALMITATE MEMBRANE ESCHERICHIA 30 117 1.0E-29 T 15-10-2018 IPR025603 YebF/Colicin-M immunity protein NJ56_14000 a58d64ffc71da8330c2ef73cb7742aea 121 Pfam PF13995 YebF-like protein 30 118 1.8E-38 T 15-10-2018 IPR025603 YebF/Colicin-M immunity protein NJ56_14000 a58d64ffc71da8330c2ef73cb7742aea 121 Gene3D G3DSA:3.10.450.300 24 121 3.5E-37 T 15-10-2018 IPR038703 YebF/Cmi superfamily NJ56_15630 68b8b8fbcd623bb5cc5e3c9b4b0856a3 249 Pfam PF06629 MltA-interacting protein MipA 29 249 2.5E-56 T 15-10-2018 IPR010583 MltA-interacting MipA NJ56_08080 93391158c74ebd7f2b2d9bcc3c1a0906 446 SUPERFAMILY SSF111283 13 446 1.44E-129 T 15-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 NJ56_08080 93391158c74ebd7f2b2d9bcc3c1a0906 446 Pfam PF01523 Putative modulator of DNA gyrase 32 323 1.8E-60 T 15-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 NJ56_08080 93391158c74ebd7f2b2d9bcc3c1a0906 446 Gene3D G3DSA:3.30.2290.10 7 232 1.7E-92 T 15-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal NJ56_14565 e11648fefe9e84537e2cc034da3ac28d 366 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 344 1.1E-94 T 15-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 NJ56_14565 e11648fefe9e84537e2cc034da3ac28d 366 SUPERFAMILY SSF51395 3 364 1.13E-125 T 15-10-2018 NJ56_14565 e11648fefe9e84537e2cc034da3ac28d 366 Gene3D G3DSA:3.20.20.70 3 366 4.7E-143 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_03730 b63af3216b6bb3b57278432f201a78f7 292 Pfam PF01136 Peptidase family U32 92 207 1.3E-11 T 15-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 NJ56_17520 7e53fcd08adb1631cf933c3360adce06 444 Pfam PF13520 Amino acid permease 10 401 1.8E-48 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_17520 7e53fcd08adb1631cf933c3360adce06 444 PIRSF PIRSF006060 1 432 2.3E-64 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_17520 7e53fcd08adb1631cf933c3360adce06 444 Gene3D G3DSA:1.20.1740.10 2 438 2.0E-74 T 15-10-2018 NJ56_09240 6989091fbd2e1b72cf4e6c852c94ddff 198 PIRSF PIRSF006806 7 195 1.3E-41 T 15-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase NJ56_09240 6989091fbd2e1b72cf4e6c852c94ddff 198 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 192 4.1E-57 T 15-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase NJ56_09240 6989091fbd2e1b72cf4e6c852c94ddff 198 Gene3D G3DSA:3.40.50.10420 3 197 1.2E-59 T 15-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily NJ56_09240 6989091fbd2e1b72cf4e6c852c94ddff 198 SUPERFAMILY SSF100950 11 198 2.23E-57 T 15-10-2018 IPR037171 NagB/RpiA transferase-like NJ56_09240 6989091fbd2e1b72cf4e6c852c94ddff 198 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 11 192 1.1E-50 T 15-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase NJ56_03030 8990f4057758a3b4e70c56f2ab73a1c5 258 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 38.499 T 15-10-2018 IPR005583 Peroxide stress protein YaaA NJ56_03030 8990f4057758a3b4e70c56f2ab73a1c5 258 Pfam PF03883 Peroxide stress protein YaaA 1 243 4.3E-92 T 15-10-2018 IPR005583 Peroxide stress protein YaaA NJ56_07810 38c55000b0dfa3353b6d66ad3e775f89 428 Hamap MF_01301 Maltoporin [lamB]. 3 428 43.352 T 15-10-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 NJ56_07810 38c55000b0dfa3353b6d66ad3e775f89 428 Gene3D G3DSA:2.40.170.10 25 428 4.5E-171 T 15-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 NJ56_07810 38c55000b0dfa3353b6d66ad3e775f89 428 SUPERFAMILY SSF56935 25 428 6.71E-148 T 15-10-2018 NJ56_07810 38c55000b0dfa3353b6d66ad3e775f89 428 Pfam PF02264 LamB porin 27 428 5.5E-146 T 15-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 NJ56_07810 38c55000b0dfa3353b6d66ad3e775f89 428 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 31 423 0.0 T 15-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 NJ56_05115 fd712bbbbd67e7125f6ff53b711ab0f4 205 Gene3D G3DSA:3.40.50.150 1 200 4.1E-66 T 15-10-2018 NJ56_05115 fd712bbbbd67e7125f6ff53b711ab0f4 205 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 1 190 2.7E-66 T 15-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 NJ56_05115 fd712bbbbd67e7125f6ff53b711ab0f4 205 PIRSF PIRSF004553 12 192 1.1E-59 T 15-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 NJ56_05115 fd712bbbbd67e7125f6ff53b711ab0f4 205 Pfam PF03602 Conserved hypothetical protein 95 13 188 3.7E-62 T 15-10-2018 NJ56_05115 fd712bbbbd67e7125f6ff53b711ab0f4 205 SUPERFAMILY SSF53335 12 191 1.69E-55 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_05115 fd712bbbbd67e7125f6ff53b711ab0f4 205 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 125 131 - T 15-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NJ56_15000 3d1861841063e15ddb6b4f5429bffe66 185 Pfam PF06821 Serine hydrolase 6 173 7.4E-49 T 15-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 NJ56_15000 3d1861841063e15ddb6b4f5429bffe66 185 Gene3D G3DSA:3.40.50.1820 2 179 7.5E-44 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_15000 3d1861841063e15ddb6b4f5429bffe66 185 SUPERFAMILY SSF53474 4 170 7.05E-27 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_04310 0e4530c1f811ca5f90ca234297912e44 229 Pfam PF07812 TfuA-like protein 54 172 4.1E-32 T 15-10-2018 IPR012924 TfuA-like, core NJ56_16795 8a86b536b2a779c26d4827d17927af12 182 Hamap MF_00906 Cell division protein ZapC [zapC]. 2 177 40.372 T 15-10-2018 IPR009809 Cell division protein ZapC NJ56_16795 8a86b536b2a779c26d4827d17927af12 182 Pfam PF07126 Cell-division protein ZapC 3 169 3.5E-69 T 15-10-2018 IPR009809 Cell division protein ZapC NJ56_16795 8a86b536b2a779c26d4827d17927af12 182 PIRSF PIRSF010252 1 178 9.7E-63 T 15-10-2018 IPR009809 Cell division protein ZapC NJ56_04775 f9eb0ed89f6f1e22518f707649ec1e82 234 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 15-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_04775 f9eb0ed89f6f1e22518f707649ec1e82 234 SUPERFAMILY SSF56808 6 225 1.07E-82 T 15-10-2018 IPR023674 Ribosomal protein L1-like NJ56_04775 f9eb0ed89f6f1e22518f707649ec1e82 234 PIRSF PIRSF002155 1 227 1.1E-78 T 15-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 NJ56_04775 f9eb0ed89f6f1e22518f707649ec1e82 234 Gene3D G3DSA:3.40.50.790 68 159 3.7E-80 T 15-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich NJ56_04775 f9eb0ed89f6f1e22518f707649ec1e82 234 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.248 T 15-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 NJ56_04775 f9eb0ed89f6f1e22518f707649ec1e82 234 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 1.7E-51 T 15-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein NJ56_04775 f9eb0ed89f6f1e22518f707649ec1e82 234 Gene3D G3DSA:3.30.190.20 25 222 3.7E-80 T 15-10-2018 NJ56_04775 f9eb0ed89f6f1e22518f707649ec1e82 234 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 7.9E-107 T 15-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 NJ56_11860 a3e62d51189bc33e17c1efe53e9c2654 384 Pfam PF07690 Major Facilitator Superfamily 22 322 2.0E-12 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_11860 a3e62d51189bc33e17c1efe53e9c2654 384 Gene3D G3DSA:1.20.1250.20 202 382 4.3E-19 T 15-10-2018 NJ56_11860 a3e62d51189bc33e17c1efe53e9c2654 384 Gene3D G3DSA:1.20.1250.20 15 189 1.7E-11 T 15-10-2018 NJ56_11860 a3e62d51189bc33e17c1efe53e9c2654 384 SUPERFAMILY SSF103473 20 377 1.44E-31 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_03970 0d6db53ca60e5faf0933c79324cfaa1a 221 TIGRFAM TIGR03652 FeS_repair_RIC: iron-sulfur cluster repair di-iron protein 8 217 1.0E-76 T 15-10-2018 IPR019903 Repair of iron centres family NJ56_03970 0d6db53ca60e5faf0933c79324cfaa1a 221 Gene3D G3DSA:1.20.120.520 67 220 5.0E-29 T 15-10-2018 NJ56_03970 0d6db53ca60e5faf0933c79324cfaa1a 221 Pfam PF04405 Domain of Unknown function (DUF542) 5 58 3.5E-19 T 15-10-2018 IPR019903 Repair of iron centres family NJ56_03970 0d6db53ca60e5faf0933c79324cfaa1a 221 Pfam PF01814 Hemerythrin HHE cation binding domain 80 217 3.4E-23 T 15-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 NJ56_09530 4dedfc8e2ba25dd3ea050e9aabe51913 207 PIRSF PIRSF004525 16 207 4.1E-60 T 15-10-2018 IPR016419 Prepilin peptidase-dependent protein B, predicted NJ56_06755 65778ac5190d82175fff575627925783 496 SUPERFAMILY SSF63411 29 240 1.92E-26 T 15-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NJ56_06755 65778ac5190d82175fff575627925783 496 Gene3D G3DSA:3.30.830.10 257 472 4.8E-101 T 15-10-2018 NJ56_06755 65778ac5190d82175fff575627925783 496 Pfam PF00675 Insulinase (Peptidase family M16) 51 159 4.9E-11 T 15-10-2018 IPR011765 Peptidase M16, N-terminal NJ56_06755 65778ac5190d82175fff575627925783 496 Pfam PF05193 Peptidase M16 inactive domain 201 378 8.5E-15 T 15-10-2018 IPR007863 Peptidase M16, C-terminal NJ56_06755 65778ac5190d82175fff575627925783 496 Gene3D G3DSA:3.30.830.10 8 256 1.3E-50 T 15-10-2018 NJ56_06755 65778ac5190d82175fff575627925783 496 SUPERFAMILY SSF63411 342 460 4.02E-6 T 15-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NJ56_02115 5ce362512e40b1aef824b4dc5d50efd2 144 SUPERFAMILY SSF69635 8 122 1.45E-10 T 15-10-2018 NJ56_02115 5ce362512e40b1aef824b4dc5d50efd2 144 Gene3D G3DSA:3.30.1460.10 5 138 4.4E-14 T 15-10-2018 NJ56_02115 5ce362512e40b1aef824b4dc5d50efd2 144 Pfam PF05932 Tir chaperone protein (CesT) family 12 122 3.5E-10 T 15-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 NJ56_10880 a7bce094e7827d4e28fcc90e43224062 156 Gene3D G3DSA:3.40.30.10 4 156 5.9E-47 T 15-10-2018 NJ56_10880 a7bce094e7827d4e28fcc90e43224062 156 PIRSF PIRSF000239 1 152 1.3E-16 T 15-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 NJ56_10880 a7bce094e7827d4e28fcc90e43224062 156 Pfam PF00578 AhpC/TSA family 7 134 7.5E-38 T 15-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 NJ56_10880 a7bce094e7827d4e28fcc90e43224062 156 SUPERFAMILY SSF52833 1 154 3.25E-48 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_09650 a8ce4d822a95c438965b1a666c328a83 109 PIRSF PIRSF006257 1 108 8.4E-40 T 15-10-2018 IPR007384 Protein of unknown function UCP006257 NJ56_09650 a8ce4d822a95c438965b1a666c328a83 109 Gene3D G3DSA:1.20.1440.40 1 105 8.8E-35 T 15-10-2018 IPR036814 YqcC-like superfamily NJ56_09650 a8ce4d822a95c438965b1a666c328a83 109 Pfam PF04287 tRNA pseudouridine synthase C 6 103 6.8E-35 T 15-10-2018 IPR023376 YqcC-like domain NJ56_09650 a8ce4d822a95c438965b1a666c328a83 109 SUPERFAMILY SSF158452 1 105 2.35E-37 T 15-10-2018 IPR036814 YqcC-like superfamily NJ56_08315 470dd4980ba41673f80d014c37cca2d6 192 SMART SM00749 52 115 1.9E-11 T 15-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria NJ56_08315 470dd4980ba41673f80d014c37cca2d6 192 SMART SM00749 130 192 8.7E-4 T 15-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria NJ56_08315 470dd4980ba41673f80d014c37cca2d6 192 Pfam PF04972 BON domain 125 191 6.3E-17 T 15-10-2018 IPR007055 BON domain NJ56_08315 470dd4980ba41673f80d014c37cca2d6 192 Pfam PF04972 BON domain 47 114 3.4E-14 T 15-10-2018 IPR007055 BON domain NJ56_12370 089a30ca279aa9b57015031afca529cb 378 Gene3D G3DSA:3.40.50.1980 32 376 9.0E-108 T 15-10-2018 NJ56_12370 089a30ca279aa9b57015031afca529cb 378 Pfam PF01497 Periplasmic binding protein 87 321 7.7E-25 T 15-10-2018 IPR002491 ABC transporter periplasmic binding domain NJ56_12370 089a30ca279aa9b57015031afca529cb 378 SUPERFAMILY SSF53807 34 369 5.23E-55 T 15-10-2018 NJ56_04445 b049b92cb0d0599a8b3c59f0247ba820 473 TIGRFAM TIGR03755 conj_TIGR03755: integrating conjugative element protein, PFL_4711 family 49 462 1.9E-155 T 15-10-2018 IPR021204 Integrating conjugative element protein, PFL4711 NJ56_11905 1d4ccd65818dea2cb7156a4b97a389bf 67 SUPERFAMILY SSF141099 1 61 3.27E-9 T 15-10-2018 IPR036488 Atu1913-like superfamily NJ56_11905 1d4ccd65818dea2cb7156a4b97a389bf 67 Pfam PF08980 Domain of unknown function (DUF1883) 1 62 5.5E-9 T 15-10-2018 IPR015073 Domain of unknown function DUF1883 NJ56_11905 1d4ccd65818dea2cb7156a4b97a389bf 67 Gene3D G3DSA:4.10.1210.10 1 64 2.7E-6 T 15-10-2018 IPR036488 Atu1913-like superfamily NJ56_04575 f95f521ac47fd9c7ed228a1366b4efe7 158 Pfam PF12101 Protein of unknown function (DUF3577) 12 139 9.0E-57 T 15-10-2018 IPR021960 Protein of unknown function DUF3577 NJ56_13795 f9cb137a5cb96be63d10907464ca6cbe 572 Pfam PF00664 ABC transporter transmembrane region 18 287 1.1E-52 T 15-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 NJ56_13795 f9cb137a5cb96be63d10907464ca6cbe 572 Pfam PF00005 ABC transporter 350 498 5.8E-35 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_13795 f9cb137a5cb96be63d10907464ca6cbe 572 Gene3D G3DSA:3.40.50.300 329 571 6.5E-93 T 15-10-2018 NJ56_13795 f9cb137a5cb96be63d10907464ca6cbe 572 SUPERFAMILY SSF52540 322 569 2.83E-92 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_13795 f9cb137a5cb96be63d10907464ca6cbe 572 Gene3D G3DSA:1.20.1560.10 1 320 1.5E-76 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_13795 f9cb137a5cb96be63d10907464ca6cbe 572 SMART SM00382 358 544 3.1E-16 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_13795 f9cb137a5cb96be63d10907464ca6cbe 572 SUPERFAMILY SSF90123 3 319 2.09E-75 T 15-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 NJ56_13795 f9cb137a5cb96be63d10907464ca6cbe 572 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_09150 66b5fc13c615c648a23abcae60ebdc7c 235 Pfam PF04231 Endonuclease I 46 230 5.3E-43 T 15-10-2018 IPR007346 Endonuclease I GO:0004518 NJ56_09150 66b5fc13c615c648a23abcae60ebdc7c 235 SUPERFAMILY SSF54060 25 230 2.24E-88 T 15-10-2018 NJ56_00670 9fd532d9832d6dd492e5056831baf7fd 156 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 156 7.5E-82 T 15-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 NJ56_00670 9fd532d9832d6dd492e5056831baf7fd 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 26.249 T 15-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 NJ56_00670 9fd532d9832d6dd492e5056831baf7fd 156 Gene3D G3DSA:3.40.1280.10 1 156 2.2E-51 T 15-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NJ56_00670 9fd532d9832d6dd492e5056831baf7fd 156 SUPERFAMILY SSF75217 2 154 1.36E-48 T 15-10-2018 IPR029028 Alpha/beta knot methyltransferases NJ56_00670 9fd532d9832d6dd492e5056831baf7fd 156 Pfam PF02590 Predicted SPOUT methyltransferase 2 154 1.6E-46 T 15-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 NJ56_00670 9fd532d9832d6dd492e5056831baf7fd 156 PIRSF PIRSF004505 1 155 3.8E-40 T 15-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 NJ56_00850 93db56443a2b68c16dd457f921626cd0 199 SUPERFAMILY SSF48452 48 171 1.07E-11 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_00850 93db56443a2b68c16dd457f921626cd0 199 Gene3D G3DSA:1.25.40.10 15 199 3.2E-12 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_14135 5aa02b18c497a4aad4146af3920b35dd 294 Pfam PF01435 Peptidase family M48 74 289 2.2E-38 T 15-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 NJ56_14135 5aa02b18c497a4aad4146af3920b35dd 294 Hamap MF_00188 Protease HtpX [htpX]. 1 290 26.306 T 15-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 NJ56_14135 5aa02b18c497a4aad4146af3920b35dd 294 Gene3D G3DSA:3.30.2010.10 64 157 2.7E-37 T 15-10-2018 NJ56_02770 4ad19b0a3553db23101a11f6b2c0b0fd 402 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 244 331 8.7E-12 T 15-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal NJ56_02770 4ad19b0a3553db23101a11f6b2c0b0fd 402 Pfam PF12323 Helix-turn-helix domain 1 48 7.2E-15 T 15-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain NJ56_02770 4ad19b0a3553db23101a11f6b2c0b0fd 402 Pfam PF07282 Putative transposase DNA-binding domain 304 371 4.5E-24 T 15-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal NJ56_02770 4ad19b0a3553db23101a11f6b2c0b0fd 402 Pfam PF01385 Probable transposase 162 275 1.7E-29 T 15-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 NJ56_06115 7693c184a7fe7ff9e66bf504199de950 197 Gene3D G3DSA:3.90.550.10 2 197 5.7E-54 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_06115 7693c184a7fe7ff9e66bf504199de950 197 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 5 186 1.1E-67 T 15-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 NJ56_06115 7693c184a7fe7ff9e66bf504199de950 197 SUPERFAMILY SSF53448 1 189 5.01E-30 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_06115 7693c184a7fe7ff9e66bf504199de950 197 Pfam PF12804 MobA-like NTP transferase domain 7 157 6.6E-31 T 15-10-2018 IPR025877 MobA-like NTP transferase NJ56_06115 7693c184a7fe7ff9e66bf504199de950 197 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 3 188 28.672 T 15-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 NJ56_08730 1b31241a7d383fe94c9af6d1ea343824 141 Pfam PF06853 Protein of unknown function (DUF1249) 22 135 2.7E-41 T 15-10-2018 IPR009659 Protein of unknown function DUF1249 NJ56_04555 bec5675aed3331f404cd4adc7bbd83fb 198 SUPERFAMILY SSF53955 33 177 4.95E-15 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_04555 bec5675aed3331f404cd4adc7bbd83fb 198 Pfam PF01464 Transglycosylase SLT domain 38 156 5.8E-6 T 15-10-2018 IPR008258 Transglycosylase SLT domain 1 NJ56_14715 8ed5d131f83694544ab6dd1e091c91e2 221 Pfam PF04012 PspA/IM30 family 2 216 7.0E-45 T 15-10-2018 IPR007157 PspA/IM30 NJ56_14715 8ed5d131f83694544ab6dd1e091c91e2 221 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 218 6.9E-94 T 15-10-2018 IPR014319 Phage shock protein, PspA NJ56_00665 86926d53878b4d3cfbe6fb339cc7d318 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 3.8E-37 T 15-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS NJ56_00665 86926d53878b4d3cfbe6fb339cc7d318 105 SUPERFAMILY SSF81301 4 105 4.09E-37 T 15-10-2018 NJ56_00665 86926d53878b4d3cfbe6fb339cc7d318 105 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 4.6E-28 T 15-10-2018 NJ56_00665 86926d53878b4d3cfbe6fb339cc7d318 105 Gene3D G3DSA:3.30.460.10 2 105 6.3E-36 T 15-10-2018 NJ56_00665 86926d53878b4d3cfbe6fb339cc7d318 105 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.574 T 15-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS NJ56_11360 f08e682cec289c5a247b6d499d46cec5 183 Pfam PF08534 Redoxin 42 164 4.4E-22 T 15-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 NJ56_11360 f08e682cec289c5a247b6d499d46cec5 183 SUPERFAMILY SSF52833 46 179 2.53E-38 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_11360 f08e682cec289c5a247b6d499d46cec5 183 Gene3D G3DSA:3.40.30.10 36 182 1.1E-43 T 15-10-2018 NJ56_11360 f08e682cec289c5a247b6d499d46cec5 183 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 178 5.6E-76 T 15-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 NJ56_11360 f08e682cec289c5a247b6d499d46cec5 183 ProSitePatterns PS00194 Thioredoxin family active site. 72 90 - T 15-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 NJ56_11435 56ba4982d0742476e814942a371bc32a 185 Pfam PF04315 Elongation factor P hydroxylase 16 178 1.3E-78 T 15-10-2018 IPR007411 Elongation factor P hydroxylase NJ56_10090 26be0abeba03484c07b2b3cec60ba77e 2863 Pfam PF03538 Salmonella virulence plasmid 28.1kDa A protein 20 314 2.6E-27 T 15-10-2018 IPR018003 Insecticidal toxin complex/plasmid virulence protein NJ56_15065 cddddde1485bf2d45922aa996c548b0b 81 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 1 76 4.0E-22 T 15-10-2018 IPR010595 Protein of unknown function DUF1161 NJ56_15065 cddddde1485bf2d45922aa996c548b0b 81 Pfam PF06649 Protein of unknown function (DUF1161) 23 76 2.5E-26 T 15-10-2018 IPR010595 Protein of unknown function DUF1161 NJ56_17395 632a2fd654a9e7b13b4289a2ce613244 383 SUPERFAMILY SSF103473 6 371 1.83E-19 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_17395 632a2fd654a9e7b13b4289a2ce613244 383 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 13 370 9.4E-86 T 15-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB NJ56_17395 632a2fd654a9e7b13b4289a2ce613244 383 Gene3D G3DSA:1.20.1250.20 1 381 3.1E-12 T 15-10-2018 NJ56_11805 fc99109f9290caef26e315bc90c806be 397 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 397 7.8E-124 T 15-10-2018 IPR008135 Competence-induced protein CinA NJ56_11805 fc99109f9290caef26e315bc90c806be 397 SMART SM00852 5 172 3.9E-36 T 15-10-2018 IPR001453 MoaB/Mog domain NJ56_11805 fc99109f9290caef26e315bc90c806be 397 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 164 2.0E-32 T 15-10-2018 IPR001453 MoaB/Mog domain NJ56_11805 fc99109f9290caef26e315bc90c806be 397 Pfam PF00994 Probable molybdopterin binding domain 6 170 2.3E-33 T 15-10-2018 IPR001453 MoaB/Mog domain NJ56_11805 fc99109f9290caef26e315bc90c806be 397 PIRSF PIRSF006728 1 385 4.4E-109 T 15-10-2018 IPR008135 Competence-induced protein CinA NJ56_11805 fc99109f9290caef26e315bc90c806be 397 Gene3D G3DSA:3.40.980.10 1 172 1.5E-49 T 15-10-2018 IPR036425 MoaB/Mog-like domain superfamily NJ56_11805 fc99109f9290caef26e315bc90c806be 397 SUPERFAMILY SSF53218 2 201 6.54E-37 T 15-10-2018 IPR036425 MoaB/Mog-like domain superfamily NJ56_11805 fc99109f9290caef26e315bc90c806be 397 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 397 112.794 T 15-10-2018 IPR008135 Competence-induced protein CinA NJ56_11805 fc99109f9290caef26e315bc90c806be 397 SUPERFAMILY SSF142433 248 379 6.41E-6 T 15-10-2018 IPR036653 CinA-like, C-terminal NJ56_06810 89262d729334e853df693ddcc531c6db 680 Gene3D G3DSA:1.10.1370.40 13 675 5.0E-266 T 15-10-2018 NJ56_06810 89262d729334e853df693ddcc531c6db 680 SUPERFAMILY SSF55486 1 677 1.57E-212 T 15-10-2018 NJ56_06810 89262d729334e853df693ddcc531c6db 680 Gene3D G3DSA:1.10.1370.10 140 610 5.0E-266 T 15-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 NJ56_06810 89262d729334e853df693ddcc531c6db 680 Pfam PF01432 Peptidase family M3 222 677 3.2E-169 T 15-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 NJ56_16340 3a808a497c2250ad9536405d9b85e445 723 Gene3D G3DSA:1.10.1370.40 75 712 2.8E-243 T 15-10-2018 NJ56_16340 3a808a497c2250ad9536405d9b85e445 723 SUPERFAMILY SSF55486 52 713 6.77E-169 T 15-10-2018 NJ56_16340 3a808a497c2250ad9536405d9b85e445 723 Pfam PF01432 Peptidase family M3 270 715 3.7E-132 T 15-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 NJ56_16340 3a808a497c2250ad9536405d9b85e445 723 Gene3D G3DSA:1.10.1370.10 185 650 2.8E-243 T 15-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 NJ56_00385 26e7dbd6533de0dfd470b89a39316d1b 339 Pfam PF06166 Protein of unknown function (DUF979) 6 338 3.1E-127 T 15-10-2018 IPR009323 Protein of unknown function DUF979 NJ56_13905 ea1f9602754a443a814d016675f8f345 250 Pfam PF00975 Thioesterase domain 9 227 1.5E-23 T 15-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 NJ56_13905 ea1f9602754a443a814d016675f8f345 250 Gene3D G3DSA:3.40.50.1820 3 239 1.7E-32 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_13905 ea1f9602754a443a814d016675f8f345 250 SUPERFAMILY SSF53474 4 232 3.94E-21 T 15-10-2018 IPR029058 Alpha/Beta hydrolase fold NJ56_18115 c75cb1b4ab0a502258375a981baa0d22 93 Pfam PF01381 Helix-turn-helix 38 88 2.4E-11 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_18115 c75cb1b4ab0a502258375a981baa0d22 93 SUPERFAMILY SSF47413 26 87 9.65E-15 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_18115 c75cb1b4ab0a502258375a981baa0d22 93 SMART SM00530 36 91 7.1E-8 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_18115 c75cb1b4ab0a502258375a981baa0d22 93 Gene3D G3DSA:1.10.260.40 7 92 1.9E-14 T 15-10-2018 NJ56_12090 8f3119392f5689d67114fc1848236114 130 Gene3D G3DSA:2.40.10.270 17 121 7.7E-8 T 15-10-2018 IPR038666 Bacteriophage SPP1, head-tail adaptor superfamily NJ56_12090 8f3119392f5689d67114fc1848236114 130 TIGRFAM TIGR01563 gp16_SPP1: putative phage head-tail adaptor 21 119 6.2E-9 T 15-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor NJ56_12090 8f3119392f5689d67114fc1848236114 130 Pfam PF05521 Phage head-tail joining protein 22 117 3.5E-11 T 15-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor NJ56_08025 7a2cd53b813259c49ba2772ca6d1aa22 1285 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 2 1282 0.0 T 15-10-2018 IPR011836 Conserved hypothetical protein CHP02099 NJ56_08025 7a2cd53b813259c49ba2772ca6d1aa22 1285 Pfam PF13116 Protein of unknown function 504 782 1.1E-92 T 15-10-2018 IPR025263 Domain of unknown function DUF3971 NJ56_08025 7a2cd53b813259c49ba2772ca6d1aa22 1285 Pfam PF13502 AsmA-like C-terminal region 1028 1270 6.0E-56 T 15-10-2018 IPR032712 AsmA-like, C-terminal NJ56_11095 d00e48a311ef0faa71c44264ee87434f 291 SUPERFAMILY SSF53067 5 287 7.41E-53 T 15-10-2018 NJ56_11095 d00e48a311ef0faa71c44264ee87434f 291 Gene3D G3DSA:3.30.420.40 6 283 3.3E-79 T 15-10-2018 NJ56_11095 d00e48a311ef0faa71c44264ee87434f 291 Pfam PF00480 ROK family 5 286 2.2E-72 T 15-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 NJ56_11095 d00e48a311ef0faa71c44264ee87434f 291 ProSitePatterns PS01125 ROK family signature. 129 156 - T 15-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 NJ56_11095 d00e48a311ef0faa71c44264ee87434f 291 Gene3D G3DSA:3.30.420.40 119 270 3.3E-79 T 15-10-2018 NJ56_03400 8ffaf608dd461d34ec706aa564e03346 316 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 39 304 4.8E-31 T 15-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 SUPERFAMILY SSF53850 36 402 3.46E-92 T 15-10-2018 NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 PRINTS PR00181 Maltose binding protein signature 137 156 4.7E-91 T 15-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 PRINTS PR00181 Maltose binding protein signature 43 61 4.7E-91 T 15-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 PRINTS PR00181 Maltose binding protein signature 240 259 4.7E-91 T 15-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 PRINTS PR00181 Maltose binding protein signature 306 327 4.7E-91 T 15-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 PRINTS PR00181 Maltose binding protein signature 77 95 4.7E-91 T 15-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 PRINTS PR00181 Maltose binding protein signature 178 197 4.7E-91 T 15-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 PRINTS PR00181 Maltose binding protein signature 364 383 4.7E-91 T 15-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 PRINTS PR00181 Maltose binding protein signature 158 177 4.7E-91 T 15-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 140 157 - T 15-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 Pfam PF13416 Bacterial extracellular solute-binding protein 57 351 1.7E-39 T 15-10-2018 IPR006059 Bacterial extracellular solute-binding protein NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 Gene3D G3DSA:3.40.190.10 145 395 4.7E-146 T 15-10-2018 NJ56_07795 e3f62914fbe0fc267970f25eb5396b85 403 Gene3D G3DSA:3.40.190.10 55 364 4.7E-146 T 15-10-2018 NJ56_16730 b238bcf128bbf8a51cdd7bd4a36ba43a 209 PIRSF PIRSF028788 1 203 5.2E-60 T 15-10-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type NJ56_16730 b238bcf128bbf8a51cdd7bd4a36ba43a 209 Pfam PF04994 TfoX C-terminal domain 117 196 1.4E-23 T 15-10-2018 IPR007077 TfoX, C-terminal NJ56_16730 b238bcf128bbf8a51cdd7bd4a36ba43a 209 Pfam PF04993 TfoX N-terminal domain 16 105 4.2E-25 T 15-10-2018 IPR007076 TfoX, N-terminal NJ56_16730 b238bcf128bbf8a51cdd7bd4a36ba43a 209 Gene3D G3DSA:3.30.1460.30 5 107 4.4E-26 T 15-10-2018 NJ56_16730 b238bcf128bbf8a51cdd7bd4a36ba43a 209 SUPERFAMILY SSF159894 16 106 6.28E-28 T 15-10-2018 NJ56_16730 b238bcf128bbf8a51cdd7bd4a36ba43a 209 Gene3D G3DSA:1.10.150.20 116 204 5.0E-20 T 15-10-2018 NJ56_02930 4ba7945e3ed35df231182c2dafcc1410 204 Pfam PF01810 LysE type translocator 15 203 1.9E-38 T 15-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 NJ56_02930 4ba7945e3ed35df231182c2dafcc1410 204 PIRSF PIRSF006324 1 204 2.8E-57 T 15-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 NJ56_14350 90d18e646e3ecf00cf4f4d8f3b51b3e0 555 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 12 240 2.9E-42 T 15-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 NJ56_14350 90d18e646e3ecf00cf4f4d8f3b51b3e0 555 Hamap MF_01165 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase [arnT]. 4 554 43.537 T 15-10-2018 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase GO:0016763 NJ56_15110 9f55307a5cece8f282234ec791ea8e7a 330 PIRSF PIRSF026166 1 330 1.2E-134 T 15-10-2018 IPR016833 Putative sodium bile acid cotransporter NJ56_15110 9f55307a5cece8f282234ec791ea8e7a 330 Gene3D G3DSA:1.20.1530.20 7 327 3.5E-33 T 15-10-2018 IPR038770 Sodium/solute symporter superfamily NJ56_15110 9f55307a5cece8f282234ec791ea8e7a 330 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 10 319 1.4E-103 T 15-10-2018 IPR016833 Putative sodium bile acid cotransporter NJ56_03460 30df07d8c8c9e106af0ccdab08e36f7d 96 SUPERFAMILY SSF143011 1 84 2.35E-22 T 15-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily NJ56_03460 30df07d8c8c9e106af0ccdab08e36f7d 96 Gene3D G3DSA:3.30.2310.20 1 96 1.0E-28 T 15-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily NJ56_03460 30df07d8c8c9e106af0ccdab08e36f7d 96 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 6 84 9.9E-13 T 15-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NJ56_03460 30df07d8c8c9e106af0ccdab08e36f7d 96 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 5 83 3.1E-10 T 15-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NJ56_06715 86891af3270efb18c669b16a9e4a46a9 63 Pfam PF10945 Cellulose biosynthesis protein BcsR 17 57 5.0E-22 T 15-10-2018 IPR024487 Protein YhjR NJ56_06715 86891af3270efb18c669b16a9e4a46a9 63 ProDom PD053230 YHJR ECS4415 STY4179 CYTOPLASMIC 17 58 9.0E-8 T 15-10-2018 IPR024487 Protein YhjR NJ56_18035 b8a5cd742fd131651772401e3995aa7f 112 Gene3D G3DSA:2.40.50.140 1 111 9.7E-11 T 15-10-2018 NJ56_18035 b8a5cd742fd131651772401e3995aa7f 112 SUPERFAMILY SSF50249 4 109 1.82E-9 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_15915 4fa9d2997ef555c0ef8a43d18d8b97bf 1480 Gene3D G3DSA:2.160.20.10 48 291 2.0E-53 T 15-10-2018 IPR012334 Pectin lyase fold NJ56_15915 4fa9d2997ef555c0ef8a43d18d8b97bf 1480 SMART SM00912 65 181 1.9E-25 T 15-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal NJ56_15915 4fa9d2997ef555c0ef8a43d18d8b97bf 1480 SUPERFAMILY SSF51126 57 328 1.13E-32 T 15-10-2018 IPR011050 Pectin lyase fold/virulence factor NJ56_15915 4fa9d2997ef555c0ef8a43d18d8b97bf 1480 Pfam PF05860 haemagglutination activity domain 54 162 1.3E-19 T 15-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal NJ56_15915 4fa9d2997ef555c0ef8a43d18d8b97bf 1480 Pfam PF13332 Haemagluttinin repeat 1221 1382 3.3E-14 T 15-10-2018 IPR025157 Hemagglutinin repeat NJ56_15915 4fa9d2997ef555c0ef8a43d18d8b97bf 1480 Pfam PF13332 Haemagluttinin repeat 634 758 2.4E-8 T 15-10-2018 IPR025157 Hemagglutinin repeat NJ56_15915 4fa9d2997ef555c0ef8a43d18d8b97bf 1480 Pfam PF13332 Haemagluttinin repeat 397 455 0.0027 T 15-10-2018 IPR025157 Hemagglutinin repeat NJ56_15915 4fa9d2997ef555c0ef8a43d18d8b97bf 1480 Pfam PF13332 Haemagluttinin repeat 498 618 0.01 T 15-10-2018 IPR025157 Hemagglutinin repeat NJ56_15915 4fa9d2997ef555c0ef8a43d18d8b97bf 1480 Pfam PF13332 Haemagluttinin repeat 337 387 0.0065 T 15-10-2018 IPR025157 Hemagglutinin repeat NJ56_15915 4fa9d2997ef555c0ef8a43d18d8b97bf 1480 Pfam PF13332 Haemagluttinin repeat 1036 1189 6.0E-8 T 15-10-2018 IPR025157 Hemagglutinin repeat NJ56_15915 4fa9d2997ef555c0ef8a43d18d8b97bf 1480 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 83 161 4.4E-12 T 15-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal NJ56_03255 807b649a41be0b13362ca8a24637bd65 78 Pfam PF06305 Lipopolysaccharide assembly protein A domain 40 77 5.0E-7 T 15-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 NJ56_10270 3ab4bb65996ee2b5de689592ada35378 113 Gene3D G3DSA:3.30.1450.10 34 113 9.6E-31 T 15-10-2018 IPR037873 BamE-like NJ56_10270 3ab4bb65996ee2b5de689592ada35378 113 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 4 112 32.455 T 15-10-2018 IPR026592 Outer membrane protein assembly factor BamE NJ56_10270 3ab4bb65996ee2b5de689592ada35378 113 Pfam PF04355 SmpA / OmlA family 35 104 7.8E-27 T 15-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 NJ56_11160 3110f19bf96b32cfe652662f8c783fec 255 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 16 232 9.7E-42 T 15-10-2018 NJ56_11160 3110f19bf96b32cfe652662f8c783fec 255 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 10 250 29.454 T 15-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 NJ56_03325 46b63256852e6dcade357c1333333b49 296 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 36 295 2.4E-80 T 15-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 NJ56_03355 768d88b62dccdd1f57fe56662b3042ca 520 Pfam PF00884 Sulfatase 47 399 3.7E-54 T 15-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 NJ56_03355 768d88b62dccdd1f57fe56662b3042ca 520 SUPERFAMILY SSF53649 45 492 3.27E-96 T 15-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 NJ56_03355 768d88b62dccdd1f57fe56662b3042ca 520 Gene3D G3DSA:3.30.1120.10 427 513 6.3E-23 T 15-10-2018 NJ56_03355 768d88b62dccdd1f57fe56662b3042ca 520 Gene3D G3DSA:3.40.720.10 47 419 3.9E-101 T 15-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 NJ56_17550 56e57bc77c0c512c41ff205540244876 156 Pfam PF07308 Protein of unknown function (DUF1456) 86 153 1.8E-26 T 15-10-2018 IPR009921 Domain of unknown function DUF1456 NJ56_17550 56e57bc77c0c512c41ff205540244876 156 Pfam PF07308 Protein of unknown function (DUF1456) 3 70 2.5E-27 T 15-10-2018 IPR009921 Domain of unknown function DUF1456 NJ56_01735 f9e299cd4e44568b714ddb84bd8055bf 198 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 198 29.482 T 15-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 NJ56_01735 f9e299cd4e44568b714ddb84bd8055bf 198 PIRSF PIRSF006102 1 198 3.2E-64 T 15-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 NJ56_01735 f9e299cd4e44568b714ddb84bd8055bf 198 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 196 6.3E-104 T 15-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 NJ56_01735 f9e299cd4e44568b714ddb84bd8055bf 198 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 196 2.2E-58 T 15-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 NJ56_10925 ad0bfb1a19bbc5844d5e592adf9b9158 224 Gene3D G3DSA:3.30.1380.10 4 193 6.3E-34 T 15-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 NJ56_10925 ad0bfb1a19bbc5844d5e592adf9b9158 224 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 21 177 8.8E-38 T 15-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 NJ56_10925 ad0bfb1a19bbc5844d5e592adf9b9158 224 SUPERFAMILY SSF55166 16 178 2.79E-20 T 15-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 NJ56_06240 fb7786ab362cf67342a12597eb194d21 79 PRINTS PR00124 ATP synthase C subunit signature 50 75 2.1E-8 T 15-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06240 fb7786ab362cf67342a12597eb194d21 79 PRINTS PR00124 ATP synthase C subunit signature 33 48 2.1E-8 T 15-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06240 fb7786ab362cf67342a12597eb194d21 79 PRINTS PR00124 ATP synthase C subunit signature 12 31 2.1E-8 T 15-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06240 fb7786ab362cf67342a12597eb194d21 79 Pfam PF00137 ATP synthase subunit C 11 69 9.9E-10 T 15-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 NJ56_06240 fb7786ab362cf67342a12597eb194d21 79 SUPERFAMILY SSF81333 3 77 2.75E-18 T 15-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily NJ56_06240 fb7786ab362cf67342a12597eb194d21 79 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 15-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06240 fb7786ab362cf67342a12597eb194d21 79 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 1.9E-31 T 15-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 NJ56_06240 fb7786ab362cf67342a12597eb194d21 79 Gene3D G3DSA:1.20.20.10 1 79 2.4E-34 T 15-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_06240 fb7786ab362cf67342a12597eb194d21 79 Hamap MF_01396 ATP synthase subunit c [atpH]. 10 75 14.452 T 15-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 NJ56_12985 84693e92061e35987cd489901d7f4e2f 328 Gene3D G3DSA:1.20.1330.10 40 274 4.7E-65 T 15-10-2018 NJ56_12985 84693e92061e35987cd489901d7f4e2f 328 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 194 2.8E-62 T 15-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 NJ56_12985 84693e92061e35987cd489901d7f4e2f 328 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 139 3.3E-21 T 15-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NJ56_12985 84693e92061e35987cd489901d7f4e2f 328 SUPERFAMILY SSF64518 2 326 3.14E-59 T 15-10-2018 NJ56_15405 9ce0113a215dd431d6f1f975c4d731fd 146 Pfam PF15941 FidL-like putative membrane protein 56 141 3.2E-14 T 15-10-2018 IPR031854 Putative membrane protein FidL-like NJ56_18200 287d26c0f128a7e67069d1ebf7b70681 615 TIGRFAM TIGR02750 TraN_Ftype: type-F conjugative transfer system mating-pair stabilization protein TraN 20 604 4.2E-146 T 15-10-2018 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN NJ56_18200 287d26c0f128a7e67069d1ebf7b70681 615 Pfam PF06986 Type-1V conjugative transfer system mating pair stabilisation 319 563 3.7E-78 T 15-10-2018 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN NJ56_07045 65f00b9b9aedc728e7e529fdd48e4fe0 292 SUPERFAMILY SSF64397 4 232 1.96E-76 T 15-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 NJ56_07045 65f00b9b9aedc728e7e529fdd48e4fe0 292 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 284 33.213 T 15-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 NJ56_07045 65f00b9b9aedc728e7e529fdd48e4fe0 292 PIRSF PIRSF005261 1 284 8.8E-75 T 15-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 NJ56_07045 65f00b9b9aedc728e7e529fdd48e4fe0 292 Gene3D G3DSA:3.90.1280.10 226 283 2.9E-23 T 15-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 NJ56_07045 65f00b9b9aedc728e7e529fdd48e4fe0 292 Gene3D G3DSA:3.55.30.10 1 176 2.2E-66 T 15-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 NJ56_07045 65f00b9b9aedc728e7e529fdd48e4fe0 292 SUPERFAMILY SSF118352 225 281 1.07E-19 T 15-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 NJ56_07045 65f00b9b9aedc728e7e529fdd48e4fe0 292 Pfam PF01430 Hsp33 protein 5 273 6.9E-86 T 15-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 NJ56_07045 65f00b9b9aedc728e7e529fdd48e4fe0 292 Gene3D G3DSA:1.10.287.480 177 225 5.0E-23 T 15-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily NJ56_01580 9ee2221f97fcc34b00162ad45acbd921 439 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 415 3.7E-157 T 15-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 NJ56_01580 9ee2221f97fcc34b00162ad45acbd921 439 Pfam PF05525 Branched-chain amino acid transport protein 7 427 1.3E-154 T 15-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 NJ56_04150 2b5f6d093cf8cf7223c24a39a0ddec3b 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 44.86 T 15-10-2018 IPR022894 Oligoribonuclease GO:0000175 NJ56_04150 2b5f6d093cf8cf7223c24a39a0ddec3b 181 SMART SM00479 7 180 2.1E-19 T 15-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III NJ56_04150 2b5f6d093cf8cf7223c24a39a0ddec3b 181 Pfam PF00929 Exonuclease 9 170 2.8E-34 T 15-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III NJ56_04150 2b5f6d093cf8cf7223c24a39a0ddec3b 181 SUPERFAMILY SSF53098 4 180 3.62E-48 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_04150 2b5f6d093cf8cf7223c24a39a0ddec3b 181 Gene3D G3DSA:3.30.420.10 1 181 5.7E-71 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_09220 62a12cfef4af5a4bf4f3b1cbc14286e1 241 Gene3D G3DSA:3.30.110.170 35 236 1.9E-50 T 15-10-2018 NJ56_09220 62a12cfef4af5a4bf4f3b1cbc14286e1 241 Pfam PF04402 Protein of unknown function (DUF541) 35 235 1.2E-44 T 15-10-2018 IPR007497 Protein of unknown function DUF541 NJ56_09220 62a12cfef4af5a4bf4f3b1cbc14286e1 241 Gene3D G3DSA:3.30.70.2970 44 151 1.9E-50 T 15-10-2018 NJ56_09375 c2d3571b83892b5d1e81c2cd571b640d 186 Gene3D G3DSA:2.30.30.830 123 183 5.8E-6 T 15-10-2018 NJ56_10505 b34a1a470e2ce186c3b9c4b0c824673c 422 Gene3D G3DSA:1.10.1790.10 227 327 1.8E-15 T 15-10-2018 NJ56_10505 b34a1a470e2ce186c3b9c4b0c824673c 422 Pfam PF00874 PRD domain 236 324 1.5E-18 T 15-10-2018 IPR011608 PRD domain GO:0006355 NJ56_10505 b34a1a470e2ce186c3b9c4b0c824673c 422 SUPERFAMILY SSF63520 209 328 1.7E-20 T 15-10-2018 IPR036634 PRD domain superfamily GO:0006355 NJ56_10480 7573a911919bf25f1467ae14c017c269 122 SUPERFAMILY SSF63520 50 115 5.36E-6 T 15-10-2018 IPR036634 PRD domain superfamily GO:0006355 NJ56_10525 6d036da0eecef92d6e5a42e6aed52528 257 SUPERFAMILY SSF75217 3 173 2.68E-39 T 15-10-2018 IPR029028 Alpha/beta knot methyltransferases NJ56_10525 6d036da0eecef92d6e5a42e6aed52528 257 PIRSF PIRSF004808 1 246 6.6E-77 T 15-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 NJ56_10525 6d036da0eecef92d6e5a42e6aed52528 257 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 240 2.4E-88 T 15-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 NJ56_10525 6d036da0eecef92d6e5a42e6aed52528 257 Pfam PF00588 SpoU rRNA Methylase family 5 154 1.5E-34 T 15-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 NJ56_10525 6d036da0eecef92d6e5a42e6aed52528 257 Gene3D G3DSA:3.40.1280.10 1 164 3.6E-66 T 15-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NJ56_10525 6d036da0eecef92d6e5a42e6aed52528 257 Gene3D G3DSA:1.10.8.590 170 255 6.7E-34 T 15-10-2018 NJ56_16480 71779484ce822117ed503527e32f5bee 129 Gene3D G3DSA:2.60.40.3230 24 128 9.0E-23 T 15-10-2018 IPR038483 YcfL-like superfamily NJ56_16480 71779484ce822117ed503527e32f5bee 129 Pfam PF07233 Protein of unknown function (DUF1425) 38 127 1.6E-24 T 15-10-2018 IPR010824 Protein of unknown function DUF1425 NJ56_17935 c129e84d8fa7082f189a6ab5badc55ba 175 Pfam PF04471 Restriction endonuclease 62 172 1.1E-16 T 15-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 NJ56_17935 c129e84d8fa7082f189a6ab5badc55ba 175 SUPERFAMILY SSF52980 66 172 2.04E-10 T 15-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 NJ56_08205 b20f1efbae96f0bad2df6e18e3f2c715 180 Pfam PF02470 MlaD protein 39 116 1.6E-19 T 15-10-2018 IPR003399 Mce/MlaD NJ56_08205 b20f1efbae96f0bad2df6e18e3f2c715 180 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 2 152 2.9E-54 T 15-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 NJ56_02490 6e005b0ded273c45a9766293ee892582 304 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 7 266 1.8E-112 T 15-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 NJ56_02490 6e005b0ded273c45a9766293ee892582 304 Gene3D G3DSA:3.40.50.620 82 219 4.3E-113 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_02490 6e005b0ded273c45a9766293ee892582 304 SUPERFAMILY SSF52374 7 286 1.63E-88 T 15-10-2018 NJ56_02490 6e005b0ded273c45a9766293ee892582 304 PRINTS PR00987 Glutamyl-tRNA synthetase signature 24 35 3.1E-14 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_02490 6e005b0ded273c45a9766293ee892582 304 PRINTS PR00987 Glutamyl-tRNA synthetase signature 171 181 3.1E-14 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_02490 6e005b0ded273c45a9766293ee892582 304 PRINTS PR00987 Glutamyl-tRNA synthetase signature 187 195 3.1E-14 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_02490 6e005b0ded273c45a9766293ee892582 304 PRINTS PR00987 Glutamyl-tRNA synthetase signature 39 52 3.1E-14 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_02490 6e005b0ded273c45a9766293ee892582 304 PRINTS PR00987 Glutamyl-tRNA synthetase signature 10 22 3.1E-14 T 15-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 NJ56_02490 6e005b0ded273c45a9766293ee892582 304 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 7 291 41.426 T 15-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 NJ56_02490 6e005b0ded273c45a9766293ee892582 304 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 10 236 2.1E-45 T 15-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 NJ56_02490 6e005b0ded273c45a9766293ee892582 304 Gene3D G3DSA:3.40.50.620 7 285 4.3E-113 T 15-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NJ56_14925 f89a0f63ec9eb1dc16a1692ec2868f50 215 Gene3D G3DSA:3.20.20.70 1 215 1.1E-74 T 15-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 NJ56_14925 f89a0f63ec9eb1dc16a1692ec2868f50 215 SMART SM00934 5 206 5.8E-28 T 15-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_14925 f89a0f63ec9eb1dc16a1692ec2868f50 215 SUPERFAMILY SSF51366 1 214 3.33E-37 T 15-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 NJ56_14925 f89a0f63ec9eb1dc16a1692ec2868f50 215 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 200 5.2E-27 T 15-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 NJ56_07055 b86b0e138d962d3fcdd2053a7e08e3c7 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 2.0E-7 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_07055 b86b0e138d962d3fcdd2053a7e08e3c7 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 2.0E-7 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_07055 b86b0e138d962d3fcdd2053a7e08e3c7 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 181 194 2.0E-7 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_07055 b86b0e138d962d3fcdd2053a7e08e3c7 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 2.0E-7 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_07055 b86b0e138d962d3fcdd2053a7e08e3c7 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 2.0E-7 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_07055 b86b0e138d962d3fcdd2053a7e08e3c7 229 SUPERFAMILY SSF56784 6 217 1.54E-44 T 15-10-2018 IPR036412 HAD-like superfamily NJ56_07055 b86b0e138d962d3fcdd2053a7e08e3c7 229 Gene3D G3DSA:3.40.50.1000 9 203 2.7E-26 T 15-10-2018 IPR023214 HAD superfamily NJ56_07055 b86b0e138d962d3fcdd2053a7e08e3c7 229 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 13 191 5.2E-18 T 15-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 NJ56_07055 b86b0e138d962d3fcdd2053a7e08e3c7 229 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 190 3.0E-11 T 15-10-2018 NJ56_03565 2a62f25c604857e61c65a83b6387d2a0 696 Gene3D G3DSA:3.40.50.300 455 640 7.7E-17 T 15-10-2018 NJ56_03565 2a62f25c604857e61c65a83b6387d2a0 696 SUPERFAMILY SSF52540 178 617 1.14E-39 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03565 2a62f25c604857e61c65a83b6387d2a0 696 Gene3D G3DSA:3.40.50.300 178 379 2.1E-20 T 15-10-2018 NJ56_03565 2a62f25c604857e61c65a83b6387d2a0 696 Pfam PF13245 AAA domain 190 366 1.4E-5 T 15-10-2018 NJ56_03565 2a62f25c604857e61c65a83b6387d2a0 696 Pfam PF13538 UvrD-like helicase C-terminal domain 561 611 4.8E-12 T 15-10-2018 IPR027785 UvrD-like helicase C-terminal domain NJ56_15545 932bd393533e963c607c2d645b587184 286 SUPERFAMILY SSF46785 5 93 2.52E-14 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_15545 932bd393533e963c607c2d645b587184 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.9E-14 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_15545 932bd393533e963c607c2d645b587184 286 Gene3D G3DSA:1.10.10.10 3 91 3.6E-17 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_13775 b884f721695353070fc3809e07d6e14f 190 Pfam PF03498 Cytolethal distending toxin A/C domain 52 189 1.2E-8 T 15-10-2018 IPR003558 Cytolethal distending toxin A/C GO:0009405 NJ56_13775 b884f721695353070fc3809e07d6e14f 190 Gene3D G3DSA:2.80.10.50 36 190 4.1E-25 T 15-10-2018 NJ56_13775 b884f721695353070fc3809e07d6e14f 190 SUPERFAMILY SSF50370 41 189 4.22E-16 T 15-10-2018 IPR035992 Ricin B-like lectins NJ56_00925 b498baeb0f3c8203c1c52ac309ecd1d0 236 Gene3D G3DSA:1.10.443.10 69 219 2.9E-22 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_00925 b498baeb0f3c8203c1c52ac309ecd1d0 236 Pfam PF00589 Phage integrase family 78 202 2.1E-27 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_00925 b498baeb0f3c8203c1c52ac309ecd1d0 236 SUPERFAMILY SSF56349 81 214 9.71E-25 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_14515 0557add4c0a6ce697cb9429a7786d31b 383 PIRSF PIRSF003085 3 379 5.9E-126 T 15-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 NJ56_14515 0557add4c0a6ce697cb9429a7786d31b 383 Pfam PF02353 Mycolic acid cyclopropane synthetase 108 368 1.2E-100 T 15-10-2018 NJ56_14515 0557add4c0a6ce697cb9429a7786d31b 383 Gene3D G3DSA:3.40.50.150 117 376 7.6E-100 T 15-10-2018 NJ56_14515 0557add4c0a6ce697cb9429a7786d31b 383 SUPERFAMILY SSF53335 117 370 2.03E-78 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_15645 46e704ed1b0806f646add91798177d35 424 Pfam PF04285 Protein of unknown function (DUF444) 4 420 7.6E-185 T 15-10-2018 IPR006698 Uncharacterised protein family UPF0229 NJ56_15645 46e704ed1b0806f646add91798177d35 424 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 422 41.43 T 15-10-2018 IPR006698 Uncharacterised protein family UPF0229 NJ56_18195 e87f3bf9a08a3a71ee24a7582bbe6b1a 203 Pfam PF09673 Type-F conjugative transfer system pilin assembly protein 87 174 9.6E-19 T 15-10-2018 IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC NJ56_18195 e87f3bf9a08a3a71ee24a7582bbe6b1a 203 TIGRFAM TIGR02742 TrbC_Ftype: type-F conjugative transfer system pilin assembly protein TrbC 86 199 3.0E-32 T 15-10-2018 IPR014113 Type-F conjugative transfer system pilin assembly protein TrbC, subgroup NJ56_04270 d0170bf6d8aa0222385549ebec394c05 433 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 365 5.3E-141 T 15-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 NJ56_04270 d0170bf6d8aa0222385549ebec394c05 433 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 433 1.3E-194 T 15-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 NJ56_04270 d0170bf6d8aa0222385549ebec394c05 433 PIRSF PIRSF004539 1 433 7.9E-174 T 15-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 NJ56_05010 77712d4fc52f3b031418ff7719c6dd02 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 293 6.5E-18 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_05010 77712d4fc52f3b031418ff7719c6dd02 295 Gene3D G3DSA:1.10.3720.10 52 293 1.4E-57 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_05010 77712d4fc52f3b031418ff7719c6dd02 295 SUPERFAMILY SSF161098 56 283 6.41E-50 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_09445 153fca9cc779262a974117684eb858b4 295 SUPERFAMILY SSF56281 27 251 5.08E-39 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_09445 153fca9cc779262a974117684eb858b4 295 Gene3D G3DSA:3.60.15.10 23 262 3.6E-26 T 15-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NJ56_09445 153fca9cc779262a974117684eb858b4 295 SMART SM00849 43 228 4.2E-17 T 15-10-2018 IPR001279 Metallo-beta-lactamase NJ56_09445 153fca9cc779262a974117684eb858b4 295 Pfam PF00753 Metallo-beta-lactamase superfamily 44 228 9.1E-7 T 15-10-2018 IPR001279 Metallo-beta-lactamase NJ56_07900 72ae1265e470641aa837f5b856045edb 455 Pfam PF00860 Permease family 32 415 6.9E-83 T 15-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 NJ56_01220 2453ab0346a3f09110a28605452007e4 187 SUPERFAMILY SSF53271 18 184 7.67E-53 T 15-10-2018 IPR029057 Phosphoribosyltransferase-like NJ56_01220 2453ab0346a3f09110a28605452007e4 187 Gene3D G3DSA:3.40.50.2020 2 187 2.3E-68 T 15-10-2018 NJ56_01220 2453ab0346a3f09110a28605452007e4 187 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 15 184 38.527 T 15-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 NJ56_01220 2453ab0346a3f09110a28605452007e4 187 Pfam PF00156 Phosphoribosyl transferase domain 35 170 5.1E-16 T 15-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 NJ56_01220 2453ab0346a3f09110a28605452007e4 187 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 15 183 8.7E-72 T 15-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 NJ56_03505 86987980d0b30973b3e3b9c7acabc510 209 Pfam PF11726 Inovirus Gp2 21 207 1.3E-54 T 15-10-2018 NJ56_01920 6db0d5d11c8e151cdaf5999d2eb9efbb 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 15-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NJ56_01920 6db0d5d11c8e151cdaf5999d2eb9efbb 82 SUPERFAMILY SSF54565 1 76 1.57E-28 T 15-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01920 6db0d5d11c8e151cdaf5999d2eb9efbb 82 Gene3D G3DSA:3.30.1320.10 1 82 1.6E-30 T 15-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01920 6db0d5d11c8e151cdaf5999d2eb9efbb 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 4.8E-29 T 15-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01920 6db0d5d11c8e151cdaf5999d2eb9efbb 82 Pfam PF00886 Ribosomal protein S16 8 68 8.0E-24 T 15-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_01920 6db0d5d11c8e151cdaf5999d2eb9efbb 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.043 T 15-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 NJ56_04545 6bc74c4dd0ecc70652ac518035f3df73 180 Pfam PF04471 Restriction endonuclease 59 168 2.2E-16 T 15-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 NJ56_04545 6bc74c4dd0ecc70652ac518035f3df73 180 SUPERFAMILY SSF52980 64 142 6.97E-9 T 15-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 NJ56_02000 0d97252fac58ae9dccf7e5c96c5280a2 164 Pfam PF02464 Competence-damaged protein 8 158 1.6E-58 T 15-10-2018 IPR008136 CinA, C-terminal NJ56_02000 0d97252fac58ae9dccf7e5c96c5280a2 164 Gene3D G3DSA:3.90.950.20 1 161 1.4E-60 T 15-10-2018 IPR036653 CinA-like, C-terminal NJ56_02000 0d97252fac58ae9dccf7e5c96c5280a2 164 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 13 157 5.8E-57 T 15-10-2018 IPR008136 CinA, C-terminal NJ56_02000 0d97252fac58ae9dccf7e5c96c5280a2 164 SUPERFAMILY SSF142433 8 160 2.22E-57 T 15-10-2018 IPR036653 CinA-like, C-terminal NJ56_15690 b46caf40b5c84615c9e1999521c9048c 511 Pfam PF04293 SpoVR like protein 20 451 2.2E-176 T 15-10-2018 IPR007390 Sporulation stage V, protein R NJ56_01900 cec03aa320e61fddd79af8166c4ac4aa 255 Pfam PF04338 Protein of unknown function, DUF481 50 254 9.7E-58 T 15-10-2018 IPR007433 Protein of unknown function DUF481 NJ56_02570 32ad466a8fb3ce8ca6ae29827e314339 120 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 117 6.6E-45 T 15-10-2018 IPR008249 Uncharacterised protein family UPF0231 NJ56_02570 32ad466a8fb3ce8ca6ae29827e314339 120 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 119 29.968 T 15-10-2018 IPR008249 Uncharacterised protein family UPF0231 NJ56_02570 32ad466a8fb3ce8ca6ae29827e314339 120 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 117 2.0E-55 T 15-10-2018 IPR008249 Uncharacterised protein family UPF0231 NJ56_02570 32ad466a8fb3ce8ca6ae29827e314339 120 PIRSF PIRSF006287 1 120 1.9E-50 T 15-10-2018 IPR008249 Uncharacterised protein family UPF0231 NJ56_13295 99b55acdb6cda32ee9d118b947a31235 212 Pfam PF04717 Type VI secretion system, phage-baseplate injector 9 119 1.6E-44 T 15-10-2018 IPR006531 Gp5 N-terminal NJ56_13295 99b55acdb6cda32ee9d118b947a31235 212 Gene3D G3DSA:2.60.220.40 91 163 1.5E-29 T 15-10-2018 NJ56_13295 99b55acdb6cda32ee9d118b947a31235 212 Gene3D G3DSA:2.40.50.230 1 89 1.4E-33 T 15-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily NJ56_13295 99b55acdb6cda32ee9d118b947a31235 212 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 12 205 1.2E-61 T 15-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 NJ56_09100 e5c6d9a521e0c040fc14f6d5d4348325 184 Pfam PF02325 YGGT family 10 76 9.3E-19 T 15-10-2018 IPR003425 CCB3/YggT GO:0016020 NJ56_09100 e5c6d9a521e0c040fc14f6d5d4348325 184 Pfam PF02325 YGGT family 108 171 8.9E-19 T 15-10-2018 IPR003425 CCB3/YggT GO:0016020 NJ56_13650 ad3fedc92fde837760abf2e763334f3c 503 PIRSF PIRSF006060 2 501 1.6E-40 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_13650 ad3fedc92fde837760abf2e763334f3c 503 Gene3D G3DSA:1.20.1740.10 3 491 4.3E-49 T 15-10-2018 NJ56_13650 ad3fedc92fde837760abf2e763334f3c 503 Pfam PF13520 Amino acid permease 9 443 7.2E-63 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_14990 1f808860197fbbf187c0b8721d93ba8d 283 PIRSF PIRSF030125 8 283 1.2E-91 T 15-10-2018 IPR016946 Uncharacterised conserved protein UCP030125 NJ56_15885 858c3286c07b93ec430329703e3d781c 241 Gene3D G3DSA:3.40.50.150 12 241 1.5E-65 T 15-10-2018 NJ56_15885 858c3286c07b93ec430329703e3d781c 241 PIRSF PIRSF006325 1 237 1.1E-128 T 15-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 NJ56_15885 858c3286c07b93ec430329703e3d781c 241 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 1 236 2.0E-124 T 15-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 NJ56_15885 858c3286c07b93ec430329703e3d781c 241 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 2 236 40.503 T 15-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 NJ56_15885 858c3286c07b93ec430329703e3d781c 241 SUPERFAMILY SSF53335 14 236 8.21E-41 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_15885 858c3286c07b93ec430329703e3d781c 241 Pfam PF13649 Methyltransferase domain 54 152 2.8E-14 T 15-10-2018 NJ56_00435 4804fbc8fe809f6248a793008fd9c104 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 8 29 3.3E-8 T 15-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 NJ56_00435 4804fbc8fe809f6248a793008fd9c104 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 5 29 1.6E-9 T 15-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 NJ56_18155 15f7afcb2e33581ed3a1b3146e08eebc 188 Pfam PF05309 TraE protein 1 180 1.8E-50 T 15-10-2018 IPR007973 Pilus assembly TraE GO:0000746 NJ56_18155 15f7afcb2e33581ed3a1b3146e08eebc 188 TIGRFAM TIGR02761 TraE_TIGR: type IV conjugative transfer system protein TraE 1 180 5.9E-44 T 15-10-2018 IPR007973 Pilus assembly TraE GO:0000746 NJ56_14730 7cd6fc83cd26bd16962274165d2e7323 80 Pfam PF09584 Phage shock protein PspD (Phageshock_PspD) 12 70 1.5E-24 T 15-10-2018 IPR014321 Phage shock protein, PspD NJ56_14730 7cd6fc83cd26bd16962274165d2e7323 80 TIGRFAM TIGR02979 phageshock_pspD: phage shock protein PspD 16 66 7.4E-21 T 15-10-2018 IPR014321 Phage shock protein, PspD NJ56_03725 5973526942378226eb239266a20ad543 331 Pfam PF01136 Peptidase family U32 76 330 1.2E-65 T 15-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 NJ56_03725 5973526942378226eb239266a20ad543 331 SUPERFAMILY SSF51391 11 161 1.83E-5 T 15-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 NJ56_03725 5973526942378226eb239266a20ad543 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 15-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 NJ56_12035 89ef24580fd2c816c06c5db112f9511a 207 SUPERFAMILY SSF53955 26 205 5.06E-41 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_12035 89ef24580fd2c816c06c5db112f9511a 207 Pfam PF00182 Chitinase class I 104 169 3.1E-8 T 15-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 NJ56_10440 5a5e85eb75f0bdeeb11d542757f29e54 329 ProDom PD117379 LIPOPROTEIN YFHG HELIX ALPHA REGULATOR MEMBRANE TRANSCRIPTIONAL FAMILIIY EBP TWO-COMPONENT 32 242 1.0E-91 T 15-10-2018 NJ56_10440 5a5e85eb75f0bdeeb11d542757f29e54 329 Pfam PF13942 YfhG lipoprotein 67 240 4.2E-79 T 15-10-2018 IPR025262 Quorum-sensing regulator protein G NJ56_16890 6ffe37efdfa7f24684a9f34924b84202 69 SUPERFAMILY SSF50249 4 68 6.29E-25 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_16890 6ffe37efdfa7f24684a9f34924b84202 69 PRINTS PR00050 Cold shock protein signature 6 21 6.0E-16 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_16890 6ffe37efdfa7f24684a9f34924b84202 69 PRINTS PR00050 Cold shock protein signature 27 36 6.0E-16 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_16890 6ffe37efdfa7f24684a9f34924b84202 69 PRINTS PR00050 Cold shock protein signature 42 60 6.0E-16 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_16890 6ffe37efdfa7f24684a9f34924b84202 69 PIRSF PIRSF002599 1 69 1.2E-24 T 15-10-2018 IPR012156 Cold shock, CspA GO:0003676 NJ56_16890 6ffe37efdfa7f24684a9f34924b84202 69 SMART SM00357 5 69 4.5E-29 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_16890 6ffe37efdfa7f24684a9f34924b84202 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 8.9E-31 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_16890 6ffe37efdfa7f24684a9f34924b84202 69 Gene3D G3DSA:2.40.50.140 1 68 4.1E-30 T 15-10-2018 NJ56_16890 6ffe37efdfa7f24684a9f34924b84202 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 15-10-2018 IPR019844 Cold-shock conserved site NJ56_12675 17c1c22493e29a856ea066ab1ad0461b 487 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 25 480 1.3E-160 T 15-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 NJ56_12675 17c1c22493e29a856ea066ab1ad0461b 487 Pfam PF00939 Sodium:sulfate symporter transmembrane region 5 484 3.8E-169 T 15-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 NJ56_12675 17c1c22493e29a856ea066ab1ad0461b 487 PIRSF PIRSF002457 1 487 1.2E-153 T 15-10-2018 IPR030676 Citrate carrier CitT-related NJ56_05210 b3a327f5c91aa1d1e1c8844674fc715a 292 SUPERFAMILY SSF56931 40 291 1.83E-92 T 15-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 NJ56_05210 b3a327f5c91aa1d1e1c8844674fc715a 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 103 119 4.6E-81 T 15-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 NJ56_05210 b3a327f5c91aa1d1e1c8844674fc715a 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 239 256 4.6E-81 T 15-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 NJ56_05210 b3a327f5c91aa1d1e1c8844674fc715a 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 261 281 4.6E-81 T 15-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 NJ56_05210 b3a327f5c91aa1d1e1c8844674fc715a 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 81 98 4.6E-81 T 15-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 NJ56_05210 b3a327f5c91aa1d1e1c8844674fc715a 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 156 170 4.6E-81 T 15-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 NJ56_05210 b3a327f5c91aa1d1e1c8844674fc715a 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 126 145 4.6E-81 T 15-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 NJ56_05210 b3a327f5c91aa1d1e1c8844674fc715a 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 171 189 4.6E-81 T 15-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 NJ56_05210 b3a327f5c91aa1d1e1c8844674fc715a 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 206 224 4.6E-81 T 15-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 NJ56_05210 b3a327f5c91aa1d1e1c8844674fc715a 292 Pfam PF02253 Phospholipase A1 43 288 5.5E-96 T 15-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 NJ56_05210 b3a327f5c91aa1d1e1c8844674fc715a 292 Gene3D G3DSA:2.40.230.10 33 292 1.4E-104 T 15-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 NJ56_03525 c9dd6ab13e45bfc2f4b5d685f6710ce9 153 Pfam PF11682 Probable zinc-ribbon 48 143 1.5E-13 T 15-10-2018 IPR021696 Protein of unknown function DUF3279 NJ56_11575 a955db5fdfc7d9c6071d16cd935d3f2c 302 SUPERFAMILY SSF51735 1 298 1.36E-42 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_11575 a955db5fdfc7d9c6071d16cd935d3f2c 302 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 214 3.5E-19 T 15-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 NJ56_11575 a955db5fdfc7d9c6071d16cd935d3f2c 302 Gene3D G3DSA:3.40.50.720 1 287 9.4E-77 T 15-10-2018 NJ56_11575 a955db5fdfc7d9c6071d16cd935d3f2c 302 Pfam PF08338 Domain of unknown function (DUF1731) 250 295 1.8E-19 T 15-10-2018 IPR013549 Domain of unknown function DUF1731 NJ56_11575 a955db5fdfc7d9c6071d16cd935d3f2c 302 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 293 6.1E-111 T 15-10-2018 IPR010099 Epimerase family protein SDR39U1 NJ56_16430 9cc7c5bac55cc8c0b7270dfbace89962 234 Gene3D G3DSA:3.40.50.300 4 230 2.5E-66 T 15-10-2018 NJ56_16430 9cc7c5bac55cc8c0b7270dfbace89962 234 Pfam PF00005 ABC transporter 26 174 7.3E-35 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_16430 9cc7c5bac55cc8c0b7270dfbace89962 234 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 6 225 3.6E-108 T 15-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 NJ56_16430 9cc7c5bac55cc8c0b7270dfbace89962 234 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_16430 9cc7c5bac55cc8c0b7270dfbace89962 234 SUPERFAMILY SSF52540 6 226 4.42E-67 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_16430 9cc7c5bac55cc8c0b7270dfbace89962 234 SMART SM00382 35 223 9.2E-11 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_16390 4be1b9368ab139e7c1ae356f19e2c662 207 Pfam PF13505 Outer membrane protein beta-barrel domain 6 187 1.3E-7 T 15-10-2018 IPR027385 Outer membrane protein beta-barrel NJ56_16390 4be1b9368ab139e7c1ae356f19e2c662 207 SUPERFAMILY SSF56925 26 165 2.54E-8 T 15-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel NJ56_01225 be545001f2dd3b34578d67128d39ac7a 126 Pfam PF04304 Protein of unknown function (DUF454) 4 116 8.8E-41 T 15-10-2018 IPR007401 Protein of unknown function DUF454 NJ56_01225 be545001f2dd3b34578d67128d39ac7a 126 PIRSF PIRSF016789 2 123 1.3E-47 T 15-10-2018 IPR007401 Protein of unknown function DUF454 NJ56_15225 a62ffe359373f2b7e2b2edcbd4feffcb 253 SMART SM00014 76 227 9.4E-26 T 15-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NJ56_15225 a62ffe359373f2b7e2b2edcbd4feffcb 253 SUPERFAMILY SSF48317 9 234 1.06E-29 T 15-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily NJ56_15225 a62ffe359373f2b7e2b2edcbd4feffcb 253 Gene3D G3DSA:1.20.144.10 2 253 6.9E-80 T 15-10-2018 NJ56_15225 a62ffe359373f2b7e2b2edcbd4feffcb 253 Pfam PF01569 PAP2 superfamily 80 232 1.1E-28 T 15-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NJ56_00990 8eb56d33a76204aec970ea922c8de093 300 SUPERFAMILY SSF46894 26 103 2.83E-9 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_00990 8eb56d33a76204aec970ea922c8de093 300 SMART SM00862 27 104 1.4E-4 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_00990 8eb56d33a76204aec970ea922c8de093 300 Pfam PF00486 Transcriptional regulatory protein, C terminal 30 102 1.8E-6 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_00990 8eb56d33a76204aec970ea922c8de093 300 Gene3D G3DSA:1.10.10.10 11 107 3.4E-9 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_07815 550fb71c3d9f5320cdec709c65c20dc7 307 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 80 211 4.4E-52 T 15-10-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 NJ56_07275 4153b23e53f7065b07d2818f38fa26a6 184 Gene3D G3DSA:3.40.50.360 7 179 1.4E-50 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_07275 4153b23e53f7065b07d2818f38fa26a6 184 Pfam PF02525 Flavodoxin-like fold 7 174 3.8E-40 T 15-10-2018 IPR003680 Flavodoxin-like fold NJ56_07275 4153b23e53f7065b07d2818f38fa26a6 184 SUPERFAMILY SSF52218 6 176 2.79E-47 T 15-10-2018 IPR029039 Flavoprotein-like superfamily NJ56_07275 4153b23e53f7065b07d2818f38fa26a6 184 Hamap MF_01415 Glutathione-regulated potassium-efflux system ancillary protein KefG [kefG]. 2 183 50.636 T 15-10-2018 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 NJ56_01405 a58b0e9c5fd34bf1916dd4f485f3eff2 492 Pfam PF07690 Major Facilitator Superfamily 18 366 1.6E-32 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_01405 a58b0e9c5fd34bf1916dd4f485f3eff2 492 TIGRFAM TIGR00901 2A0125: AmpG-like permease 25 363 1.4E-119 T 15-10-2018 NJ56_01405 a58b0e9c5fd34bf1916dd4f485f3eff2 492 SUPERFAMILY SSF103473 8 403 2.22E-44 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_01405 a58b0e9c5fd34bf1916dd4f485f3eff2 492 Gene3D G3DSA:1.20.1250.20 213 407 3.7E-15 T 15-10-2018 NJ56_01405 a58b0e9c5fd34bf1916dd4f485f3eff2 492 Gene3D G3DSA:1.20.1250.20 4 197 1.1E-17 T 15-10-2018 NJ56_06490 799dc5f52f03335ef11a0943bbe34ca5 338 Pfam PF05229 Spore Coat Protein U domain 194 334 5.0E-22 T 15-10-2018 IPR007893 Spore coat protein U NJ56_06490 799dc5f52f03335ef11a0943bbe34ca5 338 Pfam PF05229 Spore Coat Protein U domain 21 166 2.5E-7 T 15-10-2018 IPR007893 Spore coat protein U NJ56_04560 43aefd80efb177004194b29cfebf5ec1 241 TIGRFAM TIGR03759 conj_TIGR03759: integrating conjugative element protein, PFL_4693 family 47 237 3.0E-74 T 15-10-2018 IPR022293 Integrating conjugative element protein, PFL4693 NJ56_14660 5db5c60b37be72dc4ad8c4729d67d55c 504 SUPERFAMILY SSF103473 18 489 5.75E-30 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_14660 5db5c60b37be72dc4ad8c4729d67d55c 504 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 154 166 - T 15-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 NJ56_14660 5db5c60b37be72dc4ad8c4729d67d55c 504 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 19 487 5.2E-138 T 15-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 NJ56_14660 5db5c60b37be72dc4ad8c4729d67d55c 504 Pfam PF00854 POT family 91 447 4.1E-87 T 15-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 NJ56_14660 5db5c60b37be72dc4ad8c4729d67d55c 504 Gene3D G3DSA:1.20.1250.20 13 488 2.1E-113 T 15-10-2018 NJ56_14660 5db5c60b37be72dc4ad8c4729d67d55c 504 Hamap MF_01878 Dipeptide and tripeptide permease A [dtpA]. 1 491 53.177 T 15-10-2018 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A GO:0006857|GO:0016020|GO:1904680 NJ56_15355 25410f25951e5feb7a4fadc696630ed4 182 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 177 3.6E-70 T 15-10-2018 IPR006008 Intracellular septation protein A GO:0016021 NJ56_15355 25410f25951e5feb7a4fadc696630ed4 182 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 19.445 T 15-10-2018 IPR006008 Intracellular septation protein A GO:0016021 NJ56_15355 25410f25951e5feb7a4fadc696630ed4 182 Pfam PF04279 Intracellular septation protein A 1 174 1.6E-71 T 15-10-2018 IPR006008 Intracellular septation protein A GO:0016021 NJ56_03160 3955fc7192f5187e114659c9c2807444 391 SUPERFAMILY SSF52151 23 282 6.28E-43 T 15-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase NJ56_03160 3955fc7192f5187e114659c9c2807444 391 Gene3D G3DSA:3.40.1090.20 22 100 3.4E-5 T 15-10-2018 NJ56_03160 3955fc7192f5187e114659c9c2807444 391 Pfam PF01734 Patatin-like phospholipase 28 196 6.1E-21 T 15-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 NJ56_03160 3955fc7192f5187e114659c9c2807444 391 Gene3D G3DSA:3.40.1090.10 113 256 2.6E-5 T 15-10-2018 NJ56_10400 44f69022d27ee69016ae38c61a2971cc 455 Pfam PF00367 phosphotransferase system, EIIB 9 42 4.9E-13 T 15-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 NJ56_10400 44f69022d27ee69016ae38c61a2971cc 455 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 20 37 - T 15-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 NJ56_10400 44f69022d27ee69016ae38c61a2971cc 455 SUPERFAMILY SSF55604 7 81 1.83E-17 T 15-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 NJ56_10400 44f69022d27ee69016ae38c61a2971cc 455 Gene3D G3DSA:3.30.1360.60 1 79 3.7E-20 T 15-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 NJ56_10400 44f69022d27ee69016ae38c61a2971cc 455 Pfam PF02378 Phosphotransferase system, EIIC 119 393 1.1E-35 T 15-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 NJ56_06020 ec4c5aafead684a362cb06da60fd87da 468 Pfam PF00860 Permease family 40 432 2.0E-110 T 15-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 NJ56_06020 ec4c5aafead684a362cb06da60fd87da 468 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 381 401 - T 15-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 NJ56_06020 ec4c5aafead684a362cb06da60fd87da 468 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 35 463 7.5E-140 T 15-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 NJ56_06020 ec4c5aafead684a362cb06da60fd87da 468 TIGRFAM TIGR03173 pbuX: xanthine permease 45 465 4.6E-127 T 15-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 NJ56_07560 aa93296b6225ad3d543a93c30a580f27 180 SUPERFAMILY SSF51161 5 176 1.52E-45 T 15-10-2018 IPR011004 Trimeric LpxA-like superfamily NJ56_07560 aa93296b6225ad3d543a93c30a580f27 180 Gene3D G3DSA:2.160.10.10 1 180 1.9E-56 T 15-10-2018 NJ56_07560 aa93296b6225ad3d543a93c30a580f27 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 47 1.7E-5 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_07560 aa93296b6225ad3d543a93c30a580f27 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 131 3.4E-8 T 15-10-2018 IPR001451 Hexapeptide repeat NJ56_06090 5ac75e6eba999576524c4d9dfe83dfee 216 Pfam PF01926 50S ribosome-binding GTPase 30 148 2.4E-20 T 15-10-2018 IPR006073 GTP binding domain GO:0005525 NJ56_06090 5ac75e6eba999576524c4d9dfe83dfee 216 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 12 195 9.1E-74 T 15-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 NJ56_06090 5ac75e6eba999576524c4d9dfe83dfee 216 SUPERFAMILY SSF52540 19 201 2.59E-36 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_06090 5ac75e6eba999576524c4d9dfe83dfee 216 Gene3D G3DSA:3.40.50.300 3 206 1.1E-58 T 15-10-2018 NJ56_06090 5ac75e6eba999576524c4d9dfe83dfee 216 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 16 199 27.716 T 15-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 NJ56_09610 e25bd68c70ae8a57ff5afc059e949fcc 64 SUPERFAMILY SSF50182 21 63 8.18E-12 T 15-10-2018 IPR010920 LSM domain superfamily NJ56_09610 e25bd68c70ae8a57ff5afc059e949fcc 64 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 64 4.7E-13 T 15-10-2018 IPR010305 Protein of unknown function DUF903 NJ56_09610 e25bd68c70ae8a57ff5afc059e949fcc 64 Gene3D G3DSA:2.30.30.100 20 64 1.6E-14 T 15-10-2018 NJ56_11885 b3478c804e84ee74ad3c884596ab9db6 381 Pfam PF00144 Beta-lactamase 47 359 4.9E-62 T 15-10-2018 IPR001466 Beta-lactamase-related NJ56_11885 b3478c804e84ee74ad3c884596ab9db6 381 SUPERFAMILY SSF56601 34 359 1.01E-67 T 15-10-2018 IPR012338 Beta-lactamase/transpeptidase-like NJ56_11885 b3478c804e84ee74ad3c884596ab9db6 381 Gene3D G3DSA:3.40.710.10 29 378 9.9E-129 T 15-10-2018 NJ56_03810 cee71d5fa88f6f042a0b3ec9f9eec420 111 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 2.3E-26 T 15-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 NJ56_03810 cee71d5fa88f6f042a0b3ec9f9eec420 111 Pfam PF03840 Preprotein translocase SecG subunit 5 72 5.1E-22 T 15-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 NJ56_03810 cee71d5fa88f6f042a0b3ec9f9eec420 111 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 1.1E-41 T 15-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 NJ56_03810 cee71d5fa88f6f042a0b3ec9f9eec420 111 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 1.1E-41 T 15-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 NJ56_03810 cee71d5fa88f6f042a0b3ec9f9eec420 111 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 1.1E-41 T 15-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 NJ56_03810 cee71d5fa88f6f042a0b3ec9f9eec420 111 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 1.1E-41 T 15-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 NJ56_12470 ac8b480bc55f2e9f213d30989f56bd98 184 SUPERFAMILY SSF52540 1 167 1.71E-8 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_12470 ac8b480bc55f2e9f213d30989f56bd98 184 Gene3D G3DSA:3.40.50.300 1 180 1.4E-12 T 15-10-2018 NJ56_08800 efdc9df299bf97cde2b5b69da104a41d 220 Pfam PF09335 SNARE associated Golgi protein 48 172 3.4E-17 T 15-10-2018 IPR032816 SNARE associated Golgi protein NJ56_12240 2ed4ec2b73b3e239b60148784c56df0f 365 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 152 359 5.1E-38 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_12240 2ed4ec2b73b3e239b60148784c56df0f 365 SUPERFAMILY SSF161098 132 346 6.54E-16 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_12240 2ed4ec2b73b3e239b60148784c56df0f 365 Gene3D G3DSA:1.10.3720.10 122 354 6.7E-19 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_14035 dc700078d01f175d61759974ec293d0e 294 Pfam PF05425 Copper resistance protein D 189 287 7.5E-20 T 15-10-2018 IPR008457 Copper resistance protein D GO:0016021 NJ56_16200 a5f703a16251bb4c4ba19a81d42a7e95 271 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 7 264 6.8E-112 T 15-10-2018 IPR010247 N-formylglutamate deformylase NJ56_16200 a5f703a16251bb4c4ba19a81d42a7e95 271 Pfam PF05013 N-formylglutamate amidohydrolase 15 232 2.9E-63 T 15-10-2018 IPR007709 N-formylglutamate amidohydrolase NJ56_16200 a5f703a16251bb4c4ba19a81d42a7e95 271 SUPERFAMILY SSF53187 5 260 1.88E-75 T 15-10-2018 NJ56_16200 a5f703a16251bb4c4ba19a81d42a7e95 271 Gene3D G3DSA:3.40.630.40 3 262 4.3E-68 T 15-10-2018 NJ56_02655 9eb6acf1c806e9f67ba0de3c256a9051 250 Pfam PF07072 Cell division protein 22 228 2.1E-77 T 15-10-2018 IPR009777 Cell division protein ZapD NJ56_02655 9eb6acf1c806e9f67ba0de3c256a9051 250 Hamap MF_01092 Cell division protein ZapD [zapD]. 7 250 32.472 T 15-10-2018 IPR009777 Cell division protein ZapD NJ56_02655 9eb6acf1c806e9f67ba0de3c256a9051 250 SUPERFAMILY SSF160950 6 250 3.66E-91 T 15-10-2018 IPR036268 ZapD domain superfamily NJ56_02655 9eb6acf1c806e9f67ba0de3c256a9051 250 Gene3D G3DSA:1.10.3900.10 16 182 1.4E-83 T 15-10-2018 NJ56_02655 9eb6acf1c806e9f67ba0de3c256a9051 250 Gene3D G3DSA:2.60.440.10 9 250 1.4E-83 T 15-10-2018 IPR027462 Z ring-associated protein D, C-terminal NJ56_07915 64d90f2daadf1a1caec07c5d0bca3c2f 141 Pfam PF03788 LrgA family 30 122 1.6E-26 T 15-10-2018 IPR005538 LrgA/CidA family GO:0016021 NJ56_00080 99ff9e6438f25665816a280c1c395129 302 Pfam PF01933 Uncharacterised protein family UPF0052 12 292 2.7E-72 T 15-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 NJ56_00080 99ff9e6438f25665816a280c1c395129 302 SUPERFAMILY SSF142338 11 294 4.05E-79 T 15-10-2018 NJ56_00080 99ff9e6438f25665816a280c1c395129 302 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 12 269 1.6E-93 T 15-10-2018 IPR010119 Gluconeogenesis factor NJ56_00080 99ff9e6438f25665816a280c1c395129 302 Gene3D G3DSA:3.40.50.12300 9 300 8.4E-75 T 15-10-2018 IPR038136 Gluconeogenesis factor superfamily NJ56_00080 99ff9e6438f25665816a280c1c395129 302 Hamap MF_00973 Gluconeogenesis factor. 8 300 30.864 T 15-10-2018 IPR010119 Gluconeogenesis factor NJ56_05750 e5fdd4e9617d9a7be80a231451c207b5 394 Pfam PF07690 Major Facilitator Superfamily 14 349 3.4E-40 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_05750 e5fdd4e9617d9a7be80a231451c207b5 394 SUPERFAMILY SSF103473 7 388 1.83E-58 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_05750 e5fdd4e9617d9a7be80a231451c207b5 394 Gene3D G3DSA:1.20.1720.10 9 383 1.4E-122 T 15-10-2018 NJ56_18065 8a8fd66222aa140055f2dd31baa9d559 139 SUPERFAMILY SSF51306 15 136 2.44E-34 T 15-10-2018 IPR036286 LexA/Signal peptidase-like superfamily NJ56_18065 8a8fd66222aa140055f2dd31baa9d559 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 92 104 1.0E-8 T 15-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NJ56_18065 8a8fd66222aa140055f2dd31baa9d559 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 64 75 1.0E-8 T 15-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NJ56_18065 8a8fd66222aa140055f2dd31baa9d559 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 53 63 1.0E-8 T 15-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NJ56_18065 8a8fd66222aa140055f2dd31baa9d559 139 Pfam PF00717 Peptidase S24-like 57 122 1.4E-13 T 15-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C NJ56_18065 8a8fd66222aa140055f2dd31baa9d559 139 Gene3D G3DSA:2.10.109.10 26 138 3.8E-46 T 15-10-2018 NJ56_09645 c50ff59395788d76b9ec7d2cb12a4d04 188 Pfam PF07348 Syd protein (SUKH-2) 7 179 3.3E-72 T 15-10-2018 IPR009948 Syd GO:0009898 NJ56_09645 c50ff59395788d76b9ec7d2cb12a4d04 188 Gene3D G3DSA:3.40.1580.20 1 181 7.1E-69 T 15-10-2018 IPR038228 Syd superfamily NJ56_09645 c50ff59395788d76b9ec7d2cb12a4d04 188 Hamap MF_01104 Protein Syd [syd]. 3 181 36.697 T 15-10-2018 IPR009948 Syd GO:0009898 NJ56_06605 49c75d053a7ac3f75076cf24a807b9df 77 Gene3D G3DSA:3.30.160.390 1 75 3.4E-28 T 15-10-2018 IPR038488 Integrase, DNA-binding domain superfamily NJ56_06605 49c75d053a7ac3f75076cf24a807b9df 77 Pfam PF13356 Arm DNA-binding domain 3 68 4.8E-12 T 15-10-2018 IPR025166 Integrase, DNA-binding domain NJ56_13925 f85ab735feb75ee2dd9f1152952b6849 181 Pfam PF02441 Flavoprotein 4 174 5.9E-29 T 15-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 NJ56_13925 f85ab735feb75ee2dd9f1152952b6849 181 SUPERFAMILY SSF52507 2 159 4.19E-36 T 15-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 NJ56_13925 f85ab735feb75ee2dd9f1152952b6849 181 Gene3D G3DSA:3.40.50.1950 1 180 2.8E-37 T 15-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 NJ56_09880 78dc04c5152512151b8c444a87f6f824 113 Pfam PF10043 Predicted periplasmic lipoprotein (DUF2279) 31 106 9.2E-8 T 15-10-2018 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein NJ56_09880 78dc04c5152512151b8c444a87f6f824 113 PIRSF PIRSF034456 8 113 1.7E-53 T 15-10-2018 IPR017028 Uncharacterised conserved protein UCP034456 NJ56_13425 f3860897126426c4827316bb99b979e1 294 Gene3D G3DSA:3.40.50.10190 205 294 2.8E-13 T 15-10-2018 IPR036420 BRCT domain superfamily NJ56_13425 f3860897126426c4827316bb99b979e1 294 SUPERFAMILY SSF52113 207 273 1.68E-6 T 15-10-2018 IPR036420 BRCT domain superfamily NJ56_10240 0da7cf87f9c1fcf292350688c39ac4da 658 Pfam PF13175 AAA ATPase domain 1 407 1.6E-20 T 15-10-2018 NJ56_10240 0da7cf87f9c1fcf292350688c39ac4da 658 Gene3D G3DSA:3.40.50.300 1 428 1.5E-16 T 15-10-2018 NJ56_10240 0da7cf87f9c1fcf292350688c39ac4da 658 SUPERFAMILY SSF52540 3 418 1.53E-14 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_09165 2ab57a09c7180cfe2dfaf24add716117 143 Pfam PF04143 Sulphur transport 10 131 1.1E-8 T 15-10-2018 IPR007272 Sulphur transport domain NJ56_06640 d43795d93f8017c6f70868c6dec53650 174 Pfam PF06210 Protein of unknown function (DUF1003) 50 151 1.4E-27 T 15-10-2018 IPR010406 Protein of unknown function DUF1003 NJ56_02435 5e77632a60ea9b5dfcafb5cf12aad7de 282 Gene3D G3DSA:3.40.50.1980 29 147 4.3E-36 T 15-10-2018 NJ56_02435 5e77632a60ea9b5dfcafb5cf12aad7de 282 Gene3D G3DSA:3.40.50.1980 151 274 2.3E-34 T 15-10-2018 NJ56_02435 5e77632a60ea9b5dfcafb5cf12aad7de 282 Hamap MF_01000 Vitamin B12-binding protein [btuF]. 11 275 49.169 T 15-10-2018 IPR023544 ABC transporter, vitamin B12-binding protein GO:0015889|GO:0031419|GO:0042597 NJ56_02435 5e77632a60ea9b5dfcafb5cf12aad7de 282 SUPERFAMILY SSF53807 30 271 1.06E-55 T 15-10-2018 NJ56_02435 5e77632a60ea9b5dfcafb5cf12aad7de 282 Pfam PF01497 Periplasmic binding protein 33 232 6.5E-24 T 15-10-2018 IPR002491 ABC transporter periplasmic binding domain NJ56_15320 2707bf1bb87be56325549d98fd7b1317 396 PIRSF PIRSF001413 1 396 1.3E-170 T 15-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 NJ56_15320 2707bf1bb87be56325549d98fd7b1317 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 7 388 1.2E-189 T 15-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 NJ56_15320 2707bf1bb87be56325549d98fd7b1317 396 SUPERFAMILY SSF53686 4 389 3.4E-143 T 15-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NJ56_15320 2707bf1bb87be56325549d98fd7b1317 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 373 1.6E-49 T 15-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme NJ56_15320 2707bf1bb87be56325549d98fd7b1317 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 15-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 NJ56_15320 2707bf1bb87be56325549d98fd7b1317 396 Gene3D G3DSA:3.40.50.1100 53 383 7.8E-183 T 15-10-2018 NJ56_15320 2707bf1bb87be56325549d98fd7b1317 396 Gene3D G3DSA:3.40.50.1100 9 204 7.8E-183 T 15-10-2018 NJ56_15320 2707bf1bb87be56325549d98fd7b1317 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 49.794 T 15-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 NJ56_13690 d5b4fa3fe6283e3ad4753be8a99989d6 453 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 12 440 3.2E-155 T 15-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 NJ56_13690 d5b4fa3fe6283e3ad4753be8a99989d6 453 PIRSF PIRSF006351 1 447 2.4E-125 T 15-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 NJ56_13690 d5b4fa3fe6283e3ad4753be8a99989d6 453 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 12 440 3.2E-155 T 15-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 NJ56_13690 d5b4fa3fe6283e3ad4753be8a99989d6 453 Pfam PF02378 Phosphotransferase system, EIIC 30 363 1.6E-44 T 15-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 NJ56_17865 bc376de1995ffa6221f9fff143d1ff73 466 SUPERFAMILY SSF53335 127 450 4.15E-38 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_17865 bc376de1995ffa6221f9fff143d1ff73 466 Gene3D G3DSA:3.40.50.150 129 437 4.5E-29 T 15-10-2018 NJ56_17865 bc376de1995ffa6221f9fff143d1ff73 466 Gene3D G3DSA:3.90.120.10 323 413 4.5E-29 T 15-10-2018 NJ56_17865 bc376de1995ffa6221f9fff143d1ff73 466 Pfam PF00145 C-5 cytosine-specific DNA methylase 184 440 3.1E-25 T 15-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 NJ56_08140 17fc9a6874d2e122ed8a25533ba607c5 90 Pfam PF00381 PTS HPr component phosphorylation site 4 84 7.7E-22 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_08140 17fc9a6874d2e122ed8a25533ba607c5 90 PRINTS PR00107 Phosphocarrier protein signature 55 72 1.6E-10 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_08140 17fc9a6874d2e122ed8a25533ba607c5 90 PRINTS PR00107 Phosphocarrier protein signature 40 55 1.6E-10 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_08140 17fc9a6874d2e122ed8a25533ba607c5 90 PRINTS PR00107 Phosphocarrier protein signature 14 30 1.6E-10 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_08140 17fc9a6874d2e122ed8a25533ba607c5 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 15-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site NJ56_08140 17fc9a6874d2e122ed8a25533ba607c5 90 SUPERFAMILY SSF55594 4 90 3.01E-23 T 15-10-2018 IPR035895 HPr-like superfamily NJ56_08140 17fc9a6874d2e122ed8a25533ba607c5 90 Gene3D G3DSA:3.30.1340.10 1 85 7.3E-31 T 15-10-2018 IPR035895 HPr-like superfamily NJ56_08140 17fc9a6874d2e122ed8a25533ba607c5 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 84 5.4E-21 T 15-10-2018 IPR000032 Phosphocarrier protein HPr-like NJ56_12775 be0fa3823b5747658b04d0f84f909517 119 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 12 97 7.0E-45 T 15-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 NJ56_12775 be0fa3823b5747658b04d0f84f909517 119 SUPERFAMILY SSF63592 4 101 3.14E-39 T 15-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily NJ56_12775 be0fa3823b5747658b04d0f84f909517 119 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 4 107 28.806 T 15-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 NJ56_12775 be0fa3823b5747658b04d0f84f909517 119 Pfam PF05247 Flagellar transcriptional activator (FlhD) 4 103 2.8E-40 T 15-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 NJ56_12775 be0fa3823b5747658b04d0f84f909517 119 Gene3D G3DSA:1.10.4000.10 4 119 3.1E-48 T 15-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily NJ56_08195 bcf4f8b2bf165e5df14f019ae2c5e26f 267 Gene3D G3DSA:3.40.50.300 6 251 4.6E-63 T 15-10-2018 NJ56_08195 bcf4f8b2bf165e5df14f019ae2c5e26f 267 SUPERFAMILY SSF52540 8 236 3.51E-62 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_08195 bcf4f8b2bf165e5df14f019ae2c5e26f 267 SMART SM00382 33 230 7.8E-14 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_08195 bcf4f8b2bf165e5df14f019ae2c5e26f 267 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_08195 bcf4f8b2bf165e5df14f019ae2c5e26f 267 Pfam PF00005 ABC transporter 25 172 1.4E-28 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_06685 6c693b9db281084577af015f4b789a56 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 1.5E-30 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_06685 6c693b9db281084577af015f4b789a56 300 Gene3D G3DSA:1.10.3720.10 88 295 6.6E-24 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_06685 6c693b9db281084577af015f4b789a56 300 SUPERFAMILY SSF161098 93 280 1.96E-29 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_06685 6c693b9db281084577af015f4b789a56 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 17 69 9.1E-14 T 15-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain NJ56_08365 391652e5cb1fab19d8ff893c2db2d906 132 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 17 128 1.1E-20 T 15-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III NJ56_15040 dc4be8706b678f5e424d421d50929937 270 SUPERFAMILY SSF53335 19 243 1.49E-12 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_15040 dc4be8706b678f5e424d421d50929937 270 Gene3D G3DSA:3.40.50.150 8 262 5.8E-9 T 15-10-2018 NJ56_15040 dc4be8706b678f5e424d421d50929937 270 Pfam PF04072 Leucine carboxyl methyltransferase 21 172 3.0E-8 T 15-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 NJ56_10625 9f13fda8f89028e486ba349b642f47a7 206 SUPERFAMILY SSF48452 92 190 1.58E-8 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_10625 9f13fda8f89028e486ba349b642f47a7 206 PIRSF PIRSF006170 1 206 4.0E-54 T 15-10-2018 IPR026039 Uncharacterised protein family UPF0070 NJ56_10625 9f13fda8f89028e486ba349b642f47a7 206 Pfam PF09976 Tetratricopeptide repeat-like domain 15 205 2.4E-55 T 15-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 NJ56_10625 9f13fda8f89028e486ba349b642f47a7 206 Gene3D G3DSA:1.25.40.10 92 204 1.6E-8 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_14750 25637a91f16ecd1397e0ff13e2fb0da9 148 TIGRFAM TIGR02293 TAS_TIGR02293: putative toxin-antitoxin system antitoxin component, TIGR02293 family 15 148 6.1E-53 T 15-10-2018 IPR011979 Conserved hypothetical protein CHP02293 NJ56_14750 25637a91f16ecd1397e0ff13e2fb0da9 148 Pfam PF09722 Protein of unknown function (DUF2384) 94 145 2.9E-14 T 15-10-2018 IPR024467 Domain of unknown function DUF2384 NJ56_14125 f833a76e5caf8f42f6515df03a27d574 237 SUPERFAMILY SSF48657 5 119 3.14E-39 T 15-10-2018 IPR036442 ProQ/FinO domain superfamily NJ56_14125 f833a76e5caf8f42f6515df03a27d574 237 Pfam PF17516 ProQ C-terminal domain 187 237 7.9E-25 T 15-10-2018 IPR035236 RNA chaperone ProQ, C-terminal NJ56_14125 f833a76e5caf8f42f6515df03a27d574 237 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 237 30.885 T 15-10-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 NJ56_14125 f833a76e5caf8f42f6515df03a27d574 237 Gene3D G3DSA:1.10.1710.10 1 129 1.1E-24 T 15-10-2018 IPR036442 ProQ/FinO domain superfamily NJ56_14125 f833a76e5caf8f42f6515df03a27d574 237 Pfam PF04352 ProQ/FINO family 8 115 1.1E-42 T 15-10-2018 IPR016103 ProQ/FinO domain NJ56_14125 f833a76e5caf8f42f6515df03a27d574 237 SMART SM00945 5 119 1.1E-60 T 15-10-2018 IPR016103 ProQ/FinO domain NJ56_10920 e1cf881cdb87f863db31ce956d4d03f9 63 Hamap MF_01566 UPF0370 protein YpfN [ypfN]. 1 62 26.828 T 15-10-2018 IPR020910 Uncharacterised protein family UPF0370 NJ56_10920 e1cf881cdb87f863db31ce956d4d03f9 63 Pfam PF13980 Uncharacterised protein family (UPF0370) 1 61 1.1E-35 T 15-10-2018 IPR020910 Uncharacterised protein family UPF0370 NJ56_15910 67f57e5c15d1c1d69ff26ae8f9bc8d11 181 Pfam PF12582 Protein of unknown function (DUF3757) 49 172 4.6E-16 T 15-10-2018 IPR022231 Protein of unknown function DUF3757 NJ56_08930 e68c02ed61b4e983190b0bcee045fb45 351 SUPERFAMILY SSF81345 20 345 4.05E-79 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_08930 e68c02ed61b4e983190b0bcee045fb45 351 Gene3D G3DSA:1.10.3470.10 22 349 1.0E-90 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_08930 e68c02ed61b4e983190b0bcee045fb45 351 Pfam PF01032 FecCD transport family 35 344 1.6E-88 T 15-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 NJ56_07765 206bf496b89b199cd52f3604ecafb875 561 Gene3D G3DSA:3.10.20.310 81 156 1.6E-10 T 15-10-2018 NJ56_07765 206bf496b89b199cd52f3604ecafb875 561 Gene3D G3DSA:2.40.160.50 182 554 7.9E-73 T 15-10-2018 NJ56_07765 206bf496b89b199cd52f3604ecafb875 561 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 210 523 2.1E-98 T 15-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal NJ56_07765 206bf496b89b199cd52f3604ecafb875 561 Pfam PF17287 POTRA domain 155 205 7.4E-15 T 15-10-2018 IPR035251 ShlB, POTRA domain NJ56_07765 206bf496b89b199cd52f3604ecafb875 561 Pfam PF08479 POTRA domain, ShlB-type 80 153 4.5E-20 T 15-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type NJ56_07765 206bf496b89b199cd52f3604ecafb875 561 PIRSF PIRSF029745 1 561 7.6E-127 T 15-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 NJ56_06995 200728b49a9baa6f895ec65b6ab88820 74 Pfam PF04023 FeoA domain 8 63 2.7E-7 T 15-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 NJ56_06995 200728b49a9baa6f895ec65b6ab88820 74 SUPERFAMILY SSF50037 6 70 5.8E-15 T 15-10-2018 IPR008988 Transcriptional repressor, C-terminal NJ56_06995 200728b49a9baa6f895ec65b6ab88820 74 SMART SM00899 1 72 8.0E-8 T 15-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 NJ56_06995 200728b49a9baa6f895ec65b6ab88820 74 Gene3D G3DSA:2.30.30.90 1 73 1.0E-28 T 15-10-2018 IPR038157 Ferrous iron transporter, core domain NJ56_15100 b4a6f21d0045f2f83a6d5f7f9d9d40da 508 Pfam PF06097 Bacterial protein of unknown function (DUF945) 5 478 2.1E-139 T 15-10-2018 IPR010352 Protein of unknown function DUF945 NJ56_16765 78d91a13618f0312d292884b8a68b4c7 186 SUPERFAMILY SSF159594 23 184 5.49E-27 T 15-10-2018 NJ56_16765 78d91a13618f0312d292884b8a68b4c7 186 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 25 179 7.0E-40 T 15-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component NJ56_16765 78d91a13618f0312d292884b8a68b4c7 186 Gene3D G3DSA:3.40.50.10610 13 182 1.6E-5 T 15-10-2018 NJ56_12590 f7637a8654d6c445c42fda6e9f5f3412 423 Gene3D G3DSA:3.30.160.390 1 88 2.0E-33 T 15-10-2018 IPR038488 Integrase, DNA-binding domain superfamily NJ56_12590 f7637a8654d6c445c42fda6e9f5f3412 423 SUPERFAMILY SSF56349 97 392 2.14E-46 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_12590 f7637a8654d6c445c42fda6e9f5f3412 423 Gene3D G3DSA:1.10.150.130 89 201 5.9E-28 T 15-10-2018 IPR010998 Integrase/recombinase, N-terminal NJ56_12590 f7637a8654d6c445c42fda6e9f5f3412 423 Gene3D G3DSA:1.10.443.10 206 396 9.3E-11 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_12590 f7637a8654d6c445c42fda6e9f5f3412 423 Pfam PF00589 Phage integrase family 210 383 2.4E-15 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_12590 f7637a8654d6c445c42fda6e9f5f3412 423 Pfam PF13356 Arm DNA-binding domain 5 87 2.5E-17 T 15-10-2018 IPR025166 Integrase, DNA-binding domain NJ56_03690 3c0ed49d20d125109dd83a6efa7b0951 219 Gene3D G3DSA:3.40.50.720 1 214 1.0E-49 T 15-10-2018 NJ56_03690 3c0ed49d20d125109dd83a6efa7b0951 219 SUPERFAMILY SSF51735 1 200 2.6E-34 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_03690 3c0ed49d20d125109dd83a6efa7b0951 219 SMART SM00859 3 95 0.0055 T 15-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NJ56_05775 952ef3bfc8cd81a5e9ed8f02d7c36ea8 329 Gene3D G3DSA:3.40.190.10 27 295 7.0E-139 T 15-10-2018 NJ56_05775 952ef3bfc8cd81a5e9ed8f02d7c36ea8 329 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 145 153 - T 15-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 NJ56_05775 952ef3bfc8cd81a5e9ed8f02d7c36ea8 329 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 12 326 1.0E-177 T 15-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 NJ56_05775 952ef3bfc8cd81a5e9ed8f02d7c36ea8 329 SUPERFAMILY SSF53850 21 326 1.86E-90 T 15-10-2018 NJ56_05775 952ef3bfc8cd81a5e9ed8f02d7c36ea8 329 Pfam PF13531 Bacterial extracellular solute-binding protein 32 280 6.7E-44 T 15-10-2018 NJ56_05775 952ef3bfc8cd81a5e9ed8f02d7c36ea8 329 Gene3D G3DSA:3.40.190.10 114 325 7.0E-139 T 15-10-2018 NJ56_08855 af15e6f88b1e21d81807eaa34ac27e06 373 Gene3D G3DSA:3.40.50.300 145 354 7.2E-13 T 15-10-2018 NJ56_08855 af15e6f88b1e21d81807eaa34ac27e06 373 SUPERFAMILY SSF52540 146 317 8.93E-9 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_15600 280975939aa257456efe4fff18158d20 90 Pfam PF07023 Protein of unknown function (DUF1315) 5 82 1.6E-27 T 15-10-2018 IPR009749 Protein of unknown function DUF1315 NJ56_04695 55c86fb3d51fa0ea09cd86120393dd09 196 Pfam PF04222 Protein of unknown function (DUF416) 5 193 1.5E-77 T 15-10-2018 IPR007338 Protein of unknown function DUF416 NJ56_04695 55c86fb3d51fa0ea09cd86120393dd09 196 Gene3D G3DSA:1.20.1590.10 2 195 1.4E-64 T 15-10-2018 IPR023381 YP001051499.1-like domain superfamily NJ56_12845 2a08d72907a76c839bd3c3cfde552398 132 SUPERFAMILY SSF46894 13 101 7.09E-9 T 15-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NJ56_12845 2a08d72907a76c839bd3c3cfde552398 132 Pfam PF00486 Transcriptional regulatory protein, C terminal 30 98 3.0E-6 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_12845 2a08d72907a76c839bd3c3cfde552398 132 Gene3D G3DSA:1.10.10.10 9 114 3.3E-10 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_12845 2a08d72907a76c839bd3c3cfde552398 132 SMART SM00862 29 101 0.0011 T 15-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NJ56_12060 d21c8638bee7f7c990cb4cb9049209a1 151 Pfam PF05119 Phage terminase, small subunit 41 139 2.2E-14 T 15-10-2018 IPR006448 Putative phage terminase, small subunit, P27 family NJ56_17620 47f1f211f19bafd5b929df075938f55a 400 Pfam PF00872 Transposase, Mutator family 10 373 2.3E-101 T 15-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 NJ56_07165 6d8ed34900df6e7caa6190869a3acce6 127 Pfam PF11162 Protein of unknown function (DUF2946) 1 123 1.8E-11 T 15-10-2018 IPR021333 Protein of unknown function DUF2946 NJ56_08420 80fcffacf99e8cfce7da257f9113efd9 176 Pfam PF10688 Bacterial inner membrane protein 5 161 3.1E-55 T 15-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV NJ56_08420 80fcffacf99e8cfce7da257f9113efd9 176 PIRSF PIRSF011443 1 176 2.1E-62 T 15-10-2018 IPR026267 Inner membrane protein YgjV NJ56_14150 bd3f5286b08ea5c786b5547cd7ba9bc0 263 SMART SM00346 13 102 1.4E-33 T 15-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 NJ56_14150 bd3f5286b08ea5c786b5547cd7ba9bc0 263 SUPERFAMILY SSF55781 77 259 4.51E-52 T 15-10-2018 NJ56_14150 bd3f5286b08ea5c786b5547cd7ba9bc0 263 Gene3D G3DSA:1.10.10.10 1 80 2.0E-19 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_14150 bd3f5286b08ea5c786b5547cd7ba9bc0 263 SUPERFAMILY SSF46785 13 85 2.08E-14 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_14150 bd3f5286b08ea5c786b5547cd7ba9bc0 263 Gene3D G3DSA:3.30.450.40 85 263 4.2E-65 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_14150 bd3f5286b08ea5c786b5547cd7ba9bc0 263 Pfam PF01614 Bacterial transcriptional regulator 129 254 3.8E-41 T 15-10-2018 IPR014757 Transcription regulator IclR, C-terminal NJ56_14150 bd3f5286b08ea5c786b5547cd7ba9bc0 263 Pfam PF09339 IclR helix-turn-helix domain 15 65 4.0E-13 T 15-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 NJ56_06525 c6a9dd86f0b80653c30de107f511a4bb 184 Pfam PF05068 Mannitol repressor 9 170 5.9E-59 T 15-10-2018 IPR007761 Mannitol repressor MtlR-like NJ56_06525 c6a9dd86f0b80653c30de107f511a4bb 184 Gene3D G3DSA:1.20.120.330 3 172 2.0E-58 T 15-10-2018 NJ56_06525 c6a9dd86f0b80653c30de107f511a4bb 184 SUPERFAMILY SSF158668 7 170 5.23E-55 T 15-10-2018 IPR038026 MtlR-like superfamily NJ56_17075 6baa3a7b31b7a6935ba7b7b05b127827 480 Pfam PF13460 NAD(P)H-binding 10 148 7.6E-15 T 15-10-2018 IPR016040 NAD(P)-binding domain NJ56_17075 6baa3a7b31b7a6935ba7b7b05b127827 480 Gene3D G3DSA:3.40.50.720 5 300 2.8E-34 T 15-10-2018 NJ56_17075 6baa3a7b31b7a6935ba7b7b05b127827 480 Pfam PF11066 Protein of unknown function (DUF2867) 335 463 4.9E-12 T 15-10-2018 IPR021295 Protein of unknown function DUF2867 NJ56_17075 6baa3a7b31b7a6935ba7b7b05b127827 480 SUPERFAMILY SSF51735 1 295 2.33E-46 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_03445 d0133dd274633787f1ecfce1984ed50d 218 Pfam PF14487 Domain of unknown function (DUF4433) 17 217 1.3E-51 T 15-10-2018 IPR029494 Domain of unknown function DUF4433 NJ56_09305 3fa1db814c82a118ed78998459c6879d 88 SUPERFAMILY SSF109910 2 78 1.07E-26 T 15-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily NJ56_09305 3fa1db814c82a118ed78998459c6879d 88 Pfam PF03937 Flavinator of succinate dehydrogenase 6 76 5.1E-25 T 15-10-2018 IPR005631 Flavinator of succinate dehydrogenase NJ56_09305 3fa1db814c82a118ed78998459c6879d 88 Gene3D G3DSA:1.10.150.250 1 88 4.9E-38 T 15-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily NJ56_12435 1abe0d960e38559d13f53105bc8192d9 195 Pfam PF08937 MTH538 TIR-like domain (DUF1863) 3 113 1.2E-18 T 15-10-2018 IPR015032 MTH538 TIR-like domain NJ56_12005 82deab173c3a35d1c75b65a74442dda5 333 SMART SM00507 250 299 9.0E-4 T 15-10-2018 IPR003615 HNH nuclease NJ56_12005 82deab173c3a35d1c75b65a74442dda5 333 Pfam PF06147 Protein of unknown function (DUF968) 130 330 6.0E-74 T 15-10-2018 IPR010373 Protein of unknown function DUF968 NJ56_06025 882bc0ead96672ce9a1bdcbf1aa75902 563 Pfam PF05170 AsmA family 255 546 3.0E-8 T 15-10-2018 IPR007844 AsmA NJ56_09985 59e1df21b94524ec8c65d319cc501159 149 ProDom PD093913 YICN MEMBRANE INNER EXPORTED 1 149 8.0E-60 T 15-10-2018 IPR009587 Protein of unknown function DUF1198 NJ56_09985 59e1df21b94524ec8c65d319cc501159 149 Pfam PF06711 Protein of unknown function (DUF1198) 1 143 8.3E-64 T 15-10-2018 IPR009587 Protein of unknown function DUF1198 NJ56_11540 3c2e8413a50c52c8cd77660dfe4f15fd 169 Pfam PF02674 Colicin V production protein 4 142 3.0E-36 T 15-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 NJ56_03980 b9004b7e30127a61516b97d0165eea60 248 Pfam PF08525 Opacity-associated protein A N-terminal motif 94 121 3.3E-10 T 15-10-2018 IPR013731 Opacity-associated protein A, N-terminal NJ56_03980 b9004b7e30127a61516b97d0165eea60 248 Pfam PF04225 Opacity-associated protein A LysM-like domain 163 247 4.7E-37 T 15-10-2018 IPR007340 Opacity-associated protein A NJ56_03980 b9004b7e30127a61516b97d0165eea60 248 Gene3D G3DSA:3.10.450.350 154 246 3.7E-13 T 15-10-2018 NJ56_12855 0af194f20ddbe3199188c7a23ba7ad8f 169 Gene3D G3DSA:2.60.40.1090 18 168 1.1E-26 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_12855 0af194f20ddbe3199188c7a23ba7ad8f 169 Pfam PF00419 Fimbrial protein 21 168 3.6E-10 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_12855 0af194f20ddbe3199188c7a23ba7ad8f 169 SUPERFAMILY SSF49401 19 169 3.78E-29 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_05880 7f40c46de4d99e3d97b4568db9fa3df5 253 Pfam PF00535 Glycosyl transferase family 2 8 132 2.0E-19 T 15-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 NJ56_05880 7f40c46de4d99e3d97b4568db9fa3df5 253 SUPERFAMILY SSF53448 3 151 2.44E-28 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_05880 7f40c46de4d99e3d97b4568db9fa3df5 253 Gene3D G3DSA:3.90.550.10 1 221 1.0E-28 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_03170 65596c17b92eefb896e6f26892b20645 204 SMART SM00749 62 125 1.4E-9 T 15-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria NJ56_03170 65596c17b92eefb896e6f26892b20645 204 SMART SM00749 141 204 6.3E-11 T 15-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria NJ56_03170 65596c17b92eefb896e6f26892b20645 204 Pfam PF04972 BON domain 58 124 5.3E-18 T 15-10-2018 IPR007055 BON domain NJ56_03170 65596c17b92eefb896e6f26892b20645 204 Pfam PF04972 BON domain 137 204 5.6E-19 T 15-10-2018 IPR007055 BON domain NJ56_13525 7ae64a9aa3d35a1f6857bd5c0682e2ff 565 Pfam PF13250 Domain of unknown function (DUF4041) 274 329 1.6E-13 T 15-10-2018 IPR025280 Domain of unknown function DUF4041 NJ56_13525 7ae64a9aa3d35a1f6857bd5c0682e2ff 565 Pfam PF13455 Meiotically up-regulated gene 113 450 524 2.7E-13 T 15-10-2018 NJ56_13525 7ae64a9aa3d35a1f6857bd5c0682e2ff 565 SMART SM00974 444 527 2.6E-33 T 15-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding NJ56_11240 5d1156ab74d5b444345fa5a587c22b3f 394 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 82 2.0E-16 T 15-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 NJ56_11240 5d1156ab74d5b444345fa5a587c22b3f 394 Pfam PF07670 Nucleoside recognition 92 190 1.3E-7 T 15-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 NJ56_11240 5d1156ab74d5b444345fa5a587c22b3f 394 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 392 2.4E-59 T 15-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 NJ56_17305 a69d34371c482d980e0fc4fd3d16c965 193 Pfam PF00692 dUTPase 79 185 5.1E-9 T 15-10-2018 IPR029054 dUTPase-like NJ56_17305 a69d34371c482d980e0fc4fd3d16c965 193 Hamap MF_00146 dCTP deaminase [dcd]. 1 190 34.536 T 15-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 NJ56_17305 a69d34371c482d980e0fc4fd3d16c965 193 Gene3D G3DSA:2.70.40.10 1 193 4.6E-53 T 15-10-2018 IPR036157 dUTPase-like superfamily NJ56_17305 a69d34371c482d980e0fc4fd3d16c965 193 SUPERFAMILY SSF51283 1 193 2.09E-60 T 15-10-2018 IPR036157 dUTPase-like superfamily NJ56_17305 a69d34371c482d980e0fc4fd3d16c965 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 6.2E-69 T 15-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 NJ56_12170 739117b94e4087289da13a9f57f94dea 115 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 20 115 3.0E-16 T 15-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly NJ56_13920 a9060e74219806ced4979b9fec25dc58 154 Gene3D G3DSA:1.10.490.10 4 128 2.4E-25 T 15-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 NJ56_13920 a9060e74219806ced4979b9fec25dc58 154 Pfam PF01152 Bacterial-like globin 7 103 2.3E-10 T 15-10-2018 IPR001486 Truncated hemoglobin GO:0019825 NJ56_13920 a9060e74219806ced4979b9fec25dc58 154 SUPERFAMILY SSF46458 6 119 6.78E-21 T 15-10-2018 IPR009050 Globin-like superfamily NJ56_13125 2c2f07556b725d5bcce7ef5423243d07 169 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 91 167 1.9E-7 T 15-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 NJ56_13125 2c2f07556b725d5bcce7ef5423243d07 169 TIGRFAM TIGR03823 FliZ: flagellar regulatory protein FliZ 1 168 7.3E-97 T 15-10-2018 IPR022523 Flagellar regulator, FliZ NJ56_07110 07b4751dcd69d185e0e5dc594ebe851c 326 Gene3D G3DSA:3.30.70.1070 221 325 1.4E-32 T 15-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 NJ56_07110 07b4751dcd69d185e0e5dc594ebe851c 326 Hamap MF_02021 Cell division protein DamX [damX]. 1 326 25.624 T 15-10-2018 IPR032899 Cell division protein DamX GO:0030428|GO:0032506 NJ56_07110 07b4751dcd69d185e0e5dc594ebe851c 326 SUPERFAMILY SSF110997 242 305 5.1E-5 T 15-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 NJ56_07110 07b4751dcd69d185e0e5dc594ebe851c 326 Pfam PF05036 Sporulation related domain 242 315 8.6E-10 T 15-10-2018 IPR007730 Sporulation-like domain GO:0042834 NJ56_08830 4adc7f7bf80290539bdc50e54cfa4d99 163 Pfam PF07811 TadE-like protein 14 55 4.2E-6 T 15-10-2018 IPR012495 TadE-like NJ56_10765 36556993258a0aa61b66ecf9826abb16 350 Gene3D G3DSA:2.60.40.3310 65 185 2.7E-5 T 15-10-2018 NJ56_10765 36556993258a0aa61b66ecf9826abb16 350 SUPERFAMILY SSF49401 208 350 5.47E-19 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_10765 36556993258a0aa61b66ecf9826abb16 350 Pfam PF00419 Fimbrial protein 199 350 7.4E-15 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_10765 36556993258a0aa61b66ecf9826abb16 350 Gene3D G3DSA:2.60.40.1090 207 350 3.6E-23 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_02830 2f63637ecd97719326699f6121357b74 58 Pfam PF15894 Inhibitor of glucose uptake transporter SgrT 7 55 1.7E-22 T 15-10-2018 IPR031767 Inhibitor of glucose uptake transporter SgrT GO:0046325 NJ56_09270 6d49115c2c54eebd4b9f72045dd2dd31 404 Gene3D G3DSA:3.50.50.60 260 404 6.6E-50 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_09270 6d49115c2c54eebd4b9f72045dd2dd31 404 Gene3D G3DSA:3.50.50.60 1 227 3.7E-84 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_09270 6d49115c2c54eebd4b9f72045dd2dd31 404 SUPERFAMILY SSF51905 4 388 2.2E-61 T 15-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily NJ56_09270 6d49115c2c54eebd4b9f72045dd2dd31 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 299 4.1E-19 T 15-10-2018 NJ56_09270 6d49115c2c54eebd4b9f72045dd2dd31 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 315 4.1E-19 T 15-10-2018 NJ56_09270 6d49115c2c54eebd4b9f72045dd2dd31 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 4.1E-19 T 15-10-2018 NJ56_09270 6d49115c2c54eebd4b9f72045dd2dd31 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 4.1E-19 T 15-10-2018 NJ56_09270 6d49115c2c54eebd4b9f72045dd2dd31 404 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 298 311 - T 15-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 NJ56_09270 6d49115c2c54eebd4b9f72045dd2dd31 404 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 394 5.7E-137 T 15-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 NJ56_09270 6d49115c2c54eebd4b9f72045dd2dd31 404 Pfam PF01494 FAD binding domain 4 349 2.2E-28 T 15-10-2018 IPR002938 FAD-binding domain GO:0071949 NJ56_12910 b892f6772556ab788898df8cf538398e 692 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 15-10-2018 IPR025505 FHIPEP conserved site NJ56_12910 b892f6772556ab788898df8cf538398e 692 Pfam PF00771 FHIPEP family 31 681 2.3E-266 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_12910 b892f6772556ab788898df8cf538398e 692 Gene3D G3DSA:3.40.30.60 361 504 1.5E-50 T 15-10-2018 NJ56_12910 b892f6772556ab788898df8cf538398e 692 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 689 1.2E-277 T 15-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 NJ56_12910 b892f6772556ab788898df8cf538398e 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 1.5E-56 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_12910 b892f6772556ab788898df8cf538398e 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 1.5E-56 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_12910 b892f6772556ab788898df8cf538398e 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 1.5E-56 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_12910 b892f6772556ab788898df8cf538398e 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 1.5E-56 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_12910 b892f6772556ab788898df8cf538398e 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 1.5E-56 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_12910 b892f6772556ab788898df8cf538398e 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 1.5E-56 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_12910 b892f6772556ab788898df8cf538398e 692 Gene3D G3DSA:1.10.8.540 505 593 4.3E-29 T 15-10-2018 NJ56_12910 b892f6772556ab788898df8cf538398e 692 PIRSF PIRSF005419 14 692 1.0E-239 T 15-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NJ56_12910 b892f6772556ab788898df8cf538398e 692 Gene3D G3DSA:1.10.490.80 596 689 7.0E-8 T 15-10-2018 NJ56_00180 411b6284a425fb5acd16f117305ebe7a 272 Pfam PF02517 CAAX protease self-immunity 173 259 6.9E-19 T 15-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 NJ56_10800 007c479bf8080c2a470c099331f94d89 519 SUPERFAMILY SSF53067 138 311 4.53E-48 T 15-10-2018 NJ56_10800 007c479bf8080c2a470c099331f94d89 519 SUPERFAMILY SSF109604 314 508 5.57E-57 T 15-10-2018 NJ56_10800 007c479bf8080c2a470c099331f94d89 519 Gene3D G3DSA:3.30.420.40 15 304 7.3E-98 T 15-10-2018 NJ56_10800 007c479bf8080c2a470c099331f94d89 519 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 13 307 4.6E-100 T 15-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 NJ56_10800 007c479bf8080c2a470c099331f94d89 519 SUPERFAMILY SSF53067 14 134 7.34E-37 T 15-10-2018 NJ56_10800 007c479bf8080c2a470c099331f94d89 519 Gene3D G3DSA:1.10.3210.10 311 516 1.1E-81 T 15-10-2018 NJ56_10800 007c479bf8080c2a470c099331f94d89 519 PIRSF PIRSF001267 4 507 4.6E-204 T 15-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 NJ56_10800 007c479bf8080c2a470c099331f94d89 519 Gene3D G3DSA:3.30.420.150 118 296 7.3E-98 T 15-10-2018 NJ56_10800 007c479bf8080c2a470c099331f94d89 519 Pfam PF02541 Ppx/GppA phosphatase family 27 309 2.9E-98 T 15-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 NJ56_16870 4c9a39169b699c0143a6488d82f49d98 297 Gene3D G3DSA:3.90.1200.10 105 288 2.9E-8 T 15-10-2018 NJ56_16870 4c9a39169b699c0143a6488d82f49d98 297 Pfam PF01636 Phosphotransferase enzyme family 61 240 2.2E-6 T 15-10-2018 IPR002575 Aminoglycoside phosphotransferase NJ56_16870 4c9a39169b699c0143a6488d82f49d98 297 SUPERFAMILY SSF56112 14 268 1.33E-18 T 15-10-2018 IPR011009 Protein kinase-like domain superfamily NJ56_12860 66922a09fbfcfe64c89501c6612283ef 161 Gene3D G3DSA:2.60.40.1090 38 161 5.0E-30 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_12860 66922a09fbfcfe64c89501c6612283ef 161 SUPERFAMILY SSF49401 36 161 1.29E-18 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_12860 66922a09fbfcfe64c89501c6612283ef 161 Pfam PF00419 Fimbrial protein 28 161 1.7E-13 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_11995 db6fbad74730bfeb4dd3cd4c71f68879 232 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 16 96 2.4E-16 T 15-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family NJ56_11995 db6fbad74730bfeb4dd3cd4c71f68879 232 Pfam PF03374 Phage antirepressor protein KilAC domain 125 224 8.0E-28 T 15-10-2018 IPR005039 Antirepressor protein, C-terminal GO:0003677 NJ56_14070 4d2f9c43845319bbe981cc12835e20e8 59 Pfam PF10753 Toxin GhoT_OrtT 5 59 1.6E-22 T 15-10-2018 IPR019689 Toxin GhoT/OrtT NJ56_12740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 Gene3D G3DSA:2.40.50.140 2 70 6.4E-31 T 15-10-2018 NJ56_12740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PIRSF PIRSF002599 1 70 1.4E-26 T 15-10-2018 IPR012156 Cold shock, CspA GO:0003676 NJ56_12740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 43 61 1.9E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_12740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 7 22 1.9E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_12740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 28 37 1.9E-17 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_12740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 SUPERFAMILY SSF50249 2 69 1.43E-25 T 15-10-2018 IPR012340 Nucleic acid-binding, OB-fold NJ56_12740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 SMART SM00357 6 70 1.1E-30 T 15-10-2018 IPR011129 Cold shock domain GO:0003676 NJ56_12740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 15-10-2018 IPR019844 Cold-shock conserved site NJ56_12740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 3.4E-33 T 15-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NJ56_10575 ef96e6f8004a003db714386f0475b756 295 Pfam PF14581 SseB protein C-terminal domain 169 279 1.4E-33 T 15-10-2018 IPR027945 SseB protein, C-terminal NJ56_10575 ef96e6f8004a003db714386f0475b756 295 Pfam PF07179 SseB protein N-terminal domain 30 153 2.2E-26 T 15-10-2018 IPR009839 SseB protein N-terminal domain NJ56_02680 43018cd80c8399667948b3e7c5cdcd50 176 Pfam PF05258 Protein of unknown function (DUF721) 28 100 4.2E-14 T 15-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 NJ56_05760 fc12de7963cb2f92013767f57e7813d0 144 Pfam PF05656 Protein of unknown function (DUF805) 7 133 1.4E-21 T 15-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 NJ56_04960 75831287fab3e0d32278aff30d9276d0 260 SUPERFAMILY SSF52799 12 259 8.52E-52 T 15-10-2018 IPR029021 Protein-tyrosine phosphatase-like NJ56_04960 75831287fab3e0d32278aff30d9276d0 260 Pfam PF13350 Tyrosine phosphatase family 13 260 9.4E-62 T 15-10-2018 IPR026893 Tyrosine/serine-protein phosphatase IphP-type NJ56_04960 75831287fab3e0d32278aff30d9276d0 260 Gene3D G3DSA:3.90.190.10 13 259 3.8E-56 T 15-10-2018 IPR029021 Protein-tyrosine phosphatase-like NJ56_08150 c5d7b92a26c6debe9a268490f03d8178 160 Gene3D G3DSA:3.40.930.10 1 158 1.9E-62 T 15-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 NJ56_08150 c5d7b92a26c6debe9a268490f03d8178 160 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 8 154 1.3E-60 T 15-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 NJ56_08150 c5d7b92a26c6debe9a268490f03d8178 160 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 57 73 - T 15-10-2018 IPR002178 PTS EIIA type-2 domain NJ56_08150 c5d7b92a26c6debe9a268490f03d8178 160 SUPERFAMILY SSF55804 7 154 4.45E-42 T 15-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 NJ56_08150 c5d7b92a26c6debe9a268490f03d8178 160 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 12 154 9.7E-37 T 15-10-2018 IPR002178 PTS EIIA type-2 domain NJ56_12890 c799f782ca99ebde517178fc95db1d2c 590 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 396 584 1.0E-15 T 15-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal NJ56_12890 c799f782ca99ebde517178fc95db1d2c 590 Pfam PF15864 Protein glycosylation ligase 172 197 3.9E-7 T 15-10-2018 IPR031726 Protein glycosylation ligase domain NJ56_12890 c799f782ca99ebde517178fc95db1d2c 590 Pfam PF04932 O-Antigen ligase 220 361 4.3E-17 T 15-10-2018 IPR007016 O-antigen ligase-related NJ56_00160 8a1482218399f988f6937b617587ff53 231 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 13 220 6.9E-75 T 15-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 NJ56_00160 8a1482218399f988f6937b617587ff53 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 220 2.3E-23 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_00160 8a1482218399f988f6937b617587ff53 231 SUPERFAMILY SSF161098 5 219 1.57E-50 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_00160 8a1482218399f988f6937b617587ff53 231 Gene3D G3DSA:1.10.3720.10 2 225 4.8E-63 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_11670 f1145a24499c55ab1dcad3dc82b19249 150 Gene3D G3DSA:1.20.58.1610 1 124 1.5E-42 T 15-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11670 f1145a24499c55ab1dcad3dc82b19249 150 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 27 123 1.5E-31 T 15-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11670 f1145a24499c55ab1dcad3dc82b19249 150 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 7 124 19.881 T 15-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 NJ56_18145 344467841a68ed7ef6b7ffb5a2b1ed76 108 Pfam PF05513 TraA 18 106 1.4E-19 T 15-10-2018 IPR008873 TraA GO:0000746|GO:0005576 NJ56_18145 344467841a68ed7ef6b7ffb5a2b1ed76 108 TIGRFAM TIGR02758 TraA_TIGR: type IV conjugative transfer system pilin TraA 15 107 4.3E-23 T 15-10-2018 IPR008873 TraA GO:0000746|GO:0005576 NJ56_10235 ae8749577502059ef927608c295be880 81 Pfam PF04606 Ogr/Delta-like zinc finger 3 49 1.9E-19 T 15-10-2018 IPR007684 Zinc finger, Ogr/Delta-type NJ56_18185 655036fcf2e807c75a370206165754bf 209 TIGRFAM TIGR02743 TraW: type-F conjugative transfer system protein TraW 4 202 7.9E-69 T 15-10-2018 IPR014114 Type-F conjugative transfer system protein TraW NJ56_18185 655036fcf2e807c75a370206165754bf 209 Pfam PF12477 Sex factor F TraW protein N terminal 5 30 1.0E-6 T 15-10-2018 IPR025864 Type-F conjugative transfer system protein TraW N-terminal domain NJ56_14805 62b9350f35b6e16decc2f19299ccf4f3 90 Pfam PF03891 Domain of unknown function (DUF333) 39 86 2.9E-26 T 15-10-2018 IPR005590 Protein of unknown function DUF333 NJ56_03260 63dc85e9d861aaf09e2699b4921b0545 411 Pfam PF04932 O-Antigen ligase 197 341 2.3E-15 T 15-10-2018 IPR007016 O-antigen ligase-related NJ56_10345 1719179b992be55e3d2944f8f27bad81 153 PIRSF PIRSF004923 1 151 4.6E-36 T 15-10-2018 IPR026268 Protein RseC NJ56_10345 1719179b992be55e3d2944f8f27bad81 153 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 139 1.7E-33 T 15-10-2018 NJ56_02615 196b38d0be5f157263cf5b7630e8b8f0 284 Pfam PF17113 Regulatory signalling modulator protein AmpE 1 284 8.9E-160 T 15-10-2018 IPR031347 Protein AmpE NJ56_17385 2e660211f076473c7accbd8912672d2f 388 Pfam PF04235 Protein of unknown function (DUF418) 216 374 1.1E-47 T 15-10-2018 IPR007349 Domain of unknown function DUF418 NJ56_14740 cf0192cf24f537714b1a476baa065848 352 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 4 348 39.146 T 15-10-2018 IPR006507 Uncharacterised protein family UPF0283 NJ56_14740 cf0192cf24f537714b1a476baa065848 352 Pfam PF05128 Domain of unknown function (DUF697) 183 342 2.2E-56 T 15-10-2018 IPR021147 Protein of unknown function DUF697 NJ56_14740 cf0192cf24f537714b1a476baa065848 352 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 57 342 6.7E-136 T 15-10-2018 IPR006507 Uncharacterised protein family UPF0283 NJ56_15705 bdce106c1b340bbe57839a9824918b5e 176 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 167 22.936 T 15-10-2018 IPR022920 Disulphide bond formation protein DsbB NJ56_15705 bdce106c1b340bbe57839a9824918b5e 176 Pfam PF02600 Disulfide bond formation protein DsbB 12 159 1.4E-46 T 15-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 NJ56_15705 bdce106c1b340bbe57839a9824918b5e 176 SUPERFAMILY SSF158442 15 161 1.03E-47 T 15-10-2018 IPR023380 DsbB-like superfamily NJ56_15705 bdce106c1b340bbe57839a9824918b5e 176 Gene3D G3DSA:1.20.1550.10 1 176 2.2E-70 T 15-10-2018 IPR023380 DsbB-like superfamily NJ56_01890 71834bc64c727e6d92eedd5d01305628 238 Pfam PF04397 LytTr DNA-binding domain 143 235 1.5E-24 T 15-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 NJ56_01890 71834bc64c727e6d92eedd5d01305628 238 Pfam PF00072 Response regulator receiver domain 5 112 6.5E-25 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_01890 71834bc64c727e6d92eedd5d01305628 238 SUPERFAMILY SSF52172 1 127 1.35E-31 T 15-10-2018 IPR011006 CheY-like superfamily NJ56_01890 71834bc64c727e6d92eedd5d01305628 238 Gene3D G3DSA:2.40.50.1020 132 237 4.8E-12 T 15-10-2018 NJ56_01890 71834bc64c727e6d92eedd5d01305628 238 Gene3D G3DSA:3.40.50.2300 1 128 3.2E-31 T 15-10-2018 NJ56_01890 71834bc64c727e6d92eedd5d01305628 238 SMART SM00448 2 112 9.9E-29 T 15-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 NJ56_01890 71834bc64c727e6d92eedd5d01305628 238 SMART SM00850 142 236 2.6E-25 T 15-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 NJ56_05120 fca70c24504e7f8bab0f41abdce64ee6 90 Pfam PF06611 Protein of unknown function (DUF1145) 1 58 8.6E-27 T 15-10-2018 IPR009525 Protein of unknown function DUF1145 NJ56_17740 524e6a0c4b99947d32242ef32e9aa71b 262 Pfam PF06586 TraK protein 9 254 2.0E-26 T 15-10-2018 IPR010563 Pilus assembly TraK NJ56_14810 4fbe943cb319b1fc3370c8c0aa4d6d21 145 Gene3D G3DSA:2.40.128.270 38 140 4.7E-33 T 15-10-2018 IPR038670 HslJ-like superfamily NJ56_14810 4fbe943cb319b1fc3370c8c0aa4d6d21 145 Pfam PF03724 META domain 32 137 2.7E-18 T 15-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ NJ56_11740 f2e52a185508154bc6c68578f4150bda 103 Pfam PF05957 Bacterial protein of unknown function (DUF883) 11 103 3.3E-28 T 15-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 NJ56_01140 824c8726a8611499409d2e5bdfeb0543 292 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 218 9.4E-30 T 15-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 NJ56_01140 824c8726a8611499409d2e5bdfeb0543 292 SUPERFAMILY SSF51735 1 288 3.36E-46 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_01140 824c8726a8611499409d2e5bdfeb0543 292 Gene3D G3DSA:3.90.25.10 168 287 1.3E-46 T 15-10-2018 NJ56_01140 824c8726a8611499409d2e5bdfeb0543 292 Gene3D G3DSA:3.40.50.720 3 280 1.3E-46 T 15-10-2018 NJ56_08620 395ca6e483d3cb1cc50f3650db17dd3d 129 Pfam PF13396 Phospholipase_D-nuclease N-terminal 23 67 2.4E-6 T 15-10-2018 IPR027379 Cardiolipin synthase N-terminal NJ56_17535 a17a9f11ec0e1cdfd888239d426675ec 384 PRINTS PR00173 Glutamate-aspartate symporter signature 222 241 7.2E-5 T 15-10-2018 NJ56_17535 a17a9f11ec0e1cdfd888239d426675ec 384 PRINTS PR00173 Glutamate-aspartate symporter signature 319 338 7.2E-5 T 15-10-2018 NJ56_17535 a17a9f11ec0e1cdfd888239d426675ec 384 PRINTS PR00173 Glutamate-aspartate symporter signature 47 67 7.2E-5 T 15-10-2018 NJ56_17535 a17a9f11ec0e1cdfd888239d426675ec 384 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 7.2E-5 T 15-10-2018 NJ56_17535 a17a9f11ec0e1cdfd888239d426675ec 384 SUPERFAMILY SSF161098 173 371 1.44E-34 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17535 a17a9f11ec0e1cdfd888239d426675ec 384 Gene3D G3DSA:1.10.3720.10 168 380 6.2E-33 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_17535 a17a9f11ec0e1cdfd888239d426675ec 384 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 195 380 3.1E-20 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_17800 b3db95e5e8b93f9fcabc3134a3a60dd8 463 Gene3D G3DSA:1.10.10.2830 119 232 3.1E-5 T 15-10-2018 NJ56_17800 b3db95e5e8b93f9fcabc3134a3a60dd8 463 Pfam PF08535 KorB domain 157 225 1.3E-9 T 15-10-2018 IPR013741 Repressor KorB domain NJ56_17800 b3db95e5e8b93f9fcabc3134a3a60dd8 463 SUPERFAMILY SSF109709 126 236 4.19E-11 T 15-10-2018 NJ56_11350 afc36abb4decb1d0873430ce26b1d3ad 164 SUPERFAMILY SSF82093 30 143 3.53E-40 T 15-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 NJ56_11350 afc36abb4decb1d0873430ce26b1d3ad 164 Gene3D G3DSA:2.40.50.140 30 143 3.0E-43 T 15-10-2018 NJ56_11350 afc36abb4decb1d0873430ce26b1d3ad 164 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 147 32.319 T 15-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 NJ56_11350 afc36abb4decb1d0873430ce26b1d3ad 164 Pfam PF03100 CcmE 4 137 1.0E-44 T 15-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 NJ56_16700 6cec0abf5df399b80461f824ec250f00 137 Gene3D G3DSA:3.40.50.720 1 137 1.7E-41 T 15-10-2018 NJ56_16700 6cec0abf5df399b80461f824ec250f00 137 SUPERFAMILY SSF51735 2 135 5.19E-43 T 15-10-2018 IPR036291 NAD(P)-binding domain superfamily NJ56_16700 6cec0abf5df399b80461f824ec250f00 137 SMART SM00881 9 104 1.2E-23 T 15-10-2018 IPR003781 CoA-binding GO:0048037 NJ56_16700 6cec0abf5df399b80461f824ec250f00 137 Pfam PF13380 CoA binding domain 14 130 5.2E-37 T 15-10-2018 IPR003781 CoA-binding GO:0048037 NJ56_16645 d970cfc60d3fd6db86b265d9afbd0426 852 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 77 756 51.748 T 15-10-2018 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 NJ56_16645 d970cfc60d3fd6db86b265d9afbd0426 852 Gene3D G3DSA:3.90.550.10 249 479 2.9E-13 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_16645 d970cfc60d3fd6db86b265d9afbd0426 852 Pfam PF00535 Glycosyl transferase family 2 257 439 4.4E-22 T 15-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 NJ56_16645 d970cfc60d3fd6db86b265d9afbd0426 852 SUPERFAMILY SSF53448 253 541 3.84E-27 T 15-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases NJ56_16705 4eeee21f3610e6d87c587cefdd6dce2a 229 Hamap MF_00789 UPF0319 protein YccT [yccT]. 4 225 24.475 T 15-10-2018 IPR018635 Uncharacterised protein family UPF0319 NJ56_16705 4eeee21f3610e6d87c587cefdd6dce2a 229 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 23 222 2.6E-48 T 15-10-2018 IPR018635 Uncharacterised protein family UPF0319 NJ56_14935 5aadf98b1c5b287efdc9f40f3e9fb185 159 Gene3D G3DSA:3.40.930.10 3 158 2.3E-47 T 15-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 NJ56_14935 5aadf98b1c5b287efdc9f40f3e9fb185 159 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 10 154 2.1E-32 T 15-10-2018 IPR002178 PTS EIIA type-2 domain NJ56_14935 5aadf98b1c5b287efdc9f40f3e9fb185 159 SUPERFAMILY SSF55804 9 154 6.93E-32 T 15-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 NJ56_08125 259f5e3ff732d20b7d258b00d2104933 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 126 8.5E-53 T 15-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 NJ56_08125 259f5e3ff732d20b7d258b00d2104933 128 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 103 121 - T 15-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 NJ56_08125 259f5e3ff732d20b7d258b00d2104933 128 SUPERFAMILY SSF55298 4 127 1.15E-42 T 15-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 NJ56_08125 259f5e3ff732d20b7d258b00d2104933 128 Gene3D G3DSA:3.30.1330.40 1 128 3.3E-47 T 15-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 NJ56_08125 259f5e3ff732d20b7d258b00d2104933 128 Pfam PF01042 Endoribonuclease L-PSP 8 126 2.0E-43 T 15-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 NJ56_04400 166daa375462d28dbe94125ec809179c 152 ProDom PD012854 PLASMID KLCA ANTIRESTRICTION YFJX YCIB ARDB STABLE YFEB Z1216 C0275 62 152 4.0E-16 T 15-10-2018 IPR004914 Antirestriction protein NJ56_04400 166daa375462d28dbe94125ec809179c 152 Gene3D G3DSA:1.10.472.120 23 152 2.4E-31 T 15-10-2018 NJ56_04400 166daa375462d28dbe94125ec809179c 152 Pfam PF03230 Antirestriction protein 62 152 1.2E-29 T 15-10-2018 IPR004914 Antirestriction protein NJ56_10470 61d726579860aae9f57fa95559d77e69 295 SUPERFAMILY SSF51556 5 291 2.08E-93 T 15-10-2018 IPR032466 Metal-dependent hydrolase NJ56_10470 61d726579860aae9f57fa95559d77e69 295 Gene3D G3DSA:3.20.20.140 3 291 6.5E-101 T 15-10-2018 NJ56_10470 61d726579860aae9f57fa95559d77e69 295 PIRSF PIRSF016839 1 295 1.5E-118 T 15-10-2018 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 NJ56_10470 61d726579860aae9f57fa95559d77e69 295 Pfam PF02126 Phosphotriesterase family 4 290 6.6E-100 T 15-10-2018 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 NJ56_00510 67d20034bba9c7d8cab77d2a8c9c0a6c 108 Pfam PF13982 YbfN-like lipoprotein 22 108 2.7E-43 T 15-10-2018 IPR025727 YbfN-like lipoprotein NJ56_06085 57878a51216b54864d0eef2d7b3f7edc 178 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 172 17.193 T 15-10-2018 IPR007336 Der GTPase activator GO:0005096 NJ56_06085 57878a51216b54864d0eef2d7b3f7edc 178 Pfam PF04220 Der GTPase activator (YihI) 14 169 2.9E-55 T 15-10-2018 IPR007336 Der GTPase activator GO:0005096 NJ56_16100 0a84158c27eca54d330b5013486b170b 114 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 114 20.343 T 15-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 NJ56_16100 0a84158c27eca54d330b5013486b170b 114 PIRSF PIRSF004761 1 114 7.4E-34 T 15-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 NJ56_16100 0a84158c27eca54d330b5013486b170b 114 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 113 2.8E-29 T 15-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 NJ56_16100 0a84158c27eca54d330b5013486b170b 114 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 15-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site NJ56_16100 0a84158c27eca54d330b5013486b170b 114 Gene3D G3DSA:3.30.2320.80 1 114 3.0E-26 T 15-10-2018 NJ56_16100 0a84158c27eca54d330b5013486b170b 114 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 114 2.7E-37 T 15-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 NJ56_13815 d6b7637cb6dba108245576fb6c54ef59 75 Pfam PF13996 YobH-like protein 1 69 3.3E-35 T 15-10-2018 IPR025611 YobH-like protein NJ56_11610 c1d41539c66b16d6640a9bea2c7d2ed1 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 145 9.7E-37 T 15-10-2018 IPR002178 PTS EIIA type-2 domain NJ56_11610 c1d41539c66b16d6640a9bea2c7d2ed1 147 SUPERFAMILY SSF55804 1 145 1.96E-40 T 15-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 NJ56_11610 c1d41539c66b16d6640a9bea2c7d2ed1 147 Gene3D G3DSA:3.40.930.10 1 147 6.7E-59 T 15-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 NJ56_06110 056ea9af0ed4c25d22b6033f98a4edda 90 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 8.0E-43 T 15-10-2018 IPR009383 Protein of unknown function DUF1040 NJ56_06110 056ea9af0ed4c25d22b6033f98a4edda 90 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 4.1E-46 T 15-10-2018 IPR009383 Protein of unknown function DUF1040 NJ56_06110 056ea9af0ed4c25d22b6033f98a4edda 90 Gene3D G3DSA:1.10.1580.20 1 89 5.2E-46 T 15-10-2018 IPR038134 YihD-like superfamily NJ56_14075 00ac1d2c3ab1f602baa0a341df2ed94d 223 SUPERFAMILY SSF52964 46 143 1.57E-8 T 15-10-2018 NJ56_14075 00ac1d2c3ab1f602baa0a341df2ed94d 223 Pfam PF03783 Curli production assembly/transport component CsgG 40 220 2.3E-31 T 15-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 NJ56_14075 00ac1d2c3ab1f602baa0a341df2ed94d 223 Gene3D G3DSA:3.40.50.10610 50 223 5.3E-6 T 15-10-2018 NJ56_02845 41cb4e81a9cacf58049b11f5ba6979fa 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 250 7.8E-10 T 15-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 NJ56_02845 41cb4e81a9cacf58049b11f5ba6979fa 535 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 8 525 2.3E-240 T 15-10-2018 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 NJ56_02845 41cb4e81a9cacf58049b11f5ba6979fa 535 SUPERFAMILY SSF161098 286 527 4.58E-30 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_02845 41cb4e81a9cacf58049b11f5ba6979fa 535 SUPERFAMILY SSF161098 11 264 7.38E-43 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_02845 41cb4e81a9cacf58049b11f5ba6979fa 535 Gene3D G3DSA:1.10.3720.10 11 267 8.8E-44 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_02845 41cb4e81a9cacf58049b11f5ba6979fa 535 Gene3D G3DSA:1.10.3720.10 291 534 2.2E-26 T 15-10-2018 IPR035906 MetI-like superfamily NJ56_13930 1ff998733dcab6c2802b60b800ccb131 189 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 184 26.166 T 15-10-2018 IPR022929 Putative manganese efflux pump MntP NJ56_13930 1ff998733dcab6c2802b60b800ccb131 189 Pfam PF02659 Putative manganese efflux pump 31 181 1.4E-55 T 15-10-2018 IPR003810 Putative manganese efflux pump NJ56_14430 8d1539648056f0c257777702532672fb 367 Pfam PF01594 AI-2E family transporter 17 346 2.5E-51 T 15-10-2018 IPR002549 Transmembrane protein TqsA-like NJ56_10945 8b5387dd73752f9f5d8ede9b69b69126 157 Pfam PF12688 Tetratrico peptide repeat 37 153 8.2E-12 T 15-10-2018 NJ56_10945 8b5387dd73752f9f5d8ede9b69b69126 157 Gene3D G3DSA:1.25.40.10 46 151 3.6E-19 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_10945 8b5387dd73752f9f5d8ede9b69b69126 157 SUPERFAMILY SSF48452 8 149 3.8E-16 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_03595 6d800a7a96767230ccc7bba47fbca986 356 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 354 3.0E-143 T 15-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 NJ56_03595 6d800a7a96767230ccc7bba47fbca986 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 354 1.0E-75 T 15-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 NJ56_12075 0580d3416b8ad6bbedbb7ad38cc75d94 199 TIGRFAM TIGR01543 proheadase_HK97: phage prohead protease, HK97 family 25 162 1.1E-25 T 15-10-2018 IPR006433 Prohead protease NJ56_12075 0580d3416b8ad6bbedbb7ad38cc75d94 199 Pfam PF04586 Caudovirus prohead serine protease 13 172 9.2E-45 T 15-10-2018 IPR006433 Prohead protease NJ56_05550 22fc5ef1e0cc084e1e7bcbbb0aa3947a 123 Pfam PF07226 Protein of unknown function (DUF1422) 2 114 5.3E-52 T 15-10-2018 IPR009867 Protein of unknown function DUF1422 NJ56_05550 22fc5ef1e0cc084e1e7bcbbb0aa3947a 123 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 2 110 1.0E-35 T 15-10-2018 IPR009867 Protein of unknown function DUF1422 NJ56_05055 b962d60d17f234b6d1165d1f907faaef 255 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 15-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NJ56_05055 b962d60d17f234b6d1165d1f907faaef 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 234 254 1.1E-9 T 15-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal NJ56_05055 b962d60d17f234b6d1165d1f907faaef 255 Gene3D G3DSA:3.40.50.300 5 253 1.8E-60 T 15-10-2018 NJ56_05055 b962d60d17f234b6d1165d1f907faaef 255 Pfam PF00005 ABC transporter 23 182 1.9E-32 T 15-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NJ56_05055 b962d60d17f234b6d1165d1f907faaef 255 SUPERFAMILY SSF52540 5 253 4.26E-62 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_05055 b962d60d17f234b6d1165d1f907faaef 255 SMART SM00382 31 231 5.2E-7 T 15-10-2018 IPR003593 AAA+ ATPase domain NJ56_03275 96dcbeb97dbab50bcce0af8df5fab620 192 Pfam PF01965 DJ-1/PfpI family 3 165 2.4E-30 T 15-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 NJ56_03275 96dcbeb97dbab50bcce0af8df5fab620 192 SUPERFAMILY SSF52317 3 168 9.54E-36 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_03275 96dcbeb97dbab50bcce0af8df5fab620 192 Gene3D G3DSA:3.40.50.880 1 176 1.2E-39 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_07730 90154c0076b7d9d90d2418224ad78212 293 Pfam PF14065 Protein of unknown function (DUF4255) 10 181 2.7E-28 T 15-10-2018 IPR025351 Protein of unknown function DUF4255 NJ56_04490 419f806ddd1c7410d493125c9126a428 305 Pfam PF11920 Protein of unknown function (DUF3438) 16 283 2.9E-109 T 15-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 NJ56_04490 419f806ddd1c7410d493125c9126a428 305 TIGRFAM TIGR03749 conj_TIGR03749: integrating conjugative element protein, PFL_4704 family 18 277 3.2E-100 T 15-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 NJ56_16450 209a7a24b7c86a2d740d25416f5dd2f8 179 Pfam PF05433 Glycine zipper 2TM domain 73 113 2.5E-10 T 15-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 NJ56_07140 9fe7ee0048263b12361cccc93f0bc3ea 268 Gene3D G3DSA:1.20.1080.10 1 259 2.7E-92 T 15-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 NJ56_07140 9fe7ee0048263b12361cccc93f0bc3ea 268 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 73 82 - T 15-10-2018 IPR024002 Formate/nitrite transporter, conserved site NJ56_07140 9fe7ee0048263b12361cccc93f0bc3ea 268 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 157 167 - T 15-10-2018 IPR024002 Formate/nitrite transporter, conserved site NJ56_07140 9fe7ee0048263b12361cccc93f0bc3ea 268 Pfam PF01226 Formate/nitrite transporter 20 247 4.3E-58 T 15-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 NJ56_07140 9fe7ee0048263b12361cccc93f0bc3ea 268 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 20 250 7.8E-81 T 15-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 NJ56_13330 3b424e643d0a2d9c1c4dc13d6eabe0f7 138 TIGRFAM TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family 3 133 2.9E-43 T 15-10-2018 IPR020000 Bacteriophage P2, LysB NJ56_14585 dc54ac3ee2dbfa142663f5f28348d448 298 Gene3D G3DSA:3.20.20.100 2 298 5.0E-107 T 15-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily NJ56_14585 dc54ac3ee2dbfa142663f5f28348d448 298 SUPERFAMILY SSF51430 7 295 1.31E-71 T 15-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily NJ56_14585 dc54ac3ee2dbfa142663f5f28348d448 298 PRINTS PR00069 Aldo-keto reductase signature 112 130 7.6E-7 T 15-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 NJ56_14585 dc54ac3ee2dbfa142663f5f28348d448 298 PRINTS PR00069 Aldo-keto reductase signature 143 160 7.6E-7 T 15-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 NJ56_14585 dc54ac3ee2dbfa142663f5f28348d448 298 Pfam PF00248 Aldo/keto reductase family 17 291 1.1E-57 T 15-10-2018 IPR023210 NADP-dependent oxidoreductase domain NJ56_12485 acec16e80c24a1e10d91362952bd5c76 315 Pfam PF08401 Domain of unknown function (DUF1738) 40 154 3.1E-38 T 15-10-2018 IPR013610 Domain of unknown function DUF1738 NJ56_12485 acec16e80c24a1e10d91362952bd5c76 315 PIRSF PIRSF037112 28 315 1.7E-114 T 15-10-2018 IPR017113 Antirestriction, ArdC NJ56_13255 5c81dfce14d5a748033548b0b27d6615 98 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 12 90 2.6E-7 T 15-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative NJ56_13825 281262ffa22834944bda94ccc9866ebf 86 Pfam PF13974 YebO-like protein 11 86 2.1E-29 T 15-10-2018 IPR025594 YebO-like protein NJ56_00450 0bd1de3c2823ba93f93f6c92982ee097 200 PIRSF PIRSF001296 7 199 2.6E-73 T 15-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 NJ56_00450 0bd1de3c2823ba93f93f6c92982ee097 200 Pfam PF02669 K+-transporting ATPase, c chain 12 193 1.9E-67 T 15-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 NJ56_00450 0bd1de3c2823ba93f93f6c92982ee097 200 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 11 194 5.5E-74 T 15-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 NJ56_00450 0bd1de3c2823ba93f93f6c92982ee097 200 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 8 195 32.805 T 15-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 NJ56_08590 0763a62ddb80bafab09fdb8aa1b66dc3 382 PIRSF PIRSF003085 2 382 8.5E-123 T 15-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 NJ56_08590 0763a62ddb80bafab09fdb8aa1b66dc3 382 Pfam PF02353 Mycolic acid cyclopropane synthetase 105 376 1.9E-83 T 15-10-2018 NJ56_08590 0763a62ddb80bafab09fdb8aa1b66dc3 382 SUPERFAMILY SSF53335 8 335 4.01E-83 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_08590 0763a62ddb80bafab09fdb8aa1b66dc3 382 Gene3D G3DSA:3.40.50.150 113 382 1.5E-100 T 15-10-2018 NJ56_04600 cdea34277a6e4e11a31eb455193353ce 192 Pfam PF11198 Protein of unknown function (DUF2857) 10 181 1.9E-65 T 15-10-2018 IPR021364 Protein of unknown function DUF2857 NJ56_18260 4e561072d0c8cf6a94414ae3ea864345 181 SUPERFAMILY SSF56024 42 180 1.91E-32 T 15-10-2018 NJ56_18260 4e561072d0c8cf6a94414ae3ea864345 181 Pfam PF13091 PLD-like domain 50 174 3.3E-27 T 15-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 NJ56_18260 4e561072d0c8cf6a94414ae3ea864345 181 Gene3D G3DSA:3.30.870.10 10 180 9.0E-44 T 15-10-2018 NJ56_03955 35b6ebfd34001bdb38ff829a23bfb7bb 185 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 183 5.6E-86 T 15-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ NJ56_03955 35b6ebfd34001bdb38ff829a23bfb7bb 185 SUPERFAMILY SSF52833 97 179 7.66E-5 T 15-10-2018 IPR036249 Thioredoxin-like superfamily NJ56_03955 35b6ebfd34001bdb38ff829a23bfb7bb 185 Gene3D G3DSA:3.40.30.10 40 182 1.7E-6 T 15-10-2018 NJ56_03955 35b6ebfd34001bdb38ff829a23bfb7bb 185 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 23 181 8.4E-77 T 15-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ NJ56_09525 cb776e24bb9c262bc7e1a0a000e6011d 165 SUPERFAMILY SSF54523 12 158 2.83E-9 T 15-10-2018 NJ56_09525 cb776e24bb9c262bc7e1a0a000e6011d 165 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 31 1.3E-5 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_09525 cb776e24bb9c262bc7e1a0a000e6011d 165 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 30 2.3E-5 T 15-10-2018 IPR012902 Prokaryotic N-terminal methylation site NJ56_11920 5abe9681796a2128423da2718ecc06d2 189 Gene3D G3DSA:3.30.420.10 1 181 7.7E-13 T 15-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 NJ56_11920 5abe9681796a2128423da2718ecc06d2 189 SUPERFAMILY SSF53098 3 180 1.82E-20 T 15-10-2018 IPR012337 Ribonuclease H-like superfamily NJ56_11920 5abe9681796a2128423da2718ecc06d2 189 Pfam PF16473 3' exoribonuclease, RNase T-like 3 176 1.5E-53 T 15-10-2018 IPR033390 3'-5' exoribonuclease Rv2179c-like domain NJ56_01715 30f65496bdb026c2dd083e734a20e844 309 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 32 299 2.1E-22 T 15-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 NJ56_01715 30f65496bdb026c2dd083e734a20e844 309 SUPERFAMILY SSF51695 26 305 1.57E-42 T 15-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 NJ56_01715 30f65496bdb026c2dd083e734a20e844 309 Gene3D G3DSA:3.20.20.190 24 309 3.5E-37 T 15-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 NJ56_12745 5db48672ab66ee7036e80238277cf1f3 64 Hamap MF_01549 Protein DsrB [dsrB]. 1 62 27.472 T 15-10-2018 IPR019717 Dextransucrase DSRB NJ56_12745 5db48672ab66ee7036e80238277cf1f3 64 Pfam PF10781 Dextransucrase DSRB 1 60 1.9E-37 T 15-10-2018 IPR019717 Dextransucrase DSRB NJ56_10215 6d695ce5eeb6b1b61a752137915de264 181 Pfam PF10554 Ash protein family 21 128 2.5E-34 T 15-10-2018 IPR018880 Bacteriophage P4, Ash protein NJ56_12525 4ba1c3c27d66de848b7220d37dfbf6b3 343 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 40 251 9.0E-40 T 15-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 NJ56_05335 c093954b6ee8ad4890a823e8e41a15ee 456 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 15-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 NJ56_05335 c093954b6ee8ad4890a823e8e41a15ee 456 PIRSF PIRSF006060 1 456 4.4E-63 T 15-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 NJ56_05335 c093954b6ee8ad4890a823e8e41a15ee 456 Pfam PF00324 Amino acid permease 18 430 2.9E-105 T 15-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 NJ56_05335 c093954b6ee8ad4890a823e8e41a15ee 456 Gene3D G3DSA:1.20.1740.10 11 456 3.6E-55 T 15-10-2018 NJ56_11075 1b022a3999679023d0727c8498b243c8 194 ProDom PD105195 LIPOPROTEIN YFEY MEMBRANE OUTER PRECURSOR SIGNAL ESCHERICHIA ECS3303 EXPORTED Y1456 16 190 2.0E-65 T 15-10-2018 IPR010938 Protein of unknown function DUF1131 NJ56_11075 1b022a3999679023d0727c8498b243c8 194 Pfam PF06572 Protein of unknown function (DUF1131) 22 190 2.4E-82 T 15-10-2018 IPR010938 Protein of unknown function DUF1131 NJ56_11075 1b022a3999679023d0727c8498b243c8 194 Gene3D G3DSA:2.60.460.10 26 191 8.5E-67 T 15-10-2018 IPR038714 YfeY-like superfamily NJ56_10035 1a4c9a3baddc45a2061b0fc5d3fe77d7 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 312 7.2E-43 T 15-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 NJ56_10015 93e417252fbd0277c6cdf672e77898d4 306 SUPERFAMILY SSF53850 92 302 1.55E-46 T 15-10-2018 NJ56_10015 93e417252fbd0277c6cdf672e77898d4 306 Pfam PF03466 LysR substrate binding domain 92 297 2.2E-45 T 15-10-2018 IPR005119 LysR, substrate-binding NJ56_10015 93e417252fbd0277c6cdf672e77898d4 306 SUPERFAMILY SSF46785 9 92 7.79E-22 T 15-10-2018 IPR036390 Winged helix DNA-binding domain superfamily NJ56_10015 93e417252fbd0277c6cdf672e77898d4 306 Gene3D G3DSA:3.40.190.290 96 299 3.4E-62 T 15-10-2018 NJ56_10015 93e417252fbd0277c6cdf672e77898d4 306 Gene3D G3DSA:1.10.10.10 7 95 4.6E-25 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_10015 93e417252fbd0277c6cdf672e77898d4 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 9.6E-19 T 15-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NJ56_17050 80498f917949a50a317084b9e0bfc048 553 Gene3D G3DSA:3.40.50.300 1 348 4.2E-13 T 15-10-2018 NJ56_17050 80498f917949a50a317084b9e0bfc048 553 SUPERFAMILY SSF52540 1 333 2.27E-17 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_17050 80498f917949a50a317084b9e0bfc048 553 Pfam PF11398 Protein of unknown function (DUF2813) 1 376 3.1E-157 T 15-10-2018 IPR022602 Protein of unknown function DUF2813 NJ56_11440 78154e12d3e8590abf932a66726dad0c 93 Pfam PF08891 YfcL protein 4 86 5.5E-36 T 15-10-2018 IPR014987 Uncharacterised protein family YfcL NJ56_17155 34eba61a4e8acb3ee952a8cb13df10ad 102 Pfam PF07214 Protein of unknown function (DUF1418) 1 92 7.7E-36 T 15-10-2018 IPR010815 Protein of unknown function DUF1418 NJ56_02235 c99779766145ae25af0013f86c86381f 176 Pfam PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) 5 151 4.7E-7 T 15-10-2018 IPR013388 Type III secretion apparatus protein OrgA/MxiK GO:0009405 NJ56_07540 fec5ba9fcb3bd599c76a724c63ffb638 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 9.3E-59 T 15-10-2018 IPR007456 Smg NJ56_07540 fec5ba9fcb3bd599c76a724c63ffb638 157 Hamap MF_00598 Protein Smg [smg]. 1 157 31.97 T 15-10-2018 IPR007456 Smg NJ56_01615 75e0b6e21bdc31ed136a2c310b3d4e8d 303 Pfam PF04381 Putative exonuclease, RdgC 2 300 2.6E-130 T 15-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 NJ56_01615 75e0b6e21bdc31ed136a2c310b3d4e8d 303 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 2 302 42.347 T 15-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 NJ56_05295 51d8b0b91289e8d49db817a849c395d0 246 Gene3D G3DSA:3.40.50.10090 4 245 2.9E-69 T 15-10-2018 NJ56_05295 51d8b0b91289e8d49db817a849c395d0 246 Gene3D G3DSA:3.40.50.10090 32 165 2.9E-69 T 15-10-2018 NJ56_05295 51d8b0b91289e8d49db817a849c395d0 246 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 242 1.7E-43 T 15-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_05295 51d8b0b91289e8d49db817a849c395d0 246 SUPERFAMILY SSF69618 1 245 2.49E-55 T 15-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 NJ56_13660 fb89cad2ea12f1f760c8e804e77f2aa3 505 Pfam PF03553 Na+/H+ antiporter family 179 479 7.2E-37 T 15-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 NJ56_01430 c65576c5defdfa23891e63ebad1c0669 110 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 13 108 8.9E-40 T 15-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 NJ56_01430 c65576c5defdfa23891e63ebad1c0669 110 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 20 93 1.8E-18 T 15-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 NJ56_11180 edd2d60f538920051bf2f1fa924c2018 119 Pfam PF14282 FlxA-like protein 16 111 9.7E-20 T 15-10-2018 IPR025577 FlxA-like protein NJ56_16865 6df68d90ba892133bc3622233f9576b2 259 Pfam PF02698 DUF218 domain 80 243 1.7E-24 T 15-10-2018 IPR003848 Domain of unknown function DUF218 NJ56_10095 66e995878a88ceaecc6d00ac0f5230fb 216 Pfam PF14564 Membrane binding 99 205 1.5E-14 T 15-10-2018 IPR029283 Calcium-dependent cell adhesion molecule 1, membrane-binding domain NJ56_10095 66e995878a88ceaecc6d00ac0f5230fb 216 Pfam PF08964 Beta/Gamma crystallin 10 93 7.3E-27 T 15-10-2018 IPR015059 Calcium-dependent cell adhesion molecule, N-terminal GO:0016020|GO:0098609 NJ56_10095 66e995878a88ceaecc6d00ac0f5230fb 216 Gene3D G3DSA:2.60.40.1720 96 207 7.3E-7 T 15-10-2018 IPR038423 Calcium-dependent cell adhesion molecule, C-terminal domain superfamily NJ56_10095 66e995878a88ceaecc6d00ac0f5230fb 216 Gene3D G3DSA:2.60.20.10 8 93 4.0E-19 T 15-10-2018 NJ56_04315 acef29f2d7108cd879eb31514ac461f7 255 TIGRFAM TIGR04267 mod_HExxH: HEXXH motif domain 137 249 2.1E-6 T 15-10-2018 IPR026337 HEXXH motif domain NJ56_12145 025fc4301b4d9df5a7bdc325d4c79502 188 Gene3D G3DSA:2.20.25.540 83 136 7.6E-12 T 15-10-2018 NJ56_12145 025fc4301b4d9df5a7bdc325d4c79502 188 PIRSF PIRSF012337 1 188 2.0E-55 T 15-10-2018 IPR014462 Phage-associated protein Gp45 NJ56_12145 025fc4301b4d9df5a7bdc325d4c79502 188 Pfam PF06890 Bacteriophage Mu Gp45 protein 17 173 4.6E-56 T 15-10-2018 IPR014462 Phage-associated protein Gp45 NJ56_12145 025fc4301b4d9df5a7bdc325d4c79502 188 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 9 150 1.1E-19 T 15-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 NJ56_04605 705b7422672034e1417025848cb1602d 243 PIRSF PIRSF028111 6 238 1.4E-63 T 15-10-2018 IPR016868 Bacteriophage B3, Orf5 NJ56_04605 705b7422672034e1417025848cb1602d 243 Pfam PF10979 Protein of unknown function (DUF2786) 13 50 5.7E-12 T 15-10-2018 IPR024498 Domain of unknown function DUF2786 NJ56_11630 d1fdcf1a3023a75798d8f56ce13bd6b2 151 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 9 151 35.531 T 15-10-2018 IPR007334 Uncharacterised protein family UPF0208 NJ56_11630 d1fdcf1a3023a75798d8f56ce13bd6b2 151 Pfam PF04217 Protein of unknown function, DUF412 11 149 1.1E-58 T 15-10-2018 IPR007334 Uncharacterised protein family UPF0208 NJ56_08875 6d7d1d04a1b161e44084d10eb679e68d 140 Pfam PF01478 Type IV leader peptidase family 12 108 3.8E-8 T 15-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 NJ56_08875 6d7d1d04a1b161e44084d10eb679e68d 140 Gene3D G3DSA:1.20.120.1220 3 116 2.0E-7 T 15-10-2018 NJ56_14390 c57f848d1e3ac52b03be9ce94ca6785a 272 Pfam PF01497 Periplasmic binding protein 22 247 1.2E-25 T 15-10-2018 IPR002491 ABC transporter periplasmic binding domain NJ56_14390 c57f848d1e3ac52b03be9ce94ca6785a 272 Gene3D G3DSA:3.40.50.1980 18 139 4.4E-39 T 15-10-2018 NJ56_14390 c57f848d1e3ac52b03be9ce94ca6785a 272 SUPERFAMILY SSF53807 18 263 9.42E-47 T 15-10-2018 NJ56_14390 c57f848d1e3ac52b03be9ce94ca6785a 272 Gene3D G3DSA:3.40.50.1980 140 272 4.0E-47 T 15-10-2018 NJ56_09080 0b892bb5142fb5f205136938c0fc3199 239 Pfam PF11101 Protein of unknown function (DUF2884) 23 238 3.7E-45 T 15-10-2018 IPR021307 Protein of unknown function DUF2884 NJ56_01760 8ba3093ff986463addaa5f833286ba15 240 SUPERFAMILY SSF141523 40 158 8.5E-9 T 15-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like NJ56_01760 8ba3093ff986463addaa5f833286ba15 240 Pfam PF03734 L,D-transpeptidase catalytic domain 43 158 4.8E-7 T 15-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 NJ56_05300 ed023c729081e5320b95e215e2079920 374 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 33 362 8.0E-140 T 15-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX NJ56_04610 85ceed256942285b9dbe4d32ab878268 565 SUPERFAMILY SSF110849 36 138 2.27E-9 T 15-10-2018 IPR036086 ParB/Sulfiredoxin superfamily NJ56_04610 85ceed256942285b9dbe4d32ab878268 565 Pfam PF02195 ParB-like nuclease domain 39 102 8.7E-5 T 15-10-2018 IPR003115 ParB/Sulfiredoxin NJ56_04610 85ceed256942285b9dbe4d32ab878268 565 TIGRFAM TIGR03764 ICE_PFGI_1_parB: integrating conjugative element, PFGI_1 class, ParB family protein 27 291 4.0E-114 T 15-10-2018 IPR022304 Integrating conjugative element, PFGI-1, ParB NJ56_04640 04d3eefde3181c641600253214e8b72a 103 Pfam PF04341 Protein of unknown function, DUF485 11 98 2.4E-34 T 15-10-2018 IPR007436 Protein of unknown function DUF485 NJ56_01895 c0ae463b59bc35e9371a54d0cf9cff26 447 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 443 6.3E-159 T 15-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 NJ56_01895 c0ae463b59bc35e9371a54d0cf9cff26 447 PIRSF PIRSF004539 1 447 7.6E-184 T 15-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 NJ56_01895 c0ae463b59bc35e9371a54d0cf9cff26 447 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 379 8.2E-150 T 15-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 NJ56_04260 f1e798a48e966fe745ce13bf80a86e77 166 Pfam PF04186 FxsA cytoplasmic membrane protein 8 109 3.5E-33 T 15-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 NJ56_05065 8fb261a8dfd15969b8ba6db72e702a65 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 8.0E-64 T 15-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 NJ56_01525 d23aadb8f61375658aa6830f08b4ce1f 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 2.9E-76 T 15-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 NJ56_01525 d23aadb8f61375658aa6830f08b4ce1f 149 Pfam PF03477 ATP cone domain 50 136 9.6E-16 T 15-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 NJ56_01525 d23aadb8f61375658aa6830f08b4ce1f 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 88.909 T 15-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 NJ56_10610 0e6ab1d6c986b59ae787353ce23c2f22 321 SMART SM00530 18 79 4.2E-5 T 15-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NJ56_10610 0e6ab1d6c986b59ae787353ce23c2f22 321 Pfam PF13464 Domain of unknown function (DUF4115) 244 318 3.5E-24 T 15-10-2018 IPR025194 Domain of unknown function DUF4115 NJ56_10610 0e6ab1d6c986b59ae787353ce23c2f22 321 SUPERFAMILY SSF47413 12 56 7.24E-9 T 15-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 NJ56_10610 0e6ab1d6c986b59ae787353ce23c2f22 321 Gene3D G3DSA:1.10.260.40 5 112 4.7E-21 T 15-10-2018 NJ56_10610 0e6ab1d6c986b59ae787353ce23c2f22 321 Pfam PF13413 Helix-turn-helix domain 18 79 4.2E-16 T 15-10-2018 NJ56_02440 b36858c818501a3b9058146d0bac8737 202 Pfam PF03458 UPF0126 domain 4 78 5.6E-23 T 15-10-2018 IPR005115 Uncharacterised domain UPF0126 NJ56_02440 b36858c818501a3b9058146d0bac8737 202 Pfam PF03458 UPF0126 domain 92 163 1.7E-19 T 15-10-2018 IPR005115 Uncharacterised domain UPF0126 NJ56_02920 9fc0e511b23698ce87ebafeb17416808 156 Pfam PF12821 Threonine/Serine exporter, ThrE 12 146 5.8E-37 T 15-10-2018 IPR024528 Threonine/Serine exporter, ThrE NJ56_02920 9fc0e511b23698ce87ebafeb17416808 156 Hamap MF_01191 UPF0442 protein YjjB [yjjB]. 1 156 36.214 T 15-10-2018 IPR020914 Uncharacterised protein family UPF0442 NJ56_17090 ed5f39b24d172aea565c1d0b609af118 183 Pfam PF12883 Protein of unknown function (DUF3828) 41 166 2.6E-11 T 15-10-2018 IPR024289 Domain of unknown function DUF3828 NJ56_05020 2f54fb10b704bcfe5f1aededa054b535 185 Pfam PF04449 CS1 type fimbrial major subunit 24 160 7.8E-7 T 15-10-2018 IPR007540 Fimbrial major subunit, CS1-type GO:0009289 NJ56_12135 fd645ed5f55d5072468b5d8116fd1b9d 434 Pfam PF07157 DNA circularisation protein N-terminus 7 93 1.4E-33 T 15-10-2018 IPR009826 DNA circulation, N-terminal NJ56_12135 fd645ed5f55d5072468b5d8116fd1b9d 434 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 3 122 1.0E-47 T 15-10-2018 IPR009826 DNA circulation, N-terminal NJ56_09015 ab504ae0b7bdd45ca8016a56589b082f 120 ProDom PD015842 PTS IIA COMPONENT GLUCITOL/SORBITOL-SPECIFIC SYSTEM ENZYME TRANSFERASE SYSTEM PHOSPHOTRANSFERASE EIIA 15 118 4.0E-33 T 15-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 NJ56_09015 ab504ae0b7bdd45ca8016a56589b082f 120 SUPERFAMILY SSF141530 3 118 3.27E-36 T 15-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 NJ56_09015 ab504ae0b7bdd45ca8016a56589b082f 120 Gene3D G3DSA:2.40.33.40 1 120 4.5E-29 T 15-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 NJ56_09015 ab504ae0b7bdd45ca8016a56589b082f 120 Pfam PF03829 PTS system glucitol/sorbitol-specific IIA component 4 115 8.7E-38 T 15-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 NJ56_08220 56d335f33d1ae4171942952642c64dca 84 Pfam PF01722 BolA-like protein 21 74 4.5E-14 T 15-10-2018 IPR002634 BolA protein NJ56_08220 56d335f33d1ae4171942952642c64dca 84 Gene3D G3DSA:3.30.300.90 1 84 3.6E-36 T 15-10-2018 NJ56_08220 56d335f33d1ae4171942952642c64dca 84 PIRSF PIRSF003113 1 83 6.8E-22 T 15-10-2018 IPR002634 BolA protein NJ56_08220 56d335f33d1ae4171942952642c64dca 84 SUPERFAMILY SSF82657 2 82 1.15E-28 T 15-10-2018 IPR036065 BolA-like superfamily NJ56_08305 d22c70b7f601247da3088d9f3ff18185 217 SUPERFAMILY SSF52317 1 215 9.31E-62 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_08305 d22c70b7f601247da3088d9f3ff18185 217 PIRSF PIRSF006320 1 216 5.6E-105 T 15-10-2018 IPR026041 Glyoxalase ElbB NJ56_08305 d22c70b7f601247da3088d9f3ff18185 217 Gene3D G3DSA:3.40.50.880 1 217 4.6E-93 T 15-10-2018 IPR029062 Class I glutamine amidotransferase-like NJ56_11600 5e002d632a35685faf4718c8c4a42429 418 Pfam PF03611 PTS system sugar-specific permease component 11 405 2.5E-147 T 15-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 NJ56_07675 df560dffdbafb3fc1d9e49f245a6e5ed 152 Pfam PF06841 T4-like virus tail tube protein gp19 15 145 1.5E-28 T 15-10-2018 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 NJ56_07675 df560dffdbafb3fc1d9e49f245a6e5ed 152 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 8 146 4.2E-22 T 15-10-2018 IPR011747 Conserved hypothetical protein CHP02241 NJ56_00050 022db8bf65fcf4be3903daf9eb10676d 368 Pfam PF12698 ABC-2 family transporter protein 25 356 3.0E-48 T 15-10-2018 NJ56_00050 022db8bf65fcf4be3903daf9eb10676d 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 253 277 7.2E-7 T 15-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 NJ56_00050 022db8bf65fcf4be3903daf9eb10676d 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 290 309 7.2E-7 T 15-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 NJ56_00050 022db8bf65fcf4be3903daf9eb10676d 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 310 329 7.2E-7 T 15-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 NJ56_00985 48f7b09a1d0c94ac05d1c4c20182d8f5 161 Pfam PF15941 FidL-like putative membrane protein 72 158 2.2E-6 T 15-10-2018 IPR031854 Putative membrane protein FidL-like NJ56_12200 2d3266fdf7b22207b3a21d6257978987 336 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 3 330 45.361 T 15-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 NJ56_12200 2d3266fdf7b22207b3a21d6257978987 336 Pfam PF04245 37-kD nucleoid-associated bacterial protein 10 324 1.9E-99 T 15-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 NJ56_00845 9da6d012d69de8f1d6fd98a137f4baac 229 Pfam PF01988 VIT family 14 221 1.4E-51 T 15-10-2018 IPR008217 Ccc1 family NJ56_15130 f0deb47ccf7e5b68f3b921f6b843f189 147 Pfam PF10754 Protein of unknown function (DUF2569) 7 145 9.7E-45 T 15-10-2018 IPR019690 Protein of unknown function DUF2569 NJ56_10870 63313be4e8efaeb246ba6b93c1e9d8db 489 Gene3D G3DSA:3.30.2010.10 74 152 3.7E-6 T 15-10-2018 NJ56_10870 63313be4e8efaeb246ba6b93c1e9d8db 489 SUPERFAMILY SSF48452 314 430 8.22E-13 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_10870 63313be4e8efaeb246ba6b93c1e9d8db 489 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 4 486 40.494 T 15-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 NJ56_10870 63313be4e8efaeb246ba6b93c1e9d8db 489 Gene3D G3DSA:1.25.40.10 252 486 3.4E-15 T 15-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 NJ56_10870 63313be4e8efaeb246ba6b93c1e9d8db 489 Pfam PF14559 Tetratricopeptide repeat 355 420 4.6E-8 T 15-10-2018 NJ56_10870 63313be4e8efaeb246ba6b93c1e9d8db 489 Pfam PF01435 Peptidase family M48 73 260 1.1E-28 T 15-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 NJ56_12085 cf405300063bf8c9f6c518992ead3377 105 Pfam PF05135 Phage gp6-like head-tail connector protein 4 101 1.4E-20 T 15-10-2018 IPR021146 Phage gp6-like head-tail connector protein NJ56_12085 cf405300063bf8c9f6c518992ead3377 105 Gene3D G3DSA:1.10.3230.30 1 94 7.5E-8 T 15-10-2018 NJ56_12085 cf405300063bf8c9f6c518992ead3377 105 TIGRFAM TIGR01560 put_DNA_pack: uncharacterized phage protein (possible DNA packaging) 4 101 4.4E-9 T 15-10-2018 IPR006450 Phage protein of unkonwn function NJ56_02250 22d273af98f5c01ee311e0b41ccf81d2 158 Pfam PF01464 Transglycosylase SLT domain 25 122 3.6E-21 T 15-10-2018 IPR008258 Transglycosylase SLT domain 1 NJ56_02250 22d273af98f5c01ee311e0b41ccf81d2 158 Gene3D G3DSA:1.10.530.10 22 150 3.3E-17 T 15-10-2018 NJ56_02250 22d273af98f5c01ee311e0b41ccf81d2 158 SUPERFAMILY SSF53955 20 139 6.17E-32 T 15-10-2018 IPR023346 Lysozyme-like domain superfamily NJ56_00060 3b932b9da2c99e7aa1c35a9d74c5ec72 150 Gene3D G3DSA:3.90.1170.40 1 150 4.9E-55 T 15-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 NJ56_00060 3b932b9da2c99e7aa1c35a9d74c5ec72 150 Pfam PF02391 MoaE protein 13 121 1.4E-35 T 15-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 NJ56_00060 3b932b9da2c99e7aa1c35a9d74c5ec72 150 SUPERFAMILY SSF54690 5 150 1.31E-54 T 15-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 NJ56_16330 2df17f142dfaaf5b020a3a19640c4cb9 453 Pfam PF03390 2-hydroxycarboxylate transporter family 39 446 1.7E-147 T 15-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 NJ56_16330 2df17f142dfaaf5b020a3a19640c4cb9 453 PIRSF PIRSF005348 15 453 7.6E-159 T 15-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 NJ56_01005 36eb9c31f99a06db1b55ae8d53b274e9 240 SUPERFAMILY SSF56300 1 229 4.94E-32 T 15-10-2018 NJ56_01005 36eb9c31f99a06db1b55ae8d53b274e9 240 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 240 126.866 T 15-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 NJ56_01005 36eb9c31f99a06db1b55ae8d53b274e9 240 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 229 1.5E-103 T 15-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 NJ56_01005 36eb9c31f99a06db1b55ae8d53b274e9 240 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 204 6.0E-11 T 15-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 NJ56_01005 36eb9c31f99a06db1b55ae8d53b274e9 240 Gene3D G3DSA:3.60.21.10 1 229 3.4E-19 T 15-10-2018 IPR029052 Metallo-dependent phosphatase-like NJ56_00725 c2e8c0fac8db073cdb74b97af653a8b6 128 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 6 123 18.932 T 15-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 NJ56_00725 c2e8c0fac8db073cdb74b97af653a8b6 128 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 117 8.1E-25 T 15-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 NJ56_00725 c2e8c0fac8db073cdb74b97af653a8b6 128 TIGRFAM TIGR00494 crcB: protein CrcB 7 121 1.9E-37 T 15-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 NJ56_11710 d1d998b0f3db4c5e72b5020374e8e8ee 181 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 157 3.0E-33 T 15-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 NJ56_11710 d1d998b0f3db4c5e72b5020374e8e8ee 181 Gene3D G3DSA:1.20.120.1200 1 159 6.0E-48 T 15-10-2018 NJ56_10515 44f6f618f27f01f1c8cad6dbab07aaaf 339 Pfam PF03824 High-affinity nickel-transport protein 75 325 8.8E-41 T 15-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 NJ56_07985 b966da968dc5196b1ce4002d7d4e7c3c 333 Pfam PF00174 Oxidoreductase molybdopterin binding domain 107 266 9.0E-28 T 15-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 NJ56_07985 b966da968dc5196b1ce4002d7d4e7c3c 333 Gene3D G3DSA:3.90.420.10 63 333 2.1E-120 T 15-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 NJ56_07985 b966da968dc5196b1ce4002d7d4e7c3c 333 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 5 333 55.549 T 15-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 NJ56_07985 b966da968dc5196b1ce4002d7d4e7c3c 333 SUPERFAMILY SSF56524 73 329 7.06E-93 T 15-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 NJ56_11790 fdc192c32ae6b6c47ab1fb19030a2896 500 Pfam PF14264 Glucosyl transferase GtrII 27 332 1.4E-27 T 15-10-2018 IPR025686 Glucosyl transferase II NJ56_12150 dda9337a5b28d097014969740d8828c9 137 Pfam PF07409 Phage protein GP46 19 129 5.8E-37 T 15-10-2018 IPR010877 Bacteriophage Mu, Gp46 NJ56_15330 943840e825502ee34bffb2add92d0b63 104 Pfam PF04972 BON domain 37 104 3.2E-21 T 15-10-2018 IPR007055 BON domain NJ56_15330 943840e825502ee34bffb2add92d0b63 104 SMART SM00749 42 104 9.8E-8 T 15-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria NJ56_18160 5171ae3b03e5963af3d335c2d6a7144f 247 TIGRFAM TIGR02756 TraK_Ftype: type-F conjugative transfer system secretin TraK 11 236 1.4E-44 T 15-10-2018 IPR014126 Type-F conjugative transfer system secretin TraK NJ56_18160 5171ae3b03e5963af3d335c2d6a7144f 247 Pfam PF06586 TraK protein 29 235 1.9E-44 T 15-10-2018 IPR010563 Pilus assembly TraK NJ56_12345 0d849bbb40f2e72d6bd36a174751e8bc 357 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 18 354 4.3E-127 T 15-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 NJ56_12345 0d849bbb40f2e72d6bd36a174751e8bc 357 Pfam PF03601 Conserved hypothetical protein 698 21 334 2.0E-108 T 15-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 NJ56_07715 f86a3a5decf381f0060c9c5669d69d58 318 SUPERFAMILY SSF88874 134 318 3.92E-15 T 15-10-2018 NJ56_02580 5bed6328421a94fc1da89b1c64eb50aa 470 Gene3D G3DSA:3.90.176.10 204 453 1.8E-24 T 15-10-2018 NJ56_02580 5bed6328421a94fc1da89b1c64eb50aa 470 Pfam PF03496 ADP-ribosyltransferase exoenzyme 277 443 2.3E-9 T 15-10-2018 IPR003540 ADP ribosyltransferase GO:0005576|GO:0009405 NJ56_02580 5bed6328421a94fc1da89b1c64eb50aa 470 SUPERFAMILY SSF56399 255 454 1.22E-16 T 15-10-2018 NJ56_12620 c481c44d679195227b5d51b70d0d66af 444 Gene3D G3DSA:1.20.1250.20 15 219 5.9E-51 T 15-10-2018 NJ56_12620 c481c44d679195227b5d51b70d0d66af 444 PIRSF PIRSF002808 4 439 4.7E-126 T 15-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 NJ56_12620 c481c44d679195227b5d51b70d0d66af 444 Gene3D G3DSA:1.20.1250.20 236 430 2.7E-38 T 15-10-2018 NJ56_12620 c481c44d679195227b5d51b70d0d66af 444 Pfam PF07690 Major Facilitator Superfamily 32 392 2.1E-51 T 15-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NJ56_12620 c481c44d679195227b5d51b70d0d66af 444 SUPERFAMILY SSF103473 13 426 3.4E-76 T 15-10-2018 IPR036259 MFS transporter superfamily NJ56_18205 f3ee1b2b1eeb3624456b47feab640976 251 TIGRFAM TIGR02739 TraF: type-F conjugative transfer system pilin assembly protein TraF 7 250 2.8E-88 T 15-10-2018 IPR014110 Type-F conjugative transfer system pilin assembly protein TraF NJ56_18205 f3ee1b2b1eeb3624456b47feab640976 251 Pfam PF13728 F plasmid transfer operon protein 29 240 1.3E-62 T 15-10-2018 IPR039555 F plasmid transfer operon protein NJ56_09035 503b7fabe56b5339d2362d57da00d223 109 Gene3D G3DSA:1.10.890.30 20 109 4.8E-49 T 15-10-2018 IPR038304 YmgD domain superfamily NJ56_09035 503b7fabe56b5339d2362d57da00d223 109 Pfam PF16456 YmgD protein 26 107 7.6E-45 T 15-10-2018 IPR032497 Uncharacterised protein YmgD NJ56_13195 2f5cac87bd78732ce9922e39cd042dc5 74 Pfam PF10769 Protein of unknown function (DUF2594) 1 74 7.9E-36 T 15-10-2018 NJ56_10230 122ee2b0241122d38be3fc871cafb7c6 233 ProDom PD037484 CAPSID DETERMINATION SIZE HEAD GLYCOPROTEIN SID MORPHOGENESIS CP-933I ENCODED LATE 9 213 5.0E-29 T 15-10-2018 NJ56_14725 08c8133b98ba89068e26dd3932d36339 116 Pfam PF04024 PspC domain 5 61 2.0E-15 T 15-10-2018 IPR007168 Phage shock protein, PspC, N-terminal NJ56_14725 08c8133b98ba89068e26dd3932d36339 116 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 5 116 2.6E-39 T 15-10-2018 IPR014320 Phage shock protein, PspC NJ56_16250 d15f6e14f4506aa70bb9d482c4f447ff 55 Pfam PF10617 Protein of unknown function (DUF2474) 16 54 2.6E-20 T 15-10-2018 IPR018895 Protein of unknown function DUF2474 NJ56_00090 aea3e93de13df8d477a93cdc40856423 350 Pfam PF01032 FecCD transport family 21 340 2.5E-92 T 15-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 NJ56_00090 aea3e93de13df8d477a93cdc40856423 350 Gene3D G3DSA:1.10.3470.10 9 347 6.0E-108 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_00090 aea3e93de13df8d477a93cdc40856423 350 SUPERFAMILY SSF81345 13 341 1.83E-81 T 15-10-2018 IPR037294 ABC transporter, BtuC-like NJ56_05980 d43dc55b976897e79baafb63546c9f10 205 Pfam PF03458 UPF0126 domain 91 164 8.9E-21 T 15-10-2018 IPR005115 Uncharacterised domain UPF0126 NJ56_05980 d43dc55b976897e79baafb63546c9f10 205 Pfam PF03458 UPF0126 domain 5 78 6.1E-19 T 15-10-2018 IPR005115 Uncharacterised domain UPF0126 NJ56_15565 eeb585d2ca927c72919fec415bde37ec 100 Pfam PF07383 Protein of unknown function (DUF1496) 47 98 6.9E-25 T 15-10-2018 IPR009971 Protein of unknown function DUF1496 NJ56_07080 9ea6c88f0c13f704e5429db4db23537f 182 Pfam PF05137 Fimbrial assembly protein (PilN) 101 172 6.4E-5 T 15-10-2018 IPR007813 Fimbrial assembly PilN NJ56_00795 0099d5a4af53baa3ceabef3a7fcf9da7 438 Pfam PF11329 Protein of unknown function (DUF3131) 51 415 3.0E-140 T 15-10-2018 IPR021478 Protein of unknown function DUF3131 NJ56_05125 d6b49a7be86e2b4d4f14cf8d849cae0f 126 Pfam PF10694 Protein of unknown function (DUF2500) 5 115 5.3E-34 T 15-10-2018 IPR019635 Protein of unknown function DUF2500 NJ56_05125 d6b49a7be86e2b4d4f14cf8d849cae0f 126 Gene3D G3DSA:2.40.50.660 36 125 3.1E-27 T 15-10-2018 NJ56_13250 81da4ea61a880e06ea4901b8c1956a08 40 Pfam PF06528 Phage P2 GpE 1 36 4.2E-20 T 15-10-2018 IPR009493 Burkholderia phage phiE202, Gp27 NJ56_17045 63609ce789b179b7b14aad52a78602f4 360 Pfam PF04393 Protein of unknown function (DUF535) 33 311 2.1E-98 T 15-10-2018 IPR007488 Protein of unknown function DUF535 NJ56_13940 2bb24d876fed96ae8fa2b9582a2fa435 282 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 11 280 7.6E-112 T 15-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 NJ56_13940 2bb24d876fed96ae8fa2b9582a2fa435 282 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 10 280 1.2E-141 T 15-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 NJ56_10025 10d2edf1ece8a554fa339370cb4cb2dd 328 Gene3D G3DSA:3.40.50.2300 130 267 3.8E-92 T 15-10-2018 NJ56_10025 10d2edf1ece8a554fa339370cb4cb2dd 328 SUPERFAMILY SSF53822 27 326 2.9E-64 T 15-10-2018 IPR028082 Periplasmic binding protein-like I NJ56_10025 10d2edf1ece8a554fa339370cb4cb2dd 328 Gene3D G3DSA:3.40.50.2300 31 300 3.8E-92 T 15-10-2018 NJ56_10025 10d2edf1ece8a554fa339370cb4cb2dd 328 Pfam PF13407 Periplasmic binding protein domain 31 288 1.3E-52 T 15-10-2018 IPR025997 Periplasmic binding protein NJ56_09975 80db7b46b25d628431f6a5df6950c997 135 Hamap MF_00546 Acid shock protein [asr]. 1 131 15.237 T 15-10-2018 IPR023497 Acid shock protein NJ56_14235 7b62b1e45bbdffb9004e39d047966570 70 Pfam PF13619 KTSC domain 7 64 3.8E-24 T 15-10-2018 IPR025309 KTSC domain NJ56_08585 9d47baf444136d4d84d540a982a9ad37 174 Pfam PF12915 Protein of unknown function (DUF3833) 12 172 8.7E-65 T 15-10-2018 IPR024409 Protein of unknown function DUF3833 NJ56_12560 188af8037c398b881e3fd65d8745a734 63 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 5 54 1.2E-23 T 15-10-2018 IPR010260 DNA-binding transcriptional activator AlpA NJ56_12560 188af8037c398b881e3fd65d8745a734 63 Gene3D G3DSA:1.10.238.160 5 62 9.8E-7 T 15-10-2018 NJ56_10690 d6bef9d604f0434f13c2e0be8dfac3bf 60 Pfam PF12244 Protein of unknown function (DUF3606) 4 57 5.0E-22 T 15-10-2018 IPR022037 Protein of unknown function DUF3606 NJ56_16860 c8cdd1793c378952b1129906478c530b 262 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 3 256 41.589 T 15-10-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 NJ56_16860 c8cdd1793c378952b1129906478c530b 262 SUPERFAMILY SSF53335 4 256 1.3E-36 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_16860 c8cdd1793c378952b1129906478c530b 262 Gene3D G3DSA:3.40.50.150 9 262 1.3E-69 T 15-10-2018 NJ56_16860 c8cdd1793c378952b1129906478c530b 262 Pfam PF13847 Methyltransferase domain 45 148 3.0E-18 T 15-10-2018 IPR025714 Methyltransferase domain NJ56_09295 a8a75f55d60a41d927dfba5cbbfec24e 224 Pfam PF03006 Haemolysin-III related 20 217 3.0E-39 T 15-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 NJ56_09295 a8a75f55d60a41d927dfba5cbbfec24e 224 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 23 224 1.3E-71 T 15-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 NJ56_15620 26cb3da85363878d09e6689760631c14 346 Gene3D G3DSA:3.40.720.10 23 325 2.5E-44 T 15-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 NJ56_15620 26cb3da85363878d09e6689760631c14 346 SUPERFAMILY SSF53649 36 301 5.72E-16 T 15-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 NJ56_15620 26cb3da85363878d09e6689760631c14 346 Pfam PF00884 Sulfatase 35 297 7.8E-29 T 15-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 NJ56_12920 10c5475f99dcb3bd826ff501172cb7a8 147 Gene3D G3DSA:1.20.58.300 5 121 1.0E-14 T 15-10-2018 NJ56_12920 10c5475f99dcb3bd826ff501172cb7a8 147 Pfam PF05130 FlgN protein 3 136 3.8E-25 T 15-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 NJ56_12920 10c5475f99dcb3bd826ff501172cb7a8 147 SUPERFAMILY SSF140566 3 121 8.76E-19 T 15-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 NJ56_02225 5a847332bac5e394292333a4087e3638 100 SUPERFAMILY SSF140129 32 86 3.92E-5 T 15-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 NJ56_00310 356c427a086075fbaef33d123af03637 45 Pfam PF08173 Membrane bound YbgT-like protein 1 27 1.8E-15 T 15-10-2018 IPR012994 Membrane bound YbgT-like NJ56_00310 356c427a086075fbaef33d123af03637 45 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 29 8.3E-20 T 15-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 NJ56_18255 4ec796c7f682d0d10881f751a59ac184 111 SUPERFAMILY SSF46955 3 57 1.19E-17 T 15-10-2018 IPR009061 Putative DNA-binding domain superfamily NJ56_18255 4ec796c7f682d0d10881f751a59ac184 111 Gene3D G3DSA:1.10.10.10 2 66 3.6E-22 T 15-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily NJ56_18255 4ec796c7f682d0d10881f751a59ac184 111 Pfam PF02316 Mu DNA-binding domain 15 104 2.0E-12 T 15-10-2018 IPR003314 Mu-type HTH domain GO:0003677 NJ56_00105 64c8753f8cf658bc4c68ba8da9d8a208 81 Gene3D G3DSA:1.10.720.30 14 73 1.3E-32 T 15-10-2018 IPR036361 SAP domain superfamily NJ56_00105 64c8753f8cf658bc4c68ba8da9d8a208 81 Pfam PF09905 DNA-binding protein VF530 7 68 6.7E-36 T 15-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 NJ56_09480 ce4aa1b922269275bf5ecca7f55e360f 346 SUPERFAMILY SSF51430 1 344 6.55E-108 T 15-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily NJ56_09480 ce4aa1b922269275bf5ecca7f55e360f 346 Gene3D G3DSA:3.20.20.100 1 346 9.5E-139 T 15-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily NJ56_09480 ce4aa1b922269275bf5ecca7f55e360f 346 Pfam PF00248 Aldo/keto reductase family 16 337 3.3E-72 T 15-10-2018 IPR023210 NADP-dependent oxidoreductase domain NJ56_13390 f2450f1116f359292f245cf6bdd10fc3 769 Pfam PF05840 Bacteriophage replication gene A protein (GPA) 139 469 9.6E-99 T 15-10-2018 IPR008766 Replication gene A protein GO:0006260 NJ56_12125 657ee6ba0716623688633b1edf531d52 626 Pfam PF10145 Phage-related minor tail protein 87 288 3.0E-32 T 15-10-2018 IPR010090 Phage tail tape measure protein NJ56_12125 657ee6ba0716623688633b1edf531d52 626 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 46 398 1.1E-77 T 15-10-2018 IPR010090 Phage tail tape measure protein NJ56_01020 394c61676e34d098d4a710df362d456f 810 Pfam PF02687 FtsX-like permease family 714 799 7.1E-6 T 15-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 NJ56_05345 3712633014be7b179b554f1f7766a9a7 457 Hamap MF_01003 Probable ECA polymerase [wzyE]. 1 447 38.681 T 15-10-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 NJ56_05345 3712633014be7b179b554f1f7766a9a7 457 Pfam PF06899 WzyE protein, O-antigen assembly polymerase 1 440 6.8E-260 T 15-10-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 NJ56_08360 0a6db47084a4a4a33fc11665eb375b4c 94 Pfam PF13997 YqjK-like protein 13 85 7.9E-30 T 15-10-2018 IPR025612 YqjK-like protein NJ56_01655 5ee16b376a3244e130c4de46bad0090c 373 Gene3D G3DSA:3.40.50.1980 22 369 1.7E-100 T 15-10-2018 NJ56_01655 5ee16b376a3244e130c4de46bad0090c 373 SUPERFAMILY SSF53807 24 339 9.81E-54 T 15-10-2018 NJ56_01655 5ee16b376a3244e130c4de46bad0090c 373 Pfam PF01497 Periplasmic binding protein 87 313 1.6E-30 T 15-10-2018 IPR002491 ABC transporter periplasmic binding domain NJ56_13045 9afe2cb0595309fbce52d8c18797b1dc 237 Pfam PF02108 Flagellar assembly protein FliH 104 228 6.9E-40 T 15-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE NJ56_13045 9afe2cb0595309fbce52d8c18797b1dc 237 PRINTS PR01003 Flagellar assembly protein FliH signature 85 103 4.0E-79 T 15-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 NJ56_13045 9afe2cb0595309fbce52d8c18797b1dc 237 PRINTS PR01003 Flagellar assembly protein FliH signature 142 164 4.0E-79 T 15-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 NJ56_13045 9afe2cb0595309fbce52d8c18797b1dc 237 PRINTS PR01003 Flagellar assembly protein FliH signature 104 123 4.0E-79 T 15-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 NJ56_13045 9afe2cb0595309fbce52d8c18797b1dc 237 PRINTS PR01003 Flagellar assembly protein FliH signature 62 84 4.0E-79 T 15-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 NJ56_13045 9afe2cb0595309fbce52d8c18797b1dc 237 PRINTS PR01003 Flagellar assembly protein FliH signature 210 235 4.0E-79 T 15-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 NJ56_13045 9afe2cb0595309fbce52d8c18797b1dc 237 PRINTS PR01003 Flagellar assembly protein FliH signature 165 192 4.0E-79 T 15-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 NJ56_13045 9afe2cb0595309fbce52d8c18797b1dc 237 PRINTS PR01003 Flagellar assembly protein FliH signature 8 27 4.0E-79 T 15-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 NJ56_13045 9afe2cb0595309fbce52d8c18797b1dc 237 PRINTS PR01003 Flagellar assembly protein FliH signature 124 141 4.0E-79 T 15-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 NJ56_13045 9afe2cb0595309fbce52d8c18797b1dc 237 PRINTS PR01003 Flagellar assembly protein FliH signature 193 209 4.0E-79 T 15-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 NJ56_06340 d10d3040ccf9376772363b38dffa5ad8 181 Gene3D G3DSA:2.60.40.1090 31 180 2.1E-27 T 15-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 NJ56_06340 d10d3040ccf9376772363b38dffa5ad8 181 Pfam PF00419 Fimbrial protein 33 181 2.3E-15 T 15-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 NJ56_06340 d10d3040ccf9376772363b38dffa5ad8 181 SUPERFAMILY SSF49401 32 181 2.24E-24 T 15-10-2018 IPR008966 Adhesion domain superfamily NJ56_01720 d17895926ebce6b1cb3f4cb8f727f8b9 75 Pfam PF04400 (Na+)-NQR maturation NqrM 23 65 1.5E-21 T 15-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM NJ56_14210 4c9dda324055805a8892e2e7350c22c7 226 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 12 215 1.5E-37 T 15-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 NJ56_14210 4c9dda324055805a8892e2e7350c22c7 226 Pfam PF01914 MarC family integral membrane protein 8 218 7.1E-64 T 15-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 NJ56_01410 f4c99d3db6453ebfc857fe64ad4cef22 259 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 34 259 7.8E-53 T 15-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 NJ56_01410 f4c99d3db6453ebfc857fe64ad4cef22 259 SUPERFAMILY SSF111364 26 259 7.06E-34 T 15-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 NJ56_05230 b31fb134038188fd6567cd0b26c2ebe3 157 TIGRFAM TIGR04366 cupin_WbuC: cupin fold metalloprotein, WbuC family 4 132 3.1E-48 T 15-10-2018 IPR027565 Cupin fold metalloprotein, WbuC family NJ56_05230 b31fb134038188fd6567cd0b26c2ebe3 157 SUPERFAMILY SSF51182 25 121 1.52E-17 T 15-10-2018 IPR011051 RmlC-like cupin domain superfamily NJ56_05230 b31fb134038188fd6567cd0b26c2ebe3 157 Gene3D G3DSA:2.60.120.10 14 128 3.1E-10 T 15-10-2018 IPR014710 RmlC-like jelly roll fold NJ56_03005 8f098e352c75a71996406a1d5f61f9b4 188 Pfam PF01184 GPR1/FUN34/yaaH family 3 178 1.5E-44 T 15-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 NJ56_14770 80abfc5bd7032edba24c95d80872d10c 234 Pfam PF00246 Zinc carboxypeptidase 38 157 7.2E-11 T 15-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 NJ56_14770 80abfc5bd7032edba24c95d80872d10c 234 SUPERFAMILY SSF53187 20 214 1.92E-30 T 15-10-2018 NJ56_14770 80abfc5bd7032edba24c95d80872d10c 234 Gene3D G3DSA:3.40.630.10 17 233 2.5E-51 T 15-10-2018 NJ56_03050 355dec6d8ad2a9a767df88d7ba1ed277 22 Pfam PF08254 Threonine leader peptide 1 22 1.0E-11 T 15-10-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 NJ56_03050 355dec6d8ad2a9a767df88d7ba1ed277 22 Hamap MF_01907 thr operon leader peptide [thrL]. 1 22 12.729 T 15-10-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 NJ56_03050 355dec6d8ad2a9a767df88d7ba1ed277 22 TIGRFAM TIGR02077 thr_lead_pep: thr operon leader peptide 1 22 5.4E-10 T 15-10-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 NJ56_18190 9ca1d79e960ad0c64d01d29dac9fcd0a 327 Pfam PF06834 TraU protein 27 326 4.3E-111 T 15-10-2018 IPR009649 TraU NJ56_13700 cc81c47268904b005bdac88ff6721ed8 115 Gene3D G3DSA:1.20.58.280 14 115 2.5E-36 T 15-10-2018 NJ56_13700 cc81c47268904b005bdac88ff6721ed8 115 SUPERFAMILY SSF46973 17 113 1.2E-33 T 15-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 NJ56_13700 cc81c47268904b005bdac88ff6721ed8 115 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 20 112 5.0E-33 T 15-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 NJ56_13700 cc81c47268904b005bdac88ff6721ed8 115 PIRSF PIRSF000699 10 115 9.0E-38 T 15-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 NJ56_04510 887f914a040cef5bfb456a677131a7f4 78 Pfam PF11660 Protein of unknown function (DUF3262) 1 77 5.5E-26 T 15-10-2018 IPR021676 Protein of unknown function DUF3262 NJ56_04510 887f914a040cef5bfb456a677131a7f4 78 TIGRFAM TIGR03758 conj_TIGR03758: integrating conjugative element protein, PFL_4701 family 2 78 9.4E-24 T 15-10-2018 IPR021676 Protein of unknown function DUF3262 NJ56_14120 1218b1f2e4361866e0ae9f6ad5b08a6e 165 Pfam PF13185 GAF domain 39 146 1.0E-9 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_14120 1218b1f2e4361866e0ae9f6ad5b08a6e 165 SUPERFAMILY SSF55781 2 152 1.47E-40 T 15-10-2018 NJ56_14120 1218b1f2e4361866e0ae9f6ad5b08a6e 165 SMART SM00065 23 161 7.6E-4 T 15-10-2018 IPR003018 GAF domain GO:0005515 NJ56_14120 1218b1f2e4361866e0ae9f6ad5b08a6e 165 Gene3D G3DSA:3.30.450.40 1 165 8.5E-67 T 15-10-2018 IPR029016 GAF-like domain superfamily NJ56_04945 e4e687b1be5158f961162aca26a5963a 510 Pfam PF02646 RmuC family 171 468 3.4E-104 T 15-10-2018 IPR003798 DNA recombination RmuC NJ56_01235 eb69d207ae16c178c2c96bf23e0063ae 51 Pfam PF10689 Protein of unknown function (DUF2496) 2 44 8.4E-25 T 15-10-2018 IPR019630 Protein of unknown function DUF2496, YbaM-related NJ56_10465 5de581c73542c2e4e612f0ad1e506435 117 Pfam PF10941 Protein of unknown function DUF2620 2 116 1.0E-45 T 15-10-2018 IPR021238 Protein of unknown function DUF2620 NJ56_10010 49bc67a166daa3c0f6fdcaca4edfda78 526 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 1 525 6.3E-129 T 15-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 NJ56_10010 49bc67a166daa3c0f6fdcaca4edfda78 526 Pfam PF02652 L-lactate permease 1 522 3.3E-137 T 15-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 NJ56_11030 1504ba888c365540d6ceb415ed2f5a47 102 Pfam PF11907 Domain of unknown function (DUF3427) 7 94 3.7E-7 T 15-10-2018 IPR021835 Protein of unknown function DUF3427 NJ56_17330 a03d81984c4c4e67b0bbe730e550ebd3 135 Hamap MF_01144 UPF0299 membrane protein YohJ [yohJ]. 4 123 23.344 T 15-10-2018 IPR022957 Uncharacterised protein family UPF0299 NJ56_17330 a03d81984c4c4e67b0bbe730e550ebd3 135 Pfam PF03788 LrgA family 23 113 4.5E-32 T 15-10-2018 IPR005538 LrgA/CidA family GO:0016021 NJ56_17690 b191f5f4e3c54a397ea504cd0e663656 139 Pfam PF08308 PEGA domain 44 87 2.2E-7 T 15-10-2018 IPR013229 PEGA NJ56_07505 e175d8d225ea45f324597a5b9a531cca 68 Pfam PF03889 Domain of unknown function 9 45 1.6E-20 T 15-10-2018 IPR005589 Alternative ribosome-rescue factor A GO:0072344 NJ56_06510 ebc3516017e8df4ff713e1f6c9aa621e 196 Pfam PF05229 Spore Coat Protein U domain 27 192 6.6E-15 T 15-10-2018 IPR007893 Spore coat protein U NJ56_00230 eaa546342e63d8a8b16c2cd35faed3e8 241 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 22 229 1.5E-63 T 15-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 NJ56_00230 eaa546342e63d8a8b16c2cd35faed3e8 241 Pfam PF04973 Nicotinamide mononucleotide transporter 23 227 2.2E-54 T 15-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 NJ56_17960 fe2d5810bd6c1c31bf05ba9e9eb70d61 138 Pfam PF00816 H-NS histone family 51 126 5.0E-6 T 15-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 NJ56_06845 401853b08380572acc858b0a4ccaa77e 209 Pfam PF01810 LysE type translocator 18 207 2.0E-48 T 15-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 NJ56_06845 401853b08380572acc858b0a4ccaa77e 209 PIRSF PIRSF006324 4 209 1.3E-52 T 15-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 NJ56_03655 5a1da7b138160e4ccec1e5be5afd316e 358 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 351 1.8E-156 T 15-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 NJ56_03655 5a1da7b138160e4ccec1e5be5afd316e 358 PIRSF PIRSF007313 1 358 1.6E-163 T 15-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 NJ56_09715 969870e0cb9e2438a907cfd67516f73b 282 Pfam PF01148 Cytidylyltransferase family 4 279 2.1E-69 T 15-10-2018 NJ56_09715 969870e0cb9e2438a907cfd67516f73b 282 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 239 265 - T 15-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 NJ56_00430 839b262104e8d850e8536d1e98e8ccc2 68 Pfam PF10725 Protein of unknown function (DUF2517) 4 64 1.6E-36 T 15-10-2018 IPR019663 Uncharacterised protein YbfA NJ56_13880 f8a1892478a4e81965d64ca9e1f98e1f 162 Pfam PF11158 Protein of unknown function (DUF2938) 8 156 2.4E-64 T 15-10-2018 IPR021329 Protein of unknown function DUF2938 NJ56_08595 cdd81927955f01d00806aa84497d33fc 241 Pfam PF07103 Protein of unknown function (DUF1365) 5 234 8.2E-73 T 15-10-2018 IPR010775 Protein of unknown function DUF1365 NJ56_14315 4067b50b2eacedff6431623d33ef0a72 95 Gene3D G3DSA:1.10.443.10 1 94 5.7E-20 T 15-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 NJ56_14315 4067b50b2eacedff6431623d33ef0a72 95 SUPERFAMILY SSF56349 22 88 8.54E-19 T 15-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NJ56_14315 4067b50b2eacedff6431623d33ef0a72 95 Pfam PF00589 Phage integrase family 38 79 8.8E-11 T 15-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NJ56_11975 ff96f1dab1430ff11114942d90bc07e2 59 Pfam PF13973 Domain of unknown function (DUF4222) 8 57 5.9E-16 T 15-10-2018 IPR025317 Protein of unknown function DUF4222 NJ56_02910 74145e904605023b268bfa663f168845 155 Pfam PF12582 Protein of unknown function (DUF3757) 23 144 4.2E-19 T 15-10-2018 IPR022231 Protein of unknown function DUF3757 NJ56_02925 915c6482bb51727391e5e4142fb02083 266 Pfam PF06738 Putative threonine/serine exporter 21 260 4.4E-66 T 15-10-2018 IPR010619 Putative threonine/serine exporter NJ56_04570 c29d1307fc03c99faac25415525b8564 214 TIGRFAM TIGR03748 conj_PilL: integrating conjugative element protein PilL, PFGI-1 class 59 161 5.9E-38 T 15-10-2018 IPR022260 Integrating conjugative element protein PilL, PFGI-1 NJ56_00835 a266772ae25c502e450e0e90145e21e9 408 Pfam PF10129 OpgC protein 30 399 1.1E-62 T 15-10-2018 IPR014550 Uncharacterised conserved protein UCP028704, OpgC NJ56_17650 5e407a379c06029706465ee1b5f69f7d 348 Pfam PF07751 Abi-like protein 25 201 2.2E-12 T 15-10-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like NJ56_11715 5ac9848eafd906e2677cb831600c07a8 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 95 1.8E-22 T 15-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like NJ56_11715 5ac9848eafd906e2677cb831600c07a8 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 19.983 T 15-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 NJ56_13665 550cc0acd82161749f364c2cbfbc44a6 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 179 3.7E-57 T 15-10-2018 IPR018636 Protein of unknown function DUF2058 NJ56_11430 6281453f2f1f5ef15f24ff73121c31e0 268 Pfam PF01925 Sulfite exporter TauE/SafE 14 248 4.7E-46 T 15-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 NJ56_16105 62a6afd7bf0ac32b4e5aecc27f7296c1 159 Pfam PF11046 Transcriptional repressor of hyc and hyp operons 3 145 1.4E-55 T 15-10-2018 IPR021285 Transcription regulator, HycA NJ56_11185 f6f29711412955228040c678dd45f479 185 Pfam PF06042 Nucleotidyltransferase 23 177 1.3E-62 T 15-10-2018 IPR009267 Putative nucleotidyltransferase NJ56_17300 99a2d2d74e9426c337c7bba3cbef31b8 617 Pfam PF05170 AsmA family 3 176 4.0E-18 T 15-10-2018 IPR007844 AsmA NJ56_17300 99a2d2d74e9426c337c7bba3cbef31b8 617 Pfam PF05170 AsmA family 248 511 1.7E-20 T 15-10-2018 IPR007844 AsmA NJ56_06420 3b87317ad1a744b71a07bf0d9b2b7d45 115 Pfam PF07119 Protein of unknown function (DUF1375) 13 76 3.6E-13 T 15-10-2018 IPR010780 Protein of unknown function DUF1375 NJ56_06850 ed809c5ab8d09da7e55df48dcfbc1a87 88 Gene3D G3DSA:3.40.630.30 37 87 1.3E-9 T 15-10-2018 NJ56_06850 ed809c5ab8d09da7e55df48dcfbc1a87 88 SUPERFAMILY SSF55729 46 83 8.58E-10 T 15-10-2018 IPR016181 Acyl-CoA N-acyltransferase NJ56_01085 c2fd109b6887729278a8fa32967b062a 436 SUPERFAMILY SSF53613 38 418 6.7E-44 T 15-10-2018 IPR029056 Ribokinase-like NJ56_01085 c2fd109b6887729278a8fa32967b062a 436 Pfam PF00294 pfkB family carbohydrate kinase 140 296 4.5E-9 T 15-10-2018 IPR011611 Carbohydrate kinase PfkB NJ56_09620 6046df5da0cfb88b91b5658f0741b76d 131 Pfam PF04241 Protein of unknown function (DUF423) 20 106 1.2E-23 T 15-10-2018 IPR006696 Protein of unknown function DUF423 NJ56_18180 4cca0336e9a3a581c710df7154002673 134 TIGRFAM TIGR02744 TrbI_Ftype: type-F conjugative transfer system protein TrbI 27 129 7.0E-34 T 15-10-2018 IPR014115 Type-F conjugative transfer system protein TrbI NJ56_18180 4cca0336e9a3a581c710df7154002673 134 Pfam PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) 26 129 9.3E-35 T 15-10-2018 IPR014115 Type-F conjugative transfer system protein TrbI NJ56_06230 7fda6bb9ccccbd99255b052c98358f41 127 Pfam PF03899 ATP synthase I chain 13 109 5.7E-17 T 15-10-2018 IPR005598 ATP synthase protein I NJ56_13230 a3f5235053e516d6a57aeb4b7db8eff5 71 Pfam PF04606 Ogr/Delta-like zinc finger 3 49 1.1E-19 T 15-10-2018 IPR007684 Zinc finger, Ogr/Delta-type NJ56_12715 7b346b25045e11da0277d798ff672312 168 Pfam PF10777 Inner membrane protein YlaC 1 153 8.2E-70 T 15-10-2018 IPR019713 Inner membrane protein YlaC NJ56_07225 741709b384f6b30d3633063cb0afaa94 307 Pfam PF00892 EamA-like transporter family 166 298 7.6E-7 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_07225 741709b384f6b30d3633063cb0afaa94 307 Pfam PF00892 EamA-like transporter family 4 118 3.2E-7 T 15-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 NJ56_16770 131d84228c3d0bf1a65489026fe06988 541 Pfam PF02470 MlaD protein 283 384 1.1E-12 T 15-10-2018 IPR003399 Mce/MlaD NJ56_16770 131d84228c3d0bf1a65489026fe06988 541 Pfam PF02470 MlaD protein 153 211 5.9E-7 T 15-10-2018 IPR003399 Mce/MlaD NJ56_16770 131d84228c3d0bf1a65489026fe06988 541 Pfam PF02470 MlaD protein 36 127 1.9E-11 T 15-10-2018 IPR003399 Mce/MlaD NJ56_17125 2ab3d023e4ef01ca21d7fa440bac6f79 160 Pfam PF10767 Protein of unknown function (DUF2593) 18 158 8.2E-57 T 15-10-2018 IPR019703 Protein of unknown function DUF2593 NJ56_14110 76bf8cf86277b64c875e4dbc08936290 876 Pfam PF02470 MlaD protein 745 806 2.9E-8 T 15-10-2018 IPR003399 Mce/MlaD NJ56_14110 76bf8cf86277b64c875e4dbc08936290 876 Pfam PF02470 MlaD protein 280 348 1.2E-7 T 15-10-2018 IPR003399 Mce/MlaD NJ56_14110 76bf8cf86277b64c875e4dbc08936290 876 Pfam PF02470 MlaD protein 633 722 3.3E-9 T 15-10-2018 IPR003399 Mce/MlaD NJ56_14110 76bf8cf86277b64c875e4dbc08936290 876 Pfam PF02470 MlaD protein 394 455 2.2E-6 T 15-10-2018 IPR003399 Mce/MlaD NJ56_14110 76bf8cf86277b64c875e4dbc08936290 876 Pfam PF02470 MlaD protein 46 137 4.3E-16 T 15-10-2018 IPR003399 Mce/MlaD NJ56_05025 f973d709462af78fd543fb184b3f09f2 694 Pfam PF16967 E-set like domain 189 256 6.1E-19 T 15-10-2018 IPR032636 Pilus assembly protein, E-set like domain NJ56_14985 dd5f41039f1355a5e2afdb5267baf5a7 112 Gene3D G3DSA:3.90.79.10 40 110 6.3E-5 T 15-10-2018 NJ56_12115 51c05caff273186aa4c2a93e56c1c6df 118 Pfam PF10618 Phage tail tube protein 1 115 4.3E-40 T 15-10-2018 IPR019596 Bacteriophage Mu, GpM, tail tube NJ56_10180 da136d0fcd7d5c587b94f6aebc72feed 2092 Pfam PF05729 NACHT domain 282 465 2.7E-7 T 15-10-2018 IPR007111 NACHT nucleoside triphosphatase NJ56_04595 7d3e4296ab31e06796701f5415d7c2a8 401 Pfam PF13730 Helix-turn-helix domain 56 116 4.9E-12 T 15-10-2018 NJ56_09360 456507679049acfbc75e141850e66048 312 Pfam PF02470 MlaD protein 48 115 1.1E-11 T 15-10-2018 IPR003399 Mce/MlaD NJ56_04950 8b16164278956a502f75d03b3685448a 176 Pfam PF09335 SNARE associated Golgi protein 41 164 3.4E-13 T 15-10-2018 IPR032816 SNARE associated Golgi protein NJ56_13340 68e33b4907b7fab0c5a2b6519f23aed8 69 Pfam PF16080 Bacteriophage holin family HP1 2 55 2.5E-9 T 15-10-2018 IPR032118 Bacteriophage holin HP1 family NJ56_03510 bb30a127e7e09ce16e5112de767fce26 69 Gene3D G3DSA:1.10.238.160 11 67 2.9E-15 T 15-10-2018 NJ56_03510 bb30a127e7e09ce16e5112de767fce26 69 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 15 59 3.3E-9 T 15-10-2018 IPR010260 DNA-binding transcriptional activator AlpA NJ56_05970 80eabb362e13f86df290f9457695e2e1 157 Pfam PF12098 Protein of unknown function (DUF3574) 56 157 1.4E-38 T 15-10-2018 IPR021957 Protein of unknown function DUF3574 NJ56_13410 d67a33cd2f24d517fde08b17c4b46b7b 169 Pfam PF06892 Phage regulatory protein CII (CP76) 4 160 4.8E-62 T 15-10-2018 IPR009679 Bacteriophage 186, CII NJ56_03330 d40f0cf27e6cb0dcab2c2ed554c9fb56 256 Pfam PF03609 PTS system sorbose-specific iic component 3 232 1.5E-68 T 15-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 NJ56_16555 a621c4292049c6704fda6e368f944927 174 Pfam PF02620 Uncharacterized ACR, COG1399 62 171 5.0E-16 T 15-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD NJ56_01795 38d9c1f2106287cc3430eb0c90273c62 239 SUPERFAMILY SSF53335 78 185 6.76E-14 T 15-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NJ56_01795 38d9c1f2106287cc3430eb0c90273c62 239 Pfam PF08241 Methyltransferase domain 77 125 1.1E-8 T 15-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 NJ56_01795 38d9c1f2106287cc3430eb0c90273c62 239 Gene3D G3DSA:3.40.50.150 53 184 5.9E-12 T 15-10-2018 NJ56_17580 b568cac762b437a2a827a8e1f9cb790b 367 Pfam PF05076 Suppressor of fused protein (SUFU) 201 363 1.9E-20 T 15-10-2018 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 NJ56_02240 d434be1035fa59e0c7f87ab7309c4cd4 222 ProDom PD038222 INVASION PLASMID OXYGEN-REGULATED III SECRETION MXIN TYPE SYSTEM PATHWAY ORGB 37 186 1.0E-16 T 15-10-2018 NJ56_00910 a8c4635129b8cfb090e870ab0c151d0d 28 Pfam PF13683 Integrase core domain 2 17 8.7E-7 T 15-10-2018 IPR001584 Integrase, catalytic core GO:0015074 NJ56_10425 20205a5f59fad1a682e48ca42cebf475 165 Gene3D G3DSA:2.60.40.2550 64 157 2.3E-5 T 15-10-2018 NJ56_07255 19b7a9bd60bd7ce6c6105f088559dbf7 200 Pfam PF01810 LysE type translocator 16 190 3.4E-16 T 15-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 NJ56_04025 6009348de6d91685ca5aead5b7199614 217 Pfam PF06551 Protein of unknown function (DUF1120) 34 129 3.6E-10 T 15-10-2018 IPR010546 Protein of unknown function DUF1120 NJ56_17705 d5cd52ed9711c48947caad911cc6f53b 527 Pfam PF06834 TraU protein 233 524 5.3E-93 T 15-10-2018 IPR009649 TraU NJ56_10040 4bb0f38da183bab6fe37ea42f8765af0 317 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 309 1.8E-36 T 15-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 NJ56_11295 edb12d3b37b090bd4ea57fb2423df144 174 SUPERFAMILY SSF81342 3 174 2.04E-27 T 15-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 NJ56_11295 edb12d3b37b090bd4ea57fb2423df144 174 Pfam PF01292 Prokaryotic cytochrome b561 4 173 5.4E-21 T 15-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 NJ56_04455 8b9ec771e5f2c8d18fda1f9b3a3620ee 135 Pfam PF07511 Protein of unknown function (DUF1525) 22 130 1.1E-38 T 15-10-2018 IPR011090 Integrating conjugative element protein, PFL4709 NJ56_04455 8b9ec771e5f2c8d18fda1f9b3a3620ee 135 TIGRFAM TIGR03757 conj_TIGR03757: integrating conjugative element protein, PFL_4709 family 21 130 1.4E-42 T 15-10-2018 IPR011090 Integrating conjugative element protein, PFL4709 NJ56_11930 795a91eb205ec669b3b3df9d83fd0d74 178 SUPERFAMILY SSF109604 2 173 1.1E-37 T 15-10-2018 NJ56_11930 795a91eb205ec669b3b3df9d83fd0d74 178 Gene3D G3DSA:1.10.3210.10 1 176 8.0E-54 T 15-10-2018 NJ56_08055 56f5852a837ead7a3b5f43d23e288f71 653 Pfam PF04632 Fusaric acid resistance protein family 10 650 4.9E-156 T 15-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 NJ56_08055 56f5852a837ead7a3b5f43d23e288f71 653 Hamap MF_01545 p-hydroxybenzoic acid efflux pump subunit AaeB [aaeB]. 2 652 53.937 T 15-10-2018 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB GO:0005886|GO:0046942 NJ56_15220 d627523559843dc7fc6a6d15333b1f5d 101 Pfam PF06305 Lipopolysaccharide assembly protein A domain 23 84 3.6E-19 T 15-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 NJ56_15220 d627523559843dc7fc6a6d15333b1f5d 101 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 94 21.485 T 15-10-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 NJ56_07060 ca0cf2bce92e8ecc0080ee80cb145a2e 714 Pfam PF07095 Intracellular growth attenuator protein IgaA 1 708 0.0 T 15-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 NJ56_07060 ca0cf2bce92e8ecc0080ee80cb145a2e 714 ProDom PD147088 MEMBRANE INNER TRANSMEMBRANE IGAA HOMOLOG DEHYDROGENASE GROWTH ATTENUATOR INTRACELLULAR GENOME 1 703 0.0 T 15-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 NJ56_01280 579be5429774913806ff9a89d37e7fd8 122 Pfam PF10757 Biofilm formation regulator YbaJ 1 117 1.0E-64 T 15-10-2018 IPR019693 Biofilm formation regulator YbaJ NJ56_17675 e9accad7cb3579bd0a4c12698cef34ae 1217 Pfam PF07916 TraG-like protein, N-terminal region 23 482 1.2E-38 T 15-10-2018 IPR012931 TraG-like, N-terminal NJ56_08555 1d7531d0182c69e0443f055a38cfb8d1 51 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 1 46 1.7E-15 T 15-10-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 NJ56_05275 5859b458d8df83ee1f26ce2ce4663edf 66 Pfam PF13627 Prokaryotic lipoprotein-attachment site 9 29 1.8E-8 T 15-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site NJ56_03570 1ac9cbc33dbd931fc5ecad86f8625a22 224 Pfam PF10053 Uncharacterized conserved protein (DUF2290) 29 220 6.1E-35 T 15-10-2018 IPR018742 Protein of unknown function DUF2290 NJ56_13020 e9960fd552309db54d6dec4dece96e26 156 Pfam PF03748 Flagellar basal body-associated protein FliL 54 154 3.6E-20 T 15-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 NJ56_17645 74167c21afc282a4d03872f121470e40 79 Pfam PF13610 DDE domain 17 70 2.3E-10 T 15-10-2018 IPR032874 DDE domain NJ56_13310 9274f03a529b3db1bc91580342df9559 343 Pfam PF14350 Beta protein 6 339 3.8E-61 T 15-10-2018 IPR025683 Protein beta NJ56_05485 f2e021a825fdc903dd3d68a5ca506618 112 Pfam PF04219 Protein of unknown function, DUF 10 98 1.6E-39 T 15-10-2018 IPR007335 Protein of unknown function DUF413 NJ56_14580 53cff28b5b48dab7c72d7184876ec116 79 Pfam PF06945 Protein of unknown function (DUF1289) 12 57 1.9E-18 T 15-10-2018 IPR010710 Protein of unknown function DUF1289 NJ56_05655 dcc517ee2995230b5a5d6a2230f7ec03 413 SUPERFAMILY SSF56112 199 284 3.52E-5 T 15-10-2018 IPR011009 Protein kinase-like domain superfamily NJ56_03540 c6bca9b75e0740c687c994eae062ce79 1710 SUPERFAMILY SSF52540 274 479 4.85E-7 T 15-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase NJ56_03405 dfcc83dd6fbe040df27950c4939f6047 131 Pfam PF13338 Transcriptional regulator, AbiEi antitoxin 11 55 1.2E-6 T 15-10-2018 IPR025159 Transcriptional regulator, AbiEi antitoxin NJ56_11935 ff4611c2bb4bdf756bee4093f2a3d9af 275 Pfam PF10065 Uncharacterized conserved protein (DUF2303) 8 273 2.5E-88 T 15-10-2018 IPR019276 Protein of unkown function DUF2303 NJ56_14040 adc12de46588c0e6df15d64b23ef0911 113 Pfam PF10709 Protein of unknown function (DUF2511) 25 111 5.5E-38 T 15-10-2018 IPR019648 Protein of unknown function DUF2511 NJ56_01930 d5cda5201b7eb8516ed83c4c50b97efb 263 Pfam PF01578 Cytochrome C assembly protein 37 260 1.0E-41 T 15-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 NJ56_02855 5c8b8d6da1e1fc4bd875c05d041ad813 255 Pfam PF09335 SNARE associated Golgi protein 36 159 3.8E-20 T 15-10-2018 IPR032816 SNARE associated Golgi protein NJ56_11520 9a177f59b7855a7045e6ff6da82955f9 220 Pfam PF09335 SNARE associated Golgi protein 49 176 2.2E-25 T 15-10-2018 IPR032816 SNARE associated Golgi protein NJ56_07010 b32e25514b92812c54aced90e57cbae2 326 Gene3D G3DSA:1.20.910.10 91 309 9.5E-14 T 15-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 NJ56_04435 b3b1da2fc9f5ca9cd0a4a37d57b8cfd0 501 Pfam PF07916 TraG-like protein, N-terminal region 8 476 7.1E-77 T 15-10-2018 IPR012931 TraG-like, N-terminal