locus-tag class description FFE93_000005 PF00308 Bacterial dnaA protein FFE93_000005 PF11638 DnaA N-terminal domain FFE93_000005 PF08299 Bacterial dnaA protein helix-turn-helix FFE93_000010 PF02768 DNA polymerase III beta subunit, C-terminal domain FFE93_000010 PF02767 DNA polymerase III beta subunit, central domain FFE93_000010 PF00712 DNA polymerase III beta subunit, N-terminal domain FFE93_000015 PF02463 RecF/RecN/SMC N terminal domain FFE93_000020 PF01751 Toprim domain FFE93_000020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_000020 PF00204 DNA gyrase B FFE93_000020 PF00986 DNA gyrase B subunit, carboxyl terminus FFE93_000020 PF18053 DNA gyrase B subunit insert domain FFE93_000030 PF11254 Protein of unknown function (DUF3053) FFE93_000035 PF02092 Glycyl-tRNA synthetase beta subunit FFE93_000035 PF05746 DALR anticodon binding domain FFE93_000040 PF02091 Glycyl-tRNA synthetase alpha subunit FFE93_000045 PF03352 Methyladenine glycosylase FFE93_000050 PF00583 Acetyltransferase (GNAT) family FFE93_000060 PF00691 OmpA family FFE93_000060 PF13488 Glycine zipper FFE93_000070 PF07690 Major Facilitator Superfamily FFE93_000075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FFE93_000075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FFE93_000080 PF00128 Alpha amylase, catalytic domain FFE93_000085 PF00155 Aminotransferase class I and II FFE93_000090 PF02080 TrkA-C domain FFE93_000090 PF06826 Predicted Permease Membrane Region FFE93_000095 PF00011 Hsp20/alpha crystallin family FFE93_000100 PF00011 Hsp20/alpha crystallin family FFE93_000105 PF07119 Protein of unknown function (DUF1375) FFE93_000110 PF12566 Protein of unknown function (DUF3748) FFE93_000110 PF07676 WD40-like Beta Propeller Repeat FFE93_000115 PF09217 Restriction endonuclease EcoRII, N-terminal FFE93_000115 PF09019 EcoRII C terminal FFE93_000120 PF03852 DNA mismatch endonuclease Vsr FFE93_000125 PF00145 C-5 cytosine-specific DNA methylase FFE93_000125 PF18284 DNA methylase N-terminal domain FFE93_000130 PF08348 YheO-like PAS domain FFE93_000130 PF13309 HTH domain FFE93_000135 PF00291 Pyridoxal-phosphate dependent enzyme FFE93_000140 PF02423 Ornithine cyclodeaminase/mu-crystallin family FFE93_000145 PF02378 Phosphotransferase system, EIIC FFE93_000145 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FFE93_000145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FFE93_000150 PF01232 Mannitol dehydrogenase Rossmann domain FFE93_000150 PF08125 Mannitol dehydrogenase C-terminal domain FFE93_000155 PF05068 Mannitol repressor FFE93_000165 PF00155 Aminotransferase class I and II FFE93_000165 PF00392 Bacterial regulatory proteins, gntR family FFE93_000170 PF10928 Protein of unknown function (DUF2810) FFE93_000180 PF04221 RelB antitoxin FFE93_000185 PF03473 MOSC domain FFE93_000185 PF03475 3-alpha domain FFE93_000190 PF00672 HAMP domain FFE93_000190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_000190 PF02203 Tar ligand binding domain homologue FFE93_000200 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FFE93_000200 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FFE93_000205 PF02634 FdhD/NarQ family FFE93_000215 PF13247 4Fe-4S dicluster domain FFE93_000215 PF09163 Formate dehydrogenase N, transmembrane FFE93_000220 PF01292 Prokaryotic cytochrome b561 FFE93_000225 PF04216 Protein involved in formate dehydrogenase formation FFE93_000230 PF12390 Selenocysteine synthase N terminal FFE93_000230 PF03841 L-seryl-tRNA selenium transferase FFE93_000235 PF09107 Elongation factor SelB, winged helix FFE93_000235 PF09106 Elongation factor SelB, winged helix FFE93_000235 PF00009 Elongation factor Tu GTP binding domain FFE93_000235 PF03144 Elongation factor Tu domain 2 FFE93_000240 PF01261 Xylose isomerase-like TIM barrel FFE93_000250 PF07690 Major Facilitator Superfamily FFE93_000255 PF01757 Acyltransferase family FFE93_000270 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FFE93_000270 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FFE93_000280 PF13407 Periplasmic binding protein domain FFE93_000285 PF00005 ABC transporter FFE93_000290 PF02653 Branched-chain amino acid transport system / permease component FFE93_000295 PF12833 Helix-turn-helix domain FFE93_000300 PF03466 LysR substrate binding domain FFE93_000300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_000305 PF00144 Beta-lactamase FFE93_000310 PF03960 ArsC family FFE93_000335 PF08340 Domain of unknown function (DUF1732) FFE93_000335 PF03755 YicC-like family, N-terminal region FFE93_000340 PF01138 3' exoribonuclease family, domain 1 FFE93_000340 PF03725 3' exoribonuclease family, domain 2 FFE93_000345 PF00156 Phosphoribosyl transferase domain FFE93_000350 PF00375 Sodium:dicarboxylate symporter family FFE93_000355 PF00675 Insulinase (Peptidase family M16) FFE93_000355 PF05193 Peptidase M16 inactive domain FFE93_000360 PF00294 pfkB family carbohydrate kinase FFE93_000365 PF01361 Tautomerase enzyme FFE93_000370 PF00563 EAL domain FFE93_000375 PF05170 AsmA family FFE93_000380 PF02611 CDP-diacylglycerol pyrophosphatase FFE93_000385 PF03631 Virulence factor BrkB FFE93_000390 PF03212 Pertactin FFE93_000390 PF02395 Immunoglobulin A1 protease FFE93_000395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FFE93_000395 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFE93_000400 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FFE93_000405 PF01432 Peptidase family M3 FFE93_000410 PF04445 Putative SAM-dependent methyltransferase FFE93_000415 PF00413 Matrixin FFE93_000415 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) FFE93_000415 PF08548 Peptidase M10 serralysin C terminal FFE93_000420 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FFE93_000420 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FFE93_000430 PF03466 LysR substrate binding domain FFE93_000430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_000450 PF02917 Pertussis toxin, subunit 1 FFE93_000455 PF01526 Tn3 transposase DDE domain FFE93_000455 PF13700 Domain of unknown function (DUF4158) FFE93_000460 PF00239 Resolvase, N terminal domain FFE93_000460 PF02796 Helix-turn-helix domain of resolvase FFE93_000465 PF04055 Radical SAM superfamily FFE93_000465 PF06969 HemN C-terminal domain FFE93_000480 PF04199 Putative cyclase FFE93_000485 PF02801 Beta-ketoacyl synthase, C-terminal domain FFE93_000485 PF00109 Beta-ketoacyl synthase, N-terminal domain FFE93_000510 PF07690 Major Facilitator Superfamily FFE93_000525 PF00582 Universal stress protein family FFE93_000530 PF10625 Universal stress protein B (UspB) FFE93_000535 PF01384 Phosphate transporter family FFE93_000565 PF02753 Pili assembly chaperone PapD, C-terminal domain FFE93_000565 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FFE93_000570 PF00577 Outer membrane usher protein FFE93_000570 PF13954 PapC N-terminal domain FFE93_000570 PF13953 PapC C-terminal domain FFE93_000575 PF16970 Type-1 fimbrial protein, A FFE93_000585 PF00583 Acetyltransferase (GNAT) family FFE93_000590 PF17954 Quercetinase C-terminal cupin domain FFE93_000590 PF02678 Pirin FFE93_000595 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FFE93_000595 PF00356 Bacterial regulatory proteins, lacI family FFE93_000600 PF02447 GntP family permease FFE93_000605 PF01202 Shikimate kinase FFE93_000610 PF01914 MarC family integral membrane protein FFE93_000615 PF01118 Semialdehyde dehydrogenase, NAD binding domain FFE93_000615 PF02774 Semialdehyde dehydrogenase, dimerisation domain FFE93_000620 PF07694 5TMR of 5TMR-LYT FFE93_000620 PF06580 Histidine kinase FFE93_000625 PF02806 Alpha amylase, C-terminal all-beta domain FFE93_000625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FFE93_000625 PF00128 Alpha amylase, catalytic domain FFE93_000630 PF18390 Glycogen debranching enzyme C-terminal domain FFE93_000630 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FFE93_000630 PF00128 Alpha amylase, catalytic domain FFE93_000635 PF00483 Nucleotidyl transferase FFE93_000640 PF00534 Glycosyl transferases group 1 FFE93_000640 PF08323 Starch synthase catalytic domain FFE93_000645 PF00343 Carbohydrate phosphorylase FFE93_000650 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FFE93_000650 PF01266 FAD dependent oxidoreductase FFE93_000655 PF08220 DeoR-like helix-turn-helix domain FFE93_000655 PF00455 DeoR C terminal sensor domain FFE93_000660 PF01694 Rhomboid family FFE93_000660 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease FFE93_000665 PF00581 Rhodanese-like domain FFE93_000680 PF17874 MalT-like TPR region FFE93_000680 PF00196 Bacterial regulatory proteins, luxR family FFE93_000685 PF00343 Carbohydrate phosphorylase FFE93_000690 PF02446 4-alpha-glucanotransferase FFE93_000695 PF01521 Iron-sulphur cluster biosynthesis FFE93_000695 PF01106 NifU-like domain FFE93_000700 PF00156 Phosphoribosyl transferase domain FFE93_000705 PF00561 alpha/beta hydrolase fold FFE93_000710 PF09012 FeoC like transcriptional regulator FFE93_000715 PF02421 Ferrous iron transport protein B FFE93_000715 PF07670 Nucleoside recognition FFE93_000715 PF17910 FeoB cytosolic helical domain FFE93_000715 PF07664 Ferrous iron transport protein B C terminus FFE93_000720 PF04023 FeoA domain FFE93_000725 PF00575 S1 RNA binding domain FFE93_000725 PF17674 HHH domain FFE93_000725 PF09371 Tex-like protein N-terminal domain FFE93_000725 PF16921 Tex protein YqgF-like domain FFE93_000735 PF01272 Transcription elongation factor, GreA/GreB, C-term FFE93_000735 PF03449 Transcription elongation factor, N-terminal FFE93_000740 PF00072 Response regulator receiver domain FFE93_000740 PF00486 Transcriptional regulatory protein, C terminal FFE93_000745 PF00512 His Kinase A (phospho-acceptor) domain FFE93_000745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_000745 PF00672 HAMP domain FFE93_000755 PF01293 Phosphoenolpyruvate carboxykinase FFE93_000760 PF01430 Hsp33 protein FFE93_000765 PF01479 S4 domain FFE93_000770 PF13419 Haloacid dehalogenase-like hydrolase FFE93_000775 PF07095 Intracellular growth attenuator protein IgaA FFE93_000780 PF00293 NUDIX domain FFE93_000785 PF00905 Penicillin binding protein transpeptidase domain FFE93_000785 PF17092 Penicillin-binding protein OB-like domain FFE93_000785 PF00912 Transglycosylase FFE93_000810 PF03958 Bacterial type II/III secretion system short domain FFE93_000810 PF00263 Bacterial type II and III secretion system protein FFE93_000815 PF01202 Shikimate kinase FFE93_000820 PF01761 3-dehydroquinate synthase FFE93_000825 PF05036 Sporulation related domain FFE93_000830 PF02086 D12 class N6 adenine-specific DNA methyltransferase FFE93_000835 PF00834 Ribulose-phosphate 3 epimerase family FFE93_000840 PF13419 Haloacid dehalogenase-like hydrolase FFE93_000845 PF00579 tRNA synthetases class I (W and Y) FFE93_000850 PF10414 Sirohaem synthase dimerisation region FFE93_000850 PF14824 Sirohaem biosynthesis protein central FFE93_000850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FFE93_000855 PF01226 Formate/nitrite transporter FFE93_000860 PF13806 Rieske-like [2Fe-2S] domain FFE93_000865 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFE93_000865 PF04324 BFD-like [2Fe-2S] binding domain FFE93_000865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FFE93_000865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FFE93_000865 PF18267 Rubredoxin NAD+ reductase C-terminal domain FFE93_000870 PF07969 Amidohydrolase family FFE93_000875 PF07690 Major Facilitator Superfamily FFE93_000890 PF00356 Bacterial regulatory proteins, lacI family FFE93_000895 PF11975 Family 4 glycosyl hydrolase C-terminal domain FFE93_000895 PF02056 Family 4 glycosyl hydrolase FFE93_000900 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FFE93_000905 PF05872 Bacterial protein of unknown function (DUF853) FFE93_000910 PF00117 Glutamine amidotransferase class-I FFE93_000915 PF00202 Aminotransferase class-III FFE93_000920 PF12805 FUSC-like inner membrane protein yccS FFE93_000925 PF00027 Cyclic nucleotide-binding domain FFE93_000925 PF13545 Crp-like helix-turn-helix domain FFE93_000930 PF02566 OsmC-like protein FFE93_000935 PF00485 Phosphoribulokinase / Uridine kinase family FFE93_000940 PF06794 Uncharacterised protein family (UPF0270) FFE93_000945 PF00561 alpha/beta hydrolase fold FFE93_000950 PF01810 LysE type translocator FFE93_000955 PF02567 Phenazine biosynthesis-like protein FFE93_000960 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FFE93_000965 PF00005 ABC transporter FFE93_000970 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_000975 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FFE93_000980 PF00535 Glycosyl transferase family 2 FFE93_000985 PF12848 ABC transporter FFE93_000985 PF00005 ABC transporter FFE93_000990 PF02525 Flavodoxin-like fold FFE93_000995 PF00999 Sodium/hydrogen exchanger family FFE93_000995 PF02254 TrkA-N domain FFE93_001000 PF09526 Probable metal-binding protein (DUF2387) FFE93_001005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FFE93_001010 PF04102 SlyX FFE93_001015 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FFE93_001015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FFE93_001020 PF08348 YheO-like PAS domain FFE93_001020 PF13309 HTH domain FFE93_001025 PF02635 DsrE/DsrF-like family FFE93_001030 PF02635 DsrE/DsrF-like family FFE93_001035 PF04077 DsrH like protein FFE93_001040 PF00164 Ribosomal protein S12/S23 FFE93_001045 PF00177 Ribosomal protein S7p/S5e FFE93_001050 PF00679 Elongation factor G C-terminus FFE93_001050 PF14492 Elongation Factor G, domain II FFE93_001050 PF03764 Elongation factor G, domain IV FFE93_001050 PF00009 Elongation factor Tu GTP binding domain FFE93_001050 PF03144 Elongation factor Tu domain 2 FFE93_001055 PF03144 Elongation factor Tu domain 2 FFE93_001055 PF03143 Elongation factor Tu C-terminal domain FFE93_001055 PF00009 Elongation factor Tu GTP binding domain FFE93_001060 PF04324 BFD-like [2Fe-2S] binding domain FFE93_001065 PF00210 Ferritin-like domain FFE93_001075 PF00338 Ribosomal protein S10p/S20e FFE93_001080 PF00297 Ribosomal protein L3 FFE93_001085 PF00573 Ribosomal protein L4/L1 family FFE93_001090 PF00276 Ribosomal protein L23 FFE93_001095 PF00181 Ribosomal Proteins L2, RNA binding domain FFE93_001095 PF03947 Ribosomal Proteins L2, C-terminal domain FFE93_001100 PF00203 Ribosomal protein S19 FFE93_001105 PF00237 Ribosomal protein L22p/L17e FFE93_001110 PF00189 Ribosomal protein S3, C-terminal domain FFE93_001110 PF07650 KH domain FFE93_001115 PF00252 Ribosomal protein L16p/L10e FFE93_001120 PF00831 Ribosomal L29 protein FFE93_001125 PF00366 Ribosomal protein S17 FFE93_001130 PF00238 Ribosomal protein L14p/L23e FFE93_001135 PF00467 KOW motif FFE93_001135 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FFE93_001140 PF00673 ribosomal L5P family C-terminus FFE93_001140 PF00281 Ribosomal protein L5 FFE93_001145 PF00253 Ribosomal protein S14p/S29e FFE93_001150 PF00410 Ribosomal protein S8 FFE93_001155 PF00347 Ribosomal protein L6 FFE93_001160 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FFE93_001165 PF00333 Ribosomal protein S5, N-terminal domain FFE93_001165 PF03719 Ribosomal protein S5, C-terminal domain FFE93_001170 PF00327 Ribosomal protein L30p/L7e FFE93_001175 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FFE93_001180 PF00344 SecY translocase FFE93_001185 PF00444 Ribosomal protein L36 FFE93_001190 PF00416 Ribosomal protein S13/S18 FFE93_001195 PF00411 Ribosomal protein S11 FFE93_001200 PF00163 Ribosomal protein S4/S9 N-terminal domain FFE93_001200 PF01479 S4 domain FFE93_001205 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FFE93_001205 PF01000 RNA polymerase Rpb3/RpoA insert domain FFE93_001205 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FFE93_001210 PF01196 Ribosomal protein L17 FFE93_001215 PF09350 Domain of unknown function (DUF1992) FFE93_001220 PF13411 MerR HTH family regulatory protein FFE93_001225 PF03889 Alternative ribosome-rescue factor A FFE93_001230 PF01741 Large-conductance mechanosensitive channel, MscL FFE93_001235 PF02254 TrkA-N domain FFE93_001235 PF02080 TrkA-C domain FFE93_001240 PF01189 16S rRNA methyltransferase RsmB/F FFE93_001240 PF01029 NusB family FFE93_001245 PF00551 Formyl transferase FFE93_001245 PF02911 Formyl transferase, C-terminal domain FFE93_001250 PF01327 Polypeptide deformylase FFE93_001255 PF17782 DprA winged helix domain FFE93_001255 PF02481 DNA recombination-mediator protein A FFE93_001260 PF04361 Protein of unknown function (DUF494) FFE93_001265 PF01396 Topoisomerase DNA binding C4 zinc finger FFE93_001270 PF01300 Telomere recombination FFE93_001275 PF08501 Shikimate dehydrogenase substrate binding domain FFE93_001275 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FFE93_001275 PF01488 Shikimate / quinate 5-dehydrogenase FFE93_001280 PF00132 Bacterial transferase hexapeptide (six repeats) FFE93_001315 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FFE93_001315 PF01565 FAD binding domain FFE93_001320 PF02237 Biotin protein ligase C terminal domain FFE93_001320 PF03099 Biotin/lipoate A/B protein ligase family FFE93_001320 PF08279 HTH domain FFE93_001325 PF00485 Phosphoribulokinase / Uridine kinase family FFE93_001330 PF13673 Acetyltransferase (GNAT) domain FFE93_001360 PF03143 Elongation factor Tu C-terminal domain FFE93_001360 PF00009 Elongation factor Tu GTP binding domain FFE93_001360 PF03144 Elongation factor Tu domain 2 FFE93_001370 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FFE93_001375 PF00467 KOW motif FFE93_001375 PF02357 Transcription termination factor nusG FFE93_001380 PF00298 Ribosomal protein L11, RNA binding domain FFE93_001380 PF03946 Ribosomal protein L11, N-terminal domain FFE93_001385 PF00687 Ribosomal protein L1p/L10e family FFE93_001390 PF00466 Ribosomal protein L10 FFE93_001395 PF16320 Ribosomal protein L7/L12 dimerisation domain FFE93_001395 PF00542 Ribosomal protein L7/L12 C-terminal domain FFE93_001400 PF10385 RNA polymerase beta subunit external 1 domain FFE93_001400 PF04563 RNA polymerase beta subunit FFE93_001400 PF04561 RNA polymerase Rpb2, domain 2 FFE93_001400 PF04565 RNA polymerase Rpb2, domain 3 FFE93_001400 PF04560 RNA polymerase Rpb2, domain 7 FFE93_001400 PF00562 RNA polymerase Rpb2, domain 6 FFE93_001405 PF04983 RNA polymerase Rpb1, domain 3 FFE93_001405 PF00623 RNA polymerase Rpb1, domain 2 FFE93_001405 PF05000 RNA polymerase Rpb1, domain 4 FFE93_001405 PF04998 RNA polymerase Rpb1, domain 5 FFE93_001405 PF04997 RNA polymerase Rpb1, domain 1 FFE93_001410 PF00388 Phosphatidylinositol-specific phospholipase C, X domain FFE93_001420 PF06968 Biotin and Thiamin Synthesis associated domain FFE93_001420 PF04055 Radical SAM superfamily FFE93_001425 PF05690 Thiazole biosynthesis protein ThiG FFE93_001430 PF02597 ThiS family FFE93_001435 PF00899 ThiF family FFE93_001440 PF02581 Thiamine monophosphate synthase FFE93_001445 PF13667 ThiC-associated domain FFE93_001445 PF01964 Radical SAM ThiC family FFE93_001450 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ FFE93_001455 PF09297 NADH pyrophosphatase zinc ribbon domain FFE93_001455 PF00293 NUDIX domain FFE93_001460 PF01208 Uroporphyrinogen decarboxylase (URO-D) FFE93_001465 PF04493 Endonuclease V FFE93_001470 PF04222 Protein of unknown function (DUF416) FFE93_001475 PF00216 Bacterial DNA-binding protein FFE93_001480 PF07356 Protein of unknown function (DUF1481) FFE93_001485 PF02844 Phosphoribosylglycinamide synthetase, N domain FFE93_001485 PF02843 Phosphoribosylglycinamide synthetase, C domain FFE93_001485 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FFE93_001490 PF02142 MGS-like domain FFE93_001490 PF01808 AICARFT/IMPCHase bienzyme FFE93_001535 PF04204 Homoserine O-succinyltransferase FFE93_001540 PF01274 Malate synthase FFE93_001550 PF00463 Isocitrate lyase family FFE93_001555 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) FFE93_001560 PF01614 Bacterial transcriptional regulator FFE93_001560 PF09339 IclR helix-turn-helix domain FFE93_001565 PF02965 Vitamin B12 dependent methionine synthase, activation domain FFE93_001565 PF02574 Homocysteine S-methyltransferase FFE93_001565 PF02310 B12 binding domain FFE93_001565 PF02607 B12 binding domain FFE93_001565 PF00809 Pterin binding enzyme FFE93_001570 PF13332 Hemagglutinin repeat FFE93_001570 PF05860 haemagglutination activity domain FFE93_001575 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FFE93_001575 PF08479 POTRA domain, ShlB-type FFE93_001575 PF17287 POTRA domain FFE93_001580 PF00696 Amino acid kinase family FFE93_001580 PF01842 ACT domain FFE93_001585 PF00342 Phosphoglucose isomerase FFE93_001590 PF06146 Phosphate-starvation-inducible E FFE93_001595 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_001600 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_001600 PF14785 Maltose transport system permease protein MalF P2 domain FFE93_001605 PF01547 Bacterial extracellular solute-binding protein FFE93_001615 PF17912 MalK OB fold domain FFE93_001615 PF00005 ABC transporter FFE93_001620 PF02264 LamB porin FFE93_001625 PF07148 Maltose operon periplasmic protein precursor (MalM) FFE93_001630 PF04345 Chorismate lyase FFE93_001635 PF01040 UbiA prenyltransferase family FFE93_001640 PF01553 Acyltransferase FFE93_001645 PF01219 Prokaryotic diacylglycerol kinase FFE93_001650 PF01726 LexA DNA binding domain FFE93_001650 PF00717 Peptidase S24-like FFE93_001655 PF05532 CsbD-like FFE93_001660 PF01475 Ferric uptake regulator family FFE93_001665 PF01207 Dihydrouridine synthase (Dus) FFE93_001670 PF09583 Phage shock protein G (Phageshock_PspG) FFE93_001680 PF00107 Zinc-binding dehydrogenase FFE93_001680 PF08240 Alcohol dehydrogenase GroES-like domain FFE93_001685 PF00772 DnaB-like helicase N terminal domain FFE93_001685 PF03796 DnaB-like helicase C terminal domain FFE93_001690 PF00842 Alanine racemase, C-terminal domain FFE93_001690 PF01168 Alanine racemase, N-terminal domain FFE93_001695 PF00155 Aminotransferase class I and II FFE93_001700 PF04237 YjbR FFE93_001705 PF17755 UvrA DNA-binding domain FFE93_001705 PF17760 UvrA interaction domain FFE93_001705 PF00005 ABC transporter FFE93_001710 PF00436 Single-strand binding protein family FFE93_001730 PF00860 Permease family FFE93_001735 PF00999 Sodium/hydrogen exchanger family FFE93_001745 PF00072 Response regulator receiver domain FFE93_001745 PF00196 Bacterial regulatory proteins, luxR family FFE93_001750 PF00005 ABC transporter FFE93_001755 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_001760 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_001765 PF00497 Bacterial extracellular solute-binding proteins, family 3 FFE93_001770 PF03279 Bacterial lipid A biosynthesis acyltransferase FFE93_001780 PF00005 ABC transporter FFE93_001785 PF02653 Branched-chain amino acid transport system / permease component FFE93_001795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FFE93_001795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FFE93_001800 PF01380 SIS domain FFE93_001800 PF00571 CBS domain FFE93_001805 PF00939 Sodium:sulfate symporter transmembrane region FFE93_001810 PF00313 'Cold-shock' DNA-binding domain FFE93_001815 PF00313 'Cold-shock' DNA-binding domain FFE93_001820 PF05433 Glycine zipper 2TM domain FFE93_001825 PF00990 Diguanylate cyclase, GGDEF domain FFE93_001825 PF08448 PAS fold FFE93_001830 PF02954 Bacterial regulatory protein, Fis family FFE93_001835 PF01207 Dihydrouridine synthase (Dus) FFE93_001845 PF00474 Sodium:solute symporter family FFE93_001850 PF06196 Protein of unknown function (DUF997) FFE93_001855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FFE93_001855 PF02785 Biotin carboxylase C-terminal domain FFE93_001855 PF00289 Biotin carboxylase, N-terminal domain FFE93_001860 PF00364 Biotin-requiring enzyme FFE93_001865 PF01220 Dehydroquinase class II FFE93_001870 PF01794 Ferric reductase like transmembrane component FFE93_001875 PF00174 Oxidoreductase molybdopterin binding domain FFE93_001880 PF00107 Zinc-binding dehydrogenase FFE93_001880 PF08240 Alcohol dehydrogenase GroES-like domain FFE93_001885 PF00563 EAL domain FFE93_001885 PF17157 Gammaproteobacterial periplasmic sensor domain FFE93_001885 PF00990 Diguanylate cyclase, GGDEF domain FFE93_001895 PF04085 rod shape-determining protein MreC FFE93_001900 PF04093 rod shape-determining protein MreD FFE93_001905 PF02545 Maf-like protein FFE93_001910 PF00575 S1 RNA binding domain FFE93_001910 PF10150 Ribonuclease E/G family FFE93_001915 PF13116 Protein of unknown function FFE93_001915 PF13502 AsmA-like C-terminal region FFE93_001920 PF00795 Carbon-nitrogen hydrolase FFE93_001925 PF01523 Putative modulator of DNA gyrase FFE93_001930 PF03466 LysR substrate binding domain FFE93_001930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_001935 PF07869 Protein of unknown function (DUF1656) FFE93_001940 PF13533 Biotin-lipoyl like FFE93_001945 PF04632 Fusaric acid resistance protein family FFE93_001950 PF00171 Aldehyde dehydrogenase family FFE93_001960 PF01337 Barstar (barnase inhibitor) FFE93_001965 PF04751 Protein of unknown function (DUF615) FFE93_001970 PF02899 Phage integrase, N-terminal SAM-like domain FFE93_001970 PF00589 Phage integrase family FFE93_002005 PF02086 D12 class N6 adenine-specific DNA methyltransferase FFE93_002010 PF05840 Bacteriophage replication gene A protein (GPA) FFE93_002160 PF17482 Phage tail sheath C-terminal domain FFE93_002160 PF04984 Phage tail sheath protein subtilisin-like domain FFE93_002195 PF04606 Ogr/Delta-like zinc finger FFE93_002200 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FFE93_002210 PF01523 Putative modulator of DNA gyrase FFE93_002215 PF07361 Cytochrome b562 FFE93_002220 PF01272 Transcription elongation factor, GreA/GreB, C-term FFE93_002220 PF14760 Rnk N-terminus FFE93_002250 PF01979 Amidohydrolase family FFE93_002255 PF03841 L-seryl-tRNA selenium transferase FFE93_002260 PF07071 KDGP aldolase FFE93_002265 PF05043 Mga helix-turn-helix domain FFE93_002265 PF00874 PRD domain FFE93_002265 PF08279 HTH domain FFE93_002265 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FFE93_002270 PF00690 Cation transporter/ATPase, N-terminus FFE93_002270 PF00689 Cation transporting ATPase, C-terminus FFE93_002275 PF00356 Bacterial regulatory proteins, lacI family FFE93_002280 PF00367 phosphotransferase system, EIIB FFE93_002280 PF02378 Phosphotransferase system, EIIC FFE93_002285 PF11941 Domain of unknown function (DUF3459) FFE93_002285 PF00128 Alpha amylase, catalytic domain FFE93_002300 PF04168 A predicted alpha-helical domain with a conserved ER motif. FFE93_002300 PF14403 Circularly permuted ATP-grasp type 2 FFE93_002305 PF14403 Circularly permuted ATP-grasp type 2 FFE93_002310 PF01042 Endoribonuclease L-PSP FFE93_002315 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain FFE93_002315 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain FFE93_002320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FFE93_002320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FFE93_002325 PF00381 PTS HPr component phosphorylation site FFE93_002330 PF03668 P-loop ATPase protein family FFE93_002335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FFE93_002340 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FFE93_002345 PF04963 Sigma-54 factor, core binding domain FFE93_002345 PF04552 Sigma-54, DNA binding domain FFE93_002345 PF00309 Sigma-54 factor, Activator interacting domain (AID) FFE93_002350 PF00005 ABC transporter FFE93_002350 PF12399 Branched-chain amino acid ATP-binding cassette transporter FFE93_002355 PF03968 OstA-like protein FFE93_002360 PF06835 Lipopolysaccharide-assembly, LptC-related FFE93_002370 PF00571 CBS domain FFE93_002370 PF01380 SIS domain FFE93_002375 PF01699 Sodium/calcium exchanger protein FFE93_002380 PF00005 ABC transporter FFE93_002385 PF02405 Permease MlaE FFE93_002390 PF02470 MlaD protein FFE93_002395 PF05494 MlaC protein FFE93_002400 PF13466 STAS domain FFE93_002405 PF01722 BolA-like protein FFE93_002410 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FFE93_002415 PF13180 PDZ domain FFE93_002420 PF00595 PDZ domain FFE93_002420 PF13180 PDZ domain FFE93_002425 PF06295 Protein of unknown function (DUF1043) FFE93_002430 PF03969 AFG1-like ATPase FFE93_002435 PF00572 Ribosomal protein L13 FFE93_002440 PF00380 Ribosomal protein S9/S16 FFE93_002450 PF00043 Glutathione S-transferase, C-terminal domain FFE93_002450 PF02798 Glutathione S-transferase, N-terminal domain FFE93_002455 PF04386 Stringent starvation protein B FFE93_002470 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFE93_002470 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FFE93_002475 PF01645 Conserved region in glutamate synthase FFE93_002475 PF01493 GXGXG motif FFE93_002475 PF04898 Glutamate synthase central domain FFE93_002475 PF00310 Glutamine amidotransferases class-II FFE93_002480 PF04055 Radical SAM superfamily FFE93_002480 PF16199 Radical_SAM C-terminal domain FFE93_002485 PF00072 Response regulator receiver domain FFE93_002485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_002485 PF18415 Histidine kinase receptor ArcB trans-membrane domain FFE93_002485 PF00512 His Kinase A (phospho-acceptor) domain FFE93_002485 PF00989 PAS fold FFE93_002485 PF01627 Hpt domain FFE93_002500 PF00912 Transglycosylase FFE93_002505 PF04972 BON domain FFE93_002510 PF13580 SIS domain FFE93_002515 PF02021 Uncharacterised protein family UPF0102 FFE93_002520 PF04348 LppC putative lipoprotein FFE93_002525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FFE93_002535 PF13599 Pentapeptide repeats (9 copies) FFE93_002565 PF00107 Zinc-binding dehydrogenase FFE93_002565 PF08240 Alcohol dehydrogenase GroES-like domain FFE93_002570 PF17954 Quercetinase C-terminal cupin domain FFE93_002570 PF02678 Pirin FFE93_002575 PF03466 LysR substrate binding domain FFE93_002575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_002580 PF13409 Glutathione S-transferase, N-terminal domain FFE93_002585 PF07681 DoxX FFE93_002590 PF13997 YqjK-like protein FFE93_002595 PF07332 Putative Actinobacterial Holin-X, holin superfamily III FFE93_002600 PF05957 Bacterial protein of unknown function (DUF883) FFE93_002610 PF13721 SecD export protein N-terminal TM region FFE93_002615 PF09335 SNARE associated Golgi protein FFE93_002625 PF07729 FCD domain FFE93_002625 PF00392 Bacterial regulatory proteins, gntR family FFE93_002630 PF07690 Major Facilitator Superfamily FFE93_002635 PF02614 Glucuronate isomerase FFE93_002640 PF08125 Mannitol dehydrogenase C-terminal domain FFE93_002640 PF01232 Mannitol dehydrogenase Rossmann domain FFE93_002645 PF08666 SAF domain FFE93_002645 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus FFE93_002650 PF10688 Bacterial inner membrane protein FFE93_002655 PF00375 Sodium:dicarboxylate symporter family FFE93_002660 PF03741 Integral membrane protein TerC family FFE93_002665 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FFE93_002670 PF01863 Protein of unknown function DUF45 FFE93_002675 PF12951 Passenger-associated-transport-repeat FFE93_002675 PF03797 Autotransporter beta-domain FFE93_002680 PF05175 Methyltransferase small domain FFE93_002685 PF03797 Autotransporter beta-domain FFE93_002690 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFE93_002690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FFE93_002695 PF03729 Short repeat of unknown function (DUF308) FFE93_002730 PF00460 Flagella basal body rod protein FFE93_002735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFE93_002735 PF00460 Flagella basal body rod protein FFE93_002740 PF13860 FlgD Ig-like domain FFE93_002740 PF03963 Flagellar hook capping protein - N-terminal region FFE93_002740 PF13861 FlgD Tudor-like domain FFE93_002745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFE93_002745 PF00460 Flagella basal body rod protein FFE93_002745 PF07559 Flagellar basal body protein FlaE FFE93_002750 PF00460 Flagella basal body rod protein FFE93_002750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFE93_002755 PF00460 Flagella basal body rod protein FFE93_002755 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFE93_002760 PF02107 Flagellar L-ring protein FFE93_002765 PF02119 Flagellar P-ring protein FFE93_002770 PF10135 Rod binding protein FFE93_002770 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FFE93_002775 PF00460 Flagella basal body rod protein FFE93_002775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFE93_002780 PF00669 Bacterial flagellin N-terminal helical region FFE93_002785 PF02203 Tar ligand binding domain homologue FFE93_002785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_002785 PF00672 HAMP domain FFE93_002790 PF04542 Sigma-70 region 2 FFE93_002790 PF04539 Sigma-70 region 3 FFE93_002790 PF04545 Sigma-70, region 4 FFE93_002795 PF05247 Flagellar transcriptional activator (FlhD) FFE93_002800 PF05280 Flagellar transcriptional activator (FlhC) FFE93_002805 PF01618 MotA/TolQ/ExbB proton channel family FFE93_002810 PF13677 Membrane MotB of proton-channel complex MotA/MotB FFE93_002810 PF00691 OmpA family FFE93_002815 PF01627 Hpt domain FFE93_002815 PF02895 Signal transducing histidine kinase, homodimeric domain FFE93_002815 PF09078 CheY binding FFE93_002815 PF01584 CheW-like domain FFE93_002815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_002820 PF01584 CheW-like domain FFE93_002825 PF02203 Tar ligand binding domain homologue FFE93_002825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_002825 PF00672 HAMP domain FFE93_002835 PF00700 Bacterial flagellin C-terminal helical region FFE93_002835 PF00669 Bacterial flagellin N-terminal helical region FFE93_002835 PF08884 Flagellin D3 domain FFE93_002840 PF07196 Flagellin hook IN motif FFE93_002840 PF07195 Flagellar hook-associated protein 2 C-terminus FFE93_002840 PF02465 Flagellar hook-associated protein 2 N-terminus FFE93_002845 PF02561 Flagellar protein FliS FFE93_002850 PF05400 Flagellar protein FliT FFE93_002855 PF06366 Flagellar protein FlhE FFE93_002860 PF00771 FHIPEP family FFE93_002865 PF01312 FlhB HrpN YscU SpaS Family FFE93_002870 PF04344 Chemotaxis phosphatase, CheZ FFE93_002875 PF00072 Response regulator receiver domain FFE93_002880 PF01339 CheB methylesterase FFE93_002880 PF00072 Response regulator receiver domain FFE93_002885 PF03705 CheR methyltransferase, all-alpha domain FFE93_002885 PF01739 CheR methyltransferase, SAM binding domain FFE93_002890 PF02049 Flagellar hook-basal body complex protein FliE FFE93_002895 PF08345 Flagellar M-ring protein C-terminal FFE93_002895 PF01514 Secretory protein of YscJ/FliF family FFE93_002900 PF01706 FliG C-terminal domain FFE93_002900 PF14841 FliG middle domain FFE93_002900 PF14842 FliG N-terminal domain FFE93_002910 PF18269 T3SS EscN ATPase C-terminal domain FFE93_002910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFE93_002915 PF02050 Flagellar FliJ protein FFE93_002920 PF02120 Flagellar hook-length control protein FliK FFE93_002925 PF03748 Flagellar basal body-associated protein FliL FFE93_002930 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FFE93_002930 PF02154 Flagellar motor switch protein FliM FFE93_002935 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FFE93_002935 PF16973 Flagellar motor switch protein FliN N-terminal FFE93_002940 PF04347 Flagellar biosynthesis protein, FliO FFE93_002945 PF00813 FliP family FFE93_002950 PF01313 Bacterial export proteins, family 3 FFE93_002955 PF01311 Bacterial export proteins, family 1 FFE93_002960 PF00196 Bacterial regulatory proteins, luxR family FFE93_002960 PF00072 Response regulator receiver domain FFE93_002965 PF02203 Tar ligand binding domain homologue FFE93_002965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_002965 PF00672 HAMP domain FFE93_002975 PF00140 Sigma-70 factor, region 1.2 FFE93_002975 PF03979 Sigma-70 factor, region 1.1 FFE93_002975 PF04539 Sigma-70 region 3 FFE93_002975 PF04546 Sigma-70, non-essential region FFE93_002975 PF04542 Sigma-70 region 2 FFE93_002975 PF04545 Sigma-70, region 4 FFE93_002980 PF08275 DNA primase catalytic core, N-terminal domain FFE93_002980 PF01807 CHC2 zinc finger FFE93_002980 PF10410 DnaB-helicase binding domain of primase FFE93_002980 PF08278 DNA primase DnaG DnaB-binding FFE93_002985 PF01165 Ribosomal protein S21 FFE93_002990 PF00814 Glycoprotease family FFE93_002995 PF02660 Glycerol-3-phosphate acyltransferase FFE93_003000 PF02152 Dihydroneopterin aldolase FFE93_003005 PF02673 Bacitracin resistance protein BacA FFE93_003010 PF01966 HD domain FFE93_003010 PF12627 Probable RNA and SrmB- binding site of polymerase A FFE93_003010 PF01743 Poly A polymerase head domain FFE93_003015 PF08239 Bacterial SH3 domain FFE93_003020 PF01928 CYTH domain FFE93_003025 PF03710 Glutamate-ammonia ligase adenylyltransferase FFE93_003025 PF08335 GlnD PII-uridylyltransferase FFE93_003030 PF01467 Cytidylyltransferase-like FFE93_003030 PF00294 pfkB family carbohydrate kinase FFE93_003035 PF13520 Amino acid permease FFE93_003040 PF04380 Membrane fusogenic activity FFE93_003045 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FFE93_003050 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FFE93_003055 PF03738 Glutathionylspermidine synthase preATP-grasp FFE93_003060 PF06693 Protein of unknown function (DUF1190) FFE93_003065 PF02321 Outer membrane efflux protein FFE93_003070 PF00293 NUDIX domain FFE93_003075 PF06853 Protein of unknown function (DUF1249) FFE93_003080 PF00149 Calcineurin-like phosphoesterase FFE93_003085 PF05728 Uncharacterised protein family (UPF0227) FFE93_003090 PF01751 Toprim domain FFE93_003090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_003090 PF00986 DNA gyrase B subunit, carboxyl terminus FFE93_003090 PF00204 DNA gyrase B FFE93_003095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_003095 PF03466 LysR substrate binding domain FFE93_003100 PF03992 Antibiotic biosynthesis monooxygenase FFE93_003105 PF02525 Flavodoxin-like fold FFE93_003115 PF03989 DNA gyrase C-terminal domain, beta-propeller FFE93_003115 PF00521 DNA gyrase/topoisomerase IV, subunit A FFE93_003120 PF01553 Acyltransferase FFE93_003125 PF07731 Multicopper oxidase FFE93_003125 PF07732 Multicopper oxidase FFE93_003130 PF08497 Radical SAM N-terminal FFE93_003130 PF11842 Domain of unknown function (DUF3362) FFE93_003130 PF04055 Radical SAM superfamily FFE93_003135 PF00248 Aldo/keto reductase family FFE93_003140 PF00465 Iron-containing alcohol dehydrogenase FFE93_003145 PF12833 Helix-turn-helix domain FFE93_003145 PF06719 AraC-type transcriptional regulator N-terminus FFE93_003150 PF09335 SNARE associated Golgi protein FFE93_003155 PF01053 Cys/Met metabolism PLP-dependent enzyme FFE93_003160 PF01618 MotA/TolQ/ExbB proton channel family FFE93_003165 PF02472 Biopolymer transport protein ExbD/TolR FFE93_003200 PF00437 Type II/IV secretion system protein FFE93_003215 PF00263 Bacterial type II and III secretion system protein FFE93_003215 PF13629 Pilus formation protein N terminal region FFE93_003215 PF04972 BON domain FFE93_003240 PF00873 AcrB/AcrD/AcrF family FFE93_003245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_003245 PF00529 HlyD membrane-fusion protein of T1SS FFE93_003265 PF11806 Domain of unknown function (DUF3327) FFE93_003265 PF00756 Putative esterase FFE93_003270 PF00005 ABC transporter FFE93_003275 PF01032 FecCD transport family FFE93_003280 PF01032 FecCD transport family FFE93_003285 PF01497 Periplasmic binding protein FFE93_003290 PF08281 Sigma-70, region 4 FFE93_003290 PF04542 Sigma-70 region 2 FFE93_003295 PF04773 FecR protein FFE93_003295 PF16220 Domain of unknown function (DUF4880) FFE93_003300 PF07715 TonB-dependent Receptor Plug Domain FFE93_003305 PF00675 Insulinase (Peptidase family M16) FFE93_003305 PF05193 Peptidase M16 inactive domain FFE93_003310 PF00005 ABC transporter FFE93_003310 PF06472 ABC transporter transmembrane region 2 FFE93_003315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_003315 PF02203 Tar ligand binding domain homologue FFE93_003315 PF00672 HAMP domain FFE93_003325 PF00771 FHIPEP family FFE93_003330 PF00691 OmpA family FFE93_003330 PF13677 Membrane MotB of proton-channel complex MotA/MotB FFE93_003335 PF05433 Glycine zipper 2TM domain FFE93_003340 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FFE93_003340 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal FFE93_003345 PF13247 4Fe-4S dicluster domain FFE93_003350 PF03916 Polysulphide reductase, NrfD FFE93_003355 PF00374 Nickel-dependent hydrogenase FFE93_003360 PF01750 Hydrogenase maturation protease FFE93_003365 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE FFE93_003370 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FFE93_003375 PF02492 CobW/HypB/UreG, nucleotide-binding domain FFE93_003380 PF01455 HupF/HypC family FFE93_003385 PF01924 Hydrogenase formation hypA family FFE93_003390 PF00586 AIR synthase related protein, N-terminal domain FFE93_003390 PF02769 AIR synthase related protein, C-terminal domain FFE93_003395 PF00708 Acylphosphatase FFE93_003395 PF17788 HypF Kae1-like domain FFE93_003395 PF01300 Telomere recombination FFE93_003395 PF07503 HypF finger FFE93_003400 PF08448 PAS fold FFE93_003400 PF00990 Diguanylate cyclase, GGDEF domain FFE93_003400 PF00563 EAL domain FFE93_003400 PF08447 PAS fold FFE93_003410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_003410 PF00529 HlyD membrane-fusion protein of T1SS FFE93_003415 PF00873 AcrB/AcrD/AcrF family FFE93_003420 PF00083 Sugar (and other) transporter FFE93_003420 PF08946 Osmosensory transporter coiled coil FFE93_003430 PF02690 Na+/Pi-cotransporter FFE93_003435 PF01156 Inosine-uridine preferring nucleoside hydrolase FFE93_003440 PF00356 Bacterial regulatory proteins, lacI family FFE93_003450 PF01497 Periplasmic binding protein FFE93_003455 PF01032 FecCD transport family FFE93_003460 PF01032 FecCD transport family FFE93_003465 PF00005 ABC transporter FFE93_003470 PF00557 Metallopeptidase family M24 FFE93_003480 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FFE93_003480 PF17287 POTRA domain FFE93_003480 PF08479 POTRA domain, ShlB-type FFE93_003560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_003560 PF00529 HlyD membrane-fusion protein of T1SS FFE93_003565 PF04632 Fusaric acid resistance protein family FFE93_003575 PF00484 Carbonic anhydrase FFE93_003615 PF10431 C-terminal, D2-small domain, of ClpB protein FFE93_003615 PF17871 AAA lid domain FFE93_003615 PF07724 AAA domain (Cdc48 subfamily) FFE93_003615 PF00004 ATPase family associated with various cellular activities (AAA) FFE93_003665 PF00691 OmpA family FFE93_003665 PF13677 Membrane MotB of proton-channel complex MotA/MotB FFE93_003700 PF04717 Type VI secretion system, phage-baseplate injector FFE93_003725 PF03472 Autoinducer binding domain FFE93_003725 PF00196 Bacterial regulatory proteins, luxR family FFE93_003735 PF03466 LysR substrate binding domain FFE93_003735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_003745 PF02369 Bacterial Ig-like domain (group 1) FFE93_003745 PF11924 Inverse autotransporter, beta-domain FFE93_003745 PF09134 Invasin, domain 3 FFE93_003770 PF00230 Major intrinsic protein FFE93_003775 PF00589 Phage integrase family FFE93_003790 PF00419 Fimbrial protein FFE93_003795 PF13953 PapC C-terminal domain FFE93_003795 PF13954 PapC N-terminal domain FFE93_003795 PF00577 Outer membrane usher protein FFE93_003800 PF02753 Pili assembly chaperone PapD, C-terminal domain FFE93_003800 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FFE93_003810 PF00419 Fimbrial protein FFE93_003820 PF00107 Zinc-binding dehydrogenase FFE93_003820 PF08240 Alcohol dehydrogenase GroES-like domain FFE93_003825 PF03466 LysR substrate binding domain FFE93_003825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_003880 PF01276 Orn/Lys/Arg decarboxylase, major domain FFE93_003880 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain FFE93_003880 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain FFE93_003890 PF01464 Transglycosylase SLT domain FFE93_003890 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain FFE93_003895 PF04362 Bacterial Fe(2+) trafficking FFE93_003900 PF10576 Iron-sulfur binding domain of endonuclease III FFE93_003900 PF00633 Helix-hairpin-helix motif FFE93_003900 PF14815 NUDIX domain FFE93_003900 PF00730 HhH-GPD superfamily base excision DNA repair protein FFE93_003905 PF02390 Putative methyltransferase FFE93_003910 PF04320 Protein with unknown function (DUF469) FFE93_003920 PF04606 Ogr/Delta-like zinc finger FFE93_003965 PF02796 Helix-turn-helix domain of resolvase FFE93_003965 PF00239 Resolvase, N terminal domain FFE93_003970 PF02413 Caudovirales tail fibre assembly protein, lambda gpK FFE93_004005 PF18543 Intracellular delivery domain FFE93_004005 PF02661 Fic/DOC family FFE93_004100 PF02086 D12 class N6 adenine-specific DNA methyltransferase FFE93_004140 PF02899 Phage integrase, N-terminal SAM-like domain FFE93_004140 PF00589 Phage integrase family FFE93_004145 PF04960 Glutaminase FFE93_004150 PF11101 Protein of unknown function (DUF2884) FFE93_004155 PF04055 Radical SAM superfamily FFE93_004155 PF06969 HemN C-terminal domain FFE93_004160 PF01725 Ham1 family FFE93_004165 PF02594 Uncharacterised ACR, YggU family COG1872 FFE93_004170 PF02325 YGGT family FFE93_004175 PF14748 Pyrroline-5-carboxylate reductase dimerisation FFE93_004175 PF03807 NADP oxidoreductase coenzyme F420-dependent FFE93_004180 PF01168 Alanine racemase, N-terminal domain FFE93_004185 PF00437 Type II/IV secretion system protein FFE93_004190 PF04371 Porphyromonas-type peptidyl-arginine deiminase FFE93_004195 PF00795 Carbon-nitrogen hydrolase FFE93_004200 PF03652 Holliday junction resolvase FFE93_004205 PF02622 Uncharacterized ACR, COG1678 FFE93_004210 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FFE93_004210 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FFE93_004215 PF04452 RNA methyltransferase FFE93_004220 PF04231 Endonuclease I FFE93_004225 PF10263 SprT-like family FFE93_004225 PF17283 SprT-like zinc ribbon domain FFE93_004235 PF02772 S-adenosylmethionine synthetase, central domain FFE93_004235 PF00438 S-adenosylmethionine synthetase, N-terminal domain FFE93_004235 PF02773 S-adenosylmethionine synthetase, C-terminal domain FFE93_004240 PF17944 Arginine decarboxylase C-terminal helical extension FFE93_004240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FFE93_004240 PF17810 Arginine decarboxylase helical bundle domain FFE93_004245 PF00355 Rieske [2Fe-2S] domain FFE93_004250 PF01435 Peptidase family M48 FFE93_004255 PF02780 Transketolase, C-terminal domain FFE93_004255 PF00456 Transketolase, thiamine diphosphate binding domain FFE93_004255 PF02779 Transketolase, pyrimidine binding domain FFE93_004265 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FFE93_004265 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FFE93_004270 PF00162 Phosphoglycerate kinase FFE93_004275 PF01116 Fructose-bisphosphate aldolase class-II FFE93_004280 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FFE93_004285 PF00924 Mechanosensitive ion channel FFE93_004285 PF05552 Conserved TM helix FFE93_004290 PF01810 LysE type translocator FFE93_004295 PF04402 Protein of unknown function (DUF541) FFE93_004300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_004300 PF03466 LysR substrate binding domain FFE93_004305 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FFE93_004310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FFE93_004310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FFE93_004310 PF01842 ACT domain FFE93_004315 PF01812 5-formyltetrahydrofolate cyclo-ligase family FFE93_004325 PF05164 Cell division protein ZapA FFE93_004330 PF03695 Uncharacterised protein family (UPF0149) FFE93_004335 PF05195 Aminopeptidase P, N-terminal domain FFE93_004335 PF00557 Metallopeptidase family M24 FFE93_004340 PF01494 FAD binding domain FFE93_004345 PF01494 FAD binding domain FFE93_004350 PF08669 Glycine cleavage T-protein C-terminal barrel domain FFE93_004350 PF01571 Aminomethyltransferase folate-binding domain FFE93_004355 PF01597 Glycine cleavage H-protein FFE93_004360 PF02347 Glycine cleavage system P-protein FFE93_004365 PF03006 Haemolysin-III related FFE93_004370 PF01571 Aminomethyltransferase folate-binding domain FFE93_004375 PF03937 Flavinator of succinate dehydrogenase FFE93_004380 PF07254 Membrane-bound toxin component of toxin-antitoxin system FFE93_004385 PF00072 Response regulator receiver domain FFE93_004385 PF00486 Transcriptional regulatory protein, C terminal FFE93_004390 PF00512 His Kinase A (phospho-acceptor) domain FFE93_004390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_004390 PF00672 HAMP domain FFE93_004395 PF06123 Inner membrane protein CreD FFE93_004400 PF00258 Flavodoxin FFE93_004405 PF02899 Phage integrase, N-terminal SAM-like domain FFE93_004405 PF00589 Phage integrase family FFE93_004410 PF13098 Thioredoxin-like domain FFE93_004410 PF10411 Disulfide bond isomerase protein N-terminus FFE93_004415 PF02272 DHHA1 domain FFE93_004415 PF17768 RecJ OB domain FFE93_004415 PF01368 DHH family FFE93_004425 PF00152 tRNA synthetases class II (D, K and N) FFE93_004425 PF01336 OB-fold nucleic acid binding domain FFE93_004440 PF01061 ABC-2 type transporter FFE93_004445 PF00005 ABC transporter FFE93_004450 PF17101 Stealth protein CR1, conserved region 1 FFE93_004450 PF11380 Stealth protein CR2, conserved region 2 FFE93_004455 PF00535 Glycosyl transferase family 2 FFE93_004455 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase FFE93_004460 PF05159 Capsule polysaccharide biosynthesis protein FFE93_004465 PF05159 Capsule polysaccharide biosynthesis protein FFE93_004470 PF10531 SLBB domain FFE93_004470 PF02563 Polysaccharide biosynthesis/export protein FFE93_004480 PF08448 PAS fold FFE93_004480 PF00990 Diguanylate cyclase, GGDEF domain FFE93_004485 PF01037 Lrp/AsnC ligand binding domain FFE93_004495 PF01055 Glycosyl hydrolases family 31 FFE93_004495 PF17137 Domain of unknown function (DUF5110) FFE93_004495 PF16338 Domain of unknown function (DUF4968) FFE93_004495 PF13802 Galactose mutarotase-like FFE93_004500 PF07690 Major Facilitator Superfamily FFE93_004510 PF01556 DnaJ C terminal domain FFE93_004510 PF00226 DnaJ domain FFE93_004525 PF01638 HxlR-like helix-turn-helix FFE93_004540 PF03958 Bacterial type II/III secretion system short domain FFE93_004540 PF00263 Bacterial type II and III secretion system protein FFE93_004550 PF00482 Type II secretion system (T2SS), protein F FFE93_004555 PF08334 Type II secretion system (T2SS), protein G FFE93_004555 PF07963 Prokaryotic N-terminal methylation motif FFE93_004565 PF07963 Prokaryotic N-terminal methylation motif FFE93_004565 PF11612 Type II secretion system (T2SS), protein J FFE93_004575 PF12693 GspL periplasmic domain FFE93_004575 PF05134 Type II secretion system (T2SS), protein L FFE93_004585 PF01478 Type IV leader peptidase family FFE93_004585 PF06750 Bacterial Peptidase A24 N-terminal domain FFE93_004615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_004615 PF03466 LysR substrate binding domain FFE93_004620 PF07690 Major Facilitator Superfamily FFE93_004625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_004625 PF03466 LysR substrate binding domain FFE93_004630 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FFE93_004630 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FFE93_004635 PF00356 Bacterial regulatory proteins, lacI family FFE93_004640 PF00384 Molybdopterin oxidoreductase FFE93_004640 PF01568 Molydopterin dinucleotide binding domain FFE93_004645 PF00501 AMP-binding enzyme FFE93_004645 PF13193 AMP-binding enzyme C-terminal domain FFE93_004645 PF01553 Acyltransferase FFE93_004650 PF07690 Major Facilitator Superfamily FFE93_004660 PF00248 Aldo/keto reductase family FFE93_004665 PF03741 Integral membrane protein TerC family FFE93_004670 PF02976 DNA mismatch repair enzyme MutH FFE93_004680 PF00293 NUDIX domain FFE93_004685 PF05524 PEP-utilising enzyme, N-terminal FFE93_004685 PF02896 PEP-utilising enzyme, TIM barrel domain FFE93_004685 PF01590 GAF domain FFE93_004685 PF00391 PEP-utilising enzyme, mobile domain FFE93_004690 PF01790 Prolipoprotein diacylglyceryl transferase FFE93_004695 PF00303 Thymidylate synthase FFE93_004700 PF07963 Prokaryotic N-terminal methylation motif FFE93_004700 PF00114 Pilin (bacterial filament) FFE93_004720 PF17946 RecC C-terminal domain FFE93_004725 PF16187 Middle or third domain of peptidase_M16 FFE93_004725 PF00675 Insulinase (Peptidase family M16) FFE93_004725 PF05193 Peptidase M16 inactive domain FFE93_004730 PF13361 UvrD-like helicase C-terminal domain FFE93_004730 PF12705 PD-(D/E)XK nuclease superfamily FFE93_004730 PF00580 UvrD/REP helicase N-terminal domain FFE93_004735 PF13538 UvrD-like helicase C-terminal domain FFE93_004740 PF00583 Acetyltransferase (GNAT) family FFE93_004740 PF00696 Amino acid kinase family FFE93_004745 PF11741 AMIN domain FFE93_004745 PF01520 N-acetylmuramoyl-L-alanine amidase FFE93_004765 PF03562 MltA specific insert domain FFE93_004765 PF06725 3D domain FFE93_004770 PF00899 ThiF family FFE93_004775 PF02657 Fe-S metabolism associated domain FFE93_004780 PF00266 Aminotransferase class-V FFE93_004785 PF06004 Bacterial protein of unknown function (DUF903) FFE93_004790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_004790 PF03466 LysR substrate binding domain FFE93_004795 PF04241 Protein of unknown function (DUF423) FFE93_004800 PF01728 FtsJ-like methyltransferase FFE93_004800 PF18125 RlmM ferredoxin-like domain FFE93_004805 PF01367 5'-3' exonuclease, C-terminal SAM fold FFE93_004805 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FFE93_004810 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases FFE93_004810 PF11892 Domain of unknown function (DUF3412) FFE93_004810 PF03641 Possible lysine decarboxylase FFE93_004815 PF14489 QueF-like protein FFE93_004815 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FFE93_004820 PF07348 Syd protein (SUKH-2) FFE93_004825 PF04287 tRNA pseudouridine synthase C FFE93_004830 PF00849 RNA pseudouridylate synthase FFE93_004835 PF00258 Flavodoxin FFE93_004845 PF11944 Protein of unknown function (DUF3461) FFE93_004850 PF14602 Hexapeptide repeat of succinyl-transferase FFE93_004850 PF00132 Bacterial transferase hexapeptide (six repeats) FFE93_004850 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FFE93_004855 PF01909 Nucleotidyltransferase domain FFE93_004855 PF01842 ACT domain FFE93_004855 PF08335 GlnD PII-uridylyltransferase FFE93_004855 PF01966 HD domain FFE93_004860 PF00557 Metallopeptidase family M24 FFE93_004865 PF00318 Ribosomal protein S2 FFE93_004870 PF00889 Elongation factor TS FFE93_004875 PF00696 Amino acid kinase family FFE93_004880 PF01765 Ribosome recycling factor FFE93_004885 PF13288 DXP reductoisomerase C-terminal domain FFE93_004885 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FFE93_004885 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FFE93_004890 PF01255 Putative undecaprenyl diphosphate synthase FFE93_004900 PF17820 PDZ domain FFE93_004900 PF02163 Peptidase family M50 FFE93_004905 PF01103 Surface antigen FFE93_004905 PF07244 Surface antigen variable number repeat FFE93_004910 PF03938 Outer membrane protein (OmpH-like) FFE93_004915 PF00132 Bacterial transferase hexapeptide (six repeats) FFE93_004915 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FFE93_004920 PF07977 FabA-like domain FFE93_004925 PF00132 Bacterial transferase hexapeptide (six repeats) FFE93_004925 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FFE93_004930 PF02684 Lipid-A-disaccharide synthetase FFE93_004935 PF01351 Ribonuclease HII FFE93_004940 PF02811 PHP domain FFE93_004940 PF01336 OB-fold nucleic acid binding domain FFE93_004940 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FFE93_004940 PF07733 Bacterial DNA polymerase III alpha NTPase domain FFE93_004940 PF14579 Helix-hairpin-helix motif FFE93_004945 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FFE93_004950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FFE93_004955 PF01171 PP-loop family FFE93_004955 PF09179 TilS substrate binding domain FFE93_004955 PF11734 TilS substrate C-terminal domain FFE93_004960 PF00034 Cytochrome c FFE93_004965 PF07073 Modulator of Rho-dependent transcription termination (ROF) FFE93_004970 PF06786 Uncharacterised protein family (UPF0253) FFE93_004975 PF07152 YaeQ protein FFE93_004980 PF00472 RF-1 domain FFE93_004985 PF17185 NlpE C-terminal OB domain FFE93_004985 PF04170 NlpE N-terminal domain FFE93_004990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FFE93_004990 PF04073 Aminoacyl-tRNA editing domain FFE93_004990 PF03129 Anticodon binding domain FFE93_004995 PF18389 TrmO C-terminal domain FFE93_004995 PF01980 tRNA-methyltransferase O FFE93_005000 PF16358 RcsF lipoprotein FFE93_005005 PF03180 NLPA lipoprotein FFE93_005010 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_005015 PF00005 ABC transporter FFE93_005015 PF09383 NIL domain FFE93_005050 PF00248 Aldo/keto reductase family FFE93_005060 PF03372 Endonuclease/Exonuclease/phosphatase family FFE93_005065 PF01476 LysM domain FFE93_005065 PF01464 Transglycosylase SLT domain FFE93_005070 PF16123 Hydroxyacylglutathione hydrolase C-terminus FFE93_005070 PF00753 Metallo-beta-lactamase superfamily FFE93_005075 PF08241 Methyltransferase domain FFE93_005080 PF00075 RNase H FFE93_005085 PF00929 Exonuclease FFE93_005095 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FFE93_005100 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_005105 PF00571 CBS domain FFE93_005105 PF00005 ABC transporter FFE93_005110 PF00268 Ribonucleotide reductase, small chain FFE93_005115 PF02867 Ribonucleotide reductase, barrel domain FFE93_005115 PF08343 Ribonucleotide reductase N-terminal FFE93_005115 PF00317 Ribonucleotide reductase, all-alpha domain FFE93_005120 PF07972 NrdI Flavodoxin like FFE93_005125 PF00462 Glutaredoxin FFE93_005130 PF02627 Carboxymuconolactone decarboxylase family FFE93_005135 PF00392 Bacterial regulatory proteins, gntR family FFE93_005135 PF00155 Aminotransferase class I and II FFE93_005140 PF05957 Bacterial protein of unknown function (DUF883) FFE93_005145 PF06392 Acid shock protein repeat FFE93_005150 PF09400 Protein of unknown function (DUF2002) FFE93_005155 PF06711 Protein of unknown function (DUF1198) FFE93_005165 PF00313 'Cold-shock' DNA-binding domain FFE93_005170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FFE93_005175 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_005180 PF12911 N-terminal TM domain of oligopeptide transport permease C FFE93_005180 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_005185 PF00005 ABC transporter FFE93_005190 PF00005 ABC transporter FFE93_005200 PF00547 Urease, gamma subunit FFE93_005205 PF00699 Urease beta subunit FFE93_005210 PF00449 Urease alpha-subunit, N-terminal domain FFE93_005210 PF01979 Amidohydrolase family FFE93_005215 PF02814 UreE urease accessory protein, N-terminal domain FFE93_005215 PF05194 UreE urease accessory protein, C-terminal domain FFE93_005220 PF01730 UreF FFE93_005225 PF02492 CobW/HypB/UreG, nucleotide-binding domain FFE93_005230 PF01774 UreD urease accessory protein FFE93_005235 PF03253 Urea transporter FFE93_005240 PF03824 High-affinity nickel-transport protein FFE93_005245 PF06411 HdeA/HdeB family FFE93_005250 PF02254 TrkA-N domain FFE93_005250 PF07885 Ion channel FFE93_005255 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FFE93_005260 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FFE93_005265 PF07995 Glucose / Sorbosone dehydrogenase FFE93_005270 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FFE93_005275 PF02378 Phosphotransferase system, EIIC FFE93_005280 PF00232 Glycosyl hydrolase family 1 FFE93_005285 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit FFE93_005290 PF07883 Cupin domain FFE93_005290 PF12833 Helix-turn-helix domain FFE93_005295 PF04794 YdjC-like protein FFE93_005305 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FFE93_005330 PF17345 Family of unknown function (DUF5375) FFE93_005360 PF04606 Ogr/Delta-like zinc finger FFE93_005390 PF13356 Arm DNA-binding domain FFE93_005390 PF00589 Phage integrase family FFE93_005400 PF01668 SmpB protein FFE93_005405 PF03364 Polyketide cyclase / dehydrase and lipid transport FFE93_005410 PF03658 RnfH family Ubiquitin FFE93_005415 PF04355 SmpA / OmlA family FFE93_005420 PF02463 RecF/RecN/SMC N terminal domain FFE93_005425 PF01513 ATP-NAD kinase FFE93_005430 PF01025 GrpE FFE93_005435 PF03167 Uracil DNA glycosylase superfamily FFE93_005440 PF01228 Glycine radical FFE93_005445 PF00271 Helicase conserved C-terminal domain FFE93_005445 PF00270 DEAD/DEAH box helicase FFE93_005450 PF05175 Methyltransferase small domain FFE93_005455 PF00890 FAD binding domain FFE93_005455 PF02910 Fumarate reductase flavoprotein C-term FFE93_005460 PF04542 Sigma-70 region 2 FFE93_005460 PF08281 Sigma-70, region 4 FFE93_005465 PF03872 Anti sigma-E protein RseA, N-terminal domain FFE93_005465 PF03873 Anti sigma-E protein RseA, C-terminal domain FFE93_005470 PF17188 MucB/RseB C-terminal domain FFE93_005470 PF03888 MucB/RseB N-terminal domain FFE93_005485 PF03144 Elongation factor Tu domain 2 FFE93_005485 PF00009 Elongation factor Tu GTP binding domain FFE93_005485 PF06421 GTP-binding protein LepA C-terminus FFE93_005485 PF00679 Elongation factor G C-terminus FFE93_005490 PF10502 Signal peptidase, peptidase S26 FFE93_005495 PF00035 Double-stranded RNA binding motif FFE93_005495 PF14622 Ribonuclease-III-like FFE93_005500 PF07650 KH domain FFE93_005500 PF01926 50S ribosome-binding GTPase FFE93_005505 PF02565 Recombination protein O C terminal FFE93_005505 PF11967 Recombination protein O N terminal FFE93_005510 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FFE93_005515 PF01648 4'-phosphopantetheinyl transferase superfamily FFE93_005520 PF12838 4Fe-4S dicluster domain FFE93_005525 PF01418 Helix-turn-helix domain, rpiR family FFE93_005525 PF01380 SIS domain FFE93_005530 PF01380 SIS domain FFE93_005535 PF02378 Phosphotransferase system, EIIC FFE93_005535 PF00367 phosphotransferase system, EIIB FFE93_005550 PF14437 MafB19-like deaminase FFE93_005555 PF01464 Transglycosylase SLT domain FFE93_005555 PF00497 Bacterial extracellular solute-binding proteins, family 3 FFE93_005560 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FFE93_005560 PF02769 AIR synthase related protein, C-terminal domain FFE93_005560 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FFE93_005570 PF00512 His Kinase A (phospho-acceptor) domain FFE93_005570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_005575 PF13942 YfhG lipoprotein FFE93_005580 PF00158 Sigma-54 interaction domain FFE93_005580 PF00072 Response regulator receiver domain FFE93_005585 PF02540 NAD synthase FFE93_005585 PF00795 Carbon-nitrogen hydrolase FFE93_005590 PF00543 Nitrogen regulatory protein P-II FFE93_005595 PF10797 Protein of unknown function FFE93_005600 PF10941 Protein of unknown function DUF2620 FFE93_005605 PF02126 Phosphotriesterase family FFE93_005610 PF01168 Alanine racemase, N-terminal domain FFE93_005620 PF14503 YhfZ C-terminal domain FFE93_005620 PF14502 Helix-turn-helix domain FFE93_005625 PF00175 Oxidoreductase NAD-binding domain FFE93_005625 PF00042 Globin FFE93_005625 PF00970 Oxidoreductase FAD-binding domain FFE93_005630 PF00464 Serine hydroxymethyltransferase FFE93_005635 PF12832 MFS_1 like family FFE93_005640 PF00874 PRD domain FFE93_005645 PF06226 Protein of unknown function (DUF1007) FFE93_005650 PF03824 High-affinity nickel-transport protein FFE93_005655 PF00459 Inositol monophosphatase family FFE93_005660 PF00588 SpoU rRNA Methylase family FFE93_005665 PF02082 Transcriptional regulator FFE93_005670 PF00266 Aminotransferase class-V FFE93_005675 PF01592 NifU-like N terminal domain FFE93_005680 PF01521 Iron-sulphur cluster biosynthesis FFE93_005685 PF00226 DnaJ domain FFE93_005685 PF07743 HSCB C-terminal oligomerisation domain FFE93_005690 PF00012 Hsp70 protein FFE93_005695 PF00111 2Fe-2S iron-sulfur cluster binding domain FFE93_005700 PF04384 Iron-sulphur cluster assembly FFE93_005705 PF12404 Peptidase FFE93_005705 PF00883 Cytosol aminopeptidase family, catalytic domain FFE93_005710 PF14581 SseB protein C-terminal domain FFE93_005710 PF07179 SseB protein N-terminal domain FFE93_005715 PF16168 Adhesin of bacterial autotransporter system, probable stalk FFE93_005715 PF03797 Autotransporter beta-domain FFE93_005715 PF03212 Pertactin FFE93_005720 PF07678 A-macroglobulin TED domain FFE93_005720 PF01835 MG2 domain FFE93_005720 PF11974 Bacterial alpha-2-macroglobulin MG3 domain FFE93_005720 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain FFE93_005720 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain FFE93_005720 PF07703 Alpha-2-macroglobulin bait region domain FFE93_005720 PF00207 Alpha-2-macroglobulin family FFE93_005720 PF17962 Bacterial macroglobulin domain 6 FFE93_005720 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain FFE93_005725 PF06832 Penicillin-Binding Protein C-terminus Family FFE93_005725 PF00912 Transglycosylase FFE93_005725 PF00905 Penicillin binding protein transpeptidase domain FFE93_005735 PF00334 Nucleoside diphosphate kinase FFE93_005740 PF04055 Radical SAM superfamily FFE93_005750 PF13464 Domain of unknown function (DUF4115) FFE93_005755 PF04551 GcpE protein FFE93_005760 PF13393 Histidyl-tRNA synthetase FFE93_005760 PF03129 Anticodon binding domain FFE93_005765 PF09976 Tetratricopeptide repeat-like domain FFE93_005770 PF13360 PQQ-like domain FFE93_005775 PF01926 50S ribosome-binding GTPase FFE93_005775 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FFE93_005785 PF07191 zinc-ribbons FFE93_005790 PF02601 Exonuclease VII, large subunit FFE93_005790 PF13742 OB-fold nucleic acid binding domain FFE93_005795 PF00478 IMP dehydrogenase / GMP reductase domain FFE93_005795 PF00571 CBS domain FFE93_005800 PF02540 NAD synthase FFE93_005800 PF00958 GMP synthase C terminal domain FFE93_005800 PF00117 Glutamine amidotransferase class-I FFE93_005810 PF08543 Phosphomethylpyrimidine kinase FFE93_005825 PF01380 SIS domain FFE93_005825 PF00571 CBS domain FFE93_005830 PF08220 DeoR-like helix-turn-helix domain FFE93_005830 PF00455 DeoR C terminal sensor domain FFE93_005835 PF06923 Glucitol operon activator protein (GutM) FFE93_005840 PF00106 short chain dehydrogenase FFE93_005845 PF03829 PTS system glucitol/sorbitol-specific IIA component FFE93_005850 PF03612 Sorbitol phosphotransferase enzyme II N-terminus FFE93_005850 PF07663 Sorbitol phosphotransferase enzyme II C-terminus FFE93_005855 PF03608 PTS system enzyme II sorbitol-specific factor FFE93_005860 PF00781 Diacylglycerol kinase catalytic domain FFE93_005870 PF07411 Domain of unknown function (DUF1508) FFE93_005875 PF00072 Response regulator receiver domain FFE93_005875 PF00486 Transcriptional regulatory protein, C terminal FFE93_005880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_005880 PF00512 His Kinase A (phospho-acceptor) domain FFE93_005880 PF00672 HAMP domain FFE93_005885 PF00873 AcrB/AcrD/AcrF family FFE93_005890 PF00873 AcrB/AcrD/AcrF family FFE93_005895 PF13533 Biotin-lipoyl like FFE93_005900 PF00012 Hsp70 protein FFE93_005905 PF00563 EAL domain FFE93_005905 PF00990 Diguanylate cyclase, GGDEF domain FFE93_005905 PF05231 MASE1 FFE93_005905 PF08448 PAS fold FFE93_005905 PF13426 PAS domain FFE93_005905 PF08447 PAS fold FFE93_005910 PF01769 Divalent cation transporter FFE93_005910 PF00571 CBS domain FFE93_005910 PF03448 MgtE intracellular N domain FFE93_005920 PF02541 Ppx/GppA phosphatase family FFE93_005925 PF02503 Polyphosphate kinase middle domain FFE93_005925 PF13090 Polyphosphate kinase C-terminal domain 2 FFE93_005925 PF17941 Polyphosphate kinase C-terminal domain 1 FFE93_005925 PF13089 Polyphosphate kinase N-terminal domain FFE93_005930 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_005935 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_005940 PF00005 ABC transporter FFE93_005955 PF13302 Acetyltransferase (GNAT) domain FFE93_005960 PF00551 Formyl transferase FFE93_005965 PF00586 AIR synthase related protein, N-terminal domain FFE93_005965 PF02769 AIR synthase related protein, C-terminal domain FFE93_005975 PF00860 Permease family FFE93_005980 PF00308 Bacterial dnaA protein FFE93_005985 PF03960 ArsC family FFE93_005990 PF01435 Peptidase family M48 FFE93_005990 PF07720 Tetratricopeptide repeat FFE93_005995 PF01594 AI-2E family transporter FFE93_006000 PF00578 AhpC/TSA family FFE93_006005 PF01842 ACT domain FFE93_006010 PF00701 Dihydrodipicolinate synthetase family FFE93_006015 PF06804 NlpB/DapX lipoprotein FFE93_006020 PF01259 SAICAR synthetase FFE93_006025 PF04228 Putative neutral zinc metallopeptidase FFE93_006030 PF04284 Protein of unknown function (DUF441) FFE93_006035 PF17176 tRNA-binding domain FFE93_006035 PF05127 Helicase FFE93_006035 PF13718 GNAT acetyltransferase 2 FFE93_006040 PF02230 Phospholipase/Carboxylesterase FFE93_006045 PF13980 Uncharacterised protein family (UPF0370) FFE93_006050 PF02557 D-alanyl-D-alanine carboxypeptidase FFE93_006055 PF01546 Peptidase family M20/M25/M40 FFE93_006055 PF07687 Peptidase dimerisation domain FFE93_006060 PF03960 ArsC family FFE93_006075 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_006080 PF00005 ABC transporter FFE93_006080 PF08402 TOBE domain FFE93_006090 PF00873 AcrB/AcrD/AcrF family FFE93_006100 PF00196 Bacterial regulatory proteins, luxR family FFE93_006100 PF00072 Response regulator receiver domain FFE93_006105 PF13187 4Fe-4S dicluster domain FFE93_006105 PF00037 4Fe-4S binding domain FFE93_006105 PF12800 4Fe-4S binding domain FFE93_006110 PF03927 NapD protein FFE93_006115 PF00384 Molybdopterin oxidoreductase FFE93_006115 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FFE93_006115 PF10518 TAT (twin-arginine translocation) pathway signal sequence FFE93_006115 PF01568 Molydopterin dinucleotide binding domain FFE93_006120 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) FFE93_006125 PF03264 NapC/NirT cytochrome c family, N-terminal region FFE93_006135 PF05016 ParE toxin of type II toxin-antitoxin system, parDE FFE93_006140 PF00293 NUDIX domain FFE93_006145 PF03949 Malic enzyme, NAD binding domain FFE93_006145 PF00390 Malic enzyme, N-terminal domain FFE93_006145 PF01515 Phosphate acetyl/butaryl transferase FFE93_006150 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FFE93_006155 PF01218 Coproporphyrinogen III oxidase FFE93_006160 PF00583 Acetyltransferase (GNAT) family FFE93_006170 PF04076 Bacterial OB fold (BOF) protein FFE93_006175 PF06572 Protein of unknown function (DUF1131) FFE93_006180 PF04261 Dyp-type peroxidase family FFE93_006185 PF00701 Dihydrodipicolinate synthetase family FFE93_006190 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase FFE93_006195 PF00480 ROK family FFE93_006200 PF04074 YhcH/YjgK/YiaL FFE93_006205 PF01418 Helix-turn-helix domain, rpiR family FFE93_006205 PF01380 SIS domain FFE93_006210 PF07690 Major Facilitator Superfamily FFE93_006220 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_006225 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_006230 PF00005 ABC transporter FFE93_006235 PF00291 Pyridoxal-phosphate dependent enzyme FFE93_006240 PF12704 MacB-like periplasmic core domain FFE93_006240 PF02687 FtsX-like permease family FFE93_006240 PF00005 ABC transporter FFE93_006245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_006250 PF00072 Response regulator receiver domain FFE93_006250 PF00486 Transcriptional regulatory protein, C terminal FFE93_006255 PF16527 Two-component sensor protein CpxA, periplasmic domain FFE93_006255 PF00672 HAMP domain FFE93_006255 PF00512 His Kinase A (phospho-acceptor) domain FFE93_006255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_006260 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FFE93_006265 PF02896 PEP-utilising enzyme, TIM barrel domain FFE93_006265 PF00391 PEP-utilising enzyme, mobile domain FFE93_006265 PF05524 PEP-utilising enzyme, N-terminal FFE93_006270 PF00381 PTS HPr component phosphorylation site FFE93_006275 PF00291 Pyridoxal-phosphate dependent enzyme FFE93_006315 PF06183 DinI-like family FFE93_006335 PF04354 ZipA, C-terminal FtsZ-binding domain FFE93_006340 PF00533 BRCA1 C Terminus (BRCT) domain FFE93_006340 PF01653 NAD-dependent DNA ligase adenylation domain FFE93_006340 PF03120 NAD-dependent DNA ligase OB-fold domain FFE93_006340 PF12826 Helix-hairpin-helix motif FFE93_006340 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FFE93_006345 PF12843 Putative quorum-sensing-regulated virulence factor FFE93_006375 PF00749 tRNA synthetases class I (E and Q), catalytic domain FFE93_006405 PF07662 Na+ dependent nucleoside transporter C-terminus FFE93_006405 PF07670 Nucleoside recognition FFE93_006405 PF01773 Na+ dependent nucleoside transporter N-terminus FFE93_006410 PF01566 Natural resistance-associated macrophage protein FFE93_006420 PF00248 Aldo/keto reductase family FFE93_006425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_006425 PF03466 LysR substrate binding domain FFE93_006435 PF02685 Glucokinase FFE93_006440 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system FFE93_006450 PF07690 Major Facilitator Superfamily FFE93_006455 PF04397 LytTr DNA-binding domain FFE93_006455 PF00072 Response regulator receiver domain FFE93_006460 PF07694 5TMR of 5TMR-LYT FFE93_006460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_006460 PF06580 Histidine kinase FFE93_006465 PF07350 Protein of unknown function (DUF1479) FFE93_006475 PF00155 Aminotransferase class I and II FFE93_006480 PF01292 Prokaryotic cytochrome b561 FFE93_006495 PF03783 Curli production assembly/transport component CsgG FFE93_006505 PF05643 Putative bacterial lipoprotein (DUF799) FFE93_006515 PF00005 ABC transporter FFE93_006520 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_006530 PF13406 Transglycosylase SLT domain FFE93_006535 PF00324 Amino acid permease FFE93_006540 PF07969 Amidohydrolase family FFE93_006545 PF17932 Tetracyclin repressor-like, C-terminal domain FFE93_006545 PF00440 Bacterial regulatory proteins, tetR family FFE93_006550 PF07690 Major Facilitator Superfamily FFE93_006555 PF02405 Permease MlaE FFE93_006560 PF00005 ABC transporter FFE93_006575 PF01292 Prokaryotic cytochrome b561 FFE93_006580 PF04264 YceI-like domain FFE93_006585 PF00356 Bacterial regulatory proteins, lacI family FFE93_006590 PF00367 phosphotransferase system, EIIB FFE93_006590 PF02378 Phosphotransferase system, EIIC FFE93_006595 PF00232 Glycosyl hydrolase family 1 FFE93_006605 PF03551 Transcriptional regulator PadR-like family FFE93_006610 PF03831 PhnA domain FFE93_006610 PF08274 PhnA Zinc-Ribbon FFE93_006625 PF01226 Formate/nitrite transporter FFE93_006630 PF00005 ABC transporter FFE93_006635 PF03379 CcmB protein FFE93_006640 PF01578 Cytochrome C assembly protein FFE93_006645 PF04995 Heme exporter protein D (CcmD) FFE93_006650 PF03100 CcmE FFE93_006655 PF01578 Cytochrome C assembly protein FFE93_006655 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FFE93_006660 PF08534 Redoxin FFE93_006665 PF03918 Cytochrome C biogenesis protein FFE93_006670 PF03918 Cytochrome C biogenesis protein FFE93_006675 PF04333 MlaA lipoprotein FFE93_006680 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FFE93_006685 PF04175 Protein of unknown function (DUF406) FFE93_006690 PF00108 Thiolase, N-terminal domain FFE93_006690 PF02803 Thiolase, C-terminal domain FFE93_006695 PF00378 Enoyl-CoA hydratase/isomerase FFE93_006695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FFE93_006695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FFE93_006700 PF00300 Histidine phosphatase superfamily (branch 1) FFE93_006710 PF01713 Smr domain FFE93_006715 PF05175 Methyltransferase small domain FFE93_006720 PF01264 Chorismate synthase FFE93_006725 PF03411 Penicillin-insensitive murein endopeptidase FFE93_006730 PF01925 Sulfite exporter TauE/SafE FFE93_006735 PF04315 Elongation factor P hydroxylase FFE93_006740 PF08891 YfcL protein FFE93_006745 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FFE93_006745 PF01266 FAD dependent oxidoreductase FFE93_006750 PF02801 Beta-ketoacyl synthase, C-terminal domain FFE93_006750 PF00109 Beta-ketoacyl synthase, N-terminal domain FFE93_006755 PF00990 Diguanylate cyclase, GGDEF domain FFE93_006755 PF00072 Response regulator receiver domain FFE93_006760 PF01177 Asp/Glu/Hydantoin racemase FFE93_006785 PF00578 AhpC/TSA family FFE93_006790 PF00892 EamA-like transporter family FFE93_006810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FFE93_006810 PF11890 Domain of unknown function (DUF3410) FFE93_006810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FFE93_006815 PF02774 Semialdehyde dehydrogenase, dimerisation domain FFE93_006815 PF01118 Semialdehyde dehydrogenase, NAD binding domain FFE93_006820 PF01416 tRNA pseudouridine synthase FFE93_006825 PF09335 SNARE associated Golgi protein FFE93_006830 PF17848 Acetyl-coA carboxylase zinc finger domain FFE93_006830 PF01039 Carboxyl transferase domain FFE93_006835 PF08245 Mur ligase middle domain FFE93_006835 PF02875 Mur ligase family, glutamate ligase domain FFE93_006840 PF05036 Sporulation related domain FFE93_006845 PF02674 Colicin V production protein FFE93_006850 PF00156 Phosphoribosyl transferase domain FFE93_006855 PF02441 Flavoprotein FFE93_006860 PF00497 Bacterial extracellular solute-binding proteins, family 3 FFE93_006865 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_006870 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_006875 PF00005 ABC transporter FFE93_006885 PF01370 NAD dependent epimerase/dehydratase family FFE93_006885 PF08338 Domain of unknown function (DUF1731) FFE93_006895 PF12850 Calcineurin-like phosphoesterase superfamily domain FFE93_006900 PF00293 NUDIX domain FFE93_006910 PF10282 Lactonase, 7-bladed beta-propeller FFE93_006915 PF00202 Aminotransferase class-III FFE93_006920 PF04055 Radical SAM superfamily FFE93_006920 PF06968 Biotin and Thiamin Synthesis associated domain FFE93_006925 PF00155 Aminotransferase class I and II FFE93_006930 PF08241 Methyltransferase domain FFE93_006940 PF00005 ABC transporter FFE93_006945 PF17757 UvrB interaction domain FFE93_006945 PF12344 Ultra-violet resistance protein B FFE93_006945 PF02151 UvrB/uvrC motif FFE93_006945 PF04851 Type III restriction enzyme, res subunit FFE93_006945 PF00271 Helicase conserved C-terminal domain FFE93_006950 PF09905 DNA-binding protein VF530 FFE93_006955 PF01933 Uncharacterised protein family UPF0052 FFE93_006960 PF04055 Radical SAM superfamily FFE93_006960 PF06463 Molybdenum Cofactor Synthesis C FFE93_006965 PF01967 MoaC family FFE93_006970 PF02597 ThiS family FFE93_006975 PF02391 MoaE protein FFE93_006980 PF01027 Inhibitor of apoptosis-promoting Bax1 FFE93_006995 PF00005 ABC transporter FFE93_007000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_007005 PF09209 Tetracyclin repressor-like, C-terminal domain FFE93_007005 PF00440 Bacterial regulatory proteins, tetR family FFE93_007010 PF00271 Helicase conserved C-terminal domain FFE93_007010 PF00270 DEAD/DEAH box helicase FFE93_007015 PF01207 Dihydrouridine synthase (Dus) FFE93_007030 PF00768 D-alanyl-D-alanine carboxypeptidase FFE93_007035 PF01565 FAD binding domain FFE93_007035 PF09330 D-lactate dehydrogenase, membrane binding FFE93_007040 PF01928 CYTH domain FFE93_007045 PF01844 HNH endonuclease FFE93_007055 PF04226 Transglycosylase associated protein FFE93_007060 PF00005 ABC transporter FFE93_007070 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_007075 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_007080 PF07308 Protein of unknown function (DUF1456) FFE93_007090 PF02653 Branched-chain amino acid transport system / permease component FFE93_007095 PF02653 Branched-chain amino acid transport system / permease component FFE93_007100 PF00005 ABC transporter FFE93_007105 PF00005 ABC transporter FFE93_007110 PF00581 Rhodanese-like domain FFE93_007170 PF04381 Putative exonuclease, RdgC FFE93_007180 PF10502 Signal peptidase, peptidase S26 FFE93_007200 PF03354 Phage Terminase FFE93_007205 PF05869 DNA N-6-adenine-methyltransferase (Dam) FFE93_007215 PF09669 Phage regulatory protein Rha (Phage_pRha) FFE93_007215 PF03374 Phage antirepressor protein KilAC domain FFE93_007220 PF06147 Protein of unknown function (DUF968) FFE93_007230 PF01555 DNA methylase FFE93_007240 PF00959 Phage lysozyme FFE93_007265 PF03354 Phage Terminase FFE93_007275 PF04860 Phage portal protein FFE93_007320 PF17482 Phage tail sheath C-terminal domain FFE93_007320 PF04984 Phage tail sheath protein subtilisin-like domain FFE93_007370 PF04865 Baseplate J-like protein FFE93_007375 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) FFE93_007400 PF11893 Domain of unknown function (DUF3413) FFE93_007400 PF00884 Sulfatase FFE93_007405 PF07208 Protein of unknown function (DUF1414) FFE93_007410 PF04245 37-kD nucleoid-associated bacterial protein FFE93_007415 PF01386 Ribosomal L25p family FFE93_007420 PF00271 Helicase conserved C-terminal domain FFE93_007420 PF04851 Type III restriction enzyme, res subunit FFE93_007425 PF01479 S4 domain FFE93_007425 PF00849 RNA pseudouridylate synthase FFE93_007430 PF07690 Major Facilitator Superfamily FFE93_007435 PF13989 YejG-like protein FFE93_007440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FFE93_007440 PF00005 ABC transporter FFE93_007445 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_007445 PF12911 N-terminal TM domain of oligopeptide transport permease C FFE93_007450 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_007455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FFE93_007460 PF12792 CSS motif domain associated with EAL FFE93_007460 PF00563 EAL domain FFE93_007465 PF00877 NlpC/P60 family FFE93_007470 PF01569 PAP2 superfamily FFE93_007475 PF02492 CobW/HypB/UreG, nucleotide-binding domain FFE93_007475 PF07683 Cobalamin synthesis protein cobW C-terminal domain FFE93_007485 PF07729 FCD domain FFE93_007485 PF00392 Bacterial regulatory proteins, gntR family FFE93_007490 PF08125 Mannitol dehydrogenase C-terminal domain FFE93_007490 PF01232 Mannitol dehydrogenase Rossmann domain FFE93_007500 PF03786 D-mannonate dehydratase (UxuA) FFE93_007505 PF08207 Elongation factor P (EF-P) KOW-like domain FFE93_007505 PF09285 Elongation factor P, C-terminal FFE93_007505 PF01132 Elongation factor P (EF-P) OB domain FFE93_007510 PF03222 Tryptophan/tyrosine permease family FFE93_007515 PF03692 Putative zinc- or iron-chelating domain FFE93_007520 PF18364 Molybdopterin oxidoreductase N-terminal domain FFE93_007520 PF01568 Molydopterin dinucleotide binding domain FFE93_007520 PF00384 Molybdopterin oxidoreductase FFE93_007525 PF03264 NapC/NirT cytochrome c family, N-terminal region FFE93_007530 PF00293 NUDIX domain FFE93_007530 PF13344 Haloacid dehalogenase-like hydrolase FFE93_007535 PF00381 PTS HPr component phosphorylation site FFE93_007535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FFE93_007540 PF00294 pfkB family carbohydrate kinase FFE93_007545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FFE93_007545 PF02378 Phosphotransferase system, EIIC FFE93_007550 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FFE93_007555 PF01261 Xylose isomerase-like TIM barrel FFE93_007560 PF03601 Conserved hypothetical protein 698 FFE93_007570 PF03466 LysR substrate binding domain FFE93_007570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_007575 PF00324 Amino acid permease FFE93_007590 PF07715 TonB-dependent Receptor Plug Domain FFE93_007590 PF00593 TonB dependent receptor FFE93_007595 PF13417 Glutathione S-transferase, N-terminal domain FFE93_007595 PF00043 Glutathione S-transferase, C-terminal domain FFE93_007610 PF03180 NLPA lipoprotein FFE93_007615 PF09383 NIL domain FFE93_007615 PF00005 ABC transporter FFE93_007620 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_007635 PF01053 Cys/Met metabolism PLP-dependent enzyme FFE93_007640 PF00571 CBS domain FFE93_007640 PF00291 Pyridoxal-phosphate dependent enzyme FFE93_007645 PF00768 D-alanyl-D-alanine carboxypeptidase FFE93_007645 PF07943 Penicillin-binding protein 5, C-terminal domain FFE93_007650 PF03315 Serine dehydratase beta chain FFE93_007650 PF03313 Serine dehydratase alpha chain FFE93_007660 PF00455 DeoR C terminal sensor domain FFE93_007660 PF08220 DeoR-like helix-turn-helix domain FFE93_007665 PF01791 DeoC/LacD family aldolase FFE93_007670 PF01569 PAP2 superfamily FFE93_007685 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FFE93_007685 PF01610 Transposase FFE93_007685 PF13542 Helix-turn-helix domain of transposase family ISL3 FFE93_007695 PF16452 Bacteriophage CI repressor C-terminal domain FFE93_007695 PF07022 Bacteriophage CI repressor helix-turn-helix domain FFE93_007725 PF05840 Bacteriophage replication gene A protein (GPA) FFE93_007735 PF04754 Putative transposase, YhgA-like FFE93_007775 PF06826 Predicted Permease Membrane Region FFE93_007775 PF02080 TrkA-C domain FFE93_007780 PF00462 Glutaredoxin FFE93_007785 PF07214 Protein of unknown function (DUF1418) FFE93_007795 PF10722 Putative bacterial sensory transduction regulator FFE93_007800 PF13416 Bacterial extracellular solute-binding protein FFE93_007805 PF00005 ABC transporter FFE93_007805 PF08402 TOBE domain FFE93_007810 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_007815 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_007820 PF10767 Protein of unknown function (DUF2593) FFE93_007825 PF05958 tRNA (Uracil-5-)-methyltransferase FFE93_007830 PF00497 Bacterial extracellular solute-binding proteins, family 3 FFE93_007835 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_007840 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_007845 PF00497 Bacterial extracellular solute-binding proteins, family 3 FFE93_007850 PF00005 ABC transporter FFE93_007855 PF01817 Chorismate mutase type II FFE93_007860 PF12883 Protein of unknown function (DUF3828) FFE93_007865 PF01370 NAD dependent epimerase/dehydratase family FFE93_007870 PF11066 Protein of unknown function (DUF2867) FFE93_007870 PF13460 NAD(P)H-binding FFE93_007875 PF01212 Beta-eliminating lyase FFE93_007880 PF04072 Leucine carboxyl methyltransferase FFE93_007885 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FFE93_007885 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FFE93_007885 PF00205 Thiamine pyrophosphate enzyme, central domain FFE93_007890 PF00111 2Fe-2S iron-sulfur cluster binding domain FFE93_007890 PF00970 Oxidoreductase FAD-binding domain FFE93_007890 PF00175 Oxidoreductase NAD-binding domain FFE93_007895 PF03063 Prismane/CO dehydrogenase family FFE93_007900 PF03956 Lysine exporter LysO FFE93_007905 PF11398 Protein of unknown function (DUF2813) FFE93_007910 PF04393 Protein of unknown function (DUF535) FFE93_007915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_007920 PF02687 FtsX-like permease family FFE93_007920 PF12704 MacB-like periplasmic core domain FFE93_007920 PF00005 ABC transporter FFE93_007925 PF00313 'Cold-shock' DNA-binding domain FFE93_007930 PF02617 ATP-dependent Clp protease adaptor protein ClpS FFE93_007935 PF00004 ATPase family associated with various cellular activities (AAA) FFE93_007935 PF17871 AAA lid domain FFE93_007935 PF10431 C-terminal, D2-small domain, of ClpB protein FFE93_007935 PF07724 AAA domain (Cdc48 subfamily) FFE93_007935 PF02861 Clp amino terminal domain, pathogenicity island component FFE93_007940 PF01176 Translation initiation factor 1A / IF-1 FFE93_007945 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FFE93_007950 PF00005 ABC transporter FFE93_007950 PF00664 ABC transporter transmembrane region FFE93_007955 PF00005 ABC transporter FFE93_007955 PF00664 ABC transporter transmembrane region FFE93_007960 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFE93_007965 PF01037 Lrp/AsnC ligand binding domain FFE93_007970 PF17854 FtsK alpha domain FFE93_007970 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FFE93_007970 PF09397 Ftsk gamma domain FFE93_007970 PF01580 FtsK/SpoIIIE family FFE93_007975 PF03548 Outer membrane lipoprotein carrier protein LolA FFE93_007980 PF00004 ATPase family associated with various cellular activities (AAA) FFE93_007980 PF16193 AAA C-terminal domain FFE93_007980 PF12002 MgsA AAA+ ATPase C terminal FFE93_007985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FFE93_007985 PF02403 Seryl-tRNA synthetase N-terminal domain FFE93_007990 PF07690 Major Facilitator Superfamily FFE93_007995 PF04055 Radical SAM superfamily FFE93_008000 PF01228 Glycine radical FFE93_008000 PF02901 Pyruvate formate lyase-like FFE93_008005 PF01226 Formate/nitrite transporter FFE93_008010 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding FFE93_008010 PF18381 YcaO cyclodehydratase C-terminal domain FFE93_008015 PF17763 Glutaminase/Asparaginase C-terminal domain FFE93_008015 PF00710 Asparaginase, N-terminal FFE93_008020 PF00266 Aminotransferase class-V FFE93_008025 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FFE93_008030 PF02224 Cytidylate kinase FFE93_008035 PF00575 S1 RNA binding domain FFE93_008040 PF00216 Bacterial DNA-binding protein FFE93_008045 PF03772 Competence protein FFE93_008045 PF00753 Metallo-beta-lactamase superfamily FFE93_008050 PF00005 ABC transporter FFE93_008050 PF00664 ABC transporter transmembrane region FFE93_008055 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FFE93_008060 PF07063 Domain of unknown function (DUF1338) FFE93_008070 PF00313 'Cold-shock' DNA-binding domain FFE93_008075 PF03966 Trm112p-like protein FFE93_008080 PF02348 Cytidylyltransferase FFE93_008085 PF01636 Phosphotransferase enzyme family FFE93_008090 PF02698 DUF218 domain FFE93_008100 PF03882 MukF winged-helix domain FFE93_008100 PF17192 MukF middle domain FFE93_008100 PF17193 MukF C-terminal domain FFE93_008105 PF04288 MukE-like family FFE93_008110 PF16330 MukB hinge domain FFE93_008110 PF04310 MukB N-terminal FFE93_008115 PF03734 L,D-transpeptidase catalytic domain FFE93_008115 PF01471 Putative peptidoglycan binding domain FFE93_008120 PF05951 Bacterial protein of unknown function (DUF882) FFE93_008125 PF00753 Metallo-beta-lactamase superfamily FFE93_008130 PF12792 CSS motif domain associated with EAL FFE93_008130 PF00563 EAL domain FFE93_008135 PF00155 Aminotransferase class I and II FFE93_008140 PF00267 Gram-negative porin FFE93_008145 PF01336 OB-fold nucleic acid binding domain FFE93_008145 PF00152 tRNA synthetases class II (D, K and N) FFE93_008150 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FFE93_008150 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FFE93_008155 PF01433 Peptidase family M1 domain FFE93_008155 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FFE93_008155 PF11940 Domain of unknown function (DUF3458) Ig-like fold FFE93_008160 PF01180 Dihydroorotate dehydrogenase FFE93_008165 PF07126 Cell-division protein ZapC FFE93_008170 PF03476 MOSC N-terminal beta barrel domain FFE93_008170 PF03473 MOSC domain FFE93_008170 PF00111 2Fe-2S iron-sulfur cluster binding domain FFE93_008175 PF02926 THUMP domain FFE93_008175 PF01170 Putative RNA methylase family UPF0020 FFE93_008175 PF10672 S-adenosylmethionine-dependent methyltransferase FFE93_008180 PF00005 ABC transporter FFE93_008180 PF16326 ABC transporter C-terminal domain FFE93_008180 PF12848 ABC transporter FFE93_008185 PF04403 Paraquat-inducible protein A FFE93_008190 PF02470 MlaD protein FFE93_008195 PF03886 ABC-type transport auxiliary lipoprotein component FFE93_008200 PF04957 Ribosome modulation factor FFE93_008205 PF02801 Beta-ketoacyl synthase, C-terminal domain FFE93_008205 PF00109 Beta-ketoacyl synthase, N-terminal domain FFE93_008215 PF07977 FabA-like domain FFE93_008220 PF05362 Lon protease (S16) C-terminal proteolytic domain FFE93_008220 PF13654 AAA domain FFE93_008225 PF06303 MatP N-terminal domain FFE93_008225 PF17414 MatP C-terminal ribbon-helix-helix domain FFE93_008230 PF00691 OmpA family FFE93_008230 PF01389 OmpA-like transmembrane domain FFE93_008235 PF03846 Cell division inhibitor SulA FFE93_008240 PF04993 TfoX N-terminal domain FFE93_008240 PF04994 TfoX C-terminal domain FFE93_008245 PF12805 FUSC-like inner membrane protein yccS FFE93_008250 PF03733 Inner membrane component domain FFE93_008255 PF12462 DNA helicase IV / RNA helicase N terminal FFE93_008255 PF13361 UvrD-like helicase C-terminal domain FFE93_008255 PF00580 UvrD/REP helicase N-terminal domain FFE93_008260 PF02142 MGS-like domain FFE93_008265 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FFE93_008270 PF13380 CoA binding domain FFE93_008275 PF08755 Hemimethylated DNA-binding protein YccV like FFE93_008280 PF10672 S-adenosylmethionine-dependent methyltransferase FFE93_008280 PF17785 PUA-like domain FFE93_008285 PF00708 Acylphosphatase FFE93_008290 PF04358 DsrC like protein FFE93_008315 PF00535 Glycosyl transferase family 2 FFE93_008330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FFE93_008330 PF00205 Thiamine pyrophosphate enzyme, central domain FFE93_008330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FFE93_008335 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FFE93_008340 PF16363 GDP-mannose 4,6 dehydratase FFE93_008345 PF00483 Nucleotidyl transferase FFE93_008350 PF00970 Oxidoreductase FAD-binding domain FFE93_008350 PF00111 2Fe-2S iron-sulfur cluster binding domain FFE93_008350 PF00175 Oxidoreductase NAD-binding domain FFE93_008385 PF02335 Cytochrome c552 FFE93_008390 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) FFE93_008390 PF13435 Cytochrome c554 and c-prime FFE93_008395 PF13247 4Fe-4S dicluster domain FFE93_008395 PF00037 4Fe-4S binding domain FFE93_008400 PF03916 Polysulphide reductase, NrfD FFE93_008405 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FFE93_008405 PF01578 Cytochrome C assembly protein FFE93_008410 PF08534 Redoxin FFE93_008415 PF03918 Cytochrome C biogenesis protein FFE93_008425 PF03472 Autoinducer binding domain FFE93_008425 PF00196 Bacterial regulatory proteins, luxR family FFE93_008430 PF00765 Autoinducer synthase FFE93_008440 PF00999 Sodium/hydrogen exchanger family FFE93_008440 PF02080 TrkA-C domain FFE93_008440 PF03471 Transporter associated domain FFE93_008450 PF01757 Acyltransferase family FFE93_008455 PF04349 Periplasmic glucan biosynthesis protein, MdoG FFE93_008460 PF00535 Glycosyl transferase family 2 FFE93_008465 PF07119 Protein of unknown function (DUF1375) FFE93_008475 PF00854 POT family FFE93_008480 PF07681 DoxX FFE93_008485 PF03279 Bacterial lipid A biosynthesis acyltransferase FFE93_008490 PF00072 Response regulator receiver domain FFE93_008490 PF00196 Bacterial regulatory proteins, luxR family FFE93_008495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_008495 PF00512 His Kinase A (phospho-acceptor) domain FFE93_008500 PF13247 4Fe-4S dicluster domain FFE93_008505 PF03916 Polysulphide reductase, NrfD FFE93_008510 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FFE93_008510 PF00384 Molybdopterin oxidoreductase FFE93_008510 PF01568 Molydopterin dinucleotide binding domain FFE93_008525 PF01594 AI-2E family transporter FFE93_008535 PF00196 Bacterial regulatory proteins, luxR family FFE93_008540 PF01266 FAD dependent oxidoreductase FFE93_008545 PF13991 BssS protein family FFE93_008550 PF06183 DinI-like family FFE93_008555 PF01979 Amidohydrolase family FFE93_008560 PF03992 Antibiotic biosynthesis monooxygenase FFE93_008565 PF12111 Polyribonucleotide phosphorylase C terminal FFE93_008565 PF10150 Ribonuclease E/G family FFE93_008565 PF00575 S1 RNA binding domain FFE93_008570 PF00849 RNA pseudouridylate synthase FFE93_008570 PF01479 S4 domain FFE93_008575 PF02545 Maf-like protein FFE93_008580 PF02620 Large ribosomal RNA subunit accumulation protein YceD FFE93_008585 PF01783 Ribosomal L32p protein family FFE93_008590 PF02504 Fatty acid synthesis protein FFE93_008595 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FFE93_008595 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FFE93_008600 PF00698 Acyl transferase domain FFE93_008610 PF00550 Phosphopantetheine attachment site FFE93_008615 PF02801 Beta-ketoacyl synthase, C-terminal domain FFE93_008615 PF00109 Beta-ketoacyl synthase, N-terminal domain FFE93_008620 PF01063 Amino-transferase class IV FFE93_008625 PF02618 YceG-like family FFE93_008630 PF02223 Thymidylate kinase FFE93_008635 PF09115 DNA polymerase III, delta subunit, C terminal FFE93_008640 PF01026 TatD related DNase FFE93_008645 PF02378 Phosphotransferase system, EIIC FFE93_008645 PF00367 phosphotransferase system, EIIB FFE93_008655 PF00664 ABC transporter transmembrane region FFE93_008655 PF03412 Peptidase C39 family FFE93_008655 PF00005 ABC transporter FFE93_008660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_008660 PF00529 HlyD membrane-fusion protein of T1SS FFE93_008665 PF04055 Radical SAM superfamily FFE93_008665 PF13186 Iron-sulfur cluster-binding domain FFE93_008675 PF08501 Shikimate dehydrogenase substrate binding domain FFE93_008680 PF01230 HIT domain FFE93_008685 PF07233 Protein of unknown function (DUF1425) FFE93_008690 PF08139 Prokaryotic membrane lipoprotein lipid attachment site FFE93_008690 PF13036 Peptidoglycan-synthase activator LpoB FFE93_008695 PF01636 Phosphotransferase enzyme family FFE93_008700 PF00933 Glycosyl hydrolase family 3 N terminal domain FFE93_008705 PF05728 Uncharacterised protein family (UPF0227) FFE93_008710 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFE93_008715 PF05433 Glycine zipper 2TM domain FFE93_008720 PF02559 CarD-like/TRCF domain FFE93_008720 PF17757 UvrB interaction domain FFE93_008720 PF03461 TRCF domain FFE93_008720 PF00271 Helicase conserved C-terminal domain FFE93_008720 PF00270 DEAD/DEAH box helicase FFE93_008725 PF12704 MacB-like periplasmic core domain FFE93_008725 PF02687 FtsX-like permease family FFE93_008730 PF00005 ABC transporter FFE93_008735 PF02687 FtsX-like permease family FFE93_008735 PF12704 MacB-like periplasmic core domain FFE93_008740 PF00480 ROK family FFE93_008745 PF02146 Sir2 family FFE93_008750 PF07687 Peptidase dimerisation domain FFE93_008750 PF01546 Peptidase family M20/M25/M40 FFE93_008760 PF08007 Cupin superfamily protein FFE93_008765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_008765 PF08918 PhoQ Sensor FFE93_008770 PF00072 Response regulator receiver domain FFE93_008770 PF00486 Transcriptional regulatory protein, C terminal FFE93_008775 PF00206 Lyase FFE93_008775 PF08328 Adenylosuccinate lyase C-terminal FFE93_008780 PF04356 Protein of unknown function (DUF489) FFE93_008790 PF00293 NUDIX domain FFE93_008795 PF00849 RNA pseudouridylate synthase FFE93_008800 PF00180 Isocitrate/isopropylmalate dehydrogenase FFE93_008820 PF00324 Amino acid permease FFE93_008825 PF03390 2-hydroxycarboxylate transporter family FFE93_008830 PF00072 Response regulator receiver domain FFE93_008835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_008835 PF00989 PAS fold FFE93_008835 PF17203 Single cache domain 3 FFE93_008835 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain FFE93_008840 PF04960 Glutaminase FFE93_008850 PF00356 Bacterial regulatory proteins, lacI family FFE93_008855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FFE93_008860 PF02378 Phosphotransferase system, EIIC FFE93_008865 PF00232 Glycosyl hydrolase family 1 FFE93_008870 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit FFE93_008880 PF03239 Iron permease FTR1 family FFE93_008885 PF10634 Fe2+ transport protein FFE93_008895 PF12704 MacB-like periplasmic core domain FFE93_008895 PF02687 FtsX-like permease family FFE93_008895 PF00005 ABC transporter FFE93_008905 PF12704 MacB-like periplasmic core domain FFE93_008905 PF02687 FtsX-like permease family FFE93_008905 PF00005 ABC transporter FFE93_008920 PF09313 Domain of unknown function (DUF1971) FFE93_008920 PF03848 Tellurite resistance protein TehB FFE93_008925 PF06276 Ferric iron reductase FhuF-like transporter FFE93_008925 PF11575 FhuF 2Fe-2S C-terminal domain FFE93_008930 PF05195 Aminopeptidase P, N-terminal domain FFE93_008930 PF00557 Metallopeptidase family M24 FFE93_008940 PF14883 Hypothetical glycosyl hydrolase family 13 FFE93_008940 PF01522 Polysaccharide deacetylase FFE93_008945 PF00535 Glycosyl transferase family 2 FFE93_008950 PF13994 PgaD-like protein FFE93_008965 PF02562 PhoH-like protein FFE93_008970 PF01699 Sodium/calcium exchanger protein FFE93_008975 PF04954 Siderophore-interacting protein FFE93_008975 PF08021 Siderophore-interacting FAD-binding domain FFE93_008985 PF03466 LysR substrate binding domain FFE93_008985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_008990 PF00672 HAMP domain FFE93_008990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_008990 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FFE93_008990 PF07730 Histidine kinase FFE93_009000 PF02322 Cytochrome bd terminal oxidase subunit II FFE93_009005 PF01654 Cytochrome bd terminal oxidase subunit I FFE93_009010 PF00392 Bacterial regulatory proteins, gntR family FFE93_009010 PF00155 Aminotransferase class I and II FFE93_009015 PF00202 Aminotransferase class-III FFE93_009020 PF04958 Arginine N-succinyltransferase beta subunit FFE93_009025 PF00171 Aldehyde dehydrogenase family FFE93_009030 PF04996 Succinylarginine dihydrolase FFE93_009035 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FFE93_009040 PF00267 Gram-negative porin FFE93_009050 PF01979 Amidohydrolase family FFE93_009055 PF07702 UTRA domain FFE93_009055 PF00392 Bacterial regulatory proteins, gntR family FFE93_009060 PF01979 Amidohydrolase family FFE93_009065 PF05962 HutD FFE93_009070 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment FFE93_009080 PF01476 LysM domain FFE93_009080 PF01551 Peptidase family M23 FFE93_009085 PF00248 Aldo/keto reductase family FFE93_009090 PF00248 Aldo/keto reductase family FFE93_009110 PF00672 HAMP domain FFE93_009110 PF00512 His Kinase A (phospho-acceptor) domain FFE93_009110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_009115 PF00486 Transcriptional regulatory protein, C terminal FFE93_009115 PF00072 Response regulator receiver domain FFE93_009120 PF12146 Serine aminopeptidase, S33 FFE93_009130 PF01926 50S ribosome-binding GTPase FFE93_009130 PF06071 Protein of unknown function (DUF933) FFE93_009140 PF01195 Peptidyl-tRNA hydrolase FFE93_009145 PF10762 Protein of unknown function (DUF2583) FFE93_009150 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FFE93_009150 PF14572 Phosphoribosyl synthetase-associated domain FFE93_009155 PF08544 GHMP kinases C terminal FFE93_009155 PF00288 GHMP kinases N terminal domain FFE93_009160 PF03550 Outer membrane lipoprotein LolB FFE93_009165 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FFE93_009165 PF01488 Shikimate / quinate 5-dehydrogenase FFE93_009165 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FFE93_009170 PF03462 PCRF domain FFE93_009170 PF00472 RF-1 domain FFE93_009175 PF13847 Methyltransferase domain FFE93_009175 PF17827 PrmC N-terminal domain FFE93_009180 PF04247 Invasion gene expression up-regulator, SirB FFE93_009185 PF13369 Transglutaminase-like superfamily FFE93_009190 PF00793 DAHP synthetase I family FFE93_009195 PF00916 Sulfate permease family FFE93_009195 PF01740 STAS domain FFE93_009200 PF07694 5TMR of 5TMR-LYT FFE93_009200 PF00990 Diguanylate cyclase, GGDEF domain FFE93_009215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FFE93_009220 PF02811 PHP domain FFE93_009225 PF02613 Nitrate reductase delta subunit FFE93_009230 PF07273 Protein of unknown function (DUF1439) FFE93_009235 PF07690 Major Facilitator Superfamily FFE93_009240 PF13302 Acetyltransferase (GNAT) domain FFE93_009245 PF04337 Protein of unknown function, DUF480 FFE93_009250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FFE93_009255 PF03023 Lipid II flippase MurJ FFE93_009260 PF03485 Arginyl tRNA synthetase N terminal domain FFE93_009260 PF05746 DALR anticodon binding domain FFE93_009260 PF00750 tRNA synthetases class I (R) FFE93_009265 PF06185 YecM protein FFE93_009270 PF03932 CutC family FFE93_009280 PF08003 Protein of unknown function (DUF1698) FFE93_009285 PF13649 Methyltransferase domain FFE93_009290 PF01124 MAPEG family FFE93_009295 PF00857 Isochorismatase family FFE93_009305 PF02938 GAD domain FFE93_009305 PF00152 tRNA synthetases class II (D, K and N) FFE93_009305 PF01336 OB-fold nucleic acid binding domain FFE93_009310 PF00293 NUDIX domain FFE93_009315 PF01709 Transcriptional regulator FFE93_009320 PF02075 Crossover junction endodeoxyribonuclease RuvC FFE93_009325 PF01330 RuvA N terminal domain FFE93_009325 PF07499 RuvA, C-terminal domain FFE93_009330 PF17864 RuvB AAA lid domain FFE93_009330 PF05496 Holliday junction DNA helicase RuvB P-loop domain FFE93_009330 PF05491 RuvB C-terminal winged helix domain FFE93_009335 PF00950 ABC 3 transport family FFE93_009340 PF00005 ABC transporter FFE93_009345 PF01297 Zinc-uptake complex component A periplasmic FFE93_009350 PF01476 LysM domain FFE93_009350 PF08525 Opacity-associated protein A N-terminal motif FFE93_009350 PF01551 Peptidase family M23 FFE93_009355 PF03279 Bacterial lipid A biosynthesis acyltransferase FFE93_009360 PF02887 Pyruvate kinase, alpha/beta domain FFE93_009360 PF00224 Pyruvate kinase, barrel domain FFE93_009365 PF01418 Helix-turn-helix domain, rpiR family FFE93_009365 PF01380 SIS domain FFE93_009370 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain FFE93_009370 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain FFE93_009375 PF01081 KDPG and KHG aldolase FFE93_009380 PF00893 Small Multidrug Resistance protein FFE93_009385 PF00893 Small Multidrug Resistance protein FFE93_009390 PF01042 Endoribonuclease L-PSP FFE93_009395 PF13307 Helicase C-terminal domain FFE93_009395 PF04851 Type III restriction enzyme, res subunit FFE93_009400 PF00814 Glycoprotease family FFE93_009405 PF03843 Outer membrane lipoprotein Slp family FFE93_009410 PF00501 AMP-binding enzyme FFE93_009410 PF13193 AMP-binding enzyme C-terminal domain FFE93_009415 PF01612 3'-5' exonuclease FFE93_009415 PF00570 HRDC domain FFE93_009420 PF03776 Septum formation topological specificity factor MinE FFE93_009425 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FFE93_009430 PF03775 Septum formation inhibitor MinC, C-terminal domain FFE93_009430 PF05209 Septum formation inhibitor MinC, N-terminal domain FFE93_009435 PF05166 YcgL domain FFE93_009440 PF01557 Fumarylacetoacetate (FAA) hydrolase family FFE93_009445 PF03692 Putative zinc- or iron-chelating domain FFE93_009455 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FFE93_009455 PF00132 Bacterial transferase hexapeptide (six repeats) FFE93_009460 PF02600 Disulfide bond formation protein DsbB FFE93_009465 PF06450 Bacterial Na+/H+ antiporter B (NhaB) FFE93_009475 PF07840 FadR C-terminal domain FFE93_009475 PF00392 Bacterial regulatory proteins, gntR family FFE93_009480 PF01032 FecCD transport family FFE93_009485 PF00255 Glutathione peroxidase FFE93_009490 PF00005 ABC transporter FFE93_009495 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FFE93_009500 PF00535 Glycosyl transferase family 2 FFE93_009505 PF01370 NAD dependent epimerase/dehydratase family FFE93_009505 PF02911 Formyl transferase, C-terminal domain FFE93_009505 PF00551 Formyl transferase FFE93_009510 PF01522 Polysaccharide deacetylase FFE93_009515 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase FFE93_009520 PF00892 EamA-like transporter family FFE93_009530 PF00877 NlpC/P60 family FFE93_009535 PF03099 Biotin/lipoate A/B protein ligase family FFE93_009535 PF10437 Bacterial lipoate protein ligase C-terminus FFE93_009540 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FFE93_009545 PF07715 TonB-dependent Receptor Plug Domain FFE93_009545 PF00593 TonB dependent receptor FFE93_009550 PF10636 Hemin uptake protein hemP FFE93_009555 PF00793 DAHP synthetase I family FFE93_009560 PF03618 Kinase/pyrophosphorylase FFE93_009570 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FFE93_009570 PF02896 PEP-utilising enzyme, TIM barrel domain FFE93_009570 PF00391 PEP-utilising enzyme, mobile domain FFE93_009580 PF01594 AI-2E family transporter FFE93_009585 PF01565 FAD binding domain FFE93_009585 PF02913 FAD linked oxidases, C-terminal domain FFE93_009585 PF13183 4Fe-4S dicluster domain FFE93_009590 PF03061 Thioesterase superfamily FFE93_009600 PF01521 Iron-sulphur cluster biosynthesis FFE93_009605 PF01458 Uncharacterized protein family (UPF0051) FFE93_009610 PF00005 ABC transporter FFE93_009615 PF01458 Uncharacterized protein family (UPF0051) FFE93_009620 PF00266 Aminotransferase class-V FFE93_009625 PF02657 Fe-S metabolism associated domain FFE93_009630 PF17969 L,D-transpeptidase C-terminal domain FFE93_009630 PF01476 LysM domain FFE93_009630 PF03734 L,D-transpeptidase catalytic domain FFE93_009635 PF04728 Lipoprotein leucine-zipper FFE93_009640 PF02887 Pyruvate kinase, alpha/beta domain FFE93_009640 PF00224 Pyruvate kinase, barrel domain FFE93_009655 PF01554 MatE FFE93_009660 PF00677 Lumazine binding domain FFE93_009670 PF07690 Major Facilitator Superfamily FFE93_009675 PF03466 LysR substrate binding domain FFE93_009675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_009680 PF00356 Bacterial regulatory proteins, lacI family FFE93_009690 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FFE93_009690 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FFE93_009695 PF00877 NlpC/P60 family FFE93_009700 PF00462 Glutaredoxin FFE93_009705 PF00929 Exonuclease FFE93_009710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FFE93_009715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FFE93_009720 PF00440 Bacterial regulatory proteins, tetR family FFE93_009720 PF16925 Tetracyclin repressor-like, C-terminal domain FFE93_009725 PF08019 Phosphoethanolamine transferase EptA/EptB FFE93_009725 PF00884 Sulfatase FFE93_009730 PF06945 Protein of unknown function (DUF1289) FFE93_009735 PF00248 Aldo/keto reductase family FFE93_009750 PF01047 MarR family FFE93_009755 PF05433 Glycine zipper 2TM domain FFE93_009760 PF03702 Anhydro-N-acetylmuramic acid kinase FFE93_009765 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme FFE93_009770 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FFE93_009770 PF01243 Pyridoxamine 5'-phosphate oxidase FFE93_009775 PF00579 tRNA synthetases class I (W and Y) FFE93_009775 PF01479 S4 domain FFE93_009780 PF08543 Phosphomethylpyrimidine kinase FFE93_009785 PF00043 Glutathione S-transferase, C-terminal domain FFE93_009785 PF02798 Glutathione S-transferase, N-terminal domain FFE93_009790 PF11656 YjbD family (DUF3811) FFE93_009795 PF04893 Yip1 domain FFE93_009805 PF00854 POT family FFE93_009820 PF00005 ABC transporter FFE93_009825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FFE93_009825 PF00005 ABC transporter FFE93_009830 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_009830 PF12911 N-terminal TM domain of oligopeptide transport permease C FFE93_009835 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_009840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FFE93_009850 PF02954 Bacterial regulatory protein, Fis family FFE93_009850 PF00158 Sigma-54 interaction domain FFE93_009855 PF04012 PspA/IM30 family FFE93_009860 PF06667 Phage shock protein B FFE93_009865 PF04024 PspC domain FFE93_009875 PF04317 YcjX-like family, DUF463 FFE93_009880 PF05128 Domain of unknown function (DUF697) FFE93_009895 PF18024 Helix-turn-helix domain FFE93_009895 PF00158 Sigma-54 interaction domain FFE93_009900 PF08534 Redoxin FFE93_009905 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FFE93_009905 PF13378 Enolase C-terminal domain-like FFE93_009910 PF00246 Zinc carboxypeptidase FFE93_009915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FFE93_009930 PF01544 CorA-like Mg2+ transporter protein FFE93_009935 PF01171 PP-loop family FFE93_009940 PF00874 PRD domain FFE93_009940 PF03123 CAT RNA binding domain FFE93_009945 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FFE93_009945 PF00367 phosphotransferase system, EIIB FFE93_009945 PF02378 Phosphotransferase system, EIIC FFE93_009950 PF00232 Glycosyl hydrolase family 1 FFE93_009955 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FFE93_009955 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase FFE93_009955 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II FFE93_009955 PF10371 Domain of unknown function FFE93_009955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FFE93_009960 PF00893 Small Multidrug Resistance protein FFE93_009965 PF02308 MgtC family FFE93_009970 PF03891 Domain of unknown function (DUF333) FFE93_009975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FFE93_009975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FFE93_009980 PF11739 Dicarboxylate transport FFE93_009985 PF13617 YnbE-like lipoprotein FFE93_009990 PF07027 Protein of unknown function (DUF1318) FFE93_010010 PF00083 Sugar (and other) transporter FFE93_010015 PF02525 Flavodoxin-like fold FFE93_010020 PF11898 Domain of unknown function (DUF3418) FFE93_010020 PF04408 Helicase associated domain (HA2) FFE93_010020 PF00271 Helicase conserved C-terminal domain FFE93_010020 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FFE93_010020 PF00270 DEAD/DEAH box helicase FFE93_010035 PF00574 Clp protease FFE93_010040 PF00089 Trypsin FFE93_010045 PF02074 Carboxypeptidase Taq (M32) metallopeptidase FFE93_010050 PF00672 HAMP domain FFE93_010050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_010050 PF00512 His Kinase A (phospho-acceptor) domain FFE93_010055 PF00072 Response regulator receiver domain FFE93_010055 PF00486 Transcriptional regulatory protein, C terminal FFE93_010065 PF13520 Amino acid permease FFE93_010070 PF07338 Protein of unknown function (DUF1471) FFE93_010075 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FFE93_010075 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FFE93_010075 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FFE93_010080 PF02233 NAD(P) transhydrogenase beta subunit FFE93_010085 PF00582 Universal stress protein family FFE93_010090 PF00027 Cyclic nucleotide-binding domain FFE93_010090 PF13545 Crp-like helix-turn-helix domain FFE93_010095 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FFE93_010095 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FFE93_010105 PF06445 GyrI-like small molecule binding domain FFE93_010115 PF00245 Alkaline phosphatase FFE93_010135 PF13419 Haloacid dehalogenase-like hydrolase FFE93_010140 PF04960 Glutaminase FFE93_010145 PF13520 Amino acid permease FFE93_010150 PF00282 Pyridoxal-dependent decarboxylase conserved domain FFE93_010155 PF01510 N-acetylmuramoyl-L-alanine amidase FFE93_010175 PF01048 Phosphorylase superfamily FFE93_010175 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus FFE93_010180 PF04754 Putative transposase, YhgA-like FFE93_010190 PF00497 Bacterial extracellular solute-binding proteins, family 3 FFE93_010195 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_010200 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_010205 PF01037 Lrp/AsnC ligand binding domain FFE93_010215 PF02798 Glutathione S-transferase, N-terminal domain FFE93_010235 PF01022 Bacterial regulatory protein, arsR family FFE93_010240 PF02040 Arsenical pump membrane protein FFE93_010250 PF07338 Protein of unknown function (DUF1471) FFE93_010255 PF00106 short chain dehydrogenase FFE93_010260 PF02048 Heat-stable enterotoxin ST FFE93_010280 PF03797 Autotransporter beta-domain FFE93_010285 PF06932 Protein of unknown function (DUF1283) FFE93_010290 PF06649 Protein of unknown function (DUF1161) FFE93_010295 PF00654 Voltage gated chloride channel FFE93_010315 PF00480 ROK family FFE93_010340 PF03466 LysR substrate binding domain FFE93_010340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_010345 PF07690 Major Facilitator Superfamily FFE93_010365 PF07690 Major Facilitator Superfamily FFE93_010375 PF01526 Tn3 transposase DDE domain FFE93_010375 PF13700 Domain of unknown function (DUF4158) FFE93_010380 PF05472 DNA replication terminus site-binding protein (Ter protein) FFE93_010385 PF10415 Fumarase C C-terminus FFE93_010385 PF00206 Lyase FFE93_010390 PF01238 Phosphomannose isomerase type I FFE93_010395 PF06097 Bacterial protein of unknown function (DUF945) FFE93_010405 PF00356 Bacterial regulatory proteins, lacI family FFE93_010405 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FFE93_010410 PF00367 phosphotransferase system, EIIB FFE93_010410 PF02378 Phosphotransferase system, EIIC FFE93_010415 PF00155 Aminotransferase class I and II FFE93_010425 PF00962 Adenosine/AMP deaminase FFE93_010430 PF13593 SBF-like CPA transporter family (DUF4137) FFE93_010435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FFE93_010435 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FFE93_010440 PF02311 AraC-like ligand binding domain FFE93_010440 PF12833 Helix-turn-helix domain FFE93_010445 PF02653 Branched-chain amino acid transport system / permease component FFE93_010450 PF00005 ABC transporter FFE93_010455 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FFE93_010460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FFE93_010465 PF11762 L-arabinose isomerase C-terminal domain FFE93_010465 PF02610 L-arabinose isomerase FFE93_010470 PF00005 ABC transporter FFE93_010470 PF00664 ABC transporter transmembrane region FFE93_010470 PF03412 Peptidase C39 family FFE93_010480 PF00664 ABC transporter transmembrane region FFE93_010480 PF00005 ABC transporter FFE93_010480 PF03412 Peptidase C39 family FFE93_010485 PF01268 Formate--tetrahydrofolate ligase FFE93_010490 PF10754 Protein of unknown function (DUF2569) FFE93_010495 PF02508 Rnf-Nqr subunit, membrane protein FFE93_010500 PF04060 Putative Fe-S cluster FFE93_010505 PF13375 RnfC Barrel sandwich hybrid domain FFE93_010505 PF10531 SLBB domain FFE93_010505 PF13237 4Fe-4S dicluster domain FFE93_010505 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FFE93_010510 PF12833 Helix-turn-helix domain FFE93_010510 PF06445 GyrI-like small molecule binding domain FFE93_010515 PF03116 NQR2, RnfD, RnfE family FFE93_010520 PF04205 FMN-binding domain FFE93_010525 PF02508 Rnf-Nqr subunit, membrane protein FFE93_010530 PF00730 HhH-GPD superfamily base excision DNA repair protein FFE93_010530 PF00633 Helix-hairpin-helix motif FFE93_010530 PF10576 Iron-sulfur binding domain of endonuclease III FFE93_010535 PF00575 S1 RNA binding domain FFE93_010535 PF08206 Ribonuclease B OB domain FFE93_010535 PF00773 RNB domain FFE93_010540 PF13722 5TM C-terminal transporter carbon starvation CstA FFE93_010540 PF02554 Carbon starvation protein CstA FFE93_010545 PF04328 Selenoprotein, putative FFE93_010550 PF00923 Transaldolase/Fructose-6-phosphate aldolase FFE93_010555 PF00455 DeoR C terminal sensor domain FFE93_010555 PF08220 DeoR-like helix-turn-helix domain FFE93_010560 PF00596 Class II Aldolase and Adducin N-terminal domain FFE93_010565 PF05433 Glycine zipper 2TM domain FFE93_010570 PF01253 Translation initiation factor SUI1 FFE93_010575 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FFE93_010580 PF07338 Protein of unknown function (DUF1471) FFE93_010590 PF18073 Rubredoxin metal binding domain FFE93_010595 PF06305 Lipopolysaccharide assembly protein A domain FFE93_010600 PF01569 PAP2 superfamily FFE93_010605 PF00925 GTP cyclohydrolase II FFE93_010610 PF00694 Aconitase C-terminal domain FFE93_010610 PF00330 Aconitase family (aconitate hydratase) FFE93_010625 PF03466 LysR substrate binding domain FFE93_010625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_010630 PF01396 Topoisomerase DNA binding C4 zinc finger FFE93_010630 PF08272 Topoisomerase I zinc-ribbon-like FFE93_010630 PF01751 Toprim domain FFE93_010630 PF01131 DNA topoisomerase FFE93_010640 PF10692 Protein of unknown function (DUF2498) FFE93_010645 PF08496 Peptidase family S49 N-terminal FFE93_010645 PF01343 Peptidase family S49 FFE93_010650 PF00106 short chain dehydrogenase FFE93_010655 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP FFE93_010665 PF00849 RNA pseudouridylate synthase FFE93_010665 PF01479 S4 domain FFE93_010670 PF00072 Response regulator receiver domain FFE93_010670 PF00196 Bacterial regulatory proteins, luxR family FFE93_010675 PF03797 Autotransporter beta-domain FFE93_010680 PF01300 Telomere recombination FFE93_010685 PF02811 PHP domain FFE93_010695 PF00425 chorismate binding enzyme FFE93_010695 PF04715 Anthranilate synthase component I, N terminal region FFE93_010700 PF00117 Glutamine amidotransferase class-I FFE93_010705 PF02885 Glycosyl transferase family, helical bundle domain FFE93_010705 PF00591 Glycosyl transferase family, a/b domain FFE93_010710 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FFE93_010710 PF00218 Indole-3-glycerol phosphate synthase FFE93_010715 PF00291 Pyridoxal-phosphate dependent enzyme FFE93_010720 PF00290 Tryptophan synthase alpha chain FFE93_010730 PF03922 OmpW family FFE93_010750 PF04279 Intracellular septation protein A FFE93_010755 PF03061 Thioesterase superfamily FFE93_010760 PF03544 Gram-negative bacterial TonB protein C-terminal FFE93_010765 PF03795 YCII-related domain FFE93_010780 PF00563 EAL domain FFE93_010790 PF13091 PLD-like domain FFE93_010790 PF13396 Phospholipase_D-nuclease N-terminal FFE93_010795 PF04269 Protein of unknown function, DUF440 FFE93_010800 PF00005 ABC transporter FFE93_010800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FFE93_010805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FFE93_010805 PF00005 ABC transporter FFE93_010810 PF12911 N-terminal TM domain of oligopeptide transport permease C FFE93_010810 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_010815 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_010820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FFE93_010830 PF01914 MarC family integral membrane protein FFE93_010840 PF00465 Iron-containing alcohol dehydrogenase FFE93_010840 PF00171 Aldehyde dehydrogenase family FFE93_010845 PF00265 Thymidine kinase FFE93_010855 PF00816 H-NS histone family FFE93_010860 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FFE93_010860 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FFE93_010860 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FFE93_010865 PF00072 Response regulator receiver domain FFE93_010870 PF01734 Patatin-like phospholipase FFE93_010880 PF02810 SEC-C motif FFE93_010885 PF00551 Formyl transferase FFE93_010885 PF01842 ACT domain FFE93_010925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_010925 PF03466 LysR substrate binding domain FFE93_010930 PF03372 Endonuclease/Exonuclease/phosphatase family FFE93_010935 PF00293 NUDIX domain FFE93_010940 PF07383 Protein of unknown function (DUF1496) FFE93_010945 PF01131 DNA topoisomerase FFE93_010945 PF01751 Toprim domain FFE93_010950 PF00586 AIR synthase related protein, N-terminal domain FFE93_010950 PF02769 AIR synthase related protein, C-terminal domain FFE93_010960 PF00881 Nitroreductase family FFE93_010965 PF01343 Peptidase family S49 FFE93_010970 PF17763 Glutaminase/Asparaginase C-terminal domain FFE93_010970 PF00710 Asparaginase, N-terminal FFE93_010975 PF00857 Isochorismatase family FFE93_010980 PF07023 Protein of unknown function (DUF1315) FFE93_010985 PF01641 SelR domain FFE93_010990 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FFE93_010990 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FFE93_010995 PF01263 Aldose 1-epimerase FFE93_011005 PF06629 MltA-interacting protein MipA FFE93_011015 PF06798 PrkA serine protein kinase C-terminal domain FFE93_011015 PF08298 PrkA AAA domain FFE93_011020 PF04285 Protein of unknown function (DUF444) FFE93_011030 PF03466 LysR substrate binding domain FFE93_011030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_011035 PF05726 Pirin C-terminal cupin domain FFE93_011035 PF02678 Pirin FFE93_011040 PF00990 Diguanylate cyclase, GGDEF domain FFE93_011040 PF00563 EAL domain FFE93_011040 PF13426 PAS domain FFE93_011045 PF07690 Major Facilitator Superfamily FFE93_011050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_011055 PF02687 FtsX-like permease family FFE93_011055 PF00005 ABC transporter FFE93_011055 PF12704 MacB-like periplasmic core domain FFE93_011060 PF02321 Outer membrane efflux protein FFE93_011065 PF01168 Alanine racemase, N-terminal domain FFE93_011065 PF00842 Alanine racemase, C-terminal domain FFE93_011070 PF01266 FAD dependent oxidoreductase FFE93_011075 PF04293 SpoVR like protein FFE93_011085 PF02661 Fic/DOC family FFE93_011140 PF04606 Ogr/Delta-like zinc finger FFE93_011145 PF05154 TM2 domain FFE93_011150 PF00216 Bacterial DNA-binding protein FFE93_011155 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FFE93_011155 PF01588 Putative tRNA binding domain FFE93_011155 PF03147 Ferredoxin-fold anticodon binding domain FFE93_011155 PF03484 tRNA synthetase B5 domain FFE93_011155 PF03483 B3/4 domain FFE93_011160 PF01409 tRNA synthetases class II core domain (F) FFE93_011160 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FFE93_011165 PF00453 Ribosomal protein L20 FFE93_011170 PF01632 Ribosomal protein L35 FFE93_011175 PF05198 Translation initiation factor IF-3, N-terminal domain FFE93_011175 PF00707 Translation initiation factor IF-3, C-terminal domain FFE93_011180 PF03129 Anticodon binding domain FFE93_011180 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FFE93_011180 PF02824 TGS domain FFE93_011180 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FFE93_011185 PF13619 KTSC domain FFE93_011190 PF04474 Protein of unknown function (DUF554) FFE93_011215 PF01914 MarC family integral membrane protein FFE93_011220 PF01464 Transglycosylase SLT domain FFE93_011225 PF01297 Zinc-uptake complex component A periplasmic FFE93_011230 PF00005 ABC transporter FFE93_011235 PF00950 ABC 3 transport family FFE93_011240 PF00950 ABC 3 transport family FFE93_011255 PF14002 YniB-like protein FFE93_011260 PF13419 Haloacid dehalogenase-like hydrolase FFE93_011265 PF07883 Cupin domain FFE93_011275 PF06917 Periplasmic pectate lyase FFE93_011280 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_011285 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_011290 PF00005 ABC transporter FFE93_011290 PF17912 MalK OB fold domain FFE93_011290 PF03459 TOBE domain FFE93_011300 PF06178 Oligogalacturonate-specific porin protein (KdgM) FFE93_011305 PF04307 LexA-binding, inner membrane-associated putative hydrolase FFE93_011315 PF01510 N-acetylmuramoyl-L-alanine amidase FFE93_011320 PF01614 Bacterial transcriptional regulator FFE93_011320 PF09339 IclR helix-turn-helix domain FFE93_011325 PF14583 Oligogalacturonate lyase FFE93_011330 PF07690 Major Facilitator Superfamily FFE93_011335 PF01435 Peptidase family M48 FFE93_011340 PF00595 PDZ domain FFE93_011340 PF03572 Peptidase family S41 FFE93_011340 PF11818 C-terminal domain of tail specific protease (DUF3340) FFE93_011340 PF17804 Tail specific protease N-terminal domain FFE93_011345 PF04352 ProQ/FINO family FFE93_011345 PF17516 ProQ C-terminal domain FFE93_011350 PF13185 GAF domain FFE93_011355 PF04403 Paraquat-inducible protein A FFE93_011360 PF02470 MlaD protein FFE93_011365 PF03466 LysR substrate binding domain FFE93_011365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_011370 PF07690 Major Facilitator Superfamily FFE93_011405 PF01590 GAF domain FFE93_011405 PF00563 EAL domain FFE93_011405 PF00990 Diguanylate cyclase, GGDEF domain FFE93_011405 PF00360 Phytochrome region FFE93_011410 PF07351 Protein of unknown function (DUF1480) FFE93_011425 PF02798 Glutathione S-transferase, N-terminal domain FFE93_011425 PF14834 Glutathione S-transferase, C-terminal domain FFE93_011440 PF00849 RNA pseudouridylate synthase FFE93_011445 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FFE93_011465 PF00106 short chain dehydrogenase FFE93_011495 PF01757 Acyltransferase family FFE93_011500 PF02413 Caudovirales tail fibre assembly protein, lambda gpK FFE93_011505 PF07484 Phage Tail Collar Domain FFE93_011560 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FFE93_011560 PF13542 Helix-turn-helix domain of transposase family ISL3 FFE93_011560 PF01610 Transposase FFE93_011615 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) FFE93_011625 PF06381 Protein of unknown function (DUF1073) FFE93_011635 PF04221 RelB antitoxin FFE93_011640 PF05016 ParE toxin of type II toxin-antitoxin system, parDE FFE93_011660 PF02195 ParB-like nuclease domain FFE93_011670 PF00069 Protein kinase domain FFE93_011670 PF03793 PASTA domain FFE93_011685 PF00959 Phage lysozyme FFE93_011705 PF06530 Phage antitermination protein Q FFE93_011710 PF07102 Protein of unknown function (DUF1364) FFE93_011765 PF01381 Helix-turn-helix FFE93_011805 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain FFE93_011805 PF00589 Phage integrase family FFE93_011810 PF10709 Protein of unknown function (DUF2511) FFE93_011815 PF05425 Copper resistance protein D FFE93_011820 PF04234 CopC domain FFE93_011825 PF00210 Ferritin-like domain FFE93_011830 PF06440 DNA polymerase III, theta subunit FFE93_011835 PF00561 alpha/beta hydrolase fold FFE93_011850 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FFE93_011850 PF00326 Prolyl oligopeptidase family FFE93_011855 PF13995 YebF-like protein FFE93_011865 PF07130 YebG protein FFE93_011870 PF00270 DEAD/DEAH box helicase FFE93_011870 PF03880 DbpA RNA binding domain FFE93_011870 PF00271 Helicase conserved C-terminal domain FFE93_011875 PF02222 ATP-grasp domain FFE93_011880 PF03701 Uncharacterised protein family (UPF0181) FFE93_011885 PF04715 Anthranilate synthase component I, N terminal region FFE93_011885 PF00425 chorismate binding enzyme FFE93_011890 PF00293 NUDIX domain FFE93_011895 PF03315 Serine dehydratase beta chain FFE93_011895 PF03313 Serine dehydratase alpha chain FFE93_011900 PF03741 Integral membrane protein TerC family FFE93_011900 PF03471 Transporter associated domain FFE93_011905 PF03610 PTS system fructose IIA component FFE93_011905 PF03830 PTS system sorbose subfamily IIB component FFE93_011910 PF03609 PTS system sorbose-specific iic component FFE93_011915 PF03613 PTS system mannose/fructose/sorbose family IID component FFE93_011920 PF06173 Protein of unknown function (DUF986) FFE93_011925 PF02659 Putative manganese efflux pump FFE93_011930 PF07715 TonB-dependent Receptor Plug Domain FFE93_011930 PF00593 TonB dependent receptor FFE93_011935 PF13426 PAS domain FFE93_011935 PF08448 PAS fold FFE93_011935 PF08447 PAS fold FFE93_011935 PF05231 MASE1 FFE93_011935 PF00563 EAL domain FFE93_011935 PF00990 Diguanylate cyclase, GGDEF domain FFE93_011945 PF13847 Methyltransferase domain FFE93_011955 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FFE93_011960 PF00313 'Cold-shock' DNA-binding domain FFE93_011965 PF10736 Protein of unknown function (DUF2627) FFE93_011970 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP FFE93_011975 PF00324 Amino acid permease FFE93_011990 PF13974 YebO-like protein FFE93_011995 PF13998 MgrB protein FFE93_012000 PF13996 YobH-like protein FFE93_012005 PF10964 Protein of unknown function (DUF2766) FFE93_012010 PF12833 Helix-turn-helix domain FFE93_012020 PF13520 Amino acid permease FFE93_012030 PF00005 ABC transporter FFE93_012030 PF00664 ABC transporter transmembrane region FFE93_012040 PF03372 Endonuclease/Exonuclease/phosphatase family FFE93_012050 PF00563 EAL domain FFE93_012050 PF00360 Phytochrome region FFE93_012050 PF00990 Diguanylate cyclase, GGDEF domain FFE93_012050 PF01590 GAF domain FFE93_012055 PF06411 HdeA/HdeB family FFE93_012060 PF01638 HxlR-like helix-turn-helix FFE93_012065 PF05368 NmrA-like family FFE93_012070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_012070 PF08447 PAS fold FFE93_012090 PF02899 Phage integrase, N-terminal SAM-like domain FFE93_012090 PF00589 Phage integrase family FFE93_012095 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FFE93_012095 PF13542 Helix-turn-helix domain of transposase family ISL3 FFE93_012095 PF01610 Transposase FFE93_012110 PF06892 Phage regulatory protein CII (CP76) FFE93_012140 PF05840 Bacteriophage replication gene A protein (GPA) FFE93_012310 PF04606 Ogr/Delta-like zinc finger FFE93_012315 PF06183 DinI-like family FFE93_012320 PF06183 DinI-like family FFE93_012355 PF02413 Caudovirales tail fibre assembly protein, lambda gpK FFE93_012405 PF01464 Transglycosylase SLT domain FFE93_012405 PF10145 Phage-related minor tail protein FFE93_012405 PF01551 Peptidase family M23 FFE93_012505 PF00959 Phage lysozyme FFE93_012525 PF07102 Protein of unknown function (DUF1364) FFE93_012555 PF03796 DnaB-like helicase C terminal domain FFE93_012555 PF00772 DnaB-like helicase N terminal domain FFE93_012580 PF01381 Helix-turn-helix FFE93_012580 PF00717 Peptidase S24-like FFE93_012585 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FFE93_012640 PF01066 CDP-alcohol phosphatidyltransferase FFE93_012645 PF08459 UvrC Helix-hairpin-helix N-terminal FFE93_012645 PF02151 UvrB/uvrC motif FFE93_012645 PF01541 GIY-YIG catalytic domain FFE93_012650 PF00196 Bacterial regulatory proteins, luxR family FFE93_012650 PF00072 Response regulator receiver domain FFE93_012655 PF10769 Protein of unknown function (DUF2594) FFE93_012660 PF06942 GlpM protein FFE93_012670 PF00672 HAMP domain FFE93_012670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_012670 PF02203 Tar ligand binding domain homologue FFE93_012675 PF02806 Alpha amylase, C-terminal all-beta domain FFE93_012675 PF00128 Alpha amylase, catalytic domain FFE93_012705 PF00324 Amino acid permease FFE93_012710 PF01344 Kelch motif FFE93_012725 PF00083 Sugar (and other) transporter FFE93_012730 PF03358 NADPH-dependent FMN reductase FFE93_012735 PF04261 Dyp-type peroxidase family FFE93_012740 PF13473 Cupredoxin-like domain FFE93_012740 PF09375 Imelysin FFE93_012745 PF03239 Iron permease FTR1 family FFE93_012750 PF00474 Sodium:solute symporter family FFE93_012755 PF00171 Aldehyde dehydrogenase family FFE93_012755 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FFE93_012755 PF14850 DNA-binding domain of Proline dehydrogenase FFE93_012755 PF01619 Proline dehydrogenase FFE93_012785 PF00291 Pyridoxal-phosphate dependent enzyme FFE93_012790 PF02899 Phage integrase, N-terminal SAM-like domain FFE93_012795 PF04545 Sigma-70, region 4 FFE93_012795 PF04542 Sigma-70 region 2 FFE93_012795 PF04539 Sigma-70 region 3 FFE93_012805 PF00669 Bacterial flagellin N-terminal helical region FFE93_012805 PF00700 Bacterial flagellin C-terminal helical region FFE93_012805 PF08884 Flagellin D3 domain FFE93_012810 PF07196 Flagellin hook IN motif FFE93_012810 PF07195 Flagellar hook-associated protein 2 C-terminus FFE93_012810 PF02465 Flagellar hook-associated protein 2 N-terminus FFE93_012815 PF02561 Flagellar protein FliS FFE93_012820 PF05400 Flagellar protein FliT FFE93_012825 PF12833 Helix-turn-helix domain FFE93_012830 PF01966 HD domain FFE93_012840 PF02049 Flagellar hook-basal body complex protein FliE FFE93_012845 PF01514 Secretory protein of YscJ/FliF family FFE93_012845 PF08345 Flagellar M-ring protein C-terminal FFE93_012850 PF14841 FliG middle domain FFE93_012850 PF01706 FliG C-terminal domain FFE93_012850 PF14842 FliG N-terminal domain FFE93_012855 PF02108 Flagellar assembly protein FliH FFE93_012860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFE93_012860 PF18269 T3SS EscN ATPase C-terminal domain FFE93_012865 PF02050 Flagellar FliJ protein FFE93_012870 PF02120 Flagellar hook-length control protein FliK FFE93_012875 PF03748 Flagellar basal body-associated protein FliL FFE93_012880 PF02154 Flagellar motor switch protein FliM FFE93_012880 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FFE93_012885 PF16973 Flagellar motor switch protein FliN N-terminal FFE93_012885 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FFE93_012890 PF04347 Flagellar biosynthesis protein, FliO FFE93_012895 PF00813 FliP family FFE93_012900 PF01313 Bacterial export proteins, family 3 FFE93_012905 PF01311 Bacterial export proteins, family 1 FFE93_012910 PF00669 Bacterial flagellin N-terminal helical region FFE93_012915 PF00460 Flagella basal body rod protein FFE93_012915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFE93_012920 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FFE93_012920 PF10135 Rod binding protein FFE93_012925 PF02119 Flagellar P-ring protein FFE93_012930 PF02107 Flagellar L-ring protein FFE93_012935 PF00460 Flagella basal body rod protein FFE93_012935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFE93_012940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFE93_012940 PF00460 Flagella basal body rod protein FFE93_012945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFE93_012945 PF00460 Flagella basal body rod protein FFE93_012945 PF07559 Flagellar basal body protein FlaE FFE93_012950 PF13860 FlgD Ig-like domain FFE93_012950 PF13861 FlgD Tudor-like domain FFE93_012950 PF03963 Flagellar hook capping protein - N-terminal region FFE93_012955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFE93_012955 PF00460 Flagella basal body rod protein FFE93_012960 PF00460 Flagella basal body rod protein FFE93_012965 PF17656 FlgA N-terminal domain FFE93_012965 PF13144 Chaperone for flagella basal body P-ring formation FFE93_012970 PF04316 Anti-sigma-28 factor, FlgM FFE93_012975 PF05130 FlgN protein FFE93_012980 PF06366 Flagellar protein FlhE FFE93_012985 PF00771 FHIPEP family FFE93_012990 PF01312 FlhB HrpN YscU SpaS Family FFE93_012995 PF04344 Chemotaxis phosphatase, CheZ FFE93_013000 PF00072 Response regulator receiver domain FFE93_013005 PF00072 Response regulator receiver domain FFE93_013005 PF01339 CheB methylesterase FFE93_013010 PF01739 CheR methyltransferase, SAM binding domain FFE93_013010 PF03705 CheR methyltransferase, all-alpha domain FFE93_013015 PF02203 Tar ligand binding domain homologue FFE93_013015 PF00672 HAMP domain FFE93_013015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_013020 PF00672 HAMP domain FFE93_013020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_013020 PF02203 Tar ligand binding domain homologue FFE93_013035 PF01584 CheW-like domain FFE93_013040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_013040 PF01627 Hpt domain FFE93_013040 PF02895 Signal transducing histidine kinase, homodimeric domain FFE93_013040 PF01584 CheW-like domain FFE93_013040 PF09078 CheY binding FFE93_013045 PF13677 Membrane MotB of proton-channel complex MotA/MotB FFE93_013045 PF00691 OmpA family FFE93_013050 PF01618 MotA/TolQ/ExbB proton channel family FFE93_013055 PF05280 Flagellar transcriptional activator (FlhC) FFE93_013060 PF05247 Flagellar transcriptional activator (FlhD) FFE93_013065 PF00582 Universal stress protein family FFE93_013070 PF00689 Cation transporting ATPase, C-terminus FFE93_013070 PF00690 Cation transporter/ATPase, N-terminus FFE93_013075 PF02308 MgtC family FFE93_013080 PF02203 Tar ligand binding domain homologue FFE93_013080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_013080 PF00672 HAMP domain FFE93_013085 PF10781 Dextransucrase DSRB FFE93_013090 PF00313 'Cold-shock' DNA-binding domain FFE93_013095 PF00356 Bacterial regulatory proteins, lacI family FFE93_013100 PF02837 Glycosyl hydrolases family 2, sugar binding domain FFE93_013100 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FFE93_013100 PF02929 Beta galactosidase small chain FFE93_013100 PF00703 Glycosyl hydrolases family 2 FFE93_013100 PF16353 Domain of unknown function(DUF4981) FFE93_013105 PF02801 Beta-ketoacyl synthase, C-terminal domain FFE93_013105 PF14765 Polyketide synthase dehydratase FFE93_013105 PF00550 Phosphopantetheine attachment site FFE93_013105 PF08659 KR domain FFE93_013105 PF00109 Beta-ketoacyl synthase, N-terminal domain FFE93_013105 PF16197 Ketoacyl-synthetase C-terminal extension FFE93_013105 PF00107 Zinc-binding dehydrogenase FFE93_013105 PF08240 Alcohol dehydrogenase GroES-like domain FFE93_013105 PF00698 Acyl transferase domain FFE93_013110 PF10777 Inner membrane protein YlaC FFE93_013115 PF01037 Lrp/AsnC ligand binding domain FFE93_013125 PF14001 YdfZ protein FFE93_013130 PF00328 Histidine phosphatase superfamily (branch 2) FFE93_013135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FFE93_013140 PF13953 PapC C-terminal domain FFE93_013140 PF00577 Outer membrane usher protein FFE93_013140 PF13954 PapC N-terminal domain FFE93_013150 PF06167 Glucose-regulated metallo-peptidase M90 FFE93_013165 PF01648 4'-phosphopantetheinyl transferase superfamily FFE93_013165 PF17837 4'-phosphopantetheinyl transferase N-terminal domain FFE93_013170 PF00939 Sodium:sulfate symporter transmembrane region FFE93_013175 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FFE93_013180 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase FFE93_013185 PF04223 Citrate lyase, alpha subunit (CitF) FFE93_013190 PF03328 HpcH/HpaI aldolase/citrate lyase family FFE93_013195 PF06857 Malonate decarboxylase delta subunit (MdcD) FFE93_013200 PF08218 Citrate lyase ligase C-terminal domain FFE93_013205 PF17203 Single cache domain 3 FFE93_013205 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain FFE93_013205 PF00989 PAS fold FFE93_013205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_013210 PF00072 Response regulator receiver domain FFE93_013210 PF12431 Transcriptional regulator FFE93_013215 PF00072 Response regulator receiver domain FFE93_013215 PF00196 Bacterial regulatory proteins, luxR family FFE93_013220 PF07730 Histidine kinase FFE93_013220 PF05231 MASE1 FFE93_013220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_013225 PF07690 Major Facilitator Superfamily FFE93_013235 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_013240 PF00005 ABC transporter FFE93_013240 PF08402 TOBE domain FFE93_013250 PF00196 Bacterial regulatory proteins, luxR family FFE93_013250 PF00072 Response regulator receiver domain FFE93_013255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_013255 PF00512 His Kinase A (phospho-acceptor) domain FFE93_013255 PF00989 PAS fold FFE93_013255 PF00072 Response regulator receiver domain FFE93_013255 PF00497 Bacterial extracellular solute-binding proteins, family 3 FFE93_013255 PF01627 Hpt domain FFE93_013265 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FFE93_013265 PF02753 Pili assembly chaperone PapD, C-terminal domain FFE93_013270 PF13954 PapC N-terminal domain FFE93_013270 PF00577 Outer membrane usher protein FFE93_013270 PF13953 PapC C-terminal domain FFE93_013280 PF02753 Pili assembly chaperone PapD, C-terminal domain FFE93_013280 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FFE93_013285 PF00849 RNA pseudouridylate synthase FFE93_013285 PF01479 S4 domain FFE93_013295 PF12848 ABC transporter FFE93_013295 PF00005 ABC transporter FFE93_013300 PF00072 Response regulator receiver domain FFE93_013300 PF01584 CheW-like domain FFE93_013305 PF01554 MatE FFE93_013310 PF00764 Arginosuccinate synthase FFE93_013315 PF02277 Phosphoribosyltransferase FFE93_013320 PF00300 Histidine phosphatase superfamily (branch 1) FFE93_013325 PF02654 Cobalamin-5-phosphate synthase FFE93_013330 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FFE93_013335 PF07685 CobB/CobQ-like glutamine amidotransferase domain FFE93_013340 PF00005 ABC transporter FFE93_013345 PF02361 Cobalt transport protein FFE93_013350 PF02553 Cobalt transport protein component CbiN FFE93_013355 PF01891 Cobalt uptake substrate-specific transmembrane region FFE93_013360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FFE93_013365 PF06180 Cobalt chelatase (CbiK) FFE93_013370 PF02571 Precorrin-6x reductase CbiJ/CobK FFE93_013375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FFE93_013380 PF01890 Cobalamin synthesis G C-terminus FFE93_013380 PF11761 Cobalamin biosynthesis central region FFE93_013380 PF11760 Cobalamin synthesis G N-terminal FFE93_013385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FFE93_013390 PF05175 Methyltransferase small domain FFE93_013395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FFE93_013400 PF01888 CbiD FFE93_013405 PF02570 Precorrin-8X methylmutase FFE93_013410 PF03186 CobD/Cbib protein FFE93_013415 PF07685 CobB/CobQ-like glutamine amidotransferase domain FFE93_013415 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FFE93_013420 PF12833 Helix-turn-helix domain FFE93_013420 PF10114 Sensory domain found in PocR FFE93_013425 PF00230 Major intrinsic protein FFE93_013430 PF00936 BMC domain FFE93_013435 PF00936 BMC domain FFE93_013440 PF02286 Dehydratase large subunit FFE93_013445 PF02288 Dehydratase medium subunit FFE93_013450 PF02287 Dehydratase small subunit FFE93_013455 PF18427 DD-reactivating factor swiveling domain FFE93_013455 PF08841 Diol dehydratase reactivase ATPase-like domain FFE93_013465 PF00936 BMC domain FFE93_013475 PF06130 Phosphate propanoyltransferase FFE93_013485 PF03319 Ethanolamine utilisation protein EutN/carboxysome FFE93_013490 PF03928 Haem-degrading FFE93_013495 PF00171 Aldehyde dehydrogenase family FFE93_013500 PF00465 Iron-containing alcohol dehydrogenase FFE93_013505 PF13375 RnfC Barrel sandwich hybrid domain FFE93_013505 PF10531 SLBB domain FFE93_013505 PF13237 4Fe-4S dicluster domain FFE93_013505 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FFE93_013515 PF00936 BMC domain FFE93_013520 PF10662 Ethanolamine utilisation - propanediol utilisation FFE93_013525 PF00871 Acetokinase family FFE93_013530 PF10414 Sirohaem synthase dimerisation region FFE93_013530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FFE93_013530 PF14824 Sirohaem biosynthesis protein central FFE93_013535 PF00155 Aminotransferase class I and II FFE93_013540 PF00288 GHMP kinases N terminal domain FFE93_013545 PF13407 Periplasmic binding protein domain FFE93_013555 PF02653 Branched-chain amino acid transport system / permease component FFE93_013560 PF02653 Branched-chain amino acid transport system / permease component FFE93_013565 PF04363 Protein of unknown function (DUF496) FFE93_013575 PF00929 Exonuclease FFE93_013575 PF08411 Exonuclease C-terminal FFE93_013580 PF13520 Amino acid permease FFE93_013590 PF00465 Iron-containing alcohol dehydrogenase FFE93_013595 PF00005 ABC transporter FFE93_013600 PF02653 Branched-chain amino acid transport system / permease component FFE93_013605 PF01370 NAD dependent epimerase/dehydratase family FFE93_013615 PF01634 ATP phosphoribosyltransferase FFE93_013615 PF08029 HisG, C-terminal domain FFE93_013620 PF00815 Histidinol dehydrogenase FFE93_013625 PF00155 Aminotransferase class I and II FFE93_013630 PF00475 Imidazoleglycerol-phosphate dehydratase FFE93_013635 PF00117 Glutamine amidotransferase class-I FFE93_013640 PF00977 Histidine biosynthesis protein FFE93_013645 PF00977 Histidine biosynthesis protein FFE93_013650 PF01502 Phosphoribosyl-AMP cyclohydrolase FFE93_013650 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase FFE93_013655 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FFE93_013655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FFE93_013660 PF00483 Nucleotidyl transferase FFE93_013665 PF00483 Nucleotidyl transferase FFE93_013670 PF00534 Glycosyl transferases group 1 FFE93_013670 PF13439 Glycosyltransferase Family 4 FFE93_013675 PF13439 Glycosyltransferase Family 4 FFE93_013680 PF16363 GDP-mannose 4,6 dehydratase FFE93_013685 PF16363 GDP-mannose 4,6 dehydratase FFE93_013700 PF14524 Wzt C-terminal domain FFE93_013700 PF00005 ABC transporter FFE93_013710 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FFE93_013710 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FFE93_013710 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FFE93_013710 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FFE93_013715 PF00483 Nucleotidyl transferase FFE93_013715 PF01050 Mannose-6-phosphate isomerase FFE93_013720 PF03471 Transporter associated domain FFE93_013720 PF00571 CBS domain FFE93_013720 PF03741 Integral membrane protein TerC family FFE93_013725 PF03606 C4-dicarboxylate anaerobic carrier FFE93_013730 PF05170 AsmA family FFE93_013735 PF00692 dUTPase FFE93_013740 PF00485 Phosphoribulokinase / Uridine kinase family FFE93_013745 PF10609 NUBPL iron-transfer P-loop NTPase FFE93_013750 PF01588 Putative tRNA binding domain FFE93_013750 PF09334 tRNA synthetases class I (M) FFE93_013765 PF07690 Major Facilitator Superfamily FFE93_013770 PF03788 LrgA family FFE93_013775 PF04172 LrgB-like family FFE93_013780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FFE93_013780 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region FFE93_013785 PF03949 Malic enzyme, NAD binding domain FFE93_013785 PF00390 Malic enzyme, N-terminal domain FFE93_013795 PF02698 DUF218 domain FFE93_013805 PF01455 HupF/HypC family FFE93_013810 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FFE93_013815 PF00037 4Fe-4S binding domain FFE93_013815 PF12798 4Fe-4S binding domain FFE93_013820 PF00361 Proton-conducting membrane transporter FFE93_013825 PF00146 NADH dehydrogenase FFE93_013830 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FFE93_013830 PF00361 Proton-conducting membrane transporter FFE93_013835 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FFE93_013840 PF00361 Proton-conducting membrane transporter FFE93_013840 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FFE93_013845 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FFE93_013845 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FFE93_013845 PF00374 Nickel-dependent hydrogenase FFE93_013850 PF12838 4Fe-4S dicluster domain FFE93_013855 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FFE93_013860 PF07450 Formate hydrogenlyase maturation protein HycH FFE93_013865 PF01750 Hydrogenase maturation protease FFE93_013870 PF12800 4Fe-4S binding domain FFE93_013870 PF13247 4Fe-4S dicluster domain FFE93_013875 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FFE93_013875 PF00384 Molybdopterin oxidoreductase FFE93_013875 PF01568 Molydopterin dinucleotide binding domain FFE93_013880 PF01590 GAF domain FFE93_013880 PF00158 Sigma-54 interaction domain FFE93_013885 PF02653 Branched-chain amino acid transport system / permease component FFE93_013890 PF00005 ABC transporter FFE93_013895 PF13407 Periplasmic binding protein domain FFE93_013900 PF00356 Bacterial regulatory proteins, lacI family FFE93_013905 PF04235 Protein of unknown function (DUF418) FFE93_013910 PF01227 GTP cyclohydrolase I FFE93_013915 PF06779 Uncharacterised MFS-type transporter YbfB FFE93_013920 PF03466 LysR substrate binding domain FFE93_013920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_013925 PF00107 Zinc-binding dehydrogenase FFE93_013925 PF08240 Alcohol dehydrogenase GroES-like domain FFE93_013930 PF00756 Putative esterase FFE93_013950 PF00005 ABC transporter FFE93_013965 PF03453 MoeA N-terminal region (domain I and II) FFE93_013965 PF00994 Probable molybdopterin binding domain FFE93_013965 PF03454 MoeA C-terminal region (domain IV) FFE93_013970 PF00899 ThiF family FFE93_013975 PF00005 ABC transporter FFE93_013975 PF12848 ABC transporter FFE93_013995 PF13505 Outer membrane protein beta-barrel domain FFE93_014000 PF00892 EamA-like transporter family FFE93_014010 PF02469 Fasciclin domain FFE93_014030 PF00210 Ferritin-like domain FFE93_014035 PF01258 Prokaryotic dksA/traR C4-type zinc finger FFE93_014040 PF00497 Bacterial extracellular solute-binding proteins, family 3 FFE93_014045 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_014050 PF00005 ABC transporter FFE93_014055 PF05971 RNA methyltransferase FFE93_014070 PF02885 Glycosyl transferase family, helical bundle domain FFE93_014075 PF00230 Major intrinsic protein FFE93_014080 PF13307 Helicase C-terminal domain FFE93_014080 PF06733 DEAD_2 FFE93_014085 PF00267 Gram-negative porin FFE93_014095 PF00892 EamA-like transporter family FFE93_014105 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain FFE93_014105 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain FFE93_014105 PF01276 Orn/Lys/Arg decarboxylase, major domain FFE93_014110 PF13520 Amino acid permease FFE93_014115 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_014120 PF00005 ABC transporter FFE93_014125 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_014130 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FFE93_014135 PF00232 Glycosyl hydrolase family 1 FFE93_014140 PF00367 phosphotransferase system, EIIB FFE93_014140 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FFE93_014140 PF02378 Phosphotransferase system, EIIC FFE93_014145 PF01380 SIS domain FFE93_014145 PF01418 Helix-turn-helix domain, rpiR family FFE93_014150 PF01610 Transposase FFE93_014150 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FFE93_014150 PF13542 Helix-turn-helix domain of transposase family ISL3 FFE93_014155 PF06183 DinI-like family FFE93_014160 PF01278 Omptin family FFE93_014165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_014165 PF02743 Cache domain FFE93_014165 PF00672 HAMP domain FFE93_014170 PF12706 Beta-lactamase superfamily domain FFE93_014180 PF00144 Beta-lactamase FFE93_014195 PF00267 Gram-negative porin FFE93_014205 PF07690 Major Facilitator Superfamily FFE93_014210 PF01627 Hpt domain FFE93_014210 PF16359 RcsD-ABL domain FFE93_014210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_014215 PF00072 Response regulator receiver domain FFE93_014215 PF00196 Bacterial regulatory proteins, luxR family FFE93_014220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_014220 PF00072 Response regulator receiver domain FFE93_014220 PF09456 RcsC Alpha-Beta-Loop (ABL) FFE93_014220 PF00512 His Kinase A (phospho-acceptor) domain FFE93_014225 PF00521 DNA gyrase/topoisomerase IV, subunit A FFE93_014225 PF03989 DNA gyrase C-terminal domain, beta-propeller FFE93_014235 PF02867 Ribonucleotide reductase, barrel domain FFE93_014235 PF03477 ATP cone domain FFE93_014235 PF00317 Ribonucleotide reductase, all-alpha domain FFE93_014240 PF00268 Ribonucleotide reductase, small chain FFE93_014245 PF00111 2Fe-2S iron-sulfur cluster binding domain FFE93_014250 PF03974 Ecotin FFE93_014255 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) FFE93_014255 PF06594 Haemolysin-type calcium binding protein related domain FFE93_014275 PF00994 Probable molybdopterin binding domain FFE93_014280 PF03222 Tryptophan/tyrosine permease family FFE93_014285 PF07437 YfaZ precursor FFE93_014290 PF06628 Catalase-related immune-responsive FFE93_014290 PF00199 Catalase FFE93_014295 PF13193 AMP-binding enzyme C-terminal domain FFE93_014295 PF00501 AMP-binding enzyme FFE93_014300 PF13378 Enolase C-terminal domain-like FFE93_014305 PF00378 Enoyl-CoA hydratase/isomerase FFE93_014310 PF12697 Alpha/beta hydrolase family FFE93_014315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FFE93_014315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FFE93_014315 PF16582 Middle domain of thiamine pyrophosphate FFE93_014320 PF00425 chorismate binding enzyme FFE93_014330 PF13018 Extended Signal Peptide of Type V secretion system FFE93_014330 PF02395 Immunoglobulin A1 protease FFE93_014330 PF03797 Autotransporter beta-domain FFE93_014335 PF05957 Bacterial protein of unknown function (DUF883) FFE93_014340 PF00920 Dehydratase family FFE93_014345 PF03928 Haem-degrading FFE93_014350 PF07690 Major Facilitator Superfamily FFE93_014355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FFE93_014355 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FFE93_014360 PF00356 Bacterial regulatory proteins, lacI family FFE93_014365 PF00106 short chain dehydrogenase FFE93_014370 PF01202 Shikimate kinase FFE93_014380 PF06496 Protein of unknown function (DUF1097) FFE93_014385 PF00361 Proton-conducting membrane transporter FFE93_014390 PF00361 Proton-conducting membrane transporter FFE93_014395 PF00361 Proton-conducting membrane transporter FFE93_014395 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FFE93_014400 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FFE93_014405 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FFE93_014410 PF12838 4Fe-4S dicluster domain FFE93_014415 PF00146 NADH dehydrogenase FFE93_014420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FFE93_014420 PF00384 Molybdopterin oxidoreductase FFE93_014420 PF01568 Molydopterin dinucleotide binding domain FFE93_014420 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FFE93_014425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FFE93_014425 PF10531 SLBB domain FFE93_014425 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FFE93_014435 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FFE93_014435 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FFE93_014440 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FFE93_014445 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FFE93_014450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_014450 PF03466 LysR substrate binding domain FFE93_014455 PF00155 Aminotransferase class I and II FFE93_014470 PF03600 Citrate transporter FFE93_014470 PF02080 TrkA-C domain FFE93_014480 PF13419 Haloacid dehalogenase-like hydrolase FFE93_014485 PF03887 YfbU domain FFE93_014490 PF04217 Protein of unknown function, DUF412 FFE93_014495 PF00871 Acetokinase family FFE93_014500 PF01515 Phosphate acetyl/butaryl transferase FFE93_014500 PF07085 DRTGG domain FFE93_014505 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FFE93_014505 PF00356 Bacterial regulatory proteins, lacI family FFE93_014510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FFE93_014520 PF03611 PTS system sugar-specific permease component FFE93_014525 PF03459 TOBE domain FFE93_014525 PF00005 ABC transporter FFE93_014530 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_014540 PF10766 Multidrug efflux pump-associated protein AcrZ FFE93_014545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_014545 PF03459 TOBE domain FFE93_014550 PF00005 ABC transporter FFE93_014560 PF16363 GDP-mannose 4,6 dehydratase FFE93_014565 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain FFE93_014565 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain FFE93_014570 PF08544 GHMP kinases C terminal FFE93_014570 PF00288 GHMP kinases N terminal domain FFE93_014570 PF10509 Galactokinase galactose-binding signature FFE93_014575 PF01263 Aldose 1-epimerase FFE93_014580 PF07769 psiF repeat FFE93_014585 PF00300 Histidine phosphatase superfamily (branch 1) FFE93_014590 PF00793 DAHP synthetase I family FFE93_014595 PF01545 Cation efflux family FFE93_014600 PF04973 Nicotinamide mononucleotide transporter FFE93_014605 PF02445 Quinolinate synthetase A protein FFE93_014635 PF16331 TolA binding protein trimerisation FFE93_014635 PF13174 Tetratricopeptide repeat FFE93_014640 PF00691 OmpA family FFE93_014645 PF04052 TolB amino-terminal domain FFE93_014645 PF07676 WD40-like Beta Propeller Repeat FFE93_014650 PF06519 TolA C-terminal FFE93_014650 PF06519 TolA C-terminal FFE93_014655 PF02472 Biopolymer transport protein ExbD/TolR FFE93_014660 PF01618 MotA/TolQ/ExbB proton channel family FFE93_014665 PF03061 Thioesterase superfamily FFE93_014670 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) FFE93_014675 PF08173 Membrane bound YbgT-like protein FFE93_014680 PF02322 Cytochrome bd terminal oxidase subunit II FFE93_014685 PF01654 Cytochrome bd terminal oxidase subunit I FFE93_014690 PF02872 5'-nucleotidase, C-terminal domain FFE93_014690 PF00149 Calcineurin-like phosphoesterase FFE93_014695 PF02629 CoA binding domain FFE93_014695 PF00549 CoA-ligase FFE93_014700 PF00549 CoA-ligase FFE93_014700 PF08442 ATP-grasp domain FFE93_014705 PF00364 Biotin-requiring enzyme FFE93_014705 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FFE93_014705 PF02817 e3 binding domain FFE93_014710 PF16078 2-oxoglutarate dehydrogenase N-terminus FFE93_014710 PF00676 Dehydrogenase E1 component FFE93_014710 PF16870 2-oxoglutarate dehydrogenase C-terminal FFE93_014710 PF02779 Transketolase, pyrimidine binding domain FFE93_014715 PF13085 2Fe-2S iron-sulfur cluster binding domain FFE93_014720 PF00890 FAD binding domain FFE93_014720 PF02910 Fumarate reductase flavoprotein C-term FFE93_014725 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FFE93_014730 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FFE93_014735 PF00285 Citrate synthase, C-terminal domain FFE93_014745 PF01470 Pyroglutamyl peptidase FFE93_014760 PF03746 LamB/YcsF family FFE93_014765 PF02626 Carboxyltransferase domain, subdomain A and B FFE93_014770 PF02682 Carboxyltransferase domain, subdomain C and D FFE93_014775 PF01784 NIF3 (NGG1p interacting factor 3) FFE93_014780 PF02112 cAMP phosphodiesterases class-II FFE93_014785 PF00875 DNA photolyase FFE93_014785 PF03441 FAD binding domain of DNA photolyase FFE93_014790 PF08349 Protein of unknown function (DUF1722) FFE93_014795 PF10725 Protein of unknown function (DUF2517) FFE93_014800 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) FFE93_014805 PF03814 Potassium-transporting ATPase A subunit FFE93_014815 PF02669 K+-transporting ATPase, c chain FFE93_014820 PF13493 Domain of unknown function (DUF4118) FFE93_014820 PF13492 GAF domain FFE93_014820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_014820 PF00512 His Kinase A (phospho-acceptor) domain FFE93_014820 PF02702 Osmosensitive K+ channel His kinase sensor domain FFE93_014825 PF00072 Response regulator receiver domain FFE93_014825 PF00486 Transcriptional regulatory protein, C terminal FFE93_014845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FFE93_014845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FFE93_014845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FFE93_014845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FFE93_014850 PF03925 SeqA protein C-terminal domain FFE93_014850 PF17206 SeqA protein N-terminal domain FFE93_014855 PF12697 Alpha/beta hydrolase family FFE93_014860 PF01402 Ribbon-helix-helix protein, copG family FFE93_014865 PF00672 HAMP domain FFE93_014865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_014865 PF02203 Tar ligand binding domain homologue FFE93_014870 PF00258 Flavodoxin FFE93_014875 PF01475 Ferric uptake regulator family FFE93_014880 PF03173 Putative carbohydrate binding domain FFE93_014880 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain FFE93_014880 PF00728 Glycosyl hydrolase family 20, catalytic domain FFE93_014880 PF02838 Glycosyl hydrolase family 20, domain 2 FFE93_014885 PF13982 YbfN-like lipoprotein FFE93_014890 PF03573 outer membrane porin, OprD family FFE93_014895 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FFE93_014895 PF00749 tRNA synthetases class I (E and Q), catalytic domain FFE93_014900 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FFE93_014900 PF00367 phosphotransferase system, EIIB FFE93_014900 PF02378 Phosphotransferase system, EIIC FFE93_014905 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FFE93_014910 PF01979 Amidohydrolase family FFE93_014915 PF00480 ROK family FFE93_014915 PF01047 MarR family FFE93_014920 PF13344 Haloacid dehalogenase-like hydrolase FFE93_014925 PF00733 Asparagine synthase FFE93_014925 PF13537 Glutamine amidotransferase domain FFE93_014960 PF01494 FAD binding domain FFE93_014965 PF00919 Uncharacterized protein family UPF0004 FFE93_014965 PF04055 Radical SAM superfamily FFE93_014965 PF01938 TRAM domain FFE93_014970 PF02562 PhoH-like protein FFE93_014975 PF02130 Uncharacterized protein family UPF0054 FFE93_014980 PF03471 Transporter associated domain FFE93_014980 PF00571 CBS domain FFE93_014985 PF00795 Carbon-nitrogen hydrolase FFE93_015000 PF00497 Bacterial extracellular solute-binding proteins, family 3 FFE93_015005 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_015010 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_015015 PF00005 ABC transporter FFE93_015020 PF07295 Zinc-ribbon containing domain FFE93_015025 PF08264 Anticodon-binding domain of tRNA FFE93_015025 PF00133 tRNA synthetases class I (I, L, M and V) FFE93_015025 PF13603 Leucyl-tRNA synthetase, Domain 2 FFE93_015030 PF04390 Lipopolysaccharide-assembly FFE93_015035 PF06144 DNA polymerase III, delta subunit FFE93_015035 PF14840 Processivity clamp loader gamma complex DNA pol III C-term FFE93_015040 PF01467 Cytidylyltransferase-like FFE93_015050 PF02590 Predicted SPOUT methyltransferase FFE93_015055 PF03717 Penicillin-binding Protein dimerisation domain FFE93_015055 PF00905 Penicillin binding protein transpeptidase domain FFE93_015060 PF01098 Cell cycle protein FFE93_015065 PF03330 Lytic transglycolase FFE93_015065 PF05036 Sporulation related domain FFE93_015070 PF00768 D-alanyl-D-alanine carboxypeptidase FFE93_015070 PF07943 Penicillin-binding protein 5, C-terminal domain FFE93_015075 PF04359 Protein of unknown function (DUF493) FFE93_015080 PF03099 Biotin/lipoate A/B protein ligase family FFE93_015085 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family FFE93_015085 PF04055 Radical SAM superfamily FFE93_015090 PF02416 mttA/Hcf106 family FFE93_015095 PF05230 MASE2 domain FFE93_015095 PF00990 Diguanylate cyclase, GGDEF domain FFE93_015100 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FFE93_015105 PF00313 'Cold-shock' DNA-binding domain FFE93_015110 PF00313 'Cold-shock' DNA-binding domain FFE93_015115 PF00196 Bacterial regulatory proteins, luxR family FFE93_015125 PF00149 Calcineurin-like phosphoesterase FFE93_015140 PF00005 ABC transporter FFE93_015140 PF00664 ABC transporter transmembrane region FFE93_015145 PF08007 Cupin superfamily protein FFE93_015150 PF00239 Resolvase, N terminal domain FFE93_015150 PF13408 Recombinase zinc beta ribbon domain FFE93_015150 PF07508 Recombinase FFE93_015180 PF02413 Caudovirales tail fibre assembly protein, lambda gpK FFE93_015185 PF07484 Phage Tail Collar Domain FFE93_015235 PF04984 Phage tail sheath protein subtilisin-like domain FFE93_015235 PF17482 Phage tail sheath C-terminal domain FFE93_015335 PF06530 Phage antitermination protein Q FFE93_015400 PF14659 Phage integrase, N-terminal SAM-like domain FFE93_015400 PF00589 Phage integrase family FFE93_015400 PF13356 Arm DNA-binding domain FFE93_015410 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FFE93_015410 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FFE93_015420 PF01406 tRNA synthetases class I (C) catalytic domain FFE93_015420 PF09190 DALR domain FFE93_015425 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FFE93_015430 PF00149 Calcineurin-like phosphoesterase FFE93_015435 PF00731 AIR carboxylase FFE93_015440 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FFE93_015440 PF02222 ATP-grasp domain FFE93_015450 PF00005 ABC transporter FFE93_015455 PF13472 GDSL-like Lipase/Acylhydrolase family FFE93_015460 PF00106 short chain dehydrogenase FFE93_015465 PF00085 Thioredoxin FFE93_015470 PF16200 C-terminal region of band_7 FFE93_015470 PF01145 SPFH domain / Band 7 family FFE93_015475 PF01957 NfeD-like C-terminal, partner-binding FFE93_015480 PF13411 MerR HTH family regulatory protein FFE93_015485 PF00403 Heavy-metal-associated domain FFE93_015490 PF01963 TraB family FFE93_015495 PF04073 Aminoacyl-tRNA editing domain FFE93_015515 PF00149 Calcineurin-like phosphoesterase FFE93_015515 PF02872 5'-nucleotidase, C-terminal domain FFE93_015520 PF07690 Major Facilitator Superfamily FFE93_015525 PF02254 TrkA-N domain FFE93_015525 PF00999 Sodium/hydrogen exchanger family FFE93_015530 PF00294 pfkB family carbohydrate kinase FFE93_015535 PF02706 Chain length determinant protein FFE93_015540 PF16363 GDP-mannose 4,6 dehydratase FFE93_015545 PF13439 Glycosyltransferase Family 4 FFE93_015545 PF00534 Glycosyl transferases group 1 FFE93_015550 PF01370 NAD dependent epimerase/dehydratase family FFE93_015580 PF13737 Transposase DDE domain FFE93_015590 PF00762 Ferrochelatase FFE93_015595 PF05191 Adenylate kinase, active site lid FFE93_015600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_015600 PF00183 Hsp90 protein FFE93_015605 PF02132 RecR protein FFE93_015605 PF13662 Toprim domain FFE93_015610 PF02575 YbaB/EbfC DNA-binding family FFE93_015615 PF12169 DNA polymerase III subunits gamma and tau domain III FFE93_015615 PF12170 DNA polymerase III tau subunit V interacting with alpha FFE93_015615 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FFE93_015620 PF00156 Phosphoribosyl transferase domain FFE93_015625 PF04304 Protein of unknown function (DUF454) FFE93_015635 PF10689 Protein of unknown function (DUF2496) FFE93_015640 PF12794 Mechanosensitive ion channel inner membrane domain 1 FFE93_015640 PF12795 Mechanosensitive ion channel porin domain FFE93_015640 PF00924 Mechanosensitive ion channel FFE93_015645 PF02635 DsrE/DsrF-like family FFE93_015650 PF00440 Bacterial regulatory proteins, tetR family FFE93_015650 PF08361 MAATS-type transcriptional repressor, C-terminal region FFE93_015655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_015655 PF00529 HlyD membrane-fusion protein of T1SS FFE93_015660 PF00873 AcrB/AcrD/AcrF family FFE93_015670 PF01168 Alanine racemase, N-terminal domain FFE93_015675 PF01676 Metalloenzyme superfamily FFE93_015680 PF01197 Ribosomal protein L31 FFE93_015685 PF00444 Ribosomal protein L36 FFE93_015690 PF01297 Zinc-uptake complex component A periplasmic FFE93_015695 PF00950 ABC 3 transport family FFE93_015700 PF00005 ABC transporter FFE93_015710 PF10757 Biofilm formation regulator YbaJ FFE93_015715 PF05321 Haemolysin expression modulating protein FFE93_015725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FFE93_015730 PF09619 Type III secretion system lipoprotein chaperone (YscW) FFE93_015740 PF00909 Ammonium Transporter Family FFE93_015745 PF00543 Nitrogen regulatory protein P-II FFE93_015750 PF00664 ABC transporter transmembrane region FFE93_015750 PF00005 ABC transporter FFE93_015755 PF00005 ABC transporter FFE93_015755 PF00664 ABC transporter transmembrane region FFE93_015760 PF01037 Lrp/AsnC ligand binding domain FFE93_015760 PF13404 AsnC-type helix-turn-helix domain FFE93_015775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FFE93_015775 PF12793 Sugar transport-related sRNA regulator N-term FFE93_015780 PF06508 Queuosine biosynthesis protein QueC FFE93_015795 PF13145 PPIC-type PPIASE domain FFE93_015800 PF00216 Bacterial DNA-binding protein FFE93_015805 PF02190 ATP-dependent protease La (LON) substrate-binding domain FFE93_015805 PF05362 Lon protease (S16) C-terminal proteolytic domain FFE93_015805 PF00004 ATPase family associated with various cellular activities (AAA) FFE93_015810 PF10431 C-terminal, D2-small domain, of ClpB protein FFE93_015810 PF06689 ClpX C4-type zinc finger FFE93_015810 PF07724 AAA domain (Cdc48 subfamily) FFE93_015815 PF00574 Clp protease FFE93_015820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FFE93_015820 PF05698 Bacterial trigger factor protein (TF) C-terminus FFE93_015820 PF05697 Bacterial trigger factor protein (TF) FFE93_015830 PF01722 BolA-like protein FFE93_015835 PF03923 Uncharacterized lipoprotein FFE93_015835 PF08139 Prokaryotic membrane lipoprotein lipid attachment site FFE93_015840 PF07690 Major Facilitator Superfamily FFE93_015845 PF03502 Nucleoside-specific channel-forming protein, Tsx FFE93_015850 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FFE93_015850 PF06481 COX Aromatic Rich Motif FFE93_015855 PF00115 Cytochrome C and Quinol oxidase polypeptide I FFE93_015860 PF00510 Cytochrome c oxidase subunit III FFE93_015865 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FFE93_015870 PF01040 UbiA prenyltransferase family FFE93_015875 PF07690 Major Facilitator Superfamily FFE93_015880 PF04461 Protein of unknown function (DUF520) FFE93_015885 PF08546 Ketopantoate reductase PanE/ApbA C terminal FFE93_015885 PF02558 Ketopantoate reductase PanE/ApbA FFE93_015890 PF01965 DJ-1/PfpI family FFE93_015895 PF02568 Thiamine biosynthesis protein (ThiI) FFE93_015895 PF02926 THUMP domain FFE93_015900 PF02609 Exonuclease VII small subunit FFE93_015905 PF00348 Polyprenyl synthetase FFE93_015910 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FFE93_015910 PF02779 Transketolase, pyrimidine binding domain FFE93_015910 PF02780 Transketolase, C-terminal domain FFE93_015915 PF04608 Phosphatidylglycerophosphatase A FFE93_015920 PF02769 AIR synthase related protein, C-terminal domain FFE93_015920 PF00586 AIR synthase related protein, N-terminal domain FFE93_015925 PF01029 NusB family FFE93_015930 PF00885 6,7-dimethyl-8-ribityllumazine synthase FFE93_015935 PF01872 RibD C-terminal domain FFE93_015935 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FFE93_015940 PF03477 ATP cone domain FFE93_015950 PF02355 Protein export membrane protein FFE93_015950 PF07549 SecD/SecF GG Motif FFE93_015955 PF07549 SecD/SecF GG Motif FFE93_015955 PF13721 SecD export protein N-terminal TM region FFE93_015955 PF02355 Protein export membrane protein FFE93_015960 PF02699 Preprotein translocase subunit FFE93_015965 PF01702 Queuine tRNA-ribosyltransferase FFE93_015970 PF01040 UbiA prenyltransferase family FFE93_016070 PF03245 Bacteriophage Rz lysis protein FFE93_016090 PF05866 Endodeoxyribonuclease RusA FFE93_016095 PF07102 Protein of unknown function (DUF1364) FFE93_016265 PF00589 Phage integrase family FFE93_016270 PF02547 Queuosine biosynthesis protein FFE93_016275 PF04336 Acyl carrier protein phosphodiesterase FFE93_016280 PF10417 C-terminal domain of 1-Cys peroxiredoxin FFE93_016280 PF00578 AhpC/TSA family FFE93_016285 PF01848 Hok/gef family FFE93_016300 PF02903 Alpha amylase, N-terminal ig-like domain FFE93_016300 PF00128 Alpha amylase, catalytic domain FFE93_016305 PF00324 Amino acid permease FFE93_016310 PF05525 Branched-chain amino acid transport protein FFE93_016315 PF12849 PBP superfamily domain FFE93_016320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_016320 PF00512 His Kinase A (phospho-acceptor) domain FFE93_016320 PF00989 PAS fold FFE93_016320 PF11808 Phosphate regulon sensor protein PhoR FFE93_016325 PF00486 Transcriptional regulatory protein, C terminal FFE93_016325 PF00072 Response regulator receiver domain FFE93_016330 PF12320 Type 5 capsule protein repressor C-terminal domain FFE93_016330 PF00149 Calcineurin-like phosphoesterase FFE93_016335 PF13476 AAA domain FFE93_016340 PF00480 ROK family FFE93_016345 PF04381 Putative exonuclease, RdgC FFE93_016350 PF06865 Pyrimidine/purine nucleoside phosphorylase FFE93_016355 PF01202 Shikimate kinase FFE93_016395 PF07317 Flagellar regulator YcgR FFE93_016395 PF07238 PilZ domain FFE93_016400 PF00171 Aldehyde dehydrogenase family FFE93_016405 PF00696 Amino acid kinase family FFE93_016405 PF01472 PUA domain FFE93_016410 PF07417 Sigma factor-binding transcriptional regulator Crl FFE93_016420 PF00156 Phosphoribosyl transferase domain FFE93_016425 PF07687 Peptidase dimerisation domain FFE93_016425 PF01546 Peptidase family M20/M25/M40 FFE93_016430 PF11799 impB/mucB/samB family C-terminal domain FFE93_016430 PF00817 impB/mucB/samB family FFE93_016430 PF11798 IMS family HHH motif FFE93_016435 PF03009 Glycerophosphoryl diester phosphodiesterase family FFE93_016440 PF04400 (Na+)-NQR maturation NqrM FFE93_016445 PF02424 ApbE family FFE93_016450 PF00970 Oxidoreductase FAD-binding domain FFE93_016450 PF00111 2Fe-2S iron-sulfur cluster binding domain FFE93_016450 PF00175 Oxidoreductase NAD-binding domain FFE93_016455 PF02508 Rnf-Nqr subunit, membrane protein FFE93_016460 PF02508 Rnf-Nqr subunit, membrane protein FFE93_016465 PF04205 FMN-binding domain FFE93_016470 PF03116 NQR2, RnfD, RnfE family FFE93_016475 PF11973 NQRA C-terminal domain FFE93_016475 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) FFE93_016480 PF03734 L,D-transpeptidase catalytic domain FFE93_016485 PF13230 Glutamine amidotransferases class-II FFE93_016490 PF13580 SIS domain FFE93_016495 PF09317 Domain of unknown function (DUF1974) FFE93_016495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FFE93_016495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FFE93_016500 PF18254 HMW1 domain 2 FFE93_016500 PF18071 HMW1C N-terminal FFE93_016505 PF05860 haemagglutination activity domain FFE93_016510 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FFE93_016510 PF08479 POTRA domain, ShlB-type FFE93_016515 PF01636 Phosphotransferase enzyme family FFE93_016520 PF01008 Initiation factor 2 subunit family FFE93_016525 PF03079 ARD/ARD' family FFE93_016535 PF00596 Class II Aldolase and Adducin N-terminal domain FFE93_016540 PF00155 Aminotransferase class I and II FFE93_016545 PF00795 Carbon-nitrogen hydrolase FFE93_016550 PF07690 Major Facilitator Superfamily FFE93_016555 PF03591 AzlC protein FFE93_016560 PF05437 Branched-chain amino acid transport protein (AzlD) FFE93_016565 PF01047 MarR family FFE93_016570 PF00529 HlyD membrane-fusion protein of T1SS FFE93_016570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_016575 PF07690 Major Facilitator Superfamily FFE93_016580 PF00588 SpoU rRNA Methylase family FFE93_016580 PF08032 RNA 2'-O ribose methyltransferase substrate binding FFE93_016585 PF00085 Thioredoxin FFE93_016595 PF13607 Succinyl-CoA ligase like flavodoxin domain FFE93_016595 PF00583 Acetyltransferase (GNAT) family FFE93_016595 PF13380 CoA binding domain FFE93_016600 PF13091 PLD-like domain FFE93_016640 PF17871 AAA lid domain FFE93_016640 PF00004 ATPase family associated with various cellular activities (AAA) FFE93_016640 PF10431 C-terminal, D2-small domain, of ClpB protein FFE93_016640 PF07724 AAA domain (Cdc48 subfamily) FFE93_016640 PF02861 Clp amino terminal domain, pathogenicity island component FFE93_016650 PF00849 RNA pseudouridylate synthase FFE93_016650 PF01479 S4 domain FFE93_016660 PF13525 Outer membrane lipoprotein FFE93_016665 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FFE93_016670 PF00800 Prephenate dehydratase FFE93_016670 PF01817 Chorismate mutase type II FFE93_016675 PF02153 Prephenate dehydrogenase FFE93_016675 PF01817 Chorismate mutase type II FFE93_016680 PF00793 DAHP synthetase I family FFE93_016685 PF04397 LytTr DNA-binding domain FFE93_016685 PF00072 Response regulator receiver domain FFE93_016690 PF03605 Anaerobic c4-dicarboxylate membrane transporter FFE93_016695 PF04338 Protein of unknown function, DUF481 FFE93_016700 PF01245 Ribosomal protein L19 FFE93_016705 PF01746 tRNA (Guanine-1)-methyltransferase FFE93_016710 PF05239 PRC-barrel domain FFE93_016710 PF01782 RimM N-terminal domain FFE93_016715 PF00886 Ribosomal protein S16 FFE93_016720 PF02978 Signal peptide binding domain FFE93_016720 PF02881 SRP54-type protein, helical bundle domain FFE93_016720 PF00448 SRP54-type protein, GTPase domain FFE93_016725 PF01578 Cytochrome C assembly protein FFE93_016730 PF00571 CBS domain FFE93_016730 PF03471 Transporter associated domain FFE93_016730 PF01595 Cyclin M transmembrane N-terminal domain FFE93_016735 PF02664 S-Ribosylhomocysteinase (LuxS) FFE93_016740 PF04262 Glutamate-cysteine ligase FFE93_016745 PF09335 SNARE associated Golgi protein FFE93_016750 PF13419 Haloacid dehalogenase-like hydrolase FFE93_016785 PF02599 Global regulator protein family FFE93_016790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FFE93_016790 PF01411 tRNA synthetases class II (A) FFE93_016790 PF02272 DHHA1 domain FFE93_016795 PF02631 RecX family FFE93_016800 PF00154 recA bacterial DNA recombination protein FFE93_016805 PF02464 Competence-damaged protein FFE93_016810 PF07690 Major Facilitator Superfamily FFE93_016825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FFE93_016825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FFE93_016830 PF02780 Transketolase, C-terminal domain FFE93_016830 PF02779 Transketolase, pyrimidine binding domain FFE93_016835 PF00456 Transketolase, thiamine diphosphate binding domain FFE93_016840 PF02653 Branched-chain amino acid transport system / permease component FFE93_016845 PF00005 ABC transporter FFE93_016855 PF00356 Bacterial regulatory proteins, lacI family FFE93_016870 PF02613 Nitrate reductase delta subunit FFE93_016875 PF04976 DMSO reductase anchor subunit (DmsC) FFE93_016880 PF12800 4Fe-4S binding domain FFE93_016880 PF13247 4Fe-4S dicluster domain FFE93_016885 PF01568 Molydopterin dinucleotide binding domain FFE93_016885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FFE93_016885 PF00384 Molybdopterin oxidoreductase FFE93_016890 PF00465 Iron-containing alcohol dehydrogenase FFE93_016895 PF00596 Class II Aldolase and Adducin N-terminal domain FFE93_016900 PF07690 Major Facilitator Superfamily FFE93_016905 PF07882 L-fucose isomerase, second N-terminal domain FFE93_016905 PF02952 L-fucose isomerase, C-terminal domain FFE93_016905 PF07881 L-fucose isomerase, first N-terminal domain FFE93_016910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FFE93_016910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FFE93_016915 PF05025 RbsD / FucU transport protein family FFE93_016920 PF00455 DeoR C terminal sensor domain FFE93_016920 PF08220 DeoR-like helix-turn-helix domain FFE93_016925 PF05681 Fumarate hydratase (Fumerase) FFE93_016925 PF05683 Fumarase C-terminus FFE93_016930 PF01022 Bacterial regulatory protein, arsR family FFE93_016935 PF03144 Elongation factor Tu domain 2 FFE93_016935 PF00679 Elongation factor G C-terminus FFE93_016935 PF03764 Elongation factor G, domain IV FFE93_016935 PF14492 Elongation Factor G, domain II FFE93_016935 PF00009 Elongation factor Tu GTP binding domain FFE93_016950 PF01546 Peptidase family M20/M25/M40 FFE93_016955 PF00005 ABC transporter FFE93_016960 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_016965 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_016975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FFE93_016975 PF00005 ABC transporter FFE93_016980 PF00005 ABC transporter FFE93_016980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FFE93_016990 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_016995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FFE93_017000 PF13378 Enolase C-terminal domain-like FFE93_017000 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FFE93_017020 PF02801 Beta-ketoacyl synthase, C-terminal domain FFE93_017020 PF00109 Beta-ketoacyl synthase, N-terminal domain FFE93_017025 PF02321 Outer membrane efflux protein FFE93_017030 PF12704 MacB-like periplasmic core domain FFE93_017030 PF02687 FtsX-like permease family FFE93_017030 PF00005 ABC transporter FFE93_017035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_017040 PF03412 Peptidase C39 family FFE93_017040 PF00005 ABC transporter FFE93_017040 PF00664 ABC transporter transmembrane region FFE93_017070 PF00419 Fimbrial protein FFE93_017080 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FFE93_017080 PF02753 Pili assembly chaperone PapD, C-terminal domain FFE93_017085 PF13954 PapC N-terminal domain FFE93_017085 PF00577 Outer membrane usher protein FFE93_017085 PF13953 PapC C-terminal domain FFE93_017090 PF00419 Fimbrial protein FFE93_017095 PF00419 Fimbrial protein FFE93_017110 PF05190 MutS family domain IV FFE93_017110 PF05192 MutS domain III FFE93_017110 PF05188 MutS domain II FFE93_017110 PF01624 MutS domain I FFE93_017110 PF00488 MutS domain V FFE93_017115 PF00140 Sigma-70 factor, region 1.2 FFE93_017115 PF04545 Sigma-70, region 4 FFE93_017115 PF04539 Sigma-70 region 3 FFE93_017115 PF04542 Sigma-70 region 2 FFE93_017120 PF01551 Peptidase family M23 FFE93_017120 PF01476 LysM domain FFE93_017130 PF01975 Survival protein SurE FFE93_017135 PF01142 tRNA pseudouridine synthase D (TruD) FFE93_017140 PF02542 YgbB family FFE93_017145 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FFE93_017150 PF04977 Septum formation initiator FFE93_017155 PF04198 Putative sugar-binding domain FFE93_017160 PF02734 DAK2 domain FFE93_017165 PF02733 Dak1 domain FFE93_017175 PF07690 Major Facilitator Superfamily FFE93_017180 PF08240 Alcohol dehydrogenase GroES-like domain FFE93_017180 PF00107 Zinc-binding dehydrogenase FFE93_017185 PF02502 Ribose/Galactose Isomerase FFE93_017190 PF12084 Protein of unknown function (DUF3561) FFE93_017200 PF00009 Elongation factor Tu GTP binding domain FFE93_017205 PF01507 Phosphoadenosine phosphosulfate reductase family FFE93_017210 PF10414 Sirohaem synthase dimerisation region FFE93_017210 PF14824 Sirohaem biosynthesis protein central FFE93_017210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FFE93_017215 PF04389 Peptidase family M28 FFE93_017220 PF01507 Phosphoadenosine phosphosulfate reductase family FFE93_017225 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FFE93_017225 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FFE93_017230 PF00667 FAD binding domain FFE93_017230 PF00175 Oxidoreductase NAD-binding domain FFE93_017230 PF00258 Flavodoxin FFE93_017235 PF01242 6-pyruvoyl tetrahydropterin synthase FFE93_017240 PF04055 Radical SAM superfamily FFE93_017245 PF00080 Copper/zinc superoxide dismutase (SODC) FFE93_017255 PF03952 Enolase, N-terminal domain FFE93_017255 PF00113 Enolase, C-terminal TIM barrel domain FFE93_017260 PF00117 Glutamine amidotransferase class-I FFE93_017260 PF06418 CTP synthase N-terminus FFE93_017265 PF03819 MazG nucleotide pyrophosphohydrolase domain FFE93_017270 PF02824 TGS domain FFE93_017270 PF04607 Region found in RelA / SpoT proteins FFE93_017270 PF13291 ACT domain FFE93_017275 PF05958 tRNA (Uracil-5-)-methyltransferase FFE93_017275 PF01938 TRAM domain FFE93_017280 PF01627 Hpt domain FFE93_017280 PF00072 Response regulator receiver domain FFE93_017280 PF00512 His Kinase A (phospho-acceptor) domain FFE93_017280 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FFE93_017280 PF00672 HAMP domain FFE93_017280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_017285 PF00595 PDZ domain FFE93_017290 PF01966 HD domain FFE93_017290 PF13286 Phosphohydrolase-associated domain FFE93_017295 PF01048 Phosphorylase superfamily FFE93_017300 PF01497 Periplasmic binding protein FFE93_017305 PF03458 UPF0126 domain FFE93_017315 PF01521 Iron-sulphur cluster biosynthesis FFE93_017320 PF00654 Voltage gated chloride channel FFE93_017325 PF00202 Aminotransferase class-III FFE93_017335 PF01032 FecCD transport family FFE93_017340 PF01497 Periplasmic binding protein FFE93_017345 PF00005 ABC transporter FFE93_017350 PF00912 Transglycosylase FFE93_017350 PF14814 Bifunctional transglycosylase second domain FFE93_017350 PF00905 Penicillin binding protein transpeptidase domain FFE93_017350 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal FFE93_017355 PF08482 ATP-dependent helicase C-terminal FFE93_017355 PF00271 Helicase conserved C-terminal domain FFE93_017355 PF04408 Helicase associated domain (HA2) FFE93_017355 PF00270 DEAD/DEAH box helicase FFE93_017360 PF02834 LigT like Phosphoesterase FFE93_017365 PF03749 Sugar fermentation stimulation protein RE domain FFE93_017365 PF17746 SfsA N-terminal OB domain FFE93_017370 PF01258 Prokaryotic dksA/traR C4-type zinc finger FFE93_017375 PF00749 tRNA synthetases class I (E and Q), catalytic domain FFE93_017380 PF12626 Polymerase A arginine-rich C-terminus FFE93_017380 PF12627 Probable RNA and SrmB- binding site of polymerase A FFE93_017380 PF01743 Poly A polymerase head domain FFE93_017385 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FFE93_017390 PF02548 Ketopantoate hydroxymethyltransferase FFE93_017395 PF02569 Pantoate-beta-alanine ligase FFE93_017400 PF02261 Aspartate decarboxylase FFE93_017405 PF01522 Polysaccharide deacetylase FFE93_017410 PF01061 ABC-2 type transporter FFE93_017415 PF00005 ABC transporter FFE93_017420 PF00484 Carbonic anhydrase FFE93_017425 PF00156 Phosphoribosyl transferase domain FFE93_017430 PF07731 Multicopper oxidase FFE93_017430 PF10518 TAT (twin-arginine translocation) pathway signal sequence FFE93_017430 PF00394 Multicopper oxidase FFE93_017430 PF07732 Multicopper oxidase FFE93_017435 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) FFE93_017440 PF17284 Spermidine synthase tetramerisation domain FFE93_017445 PF02675 S-adenosylmethionine decarboxylase FFE93_017470 PF18624 CDI immunity protein FFE93_017500 PF00892 EamA-like transporter family FFE93_017505 PF06062 Uncharacterised protein family (UPF0231) FFE93_017510 PF06434 Aconitate hydratase 2 N-terminus FFE93_017510 PF00330 Aconitase family (aconitate hydratase) FFE93_017510 PF11791 Aconitate B N-terminal domain FFE93_017515 PF07715 TonB-dependent Receptor Plug Domain FFE93_017515 PF00593 TonB dependent receptor FFE93_017520 PF12833 Helix-turn-helix domain FFE93_017520 PF02311 AraC-like ligand binding domain FFE93_017525 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFE93_017525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FFE93_017530 PF02817 e3 binding domain FFE93_017530 PF00364 Biotin-requiring enzyme FFE93_017530 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FFE93_017535 PF17831 Pyruvate dehydrogenase E1 component middle domain FFE93_017535 PF00456 Transketolase, thiamine diphosphate binding domain FFE93_017545 PF07729 FCD domain FFE93_017545 PF00392 Bacterial regulatory proteins, gntR family FFE93_017550 PF00324 Amino acid permease FFE93_017555 PF17113 Regulatory signalling modulator protein AmpE FFE93_017560 PF01510 N-acetylmuramoyl-L-alanine amidase FFE93_017565 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FFE93_017565 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FFE93_017570 PF07963 Prokaryotic N-terminal methylation motif FFE93_017575 PF00437 Type II/IV secretion system protein FFE93_017575 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FFE93_017580 PF00482 Type II secretion system (T2SS), protein F FFE93_017585 PF00478 IMP dehydrogenase / GMP reductase domain FFE93_017595 PF01121 Dephospho-CoA kinase FFE93_017600 PF07072 Cell division protein FFE93_017605 PF03884 DNA gyrase inhibitor YacG FFE93_017610 PF00293 NUDIX domain FFE93_017615 PF07517 SecA DEAD-like domain FFE93_017615 PF07516 SecA Wing and Scaffold domain FFE93_017615 PF01043 SecA preprotein cross-linking domain FFE93_017615 PF02810 SEC-C motif FFE93_017620 PF06558 Secretion monitor precursor protein (SecM) FFE93_017630 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FFE93_017635 PF12327 FtsZ family, C-terminal domain FFE93_017635 PF00091 Tubulin/FtsZ family, GTPase domain FFE93_017640 PF02491 SHS2 domain inserted in FTSA FFE93_017645 PF03799 Cell division protein FtsQ FFE93_017645 PF08478 POTRA domain, FtsQ-type FFE93_017650 PF07478 D-ala D-ala ligase C-terminus FFE93_017650 PF01820 D-ala D-ala ligase N-terminus FFE93_017655 PF02875 Mur ligase family, glutamate ligase domain FFE93_017655 PF01225 Mur ligase family, catalytic domain FFE93_017655 PF08245 Mur ligase middle domain FFE93_017660 PF04101 Glycosyltransferase family 28 C-terminal domain FFE93_017660 PF03033 Glycosyltransferase family 28 N-terminal domain FFE93_017665 PF01098 Cell cycle protein FFE93_017670 PF08245 Mur ligase middle domain FFE93_017670 PF02875 Mur ligase family, glutamate ligase domain FFE93_017675 PF00953 Glycosyl transferase family 4 FFE93_017675 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 FFE93_017680 PF08245 Mur ligase middle domain FFE93_017680 PF01225 Mur ligase family, catalytic domain FFE93_017680 PF02875 Mur ligase family, glutamate ligase domain FFE93_017685 PF02875 Mur ligase family, glutamate ligase domain FFE93_017685 PF01225 Mur ligase family, catalytic domain FFE93_017685 PF08245 Mur ligase middle domain FFE93_017690 PF03717 Penicillin-binding Protein dimerisation domain FFE93_017690 PF00905 Penicillin binding protein transpeptidase domain FFE93_017695 PF04999 Cell division protein FtsL FFE93_017700 PF01795 MraW methylase family FFE93_017705 PF02381 MraZ protein, putative antitoxin-like FFE93_017710 PF06610 L-alanine exporter FFE93_017715 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FFE93_017715 PF00356 Bacterial regulatory proteins, lacI family FFE93_017720 PF10369 Small subunit of acetolactate synthase FFE93_017725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FFE93_017725 PF00205 Thiamine pyrophosphate enzyme, central domain FFE93_017725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FFE93_017730 PF00501 AMP-binding enzyme FFE93_017735 PF03466 LysR substrate binding domain FFE93_017735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_017745 PF08502 LeuA allosteric (dimerisation) domain FFE93_017745 PF00682 HMGL-like FFE93_017750 PF00180 Isocitrate/isopropylmalate dehydrogenase FFE93_017755 PF00330 Aconitase family (aconitate hydratase) FFE93_017760 PF00694 Aconitase C-terminal domain FFE93_017765 PF07690 Major Facilitator Superfamily FFE93_017775 PF04055 Radical SAM superfamily FFE93_017780 PF12793 Sugar transport-related sRNA regulator N-term FFE93_017780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FFE93_017790 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_017795 PF00005 ABC transporter FFE93_017800 PF09335 SNARE associated Golgi protein FFE93_017805 PF03104 DNA polymerase family B, exonuclease domain FFE93_017805 PF00136 DNA polymerase family B FFE93_017810 PF00176 SNF2 family N-terminal domain FFE93_017810 PF00271 Helicase conserved C-terminal domain FFE93_017810 PF18339 RapA N-terminal Tudor like domain 1 FFE93_017810 PF18337 RapA N-terminal Tudor like domain FFE93_017810 PF12137 RNA polymerase recycling family C-terminal FFE93_017815 PF00849 RNA pseudouridylate synthase FFE93_017825 PF00226 DnaJ domain FFE93_017825 PF05099 Tellurite resistance protein TerB FFE93_017830 PF03968 OstA-like protein FFE93_017830 PF04453 LPS transport system D FFE93_017835 PF09312 SurA N-terminal domain FFE93_017835 PF00639 PPIC-type PPIASE domain FFE93_017840 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FFE93_017845 PF00398 Ribosomal RNA adenine dimethylase FFE93_017850 PF04379 ApaG domain FFE93_017855 PF00149 Calcineurin-like phosphoesterase FFE93_017860 PF00186 Dihydrofolate reductase FFE93_017865 PF12821 Threonine/Serine exporter, ThrE FFE93_017870 PF06738 Putative threonine/serine exporter FFE93_017875 PF01810 LysE type translocator FFE93_017880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FFE93_017880 PF02142 MGS-like domain FFE93_017880 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FFE93_017885 PF00117 Glutamine amidotransferase class-I FFE93_017885 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FFE93_017890 PF01113 Dihydrodipicolinate reductase, N-terminus FFE93_017890 PF05173 Dihydrodipicolinate reductase, C-terminus FFE93_017895 PF02401 LytB protein FFE93_017900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FFE93_017905 PF01252 Signal peptidase (SPase) II FFE93_017910 PF00133 tRNA synthetases class I (I, L, M and V) FFE93_017910 PF06827 Zinc finger found in FPG and IleRS FFE93_017910 PF08264 Anticodon-binding domain of tRNA FFE93_017915 PF06574 FAD synthetase FFE93_017915 PF01687 Riboflavin kinase FFE93_017930 PF01649 Ribosomal protein S20 FFE93_017935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_017935 PF03466 LysR substrate binding domain FFE93_017940 PF06965 Na+/H+ antiporter 1 FFE93_017945 PF00684 DnaJ central domain FFE93_017945 PF00226 DnaJ domain FFE93_017945 PF01556 DnaJ C terminal domain FFE93_017950 PF00012 Hsp70 protein FFE93_017955 PF01184 GPR1/FUN34/yaaH family FFE93_017965 PF07690 Major Facilitator Superfamily FFE93_017970 PF00994 Probable molybdopterin binding domain FFE93_017975 PF00923 Transaldolase/Fructose-6-phosphate aldolase FFE93_017985 PF03883 Peroxide stress protein YaaA FFE93_017990 PF14821 Threonine synthase N terminus FFE93_017990 PF00291 Pyridoxal-phosphate dependent enzyme FFE93_017995 PF08544 GHMP kinases C terminal FFE93_017995 PF00288 GHMP kinases N terminal domain FFE93_018000 PF03447 Homoserine dehydrogenase, NAD binding domain FFE93_018000 PF00742 Homoserine dehydrogenase FFE93_018000 PF13840 ACT domain FFE93_018000 PF01842 ACT domain FFE93_018000 PF00696 Amino acid kinase family FFE93_018005 PF08254 Threonine leader peptide FFE93_018010 PF00072 Response regulator receiver domain FFE93_018010 PF00486 Transcriptional regulatory protein, C terminal FFE93_018015 PF05981 CreA protein FFE93_018020 PF06445 GyrI-like small molecule binding domain FFE93_018020 PF12833 Helix-turn-helix domain FFE93_018025 PF00300 Histidine phosphatase superfamily (branch 1) FFE93_018030 PF01931 Protein of unknown function DUF84 FFE93_018035 PF01371 Trp repressor protein FFE93_018040 PF14718 Soluble lytic murein transglycosylase L domain FFE93_018040 PF01464 Transglycosylase SLT domain FFE93_018045 PF00689 Cation transporting ATPase, C-terminus FFE93_018045 PF00690 Cation transporter/ATPase, N-terminus FFE93_018055 PF00990 Diguanylate cyclase, GGDEF domain FFE93_018055 PF17152 Periplasmic sensor domain FFE93_018060 PF00691 OmpA family FFE93_018065 PF12848 ABC transporter FFE93_018065 PF00005 ABC transporter FFE93_018075 PF03466 LysR substrate binding domain FFE93_018075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_018080 PF08240 Alcohol dehydrogenase GroES-like domain FFE93_018080 PF00107 Zinc-binding dehydrogenase FFE93_018085 PF01381 Helix-turn-helix FFE93_018085 PF13521 AAA domain FFE93_018090 PF18073 Rubredoxin metal binding domain FFE93_018095 PF18429 Domain of unknown function (DUF5609) FFE93_018100 PF10144 Bacterial virulence factor haemolysin FFE93_018105 PF07804 HipA-like C-terminal domain FFE93_018110 PF01048 Phosphorylase superfamily FFE93_018115 PF01676 Metalloenzyme superfamily FFE93_018120 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain FFE93_018120 PF00591 Glycosyl transferase family, a/b domain FFE93_018120 PF02885 Glycosyl transferase family, helical bundle domain FFE93_018125 PF01791 DeoC/LacD family aldolase FFE93_018130 PF07670 Nucleoside recognition FFE93_018130 PF07662 Na+ dependent nucleoside transporter C-terminus FFE93_018130 PF01773 Na+ dependent nucleoside transporter N-terminus FFE93_018135 PF01026 TatD related DNase FFE93_018140 PF01734 Patatin-like phospholipase FFE93_018145 PF07043 Protein of unknown function (DUF1328) FFE93_018150 PF04972 BON domain FFE93_018155 PF03144 Elongation factor Tu domain 2 FFE93_018155 PF00009 Elongation factor Tu GTP binding domain FFE93_018155 PF16658 Class II release factor RF3, C-terminal domain FFE93_018160 PF00583 Acetyltransferase (GNAT) family FFE93_018165 PF03603 DNA polymerase III psi subunit FFE93_018180 PF08468 Methyltransferase small domain N-terminal FFE93_018180 PF05175 Methyltransferase small domain FFE93_018185 PF00248 Aldo/keto reductase family FFE93_018190 PF03466 LysR substrate binding domain FFE93_018190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_018210 PF07256 Protein of unknown function (DUF1435) FFE93_018215 PF00990 Diguanylate cyclase, GGDEF domain FFE93_018225 PF00294 pfkB family carbohydrate kinase FFE93_018230 PF02264 LamB porin FFE93_018230 PF11471 Maltoporin periplasmic N-terminal extension FFE93_018235 PF00367 phosphotransferase system, EIIB FFE93_018235 PF02378 Phosphotransferase system, EIIC FFE93_018240 PF08244 Glycosyl hydrolases family 32 C terminal FFE93_018240 PF00251 Glycosyl hydrolases family 32 N-terminal domain FFE93_018245 PF00356 Bacterial regulatory proteins, lacI family FFE93_018245 PF13407 Periplasmic binding protein domain FFE93_018250 PF02954 Bacterial regulatory protein, Fis family FFE93_018250 PF00989 PAS fold FFE93_018250 PF00158 Sigma-54 interaction domain FFE93_018275 PF02543 Carbamoyltransferase N-terminus FFE93_018275 PF16861 Carbamoyltransferase C-terminus FFE93_018285 PF05524 PEP-utilising enzyme, N-terminal FFE93_018285 PF00391 PEP-utilising enzyme, mobile domain FFE93_018285 PF00381 PTS HPr component phosphorylation site FFE93_018285 PF03610 PTS system fructose IIA component FFE93_018290 PF02734 DAK2 domain FFE93_018295 PF02733 Dak1 domain FFE93_018300 PF00465 Iron-containing alcohol dehydrogenase FFE93_018305 PF00873 AcrB/AcrD/AcrF family FFE93_018310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFE93_018325 PF13520 Amino acid permease FFE93_018335 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FFE93_018340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FFE93_018340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FFE93_018345 PF04198 Putative sugar-binding domain FFE93_018345 PF00325 Bacterial regulatory proteins, crp family FFE93_018355 PF00005 ABC transporter FFE93_018360 PF02653 Branched-chain amino acid transport system / permease component FFE93_018365 PF02653 Branched-chain amino acid transport system / permease component FFE93_018370 PF13407 Periplasmic binding protein domain FFE93_018375 PF01791 DeoC/LacD family aldolase FFE93_018380 PF03992 Antibiotic biosynthesis monooxygenase FFE93_018385 PF10696 Protein of unknown function (DUF2501) FFE93_018410 PF12102 Domain of unknown function (DUF3578) FFE93_018410 PF07728 AAA domain (dynein-related subfamily) FFE93_018415 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A FFE93_018420 PF06755 CbtA_toxin of type IV toxin-antitoxin system FFE93_018425 PF03230 Antirestriction protein FFE93_018430 PF06067 Domain of unknown function (DUF932) FFE93_018520 PF00005 ABC transporter FFE93_018540 PF13356 Arm DNA-binding domain FFE93_018540 PF00589 Phage integrase family FFE93_018550 PF03739 Lipopolysaccharide export system permease LptF/LptG FFE93_018555 PF03739 Lipopolysaccharide export system permease LptF/LptG FFE93_018560 PF02789 Cytosol aminopeptidase family, N-terminal domain FFE93_018560 PF00883 Cytosol aminopeptidase family, catalytic domain FFE93_018565 PF04364 DNA polymerase III chi subunit, HolC FFE93_018570 PF08264 Anticodon-binding domain of tRNA FFE93_018570 PF00133 tRNA synthetases class I (I, L, M and V) FFE93_018570 PF10458 Valyl tRNA synthetase tRNA binding arm FFE93_018575 PF00583 Acetyltransferase (GNAT) family FFE93_018580 PF06877 Regulator of ribonuclease activity B FFE93_018585 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FFE93_018585 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FFE93_018590 PF04074 YhcH/YjgK/YiaL FFE93_018600 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_018605 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_018605 PF12911 N-terminal TM domain of oligopeptide transport permease C FFE93_018610 PF00005 ABC transporter FFE93_018610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FFE93_018615 PF00005 ABC transporter FFE93_018615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FFE93_018620 PF03477 ATP cone domain FFE93_018620 PF13597 Anaerobic ribonucleoside-triphosphate reductase FFE93_018640 PF07702 UTRA domain FFE93_018640 PF00392 Bacterial regulatory proteins, gntR family FFE93_018645 PF06754 Phosphonate metabolism protein PhnG FFE93_018650 PF05845 Bacterial phosphonate metabolism protein (PhnH) FFE93_018655 PF05861 Bacterial phosphonate metabolism protein (PhnI) FFE93_018660 PF06007 Phosphonate metabolism protein PhnJ FFE93_018665 PF00005 ABC transporter FFE93_018670 PF00005 ABC transporter FFE93_018675 PF07969 Amidohydrolase family FFE93_018685 PF12706 Beta-lactamase superfamily domain FFE93_018690 PF13460 NAD(P)H-binding FFE93_018705 PF17912 MalK OB fold domain FFE93_018705 PF03459 TOBE domain FFE93_018705 PF00005 ABC transporter FFE93_018710 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_018720 PF13416 Bacterial extracellular solute-binding protein FFE93_018740 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain FFE93_018740 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain FFE93_018740 PF01276 Orn/Lys/Arg decarboxylase, major domain FFE93_018745 PF13520 Amino acid permease FFE93_018750 PF01541 GIY-YIG catalytic domain FFE93_018755 PF13508 Acetyltransferase (GNAT) domain FFE93_018775 PF00296 Luciferase-like monooxygenase FFE93_018780 PF12343 Cold shock protein DEAD box A FFE93_018780 PF00270 DEAD/DEAH box helicase FFE93_018780 PF00271 Helicase conserved C-terminal domain FFE93_018780 PF03880 DbpA RNA binding domain FFE93_018790 PF13181 Tetratricopeptide repeat FFE93_018790 PF07719 Tetratricopeptide repeat FFE93_018795 PF00575 S1 RNA binding domain FFE93_018795 PF03725 3' exoribonuclease family, domain 2 FFE93_018795 PF01138 3' exoribonuclease family, domain 1 FFE93_018795 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FFE93_018795 PF00013 KH domain FFE93_018800 PF00312 Ribosomal protein S15 FFE93_018805 PF01509 TruB family pseudouridylate synthase (N terminal domain) FFE93_018805 PF16198 tRNA pseudouridylate synthase B C-terminal domain FFE93_018805 PF09157 Pseudouridine synthase II TruB, C-terminal FFE93_018810 PF02033 Ribosome-binding factor A FFE93_018815 PF00009 Elongation factor Tu GTP binding domain FFE93_018815 PF03144 Elongation factor Tu domain 2 FFE93_018815 PF11987 Translation-initiation factor 2 FFE93_018815 PF08364 Bacterial translation initiation factor IF-2 associated region FFE93_018815 PF04760 Translation initiation factor IF-2, N-terminal region FFE93_018820 PF00575 S1 RNA binding domain FFE93_018820 PF08529 NusA N-terminal domain FFE93_018820 PF13184 NusA-like KH domain FFE93_018825 PF02576 RimP N-terminal domain FFE93_018825 PF17384 RimP C-terminal SH3 domain FFE93_018840 PF03840 Preprotein translocase SecG subunit FFE93_018845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FFE93_018845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FFE93_018845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FFE93_018845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FFE93_018850 PF00809 Pterin binding enzyme FFE93_018855 PF06480 FtsH Extracellular FFE93_018855 PF17862 AAA+ lid domain FFE93_018855 PF00004 ATPase family associated with various cellular activities (AAA) FFE93_018855 PF01434 Peptidase family M41 FFE93_018860 PF01728 FtsJ-like methyltransferase FFE93_018865 PF01985 CRS1 / YhbY (CRM) domain FFE93_018870 PF03449 Transcription elongation factor, N-terminal FFE93_018870 PF01272 Transcription elongation factor, GreA/GreB, C-term FFE93_018875 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family FFE93_018880 PF00486 Transcriptional regulatory protein, C terminal FFE93_018880 PF00072 Response regulator receiver domain FFE93_018885 PF00512 His Kinase A (phospho-acceptor) domain FFE93_018885 PF00672 HAMP domain FFE93_018885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_018890 PF01926 50S ribosome-binding GTPase FFE93_018890 PF01018 GTP1/OBG FFE93_018895 PF00892 EamA-like transporter family FFE93_018900 PF01016 Ribosomal L27 protein FFE93_018905 PF00829 Ribosomal prokaryotic L21 protein FFE93_018910 PF00348 Polyprenyl synthetase FFE93_018920 PF13693 Winged helix-turn-helix DNA-binding FFE93_018925 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FFE93_018925 PF00056 lactate/malate dehydrogenase, NAD binding domain FFE93_018930 PF01316 Arginine repressor, DNA binding domain FFE93_018930 PF02863 Arginine repressor, C-terminal domain FFE93_018940 PF01225 Mur ligase family, catalytic domain FFE93_018940 PF02875 Mur ligase family, glutamate ligase domain FFE93_018940 PF08245 Mur ligase middle domain FFE93_018945 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FFE93_018950 PF02203 Tar ligand binding domain homologue FFE93_018950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_018950 PF00672 HAMP domain FFE93_018955 PF00719 Inorganic pyrophosphatase FFE93_018960 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like FFE93_018965 PF04357 TamB, inner membrane protein subunit of TAM complex FFE93_018970 PF07244 Surface antigen variable number repeat FFE93_018970 PF01103 Surface antigen FFE93_018970 PF17243 POTRA domain TamA domain 1 FFE93_018975 PF01625 Peptide methionine sulfoxide reductase FFE93_018980 PF00571 CBS domain FFE93_018980 PF01595 Cyclin M transmembrane N-terminal domain FFE93_018980 PF03471 Transporter associated domain FFE93_018985 PF06526 Protein of unknown function (DUF1107) FFE93_018990 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) FFE93_018995 PF00459 Inositol monophosphatase family FFE93_019000 PF00149 Calcineurin-like phosphoesterase FFE93_019000 PF02872 5'-nucleotidase, C-terminal domain FFE93_019005 PF01814 Hemerythrin HHE cation binding domain FFE93_019005 PF04405 Domain of Unknown function (DUF542) FFE93_019010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FFE93_019010 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FFE93_019015 PF08525 Opacity-associated protein A N-terminal motif FFE93_019015 PF04225 Opacity-associated protein A LysM-like domain FFE93_019025 PF01281 Ribosomal protein L9, N-terminal domain FFE93_019025 PF03948 Ribosomal protein L9, C-terminal domain FFE93_019030 PF01084 Ribosomal protein S18 FFE93_019035 PF00436 Single-strand binding protein family FFE93_019040 PF01250 Ribosomal protein S6 FFE93_019050 PF07338 Protein of unknown function (DUF1471) FFE93_019055 PF00326 Prolyl oligopeptidase family FFE93_019060 PF07338 Protein of unknown function (DUF1471) FFE93_019065 PF18158 Adaptive response protein AidB N-terminal domain FFE93_019065 PF02770 Acyl-CoA dehydrogenase, middle domain FFE93_019065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FFE93_019070 PF08032 RNA 2'-O ribose methyltransferase substrate binding FFE93_019070 PF00588 SpoU rRNA Methylase family FFE93_019075 PF08206 Ribonuclease B OB domain FFE93_019075 PF00575 S1 RNA binding domain FFE93_019075 PF17876 Cold shock domain FFE93_019075 PF00773 RNB domain FFE93_019075 PF08461 Ribonuclease R winged-helix domain FFE93_019080 PF02082 Transcriptional regulator FFE93_019085 PF00709 Adenylosuccinate synthetase FFE93_019090 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) FFE93_019095 PF01145 SPFH domain / Band 7 family FFE93_019100 PF12221 Bacterial membrane protein N terminal FFE93_019100 PF01145 SPFH domain / Band 7 family FFE93_019105 PF01926 50S ribosome-binding GTPase FFE93_019105 PF13167 GTP-binding GTPase N-terminal FFE93_019105 PF16360 GTP-binding GTPase Middle Region FFE93_019110 PF17209 Hfq protein FFE93_019120 PF08676 MutL C terminal dimerisation domain FFE93_019120 PF01119 DNA mismatch repair protein, C-terminal domain FFE93_019125 PF01520 N-acetylmuramoyl-L-alanine amidase FFE93_019130 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FFE93_019135 PF03853 YjeF-related protein N-terminus FFE93_019135 PF01256 Carbohydrate kinase FFE93_019140 PF08331 Domain of unknown function (DUF1730) FFE93_019165 PF00929 Exonuclease FFE93_019170 PF03193 RsgA GTPase FFE93_019175 PF02666 Phosphatidylserine decarboxylase FFE93_019180 PF12795 Mechanosensitive ion channel porin domain FFE93_019180 PF12794 Mechanosensitive ion channel inner membrane domain 1 FFE93_019180 PF00924 Mechanosensitive ion channel FFE93_019185 PF00152 tRNA synthetases class II (D, K and N) FFE93_019190 PF02910 Fumarate reductase flavoprotein C-term FFE93_019190 PF00890 FAD binding domain FFE93_019195 PF13183 4Fe-4S dicluster domain FFE93_019195 PF13085 2Fe-2S iron-sulfur cluster binding domain FFE93_019200 PF02300 Fumarate reductase subunit C FFE93_019205 PF02313 Fumarate reductase subunit D FFE93_019210 PF08212 Lipocalin-like domain FFE93_019215 PF00893 Small Multidrug Resistance protein FFE93_019220 PF08085 Entericidin EcnA/B family FFE93_019225 PF08207 Elongation factor P (EF-P) KOW-like domain FFE93_019225 PF01132 Elongation factor P (EF-P) OB domain FFE93_019225 PF09285 Elongation factor P, C-terminal FFE93_019230 PF04055 Radical SAM superfamily FFE93_019235 PF13698 Domain of unknown function (DUF4156) FFE93_019240 PF00118 TCP-1/cpn60 chaperonin family FFE93_019245 PF00166 Chaperonin 10 Kd subunit FFE93_019250 PF04186 FxsA cytoplasmic membrane protein FFE93_019255 PF00206 Lyase FFE93_019255 PF10415 Fumarase C C-terminus FFE93_019260 PF03605 Anaerobic c4-dicarboxylate membrane transporter FFE93_019265 PF03091 CutA1 divalent ion tolerance protein FFE93_019270 PF02683 Cytochrome C biogenesis protein transmembrane region FFE93_019270 PF11412 Disulphide bond corrector protein DsbC FFE93_019275 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FFE93_019275 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFE93_019275 PF13247 4Fe-4S dicluster domain FFE93_019280 PF07690 Major Facilitator Superfamily FFE93_019285 PF08666 SAF domain FFE93_019285 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus FFE93_019290 PF05651 Putative sugar diacid recognition FFE93_019290 PF17853 GGDEF-like domain FFE93_019290 PF13556 PucR C-terminal helix-turn-helix domain FFE93_019295 PF02595 Glycerate kinase family FFE93_019300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FFE93_019300 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FFE93_019305 PF03328 HpcH/HpaI aldolase/citrate lyase family FFE93_019325 PF10609 NUBPL iron-transfer P-loop NTPase FFE93_019330 PF03552 Cellulose synthase FFE93_019330 PF00535 Glycosyl transferase family 2 FFE93_019330 PF07238 PilZ domain FFE93_019335 PF03170 Bacterial cellulose synthase subunit FFE93_019340 PF13181 Tetratricopeptide repeat FFE93_019340 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) FFE93_019350 PF01270 Glycosyl hydrolases family 8 FFE93_019355 PF04055 Radical SAM superfamily FFE93_019360 PF10636 Hemin uptake protein hemP FFE93_019365 PF00593 TonB dependent receptor FFE93_019365 PF07715 TonB-dependent Receptor Plug Domain FFE93_019370 PF05171 Haemin-degrading HemS.ChuX domain FFE93_019375 PF01497 Periplasmic binding protein FFE93_019380 PF01032 FecCD transport family FFE93_019385 PF00005 ABC transporter FFE93_019390 PF00392 Bacterial regulatory proteins, gntR family FFE93_019390 PF00155 Aminotransferase class I and II FFE93_019400 PF07715 TonB-dependent Receptor Plug Domain FFE93_019400 PF00593 TonB dependent receptor FFE93_019405 PF12794 Mechanosensitive ion channel inner membrane domain 1 FFE93_019405 PF12795 Mechanosensitive ion channel porin domain FFE93_019405 PF00924 Mechanosensitive ion channel FFE93_019415 PF00675 Insulinase (Peptidase family M16) FFE93_019415 PF05193 Peptidase M16 inactive domain FFE93_019420 PF00005 ABC transporter FFE93_019420 PF06472 ABC transporter transmembrane region 2 FFE93_019425 PF07715 TonB-dependent Receptor Plug Domain FFE93_019430 PF04773 FecR protein FFE93_019430 PF16220 Domain of unknown function (DUF4880) FFE93_019435 PF04542 Sigma-70 region 2 FFE93_019435 PF04539 Sigma-70 region 3 FFE93_019435 PF04545 Sigma-70, region 4 FFE93_019445 PF01206 Sulfurtransferase TusA FFE93_019450 PF04143 Sulphur transport FFE93_019455 PF01312 FlhB HrpN YscU SpaS Family FFE93_019460 PF01311 Bacterial export proteins, family 1 FFE93_019465 PF01313 Bacterial export proteins, family 3 FFE93_019470 PF00813 FliP family FFE93_019490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFE93_019490 PF18269 T3SS EscN ATPase C-terminal domain FFE93_019495 PF00771 FHIPEP family FFE93_019505 PF07201 HrpJ-like domain FFE93_019520 PF01514 Secretory protein of YscJ/FliF family FFE93_019540 PF14525 AraC-binding-like domain FFE93_019540 PF12833 Helix-turn-helix domain FFE93_019565 PF04888 Secretion system effector C (SseC) like family FFE93_019575 PF03433 EspA-like secreted protein FFE93_019605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_019605 PF01627 Hpt domain FFE93_019605 PF00672 HAMP domain FFE93_019605 PF00512 His Kinase A (phospho-acceptor) domain FFE93_019605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FFE93_019605 PF00072 Response regulator receiver domain FFE93_019610 PF00072 Response regulator receiver domain FFE93_019610 PF00196 Bacterial regulatory proteins, luxR family FFE93_019615 PF00375 Sodium:dicarboxylate symporter family FFE93_019620 PF13193 AMP-binding enzyme C-terminal domain FFE93_019620 PF00501 AMP-binding enzyme FFE93_019620 PF16177 Acetyl-coenzyme A synthetase N-terminus FFE93_019625 PF04341 Protein of unknown function, DUF485 FFE93_019630 PF00474 Sodium:solute symporter family FFE93_019670 PF12724 Flavodoxin domain FFE93_019675 PF02386 Cation transport protein FFE93_019685 PF00557 Metallopeptidase family M24 FFE93_019690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FFE93_019690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FFE93_019690 PF00378 Enoyl-CoA hydratase/isomerase FFE93_019695 PF00108 Thiolase, N-terminal domain FFE93_019695 PF02803 Thiolase, C-terminal domain FFE93_019700 PF00970 Oxidoreductase FAD-binding domain FFE93_019700 PF00175 Oxidoreductase NAD-binding domain FFE93_019705 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase FFE93_019710 PF02357 Transcription termination factor nusG FFE93_019715 PF00490 Delta-aminolevulinic acid dehydratase FFE93_019720 PF01026 TatD related DNase FFE93_019725 PF00902 Sec-independent protein translocase protein (TatC) FFE93_019735 PF02416 mttA/Hcf106 family FFE93_019740 PF03109 ABC1 family FFE93_019745 PF02036 SCP-2 sterol transfer family FFE93_019750 PF01209 ubiE/COQ5 methyltransferase family FFE93_019755 PF02646 RmuC family FFE93_019760 PF09335 SNARE associated Golgi protein FFE93_019765 PF02554 Carbon starvation protein CstA FFE93_019765 PF13722 5TM C-terminal transporter carbon starvation CstA FFE93_019775 PF01048 Phosphorylase superfamily FFE93_019780 PF01738 Dienelactone hydrolase family FFE93_019790 PF01717 Cobalamin-independent synthase, Catalytic domain FFE93_019790 PF08267 Cobalamin-independent synthase, N-terminal domain FFE93_019795 PF03466 LysR substrate binding domain FFE93_019795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_019800 PF00892 EamA-like transporter family FFE93_019805 PF03547 Membrane transport protein FFE93_019810 PF03009 Glycerophosphoryl diester phosphodiesterase family FFE93_019815 PF00005 ABC transporter FFE93_019815 PF17912 MalK OB fold domain FFE93_019820 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_019825 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_019830 PF13416 Bacterial extracellular solute-binding protein FFE93_019870 PF00005 ABC transporter FFE93_019875 PF12399 Branched-chain amino acid ATP-binding cassette transporter FFE93_019875 PF00005 ABC transporter FFE93_019880 PF02653 Branched-chain amino acid transport system / permease component FFE93_019880 PF11862 Domain of unknown function (DUF3382) FFE93_019885 PF02653 Branched-chain amino acid transport system / permease component FFE93_019890 PF13458 Periplasmic binding protein FFE93_019895 PF12568 Acetyltransferase (GNAT) domain, PanZ FFE93_019900 PF00140 Sigma-70 factor, region 1.2 FFE93_019900 PF04545 Sigma-70, region 4 FFE93_019900 PF04542 Sigma-70 region 2 FFE93_019905 PF02687 FtsX-like permease family FFE93_019905 PF18075 FtsX extracellular domain FFE93_019910 PF00005 ABC transporter FFE93_019915 PF00448 SRP54-type protein, GTPase domain FFE93_019915 PF02881 SRP54-type protein, helical bundle domain FFE93_019925 PF06611 Protein of unknown function (DUF1145) FFE93_019940 PF07947 YhhN family FFE93_019945 PF00403 Heavy-metal-associated domain FFE93_019950 PF01206 Sulfurtransferase TusA FFE93_019955 PF02592 Putative vitamin uptake transporter FFE93_019960 PF08786 DcrB FFE93_019965 PF13183 4Fe-4S dicluster domain FFE93_019965 PF02754 Cysteine-rich domain FFE93_019970 PF00890 FAD binding domain FFE93_019975 PF01266 FAD dependent oxidoreductase FFE93_019975 PF04324 BFD-like [2Fe-2S] binding domain FFE93_019980 PF07690 Major Facilitator Superfamily FFE93_019985 PF03009 Glycerophosphoryl diester phosphodiesterase family FFE93_019995 PF12146 Serine aminopeptidase, S33 FFE93_020000 PF01810 LysE type translocator FFE93_020005 PF01810 LysE type translocator FFE93_020010 PF00570 HRDC domain FFE93_020010 PF00270 DEAD/DEAH box helicase FFE93_020010 PF00271 Helicase conserved C-terminal domain FFE93_020010 PF09382 RQC domain FFE93_020010 PF16124 RecQ zinc-binding FFE93_020015 PF02253 Phospholipase A1 FFE93_020020 PF03061 Thioesterase superfamily FFE93_020025 PF00892 EamA-like transporter family FFE93_020030 PF01544 CorA-like Mg2+ transporter protein FFE93_020040 PF09370 Phosphoenolpyruvate hydrolase-like FFE93_020055 PF00580 UvrD/REP helicase N-terminal domain FFE93_020055 PF13361 UvrD-like helicase C-terminal domain FFE93_020060 PF13419 Haloacid dehalogenase-like hydrolase FFE93_020065 PF00589 Phage integrase family FFE93_020065 PF02899 Phage integrase, N-terminal SAM-like domain FFE93_020070 PF04340 Protein of unknown function, DUF484 FFE93_020075 PF01678 Diaminopimelate epimerase FFE93_020080 PF13627 Prokaryotic lipoprotein-attachment site FFE93_020085 PF01491 Frataxin-like domain FFE93_020090 PF01295 Adenylate cyclase, class-I FFE93_020090 PF12633 Adenylate cyclase NT domain FFE93_020095 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FFE93_020095 PF03900 Porphobilinogen deaminase, C-terminal domain FFE93_020100 PF02602 Uroporphyrinogen-III synthase HemD FFE93_020105 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase FFE93_020110 PF07719 Tetratricopeptide repeat FFE93_020110 PF07219 HemY protein N-terminus FFE93_020135 PF00324 Amino acid permease FFE93_020140 PF03808 Glycosyl transferase WecB/TagA/CpsF family FFE93_020145 PF06899 WzyE protein, O-antigen assembly polymerase FFE93_020150 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 FFE93_020155 PF01943 Polysaccharide biosynthesis protein FFE93_020160 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FFE93_020170 PF00483 Nucleotidyl transferase FFE93_020175 PF16363 GDP-mannose 4,6 dehydratase FFE93_020180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FFE93_020180 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FFE93_020180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FFE93_020185 PF02350 UDP-N-acetylglucosamine 2-epimerase FFE93_020190 PF02706 Chain length determinant protein FFE93_020195 PF00953 Glycosyl transferase family 4 FFE93_020200 PF07498 Rho termination factor, N-terminal domain FFE93_020200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFE93_020200 PF07497 Rho termination factor, RNA-binding domain FFE93_020205 PF00085 Thioredoxin FFE93_020210 PF00271 Helicase conserved C-terminal domain FFE93_020210 PF00270 DEAD/DEAH box helicase FFE93_020215 PF02541 Ppx/GppA phosphatase family FFE93_020220 PF00295 Glycosyl hydrolases family 28 FFE93_020225 PF00580 UvrD/REP helicase N-terminal domain FFE93_020225 PF13361 UvrD-like helicase C-terminal domain FFE93_020240 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FFE93_020240 PF02753 Pili assembly chaperone PapD, C-terminal domain FFE93_020245 PF13953 PapC C-terminal domain FFE93_020245 PF00577 Outer membrane usher protein FFE93_020245 PF13954 PapC N-terminal domain FFE93_020255 PF02753 Pili assembly chaperone PapD, C-terminal domain FFE93_020255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FFE93_020275 PF01320 Colicin immunity protein / pyocin immunity protein FFE93_020285 PF01320 Colicin immunity protein / pyocin immunity protein FFE93_020295 PF01320 Colicin immunity protein / pyocin immunity protein FFE93_020305 PF01320 Colicin immunity protein / pyocin immunity protein FFE93_020310 PF06958 S-type Pyocin FFE93_020315 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FFE93_020315 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FFE93_020320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_020320 PF03466 LysR substrate binding domain FFE93_020335 PF00291 Pyridoxal-phosphate dependent enzyme FFE93_020335 PF00585 C-terminal regulatory domain of Threonine dehydratase FFE93_020340 PF00920 Dehydratase family FFE93_020345 PF01063 Amino-transferase class IV FFE93_020355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FFE93_020355 PF00205 Thiamine pyrophosphate enzyme, central domain FFE93_020355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FFE93_020360 PF08046 IlvGEDA operon leader peptide FFE93_020370 PF01078 Magnesium chelatase, subunit ChlI FFE93_020370 PF13335 Magnesium chelatase, subunit ChlI C-terminal FFE93_020375 PF04219 Protein of unknown function, DUF FFE93_020380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_020380 PF03466 LysR substrate binding domain FFE93_020385 PF02653 Branched-chain amino acid transport system / permease component FFE93_020390 PF02653 Branched-chain amino acid transport system / permease component FFE93_020395 PF00005 ABC transporter FFE93_020400 PF13407 Periplasmic binding protein domain FFE93_020440 PF01177 Asp/Glu/Hydantoin racemase FFE93_020445 PF00593 TonB dependent receptor FFE93_020445 PF07715 TonB-dependent Receptor Plug Domain FFE93_020450 PF05958 tRNA (Uracil-5-)-methyltransferase FFE93_020455 PF07226 Protein of unknown function (DUF1422) FFE93_020460 PF00440 Bacterial regulatory proteins, tetR family FFE93_020465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FFE93_020465 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFE93_020470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FFE93_020470 PF03466 LysR substrate binding domain FFE93_020475 PF08534 Redoxin FFE93_020475 PF00462 Glutaredoxin FFE93_020480 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFE93_020480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FFE93_020490 PF00529 HlyD membrane-fusion protein of T1SS FFE93_020495 PF00664 ABC transporter transmembrane region FFE93_020495 PF00005 ABC transporter FFE93_020510 PF07715 TonB-dependent Receptor Plug Domain FFE93_020510 PF00593 TonB dependent receptor FFE93_020515 PF00206 Lyase FFE93_020515 PF14698 Argininosuccinate lyase C-terminal FFE93_020520 PF00696 Amino acid kinase family FFE93_020525 PF01118 Semialdehyde dehydrogenase, NAD binding domain FFE93_020525 PF02774 Semialdehyde dehydrogenase, dimerisation domain FFE93_020530 PF07687 Peptidase dimerisation domain FFE93_020530 PF01546 Peptidase family M20/M25/M40 FFE93_020535 PF00311 Phosphoenolpyruvate carboxylase FFE93_020540 PF00175 Oxidoreductase NAD-binding domain FFE93_020540 PF00970 Oxidoreductase FAD-binding domain FFE93_020545 PF07690 Major Facilitator Superfamily FFE93_020550 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded FFE93_020555 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FFE93_020555 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FFE93_020560 PF00230 Major intrinsic protein FFE93_020570 PF06005 Cell division protein ZapB FFE93_020575 PF03737 Aldolase/RraA FFE93_020580 PF01040 UbiA prenyltransferase family FFE93_020585 PF07724 AAA domain (Cdc48 subfamily) FFE93_020585 PF00004 ATPase family associated with various cellular activities (AAA) FFE93_020585 PF10431 C-terminal, D2-small domain, of ClpB protein FFE93_020590 PF00227 Proteasome subunit FFE93_020595 PF05036 Sporulation related domain FFE93_020600 PF00356 Bacterial regulatory proteins, lacI family FFE93_020605 PF18074 Primosomal protein N C-terminal domain FFE93_020605 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FFE93_020605 PF17764 3′ DNA-binding domain (3′BD) FFE93_020605 PF00271 Helicase conserved C-terminal domain FFE93_020605 PF00270 DEAD/DEAH box helicase FFE93_020615 PF01197 Ribosomal protein L31 FFE93_020620 PF01340 Met Apo-repressor, MetJ FFE93_020625 PF01053 Cys/Met metabolism PLP-dependent enzyme FFE93_020630 PF00696 Amino acid kinase family FFE93_020630 PF00742 Homoserine dehydrogenase FFE93_020630 PF03447 Homoserine dehydrogenase, NAD binding domain FFE93_020635 PF02219 Methylenetetrahydrofolate reductase FFE93_020640 PF05656 Protein of unknown function (DUF805) FFE93_020645 PF07305 Protein of unknown function (DUF1454) FFE93_020650 PF00121 Triosephosphate isomerase FFE93_020665 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FFE93_020670 PF00365 Phosphofructokinase FFE93_020675 PF16916 Dimerisation domain of Zinc Transporter FFE93_020675 PF01545 Cation efflux family FFE93_020680 PF07813 LTXXQ motif family protein FFE93_020685 PF00072 Response regulator receiver domain FFE93_020685 PF00486 Transcriptional regulatory protein, C terminal FFE93_020690 PF16527 Two-component sensor protein CpxA, periplasmic domain FFE93_020690 PF00672 HAMP domain FFE93_020690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_020690 PF00512 His Kinase A (phospho-acceptor) domain FFE93_020695 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FFE93_020695 PF12833 Helix-turn-helix domain FFE93_020695 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FFE93_020695 PF02805 Metal binding domain of Ada FFE93_020700 PF00588 SpoU rRNA Methylase family FFE93_020705 PF06426 Serine acetyltransferase, N-terminal FFE93_020705 PF00132 Bacterial transferase hexapeptide (six repeats) FFE93_020710 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FFE93_020710 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FFE93_020715 PF02556 Preprotein translocase subunit SecB FFE93_020720 PF00462 Glutaredoxin FFE93_020725 PF00581 Rhodanese-like domain FFE93_020730 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FFE93_020730 PF01676 Metalloenzyme superfamily FFE93_020735 PF01551 Peptidase family M23 FFE93_020740 PF04748 Divergent polysaccharide deacetylase FFE93_020745 PF08240 Alcohol dehydrogenase GroES-like domain FFE93_020745 PF00107 Zinc-binding dehydrogenase FFE93_020750 PF00155 Aminotransferase class I and II FFE93_020755 PF01370 NAD dependent epimerase/dehydratase family FFE93_020760 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FFE93_020765 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FFE93_020770 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FFE93_020775 PF00535 Glycosyl transferase family 2 FFE93_020780 PF01467 Cytidylyltransferase-like FFE93_020785 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FFE93_020785 PF06827 Zinc finger found in FPG and IleRS FFE93_020785 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FFE93_020790 PF00471 Ribosomal protein L33 FFE93_020795 PF00830 Ribosomal L28 family FFE93_020805 PF04002 RadC-like JAB domain FFE93_020810 PF02441 Flavoprotein FFE93_020810 PF04127 DNA / pantothenate metabolism flavoprotein FFE93_020815 PF00692 dUTPase FFE93_020820 PF00440 Bacterial regulatory proteins, tetR family FFE93_020825 PF06917 Periplasmic pectate lyase FFE93_020830 PF06178 Oligogalacturonate-specific porin protein (KdgM) FFE93_020835 PF00563 EAL domain FFE93_020835 PF17154 Gammaproteobacterial periplasmic sensor domain FFE93_020835 PF00990 Diguanylate cyclase, GGDEF domain FFE93_020835 PF00672 HAMP domain FFE93_020840 PF00005 ABC transporter FFE93_020840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FFE93_020845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FFE93_020845 PF00005 ABC transporter FFE93_020850 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_020850 PF12911 N-terminal TM domain of oligopeptide transport permease C FFE93_020855 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_020860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FFE93_020865 PF05860 haemagglutination activity domain FFE93_020865 PF13018 Extended Signal Peptide of Type V secretion system FFE93_020865 PF04829 Pre-toxin domain with VENN motif FFE93_020865 PF13332 Hemagglutinin repeat FFE93_020870 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FFE93_020870 PF17287 POTRA domain FFE93_020870 PF08479 POTRA domain, ShlB-type FFE93_020880 PF07690 Major Facilitator Superfamily FFE93_020885 PF05231 MASE1 FFE93_020885 PF07730 Histidine kinase FFE93_020885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_020890 PF00072 Response regulator receiver domain FFE93_020890 PF00196 Bacterial regulatory proteins, luxR family FFE93_020895 PF00884 Sulfatase FFE93_020895 PF08019 Phosphoethanolamine transferase EptA/EptB FFE93_020900 PF02566 OsmC-like protein FFE93_020905 PF12146 Serine aminopeptidase, S33 FFE93_020910 PF00324 Amino acid permease FFE93_020915 PF00221 Aromatic amino acid lyase FFE93_020920 PF01175 Urocanase Rossmann-like domain FFE93_020920 PF17391 Urocanase N-terminal domain FFE93_020920 PF17392 Urocanase C-terminal domain FFE93_020925 PF13426 PAS domain FFE93_020925 PF00563 EAL domain FFE93_020925 PF00990 Diguanylate cyclase, GGDEF domain FFE93_020930 PF00378 Enoyl-CoA hydratase/isomerase FFE93_020935 PF01773 Na+ dependent nucleoside transporter N-terminus FFE93_020935 PF07670 Nucleoside recognition FFE93_020935 PF07662 Na+ dependent nucleoside transporter C-terminus FFE93_020945 PF03458 UPF0126 domain FFE93_020950 PF01653 NAD-dependent DNA ligase adenylation domain FFE93_020950 PF03120 NAD-dependent DNA ligase OB-fold domain FFE93_020960 PF00625 Guanylate kinase FFE93_020965 PF01192 RNA polymerase Rpb6 FFE93_020970 PF02824 TGS domain FFE93_020970 PF04607 Region found in RelA / SpoT proteins FFE93_020970 PF13291 ACT domain FFE93_020975 PF12105 SpoU, rRNA methylase, C-terminal FFE93_020975 PF00588 SpoU rRNA Methylase family FFE93_020980 PF00271 Helicase conserved C-terminal domain FFE93_020980 PF17191 RecG wedge domain FFE93_020980 PF00270 DEAD/DEAH box helicase FFE93_020985 PF03616 Sodium/glutamate symporter FFE93_020990 PF00860 Permease family FFE93_020995 PF05170 AsmA family FFE93_021010 PF00196 Bacterial regulatory proteins, luxR family FFE93_021020 PF00196 Bacterial regulatory proteins, luxR family FFE93_021030 PF13693 Winged helix-turn-helix DNA-binding FFE93_021045 PF00072 Response regulator receiver domain FFE93_021045 PF02954 Bacterial regulatory protein, Fis family FFE93_021045 PF00158 Sigma-54 interaction domain FFE93_021050 PF09500 Putative thioesterase (yiiD_Cterm) FFE93_021050 PF00583 Acetyltransferase (GNAT) family FFE93_021055 PF02580 D-Tyr-tRNA(Tyr) deacylase FFE93_021060 PF03631 Virulence factor BrkB FFE93_021065 PF13419 Haloacid dehalogenase-like hydrolase FFE93_021075 PF03951 Glutamine synthetase, beta-Grasp domain FFE93_021075 PF00120 Glutamine synthetase, catalytic domain FFE93_021080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_021080 PF00989 PAS fold FFE93_021080 PF00512 His Kinase A (phospho-acceptor) domain FFE93_021085 PF00158 Sigma-54 interaction domain FFE93_021085 PF02954 Bacterial regulatory protein, Fis family FFE93_021085 PF00072 Response regulator receiver domain FFE93_021090 PF04055 Radical SAM superfamily FFE93_021090 PF06969 HemN C-terminal domain FFE93_021100 PF04220 Der GTPase activator (YihI) FFE93_021110 PF01926 50S ribosome-binding GTPase FFE93_021115 PF01612 3'-5' exonuclease FFE93_021115 PF00476 DNA polymerase family A FFE93_021115 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FFE93_021115 PF01367 5'-3' exonuclease, C-terminal SAM fold FFE93_021120 PF01323 DSBA-like thioredoxin domain FFE93_021125 PF01636 Phosphotransferase enzyme family FFE93_021130 PF06288 Protein of unknown function (DUF1040) FFE93_021135 PF12804 MobA-like NTP transferase domain FFE93_021140 PF03205 Molybdopterin guanine dinucleotide synthesis protein B FFE93_021170 PF00392 Bacterial regulatory proteins, gntR family FFE93_021170 PF07729 FCD domain FFE93_021175 PF07690 Major Facilitator Superfamily FFE93_021180 PF00356 Bacterial regulatory proteins, lacI family FFE93_021185 PF00294 pfkB family carbohydrate kinase FFE93_021190 PF13407 Periplasmic binding protein domain FFE93_021195 PF02653 Branched-chain amino acid transport system / permease component FFE93_021200 PF00005 ABC transporter FFE93_021205 PF05025 RbsD / FucU transport protein family FFE93_021210 PF02705 K+ potassium transporter FFE93_021215 PF12592 Protein of unknown function (DUF3763) FFE93_021215 PF07728 AAA domain (dynein-related subfamily) FFE93_021215 PF17868 AAA lid domain FFE93_021220 PF05762 VWA domain containing CoxE-like protein FFE93_021230 PF03590 Aspartate-ammonia ligase FFE93_021235 PF01037 Lrp/AsnC ligand binding domain FFE93_021240 PF00258 Flavodoxin FFE93_021245 PF13932 GidA associated domain FFE93_021245 PF01134 Glucose inhibited division protein A FFE93_021250 PF02527 rRNA small subunit methyltransferase G FFE93_021255 PF03899 ATP synthase I chain FFE93_021260 PF00119 ATP synthase A chain FFE93_021265 PF00137 ATP synthase subunit C FFE93_021270 PF00430 ATP synthase B/B' CF(0) FFE93_021275 PF00213 ATP synthase delta (OSCP) subunit FFE93_021280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFE93_021280 PF00306 ATP synthase alpha/beta chain, C terminal domain FFE93_021280 PF02874 ATP synthase alpha/beta family, beta-barrel domain FFE93_021285 PF00231 ATP synthase FFE93_021290 PF02874 ATP synthase alpha/beta family, beta-barrel domain FFE93_021290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFE93_021295 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain FFE93_021295 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FFE93_021300 PF12804 MobA-like NTP transferase domain FFE93_021300 PF00132 Bacterial transferase hexapeptide (six repeats) FFE93_021305 PF01380 SIS domain FFE93_021310 PF00916 Sulfate permease family FFE93_021310 PF01740 STAS domain FFE93_021315 PF12849 PBP superfamily domain FFE93_021320 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_021325 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_021330 PF00005 ABC transporter FFE93_021335 PF01895 PhoU domain FFE93_021345 PF00497 Bacterial extracellular solute-binding proteins, family 3 FFE93_021350 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_021355 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_021360 PF13419 Haloacid dehalogenase-like hydrolase FFE93_021365 PF00860 Permease family FFE93_021375 PF00072 Response regulator receiver domain FFE93_021375 PF00196 Bacterial regulatory proteins, luxR family FFE93_021380 PF00989 PAS fold FFE93_021380 PF00512 His Kinase A (phospho-acceptor) domain FFE93_021380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFE93_021385 PF03358 NADPH-dependent FMN reductase FFE93_021390 PF02203 Tar ligand binding domain homologue FFE93_021390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFE93_021390 PF00672 HAMP domain FFE93_021395 PF00528 Binding-protein-dependent transport system inner membrane component FFE93_021400 PF09383 NIL domain FFE93_021400 PF00005 ABC transporter FFE93_021410 PF12241 Trans-2-enoyl-CoA reductase catalytic region FFE93_021410 PF07055 Enoyl reductase FAD binding domain FFE93_021410 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FFE93_021415 PF01926 50S ribosome-binding GTPase FFE93_021415 PF12631 MnmE helical domain FFE93_021415 PF10396 GTP-binding protein TrmE N-terminus FFE93_021420 PF14849 YidC periplasmic domain FFE93_021420 PF02096 60Kd inner membrane protein FFE93_021425 PF01809 Putative membrane protein insertion efficiency factor FFE93_021430 PF00825 Ribonuclease P FFE93_021435 PF00468 Ribosomal protein L34