locus-tag class description BD65_1 PF01433 Peptidase family M1 domain BD65_1 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BD65_1 PF11940 Domain of unknown function (DUF3458) Ig-like fold BD65_10 PF04957 Ribosome modulation factor BD65_100 PF00939 Sodium:sulfate symporter transmembrane region BD65_1000 PF00528 Binding-protein-dependent transport system inner membrane component BD65_1001 PF00528 Binding-protein-dependent transport system inner membrane component BD65_1002 PF13089 Polyphosphate kinase N-terminal domain BD65_1002 PF17941 Polyphosphate kinase C-terminal domain 1 BD65_1002 PF13090 Polyphosphate kinase C-terminal domain 2 BD65_1002 PF02503 Polyphosphate kinase middle domain BD65_1003 PF02541 Ppx/GppA phosphatase family BD65_1005 PF00571 CBS domain BD65_1005 PF01769 Divalent cation transporter BD65_1005 PF03448 MgtE intracellular N domain BD65_1006 PF00012 Hsp70 protein BD65_1008 PF02753 Pili assembly chaperone PapD, C-terminal domain BD65_1008 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BD65_1009 PF13953 PapC C-terminal domain BD65_1009 PF13954 PapC N-terminal domain BD65_1009 PF00577 Outer membrane usher protein BD65_101 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) BD65_101 PF00413 Matrixin BD65_101 PF08548 Peptidase M10 serralysin C terminal BD65_1011 PF13533 Biotin-lipoyl like BD65_1012 PF00873 AcrB/AcrD/AcrF family BD65_1013 PF00873 AcrB/AcrD/AcrF family BD65_1014 PF07690 Major Facilitator Superfamily BD65_1015 PF00512 His Kinase A (phospho-acceptor) domain BD65_1015 PF00672 HAMP domain BD65_1015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_1016 PF00486 Transcriptional regulatory protein, C terminal BD65_1016 PF00072 Response regulator receiver domain BD65_1017 PF07411 Domain of unknown function (DUF1508) BD65_1019 PF00781 Diacylglycerol kinase catalytic domain BD65_102 PF02974 Protease inhibitor Inh BD65_1022 PF08543 Phosphomethylpyrimidine kinase BD65_1024 PF02540 NAD synthase BD65_1024 PF00958 GMP synthase C terminal domain BD65_1024 PF00117 Glutamine amidotransferase class-I BD65_1025 PF00478 IMP dehydrogenase / GMP reductase domain BD65_1025 PF00571 CBS domain BD65_1026 PF13742 OB-fold nucleic acid binding domain BD65_1026 PF02601 Exonuclease VII, large subunit BD65_1027 PF07191 zinc-ribbons BD65_1028 PF01926 50S ribosome-binding GTPase BD65_1028 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BD65_1029 PF13360 PQQ-like domain BD65_103 PF00005 ABC transporter BD65_103 PF00664 ABC transporter transmembrane region BD65_1030 PF09976 Tetratricopeptide repeat-like domain BD65_1031 PF03129 Anticodon binding domain BD65_1031 PF13393 Histidyl-tRNA synthetase BD65_1032 PF04551 GcpE protein BD65_1033 PF13464 Domain of unknown function (DUF4115) BD65_1035 PF04055 Radical SAM superfamily BD65_1036 PF00334 Nucleoside diphosphate kinase BD65_1037 PF00030 Beta/Gamma crystallin BD65_1038 PF00912 Transglycosylase BD65_1038 PF06832 Penicillin-Binding Protein C-terminus Family BD65_1038 PF00905 Penicillin binding protein transpeptidase domain BD65_1039 PF07678 A-macroglobulin TED domain BD65_1039 PF00207 Alpha-2-macroglobulin family BD65_1039 PF17962 Bacterial macroglobulin domain 6 BD65_1039 PF07703 Alpha-2-macroglobulin bait region domain BD65_1039 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BD65_1039 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BD65_1039 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BD65_1039 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BD65_1039 PF01835 MG2 domain BD65_104 PF00529 HlyD membrane-fusion protein of T1SS BD65_1040 PF07179 SseB protein N-terminal domain BD65_1040 PF14581 SseB protein C-terminal domain BD65_1041 PF12404 Peptidase BD65_1041 PF00883 Cytosol aminopeptidase family, catalytic domain BD65_1042 PF04384 Iron-sulphur cluster assembly BD65_1043 PF00111 2Fe-2S iron-sulfur cluster binding domain BD65_1044 PF00012 Hsp70 protein BD65_1045 PF00226 DnaJ domain BD65_1045 PF07743 HSCB C-terminal oligomerisation domain BD65_1046 PF01521 Iron-sulphur cluster biosynthesis BD65_1047 PF01592 NifU-like N terminal domain BD65_1048 PF00266 Aminotransferase class-V BD65_1049 PF02082 Transcriptional regulator BD65_105 PF02321 Outer membrane efflux protein BD65_1050 PF00588 SpoU rRNA Methylase family BD65_1051 PF00459 Inositol monophosphatase family BD65_1052 PF03824 High-affinity nickel-transport protein BD65_1053 PF06226 Protein of unknown function (DUF1007) BD65_1054 PF12832 MFS_1 like family BD65_1055 PF00874 PRD domain BD65_1056 PF00464 Serine hydroxymethyltransferase BD65_1057 PF00970 Oxidoreductase FAD-binding domain BD65_1057 PF00042 Globin BD65_1057 PF00175 Oxidoreductase NAD-binding domain BD65_1058 PF14502 Helix-turn-helix domain BD65_1058 PF14503 YhfZ C-terminal domain BD65_1060 PF01168 Alanine racemase, N-terminal domain BD65_1061 PF02126 Phosphotriesterase family BD65_1062 PF10941 Protein of unknown function DUF2620 BD65_1063 PF10797 Protein of unknown function BD65_1064 PF00543 Nitrogen regulatory protein P-II BD65_1065 PF00795 Carbon-nitrogen hydrolase BD65_1065 PF02540 NAD synthase BD65_1066 PF00072 Response regulator receiver domain BD65_1066 PF00158 Sigma-54 interaction domain BD65_1067 PF13942 YfhG lipoprotein BD65_1068 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_1068 PF00512 His Kinase A (phospho-acceptor) domain BD65_107 PF01292 Prokaryotic cytochrome b561 BD65_1070 PF02769 AIR synthase related protein, C-terminal domain BD65_1070 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BD65_1070 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BD65_1071 PF01464 Transglycosylase SLT domain BD65_1071 PF00497 Bacterial extracellular solute-binding proteins, family 3 BD65_1072 PF14437 MafB19-like deaminase BD65_1075 PF01380 SIS domain BD65_1076 PF01418 Helix-turn-helix domain, rpiR family BD65_1076 PF01380 SIS domain BD65_1077 PF12838 4Fe-4S dicluster domain BD65_1078 PF01648 4'-phosphopantetheinyl transferase superfamily BD65_1079 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BD65_108 PF00174 Oxidoreductase molybdopterin binding domain BD65_1080 PF02565 Recombination protein O C terminal BD65_1080 PF11967 Recombination protein O N terminal BD65_1081 PF07650 KH domain BD65_1081 PF01926 50S ribosome-binding GTPase BD65_1082 PF14622 Ribonuclease-III-like BD65_1082 PF00035 Double-stranded RNA binding motif BD65_1083 PF10502 Signal peptidase, peptidase S26 BD65_1084 PF00679 Elongation factor G C-terminus BD65_1084 PF00009 Elongation factor Tu GTP binding domain BD65_1084 PF03144 Elongation factor Tu domain 2 BD65_1084 PF06421 GTP-binding protein LepA C-terminus BD65_1086 PF17188 MucB/RseB C-terminal domain BD65_1086 PF03888 MucB/RseB N-terminal domain BD65_1087 PF03873 Anti sigma-E protein RseA, C-terminal domain BD65_1087 PF03872 Anti sigma-E protein RseA, N-terminal domain BD65_1088 PF04542 Sigma-70 region 2 BD65_1088 PF08281 Sigma-70, region 4 BD65_1089 PF00890 FAD binding domain BD65_1089 PF02910 Fumarate reductase flavoprotein C-term BD65_1090 PF05175 Methyltransferase small domain BD65_1091 PF00271 Helicase conserved C-terminal domain BD65_1091 PF00270 DEAD/DEAH box helicase BD65_1092 PF12796 Ankyrin repeats (3 copies) BD65_1094 PF01228 Glycine radical BD65_1095 PF03167 Uracil DNA glycosylase superfamily BD65_1096 PF01025 GrpE BD65_1097 PF01513 ATP-NAD kinase BD65_1098 PF02463 RecF/RecN/SMC N terminal domain BD65_1099 PF04355 SmpA / OmlA family BD65_11 PF07977 FabA-like domain BD65_1100 PF03658 RnfH family Ubiquitin BD65_1101 PF03364 Polyketide cyclase / dehydrase and lipid transport BD65_1102 PF01668 SmpB protein BD65_1103 PF00589 Phage integrase family BD65_1103 PF13356 Arm DNA-binding domain BD65_1104 PF14130 Domain of unknown function (DUF4297) BD65_1104 PF08878 Domain of unknown function (DUF1837) BD65_1105 PF00271 Helicase conserved C-terminal domain BD65_1106 PF04606 Ogr/Delta-like zinc finger BD65_111 PF02311 AraC-like ligand binding domain BD65_111 PF12833 Helix-turn-helix domain BD65_1113 PF17345 Family of unknown function (DUF5375) BD65_1115 PF00589 Phage integrase family BD65_1115 PF13356 Arm DNA-binding domain BD65_1118 PF01527 Transposase BD65_1119 PF00571 CBS domain BD65_1119 PF01380 SIS domain BD65_1120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BD65_1120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BD65_1122 PF02653 Branched-chain amino acid transport system / permease component BD65_1123 PF00005 ABC transporter BD65_1125 PF00561 alpha/beta hydrolase fold BD65_1126 PF03466 LysR substrate binding domain BD65_1126 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1127 PF02652 L-lactate permease BD65_1128 PF01070 FMN-dependent dehydrogenase BD65_1129 PF06039 Malate:quinone oxidoreductase (Mqo) BD65_113 PF02562 PhoH-like protein BD65_1133 PF00313 'Cold-shock' DNA-binding domain BD65_1135 PF06711 Protein of unknown function (DUF1198) BD65_1136 PF09400 Protein of unknown function (DUF2002) BD65_1139 PF07972 NrdI Flavodoxin like BD65_114 PF01699 Sodium/calcium exchanger protein BD65_1140 PF08343 Ribonucleotide reductase N-terminal BD65_1140 PF00317 Ribonucleotide reductase, all-alpha domain BD65_1140 PF02867 Ribonucleotide reductase, barrel domain BD65_1141 PF00268 Ribonucleotide reductase, small chain BD65_1142 PF00005 ABC transporter BD65_1142 PF00571 CBS domain BD65_1143 PF00528 Binding-protein-dependent transport system inner membrane component BD65_1144 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BD65_1147 PF01047 MarR family BD65_1149 PF00529 HlyD membrane-fusion protein of T1SS BD65_1149 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BD65_115 PF04954 Siderophore-interacting protein BD65_115 PF08021 Siderophore-interacting FAD-binding domain BD65_1150 PF07690 Major Facilitator Superfamily BD65_1151 PF00588 SpoU rRNA Methylase family BD65_1151 PF08032 RNA 2'-O ribose methyltransferase substrate binding BD65_1152 PF00085 Thioredoxin BD65_1154 PF13607 Succinyl-CoA ligase like flavodoxin domain BD65_1154 PF13380 CoA binding domain BD65_1154 PF00583 Acetyltransferase (GNAT) family BD65_1155 PF13091 PLD-like domain BD65_1156 PF10043 Predicted periplasmic lipoprotein (DUF2279) BD65_116 PF00672 HAMP domain BD65_116 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_116 PF07730 Histidine kinase BD65_116 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BD65_1162 PF09383 NIL domain BD65_1162 PF00005 ABC transporter BD65_1163 PF00528 Binding-protein-dependent transport system inner membrane component BD65_1164 PF03180 NLPA lipoprotein BD65_1165 PF16358 RcsF lipoprotein BD65_1166 PF18389 TrmO C-terminal domain BD65_1166 PF01980 tRNA-methyltransferase O BD65_1167 PF04073 Aminoacyl-tRNA editing domain BD65_1167 PF03129 Anticodon binding domain BD65_1167 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BD65_1168 PF17185 NlpE C-terminal OB domain BD65_1168 PF04170 NlpE N-terminal domain BD65_1169 PF00472 RF-1 domain BD65_1170 PF07152 YaeQ protein BD65_1171 PF06786 Uncharacterised protein family (UPF0253) BD65_1172 PF07073 Modulator of Rho-dependent transcription termination (ROF) BD65_1173 PF00034 Cytochrome c BD65_1174 PF11734 TilS substrate C-terminal domain BD65_1174 PF09179 TilS substrate binding domain BD65_1174 PF01171 PP-loop family BD65_1175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BD65_1179 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BD65_118 PF02322 Cytochrome bd terminal oxidase subunit II BD65_1180 PF07733 Bacterial DNA polymerase III alpha NTPase domain BD65_1180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BD65_1180 PF14579 Helix-hairpin-helix motif BD65_1180 PF02811 PHP domain BD65_1180 PF01336 OB-fold nucleic acid binding domain BD65_1181 PF01351 Ribonuclease HII BD65_1182 PF02684 Lipid-A-disaccharide synthetase BD65_1183 PF00132 Bacterial transferase hexapeptide (six repeats) BD65_1183 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BD65_1184 PF07977 FabA-like domain BD65_1185 PF00132 Bacterial transferase hexapeptide (six repeats) BD65_1185 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BD65_1186 PF03938 Outer membrane protein (OmpH-like) BD65_1187 PF07244 Surface antigen variable number repeat BD65_1187 PF01103 Surface antigen BD65_1188 PF02163 Peptidase family M50 BD65_1188 PF17820 PDZ domain BD65_119 PF01654 Cytochrome bd terminal oxidase subunit I BD65_1190 PF01255 Putative undecaprenyl diphosphate synthase BD65_1191 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BD65_1191 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BD65_1191 PF13288 DXP reductoisomerase C-terminal domain BD65_1192 PF01765 Ribosome recycling factor BD65_1193 PF00696 Amino acid kinase family BD65_1194 PF00889 Elongation factor TS BD65_1195 PF00318 Ribosomal protein S2 BD65_1196 PF00557 Metallopeptidase family M24 BD65_1197 PF08335 GlnD PII-uridylyltransferase BD65_1197 PF01909 Nucleotidyltransferase domain BD65_1197 PF01966 HD domain BD65_1197 PF01842 ACT domain BD65_1198 PF14602 Hexapeptide repeat of succinyl-transferase BD65_1198 PF00132 Bacterial transferase hexapeptide (six repeats) BD65_1198 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BD65_1199 PF11944 Protein of unknown function (DUF3461) BD65_12 PF05362 Lon protease (S16) C-terminal proteolytic domain BD65_12 PF13654 AAA domain BD65_120 PF00392 Bacterial regulatory proteins, gntR family BD65_120 PF00155 Aminotransferase class I and II BD65_1200 PF00258 Flavodoxin BD65_1201 PF00849 RNA pseudouridylate synthase BD65_1202 PF04287 tRNA pseudouridine synthase C BD65_1203 PF07348 Syd protein (SUKH-2) BD65_1204 PF14489 QueF-like protein BD65_1204 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BD65_1205 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BD65_1205 PF03641 Possible lysine decarboxylase BD65_1205 PF11892 Domain of unknown function (DUF3412) BD65_1206 PF01367 5'-3' exonuclease, C-terminal SAM fold BD65_1206 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BD65_1207 PF18125 RlmM ferredoxin-like domain BD65_1207 PF01728 FtsJ-like methyltransferase BD65_1208 PF04241 Protein of unknown function (DUF423) BD65_1209 PF03466 LysR substrate binding domain BD65_1209 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_121 PF00202 Aminotransferase class-III BD65_1210 PF00266 Aminotransferase class-V BD65_1211 PF02657 Fe-S metabolism associated domain BD65_1212 PF00899 ThiF family BD65_1213 PF03562 MltA specific insert domain BD65_1213 PF06725 3D domain BD65_1217 PF11741 AMIN domain BD65_1217 PF01520 N-acetylmuramoyl-L-alanine amidase BD65_1218 PF00696 Amino acid kinase family BD65_1218 PF00583 Acetyltransferase (GNAT) family BD65_1219 PF13538 UvrD-like helicase C-terminal domain BD65_122 PF04958 Arginine N-succinyltransferase beta subunit BD65_1220 PF12705 PD-(D/E)XK nuclease superfamily BD65_1220 PF00580 UvrD/REP helicase N-terminal domain BD65_1220 PF13361 UvrD-like helicase C-terminal domain BD65_1221 PF05193 Peptidase M16 inactive domain BD65_1221 PF00675 Insulinase (Peptidase family M16) BD65_1221 PF16187 Middle or third domain of peptidase_M16 BD65_1222 PF17946 RecC C-terminal domain BD65_1225 PF00114 Pilin (bacterial filament) BD65_1225 PF07963 Prokaryotic N-terminal methylation motif BD65_1226 PF00303 Thymidylate synthase BD65_1227 PF01790 Prolipoprotein diacylglyceryl transferase BD65_1228 PF01590 GAF domain BD65_1228 PF05524 PEP-utilising enzyme, N-terminal BD65_1228 PF00391 PEP-utilising enzyme, mobile domain BD65_1228 PF02896 PEP-utilising enzyme, TIM barrel domain BD65_1229 PF00293 NUDIX domain BD65_123 PF00171 Aldehyde dehydrogenase family BD65_1230 PF02976 DNA mismatch repair enzyme MutH BD65_1231 PF03741 Integral membrane protein TerC family BD65_1232 PF00248 Aldo/keto reductase family BD65_1233 PF07690 Major Facilitator Superfamily BD65_1234 PF01553 Acyltransferase BD65_1234 PF00501 AMP-binding enzyme BD65_1234 PF13193 AMP-binding enzyme C-terminal domain BD65_1235 PF00356 Bacterial regulatory proteins, lacI family BD65_1236 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BD65_1236 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BD65_1237 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1237 PF03466 LysR substrate binding domain BD65_1238 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1238 PF03466 LysR substrate binding domain BD65_124 PF04996 Succinylarginine dihydrolase BD65_1246 PF11612 Type II secretion system (T2SS), protein J BD65_1246 PF07963 Prokaryotic N-terminal methylation motif BD65_1247 PF07963 Prokaryotic N-terminal methylation motif BD65_1247 PF02501 Type II secretion system (T2SS), protein I BD65_1249 PF07963 Prokaryotic N-terminal methylation motif BD65_1249 PF08334 Type II secretion system (T2SS), protein G BD65_125 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BD65_1250 PF00482 Type II secretion system (T2SS), protein F BD65_1251 PF00437 Type II/IV secretion system protein BD65_1252 PF03958 Bacterial type II/III secretion system short domain BD65_1252 PF00263 Bacterial type II and III secretion system protein BD65_1259 PF00005 ABC transporter BD65_126 PF00267 Gram-negative porin BD65_1260 PF02405 Permease MlaE BD65_1262 PF01336 OB-fold nucleic acid binding domain BD65_1262 PF00152 tRNA synthetases class II (D, K and N) BD65_1263 PF00472 RF-1 domain BD65_1263 PF03462 PCRF domain BD65_1264 PF01368 DHH family BD65_1264 PF17768 RecJ OB domain BD65_1264 PF02272 DHHA1 domain BD65_1265 PF10411 Disulfide bond isomerase protein N-terminus BD65_1265 PF13098 Thioredoxin-like domain BD65_1266 PF02899 Phage integrase, N-terminal SAM-like domain BD65_1266 PF00589 Phage integrase family BD65_1267 PF00258 Flavodoxin BD65_1268 PF07254 Membrane-bound toxin component of toxin-antitoxin system BD65_1269 PF03937 Flavinator of succinate dehydrogenase BD65_1270 PF01571 Aminomethyltransferase folate-binding domain BD65_1271 PF03006 Haemolysin-III related BD65_1275 PF02347 Glycine cleavage system P-protein BD65_1276 PF01597 Glycine cleavage H-protein BD65_1277 PF01571 Aminomethyltransferase folate-binding domain BD65_1277 PF08669 Glycine cleavage T-protein C-terminal barrel domain BD65_1278 PF01494 FAD binding domain BD65_1279 PF01494 FAD binding domain BD65_128 PF01979 Amidohydrolase family BD65_1280 PF00557 Metallopeptidase family M24 BD65_1280 PF05195 Aminopeptidase P, N-terminal domain BD65_1281 PF03695 Uncharacterised protein family (UPF0149) BD65_1282 PF05164 Cell division protein ZapA BD65_1283 PF01812 5-formyltetrahydrofolate cyclo-ligase family BD65_1284 PF01842 ACT domain BD65_1284 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BD65_1284 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BD65_1285 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BD65_1286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1286 PF03466 LysR substrate binding domain BD65_1287 PF04402 Protein of unknown function (DUF541) BD65_1288 PF01810 LysE type translocator BD65_1289 PF00924 Mechanosensitive ion channel BD65_1289 PF05552 Conserved TM helix BD65_129 PF07702 UTRA domain BD65_129 PF00392 Bacterial regulatory proteins, gntR family BD65_1290 PF01116 Fructose-bisphosphate aldolase class-II BD65_1291 PF00162 Phosphoglycerate kinase BD65_1292 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BD65_1292 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BD65_1293 PF02780 Transketolase, C-terminal domain BD65_1293 PF00456 Transketolase, thiamine diphosphate binding domain BD65_1293 PF02779 Transketolase, pyrimidine binding domain BD65_1296 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BD65_1296 PF17810 Arginine decarboxylase helical bundle domain BD65_1296 PF17944 Arginine decarboxylase C-terminal helical extension BD65_1297 PF02773 S-adenosylmethionine synthetase, C-terminal domain BD65_1297 PF02772 S-adenosylmethionine synthetase, central domain BD65_1297 PF00438 S-adenosylmethionine synthetase, N-terminal domain BD65_1299 PF04143 Sulphur transport BD65_13 PF17414 MatP C-terminal ribbon-helix-helix domain BD65_13 PF06303 MatP N-terminal domain BD65_130 PF01979 Amidohydrolase family BD65_1301 PF17283 SprT-like zinc ribbon domain BD65_1301 PF10263 SprT-like family BD65_1302 PF04231 Endonuclease I BD65_1303 PF04452 RNA methyltransferase BD65_1304 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BD65_1304 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BD65_1305 PF02622 Uncharacterized ACR, COG1678 BD65_1307 PF03652 Holliday junction resolvase BD65_1308 PF00795 Carbon-nitrogen hydrolase BD65_1309 PF04371 Porphyromonas-type peptidyl-arginine deiminase BD65_131 PF05962 HutD BD65_1310 PF00437 Type II/IV secretion system protein BD65_1311 PF01168 Alanine racemase, N-terminal domain BD65_1312 PF14748 Pyrroline-5-carboxylate reductase dimerisation BD65_1312 PF03807 NADP oxidoreductase coenzyme F420-dependent BD65_1313 PF02325 YGGT family BD65_1314 PF02594 Uncharacterised ACR, YggU family COG1872 BD65_1315 PF01725 Ham1 family BD65_1316 PF04055 Radical SAM superfamily BD65_1316 PF06969 HemN C-terminal domain BD65_1317 PF11101 Protein of unknown function (DUF2884) BD65_1318 PF04960 Glutaminase BD65_1319 PF04320 Protein with unknown function (DUF469) BD65_132 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_132 PF03466 LysR substrate binding domain BD65_1320 PF02390 Putative methyltransferase BD65_1321 PF00730 HhH-GPD superfamily base excision DNA repair protein BD65_1321 PF10576 Iron-sulfur binding domain of endonuclease III BD65_1321 PF00633 Helix-hairpin-helix motif BD65_1321 PF14815 NUDIX domain BD65_1322 PF04362 Bacterial Fe(2+) trafficking BD65_1323 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BD65_1323 PF01464 Transglycosylase SLT domain BD65_1325 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BD65_1326 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BD65_1327 PF16456 YmgD protein BD65_1330 PF00294 pfkB family carbohydrate kinase BD65_1332 PF01228 Glycine radical BD65_1332 PF02901 Pyruvate formate lyase-like BD65_1333 PF00871 Acetokinase family BD65_1334 PF01490 Transmembrane amino acid transporter protein BD65_1335 PF00291 Pyridoxal-phosphate dependent enzyme BD65_1337 PF00501 AMP-binding enzyme BD65_1337 PF00550 Phosphopantetheine attachment site BD65_1337 PF00668 Condensation domain BD65_1337 PF00975 Thioesterase domain BD65_1337 PF13193 AMP-binding enzyme C-terminal domain BD65_1339 PF00857 Isochorismatase family BD65_1339 PF00550 Phosphopantetheine attachment site BD65_1340 PF00501 AMP-binding enzyme BD65_1340 PF13193 AMP-binding enzyme C-terminal domain BD65_1341 PF00425 chorismate binding enzyme BD65_1342 PF01497 Periplasmic binding protein BD65_1343 PF05977 Transmembrane secretion effector BD65_1344 PF01032 FecCD transport family BD65_1345 PF01032 FecCD transport family BD65_1346 PF00005 ABC transporter BD65_1348 PF00501 AMP-binding enzyme BD65_1348 PF00550 Phosphopantetheine attachment site BD65_1348 PF13193 AMP-binding enzyme C-terminal domain BD65_1348 PF00975 Thioesterase domain BD65_1348 PF00668 Condensation domain BD65_1349 PF03621 MbtH-like protein BD65_1350 PF11806 Domain of unknown function (DUF3327) BD65_1350 PF00756 Putative esterase BD65_1351 PF07715 TonB-dependent Receptor Plug Domain BD65_1351 PF00593 TonB dependent receptor BD65_1352 PF08501 Shikimate dehydrogenase substrate binding domain BD65_1357 PF04972 BON domain BD65_1357 PF00263 Bacterial type II and III secretion system protein BD65_1357 PF13629 Pilus formation protein N terminal region BD65_136 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BD65_1360 PF00437 Type II/IV secretion system protein BD65_1367 PF02472 Biopolymer transport protein ExbD/TolR BD65_1368 PF01618 MotA/TolQ/ExbB proton channel family BD65_1369 PF01053 Cys/Met metabolism PLP-dependent enzyme BD65_137 PF01850 PIN domain BD65_1370 PF09335 SNARE associated Golgi protein BD65_1371 PF06719 AraC-type transcriptional regulator N-terminus BD65_1371 PF12833 Helix-turn-helix domain BD65_1372 PF00465 Iron-containing alcohol dehydrogenase BD65_1374 PF00248 Aldo/keto reductase family BD65_1375 PF11842 Domain of unknown function (DUF3362) BD65_1375 PF08497 Radical SAM N-terminal BD65_1375 PF04055 Radical SAM superfamily BD65_1376 PF07731 Multicopper oxidase BD65_1376 PF07732 Multicopper oxidase BD65_1377 PF01553 Acyltransferase BD65_1378 PF00521 DNA gyrase/topoisomerase IV, subunit A BD65_1378 PF03989 DNA gyrase C-terminal domain, beta-propeller BD65_1379 PF02525 Flavodoxin-like fold BD65_1380 PF03466 LysR substrate binding domain BD65_1380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1381 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_1381 PF00986 DNA gyrase B subunit, carboxyl terminus BD65_1381 PF00204 DNA gyrase B BD65_1381 PF01751 Toprim domain BD65_1382 PF05728 Uncharacterised protein family (UPF0227) BD65_1383 PF00149 Calcineurin-like phosphoesterase BD65_1384 PF06853 Protein of unknown function (DUF1249) BD65_1385 PF00293 NUDIX domain BD65_1386 PF02321 Outer membrane efflux protein BD65_1387 PF06693 Protein of unknown function (DUF1190) BD65_1388 PF03738 Glutathionylspermidine synthase preATP-grasp BD65_1389 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BD65_139 PF01926 50S ribosome-binding GTPase BD65_139 PF06071 Protein of unknown function (DUF933) BD65_1390 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BD65_1391 PF04380 Membrane fusogenic activity BD65_1392 PF01467 Cytidylyltransferase-like BD65_1392 PF00294 pfkB family carbohydrate kinase BD65_1393 PF03710 Glutamate-ammonia ligase adenylyltransferase BD65_1393 PF08335 GlnD PII-uridylyltransferase BD65_1394 PF01928 CYTH domain BD65_1395 PF08239 Bacterial SH3 domain BD65_1396 PF12627 Probable RNA and SrmB- binding site of polymerase A BD65_1396 PF01743 Poly A polymerase head domain BD65_1396 PF01966 HD domain BD65_1397 PF02673 Bacitracin resistance protein BacA BD65_1398 PF02152 Dihydroneopterin aldolase BD65_1399 PF02660 Glycerol-3-phosphate acyltransferase BD65_14 PF01389 OmpA-like transmembrane domain BD65_14 PF00691 OmpA family BD65_1400 PF00814 Glycoprotease family BD65_1401 PF01165 Ribosomal protein S21 BD65_1402 PF01807 CHC2 zinc finger BD65_1402 PF10410 DnaB-helicase binding domain of primase BD65_1402 PF08275 DNA primase catalytic core, N-terminal domain BD65_1402 PF08278 DNA primase DnaG DnaB-binding BD65_1403 PF04546 Sigma-70, non-essential region BD65_1403 PF03979 Sigma-70 factor, region 1.1 BD65_1403 PF00140 Sigma-70 factor, region 1.2 BD65_1403 PF04542 Sigma-70 region 2 BD65_1403 PF04539 Sigma-70 region 3 BD65_1403 PF04545 Sigma-70, region 4 BD65_1407 PF06755 CbtA_toxin of type IV toxin-antitoxin system BD65_1408 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A BD65_141 PF01195 Peptidyl-tRNA hydrolase BD65_1410 PF04002 RadC-like JAB domain BD65_1411 PF03230 Antirestriction protein BD65_1414 PF08220 DeoR-like helix-turn-helix domain BD65_1414 PF13280 WYL domain BD65_1415 PF01926 50S ribosome-binding GTPase BD65_1416 PF02384 N-6 DNA Methylase BD65_1416 PF12161 HsdM N-terminal domain BD65_1417 PF01420 Type I restriction modification DNA specificity domain BD65_1419 PF12008 Type I restriction and modification enzyme - subunit R C terminal BD65_1419 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BD65_1419 PF18766 SWI2/SNF2 ATPase BD65_142 PF10762 Protein of unknown function (DUF2583) BD65_1422 PF07510 Protein of unknown function (DUF1524) BD65_1423 PF08878 Domain of unknown function (DUF1837) BD65_1423 PF14130 Domain of unknown function (DUF4297) BD65_1424 PF00271 Helicase conserved C-terminal domain BD65_1425 PF01695 IstB-like ATP binding protein BD65_1426 PF00665 Integrase core domain BD65_1426 PF02796 Helix-turn-helix domain of resolvase BD65_1427 PF01527 Transposase BD65_1429 PF07638 ECF sigma factor BD65_143 PF14572 Phosphoribosyl synthetase-associated domain BD65_143 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BD65_1434 PF02661 Fic/DOC family BD65_1438 PF01527 Transposase BD65_1439 PF11924 Inverse autotransporter, beta-domain BD65_144 PF08544 GHMP kinases C terminal BD65_144 PF00288 GHMP kinases N terminal domain BD65_1441 PF01527 Transposase BD65_1444 PF00106 short chain dehydrogenase BD65_145 PF03550 Outer membrane lipoprotein LolB BD65_1454 PF05860 haemagglutination activity domain BD65_1454 PF04829 Pre-toxin domain with VENN motif BD65_1454 PF13018 Extended Signal Peptide of Type V secretion system BD65_1454 PF13332 Hemagglutinin repeat BD65_1455 PF13332 Hemagglutinin repeat BD65_1455 PF05860 haemagglutination activity domain BD65_1455 PF13018 Extended Signal Peptide of Type V secretion system BD65_1455 PF04829 Pre-toxin domain with VENN motif BD65_1456 PF08479 POTRA domain, ShlB-type BD65_1456 PF17287 POTRA domain BD65_1456 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BD65_1457 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD65_1457 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BD65_1458 PF05175 Methyltransferase small domain BD65_146 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BD65_146 PF01488 Shikimate / quinate 5-dehydrogenase BD65_146 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BD65_1460 PF01863 Protein of unknown function DUF45 BD65_1461 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BD65_1462 PF03741 Integral membrane protein TerC family BD65_1463 PF00375 Sodium:dicarboxylate symporter family BD65_1464 PF10688 Bacterial inner membrane protein BD65_1465 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BD65_1465 PF08666 SAF domain BD65_1466 PF01232 Mannitol dehydrogenase Rossmann domain BD65_1466 PF08125 Mannitol dehydrogenase C-terminal domain BD65_1467 PF02614 Glucuronate isomerase BD65_1468 PF07690 Major Facilitator Superfamily BD65_1469 PF07729 FCD domain BD65_1469 PF00392 Bacterial regulatory proteins, gntR family BD65_147 PF03462 PCRF domain BD65_147 PF00472 RF-1 domain BD65_1471 PF09335 SNARE associated Golgi protein BD65_1472 PF13721 SecD export protein N-terminal TM region BD65_1474 PF05957 Bacterial protein of unknown function (DUF883) BD65_1475 PF07332 Putative Actinobacterial Holin-X, holin superfamily III BD65_1477 PF07681 DoxX BD65_1478 PF03466 LysR substrate binding domain BD65_1478 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1479 PF02678 Pirin BD65_1479 PF17954 Quercetinase C-terminal cupin domain BD65_148 PF17827 PrmC N-terminal domain BD65_148 PF13847 Methyltransferase domain BD65_1480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BD65_1481 PF04348 LppC putative lipoprotein BD65_1482 PF02021 Uncharacterised protein family UPF0102 BD65_1483 PF13580 SIS domain BD65_1484 PF04972 BON domain BD65_1485 PF00912 Transglycosylase BD65_1487 PF18415 Histidine kinase receptor ArcB trans-membrane domain BD65_1487 PF00072 Response regulator receiver domain BD65_1487 PF01627 Hpt domain BD65_1487 PF00989 PAS fold BD65_1487 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_1487 PF00512 His Kinase A (phospho-acceptor) domain BD65_1488 PF16199 Radical_SAM C-terminal domain BD65_1488 PF04055 Radical SAM superfamily BD65_1489 PF04898 Glutamate synthase central domain BD65_1489 PF01645 Conserved region in glutamate synthase BD65_1489 PF01493 GXGXG motif BD65_1489 PF00310 Glutamine amidotransferases class-II BD65_149 PF04247 Invasion gene expression up-regulator, SirB BD65_1490 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD65_1490 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BD65_1491 PF05860 haemagglutination activity domain BD65_1494 PF04386 Stringent starvation protein B BD65_1495 PF00043 Glutathione S-transferase, C-terminal domain BD65_1495 PF02798 Glutathione S-transferase, N-terminal domain BD65_1496 PF00380 Ribosomal protein S9/S16 BD65_1497 PF00572 Ribosomal protein L13 BD65_1498 PF03969 AFG1-like ATPase BD65_1499 PF06295 Protein of unknown function (DUF1043) BD65_15 PF03846 Cell division inhibitor SulA BD65_150 PF13369 Transglutaminase-like superfamily BD65_1500 PF00595 PDZ domain BD65_1500 PF13180 PDZ domain BD65_1501 PF13180 PDZ domain BD65_1502 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BD65_1503 PF01722 BolA-like protein BD65_1504 PF13466 STAS domain BD65_1505 PF05494 MlaC protein BD65_1506 PF02470 MlaD protein BD65_1507 PF02405 Permease MlaE BD65_1508 PF00005 ABC transporter BD65_1509 PF01699 Sodium/calcium exchanger protein BD65_151 PF00793 DAHP synthetase I family BD65_1510 PF00571 CBS domain BD65_1510 PF01380 SIS domain BD65_1512 PF06835 Lipopolysaccharide-assembly, LptC-related BD65_1513 PF03968 OstA-like protein BD65_1514 PF00005 ABC transporter BD65_1514 PF12399 Branched-chain amino acid ATP-binding cassette transporter BD65_1515 PF04963 Sigma-54 factor, core binding domain BD65_1515 PF00309 Sigma-54 factor, Activator interacting domain (AID) BD65_1515 PF04552 Sigma-54, DNA binding domain BD65_1516 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BD65_1517 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BD65_1518 PF03668 P-loop ATPase protein family BD65_1519 PF00381 PTS HPr component phosphorylation site BD65_152 PF01740 STAS domain BD65_152 PF00916 Sulfate permease family BD65_1521 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BD65_1521 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BD65_1522 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BD65_1522 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BD65_1523 PF01042 Endoribonuclease L-PSP BD65_1524 PF00128 Alpha amylase, catalytic domain BD65_1524 PF11941 Domain of unknown function (DUF3459) BD65_1525 PF00367 phosphotransferase system, EIIB BD65_1525 PF02378 Phosphotransferase system, EIIC BD65_1526 PF00356 Bacterial regulatory proteins, lacI family BD65_1527 PF00689 Cation transporting ATPase, C-terminus BD65_1527 PF00690 Cation transporter/ATPase, N-terminus BD65_1530 PF14760 Rnk N-terminus BD65_1530 PF01272 Transcription elongation factor, GreA/GreB, C-term BD65_1531 PF07361 Cytochrome b562 BD65_1532 PF01523 Putative modulator of DNA gyrase BD65_1533 PF04751 Protein of unknown function (DUF615) BD65_1534 PF01337 Barstar (barnase inhibitor) BD65_1535 PF00545 ribonuclease BD65_1536 PF00171 Aldehyde dehydrogenase family BD65_1537 PF04632 Fusaric acid resistance protein family BD65_1538 PF13533 Biotin-lipoyl like BD65_1539 PF07869 Protein of unknown function (DUF1656) BD65_154 PF07694 5TMR of 5TMR-LYT BD65_154 PF00990 Diguanylate cyclase, GGDEF domain BD65_1540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1540 PF03466 LysR substrate binding domain BD65_1541 PF01523 Putative modulator of DNA gyrase BD65_1542 PF00795 Carbon-nitrogen hydrolase BD65_1543 PF13502 AsmA-like C-terminal region BD65_1543 PF13116 Protein of unknown function BD65_1544 PF10150 Ribonuclease E/G family BD65_1544 PF00575 S1 RNA binding domain BD65_1545 PF02545 Maf-like protein BD65_1546 PF04093 rod shape-determining protein MreD BD65_1547 PF04085 rod shape-determining protein MreC BD65_1549 PF17157 Gammaproteobacterial periplasmic sensor domain BD65_1549 PF00990 Diguanylate cyclase, GGDEF domain BD65_1549 PF00563 EAL domain BD65_1550 PF08240 Alcohol dehydrogenase GroES-like domain BD65_1550 PF00107 Zinc-binding dehydrogenase BD65_1551 PF00174 Oxidoreductase molybdopterin binding domain BD65_1552 PF01794 Ferric reductase like transmembrane component BD65_1553 PF01220 Dehydroquinase class II BD65_1554 PF00364 Biotin-requiring enzyme BD65_1555 PF02785 Biotin carboxylase C-terminal domain BD65_1555 PF00289 Biotin carboxylase, N-terminal domain BD65_1555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BD65_1556 PF06196 Protein of unknown function (DUF997) BD65_1557 PF00474 Sodium:solute symporter family BD65_1559 PF01207 Dihydrouridine synthase (Dus) BD65_156 PF03009 Glycerophosphoryl diester phosphodiesterase family BD65_1560 PF02954 Bacterial regulatory protein, Fis family BD65_1562 PF03279 Bacterial lipid A biosynthesis acyltransferase BD65_1563 PF00484 Carbonic anhydrase BD65_1564 PF04172 LrgB-like family BD65_1565 PF03788 LrgA family BD65_1566 PF03466 LysR substrate binding domain BD65_1566 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1567 PF00999 Sodium/hydrogen exchanger family BD65_1568 PF00860 Permease family BD65_1571 PF00436 Single-strand binding protein family BD65_1572 PF17755 UvrA DNA-binding domain BD65_1572 PF00005 ABC transporter BD65_1572 PF17760 UvrA interaction domain BD65_1573 PF04237 YjbR BD65_1574 PF00155 Aminotransferase class I and II BD65_1576 PF01168 Alanine racemase, N-terminal domain BD65_1576 PF00842 Alanine racemase, C-terminal domain BD65_1577 PF03796 DnaB-like helicase C terminal domain BD65_1577 PF00772 DnaB-like helicase N terminal domain BD65_1578 PF08240 Alcohol dehydrogenase GroES-like domain BD65_1578 PF00107 Zinc-binding dehydrogenase BD65_1579 PF09583 Phage shock protein G (Phageshock_PspG) BD65_158 PF00854 POT family BD65_1580 PF01207 Dihydrouridine synthase (Dus) BD65_1581 PF01475 Ferric uptake regulator family BD65_1582 PF01726 LexA DNA binding domain BD65_1582 PF00717 Peptidase S24-like BD65_1583 PF01219 Prokaryotic diacylglycerol kinase BD65_1584 PF01553 Acyltransferase BD65_1585 PF01040 UbiA prenyltransferase family BD65_1586 PF04345 Chorismate lyase BD65_1587 PF07148 Maltose operon periplasmic protein precursor (MalM) BD65_1588 PF02264 LamB porin BD65_1589 PF00005 ABC transporter BD65_1589 PF17912 MalK OB fold domain BD65_159 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BD65_1591 PF01547 Bacterial extracellular solute-binding protein BD65_1592 PF14785 Maltose transport system permease protein MalF P2 domain BD65_1592 PF00528 Binding-protein-dependent transport system inner membrane component BD65_1593 PF00528 Binding-protein-dependent transport system inner membrane component BD65_1594 PF06146 Phosphate-starvation-inducible E BD65_1595 PF00342 Phosphoglucose isomerase BD65_1597 PF01842 ACT domain BD65_1597 PF00696 Amino acid kinase family BD65_1598 PF17287 POTRA domain BD65_1598 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BD65_1598 PF08479 POTRA domain, ShlB-type BD65_1599 PF05860 haemagglutination activity domain BD65_1599 PF13332 Hemagglutinin repeat BD65_16 PF04994 TfoX C-terminal domain BD65_16 PF04993 TfoX N-terminal domain BD65_160 PF02811 PHP domain BD65_1600 PF04488 Glycosyltransferase sugar-binding region containing DXD motif BD65_1602 PF17862 AAA+ lid domain BD65_1602 PF00004 ATPase family associated with various cellular activities (AAA) BD65_1602 PF01434 Peptidase family M41 BD65_1609 PF04717 Type VI secretion system, phage-baseplate injector BD65_1609 PF16671 Actin cross-linking domain BD65_161 PF02613 Nitrate reductase delta subunit BD65_162 PF07273 Protein of unknown function (DUF1439) BD65_1620 PF00809 Pterin binding enzyme BD65_1620 PF02310 B12 binding domain BD65_1620 PF02607 B12 binding domain BD65_1620 PF02965 Vitamin B12 dependent methionine synthase, activation domain BD65_1620 PF02574 Homocysteine S-methyltransferase BD65_1621 PF09339 IclR helix-turn-helix domain BD65_1621 PF01614 Bacterial transcriptional regulator BD65_1622 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BD65_1623 PF00463 Isocitrate lyase family BD65_1624 PF01274 Malate synthase BD65_1625 PF04204 Homoserine O-succinyltransferase BD65_163 PF07690 Major Facilitator Superfamily BD65_1633 PF02142 MGS-like domain BD65_1633 PF01808 AICARFT/IMPCHase bienzyme BD65_1634 PF02844 Phosphoribosylglycinamide synthetase, N domain BD65_1634 PF02843 Phosphoribosylglycinamide synthetase, C domain BD65_1634 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BD65_1635 PF07356 Protein of unknown function (DUF1481) BD65_1636 PF00216 Bacterial DNA-binding protein BD65_1637 PF04222 Protein of unknown function (DUF416) BD65_1638 PF04493 Endonuclease V BD65_1639 PF01208 Uroporphyrinogen decarboxylase (URO-D) BD65_164 PF13302 Acetyltransferase (GNAT) domain BD65_1640 PF09297 NADH pyrophosphatase zinc ribbon domain BD65_1640 PF00293 NUDIX domain BD65_1641 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ BD65_1642 PF01964 Radical SAM ThiC family BD65_1642 PF13667 ThiC-associated domain BD65_1643 PF02581 Thiamine monophosphate synthase BD65_1644 PF00899 ThiF family BD65_1645 PF02597 ThiS family BD65_1646 PF05690 Thiazole biosynthesis protein ThiG BD65_1647 PF04055 Radical SAM superfamily BD65_1647 PF06968 Biotin and Thiamin Synthesis associated domain BD65_1648 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BD65_1649 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BD65_165 PF04337 Protein of unknown function, DUF480 BD65_1650 PF04998 RNA polymerase Rpb1, domain 5 BD65_1650 PF04997 RNA polymerase Rpb1, domain 1 BD65_1650 PF00623 RNA polymerase Rpb1, domain 2 BD65_1650 PF05000 RNA polymerase Rpb1, domain 4 BD65_1650 PF04983 RNA polymerase Rpb1, domain 3 BD65_1651 PF00562 RNA polymerase Rpb2, domain 6 BD65_1651 PF04565 RNA polymerase Rpb2, domain 3 BD65_1651 PF04561 RNA polymerase Rpb2, domain 2 BD65_1651 PF04563 RNA polymerase beta subunit BD65_1651 PF10385 RNA polymerase beta subunit external 1 domain BD65_1651 PF04560 RNA polymerase Rpb2, domain 7 BD65_1652 PF16320 Ribosomal protein L7/L12 dimerisation domain BD65_1652 PF00542 Ribosomal protein L7/L12 C-terminal domain BD65_1653 PF00466 Ribosomal protein L10 BD65_1654 PF00687 Ribosomal protein L1p/L10e family BD65_1655 PF00298 Ribosomal protein L11, RNA binding domain BD65_1655 PF03946 Ribosomal protein L11, N-terminal domain BD65_1656 PF02357 Transcription termination factor nusG BD65_1656 PF00467 KOW motif BD65_1657 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BD65_1658 PF03143 Elongation factor Tu C-terminal domain BD65_1658 PF03144 Elongation factor Tu domain 2 BD65_1658 PF00009 Elongation factor Tu GTP binding domain BD65_166 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BD65_1664 PF00485 Phosphoribulokinase / Uridine kinase family BD65_1665 PF02237 Biotin protein ligase C terminal domain BD65_1665 PF08279 HTH domain BD65_1665 PF03099 Biotin/lipoate A/B protein ligase family BD65_1666 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BD65_1666 PF01565 FAD binding domain BD65_167 PF03023 Lipid II flippase MurJ BD65_1672 PF12724 Flavodoxin domain BD65_1673 PF02386 Cation transport protein BD65_1674 PF01205 Uncharacterized protein family UPF0029 BD65_1674 PF09186 Domain of unknown function (DUF1949) BD65_1675 PF00557 Metallopeptidase family M24 BD65_1676 PF00378 Enoyl-CoA hydratase/isomerase BD65_1676 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BD65_1676 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BD65_1677 PF02803 Thiolase, C-terminal domain BD65_1677 PF00108 Thiolase, N-terminal domain BD65_1678 PF00970 Oxidoreductase FAD-binding domain BD65_1678 PF00175 Oxidoreductase NAD-binding domain BD65_1679 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BD65_168 PF08479 POTRA domain, ShlB-type BD65_168 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BD65_168 PF17287 POTRA domain BD65_1681 PF02357 Transcription termination factor nusG BD65_1682 PF00490 Delta-aminolevulinic acid dehydratase BD65_1683 PF01026 TatD related DNase BD65_1684 PF00902 Sec-independent protein translocase protein (TatC) BD65_1686 PF02416 mttA/Hcf106 family BD65_1687 PF03109 ABC1 family BD65_1688 PF02036 SCP-2 sterol transfer family BD65_1689 PF01209 ubiE/COQ5 methyltransferase family BD65_169 PF05860 haemagglutination activity domain BD65_169 PF13332 Hemagglutinin repeat BD65_1690 PF02646 RmuC family BD65_1691 PF09335 SNARE associated Golgi protein BD65_1692 PF13722 5TM C-terminal transporter carbon starvation CstA BD65_1692 PF02554 Carbon starvation protein CstA BD65_1694 PF01048 Phosphorylase superfamily BD65_1695 PF01738 Dienelactone hydrolase family BD65_1696 PF08267 Cobalamin-independent synthase, N-terminal domain BD65_1696 PF01717 Cobalamin-independent synthase, Catalytic domain BD65_1697 PF00892 EamA-like transporter family BD65_1698 PF03466 LysR substrate binding domain BD65_1698 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1699 PF03009 Glycerophosphoryl diester phosphodiesterase family BD65_17 PF12805 FUSC-like inner membrane protein yccS BD65_1700 PF17912 MalK OB fold domain BD65_1700 PF00005 ABC transporter BD65_1701 PF00528 Binding-protein-dependent transport system inner membrane component BD65_1702 PF00528 Binding-protein-dependent transport system inner membrane component BD65_1703 PF13416 Bacterial extracellular solute-binding protein BD65_171 PF00750 tRNA synthetases class I (R) BD65_171 PF05746 DALR anticodon binding domain BD65_171 PF03485 Arginyl tRNA synthetase N terminal domain BD65_1710 PF00005 ABC transporter BD65_1711 PF12399 Branched-chain amino acid ATP-binding cassette transporter BD65_1711 PF00005 ABC transporter BD65_1712 PF11862 Domain of unknown function (DUF3382) BD65_1712 PF02653 Branched-chain amino acid transport system / permease component BD65_1713 PF02653 Branched-chain amino acid transport system / permease component BD65_1714 PF13458 Periplasmic binding protein BD65_1715 PF02595 Glycerate kinase family BD65_1716 PF12568 Acetyltransferase (GNAT) domain, PanZ BD65_1717 PF02447 GntP family permease BD65_1718 PF13556 PucR C-terminal helix-turn-helix domain BD65_1718 PF17853 GGDEF-like domain BD65_1718 PF05651 Putative sugar diacid recognition BD65_1719 PF00140 Sigma-70 factor, region 1.2 BD65_1719 PF04542 Sigma-70 region 2 BD65_1719 PF04545 Sigma-70, region 4 BD65_172 PF06185 YecM protein BD65_1720 PF18075 FtsX extracellular domain BD65_1720 PF02687 FtsX-like permease family BD65_1721 PF00005 ABC transporter BD65_1722 PF00448 SRP54-type protein, GTPase domain BD65_1722 PF02881 SRP54-type protein, helical bundle domain BD65_1722 PF02881 SRP54-type protein, helical bundle domain BD65_1722 PF00448 SRP54-type protein, GTPase domain BD65_1724 PF06611 Protein of unknown function (DUF1145) BD65_1727 PF07947 YhhN family BD65_1728 PF00403 Heavy-metal-associated domain BD65_1729 PF01206 Sulfurtransferase TusA BD65_173 PF03932 CutC family BD65_1730 PF02592 Putative vitamin uptake transporter BD65_1731 PF08786 DcrB BD65_1732 PF02754 Cysteine-rich domain BD65_1732 PF13183 4Fe-4S dicluster domain BD65_1733 PF00890 FAD binding domain BD65_1734 PF04324 BFD-like [2Fe-2S] binding domain BD65_1734 PF01266 FAD dependent oxidoreductase BD65_1735 PF07690 Major Facilitator Superfamily BD65_1736 PF03009 Glycerophosphoryl diester phosphodiesterase family BD65_1738 PF12146 Serine aminopeptidase, S33 BD65_1739 PF01810 LysE type translocator BD65_174 PF08003 Protein of unknown function (DUF1698) BD65_1740 PF00270 DEAD/DEAH box helicase BD65_1740 PF16124 RecQ zinc-binding BD65_1740 PF00570 HRDC domain BD65_1740 PF00271 Helicase conserved C-terminal domain BD65_1740 PF09382 RQC domain BD65_1741 PF02253 Phospholipase A1 BD65_1742 PF03061 Thioesterase superfamily BD65_1743 PF00892 EamA-like transporter family BD65_1744 PF01544 CorA-like Mg2+ transporter protein BD65_1746 PF09370 Phosphoenolpyruvate hydrolase-like BD65_1749 PF13361 UvrD-like helicase C-terminal domain BD65_1749 PF00580 UvrD/REP helicase N-terminal domain BD65_175 PF13649 Methyltransferase domain BD65_1750 PF13419 Haloacid dehalogenase-like hydrolase BD65_1751 PF00589 Phage integrase family BD65_1751 PF02899 Phage integrase, N-terminal SAM-like domain BD65_1752 PF04340 Protein of unknown function, DUF484 BD65_1753 PF01678 Diaminopimelate epimerase BD65_1754 PF13627 Prokaryotic lipoprotein-attachment site BD65_1755 PF01491 Frataxin-like domain BD65_1756 PF01295 Adenylate cyclase, class-I BD65_1756 PF12633 Adenylate cyclase NT domain BD65_1757 PF03900 Porphobilinogen deaminase, C-terminal domain BD65_1757 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BD65_1758 PF02602 Uroporphyrinogen-III synthase HemD BD65_1759 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase BD65_176 PF01124 MAPEG family BD65_1760 PF07719 Tetratricopeptide repeat BD65_1760 PF07219 HemY protein N-terminus BD65_1766 PF00324 Amino acid permease BD65_1767 PF03808 Glycosyl transferase WecB/TagA/CpsF family BD65_1768 PF06899 WzyE protein, O-antigen assembly polymerase BD65_1769 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 BD65_177 PF01904 Protein of unknown function DUF72 BD65_1770 PF01943 Polysaccharide biosynthesis protein BD65_1771 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BD65_1773 PF00483 Nucleotidyl transferase BD65_1774 PF16363 GDP-mannose 4,6 dehydratase BD65_1775 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BD65_1775 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BD65_1775 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BD65_1776 PF02350 UDP-N-acetylglucosamine 2-epimerase BD65_1777 PF02706 Chain length determinant protein BD65_1778 PF00953 Glycosyl transferase family 4 BD65_1779 PF07498 Rho termination factor, N-terminal domain BD65_1779 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BD65_1779 PF07497 Rho termination factor, RNA-binding domain BD65_178 PF02938 GAD domain BD65_178 PF00152 tRNA synthetases class II (D, K and N) BD65_178 PF01336 OB-fold nucleic acid binding domain BD65_1780 PF00085 Thioredoxin BD65_1781 PF00271 Helicase conserved C-terminal domain BD65_1781 PF00270 DEAD/DEAH box helicase BD65_1782 PF02541 Ppx/GppA phosphatase family BD65_1783 PF13361 UvrD-like helicase C-terminal domain BD65_1783 PF00580 UvrD/REP helicase N-terminal domain BD65_1785 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BD65_1785 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BD65_1786 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1786 PF03466 LysR substrate binding domain BD65_1787 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BD65_1787 PF18416 N-acetylglucosamine binding protein domain 2 BD65_1788 PF00585 C-terminal regulatory domain of Threonine dehydratase BD65_1788 PF00291 Pyridoxal-phosphate dependent enzyme BD65_1789 PF00920 Dehydratase family BD65_179 PF00293 NUDIX domain BD65_1790 PF01063 Amino-transferase class IV BD65_1792 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BD65_1792 PF00205 Thiamine pyrophosphate enzyme, central domain BD65_1792 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BD65_1793 PF01078 Magnesium chelatase, subunit ChlI BD65_1793 PF13335 Magnesium chelatase, subunit ChlI C-terminal BD65_1794 PF04219 Protein of unknown function, DUF BD65_1795 PF03466 LysR substrate binding domain BD65_1795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1796 PF01548 Transposase BD65_1796 PF02371 Transposase IS116/IS110/IS902 family BD65_1797 PF13276 HTH-like domain BD65_1797 PF00665 Integrase core domain BD65_1797 PF13333 Integrase core domain BD65_1798 PF01527 Transposase BD65_18 PF03733 Inner membrane component domain BD65_180 PF01709 Transcriptional regulator BD65_1805 PF01177 Asp/Glu/Hydantoin racemase BD65_1806 PF00593 TonB dependent receptor BD65_1806 PF07715 TonB-dependent Receptor Plug Domain BD65_1807 PF05958 tRNA (Uracil-5-)-methyltransferase BD65_1808 PF07226 Protein of unknown function (DUF1422) BD65_1809 PF00440 Bacterial regulatory proteins, tetR family BD65_181 PF02075 Crossover junction endodeoxyribonuclease RuvC BD65_1810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1810 PF03466 LysR substrate binding domain BD65_1811 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD65_1811 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BD65_1812 PF00462 Glutaredoxin BD65_1812 PF08534 Redoxin BD65_1813 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BD65_1813 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD65_1814 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BD65_1814 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD65_1818 PF00529 HlyD membrane-fusion protein of T1SS BD65_1819 PF00664 ABC transporter transmembrane region BD65_1819 PF00005 ABC transporter BD65_182 PF01330 RuvA N terminal domain BD65_182 PF07499 RuvA, C-terminal domain BD65_1821 PF00593 TonB dependent receptor BD65_1821 PF07715 TonB-dependent Receptor Plug Domain BD65_1822 PF00206 Lyase BD65_1822 PF14698 Argininosuccinate lyase C-terminal BD65_1823 PF00764 Arginosuccinate synthase BD65_1824 PF00696 Amino acid kinase family BD65_1825 PF01118 Semialdehyde dehydrogenase, NAD binding domain BD65_1825 PF02774 Semialdehyde dehydrogenase, dimerisation domain BD65_1826 PF01546 Peptidase family M20/M25/M40 BD65_1826 PF07687 Peptidase dimerisation domain BD65_1827 PF00311 Phosphoenolpyruvate carboxylase BD65_1829 PF02219 Methylenetetrahydrofolate reductase BD65_183 PF17864 RuvB AAA lid domain BD65_183 PF05491 RuvB C-terminal winged helix domain BD65_183 PF05496 Holliday junction DNA helicase RuvB P-loop domain BD65_1834 PF00742 Homoserine dehydrogenase BD65_1834 PF00696 Amino acid kinase family BD65_1834 PF03447 Homoserine dehydrogenase, NAD binding domain BD65_1835 PF01053 Cys/Met metabolism PLP-dependent enzyme BD65_1836 PF01340 Met Apo-repressor, MetJ BD65_1837 PF01197 Ribosomal protein L31 BD65_1838 PF00270 DEAD/DEAH box helicase BD65_1838 PF00271 Helicase conserved C-terminal domain BD65_1838 PF17764 3′ DNA-binding domain (3′BD) BD65_1838 PF18074 Primosomal protein N C-terminal domain BD65_1838 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BD65_1839 PF00356 Bacterial regulatory proteins, lacI family BD65_184 PF00854 POT family BD65_1840 PF05036 Sporulation related domain BD65_1841 PF00227 Proteasome subunit BD65_1842 PF10431 C-terminal, D2-small domain, of ClpB protein BD65_1842 PF00004 ATPase family associated with various cellular activities (AAA) BD65_1842 PF07724 AAA domain (Cdc48 subfamily) BD65_1843 PF01040 UbiA prenyltransferase family BD65_1844 PF03737 Aldolase/RraA BD65_1845 PF06005 Cell division protein ZapB BD65_1846 PF00230 Major intrinsic protein BD65_1847 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BD65_1847 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BD65_1848 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BD65_1849 PF07690 Major Facilitator Superfamily BD65_185 PF00950 ABC 3 transport family BD65_1850 PF00175 Oxidoreductase NAD-binding domain BD65_1850 PF00970 Oxidoreductase FAD-binding domain BD65_1851 PF05656 Protein of unknown function (DUF805) BD65_1852 PF07305 Protein of unknown function (DUF1454) BD65_1853 PF00121 Triosephosphate isomerase BD65_1855 PF00365 Phosphofructokinase BD65_1856 PF01545 Cation efflux family BD65_1856 PF16916 Dimerisation domain of Zinc Transporter BD65_1857 PF04606 Ogr/Delta-like zinc finger BD65_186 PF00005 ABC transporter BD65_1864 PF02413 Caudovirales tail fibre assembly protein, lambda gpK BD65_1865 PF07484 Phage Tail Collar Domain BD65_187 PF01297 Zinc-uptake complex component A periplasmic BD65_188 PF01476 LysM domain BD65_188 PF08525 Opacity-associated protein A N-terminal motif BD65_188 PF01551 Peptidase family M23 BD65_1886 PF05840 Bacteriophage replication gene A protein (GPA) BD65_189 PF03279 Bacterial lipid A biosynthesis acyltransferase BD65_1898 PF00589 Phage integrase family BD65_1898 PF02899 Phage integrase, N-terminal SAM-like domain BD65_1899 PF07813 LTXXQ motif family protein BD65_19 PF13361 UvrD-like helicase C-terminal domain BD65_19 PF00580 UvrD/REP helicase N-terminal domain BD65_19 PF12462 DNA helicase IV / RNA helicase N terminal BD65_190 PF02887 Pyruvate kinase, alpha/beta domain BD65_190 PF00224 Pyruvate kinase, barrel domain BD65_1900 PF00486 Transcriptional regulatory protein, C terminal BD65_1900 PF00072 Response regulator receiver domain BD65_1901 PF00672 HAMP domain BD65_1901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_1901 PF00512 His Kinase A (phospho-acceptor) domain BD65_1901 PF16527 Two-component sensor protein CpxA, periplasmic domain BD65_1902 PF00588 SpoU rRNA Methylase family BD65_1903 PF06426 Serine acetyltransferase, N-terminal BD65_1903 PF00132 Bacterial transferase hexapeptide (six repeats) BD65_1904 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BD65_1904 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BD65_1905 PF02556 Preprotein translocase subunit SecB BD65_1906 PF00462 Glutaredoxin BD65_1907 PF00581 Rhodanese-like domain BD65_1908 PF01676 Metalloenzyme superfamily BD65_1908 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BD65_1909 PF01551 Peptidase family M23 BD65_191 PF01418 Helix-turn-helix domain, rpiR family BD65_191 PF01380 SIS domain BD65_1910 PF04748 Divergent polysaccharide deacetylase BD65_1911 PF08240 Alcohol dehydrogenase GroES-like domain BD65_1911 PF00107 Zinc-binding dehydrogenase BD65_1912 PF00155 Aminotransferase class I and II BD65_1913 PF01370 NAD dependent epimerase/dehydratase family BD65_1914 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BD65_1915 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BD65_1916 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BD65_1917 PF00535 Glycosyl transferase family 2 BD65_1918 PF01467 Cytidylyltransferase-like BD65_1919 PF06827 Zinc finger found in FPG and IleRS BD65_1919 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BD65_1919 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BD65_192 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BD65_192 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BD65_1920 PF00471 Ribosomal protein L33 BD65_1921 PF00830 Ribosomal L28 family BD65_1922 PF04002 RadC-like JAB domain BD65_1923 PF04127 DNA / pantothenate metabolism flavoprotein BD65_1923 PF02441 Flavoprotein BD65_1924 PF00692 dUTPase BD65_1925 PF00440 Bacterial regulatory proteins, tetR family BD65_1926 PF00156 Phosphoribosyl transferase domain BD65_1927 PF01138 3' exoribonuclease family, domain 1 BD65_1927 PF03725 3' exoribonuclease family, domain 2 BD65_1928 PF08340 Domain of unknown function (DUF1732) BD65_1928 PF03755 YicC-like family, N-terminal region BD65_193 PF01081 KDPG and KHG aldolase BD65_1930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_1930 PF03466 LysR substrate binding domain BD65_1931 PF00990 Diguanylate cyclase, GGDEF domain BD65_1931 PF00563 EAL domain BD65_1931 PF13426 PAS domain BD65_1932 PF00378 Enoyl-CoA hydratase/isomerase BD65_1933 PF07662 Na+ dependent nucleoside transporter C-terminus BD65_1933 PF07670 Nucleoside recognition BD65_1933 PF01773 Na+ dependent nucleoside transporter N-terminus BD65_1934 PF07662 Na+ dependent nucleoside transporter C-terminus BD65_1934 PF01773 Na+ dependent nucleoside transporter N-terminus BD65_1934 PF07670 Nucleoside recognition BD65_1935 PF03458 UPF0126 domain BD65_1936 PF01653 NAD-dependent DNA ligase adenylation domain BD65_1936 PF03120 NAD-dependent DNA ligase OB-fold domain BD65_1937 PF00625 Guanylate kinase BD65_1938 PF01192 RNA polymerase Rpb6 BD65_1939 PF04607 Region found in RelA / SpoT proteins BD65_1939 PF13291 ACT domain BD65_1939 PF02824 TGS domain BD65_194 PF00893 Small Multidrug Resistance protein BD65_1940 PF00588 SpoU rRNA Methylase family BD65_1940 PF12105 SpoU, rRNA methylase, C-terminal BD65_1941 PF17191 RecG wedge domain BD65_1941 PF00270 DEAD/DEAH box helicase BD65_1941 PF00271 Helicase conserved C-terminal domain BD65_1942 PF03616 Sodium/glutamate symporter BD65_1943 PF00860 Permease family BD65_1944 PF05170 AsmA family BD65_1945 PF00583 Acetyltransferase (GNAT) family BD65_1945 PF09500 Putative thioesterase (yiiD_Cterm) BD65_1946 PF02580 D-Tyr-tRNA(Tyr) deacylase BD65_1947 PF03631 Virulence factor BrkB BD65_1948 PF13419 Haloacid dehalogenase-like hydrolase BD65_195 PF00893 Small Multidrug Resistance protein BD65_1950 PF00120 Glutamine synthetase, catalytic domain BD65_1950 PF03951 Glutamine synthetase, beta-Grasp domain BD65_1951 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_1951 PF00512 His Kinase A (phospho-acceptor) domain BD65_1951 PF00989 PAS fold BD65_1952 PF00158 Sigma-54 interaction domain BD65_1952 PF02954 Bacterial regulatory protein, Fis family BD65_1952 PF00072 Response regulator receiver domain BD65_1953 PF06969 HemN C-terminal domain BD65_1953 PF04055 Radical SAM superfamily BD65_1954 PF04220 Der GTPase activator (YihI) BD65_1955 PF01926 50S ribosome-binding GTPase BD65_1956 PF01367 5'-3' exonuclease, C-terminal SAM fold BD65_1956 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BD65_1956 PF00476 DNA polymerase family A BD65_1956 PF01612 3'-5' exonuclease BD65_1957 PF01323 DSBA-like thioredoxin domain BD65_1958 PF01636 Phosphotransferase enzyme family BD65_1959 PF06288 Protein of unknown function (DUF1040) BD65_196 PF01042 Endoribonuclease L-PSP BD65_1960 PF12804 MobA-like NTP transferase domain BD65_1961 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BD65_1966 PF07729 FCD domain BD65_1966 PF00392 Bacterial regulatory proteins, gntR family BD65_1967 PF00356 Bacterial regulatory proteins, lacI family BD65_1968 PF00294 pfkB family carbohydrate kinase BD65_1969 PF13407 Periplasmic binding protein domain BD65_197 PF13307 Helicase C-terminal domain BD65_197 PF04851 Type III restriction enzyme, res subunit BD65_1970 PF02653 Branched-chain amino acid transport system / permease component BD65_1971 PF00005 ABC transporter BD65_1972 PF05025 RbsD / FucU transport protein family BD65_1973 PF02705 K+ potassium transporter BD65_1974 PF17868 AAA lid domain BD65_1974 PF12592 Protein of unknown function (DUF3763) BD65_1974 PF07728 AAA domain (dynein-related subfamily) BD65_1975 PF05762 VWA domain containing CoxE-like protein BD65_1977 PF03590 Aspartate-ammonia ligase BD65_1978 PF01037 Lrp/AsnC ligand binding domain BD65_1979 PF00258 Flavodoxin BD65_198 PF00814 Glycoprotease family BD65_1980 PF13932 GidA associated domain BD65_1980 PF01134 Glucose inhibited division protein A BD65_1981 PF02527 rRNA small subunit methyltransferase G BD65_1982 PF03899 ATP synthase I chain BD65_1983 PF00119 ATP synthase A chain BD65_1984 PF00137 ATP synthase subunit C BD65_1985 PF00430 ATP synthase B/B' CF(0) BD65_1986 PF00213 ATP synthase delta (OSCP) subunit BD65_1987 PF02874 ATP synthase alpha/beta family, beta-barrel domain BD65_1987 PF00306 ATP synthase alpha/beta chain, C terminal domain BD65_1987 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BD65_1988 PF00231 ATP synthase BD65_1989 PF02874 ATP synthase alpha/beta family, beta-barrel domain BD65_1989 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BD65_199 PF03843 Outer membrane lipoprotein Slp family BD65_1990 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BD65_1990 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BD65_1991 PF12804 MobA-like NTP transferase domain BD65_1991 PF00132 Bacterial transferase hexapeptide (six repeats) BD65_1992 PF01380 SIS domain BD65_1993 PF01797 Transposase IS200 like BD65_1996 PF12849 PBP superfamily domain BD65_1997 PF00528 Binding-protein-dependent transport system inner membrane component BD65_1998 PF00528 Binding-protein-dependent transport system inner membrane component BD65_1999 PF00005 ABC transporter BD65_2 PF01180 Dihydroorotate dehydrogenase BD65_20 PF02142 MGS-like domain BD65_200 PF00501 AMP-binding enzyme BD65_200 PF13193 AMP-binding enzyme C-terminal domain BD65_2000 PF01895 PhoU domain BD65_2001 PF00497 Bacterial extracellular solute-binding proteins, family 3 BD65_2002 PF00528 Binding-protein-dependent transport system inner membrane component BD65_2003 PF00528 Binding-protein-dependent transport system inner membrane component BD65_2004 PF00860 Permease family BD65_2005 PF02203 Tar ligand binding domain homologue BD65_2005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD65_2005 PF00672 HAMP domain BD65_2007 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BD65_2007 PF02753 Pili assembly chaperone PapD, C-terminal domain BD65_2008 PF13953 PapC C-terminal domain BD65_2008 PF13954 PapC N-terminal domain BD65_2008 PF00577 Outer membrane usher protein BD65_201 PF00570 HRDC domain BD65_201 PF01612 3'-5' exonuclease BD65_2012 PF12631 MnmE helical domain BD65_2012 PF01926 50S ribosome-binding GTPase BD65_2012 PF10396 GTP-binding protein TrmE N-terminus BD65_2013 PF02096 60Kd inner membrane protein BD65_2013 PF14849 YidC periplasmic domain BD65_2014 PF01809 Putative membrane protein insertion efficiency factor BD65_2015 PF00825 Ribonuclease P BD65_2016 PF00468 Ribosomal protein L34 BD65_2017 PF11638 DnaA N-terminal domain BD65_2017 PF08299 Bacterial dnaA protein helix-turn-helix BD65_2017 PF00308 Bacterial dnaA protein BD65_2018 PF02767 DNA polymerase III beta subunit, central domain BD65_2018 PF00712 DNA polymerase III beta subunit, N-terminal domain BD65_2018 PF02768 DNA polymerase III beta subunit, C-terminal domain BD65_2019 PF02463 RecF/RecN/SMC N terminal domain BD65_202 PF03776 Septum formation topological specificity factor MinE BD65_2020 PF00204 DNA gyrase B BD65_2020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_2020 PF18053 DNA gyrase B subunit insert domain BD65_2020 PF01751 Toprim domain BD65_2020 PF00986 DNA gyrase B subunit, carboxyl terminus BD65_2022 PF12566 Protein of unknown function (DUF3748) BD65_2022 PF07676 WD40-like Beta Propeller Repeat BD65_2023 PF07119 Protein of unknown function (DUF1375) BD65_2024 PF00011 Hsp20/alpha crystallin family BD65_2025 PF00011 Hsp20/alpha crystallin family BD65_2026 PF02080 TrkA-C domain BD65_2026 PF06826 Predicted Permease Membrane Region BD65_2027 PF00155 Aminotransferase class I and II BD65_2028 PF13488 Glycine zipper BD65_2028 PF00691 OmpA family BD65_203 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BD65_2032 PF03352 Methyladenine glycosylase BD65_2034 PF02091 Glycyl-tRNA synthetase alpha subunit BD65_2035 PF02092 Glycyl-tRNA synthetase beta subunit BD65_2035 PF05746 DALR anticodon binding domain BD65_2036 PF11254 Protein of unknown function (DUF3053) BD65_204 PF05209 Septum formation inhibitor MinC, N-terminal domain BD65_204 PF03775 Septum formation inhibitor MinC, C-terminal domain BD65_2042 PF02378 Phosphotransferase system, EIIC BD65_2042 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BD65_2042 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BD65_2043 PF01232 Mannitol dehydrogenase Rossmann domain BD65_2043 PF08125 Mannitol dehydrogenase C-terminal domain BD65_2044 PF05068 Mannitol repressor BD65_2045 PF10928 Protein of unknown function (DUF2810) BD65_2046 PF03475 3-alpha domain BD65_2046 PF03473 MOSC domain BD65_2047 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD65_2047 PF00672 HAMP domain BD65_2047 PF02203 Tar ligand binding domain homologue BD65_2048 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BD65_2048 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BD65_2049 PF02634 FdhD/NarQ family BD65_205 PF05166 YcgL domain BD65_2050 PF01568 Molydopterin dinucleotide binding domain BD65_2050 PF00384 Molybdopterin oxidoreductase BD65_2050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BD65_2051 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BD65_2051 PF00384 Molybdopterin oxidoreductase BD65_2051 PF01568 Molydopterin dinucleotide binding domain BD65_2052 PF13247 4Fe-4S dicluster domain BD65_2052 PF09163 Formate dehydrogenase N, transmembrane BD65_2053 PF01292 Prokaryotic cytochrome b561 BD65_2054 PF04216 Protein involved in formate dehydrogenase formation BD65_2055 PF12390 Selenocysteine synthase N terminal BD65_2055 PF03841 L-seryl-tRNA selenium transferase BD65_2056 PF03144 Elongation factor Tu domain 2 BD65_2056 PF09107 Elongation factor SelB, winged helix BD65_2056 PF00009 Elongation factor Tu GTP binding domain BD65_2056 PF09106 Elongation factor SelB, winged helix BD65_2057 PF01427 D-ala-D-ala dipeptidase BD65_2058 PF07690 Major Facilitator Superfamily BD65_2059 PF01757 Acyltransferase family BD65_206 PF01557 Fumarylacetoacetate (FAA) hydrolase family BD65_2060 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BD65_2061 PF01527 Transposase BD65_2063 PF01175 Urocanase Rossmann-like domain BD65_2063 PF17391 Urocanase N-terminal domain BD65_2063 PF17392 Urocanase C-terminal domain BD65_2064 PF00221 Aromatic amino acid lyase BD65_2065 PF00324 Amino acid permease BD65_2067 PF12146 Serine aminopeptidase, S33 BD65_2069 PF08019 Phosphoethanolamine transferase EptA/EptB BD65_2069 PF00884 Sulfatase BD65_207 PF12167 Arm DNA-binding domain BD65_207 PF00589 Phage integrase family BD65_2070 PF00072 Response regulator receiver domain BD65_2070 PF00196 Bacterial regulatory proteins, luxR family BD65_2071 PF05231 MASE1 BD65_2071 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_2071 PF07730 Histidine kinase BD65_2072 PF07690 Major Facilitator Superfamily BD65_2074 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BD65_2075 PF00528 Binding-protein-dependent transport system inner membrane component BD65_2076 PF00528 Binding-protein-dependent transport system inner membrane component BD65_2076 PF12911 N-terminal TM domain of oligopeptide transport permease C BD65_2077 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD65_2077 PF00005 ABC transporter BD65_2078 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD65_2078 PF00005 ABC transporter BD65_2079 PF11658 Cellulose biosynthesis protein BcsG BD65_208 PF03692 Putative zinc- or iron-chelating domain BD65_2080 PF11120 Cellulose biosynthesis protein BcsF BD65_2081 PF10995 Cellulose biosynthesis GIL BD65_2083 PF06564 Cellulose biosynthesis protein BcsQ BD65_2084 PF07238 PilZ domain BD65_2084 PF00535 Glycosyl transferase family 2 BD65_2084 PF03552 Cellulose synthase BD65_2085 PF03170 Bacterial cellulose synthase subunit BD65_2086 PF01270 Glycosyl hydrolases family 8 BD65_2087 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) BD65_2088 PF00990 Diguanylate cyclase, GGDEF domain BD65_2088 PF17154 Gammaproteobacterial periplasmic sensor domain BD65_2088 PF00563 EAL domain BD65_2088 PF00672 HAMP domain BD65_2089 PF00375 Sodium:dicarboxylate symporter family BD65_2090 PF00675 Insulinase (Peptidase family M16) BD65_2090 PF05193 Peptidase M16 inactive domain BD65_2091 PF00294 pfkB family carbohydrate kinase BD65_2092 PF01361 Tautomerase enzyme BD65_2093 PF00563 EAL domain BD65_2094 PF02611 CDP-diacylglycerol pyrophosphatase BD65_2095 PF03631 Virulence factor BrkB BD65_2096 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_2096 PF03466 LysR substrate binding domain BD65_2097 PF00375 Sodium:dicarboxylate symporter family BD65_2098 PF01053 Cys/Met metabolism PLP-dependent enzyme BD65_2099 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BD65_2099 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD65_21 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BD65_210 PF02600 Disulfide bond formation protein DsbB BD65_2100 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BD65_2101 PF01432 Peptidase family M3 BD65_2102 PF04445 Putative SAM-dependent methyltransferase BD65_2103 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BD65_2103 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BD65_2104 PF00582 Universal stress protein family BD65_2105 PF10625 Universal stress protein B (UspB) BD65_2106 PF01384 Phosphate transporter family BD65_2108 PF01810 LysE type translocator BD65_2109 PF00583 Acetyltransferase (GNAT) family BD65_211 PF06450 Bacterial Na+/H+ antiporter B (NhaB) BD65_2110 PF02678 Pirin BD65_2110 PF17954 Quercetinase C-terminal cupin domain BD65_2111 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BD65_2111 PF00356 Bacterial regulatory proteins, lacI family BD65_2112 PF02447 GntP family permease BD65_2113 PF01202 Shikimate kinase BD65_2114 PF01914 MarC family integral membrane protein BD65_2115 PF01118 Semialdehyde dehydrogenase, NAD binding domain BD65_2115 PF02774 Semialdehyde dehydrogenase, dimerisation domain BD65_2116 PF06580 Histidine kinase BD65_2116 PF07694 5TMR of 5TMR-LYT BD65_2117 PF00128 Alpha amylase, catalytic domain BD65_2117 PF02806 Alpha amylase, C-terminal all-beta domain BD65_2117 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BD65_2118 PF18390 Glycogen debranching enzyme C-terminal domain BD65_2118 PF00128 Alpha amylase, catalytic domain BD65_2118 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BD65_2119 PF00483 Nucleotidyl transferase BD65_212 PF00392 Bacterial regulatory proteins, gntR family BD65_212 PF07840 FadR C-terminal domain BD65_2120 PF00534 Glycosyl transferases group 1 BD65_2120 PF08323 Starch synthase catalytic domain BD65_2121 PF00343 Carbohydrate phosphorylase BD65_2122 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BD65_2122 PF01266 FAD dependent oxidoreductase BD65_2123 PF08220 DeoR-like helix-turn-helix domain BD65_2123 PF00455 DeoR C terminal sensor domain BD65_2124 PF01694 Rhomboid family BD65_2124 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease BD65_2125 PF00581 Rhodanese-like domain BD65_2126 PF17874 MalT-like TPR region BD65_2126 PF00196 Bacterial regulatory proteins, luxR family BD65_2127 PF00343 Carbohydrate phosphorylase BD65_2128 PF02446 4-alpha-glucanotransferase BD65_2129 PF01106 NifU-like domain BD65_2129 PF01521 Iron-sulphur cluster biosynthesis BD65_213 PF04293 SpoVR like protein BD65_2130 PF00156 Phosphoribosyl transferase domain BD65_2131 PF00561 alpha/beta hydrolase fold BD65_2133 PF09012 FeoC like transcriptional regulator BD65_2134 PF17910 FeoB cytosolic helical domain BD65_2134 PF02421 Ferrous iron transport protein B BD65_2134 PF07664 Ferrous iron transport protein B C terminus BD65_2134 PF07670 Nucleoside recognition BD65_2135 PF04023 FeoA domain BD65_2136 PF00575 S1 RNA binding domain BD65_2136 PF09371 Tex-like protein N-terminal domain BD65_2136 PF16921 Tex protein YqgF-like domain BD65_2136 PF17674 HHH domain BD65_214 PF01266 FAD dependent oxidoreductase BD65_2142 PF01272 Transcription elongation factor, GreA/GreB, C-term BD65_2142 PF03449 Transcription elongation factor, N-terminal BD65_2143 PF00486 Transcriptional regulatory protein, C terminal BD65_2143 PF00072 Response regulator receiver domain BD65_2144 PF00512 His Kinase A (phospho-acceptor) domain BD65_2144 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_2144 PF00672 HAMP domain BD65_2145 PF01293 Phosphoenolpyruvate carboxykinase BD65_2146 PF01430 Hsp33 protein BD65_2147 PF01479 S4 domain BD65_2148 PF13419 Haloacid dehalogenase-like hydrolase BD65_2149 PF07095 Intracellular growth attenuator protein IgaA BD65_215 PF01168 Alanine racemase, N-terminal domain BD65_215 PF00842 Alanine racemase, C-terminal domain BD65_2150 PF00293 NUDIX domain BD65_2151 PF00912 Transglycosylase BD65_2151 PF00905 Penicillin binding protein transpeptidase domain BD65_2151 PF17092 Penicillin-binding protein OB-like domain BD65_2156 PF03958 Bacterial type II/III secretion system short domain BD65_2156 PF00263 Bacterial type II and III secretion system protein BD65_2157 PF01202 Shikimate kinase BD65_2158 PF01761 3-dehydroquinate synthase BD65_2159 PF05036 Sporulation related domain BD65_216 PF07690 Major Facilitator Superfamily BD65_2160 PF02086 D12 class N6 adenine-specific DNA methyltransferase BD65_2161 PF00834 Ribulose-phosphate 3 epimerase family BD65_2162 PF13419 Haloacid dehalogenase-like hydrolase BD65_2163 PF00579 tRNA synthetases class I (W and Y) BD65_2164 PF10414 Sirohaem synthase dimerisation region BD65_2164 PF14824 Sirohaem biosynthesis protein central BD65_2164 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BD65_2165 PF01226 Formate/nitrite transporter BD65_2166 PF13806 Rieske-like [2Fe-2S] domain BD65_2167 PF18267 Rubredoxin NAD+ reductase C-terminal domain BD65_2167 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD65_2167 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BD65_2167 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BD65_2167 PF04324 BFD-like [2Fe-2S] binding domain BD65_2168 PF07969 Amidohydrolase family BD65_2169 PF07690 Major Facilitator Superfamily BD65_2172 PF00356 Bacterial regulatory proteins, lacI family BD65_2173 PF02056 Family 4 glycosyl hydrolase BD65_2173 PF11975 Family 4 glycosyl hydrolase C-terminal domain BD65_2174 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BD65_2175 PF00117 Glutamine amidotransferase class-I BD65_2176 PF00202 Aminotransferase class-III BD65_2177 PF12805 FUSC-like inner membrane protein yccS BD65_2178 PF00027 Cyclic nucleotide-binding domain BD65_2178 PF13545 Crp-like helix-turn-helix domain BD65_2179 PF02566 OsmC-like protein BD65_218 PF13426 PAS domain BD65_218 PF00990 Diguanylate cyclase, GGDEF domain BD65_218 PF00563 EAL domain BD65_2182 PF00156 Phosphoribosyl transferase domain BD65_2183 PF00291 Pyridoxal-phosphate dependent enzyme BD65_2184 PF00485 Phosphoribulokinase / Uridine kinase family BD65_2185 PF06794 Uncharacterised protein family (UPF0270) BD65_2186 PF00561 alpha/beta hydrolase fold BD65_2187 PF01810 LysE type translocator BD65_2188 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BD65_2189 PF00535 Glycosyl transferase family 2 BD65_219 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_219 PF03466 LysR substrate binding domain BD65_2190 PF12848 ABC transporter BD65_2190 PF00005 ABC transporter BD65_2191 PF02525 Flavodoxin-like fold BD65_2192 PF02254 TrkA-N domain BD65_2192 PF00999 Sodium/hydrogen exchanger family BD65_2193 PF09526 Probable metal-binding protein (DUF2387) BD65_2194 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BD65_2195 PF04102 SlyX BD65_2196 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BD65_2196 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BD65_2197 PF13309 HTH domain BD65_2197 PF08348 YheO-like PAS domain BD65_2198 PF02635 DsrE/DsrF-like family BD65_2199 PF02635 DsrE/DsrF-like family BD65_22 PF13380 CoA binding domain BD65_220 PF03306 Alpha-acetolactate decarboxylase BD65_2200 PF04077 DsrH like protein BD65_2201 PF00164 Ribosomal protein S12/S23 BD65_2202 PF00177 Ribosomal protein S7p/S5e BD65_2203 PF00009 Elongation factor Tu GTP binding domain BD65_2203 PF14492 Elongation Factor G, domain II BD65_2203 PF03764 Elongation factor G, domain IV BD65_2203 PF00679 Elongation factor G C-terminus BD65_2203 PF03144 Elongation factor Tu domain 2 BD65_2204 PF03143 Elongation factor Tu C-terminal domain BD65_2204 PF00009 Elongation factor Tu GTP binding domain BD65_2204 PF03144 Elongation factor Tu domain 2 BD65_2205 PF04324 BFD-like [2Fe-2S] binding domain BD65_2206 PF00210 Ferritin-like domain BD65_2207 PF00338 Ribosomal protein S10p/S20e BD65_2208 PF00297 Ribosomal protein L3 BD65_2209 PF00573 Ribosomal protein L4/L1 family BD65_221 PF00205 Thiamine pyrophosphate enzyme, central domain BD65_221 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BD65_221 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BD65_2210 PF00276 Ribosomal protein L23 BD65_2211 PF00181 Ribosomal Proteins L2, RNA binding domain BD65_2211 PF03947 Ribosomal Proteins L2, C-terminal domain BD65_2212 PF00203 Ribosomal protein S19 BD65_2213 PF00237 Ribosomal protein L22p/L17e BD65_2214 PF00189 Ribosomal protein S3, C-terminal domain BD65_2214 PF07650 KH domain BD65_2215 PF00252 Ribosomal protein L16p/L10e BD65_2216 PF00831 Ribosomal L29 protein BD65_2217 PF00366 Ribosomal protein S17 BD65_2218 PF00238 Ribosomal protein L14p/L23e BD65_2219 PF00467 KOW motif BD65_2219 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BD65_222 PF04285 Protein of unknown function (DUF444) BD65_2220 PF00281 Ribosomal protein L5 BD65_2220 PF00673 ribosomal L5P family C-terminus BD65_2221 PF00253 Ribosomal protein S14p/S29e BD65_2222 PF00410 Ribosomal protein S8 BD65_2223 PF00347 Ribosomal protein L6 BD65_2224 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BD65_2225 PF00333 Ribosomal protein S5, N-terminal domain BD65_2225 PF03719 Ribosomal protein S5, C-terminal domain BD65_2226 PF00327 Ribosomal protein L30p/L7e BD65_2227 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BD65_2228 PF00344 SecY translocase BD65_2229 PF00444 Ribosomal protein L36 BD65_223 PF06798 PrkA serine protein kinase C-terminal domain BD65_223 PF08298 PrkA AAA domain BD65_2230 PF00416 Ribosomal protein S13/S18 BD65_2231 PF00411 Ribosomal protein S11 BD65_2232 PF00163 Ribosomal protein S4/S9 N-terminal domain BD65_2232 PF01479 S4 domain BD65_2233 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BD65_2233 PF01000 RNA polymerase Rpb3/RpoA insert domain BD65_2233 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BD65_2234 PF01196 Ribosomal protein L17 BD65_2235 PF13411 MerR HTH family regulatory protein BD65_2236 PF03889 Alternative ribosome-rescue factor A BD65_2237 PF01741 Large-conductance mechanosensitive channel, MscL BD65_2238 PF02254 TrkA-N domain BD65_2238 PF02080 TrkA-C domain BD65_2239 PF01029 NusB family BD65_2239 PF01189 16S rRNA methyltransferase RsmB/F BD65_224 PF06629 MltA-interacting protein MipA BD65_2240 PF02911 Formyl transferase, C-terminal domain BD65_2240 PF00551 Formyl transferase BD65_2241 PF01327 Polypeptide deformylase BD65_2242 PF02481 DNA recombination-mediator protein A BD65_2242 PF17782 DprA winged helix domain BD65_2243 PF04361 Protein of unknown function (DUF494) BD65_2244 PF01396 Topoisomerase DNA binding C4 zinc finger BD65_2245 PF01300 Telomere recombination BD65_2246 PF08501 Shikimate dehydrogenase substrate binding domain BD65_2246 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BD65_2246 PF01488 Shikimate / quinate 5-dehydrogenase BD65_2247 PF00132 Bacterial transferase hexapeptide (six repeats) BD65_225 PF00884 Sulfatase BD65_2252 PF00474 Sodium:solute symporter family BD65_2253 PF04341 Protein of unknown function, DUF485 BD65_2254 PF13193 AMP-binding enzyme C-terminal domain BD65_2254 PF00501 AMP-binding enzyme BD65_2254 PF16177 Acetyl-coenzyme A synthetase N-terminus BD65_2255 PF00375 Sodium:dicarboxylate symporter family BD65_2258 PF11412 Disulphide bond corrector protein DsbC BD65_2258 PF02683 Cytochrome C biogenesis protein transmembrane region BD65_2259 PF03091 CutA1 divalent ion tolerance protein BD65_226 PF01263 Aldose 1-epimerase BD65_2260 PF03605 Anaerobic c4-dicarboxylate membrane transporter BD65_2261 PF10415 Fumarase C C-terminus BD65_2261 PF00206 Lyase BD65_2262 PF04186 FxsA cytoplasmic membrane protein BD65_2263 PF00166 Chaperonin 10 Kd subunit BD65_2264 PF00118 TCP-1/cpn60 chaperonin family BD65_2265 PF13698 Domain of unknown function (DUF4156) BD65_2266 PF04055 Radical SAM superfamily BD65_2267 PF08207 Elongation factor P (EF-P) KOW-like domain BD65_2267 PF09285 Elongation factor P, C-terminal BD65_2267 PF01132 Elongation factor P (EF-P) OB domain BD65_2268 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BD65_2268 PF18416 N-acetylglucosamine binding protein domain 2 BD65_2269 PF00196 Bacterial regulatory proteins, luxR family BD65_227 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BD65_227 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BD65_2271 PF02753 Pili assembly chaperone PapD, C-terminal domain BD65_2271 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BD65_2272 PF13954 PapC N-terminal domain BD65_2272 PF00577 Outer membrane usher protein BD65_2272 PF13953 PapC C-terminal domain BD65_2273 PF00419 Fimbrial protein BD65_2274 PF00893 Small Multidrug Resistance protein BD65_2275 PF08212 Lipocalin-like domain BD65_2276 PF02313 Fumarate reductase subunit D BD65_2277 PF02300 Fumarate reductase subunit C BD65_2278 PF13183 4Fe-4S dicluster domain BD65_2278 PF13085 2Fe-2S iron-sulfur cluster binding domain BD65_2279 PF00890 FAD binding domain BD65_2279 PF02910 Fumarate reductase flavoprotein C-term BD65_228 PF01641 SelR domain BD65_2280 PF00152 tRNA synthetases class II (D, K and N) BD65_2281 PF12795 Mechanosensitive ion channel porin domain BD65_2281 PF12794 Mechanosensitive ion channel inner membrane domain 1 BD65_2281 PF00924 Mechanosensitive ion channel BD65_2282 PF02666 Phosphatidylserine decarboxylase BD65_2283 PF03193 RsgA GTPase BD65_2284 PF00929 Exonuclease BD65_2288 PF08331 Domain of unknown function (DUF1730) BD65_2289 PF01256 Carbohydrate kinase BD65_2289 PF03853 YjeF-related protein N-terminus BD65_229 PF07023 Protein of unknown function (DUF1315) BD65_2290 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BD65_2291 PF01520 N-acetylmuramoyl-L-alanine amidase BD65_2292 PF08676 MutL C terminal dimerisation domain BD65_2292 PF01119 DNA mismatch repair protein, C-terminal domain BD65_2294 PF17209 Hfq protein BD65_2295 PF01926 50S ribosome-binding GTPase BD65_2295 PF16360 GTP-binding GTPase Middle Region BD65_2295 PF13167 GTP-binding GTPase N-terminal BD65_2296 PF12221 Bacterial membrane protein N terminal BD65_2296 PF01145 SPFH domain / Band 7 family BD65_2297 PF01145 SPFH domain / Band 7 family BD65_2298 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) BD65_2299 PF00709 Adenylosuccinate synthetase BD65_23 PF08755 Hemimethylated DNA-binding protein YccV like BD65_230 PF00857 Isochorismatase family BD65_2300 PF02082 Transcriptional regulator BD65_2301 PF08206 Ribonuclease B OB domain BD65_2301 PF17876 Cold shock domain BD65_2301 PF08461 Ribonuclease R winged-helix domain BD65_2301 PF00575 S1 RNA binding domain BD65_2301 PF00773 RNB domain BD65_2302 PF00588 SpoU rRNA Methylase family BD65_2302 PF08032 RNA 2'-O ribose methyltransferase substrate binding BD65_2306 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BD65_2307 PF13954 PapC N-terminal domain BD65_2307 PF00577 Outer membrane usher protein BD65_2307 PF13953 PapC C-terminal domain BD65_231 PF17763 Glutaminase/Asparaginase C-terminal domain BD65_231 PF00710 Asparaginase, N-terminal BD65_2311 PF00326 Prolyl oligopeptidase family BD65_2313 PF01250 Ribosomal protein S6 BD65_2314 PF01084 Ribosomal protein S18 BD65_2315 PF03948 Ribosomal protein L9, C-terminal domain BD65_2315 PF01281 Ribosomal protein L9, N-terminal domain BD65_2316 PF04225 Opacity-associated protein A LysM-like domain BD65_2316 PF08525 Opacity-associated protein A N-terminal motif BD65_2317 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BD65_2317 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BD65_2318 PF01814 Hemerythrin HHE cation binding domain BD65_2318 PF04405 Domain of Unknown function (DUF542) BD65_2319 PF00149 Calcineurin-like phosphoesterase BD65_2319 PF02872 5'-nucleotidase, C-terminal domain BD65_232 PF01343 Peptidase family S49 BD65_2320 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) BD65_2321 PF00459 Inositol monophosphatase family BD65_2322 PF06526 Protein of unknown function (DUF1107) BD65_2323 PF01595 Cyclin M transmembrane N-terminal domain BD65_2323 PF03471 Transporter associated domain BD65_2323 PF00571 CBS domain BD65_2324 PF01625 Peptide methionine sulfoxide reductase BD65_2325 PF01103 Surface antigen BD65_2325 PF07244 Surface antigen variable number repeat BD65_2325 PF17243 POTRA domain TamA domain 1 BD65_2326 PF04357 TamB, inner membrane protein subunit of TAM complex BD65_2327 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BD65_2328 PF00719 Inorganic pyrophosphatase BD65_2329 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BD65_233 PF00881 Nitroreductase family BD65_2330 PF01225 Mur ligase family, catalytic domain BD65_2330 PF02875 Mur ligase family, glutamate ligase domain BD65_2330 PF08245 Mur ligase middle domain BD65_2331 PF02863 Arginine repressor, C-terminal domain BD65_2331 PF01316 Arginine repressor, DNA binding domain BD65_2332 PF00056 lactate/malate dehydrogenase, NAD binding domain BD65_2332 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BD65_2333 PF13693 Winged helix-turn-helix DNA-binding BD65_2336 PF00348 Polyprenyl synthetase BD65_2337 PF00829 Ribosomal prokaryotic L21 protein BD65_2338 PF01016 Ribosomal L27 protein BD65_2339 PF00892 EamA-like transporter family BD65_234 PF02769 AIR synthase related protein, C-terminal domain BD65_234 PF00586 AIR synthase related protein, N-terminal domain BD65_2340 PF01018 GTP1/OBG BD65_2340 PF01926 50S ribosome-binding GTPase BD65_2341 PF00512 His Kinase A (phospho-acceptor) domain BD65_2341 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_2341 PF00672 HAMP domain BD65_2342 PF00072 Response regulator receiver domain BD65_2342 PF00486 Transcriptional regulatory protein, C terminal BD65_2343 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BD65_2344 PF01272 Transcription elongation factor, GreA/GreB, C-term BD65_2344 PF03449 Transcription elongation factor, N-terminal BD65_2345 PF01985 CRS1 / YhbY (CRM) domain BD65_2346 PF01728 FtsJ-like methyltransferase BD65_2347 PF01434 Peptidase family M41 BD65_2347 PF06480 FtsH Extracellular BD65_2347 PF17862 AAA+ lid domain BD65_2347 PF00004 ATPase family associated with various cellular activities (AAA) BD65_2348 PF00809 Pterin binding enzyme BD65_2349 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BD65_2349 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BD65_2349 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BD65_2349 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BD65_235 PF01131 DNA topoisomerase BD65_235 PF01751 Toprim domain BD65_2350 PF03840 Preprotein translocase SecG subunit BD65_2353 PF02576 RimP N-terminal domain BD65_2353 PF17384 RimP C-terminal SH3 domain BD65_2354 PF00575 S1 RNA binding domain BD65_2354 PF08529 NusA N-terminal domain BD65_2354 PF13184 NusA-like KH domain BD65_2355 PF04760 Translation initiation factor IF-2, N-terminal region BD65_2355 PF08364 Bacterial translation initiation factor IF-2 associated region BD65_2355 PF11987 Translation-initiation factor 2 BD65_2355 PF03144 Elongation factor Tu domain 2 BD65_2355 PF00009 Elongation factor Tu GTP binding domain BD65_2356 PF02033 Ribosome-binding factor A BD65_2357 PF09157 Pseudouridine synthase II TruB, C-terminal BD65_2357 PF01509 TruB family pseudouridylate synthase (N terminal domain) BD65_2357 PF16198 tRNA pseudouridylate synthase B C-terminal domain BD65_2358 PF00312 Ribosomal protein S15 BD65_2359 PF00013 KH domain BD65_2359 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BD65_2359 PF00575 S1 RNA binding domain BD65_2359 PF03725 3' exoribonuclease family, domain 2 BD65_2359 PF01138 3' exoribonuclease family, domain 1 BD65_236 PF00293 NUDIX domain BD65_2360 PF07719 Tetratricopeptide repeat BD65_2360 PF13181 Tetratricopeptide repeat BD65_2361 PF12343 Cold shock protein DEAD box A BD65_2361 PF03880 DbpA RNA binding domain BD65_2361 PF00270 DEAD/DEAH box helicase BD65_2361 PF00271 Helicase conserved C-terminal domain BD65_2362 PF00296 Luciferase-like monooxygenase BD65_2364 PF03313 Serine dehydratase alpha chain BD65_2368 PF01541 GIY-YIG catalytic domain BD65_2369 PF13508 Acetyltransferase (GNAT) domain BD65_237 PF07383 Protein of unknown function (DUF1496) BD65_2370 PF13520 Amino acid permease BD65_2371 PF01276 Orn/Lys/Arg decarboxylase, major domain BD65_2371 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BD65_2371 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BD65_2374 PF12706 Beta-lactamase superfamily domain BD65_2375 PF13460 NAD(P)H-binding BD65_2377 PF07969 Amidohydrolase family BD65_2378 PF00005 ABC transporter BD65_2379 PF00005 ABC transporter BD65_238 PF03372 Endonuclease/Exonuclease/phosphatase family BD65_2380 PF06007 Phosphonate metabolism protein PhnJ BD65_2381 PF05861 Bacterial phosphonate metabolism protein (PhnI) BD65_2382 PF05845 Bacterial phosphonate metabolism protein (PhnH) BD65_2383 PF06754 Phosphonate metabolism protein PhnG BD65_2386 PF13597 Anaerobic ribonucleoside-triphosphate reductase BD65_2386 PF03477 ATP cone domain BD65_2387 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BD65_2387 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BD65_2388 PF06877 Regulator of ribonuclease activity B BD65_2389 PF00583 Acetyltransferase (GNAT) family BD65_2390 PF10458 Valyl tRNA synthetase tRNA binding arm BD65_2390 PF00133 tRNA synthetases class I (I, L, M and V) BD65_2390 PF08264 Anticodon-binding domain of tRNA BD65_2391 PF04364 DNA polymerase III chi subunit, HolC BD65_2392 PF02789 Cytosol aminopeptidase family, N-terminal domain BD65_2392 PF00883 Cytosol aminopeptidase family, catalytic domain BD65_2393 PF03739 Lipopolysaccharide export system permease LptF/LptG BD65_2394 PF03739 Lipopolysaccharide export system permease LptF/LptG BD65_2396 PF13356 Arm DNA-binding domain BD65_2396 PF00589 Phage integrase family BD65_24 PF17785 PUA-like domain BD65_24 PF10672 S-adenosylmethionine-dependent methyltransferase BD65_240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_240 PF03466 LysR substrate binding domain BD65_2410 PF01527 Transposase BD65_2411 PF13276 HTH-like domain BD65_2411 PF13683 Integrase core domain BD65_2412 PF13333 Integrase core domain BD65_2412 PF13276 HTH-like domain BD65_2412 PF00665 Integrase core domain BD65_2413 PF01527 Transposase BD65_2415 PF11867 Domain of unknown function (DUF3387) BD65_2415 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BD65_2415 PF18766 SWI2/SNF2 ATPase BD65_2420 PF02384 N-6 DNA Methylase BD65_2420 PF12161 HsdM N-terminal domain BD65_2422 PF13356 Arm DNA-binding domain BD65_2422 PF00589 Phage integrase family BD65_2427 PF01527 Transposase BD65_2428 PF01344 Kelch motif BD65_2429 PF06178 Oligogalacturonate-specific porin protein (KdgM) BD65_243 PF01842 ACT domain BD65_243 PF00551 Formyl transferase BD65_2430 PF02278 Polysaccharide lyase family 8, super-sandwich domain BD65_2430 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain BD65_2430 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain BD65_2433 PF02278 Polysaccharide lyase family 8, super-sandwich domain BD65_2433 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain BD65_2433 PF09092 Lyase, N terminal BD65_2433 PF09093 Lyase, catalytic BD65_2434 PF00884 Sulfatase BD65_2435 PF08220 DeoR-like helix-turn-helix domain BD65_2435 PF00455 DeoR C terminal sensor domain BD65_2436 PF08013 Tagatose 6 phosphate kinase BD65_2437 PF01380 SIS domain BD65_2438 PF03830 PTS system sorbose subfamily IIB component BD65_2439 PF03609 PTS system sorbose-specific iic component BD65_244 PF02810 SEC-C motif BD65_2440 PF03613 PTS system mannose/fructose/sorbose family IID component BD65_2442 PF01979 Amidohydrolase family BD65_2443 PF04962 KduI/IolB family BD65_2446 PF04055 Radical SAM superfamily BD65_2446 PF13186 Iron-sulfur cluster-binding domain BD65_2447 PF00884 Sulfatase BD65_2449 PF01116 Fructose-bisphosphate aldolase class-II BD65_245 PF01734 Patatin-like phospholipase BD65_2451 PF10696 Protein of unknown function (DUF2501) BD65_2452 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BD65_2454 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BD65_2455 PF00873 AcrB/AcrD/AcrF family BD65_2456 PF00465 Iron-containing alcohol dehydrogenase BD65_2457 PF02733 Dak1 domain BD65_2458 PF02734 DAK2 domain BD65_2459 PF00381 PTS HPr component phosphorylation site BD65_2459 PF03610 PTS system fructose IIA component BD65_2459 PF05524 PEP-utilising enzyme, N-terminal BD65_2459 PF00391 PEP-utilising enzyme, mobile domain BD65_246 PF00072 Response regulator receiver domain BD65_2460 PF00989 PAS fold BD65_2460 PF02954 Bacterial regulatory protein, Fis family BD65_2460 PF00158 Sigma-54 interaction domain BD65_2461 PF00990 Diguanylate cyclase, GGDEF domain BD65_2462 PF07256 Protein of unknown function (DUF1435) BD65_2466 PF05175 Methyltransferase small domain BD65_2466 PF08468 Methyltransferase small domain N-terminal BD65_2467 PF03603 DNA polymerase III psi subunit BD65_2468 PF00583 Acetyltransferase (GNAT) family BD65_2469 PF16658 Class II release factor RF3, C-terminal domain BD65_2469 PF00009 Elongation factor Tu GTP binding domain BD65_2469 PF03144 Elongation factor Tu domain 2 BD65_247 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BD65_247 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BD65_247 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BD65_2470 PF04972 BON domain BD65_2471 PF07043 Protein of unknown function (DUF1328) BD65_2472 PF01734 Patatin-like phospholipase BD65_2473 PF01026 TatD related DNase BD65_2474 PF07662 Na+ dependent nucleoside transporter C-terminus BD65_2474 PF07670 Nucleoside recognition BD65_2474 PF01773 Na+ dependent nucleoside transporter N-terminus BD65_2475 PF01791 DeoC/LacD family aldolase BD65_2476 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BD65_2476 PF02885 Glycosyl transferase family, helical bundle domain BD65_2476 PF00591 Glycosyl transferase family, a/b domain BD65_2477 PF01676 Metalloenzyme superfamily BD65_2478 PF01048 Phosphorylase superfamily BD65_2479 PF10144 Bacterial virulence factor haemolysin BD65_248 PF00816 H-NS histone family BD65_2480 PF18429 Domain of unknown function (DUF5609) BD65_2481 PF18073 Rubredoxin metal binding domain BD65_2482 PF01381 Helix-turn-helix BD65_2482 PF13521 AAA domain BD65_2483 PF12848 ABC transporter BD65_2483 PF00005 ABC transporter BD65_2484 PF00689 Cation transporting ATPase, C-terminus BD65_2484 PF00690 Cation transporter/ATPase, N-terminus BD65_2485 PF14718 Soluble lytic murein transglycosylase L domain BD65_2485 PF01464 Transglycosylase SLT domain BD65_2486 PF01371 Trp repressor protein BD65_2487 PF01931 Protein of unknown function DUF84 BD65_2488 PF12833 Helix-turn-helix domain BD65_2488 PF06445 GyrI-like small molecule binding domain BD65_2489 PF00300 Histidine phosphatase superfamily (branch 1) BD65_249 PF00265 Thymidine kinase BD65_2490 PF05981 CreA protein BD65_2491 PF00072 Response regulator receiver domain BD65_2491 PF00486 Transcriptional regulatory protein, C terminal BD65_2492 PF03447 Homoserine dehydrogenase, NAD binding domain BD65_2492 PF00742 Homoserine dehydrogenase BD65_2492 PF13840 ACT domain BD65_2492 PF01842 ACT domain BD65_2492 PF00696 Amino acid kinase family BD65_2493 PF00288 GHMP kinases N terminal domain BD65_2493 PF08544 GHMP kinases C terminal BD65_2494 PF14821 Threonine synthase N terminus BD65_2494 PF00291 Pyridoxal-phosphate dependent enzyme BD65_2495 PF03883 Peroxide stress protein YaaA BD65_2496 PF00923 Transaldolase/Fructose-6-phosphate aldolase BD65_2497 PF00994 Probable molybdopterin binding domain BD65_2498 PF07690 Major Facilitator Superfamily BD65_25 PF00708 Acylphosphatase BD65_250 PF00465 Iron-containing alcohol dehydrogenase BD65_250 PF00171 Aldehyde dehydrogenase family BD65_2500 PF01184 GPR1/FUN34/yaaH family BD65_2501 PF00012 Hsp70 protein BD65_2502 PF00684 DnaJ central domain BD65_2502 PF01556 DnaJ C terminal domain BD65_2502 PF00226 DnaJ domain BD65_2503 PF06965 Na+/H+ antiporter 1 BD65_2504 PF03466 LysR substrate binding domain BD65_2504 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_2505 PF01649 Ribosomal protein S20 BD65_2506 PF06574 FAD synthetase BD65_2506 PF01687 Riboflavin kinase BD65_2507 PF00133 tRNA synthetases class I (I, L, M and V) BD65_2507 PF06827 Zinc finger found in FPG and IleRS BD65_2507 PF08264 Anticodon-binding domain of tRNA BD65_2508 PF01252 Signal peptidase (SPase) II BD65_2509 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BD65_251 PF01914 MarC family integral membrane protein BD65_2510 PF02401 LytB protein BD65_2511 PF05173 Dihydrodipicolinate reductase, C-terminus BD65_2511 PF01113 Dihydrodipicolinate reductase, N-terminus BD65_2512 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BD65_2512 PF00117 Glutamine amidotransferase class-I BD65_2513 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BD65_2513 PF02142 MGS-like domain BD65_2513 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BD65_2514 PF01810 LysE type translocator BD65_2516 PF06738 Putative threonine/serine exporter BD65_2517 PF12821 Threonine/Serine exporter, ThrE BD65_2518 PF00186 Dihydrofolate reductase BD65_252 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BD65_2520 PF00149 Calcineurin-like phosphoesterase BD65_2521 PF04379 ApaG domain BD65_2522 PF00398 Ribosomal RNA adenine dimethylase BD65_2523 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BD65_2524 PF09312 SurA N-terminal domain BD65_2524 PF00639 PPIC-type PPIASE domain BD65_2525 PF04453 LPS transport system D BD65_2525 PF03968 OstA-like protein BD65_2526 PF05099 Tellurite resistance protein TerB BD65_2526 PF00226 DnaJ domain BD65_2527 PF00849 RNA pseudouridylate synthase BD65_2528 PF18337 RapA N-terminal Tudor like domain BD65_2528 PF12137 RNA polymerase recycling family C-terminal BD65_2528 PF00176 SNF2 family N-terminal domain BD65_2528 PF18339 RapA N-terminal Tudor like domain 1 BD65_2528 PF00271 Helicase conserved C-terminal domain BD65_2529 PF00136 DNA polymerase family B BD65_2529 PF03104 DNA polymerase family B, exonuclease domain BD65_253 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BD65_2530 PF00005 ABC transporter BD65_2531 PF09335 SNARE associated Golgi protein BD65_2532 PF00528 Binding-protein-dependent transport system inner membrane component BD65_2534 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BD65_2534 PF12793 Sugar transport-related sRNA regulator N-term BD65_2536 PF07690 Major Facilitator Superfamily BD65_2537 PF00694 Aconitase C-terminal domain BD65_2538 PF00330 Aconitase family (aconitate hydratase) BD65_2539 PF00180 Isocitrate/isopropylmalate dehydrogenase BD65_254 PF00528 Binding-protein-dependent transport system inner membrane component BD65_2540 PF00682 HMGL-like BD65_2540 PF08502 LeuA allosteric (dimerisation) domain BD65_2541 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_2541 PF03466 LysR substrate binding domain BD65_2542 PF00501 AMP-binding enzyme BD65_2543 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BD65_2543 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BD65_2543 PF00205 Thiamine pyrophosphate enzyme, central domain BD65_2544 PF10369 Small subunit of acetolactate synthase BD65_2545 PF00356 Bacterial regulatory proteins, lacI family BD65_2545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BD65_2546 PF06610 L-alanine exporter BD65_2547 PF02381 MraZ protein, putative antitoxin-like BD65_2548 PF01795 MraW methylase family BD65_2549 PF04999 Cell division protein FtsL BD65_255 PF12911 N-terminal TM domain of oligopeptide transport permease C BD65_255 PF00528 Binding-protein-dependent transport system inner membrane component BD65_2550 PF03717 Penicillin-binding Protein dimerisation domain BD65_2550 PF00905 Penicillin binding protein transpeptidase domain BD65_2551 PF02875 Mur ligase family, glutamate ligase domain BD65_2551 PF01225 Mur ligase family, catalytic domain BD65_2551 PF08245 Mur ligase middle domain BD65_2552 PF02875 Mur ligase family, glutamate ligase domain BD65_2552 PF08245 Mur ligase middle domain BD65_2552 PF01225 Mur ligase family, catalytic domain BD65_2553 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BD65_2553 PF00953 Glycosyl transferase family 4 BD65_2554 PF08245 Mur ligase middle domain BD65_2554 PF02875 Mur ligase family, glutamate ligase domain BD65_2555 PF01098 Cell cycle protein BD65_2556 PF03033 Glycosyltransferase family 28 N-terminal domain BD65_2556 PF04101 Glycosyltransferase family 28 C-terminal domain BD65_2557 PF02875 Mur ligase family, glutamate ligase domain BD65_2557 PF01225 Mur ligase family, catalytic domain BD65_2557 PF08245 Mur ligase middle domain BD65_2558 PF01820 D-ala D-ala ligase N-terminus BD65_2558 PF07478 D-ala D-ala ligase C-terminus BD65_2559 PF03799 Cell division protein FtsQ BD65_2559 PF08478 POTRA domain, FtsQ-type BD65_256 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD65_256 PF00005 ABC transporter BD65_2560 PF02491 SHS2 domain inserted in FTSA BD65_2561 PF00091 Tubulin/FtsZ family, GTPase domain BD65_2561 PF12327 FtsZ family, C-terminal domain BD65_2562 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BD65_2564 PF06558 Secretion monitor precursor protein (SecM) BD65_2565 PF07517 SecA DEAD-like domain BD65_2565 PF02810 SEC-C motif BD65_2565 PF01043 SecA preprotein cross-linking domain BD65_2565 PF07516 SecA Wing and Scaffold domain BD65_2566 PF00293 NUDIX domain BD65_2567 PF03884 DNA gyrase inhibitor YacG BD65_2568 PF07072 Cell division protein BD65_2569 PF01121 Dephospho-CoA kinase BD65_257 PF00005 ABC transporter BD65_257 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD65_2570 PF00478 IMP dehydrogenase / GMP reductase domain BD65_2571 PF00482 Type II secretion system (T2SS), protein F BD65_2572 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BD65_2572 PF00437 Type II/IV secretion system protein BD65_2573 PF07963 Prokaryotic N-terminal methylation motif BD65_2574 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BD65_2574 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BD65_2575 PF01510 N-acetylmuramoyl-L-alanine amidase BD65_2576 PF17113 Regulatory signalling modulator protein AmpE BD65_2577 PF02369 Bacterial Ig-like domain (group 1) BD65_2577 PF02368 Bacterial Ig-like domain (group 2) BD65_2577 PF11924 Inverse autotransporter, beta-domain BD65_2577 PF07979 Intimin C-type lectin domain BD65_2577 PF01476 LysM domain BD65_2578 PF00324 Amino acid permease BD65_2579 PF00392 Bacterial regulatory proteins, gntR family BD65_2579 PF07729 FCD domain BD65_258 PF04269 Protein of unknown function, DUF440 BD65_2580 PF17831 Pyruvate dehydrogenase E1 component middle domain BD65_2580 PF00456 Transketolase, thiamine diphosphate binding domain BD65_2581 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BD65_2581 PF02817 e3 binding domain BD65_2581 PF00364 Biotin-requiring enzyme BD65_2582 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BD65_2582 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD65_2584 PF11791 Aconitate B N-terminal domain BD65_2584 PF06434 Aconitate hydratase 2 N-terminus BD65_2584 PF00330 Aconitase family (aconitate hydratase) BD65_2585 PF06062 Uncharacterised protein family (UPF0231) BD65_2586 PF00892 EamA-like transporter family BD65_2587 PF02675 S-adenosylmethionine decarboxylase BD65_2588 PF17284 Spermidine synthase tetramerisation domain BD65_2589 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) BD65_259 PF13091 PLD-like domain BD65_259 PF13396 Phospholipase_D-nuclease N-terminal BD65_2590 PF00394 Multicopper oxidase BD65_2590 PF07732 Multicopper oxidase BD65_2590 PF07731 Multicopper oxidase BD65_2590 PF10518 TAT (twin-arginine translocation) pathway signal sequence BD65_2591 PF00156 Phosphoribosyl transferase domain BD65_2592 PF00484 Carbonic anhydrase BD65_2593 PF00005 ABC transporter BD65_2594 PF01061 ABC-2 type transporter BD65_2595 PF01522 Polysaccharide deacetylase BD65_2596 PF02261 Aspartate decarboxylase BD65_2597 PF02569 Pantoate-beta-alanine ligase BD65_2598 PF02548 Ketopantoate hydroxymethyltransferase BD65_2599 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BD65_26 PF04358 DsrC like protein BD65_2600 PF12626 Polymerase A arginine-rich C-terminus BD65_2600 PF12627 Probable RNA and SrmB- binding site of polymerase A BD65_2600 PF01743 Poly A polymerase head domain BD65_2601 PF00749 tRNA synthetases class I (E and Q), catalytic domain BD65_2602 PF01258 Prokaryotic dksA/traR C4-type zinc finger BD65_2603 PF03749 Sugar fermentation stimulation protein RE domain BD65_2603 PF17746 SfsA N-terminal OB domain BD65_2604 PF02834 LigT like Phosphoesterase BD65_2605 PF00270 DEAD/DEAH box helicase BD65_2605 PF00271 Helicase conserved C-terminal domain BD65_2605 PF08482 ATP-dependent helicase C-terminal BD65_2605 PF04408 Helicase associated domain (HA2) BD65_2606 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal BD65_2606 PF14814 Bifunctional transglycosylase second domain BD65_2606 PF00912 Transglycosylase BD65_2606 PF00905 Penicillin binding protein transpeptidase domain BD65_2607 PF00202 Aminotransferase class-III BD65_2608 PF00654 Voltage gated chloride channel BD65_2609 PF01521 Iron-sulphur cluster biosynthesis BD65_2610 PF03458 UPF0126 domain BD65_2611 PF01497 Periplasmic binding protein BD65_2612 PF01048 Phosphorylase superfamily BD65_2613 PF13286 Phosphohydrolase-associated domain BD65_2613 PF01966 HD domain BD65_2614 PF00595 PDZ domain BD65_2615 PF00512 His Kinase A (phospho-acceptor) domain BD65_2615 PF01627 Hpt domain BD65_2615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_2615 PF00672 HAMP domain BD65_2615 PF00072 Response regulator receiver domain BD65_2615 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BD65_2616 PF05958 tRNA (Uracil-5-)-methyltransferase BD65_2616 PF01938 TRAM domain BD65_2617 PF13291 ACT domain BD65_2617 PF04607 Region found in RelA / SpoT proteins BD65_2617 PF02824 TGS domain BD65_2618 PF03819 MazG nucleotide pyrophosphohydrolase domain BD65_2619 PF00117 Glutamine amidotransferase class-I BD65_2619 PF06418 CTP synthase N-terminus BD65_2620 PF03952 Enolase, N-terminal domain BD65_2620 PF00113 Enolase, C-terminal TIM barrel domain BD65_2621 PF04055 Radical SAM superfamily BD65_2622 PF01242 6-pyruvoyl tetrahydropterin synthase BD65_2623 PF00175 Oxidoreductase NAD-binding domain BD65_2623 PF00258 Flavodoxin BD65_2623 PF00667 FAD binding domain BD65_2624 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BD65_2624 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BD65_2625 PF01507 Phosphoadenosine phosphosulfate reductase family BD65_2628 PF04389 Peptidase family M28 BD65_2629 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BD65_2629 PF14824 Sirohaem biosynthesis protein central BD65_2629 PF10414 Sirohaem synthase dimerisation region BD65_263 PF03795 YCII-related domain BD65_2630 PF01507 Phosphoadenosine phosphosulfate reductase family BD65_2631 PF00009 Elongation factor Tu GTP binding domain BD65_2633 PF12084 Protein of unknown function (DUF3561) BD65_2634 PF04977 Septum formation initiator BD65_2635 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BD65_2636 PF02542 YgbB family BD65_2637 PF01142 tRNA pseudouridine synthase D (TruD) BD65_2638 PF01975 Survival protein SurE BD65_2640 PF01551 Peptidase family M23 BD65_2640 PF01476 LysM domain BD65_2641 PF04539 Sigma-70 region 3 BD65_2641 PF04542 Sigma-70 region 2 BD65_2641 PF00140 Sigma-70 factor, region 1.2 BD65_2641 PF04545 Sigma-70, region 4 BD65_2642 PF05190 MutS family domain IV BD65_2642 PF05192 MutS domain III BD65_2642 PF00488 MutS domain V BD65_2642 PF01624 MutS domain I BD65_2642 PF05188 MutS domain II BD65_2649 PF01548 Transposase BD65_2649 PF02371 Transposase IS116/IS110/IS902 family BD65_2651 PF00665 Integrase core domain BD65_2651 PF13936 Helix-turn-helix domain BD65_2653 PF00512 His Kinase A (phospho-acceptor) domain BD65_2653 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_2653 PF00072 Response regulator receiver domain BD65_2653 PF09308 LuxQ, periplasmic BD65_2654 PF00196 Bacterial regulatory proteins, luxR family BD65_2654 PF00072 Response regulator receiver domain BD65_2657 PF01464 Transglycosylase SLT domain BD65_266 PF00486 Transcriptional regulatory protein, C terminal BD65_2661 PF01514 Secretory protein of YscJ/FliF family BD65_2665 PF12833 Helix-turn-helix domain BD65_2667 PF07201 HrpJ-like domain BD65_2668 PF00771 FHIPEP family BD65_2670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BD65_2670 PF18269 T3SS EscN ATPase C-terminal domain BD65_2670 PF02874 ATP synthase alpha/beta family, beta-barrel domain BD65_2673 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BD65_2674 PF00813 FliP family BD65_2675 PF01313 Bacterial export proteins, family 3 BD65_2676 PF01311 Bacterial export proteins, family 1 BD65_2677 PF01312 FlhB HrpN YscU SpaS Family BD65_2678 PF07720 Tetratricopeptide repeat BD65_268 PF02753 Pili assembly chaperone PapD, C-terminal domain BD65_268 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BD65_2683 PF00550 Phosphopantetheine attachment site BD65_2687 PF18416 N-acetylglucosamine binding protein domain 2 BD65_2687 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BD65_2688 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) BD65_2689 PF01478 Type IV leader peptidase family BD65_2689 PF06750 Bacterial Peptidase A24 N-terminal domain BD65_269 PF00577 Outer membrane usher protein BD65_269 PF13954 PapC N-terminal domain BD65_269 PF13953 PapC C-terminal domain BD65_2691 PF12693 GspL periplasmic domain BD65_2691 PF05134 Type II secretion system (T2SS), protein L BD65_2692 PF03934 Type II secretion system (T2SS), protein K BD65_2693 PF11612 Type II secretion system (T2SS), protein J BD65_2693 PF07963 Prokaryotic N-terminal methylation motif BD65_2694 PF07963 Prokaryotic N-terminal methylation motif BD65_2694 PF02501 Type II secretion system (T2SS), protein I BD65_2695 PF12019 Type II transport protein GspH BD65_2695 PF07963 Prokaryotic N-terminal methylation motif BD65_2696 PF07963 Prokaryotic N-terminal methylation motif BD65_2696 PF08334 Type II secretion system (T2SS), protein G BD65_2697 PF00482 Type II secretion system (T2SS), protein F BD65_2699 PF03958 Bacterial type II/III secretion system short domain BD65_2699 PF00263 Bacterial type II and III secretion system protein BD65_2700 PF11356 Type II secretion system protein C BD65_2706 PF05683 Fumarase C-terminus BD65_2706 PF05681 Fumarate hydratase (Fumerase) BD65_2707 PF07690 Major Facilitator Superfamily BD65_2708 PF02464 Competence-damaged protein BD65_2709 PF00154 recA bacterial DNA recombination protein BD65_2710 PF02631 RecX family BD65_2711 PF02272 DHHA1 domain BD65_2711 PF01411 tRNA synthetases class II (A) BD65_2711 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BD65_2712 PF02599 Global regulator protein family BD65_2717 PF13419 Haloacid dehalogenase-like hydrolase BD65_2718 PF09335 SNARE associated Golgi protein BD65_2719 PF04262 Glutamate-cysteine ligase BD65_2720 PF02664 S-Ribosylhomocysteinase (LuxS) BD65_2721 PF01595 Cyclin M transmembrane N-terminal domain BD65_2721 PF00571 CBS domain BD65_2721 PF03471 Transporter associated domain BD65_2722 PF01578 Cytochrome C assembly protein BD65_2723 PF02881 SRP54-type protein, helical bundle domain BD65_2723 PF00448 SRP54-type protein, GTPase domain BD65_2723 PF02978 Signal peptide binding domain BD65_2724 PF00886 Ribosomal protein S16 BD65_2725 PF05239 PRC-barrel domain BD65_2725 PF01782 RimM N-terminal domain BD65_2726 PF01746 tRNA (Guanine-1)-methyltransferase BD65_2727 PF01245 Ribosomal protein L19 BD65_2728 PF04338 Protein of unknown function, DUF481 BD65_2729 PF03605 Anaerobic c4-dicarboxylate membrane transporter BD65_273 PF03544 Gram-negative bacterial TonB protein C-terminal BD65_2730 PF04397 LytTr DNA-binding domain BD65_2730 PF00072 Response regulator receiver domain BD65_2731 PF00793 DAHP synthetase I family BD65_2732 PF02153 Prephenate dehydrogenase BD65_2732 PF01817 Chorismate mutase type II BD65_2733 PF00800 Prephenate dehydratase BD65_2733 PF01817 Chorismate mutase type II BD65_2734 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BD65_2735 PF13525 Outer membrane lipoprotein BD65_2736 PF00849 RNA pseudouridylate synthase BD65_2736 PF01479 S4 domain BD65_2738 PF00004 ATPase family associated with various cellular activities (AAA) BD65_2738 PF07724 AAA domain (Cdc48 subfamily) BD65_2738 PF17871 AAA lid domain BD65_2738 PF10431 C-terminal, D2-small domain, of ClpB protein BD65_2738 PF02861 Clp amino terminal domain, pathogenicity island component BD65_274 PF03061 Thioesterase superfamily BD65_2746 PF01527 Transposase BD65_2747 PF03372 Endonuclease/Exonuclease/phosphatase family BD65_2748 PF01476 LysM domain BD65_2748 PF01464 Transglycosylase SLT domain BD65_2749 PF00753 Metallo-beta-lactamase superfamily BD65_2749 PF16123 Hydroxyacylglutathione hydrolase C-terminus BD65_275 PF04279 Intracellular septation protein A BD65_2750 PF08241 Methyltransferase domain BD65_2751 PF00075 RNase H BD65_2752 PF00929 Exonuclease BD65_2754 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BD65_2754 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BD65_2754 PF09317 Domain of unknown function (DUF1974) BD65_2755 PF13580 SIS domain BD65_2756 PF03734 L,D-transpeptidase catalytic domain BD65_2757 PF13230 Glutamine amidotransferases class-II BD65_2758 PF11973 NQRA C-terminal domain BD65_2758 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) BD65_2759 PF03116 NQR2, RnfD, RnfE family BD65_276 PF01740 STAS domain BD65_276 PF00916 Sulfate permease family BD65_2760 PF04205 FMN-binding domain BD65_2761 PF02508 Rnf-Nqr subunit, membrane protein BD65_2762 PF02508 Rnf-Nqr subunit, membrane protein BD65_2763 PF00175 Oxidoreductase NAD-binding domain BD65_2763 PF00970 Oxidoreductase FAD-binding domain BD65_2763 PF00111 2Fe-2S iron-sulfur cluster binding domain BD65_2764 PF02424 ApbE family BD65_2765 PF04400 (Na+)-NQR maturation NqrM BD65_2766 PF03009 Glycerophosphoryl diester phosphodiesterase family BD65_2767 PF11798 IMS family HHH motif BD65_2767 PF00817 impB/mucB/samB family BD65_2767 PF11799 impB/mucB/samB family C-terminal domain BD65_2768 PF01546 Peptidase family M20/M25/M40 BD65_2768 PF07687 Peptidase dimerisation domain BD65_2769 PF00156 Phosphoribosyl transferase domain BD65_2771 PF07417 Sigma factor-binding transcriptional regulator Crl BD65_2772 PF00696 Amino acid kinase family BD65_2772 PF01472 PUA domain BD65_2773 PF00171 Aldehyde dehydrogenase family BD65_2774 PF07317 Flagellar regulator YcgR BD65_2774 PF07238 PilZ domain BD65_2778 PF01497 Periplasmic binding protein BD65_2779 PF07715 TonB-dependent Receptor Plug Domain BD65_2779 PF00593 TonB dependent receptor BD65_278 PF03692 Putative zinc- or iron-chelating domain BD65_2780 PF01202 Shikimate kinase BD65_2784 PF07302 AroM protein BD65_2785 PF06865 Pyrimidine/purine nucleoside phosphorylase BD65_2786 PF04381 Putative exonuclease, RdgC BD65_2787 PF00480 ROK family BD65_2788 PF13476 AAA domain BD65_2789 PF00149 Calcineurin-like phosphoesterase BD65_2789 PF12320 Type 5 capsule protein repressor C-terminal domain BD65_279 PF03922 OmpW family BD65_2790 PF00072 Response regulator receiver domain BD65_2790 PF00486 Transcriptional regulatory protein, C terminal BD65_2791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_2791 PF00512 His Kinase A (phospho-acceptor) domain BD65_2791 PF00989 PAS fold BD65_2791 PF11808 Phosphate regulon sensor protein PhoR BD65_2792 PF12849 PBP superfamily domain BD65_2793 PF05525 Branched-chain amino acid transport protein BD65_2794 PF00324 Amino acid permease BD65_2795 PF00128 Alpha amylase, catalytic domain BD65_2795 PF02903 Alpha amylase, N-terminal ig-like domain BD65_2797 PF00578 AhpC/TSA family BD65_2797 PF10417 C-terminal domain of 1-Cys peroxiredoxin BD65_2798 PF04336 Acyl carrier protein phosphodiesterase BD65_2799 PF02547 Queuosine biosynthesis protein BD65_2800 PF01702 Queuine tRNA-ribosyltransferase BD65_2801 PF02699 Preprotein translocase subunit BD65_2802 PF07549 SecD/SecF GG Motif BD65_2802 PF02355 Protein export membrane protein BD65_2802 PF13721 SecD export protein N-terminal TM region BD65_2803 PF02355 Protein export membrane protein BD65_2803 PF07549 SecD/SecF GG Motif BD65_2804 PF03477 ATP cone domain BD65_2805 PF01872 RibD C-terminal domain BD65_2805 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BD65_2806 PF00885 6,7-dimethyl-8-ribityllumazine synthase BD65_2807 PF01029 NusB family BD65_2808 PF02769 AIR synthase related protein, C-terminal domain BD65_2808 PF00586 AIR synthase related protein, N-terminal domain BD65_2809 PF04608 Phosphatidylglycerophosphatase A BD65_281 PF00290 Tryptophan synthase alpha chain BD65_2810 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BD65_2810 PF02779 Transketolase, pyrimidine binding domain BD65_2810 PF02780 Transketolase, C-terminal domain BD65_2811 PF00348 Polyprenyl synthetase BD65_2812 PF02609 Exonuclease VII small subunit BD65_2813 PF02568 Thiamine biosynthesis protein (ThiI) BD65_2813 PF02926 THUMP domain BD65_2814 PF02954 Bacterial regulatory protein, Fis family BD65_2814 PF14532 Sigma-54 interaction domain BD65_2814 PF00072 Response regulator receiver domain BD65_2815 PF00512 His Kinase A (phospho-acceptor) domain BD65_2815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_2815 PF00672 HAMP domain BD65_2817 PF07690 Major Facilitator Superfamily BD65_2818 PF01965 DJ-1/PfpI family BD65_2819 PF02558 Ketopantoate reductase PanE/ApbA BD65_2819 PF08546 Ketopantoate reductase PanE/ApbA C terminal BD65_282 PF00291 Pyridoxal-phosphate dependent enzyme BD65_2820 PF04461 Protein of unknown function (DUF520) BD65_2821 PF07690 Major Facilitator Superfamily BD65_2822 PF01040 UbiA prenyltransferase family BD65_2823 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BD65_2824 PF00510 Cytochrome c oxidase subunit III BD65_2825 PF00115 Cytochrome C and Quinol oxidase polypeptide I BD65_2826 PF06481 COX Aromatic Rich Motif BD65_2826 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BD65_2827 PF03502 Nucleoside-specific channel-forming protein, Tsx BD65_2828 PF07690 Major Facilitator Superfamily BD65_2829 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BD65_2829 PF03923 Uncharacterized lipoprotein BD65_283 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BD65_283 PF00218 Indole-3-glycerol phosphate synthase BD65_2830 PF01722 BolA-like protein BD65_2831 PF05698 Bacterial trigger factor protein (TF) C-terminus BD65_2831 PF05697 Bacterial trigger factor protein (TF) BD65_2831 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BD65_2832 PF00574 Clp protease BD65_2833 PF06689 ClpX C4-type zinc finger BD65_2833 PF10431 C-terminal, D2-small domain, of ClpB protein BD65_2833 PF07724 AAA domain (Cdc48 subfamily) BD65_2834 PF00004 ATPase family associated with various cellular activities (AAA) BD65_2834 PF02190 ATP-dependent protease La (LON) substrate-binding domain BD65_2834 PF05362 Lon protease (S16) C-terminal proteolytic domain BD65_2835 PF00216 Bacterial DNA-binding protein BD65_2836 PF13145 PPIC-type PPIASE domain BD65_2839 PF06508 Queuosine biosynthesis protein QueC BD65_284 PF00591 Glycosyl transferase family, a/b domain BD65_284 PF02885 Glycosyl transferase family, helical bundle domain BD65_2840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BD65_2840 PF12793 Sugar transport-related sRNA regulator N-term BD65_2843 PF13404 AsnC-type helix-turn-helix domain BD65_2843 PF01037 Lrp/AsnC ligand binding domain BD65_2844 PF00664 ABC transporter transmembrane region BD65_2844 PF00005 ABC transporter BD65_2845 PF00005 ABC transporter BD65_2845 PF00664 ABC transporter transmembrane region BD65_2846 PF00543 Nitrogen regulatory protein P-II BD65_2847 PF00909 Ammonium Transporter Family BD65_2849 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BD65_285 PF00117 Glutamine amidotransferase class-I BD65_2850 PF05321 Haemolysin expression modulating protein BD65_2851 PF10757 Biofilm formation regulator YbaJ BD65_2852 PF01197 Ribosomal protein L31 BD65_2853 PF00873 AcrB/AcrD/AcrF family BD65_2854 PF00529 HlyD membrane-fusion protein of T1SS BD65_2854 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BD65_2855 PF00440 Bacterial regulatory proteins, tetR family BD65_2855 PF08361 MAATS-type transcriptional repressor, C-terminal region BD65_2856 PF02635 DsrE/DsrF-like family BD65_2857 PF12795 Mechanosensitive ion channel porin domain BD65_2857 PF12794 Mechanosensitive ion channel inner membrane domain 1 BD65_2857 PF00924 Mechanosensitive ion channel BD65_2858 PF10689 Protein of unknown function (DUF2496) BD65_286 PF00425 chorismate binding enzyme BD65_286 PF04715 Anthranilate synthase component I, N terminal region BD65_2860 PF04304 Protein of unknown function (DUF454) BD65_2861 PF00156 Phosphoribosyl transferase domain BD65_2862 PF01970 Tripartite tricarboxylate transporter TctA family BD65_2865 PF00486 Transcriptional regulatory protein, C terminal BD65_2865 PF00072 Response regulator receiver domain BD65_2866 PF00512 His Kinase A (phospho-acceptor) domain BD65_2866 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_2866 PF08521 Two-component sensor kinase N-terminal BD65_2867 PF12169 DNA polymerase III subunits gamma and tau domain III BD65_2867 PF12170 DNA polymerase III tau subunit V interacting with alpha BD65_2867 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BD65_2868 PF02575 YbaB/EbfC DNA-binding family BD65_2869 PF13662 Toprim domain BD65_2869 PF02132 RecR protein BD65_287 PF02811 PHP domain BD65_2871 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_2871 PF00183 Hsp90 protein BD65_2872 PF05191 Adenylate kinase, active site lid BD65_2873 PF00762 Ferrochelatase BD65_2874 PF02706 Chain length determinant protein BD65_2875 PF00294 pfkB family carbohydrate kinase BD65_2876 PF00999 Sodium/hydrogen exchanger family BD65_2876 PF02254 TrkA-N domain BD65_2878 PF00149 Calcineurin-like phosphoesterase BD65_2878 PF02872 5'-nucleotidase, C-terminal domain BD65_2879 PF01527 Transposase BD65_288 PF01300 Telomere recombination BD65_2881 PF08242 Methyltransferase domain BD65_2885 PF02350 UDP-N-acetylglucosamine 2-epimerase BD65_2887 PF08485 Polysaccharide biosynthesis protein C-terminal BD65_2887 PF02719 Polysaccharide biosynthesis protein BD65_289 PF00849 RNA pseudouridylate synthase BD65_289 PF01479 S4 domain BD65_2891 PF04073 Aminoacyl-tRNA editing domain BD65_2892 PF01963 TraB family BD65_2893 PF00403 Heavy-metal-associated domain BD65_2894 PF13411 MerR HTH family regulatory protein BD65_2895 PF01957 NfeD-like C-terminal, partner-binding BD65_2896 PF16200 C-terminal region of band_7 BD65_2896 PF01145 SPFH domain / Band 7 family BD65_2897 PF00085 Thioredoxin BD65_2898 PF00106 short chain dehydrogenase BD65_2899 PF13472 GDSL-like Lipase/Acylhydrolase family BD65_29 PF00484 Carbonic anhydrase BD65_290 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BD65_2900 PF00005 ABC transporter BD65_2902 PF02222 ATP-grasp domain BD65_2902 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BD65_2903 PF00731 AIR carboxylase BD65_2904 PF00149 Calcineurin-like phosphoesterase BD65_2905 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BD65_2906 PF01406 tRNA synthetases class I (C) catalytic domain BD65_2906 PF09190 DALR domain BD65_2909 PF00419 Fimbrial protein BD65_291 PF00106 short chain dehydrogenase BD65_2911 PF00577 Outer membrane usher protein BD65_2911 PF13954 PapC N-terminal domain BD65_2911 PF13953 PapC C-terminal domain BD65_2912 PF02753 Pili assembly chaperone PapD, C-terminal domain BD65_2912 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BD65_2919 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BD65_2919 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BD65_292 PF01343 Peptidase family S49 BD65_292 PF08496 Peptidase family S49 N-terminal BD65_2921 PF13356 Arm DNA-binding domain BD65_2921 PF00589 Phage integrase family BD65_2922 PF01527 Transposase BD65_2923 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BD65_2927 PF01527 Transposase BD65_293 PF10692 Protein of unknown function (DUF2498) BD65_2930 PF13193 AMP-binding enzyme C-terminal domain BD65_2930 PF00501 AMP-binding enzyme BD65_2935 PF01292 Prokaryotic cytochrome b561 BD65_2937 PF00343 Carbohydrate phosphorylase BD65_2939 PF00072 Response regulator receiver domain BD65_294 PF08272 Topoisomerase I zinc-ribbon-like BD65_294 PF01131 DNA topoisomerase BD65_294 PF01751 Toprim domain BD65_294 PF01396 Topoisomerase DNA binding C4 zinc finger BD65_2941 PF00483 Nucleotidyl transferase BD65_2943 PF00535 Glycosyl transferase family 2 BD65_2943 PF03552 Cellulose synthase BD65_2943 PF07238 PilZ domain BD65_2948 PF00512 His Kinase A (phospho-acceptor) domain BD65_2948 PF00672 HAMP domain BD65_2948 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BD65_2948 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_2948 PF00072 Response regulator receiver domain BD65_2948 PF01627 Hpt domain BD65_2949 PF00072 Response regulator receiver domain BD65_2949 PF00990 Diguanylate cyclase, GGDEF domain BD65_295 PF03466 LysR substrate binding domain BD65_295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_2952 PF00196 Bacterial regulatory proteins, luxR family BD65_2953 PF00313 'Cold-shock' DNA-binding domain BD65_2954 PF00313 'Cold-shock' DNA-binding domain BD65_2955 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BD65_2958 PF00990 Diguanylate cyclase, GGDEF domain BD65_2958 PF05230 MASE2 domain BD65_2959 PF02416 mttA/Hcf106 family BD65_2960 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BD65_2960 PF04055 Radical SAM superfamily BD65_2961 PF03099 Biotin/lipoate A/B protein ligase family BD65_2962 PF04359 Protein of unknown function (DUF493) BD65_2963 PF07943 Penicillin-binding protein 5, C-terminal domain BD65_2963 PF00768 D-alanyl-D-alanine carboxypeptidase BD65_2964 PF03330 Lytic transglycolase BD65_2964 PF05036 Sporulation related domain BD65_2965 PF01098 Cell cycle protein BD65_2966 PF03717 Penicillin-binding Protein dimerisation domain BD65_2966 PF00905 Penicillin binding protein transpeptidase domain BD65_2967 PF02590 Predicted SPOUT methyltransferase BD65_2969 PF01467 Cytidylyltransferase-like BD65_2970 PF14840 Processivity clamp loader gamma complex DNA pol III C-term BD65_2970 PF06144 DNA polymerase III, delta subunit BD65_2971 PF04390 Lipopolysaccharide-assembly BD65_2972 PF00133 tRNA synthetases class I (I, L, M and V) BD65_2972 PF08264 Anticodon-binding domain of tRNA BD65_2972 PF13603 Leucyl-tRNA synthetase, Domain 2 BD65_2973 PF07295 Zinc-ribbon containing domain BD65_2974 PF00005 ABC transporter BD65_2975 PF00528 Binding-protein-dependent transport system inner membrane component BD65_2976 PF00528 Binding-protein-dependent transport system inner membrane component BD65_2977 PF00497 Bacterial extracellular solute-binding proteins, family 3 BD65_2979 PF00795 Carbon-nitrogen hydrolase BD65_298 PF00330 Aconitase family (aconitate hydratase) BD65_298 PF00694 Aconitase C-terminal domain BD65_2980 PF03471 Transporter associated domain BD65_2980 PF00571 CBS domain BD65_2981 PF02130 Uncharacterized protein family UPF0054 BD65_2982 PF02562 PhoH-like protein BD65_2983 PF04055 Radical SAM superfamily BD65_2983 PF00919 Uncharacterized protein family UPF0004 BD65_2983 PF01938 TRAM domain BD65_2984 PF01494 FAD binding domain BD65_299 PF00925 GTP cyclohydrolase II BD65_2992 PF00733 Asparagine synthase BD65_2992 PF13537 Glutamine amidotransferase domain BD65_2993 PF13344 Haloacid dehalogenase-like hydrolase BD65_2994 PF00480 ROK family BD65_2994 PF01047 MarR family BD65_2995 PF01979 Amidohydrolase family BD65_2996 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BD65_2997 PF02378 Phosphotransferase system, EIIC BD65_2997 PF00367 phosphotransferase system, EIIB BD65_2997 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BD65_2998 PF00749 tRNA synthetases class I (E and Q), catalytic domain BD65_2998 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BD65_2999 PF03573 outer membrane porin, OprD family BD65_3 PF07126 Cell-division protein ZapC BD65_30 PF02080 TrkA-C domain BD65_30 PF03471 Transporter associated domain BD65_30 PF00999 Sodium/hydrogen exchanger family BD65_300 PF01569 PAP2 superfamily BD65_3001 PF02838 Glycosyl hydrolase family 20, domain 2 BD65_3001 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain BD65_3001 PF03173 Putative carbohydrate binding domain BD65_3001 PF00728 Glycosyl hydrolase family 20, catalytic domain BD65_3002 PF01475 Ferric uptake regulator family BD65_3003 PF00258 Flavodoxin BD65_3004 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD65_3004 PF00672 HAMP domain BD65_3004 PF02203 Tar ligand binding domain homologue BD65_3005 PF01402 Ribbon-helix-helix protein, copG family BD65_3006 PF12697 Alpha/beta hydrolase family BD65_3007 PF03925 SeqA protein C-terminal domain BD65_3007 PF17206 SeqA protein N-terminal domain BD65_3008 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BD65_3008 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BD65_3008 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BD65_3008 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BD65_301 PF06305 Lipopolysaccharide assembly protein A domain BD65_3010 PF00072 Response regulator receiver domain BD65_3010 PF00486 Transcriptional regulatory protein, C terminal BD65_3011 PF13493 Domain of unknown function (DUF4118) BD65_3011 PF02702 Osmosensitive K+ channel His kinase sensor domain BD65_3011 PF13492 GAF domain BD65_3011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_3011 PF00512 His Kinase A (phospho-acceptor) domain BD65_3012 PF02669 K+-transporting ATPase, c chain BD65_3014 PF03814 Potassium-transporting ATPase A subunit BD65_3015 PF10725 Protein of unknown function (DUF2517) BD65_3016 PF08349 Protein of unknown function (DUF1722) BD65_3017 PF03441 FAD binding domain of DNA photolyase BD65_3017 PF00875 DNA photolyase BD65_3018 PF02112 cAMP phosphodiesterases class-II BD65_3019 PF01784 NIF3 (NGG1p interacting factor 3) BD65_302 PF18073 Rubredoxin metal binding domain BD65_3020 PF02682 Carboxyltransferase domain, subdomain C and D BD65_3021 PF02626 Carboxyltransferase domain, subdomain A and B BD65_3022 PF03746 LamB/YcsF family BD65_3025 PF01470 Pyroglutamyl peptidase BD65_3026 PF00285 Citrate synthase, C-terminal domain BD65_3027 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BD65_3028 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BD65_3029 PF00890 FAD binding domain BD65_3029 PF02910 Fumarate reductase flavoprotein C-term BD65_3030 PF13085 2Fe-2S iron-sulfur cluster binding domain BD65_3031 PF16078 2-oxoglutarate dehydrogenase N-terminus BD65_3031 PF16870 2-oxoglutarate dehydrogenase C-terminal BD65_3031 PF00676 Dehydrogenase E1 component BD65_3031 PF02779 Transketolase, pyrimidine binding domain BD65_3032 PF00364 Biotin-requiring enzyme BD65_3032 PF02817 e3 binding domain BD65_3032 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BD65_3033 PF00549 CoA-ligase BD65_3033 PF08442 ATP-grasp domain BD65_3034 PF00549 CoA-ligase BD65_3034 PF02629 CoA binding domain BD65_3035 PF02872 5'-nucleotidase, C-terminal domain BD65_3035 PF00149 Calcineurin-like phosphoesterase BD65_3036 PF01654 Cytochrome bd terminal oxidase subunit I BD65_3037 PF02322 Cytochrome bd terminal oxidase subunit II BD65_3038 PF08173 Membrane bound YbgT-like protein BD65_3039 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) BD65_304 PF07338 Protein of unknown function (DUF1471) BD65_3040 PF03061 Thioesterase superfamily BD65_3041 PF01618 MotA/TolQ/ExbB proton channel family BD65_3042 PF02472 Biopolymer transport protein ExbD/TolR BD65_3043 PF06519 TolA C-terminal BD65_3043 PF06519 TolA C-terminal BD65_3044 PF04052 TolB amino-terminal domain BD65_3044 PF07676 WD40-like Beta Propeller Repeat BD65_3045 PF00691 OmpA family BD65_3046 PF13174 Tetratricopeptide repeat BD65_3046 PF16331 TolA binding protein trimerisation BD65_3049 PF02445 Quinolinate synthetase A protein BD65_305 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BD65_3050 PF00989 PAS fold BD65_3050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_3050 PF01627 Hpt domain BD65_3050 PF00497 Bacterial extracellular solute-binding proteins, family 3 BD65_3050 PF00072 Response regulator receiver domain BD65_3050 PF00512 His Kinase A (phospho-acceptor) domain BD65_3051 PF04973 Nicotinamide mononucleotide transporter BD65_3052 PF00196 Bacterial regulatory proteins, luxR family BD65_3052 PF00072 Response regulator receiver domain BD65_3053 PF00793 DAHP synthetase I family BD65_3054 PF00300 Histidine phosphatase superfamily (branch 1) BD65_3057 PF01263 Aldose 1-epimerase BD65_3058 PF00288 GHMP kinases N terminal domain BD65_3058 PF10509 Galactokinase galactose-binding signature BD65_3058 PF08544 GHMP kinases C terminal BD65_3059 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BD65_3059 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BD65_306 PF01253 Translation initiation factor SUI1 BD65_3060 PF16363 GDP-mannose 4,6 dehydratase BD65_3062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_3062 PF03459 TOBE domain BD65_3063 PF10766 Multidrug efflux pump-associated protein AcrZ BD65_3065 PF00528 Binding-protein-dependent transport system inner membrane component BD65_3066 PF03459 TOBE domain BD65_3066 PF00005 ABC transporter BD65_3068 PF10282 Lactonase, 7-bladed beta-propeller BD65_3069 PF00202 Aminotransferase class-III BD65_307 PF05433 Glycine zipper 2TM domain BD65_3070 PF06968 Biotin and Thiamin Synthesis associated domain BD65_3070 PF04055 Radical SAM superfamily BD65_3071 PF00155 Aminotransferase class I and II BD65_3072 PF08241 Methyltransferase domain BD65_3074 PF00005 ABC transporter BD65_3075 PF02151 UvrB/uvrC motif BD65_3075 PF17757 UvrB interaction domain BD65_3075 PF12344 Ultra-violet resistance protein B BD65_3075 PF04851 Type III restriction enzyme, res subunit BD65_3075 PF00271 Helicase conserved C-terminal domain BD65_3076 PF09905 DNA-binding protein VF530 BD65_308 PF00923 Transaldolase/Fructose-6-phosphate aldolase BD65_3081 PF01933 Uncharacterised protein family UPF0052 BD65_3083 PF06463 Molybdenum Cofactor Synthesis C BD65_3083 PF04055 Radical SAM superfamily BD65_3084 PF01967 MoaC family BD65_3085 PF02597 ThiS family BD65_3086 PF02391 MoaE protein BD65_3087 PF01027 Inhibitor of apoptosis-promoting Bax1 BD65_309 PF05231 MASE1 BD65_309 PF00563 EAL domain BD65_309 PF08447 PAS fold BD65_309 PF08448 PAS fold BD65_309 PF13426 PAS domain BD65_309 PF00990 Diguanylate cyclase, GGDEF domain BD65_3090 PF00005 ABC transporter BD65_3091 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BD65_3092 PF09209 Tetracyclin repressor-like, C-terminal domain BD65_3092 PF00440 Bacterial regulatory proteins, tetR family BD65_3093 PF00271 Helicase conserved C-terminal domain BD65_3093 PF00270 DEAD/DEAH box helicase BD65_3094 PF01207 Dihydrouridine synthase (Dus) BD65_3096 PF00768 D-alanyl-D-alanine carboxypeptidase BD65_3097 PF09330 D-lactate dehydrogenase, membrane binding BD65_3097 PF01565 FAD binding domain BD65_3098 PF01928 CYTH domain BD65_3099 PF01844 HNH endonuclease BD65_310 PF00575 S1 RNA binding domain BD65_310 PF08206 Ribonuclease B OB domain BD65_310 PF00773 RNB domain BD65_3101 PF04226 Transglycosylase associated protein BD65_3102 PF00005 ABC transporter BD65_3104 PF00528 Binding-protein-dependent transport system inner membrane component BD65_3105 PF00528 Binding-protein-dependent transport system inner membrane component BD65_3106 PF07308 Protein of unknown function (DUF1456) BD65_3107 PF00581 Rhodanese-like domain BD65_3108 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BD65_3109 PF00528 Binding-protein-dependent transport system inner membrane component BD65_311 PF00730 HhH-GPD superfamily base excision DNA repair protein BD65_311 PF10576 Iron-sulfur binding domain of endonuclease III BD65_311 PF00633 Helix-hairpin-helix motif BD65_3110 PF00005 ABC transporter BD65_3111 PF00528 Binding-protein-dependent transport system inner membrane component BD65_3112 PF13520 Amino acid permease BD65_3113 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BD65_3113 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BD65_3113 PF01276 Orn/Lys/Arg decarboxylase, major domain BD65_3114 PF01385 Probable transposase BD65_3114 PF07282 Putative transposase DNA-binding domain BD65_3114 PF12323 Helix-turn-helix domain BD65_3116 PF00892 EamA-like transporter family BD65_3117 PF00267 Gram-negative porin BD65_3118 PF06733 DEAD_2 BD65_3118 PF13307 Helicase C-terminal domain BD65_3119 PF02885 Glycosyl transferase family, helical bundle domain BD65_312 PF02508 Rnf-Nqr subunit, membrane protein BD65_3120 PF05971 RNA methyltransferase BD65_3121 PF00005 ABC transporter BD65_3122 PF00528 Binding-protein-dependent transport system inner membrane component BD65_3123 PF00497 Bacterial extracellular solute-binding proteins, family 3 BD65_3124 PF00210 Ferritin-like domain BD65_3125 PF13649 Methyltransferase domain BD65_3126 PF00892 EamA-like transporter family BD65_3127 PF13505 Outer membrane protein beta-barrel domain BD65_3128 PF01769 Divalent cation transporter BD65_3128 PF03448 MgtE intracellular N domain BD65_3128 PF00571 CBS domain BD65_313 PF04205 FMN-binding domain BD65_3130 PF16916 Dimerisation domain of Zinc Transporter BD65_3130 PF01545 Cation efflux family BD65_3131 PF12848 ABC transporter BD65_3131 PF00005 ABC transporter BD65_3132 PF00899 ThiF family BD65_3133 PF00994 Probable molybdopterin binding domain BD65_3133 PF03454 MoeA C-terminal region (domain IV) BD65_3133 PF03453 MoeA N-terminal region (domain I and II) BD65_3135 PF00756 Putative esterase BD65_3136 PF08240 Alcohol dehydrogenase GroES-like domain BD65_3136 PF00107 Zinc-binding dehydrogenase BD65_3137 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_3137 PF03466 LysR substrate binding domain BD65_3138 PF06779 Uncharacterised MFS-type transporter YbfB BD65_3139 PF01227 GTP cyclohydrolase I BD65_314 PF03116 NQR2, RnfD, RnfE family BD65_3140 PF04235 Protein of unknown function (DUF418) BD65_3141 PF00356 Bacterial regulatory proteins, lacI family BD65_3143 PF13407 Periplasmic binding protein domain BD65_3144 PF00005 ABC transporter BD65_3145 PF02653 Branched-chain amino acid transport system / permease component BD65_3146 PF02698 DUF218 domain BD65_3147 PF03949 Malic enzyme, NAD binding domain BD65_3147 PF00390 Malic enzyme, N-terminal domain BD65_3149 PF03466 LysR substrate binding domain BD65_3149 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_315 PF06445 GyrI-like small molecule binding domain BD65_315 PF12833 Helix-turn-helix domain BD65_3150 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BD65_3150 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region BD65_3151 PF04172 LrgB-like family BD65_3152 PF03788 LrgA family BD65_3153 PF01797 Transposase IS200 like BD65_3154 PF01385 Probable transposase BD65_3154 PF07282 Putative transposase DNA-binding domain BD65_3154 PF12323 Helix-turn-helix domain BD65_3157 PF01588 Putative tRNA binding domain BD65_3157 PF09334 tRNA synthetases class I (M) BD65_3158 PF10609 NUBPL iron-transfer P-loop NTPase BD65_3159 PF00485 Phosphoribulokinase / Uridine kinase family BD65_3160 PF00692 dUTPase BD65_3161 PF05170 AsmA family BD65_3163 PF03606 C4-dicarboxylate anaerobic carrier BD65_3164 PF03471 Transporter associated domain BD65_3164 PF00571 CBS domain BD65_3164 PF03741 Integral membrane protein TerC family BD65_3165 PF00483 Nucleotidyl transferase BD65_3166 PF00483 Nucleotidyl transferase BD65_3167 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BD65_3167 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BD65_3168 PF01502 Phosphoribosyl-AMP cyclohydrolase BD65_3168 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BD65_3169 PF00977 Histidine biosynthesis protein BD65_3170 PF00977 Histidine biosynthesis protein BD65_3171 PF00117 Glutamine amidotransferase class-I BD65_3172 PF00475 Imidazoleglycerol-phosphate dehydratase BD65_3173 PF00155 Aminotransferase class I and II BD65_3174 PF00815 Histidinol dehydrogenase BD65_3175 PF01634 ATP phosphoribosyltransferase BD65_3175 PF08029 HisG, C-terminal domain BD65_3176 PF01797 Transposase IS200 like BD65_3179 PF01370 NAD dependent epimerase/dehydratase family BD65_3180 PF13417 Glutathione S-transferase, N-terminal domain BD65_3180 PF00043 Glutathione S-transferase, C-terminal domain BD65_3184 PF01053 Cys/Met metabolism PLP-dependent enzyme BD65_3185 PF00571 CBS domain BD65_3185 PF00291 Pyridoxal-phosphate dependent enzyme BD65_3186 PF07943 Penicillin-binding protein 5, C-terminal domain BD65_3186 PF00768 D-alanyl-D-alanine carboxypeptidase BD65_3187 PF03315 Serine dehydratase beta chain BD65_3187 PF03313 Serine dehydratase alpha chain BD65_3189 PF00455 DeoR C terminal sensor domain BD65_3189 PF08220 DeoR-like helix-turn-helix domain BD65_319 PF13237 4Fe-4S dicluster domain BD65_319 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BD65_319 PF10531 SLBB domain BD65_319 PF13375 RnfC Barrel sandwich hybrid domain BD65_3190 PF01791 DeoC/LacD family aldolase BD65_3191 PF01569 PAP2 superfamily BD65_3193 PF02080 TrkA-C domain BD65_3193 PF06826 Predicted Permease Membrane Region BD65_3194 PF00462 Glutaredoxin BD65_3195 PF07214 Protein of unknown function (DUF1418) BD65_3196 PF10722 Putative bacterial sensory transduction regulator BD65_3197 PF13416 Bacterial extracellular solute-binding protein BD65_3198 PF00005 ABC transporter BD65_3198 PF08402 TOBE domain BD65_3199 PF00528 Binding-protein-dependent transport system inner membrane component BD65_32 PF03050 Transposase IS66 family BD65_32 PF13005 zinc-finger binding domain of transposase IS66 BD65_32 PF13007 Transposase C of IS166 homeodomain BD65_32 PF13817 IS66 C-terminal element BD65_320 PF04060 Putative Fe-S cluster BD65_3200 PF00528 Binding-protein-dependent transport system inner membrane component BD65_3201 PF10767 Protein of unknown function (DUF2593) BD65_3202 PF05958 tRNA (Uracil-5-)-methyltransferase BD65_3203 PF00497 Bacterial extracellular solute-binding proteins, family 3 BD65_3204 PF00528 Binding-protein-dependent transport system inner membrane component BD65_3205 PF00528 Binding-protein-dependent transport system inner membrane component BD65_3206 PF00497 Bacterial extracellular solute-binding proteins, family 3 BD65_3207 PF00005 ABC transporter BD65_3208 PF12883 Protein of unknown function (DUF3828) BD65_3209 PF01906 Putative heavy-metal-binding BD65_321 PF02508 Rnf-Nqr subunit, membrane protein BD65_3210 PF01370 NAD dependent epimerase/dehydratase family BD65_3211 PF13460 NAD(P)H-binding BD65_3211 PF11066 Protein of unknown function (DUF2867) BD65_3212 PF01212 Beta-eliminating lyase BD65_3213 PF00175 Oxidoreductase NAD-binding domain BD65_3213 PF00970 Oxidoreductase FAD-binding domain BD65_3213 PF00111 2Fe-2S iron-sulfur cluster binding domain BD65_3214 PF03063 Prismane/CO dehydrogenase family BD65_3215 PF03956 Lysine exporter LysO BD65_3217 PF04393 Protein of unknown function (DUF535) BD65_3219 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BD65_322 PF10754 Protein of unknown function (DUF2569) BD65_3220 PF00005 ABC transporter BD65_3220 PF12704 MacB-like periplasmic core domain BD65_3220 PF02687 FtsX-like permease family BD65_3221 PF00313 'Cold-shock' DNA-binding domain BD65_3222 PF02617 ATP-dependent Clp protease adaptor protein ClpS BD65_3223 PF07724 AAA domain (Cdc48 subfamily) BD65_3223 PF17871 AAA lid domain BD65_3223 PF02861 Clp amino terminal domain, pathogenicity island component BD65_3223 PF00004 ATPase family associated with various cellular activities (AAA) BD65_3223 PF10431 C-terminal, D2-small domain, of ClpB protein BD65_3224 PF01176 Translation initiation factor 1A / IF-1 BD65_3225 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BD65_3226 PF00664 ABC transporter transmembrane region BD65_3226 PF00005 ABC transporter BD65_3227 PF00005 ABC transporter BD65_3227 PF00664 ABC transporter transmembrane region BD65_3228 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD65_3229 PF01037 Lrp/AsnC ligand binding domain BD65_323 PF01268 Formate--tetrahydrofolate ligase BD65_3230 PF01580 FtsK/SpoIIIE family BD65_3230 PF09397 Ftsk gamma domain BD65_3230 PF17854 FtsK alpha domain BD65_3230 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BD65_3231 PF03548 Outer membrane lipoprotein carrier protein LolA BD65_3232 PF00004 ATPase family associated with various cellular activities (AAA) BD65_3232 PF16193 AAA C-terminal domain BD65_3232 PF12002 MgsA AAA+ ATPase C terminal BD65_3233 PF02403 Seryl-tRNA synthetase N-terminal domain BD65_3233 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BD65_3235 PF07690 Major Facilitator Superfamily BD65_3236 PF04055 Radical SAM superfamily BD65_3237 PF02901 Pyruvate formate lyase-like BD65_3237 PF01228 Glycine radical BD65_3238 PF01226 Formate/nitrite transporter BD65_3239 PF18381 YcaO cyclodehydratase C-terminal domain BD65_3239 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding BD65_324 PF09313 Domain of unknown function (DUF1971) BD65_324 PF03848 Tellurite resistance protein TehB BD65_3240 PF17763 Glutaminase/Asparaginase C-terminal domain BD65_3240 PF00710 Asparaginase, N-terminal BD65_3241 PF00266 Aminotransferase class-V BD65_3242 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BD65_3243 PF02224 Cytidylate kinase BD65_3244 PF00575 S1 RNA binding domain BD65_3245 PF00216 Bacterial DNA-binding protein BD65_3246 PF03772 Competence protein BD65_3246 PF00753 Metallo-beta-lactamase superfamily BD65_3247 PF00005 ABC transporter BD65_3247 PF00664 ABC transporter transmembrane region BD65_3248 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BD65_3249 PF07063 Domain of unknown function (DUF1338) BD65_325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BD65_325 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BD65_3250 PF00313 'Cold-shock' DNA-binding domain BD65_3251 PF00313 'Cold-shock' DNA-binding domain BD65_3252 PF03966 Trm112p-like protein BD65_3253 PF02348 Cytidylyltransferase BD65_3254 PF01636 Phosphotransferase enzyme family BD65_3255 PF02698 DUF218 domain BD65_3257 PF17193 MukF C-terminal domain BD65_3257 PF03882 MukF winged-helix domain BD65_3257 PF17192 MukF middle domain BD65_3258 PF04288 MukE-like family BD65_3259 PF04310 MukB N-terminal BD65_3259 PF16330 MukB hinge domain BD65_326 PF13593 SBF-like CPA transporter family (DUF4137) BD65_3260 PF01471 Putative peptidoglycan binding domain BD65_3260 PF03734 L,D-transpeptidase catalytic domain BD65_3261 PF05951 Bacterial protein of unknown function (DUF882) BD65_3262 PF00753 Metallo-beta-lactamase superfamily BD65_3263 PF00563 EAL domain BD65_3263 PF12792 CSS motif domain associated with EAL BD65_3264 PF00155 Aminotransferase class I and II BD65_3265 PF00267 Gram-negative porin BD65_3266 PF01336 OB-fold nucleic acid binding domain BD65_3266 PF00152 tRNA synthetases class II (D, K and N) BD65_3267 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BD65_3267 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BD65_327 PF00962 Adenosine/AMP deaminase BD65_328 PF06097 Bacterial protein of unknown function (DUF945) BD65_329 PF01238 Phosphomannose isomerase type I BD65_331 PF00206 Lyase BD65_331 PF10415 Fumarase C C-terminus BD65_332 PF05472 DNA replication terminus site-binding protein (Ter protein) BD65_333 PF00480 ROK family BD65_335 PF00654 Voltage gated chloride channel BD65_336 PF06649 Protein of unknown function (DUF1161) BD65_337 PF06932 Protein of unknown function (DUF1283) BD65_338 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BD65_339 PF00106 short chain dehydrogenase BD65_34 PF01797 Transposase IS200 like BD65_340 PF01510 N-acetylmuramoyl-L-alanine amidase BD65_345 PF01048 Phosphorylase superfamily BD65_345 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus BD65_351 PF14864 Alkyl sulfatase C-terminal BD65_351 PF00753 Metallo-beta-lactamase superfamily BD65_351 PF14863 Alkyl sulfatase dimerisation BD65_356 PF13419 Haloacid dehalogenase-like hydrolase BD65_358 PF06445 GyrI-like small molecule binding domain BD65_359 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BD65_359 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BD65_360 PF13545 Crp-like helix-turn-helix domain BD65_360 PF00027 Cyclic nucleotide-binding domain BD65_361 PF00582 Universal stress protein family BD65_363 PF02233 NAD(P) transhydrogenase beta subunit BD65_364 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BD65_364 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BD65_364 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BD65_366 PF07338 Protein of unknown function (DUF1471) BD65_367 PF13520 Amino acid permease BD65_37 PF00854 POT family BD65_370 PF00486 Transcriptional regulatory protein, C terminal BD65_370 PF00072 Response regulator receiver domain BD65_371 PF00512 His Kinase A (phospho-acceptor) domain BD65_371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_371 PF00672 HAMP domain BD65_372 PF00080 Copper/zinc superoxide dismutase (SODC) BD65_373 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BD65_374 PF12833 Helix-turn-helix domain BD65_375 PF01161 Phosphatidylethanolamine-binding protein BD65_376 PF01278 Omptin family BD65_378 PF00089 Trypsin BD65_380 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BD65_380 PF00270 DEAD/DEAH box helicase BD65_380 PF11898 Domain of unknown function (DUF3418) BD65_380 PF00271 Helicase conserved C-terminal domain BD65_380 PF04408 Helicase associated domain (HA2) BD65_381 PF02525 Flavodoxin-like fold BD65_382 PF07027 Protein of unknown function (DUF1318) BD65_383 PF13617 YnbE-like lipoprotein BD65_385 PF11739 Dicarboxylate transport BD65_386 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BD65_386 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BD65_387 PF03724 META domain BD65_388 PF03891 Domain of unknown function (DUF333) BD65_389 PF02308 MgtC family BD65_39 PF03279 Bacterial lipid A biosynthesis acyltransferase BD65_390 PF00893 Small Multidrug Resistance protein BD65_391 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BD65_391 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BD65_391 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BD65_391 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BD65_391 PF10371 Domain of unknown function BD65_392 PF01171 PP-loop family BD65_393 PF01544 CorA-like Mg2+ transporter protein BD65_394 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BD65_395 PF00246 Zinc carboxypeptidase BD65_396 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BD65_396 PF13378 Enolase C-terminal domain-like BD65_397 PF08534 Redoxin BD65_398 PF18024 Helix-turn-helix domain BD65_398 PF00158 Sigma-54 interaction domain BD65_4 PF00111 2Fe-2S iron-sulfur cluster binding domain BD65_4 PF03473 MOSC domain BD65_4 PF03476 MOSC N-terminal beta barrel domain BD65_401 PF05128 Domain of unknown function (DUF697) BD65_402 PF04317 YcjX-like family, DUF463 BD65_403 PF09584 Phage shock protein PspD (Phageshock_PspD) BD65_404 PF04024 PspC domain BD65_405 PF06667 Phage shock protein B BD65_406 PF04012 PspA/IM30 family BD65_407 PF02954 Bacterial regulatory protein, Fis family BD65_407 PF00158 Sigma-54 interaction domain BD65_409 PF02917 Pertussis toxin, subunit 1 BD65_41 PF01594 AI-2E family transporter BD65_410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BD65_411 PF00528 Binding-protein-dependent transport system inner membrane component BD65_412 PF12911 N-terminal TM domain of oligopeptide transport permease C BD65_412 PF00528 Binding-protein-dependent transport system inner membrane component BD65_413 PF00005 ABC transporter BD65_413 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD65_414 PF00005 ABC transporter BD65_416 PF00854 POT family BD65_418 PF01556 DnaJ C terminal domain BD65_418 PF00226 DnaJ domain BD65_42 PF00196 Bacterial regulatory proteins, luxR family BD65_420 PF04893 Yip1 domain BD65_422 PF11656 YjbD family (DUF3811) BD65_423 PF00043 Glutathione S-transferase, C-terminal domain BD65_423 PF02798 Glutathione S-transferase, N-terminal domain BD65_424 PF08543 Phosphomethylpyrimidine kinase BD65_425 PF01479 S4 domain BD65_425 PF00579 tRNA synthetases class I (W and Y) BD65_426 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BD65_426 PF01243 Pyridoxamine 5'-phosphate oxidase BD65_427 PF03702 Anhydro-N-acetylmuramic acid kinase BD65_428 PF05433 Glycine zipper 2TM domain BD65_429 PF01047 MarR family BD65_43 PF01266 FAD dependent oxidoreductase BD65_431 PF00248 Aldo/keto reductase family BD65_432 PF06945 Protein of unknown function (DUF1289) BD65_433 PF08019 Phosphoethanolamine transferase EptA/EptB BD65_433 PF00884 Sulfatase BD65_434 PF00440 Bacterial regulatory proteins, tetR family BD65_434 PF16925 Tetracyclin repressor-like, C-terminal domain BD65_435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BD65_436 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BD65_437 PF00929 Exonuclease BD65_438 PF00462 Glutaredoxin BD65_439 PF00877 NlpC/P60 family BD65_44 PF13991 BssS protein family BD65_440 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BD65_440 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BD65_442 PF00356 Bacterial regulatory proteins, lacI family BD65_443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_443 PF03466 LysR substrate binding domain BD65_444 PF07690 Major Facilitator Superfamily BD65_446 PF00677 Lumazine binding domain BD65_447 PF01554 MatE BD65_45 PF06183 DinI-like family BD65_451 PF00224 Pyruvate kinase, barrel domain BD65_451 PF02887 Pyruvate kinase, alpha/beta domain BD65_452 PF04728 Lipoprotein leucine-zipper BD65_453 PF01476 LysM domain BD65_453 PF03734 L,D-transpeptidase catalytic domain BD65_453 PF17969 L,D-transpeptidase C-terminal domain BD65_454 PF02657 Fe-S metabolism associated domain BD65_455 PF00266 Aminotransferase class-V BD65_456 PF01458 Uncharacterized protein family (UPF0051) BD65_457 PF00005 ABC transporter BD65_458 PF01458 Uncharacterized protein family (UPF0051) BD65_459 PF01521 Iron-sulphur cluster biosynthesis BD65_46 PF01979 Amidohydrolase family BD65_461 PF03061 Thioesterase superfamily BD65_462 PF02913 FAD linked oxidases, C-terminal domain BD65_462 PF13183 4Fe-4S dicluster domain BD65_462 PF01565 FAD binding domain BD65_463 PF01594 AI-2E family transporter BD65_464 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BD65_464 PF00391 PEP-utilising enzyme, mobile domain BD65_464 PF02896 PEP-utilising enzyme, TIM barrel domain BD65_465 PF03618 Kinase/pyrophosphorylase BD65_466 PF00793 DAHP synthetase I family BD65_467 PF07715 TonB-dependent Receptor Plug Domain BD65_467 PF00593 TonB dependent receptor BD65_468 PF05171 Haemin-degrading HemS.ChuX domain BD65_469 PF01497 Periplasmic binding protein BD65_47 PF03992 Antibiotic biosynthesis monooxygenase BD65_470 PF01032 FecCD transport family BD65_471 PF00005 ABC transporter BD65_472 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BD65_473 PF10437 Bacterial lipoate protein ligase C-terminus BD65_473 PF03099 Biotin/lipoate A/B protein ligase family BD65_474 PF00877 NlpC/P60 family BD65_476 PF00892 EamA-like transporter family BD65_477 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase BD65_478 PF01522 Polysaccharide deacetylase BD65_479 PF01370 NAD dependent epimerase/dehydratase family BD65_479 PF02911 Formyl transferase, C-terminal domain BD65_479 PF00551 Formyl transferase BD65_480 PF00535 Glycosyl transferase family 2 BD65_481 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BD65_482 PF00005 ABC transporter BD65_483 PF01032 FecCD transport family BD65_484 PF02899 Phage integrase, N-terminal SAM-like domain BD65_484 PF00589 Phage integrase family BD65_487 PF02661 Fic/DOC family BD65_488 PF02661 Fic/DOC family BD65_488 PF18543 Intracellular delivery domain BD65_49 PF00575 S1 RNA binding domain BD65_49 PF10150 Ribonuclease E/G family BD65_49 PF12111 Polyribonucleotide phosphorylase C terminal BD65_490 PF00216 Bacterial DNA-binding protein BD65_491 PF01588 Putative tRNA binding domain BD65_491 PF03147 Ferredoxin-fold anticodon binding domain BD65_491 PF03484 tRNA synthetase B5 domain BD65_491 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BD65_491 PF03483 B3/4 domain BD65_492 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BD65_492 PF01409 tRNA synthetases class II core domain (F) BD65_493 PF00453 Ribosomal protein L20 BD65_494 PF01632 Ribosomal protein L35 BD65_495 PF05198 Translation initiation factor IF-3, N-terminal domain BD65_495 PF00707 Translation initiation factor IF-3, C-terminal domain BD65_496 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BD65_496 PF02824 TGS domain BD65_496 PF03129 Anticodon binding domain BD65_496 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BD65_5 PF10672 S-adenosylmethionine-dependent methyltransferase BD65_5 PF02926 THUMP domain BD65_5 PF01170 Putative RNA methylase family UPF0020 BD65_50 PF01479 S4 domain BD65_50 PF00849 RNA pseudouridylate synthase BD65_503 PF01914 MarC family integral membrane protein BD65_504 PF01464 Transglycosylase SLT domain BD65_505 PF01297 Zinc-uptake complex component A periplasmic BD65_506 PF00005 ABC transporter BD65_507 PF00950 ABC 3 transport family BD65_508 PF00950 ABC 3 transport family BD65_51 PF02545 Maf-like protein BD65_510 PF14002 YniB-like protein BD65_512 PF13419 Haloacid dehalogenase-like hydrolase BD65_513 PF04307 LexA-binding, inner membrane-associated putative hydrolase BD65_515 PF01510 N-acetylmuramoyl-L-alanine amidase BD65_516 PF09339 IclR helix-turn-helix domain BD65_516 PF01614 Bacterial transcriptional regulator BD65_517 PF07690 Major Facilitator Superfamily BD65_518 PF01435 Peptidase family M48 BD65_519 PF03572 Peptidase family S41 BD65_519 PF11818 C-terminal domain of tail specific protease (DUF3340) BD65_519 PF17804 Tail specific protease N-terminal domain BD65_519 PF00595 PDZ domain BD65_52 PF02620 Large ribosomal RNA subunit accumulation protein YceD BD65_520 PF17516 ProQ C-terminal domain BD65_520 PF04352 ProQ/FINO family BD65_521 PF13185 GAF domain BD65_522 PF04403 Paraquat-inducible protein A BD65_523 PF02470 MlaD protein BD65_524 PF00360 Phytochrome region BD65_524 PF01590 GAF domain BD65_524 PF00990 Diguanylate cyclase, GGDEF domain BD65_524 PF00563 EAL domain BD65_525 PF07351 Protein of unknown function (DUF1480) BD65_53 PF01783 Ribosomal L32p protein family BD65_530 PF05643 Putative bacterial lipoprotein (DUF799) BD65_532 PF03783 Curli production assembly/transport component CsgG BD65_538 PF00144 Beta-lactamase BD65_54 PF02504 Fatty acid synthesis protein BD65_540 PF10709 Protein of unknown function (DUF2511) BD65_541 PF05425 Copper resistance protein D BD65_542 PF04234 CopC domain BD65_543 PF00210 Ferritin-like domain BD65_544 PF06440 DNA polymerase III, theta subunit BD65_545 PF00561 alpha/beta hydrolase fold BD65_548 PF00929 Exonuclease BD65_549 PF00326 Prolyl oligopeptidase family BD65_549 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BD65_55 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BD65_55 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BD65_551 PF13995 YebF-like protein BD65_553 PF07130 YebG protein BD65_554 PF00270 DEAD/DEAH box helicase BD65_554 PF00271 Helicase conserved C-terminal domain BD65_554 PF03880 DbpA RNA binding domain BD65_555 PF02222 ATP-grasp domain BD65_556 PF03701 Uncharacterised protein family (UPF0181) BD65_557 PF00425 chorismate binding enzyme BD65_557 PF04715 Anthranilate synthase component I, N terminal region BD65_558 PF00293 NUDIX domain BD65_559 PF03313 Serine dehydratase alpha chain BD65_559 PF03315 Serine dehydratase beta chain BD65_56 PF00698 Acyl transferase domain BD65_561 PF03471 Transporter associated domain BD65_561 PF03741 Integral membrane protein TerC family BD65_562 PF03830 PTS system sorbose subfamily IIB component BD65_562 PF03610 PTS system fructose IIA component BD65_563 PF03609 PTS system sorbose-specific iic component BD65_564 PF03613 PTS system mannose/fructose/sorbose family IID component BD65_565 PF06173 Protein of unknown function (DUF986) BD65_566 PF02659 Putative manganese efflux pump BD65_567 PF02441 Flavoprotein BD65_570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BD65_570 PF02770 Acyl-CoA dehydrogenase, middle domain BD65_570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BD65_572 PF05199 GMC oxidoreductase BD65_572 PF00732 GMC oxidoreductase BD65_573 PF00550 Phosphopantetheine attachment site BD65_573 PF00501 AMP-binding enzyme BD65_573 PF00668 Condensation domain BD65_573 PF13193 AMP-binding enzyme C-terminal domain BD65_574 PF07690 Major Facilitator Superfamily BD65_578 PF13847 Methyltransferase domain BD65_579 PF00905 Penicillin binding protein transpeptidase domain BD65_579 PF03717 Penicillin-binding Protein dimerisation domain BD65_58 PF00550 Phosphopantetheine attachment site BD65_581 PF00313 'Cold-shock' DNA-binding domain BD65_582 PF10736 Protein of unknown function (DUF2627) BD65_583 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP BD65_584 PF00324 Amino acid permease BD65_587 PF13974 YebO-like protein BD65_588 PF13996 YobH-like protein BD65_589 PF10964 Protein of unknown function (DUF2766) BD65_59 PF02801 Beta-ketoacyl synthase, C-terminal domain BD65_59 PF00109 Beta-ketoacyl synthase, N-terminal domain BD65_591 PF12833 Helix-turn-helix domain BD65_593 PF13520 Amino acid permease BD65_594 PF00005 ABC transporter BD65_594 PF00664 ABC transporter transmembrane region BD65_596 PF01590 GAF domain BD65_596 PF00563 EAL domain BD65_596 PF00360 Phytochrome region BD65_596 PF00990 Diguanylate cyclase, GGDEF domain BD65_597 PF03372 Endonuclease/Exonuclease/phosphatase family BD65_599 PF06411 HdeA/HdeB family BD65_6 PF00005 ABC transporter BD65_6 PF16326 ABC transporter C-terminal domain BD65_6 PF12848 ABC transporter BD65_60 PF01063 Amino-transferase class IV BD65_600 PF07478 D-ala D-ala ligase C-terminus BD65_600 PF01820 D-ala D-ala ligase N-terminus BD65_603 PF08241 Methyltransferase domain BD65_604 PF00313 'Cold-shock' DNA-binding domain BD65_607 PF04794 YdjC-like protein BD65_608 PF12833 Helix-turn-helix domain BD65_608 PF07883 Cupin domain BD65_609 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BD65_61 PF02618 YceG-like family BD65_610 PF00232 Glycosyl hydrolase family 1 BD65_611 PF02378 Phosphotransferase system, EIIC BD65_612 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BD65_613 PF00849 RNA pseudouridylate synthase BD65_613 PF01479 S4 domain BD65_614 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) BD65_617 PF13520 Amino acid permease BD65_62 PF02223 Thymidylate kinase BD65_621 PF00849 RNA pseudouridylate synthase BD65_622 PF00282 Pyridoxal-dependent decarboxylase conserved domain BD65_623 PF13520 Amino acid permease BD65_624 PF04960 Glutaminase BD65_629 PF13673 Acetyltransferase (GNAT) domain BD65_63 PF09115 DNA polymerase III, delta subunit, C terminal BD65_630 PF01797 Transposase IS200 like BD65_632 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BD65_632 PF00034 Cytochrome c BD65_635 PF00528 Binding-protein-dependent transport system inner membrane component BD65_636 PF00005 ABC transporter BD65_64 PF01026 TatD related DNase BD65_640 PF02203 Tar ligand binding domain homologue BD65_640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD65_640 PF00672 HAMP domain BD65_642 PF01527 Transposase BD65_643 PF13333 Integrase core domain BD65_643 PF13276 HTH-like domain BD65_643 PF00665 Integrase core domain BD65_647 PF01066 CDP-alcohol phosphatidyltransferase BD65_648 PF01541 GIY-YIG catalytic domain BD65_648 PF02151 UvrB/uvrC motif BD65_648 PF08459 UvrC Helix-hairpin-helix N-terminal BD65_649 PF00196 Bacterial regulatory proteins, luxR family BD65_649 PF00072 Response regulator receiver domain BD65_65 PF02378 Phosphotransferase system, EIIC BD65_65 PF00367 phosphotransferase system, EIIB BD65_650 PF10769 Protein of unknown function (DUF2594) BD65_653 PF00324 Amino acid permease BD65_654 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BD65_654 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BD65_654 PF01276 Orn/Lys/Arg decarboxylase, major domain BD65_655 PF13520 Amino acid permease BD65_656 PF18500 CadC C-terminal domain 1 BD65_656 PF00486 Transcriptional regulatory protein, C terminal BD65_657 PF00474 Sodium:solute symporter family BD65_658 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BD65_658 PF00171 Aldehyde dehydrogenase family BD65_658 PF14850 DNA-binding domain of Proline dehydrogenase BD65_658 PF01619 Proline dehydrogenase BD65_66 PF01230 HIT domain BD65_662 PF00291 Pyridoxal-phosphate dependent enzyme BD65_663 PF02899 Phage integrase, N-terminal SAM-like domain BD65_664 PF04545 Sigma-70, region 4 BD65_664 PF04539 Sigma-70 region 3 BD65_664 PF04542 Sigma-70 region 2 BD65_665 PF00669 Bacterial flagellin N-terminal helical region BD65_665 PF00700 Bacterial flagellin C-terminal helical region BD65_665 PF08884 Flagellin D3 domain BD65_666 PF00669 Bacterial flagellin N-terminal helical region BD65_666 PF08884 Flagellin D3 domain BD65_666 PF00700 Bacterial flagellin C-terminal helical region BD65_667 PF00700 Bacterial flagellin C-terminal helical region BD65_667 PF00669 Bacterial flagellin N-terminal helical region BD65_667 PF08884 Flagellin D3 domain BD65_668 PF02465 Flagellar hook-associated protein 2 N-terminus BD65_668 PF07195 Flagellar hook-associated protein 2 C-terminus BD65_668 PF07196 Flagellin hook IN motif BD65_669 PF02561 Flagellar protein FliS BD65_67 PF07233 Protein of unknown function (DUF1425) BD65_670 PF05400 Flagellar protein FliT BD65_671 PF12833 Helix-turn-helix domain BD65_672 PF01966 HD domain BD65_673 PF07885 Ion channel BD65_673 PF02254 TrkA-N domain BD65_674 PF01223 DNA/RNA non-specific endonuclease BD65_675 PF02049 Flagellar hook-basal body complex protein FliE BD65_676 PF01514 Secretory protein of YscJ/FliF family BD65_676 PF08345 Flagellar M-ring protein C-terminal BD65_677 PF14842 FliG N-terminal domain BD65_677 PF14841 FliG middle domain BD65_677 PF01706 FliG C-terminal domain BD65_678 PF02108 Flagellar assembly protein FliH BD65_679 PF18269 T3SS EscN ATPase C-terminal domain BD65_679 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BD65_68 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BD65_68 PF13036 Peptidoglycan-synthase activator LpoB BD65_680 PF02050 Flagellar FliJ protein BD65_681 PF02120 Flagellar hook-length control protein FliK BD65_682 PF03748 Flagellar basal body-associated protein FliL BD65_683 PF02154 Flagellar motor switch protein FliM BD65_683 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BD65_684 PF16973 Flagellar motor switch protein FliN N-terminal BD65_684 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BD65_685 PF04347 Flagellar biosynthesis protein, FliO BD65_686 PF00813 FliP family BD65_687 PF01313 Bacterial export proteins, family 3 BD65_688 PF01311 Bacterial export proteins, family 1 BD65_689 PF00669 Bacterial flagellin N-terminal helical region BD65_69 PF01636 Phosphotransferase enzyme family BD65_690 PF00460 Flagella basal body rod protein BD65_690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BD65_691 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BD65_691 PF10135 Rod binding protein BD65_692 PF02119 Flagellar P-ring protein BD65_693 PF02107 Flagellar L-ring protein BD65_694 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BD65_694 PF00460 Flagella basal body rod protein BD65_695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BD65_695 PF00460 Flagella basal body rod protein BD65_696 PF00460 Flagella basal body rod protein BD65_696 PF07559 Flagellar basal body protein FlaE BD65_696 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BD65_697 PF13860 FlgD Ig-like domain BD65_697 PF13861 FlgD Tudor-like domain BD65_697 PF03963 Flagellar hook capping protein - N-terminal region BD65_698 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BD65_698 PF00460 Flagella basal body rod protein BD65_699 PF00460 Flagella basal body rod protein BD65_7 PF04403 Paraquat-inducible protein A BD65_70 PF00933 Glycosyl hydrolase family 3 N terminal domain BD65_700 PF17656 FlgA N-terminal domain BD65_700 PF13144 Chaperone for flagella basal body P-ring formation BD65_701 PF04316 Anti-sigma-28 factor, FlgM BD65_702 PF05130 FlgN protein BD65_703 PF06366 Flagellar protein FlhE BD65_704 PF00771 FHIPEP family BD65_705 PF01312 FlhB HrpN YscU SpaS Family BD65_708 PF04344 Chemotaxis phosphatase, CheZ BD65_709 PF00072 Response regulator receiver domain BD65_71 PF05728 Uncharacterised protein family (UPF0227) BD65_710 PF01339 CheB methylesterase BD65_710 PF00072 Response regulator receiver domain BD65_711 PF01739 CheR methyltransferase, SAM binding domain BD65_711 PF03705 CheR methyltransferase, all-alpha domain BD65_712 PF02203 Tar ligand binding domain homologue BD65_712 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD65_712 PF00672 HAMP domain BD65_713 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD65_713 PF02203 Tar ligand binding domain homologue BD65_713 PF00672 HAMP domain BD65_714 PF01584 CheW-like domain BD65_715 PF01584 CheW-like domain BD65_715 PF09078 CheY binding BD65_715 PF02895 Signal transducing histidine kinase, homodimeric domain BD65_715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_715 PF01627 Hpt domain BD65_716 PF00691 OmpA family BD65_716 PF13677 Membrane MotB of proton-channel complex MotA/MotB BD65_717 PF01618 MotA/TolQ/ExbB proton channel family BD65_718 PF05280 Flagellar transcriptional activator (FlhC) BD65_719 PF05247 Flagellar transcriptional activator (FlhD) BD65_72 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD65_720 PF00582 Universal stress protein family BD65_721 PF02308 MgtC family BD65_722 PF02203 Tar ligand binding domain homologue BD65_722 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD65_722 PF00672 HAMP domain BD65_723 PF10781 Dextransucrase DSRB BD65_724 PF00313 'Cold-shock' DNA-binding domain BD65_725 PF02837 Glycosyl hydrolases family 2, sugar binding domain BD65_725 PF02929 Beta galactosidase small chain BD65_725 PF00703 Glycosyl hydrolases family 2 BD65_725 PF16353 Domain of unknown function(DUF4981) BD65_725 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BD65_726 PF16197 Ketoacyl-synthetase C-terminal extension BD65_726 PF00109 Beta-ketoacyl synthase, N-terminal domain BD65_726 PF08240 Alcohol dehydrogenase GroES-like domain BD65_726 PF00698 Acyl transferase domain BD65_726 PF02801 Beta-ketoacyl synthase, C-terminal domain BD65_726 PF08659 KR domain BD65_726 PF00550 Phosphopantetheine attachment site BD65_726 PF14765 Polyketide synthase dehydratase BD65_726 PF00107 Zinc-binding dehydrogenase BD65_727 PF10777 Inner membrane protein YlaC BD65_729 PF14001 YdfZ protein BD65_73 PF05433 Glycine zipper 2TM domain BD65_731 PF06167 Glucose-regulated metallo-peptidase M90 BD65_735 PF01648 4'-phosphopantetheinyl transferase superfamily BD65_735 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BD65_736 PF00939 Sodium:sulfate symporter transmembrane region BD65_737 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BD65_738 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase BD65_739 PF04223 Citrate lyase, alpha subunit (CitF) BD65_74 PF17757 UvrB interaction domain BD65_74 PF03461 TRCF domain BD65_74 PF00270 DEAD/DEAH box helicase BD65_74 PF02559 CarD-like/TRCF domain BD65_74 PF00271 Helicase conserved C-terminal domain BD65_740 PF03328 HpcH/HpaI aldolase/citrate lyase family BD65_741 PF06857 Malonate decarboxylase delta subunit (MdcD) BD65_742 PF08218 Citrate lyase ligase C-terminal domain BD65_743 PF17203 Single cache domain 3 BD65_743 PF00989 PAS fold BD65_743 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_743 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BD65_744 PF12431 Transcriptional regulator BD65_744 PF00072 Response regulator receiver domain BD65_745 PF00072 Response regulator receiver domain BD65_745 PF00196 Bacterial regulatory proteins, luxR family BD65_746 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_746 PF07730 Histidine kinase BD65_746 PF05231 MASE1 BD65_747 PF07690 Major Facilitator Superfamily BD65_749 PF00528 Binding-protein-dependent transport system inner membrane component BD65_75 PF02687 FtsX-like permease family BD65_75 PF12704 MacB-like periplasmic core domain BD65_750 PF00005 ABC transporter BD65_750 PF08402 TOBE domain BD65_753 PF04363 Protein of unknown function (DUF496) BD65_754 PF04632 Fusaric acid resistance protein family BD65_756 PF08411 Exonuclease C-terminal BD65_756 PF00929 Exonuclease BD65_757 PF13520 Amino acid permease BD65_759 PF07715 TonB-dependent Receptor Plug Domain BD65_759 PF00593 TonB dependent receptor BD65_76 PF00005 ABC transporter BD65_760 PF00005 ABC transporter BD65_761 PF01032 FecCD transport family BD65_763 PF00324 Amino acid permease BD65_765 PF01797 Transposase IS200 like BD65_766 PF07282 Putative transposase DNA-binding domain BD65_766 PF12323 Helix-turn-helix domain BD65_766 PF01385 Probable transposase BD65_767 PF03601 Conserved hypothetical protein 698 BD65_768 PF01261 Xylose isomerase-like TIM barrel BD65_769 PF02378 Phosphotransferase system, EIIC BD65_769 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BD65_77 PF02687 FtsX-like permease family BD65_77 PF12704 MacB-like periplasmic core domain BD65_770 PF00294 pfkB family carbohydrate kinase BD65_771 PF00381 PTS HPr component phosphorylation site BD65_771 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BD65_772 PF00293 NUDIX domain BD65_773 PF03264 NapC/NirT cytochrome c family, N-terminal region BD65_774 PF00384 Molybdopterin oxidoreductase BD65_774 PF01568 Molydopterin dinucleotide binding domain BD65_774 PF18364 Molybdopterin oxidoreductase N-terminal domain BD65_775 PF03692 Putative zinc- or iron-chelating domain BD65_776 PF03222 Tryptophan/tyrosine permease family BD65_777 PF08207 Elongation factor P (EF-P) KOW-like domain BD65_777 PF09285 Elongation factor P, C-terminal BD65_777 PF01132 Elongation factor P (EF-P) OB domain BD65_778 PF03786 D-mannonate dehydratase (UxuA) BD65_779 PF08125 Mannitol dehydrogenase C-terminal domain BD65_779 PF01232 Mannitol dehydrogenase Rossmann domain BD65_78 PF00480 ROK family BD65_781 PF07683 Cobalamin synthesis protein cobW C-terminal domain BD65_781 PF02492 CobW/HypB/UreG, nucleotide-binding domain BD65_782 PF01569 PAP2 superfamily BD65_783 PF00877 NlpC/P60 family BD65_784 PF00563 EAL domain BD65_784 PF12792 CSS motif domain associated with EAL BD65_785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BD65_786 PF00528 Binding-protein-dependent transport system inner membrane component BD65_787 PF12911 N-terminal TM domain of oligopeptide transport permease C BD65_787 PF00528 Binding-protein-dependent transport system inner membrane component BD65_788 PF00005 ABC transporter BD65_788 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD65_789 PF13989 YejG-like protein BD65_79 PF02146 Sir2 family BD65_790 PF07690 Major Facilitator Superfamily BD65_791 PF01479 S4 domain BD65_791 PF00849 RNA pseudouridylate synthase BD65_792 PF04851 Type III restriction enzyme, res subunit BD65_792 PF00271 Helicase conserved C-terminal domain BD65_793 PF01386 Ribosomal L25p family BD65_794 PF04245 37-kD nucleoid-associated bacterial protein BD65_795 PF07208 Protein of unknown function (DUF1414) BD65_796 PF11893 Domain of unknown function (DUF3413) BD65_796 PF00884 Sulfatase BD65_798 PF01872 RibD C-terminal domain BD65_8 PF02470 MlaD protein BD65_80 PF01546 Peptidase family M20/M25/M40 BD65_80 PF07687 Peptidase dimerisation domain BD65_801 PF06183 DinI-like family BD65_802 PF12706 Beta-lactamase superfamily domain BD65_803 PF00144 Beta-lactamase BD65_804 PF13302 Acetyltransferase (GNAT) domain BD65_807 PF00267 Gram-negative porin BD65_808 PF01797 Transposase IS200 like BD65_809 PF07690 Major Facilitator Superfamily BD65_81 PF08007 Cupin superfamily protein BD65_810 PF01627 Hpt domain BD65_810 PF16359 RcsD-ABL domain BD65_810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_811 PF00196 Bacterial regulatory proteins, luxR family BD65_811 PF00072 Response regulator receiver domain BD65_812 PF00072 Response regulator receiver domain BD65_812 PF09456 RcsC Alpha-Beta-Loop (ABL) BD65_812 PF00512 His Kinase A (phospho-acceptor) domain BD65_812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_813 PF03989 DNA gyrase C-terminal domain, beta-propeller BD65_813 PF00521 DNA gyrase/topoisomerase IV, subunit A BD65_815 PF03477 ATP cone domain BD65_815 PF00317 Ribonucleotide reductase, all-alpha domain BD65_815 PF02867 Ribonucleotide reductase, barrel domain BD65_816 PF00268 Ribonucleotide reductase, small chain BD65_817 PF00111 2Fe-2S iron-sulfur cluster binding domain BD65_819 PF03974 Ecotin BD65_82 PF08918 PhoQ Sensor BD65_82 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_820 PF00994 Probable molybdopterin binding domain BD65_821 PF04138 GtrA-like protein BD65_822 PF00535 Glycosyl transferase family 2 BD65_824 PF03222 Tryptophan/tyrosine permease family BD65_825 PF07437 YfaZ precursor BD65_826 PF00199 Catalase BD65_826 PF06628 Catalase-related immune-responsive BD65_827 PF00501 AMP-binding enzyme BD65_827 PF13193 AMP-binding enzyme C-terminal domain BD65_828 PF13378 Enolase C-terminal domain-like BD65_829 PF00378 Enoyl-CoA hydratase/isomerase BD65_83 PF00072 Response regulator receiver domain BD65_83 PF00486 Transcriptional regulatory protein, C terminal BD65_830 PF12697 Alpha/beta hydrolase family BD65_831 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BD65_831 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BD65_831 PF16582 Middle domain of thiamine pyrophosphate BD65_832 PF00425 chorismate binding enzyme BD65_833 PF05957 Bacterial protein of unknown function (DUF883) BD65_834 PF06496 Protein of unknown function (DUF1097) BD65_835 PF00361 Proton-conducting membrane transporter BD65_836 PF00361 Proton-conducting membrane transporter BD65_837 PF00361 Proton-conducting membrane transporter BD65_837 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BD65_838 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BD65_839 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BD65_840 PF12838 4Fe-4S dicluster domain BD65_841 PF00146 NADH dehydrogenase BD65_842 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BD65_842 PF00384 Molybdopterin oxidoreductase BD65_842 PF01568 Molydopterin dinucleotide binding domain BD65_842 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BD65_843 PF10531 SLBB domain BD65_843 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BD65_843 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BD65_845 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BD65_845 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BD65_846 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BD65_847 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BD65_848 PF03466 LysR substrate binding domain BD65_848 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_849 PF00155 Aminotransferase class I and II BD65_85 PF00206 Lyase BD65_85 PF08328 Adenylosuccinate lyase C-terminal BD65_851 PF02080 TrkA-C domain BD65_851 PF03600 Citrate transporter BD65_853 PF03887 YfbU domain BD65_854 PF04217 Protein of unknown function, DUF412 BD65_855 PF00871 Acetokinase family BD65_856 PF07085 DRTGG domain BD65_856 PF01515 Phosphate acetyl/butaryl transferase BD65_857 PF00356 Bacterial regulatory proteins, lacI family BD65_857 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BD65_858 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BD65_86 PF04356 Protein of unknown function (DUF489) BD65_860 PF03611 PTS system sugar-specific permease component BD65_861 PF00293 NUDIX domain BD65_862 PF12850 Calcineurin-like phosphoesterase superfamily domain BD65_864 PF00043 Glutathione S-transferase, C-terminal domain BD65_864 PF02798 Glutathione S-transferase, N-terminal domain BD65_865 PF08338 Domain of unknown function (DUF1731) BD65_865 PF01370 NAD dependent epimerase/dehydratase family BD65_866 PF00005 ABC transporter BD65_867 PF00528 Binding-protein-dependent transport system inner membrane component BD65_868 PF00528 Binding-protein-dependent transport system inner membrane component BD65_869 PF00497 Bacterial extracellular solute-binding proteins, family 3 BD65_870 PF02441 Flavoprotein BD65_871 PF00156 Phosphoribosyl transferase domain BD65_872 PF02674 Colicin V production protein BD65_873 PF05036 Sporulation related domain BD65_874 PF08245 Mur ligase middle domain BD65_874 PF02875 Mur ligase family, glutamate ligase domain BD65_875 PF17848 Acetyl-coA carboxylase zinc finger domain BD65_875 PF01039 Carboxyl transferase domain BD65_876 PF09335 SNARE associated Golgi protein BD65_877 PF01416 tRNA pseudouridine synthase BD65_878 PF01118 Semialdehyde dehydrogenase, NAD binding domain BD65_878 PF02774 Semialdehyde dehydrogenase, dimerisation domain BD65_879 PF11890 Domain of unknown function (DUF3410) BD65_879 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BD65_879 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BD65_88 PF00293 NUDIX domain BD65_883 PF00155 Aminotransferase class I and II BD65_884 PF00578 AhpC/TSA family BD65_89 PF00849 RNA pseudouridylate synthase BD65_890 PF00109 Beta-ketoacyl synthase, N-terminal domain BD65_890 PF02801 Beta-ketoacyl synthase, C-terminal domain BD65_891 PF01266 FAD dependent oxidoreductase BD65_891 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BD65_892 PF08891 YfcL protein BD65_893 PF04315 Elongation factor P hydroxylase BD65_894 PF01925 Sulfite exporter TauE/SafE BD65_895 PF03411 Penicillin-insensitive murein endopeptidase BD65_896 PF01264 Chorismate synthase BD65_897 PF05175 Methyltransferase small domain BD65_898 PF01713 Smr domain BD65_899 PF00300 Histidine phosphatase superfamily (branch 1) BD65_9 PF03886 ABC-type transport auxiliary lipoprotein component BD65_90 PF00180 Isocitrate/isopropylmalate dehydrogenase BD65_900 PF00378 Enoyl-CoA hydratase/isomerase BD65_900 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BD65_900 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BD65_901 PF00108 Thiolase, N-terminal domain BD65_901 PF02803 Thiolase, C-terminal domain BD65_902 PF04175 Protein of unknown function (DUF406) BD65_903 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BD65_904 PF04333 MlaA lipoprotein BD65_905 PF03918 Cytochrome C biogenesis protein BD65_906 PF03918 Cytochrome C biogenesis protein BD65_907 PF08534 Redoxin BD65_908 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BD65_908 PF01578 Cytochrome C assembly protein BD65_909 PF03100 CcmE BD65_91 PF00765 Autoinducer synthase BD65_910 PF04995 Heme exporter protein D (CcmD) BD65_911 PF01578 Cytochrome C assembly protein BD65_912 PF03379 CcmB protein BD65_913 PF00005 ABC transporter BD65_916 PF08274 PhnA Zinc-Ribbon BD65_916 PF03831 PhnA domain BD65_917 PF13406 Transglycosylase SLT domain BD65_919 PF01292 Prokaryotic cytochrome b561 BD65_92 PF00196 Bacterial regulatory proteins, luxR family BD65_92 PF03472 Autoinducer binding domain BD65_920 PF00155 Aminotransferase class I and II BD65_921 PF07350 Protein of unknown function (DUF1479) BD65_922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_922 PF06580 Histidine kinase BD65_922 PF07694 5TMR of 5TMR-LYT BD65_923 PF04397 LytTr DNA-binding domain BD65_923 PF00072 Response regulator receiver domain BD65_924 PF07690 Major Facilitator Superfamily BD65_925 PF02685 Glucokinase BD65_927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BD65_927 PF03466 LysR substrate binding domain BD65_929 PF01566 Natural resistance-associated macrophage protein BD65_930 PF07670 Nucleoside recognition BD65_930 PF01773 Na+ dependent nucleoside transporter N-terminus BD65_930 PF07662 Na+ dependent nucleoside transporter C-terminus BD65_936 PF00749 tRNA synthetases class I (E and Q), catalytic domain BD65_94 PF00232 Glycosyl hydrolase family 1 BD65_941 PF12843 Putative quorum-sensing-regulated virulence factor BD65_942 PF01653 NAD-dependent DNA ligase adenylation domain BD65_942 PF03120 NAD-dependent DNA ligase OB-fold domain BD65_942 PF00533 BRCA1 C Terminus (BRCT) domain BD65_942 PF12826 Helix-hairpin-helix motif BD65_942 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BD65_943 PF04354 ZipA, C-terminal FtsZ-binding domain BD65_945 PF00291 Pyridoxal-phosphate dependent enzyme BD65_946 PF00381 PTS HPr component phosphorylation site BD65_947 PF02896 PEP-utilising enzyme, TIM barrel domain BD65_947 PF00391 PEP-utilising enzyme, mobile domain BD65_947 PF05524 PEP-utilising enzyme, N-terminal BD65_948 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BD65_949 PF00291 Pyridoxal-phosphate dependent enzyme BD65_95 PF01432 Peptidase family M3 BD65_950 PF00005 ABC transporter BD65_951 PF00528 Binding-protein-dependent transport system inner membrane component BD65_952 PF00528 Binding-protein-dependent transport system inner membrane component BD65_954 PF07690 Major Facilitator Superfamily BD65_955 PF01418 Helix-turn-helix domain, rpiR family BD65_955 PF01380 SIS domain BD65_956 PF04074 YhcH/YjgK/YiaL BD65_957 PF00480 ROK family BD65_958 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase BD65_959 PF00701 Dihydrodipicolinate synthetase family BD65_96 PF00672 HAMP domain BD65_96 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD65_96 PF02203 Tar ligand binding domain homologue BD65_960 PF04261 Dyp-type peroxidase family BD65_961 PF06572 Protein of unknown function (DUF1131) BD65_962 PF04076 Bacterial OB fold (BOF) protein BD65_963 PF00583 Acetyltransferase (GNAT) family BD65_964 PF01218 Coproporphyrinogen III oxidase BD65_965 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BD65_966 PF01515 Phosphate acetyl/butaryl transferase BD65_966 PF00390 Malic enzyme, N-terminal domain BD65_966 PF03949 Malic enzyme, NAD binding domain BD65_967 PF00293 NUDIX domain BD65_968 PF03264 NapC/NirT cytochrome c family, N-terminal region BD65_969 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BD65_97 PF03390 2-hydroxycarboxylate transporter family BD65_970 PF10518 TAT (twin-arginine translocation) pathway signal sequence BD65_970 PF00384 Molybdopterin oxidoreductase BD65_970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BD65_970 PF01568 Molydopterin dinucleotide binding domain BD65_971 PF03927 NapD protein BD65_972 PF00037 4Fe-4S binding domain BD65_972 PF13187 4Fe-4S dicluster domain BD65_972 PF12800 4Fe-4S binding domain BD65_973 PF00196 Bacterial regulatory proteins, luxR family BD65_973 PF00072 Response regulator receiver domain BD65_975 PF00873 AcrB/AcrD/AcrF family BD65_976 PF01817 Chorismate mutase type II BD65_978 PF03960 ArsC family BD65_979 PF07687 Peptidase dimerisation domain BD65_979 PF01546 Peptidase family M20/M25/M40 BD65_98 PF00072 Response regulator receiver domain BD65_980 PF02557 D-alanyl-D-alanine carboxypeptidase BD65_981 PF13980 Uncharacterised protein family (UPF0370) BD65_982 PF02230 Phospholipase/Carboxylesterase BD65_983 PF08351 Domain of unknown function (DUF1726) BD65_983 PF13718 GNAT acetyltransferase 2 BD65_983 PF17176 tRNA-binding domain BD65_983 PF05127 Helicase BD65_984 PF04284 Protein of unknown function (DUF441) BD65_985 PF01259 SAICAR synthetase BD65_986 PF06804 NlpB/DapX lipoprotein BD65_987 PF00701 Dihydrodipicolinate synthetase family BD65_988 PF01842 ACT domain BD65_989 PF00578 AhpC/TSA family BD65_99 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BD65_99 PF17203 Single cache domain 3 BD65_99 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD65_99 PF00989 PAS fold BD65_990 PF01594 AI-2E family transporter BD65_991 PF07720 Tetratricopeptide repeat BD65_991 PF01435 Peptidase family M48 BD65_992 PF03960 ArsC family BD65_993 PF00308 Bacterial dnaA protein BD65_994 PF00860 Permease family BD65_996 PF00586 AIR synthase related protein, N-terminal domain BD65_996 PF02769 AIR synthase related protein, C-terminal domain BD65_997 PF00551 Formyl transferase BD65_998 PF13302 Acetyltransferase (GNAT) domain BD65_999 PF00005 ABC transporter