locus-tag class description A254_00001 PF11638 DnaA N-terminal domain A254_00001 PF08299 Bacterial dnaA protein helix-turn-helix A254_00001 PF00308 Bacterial dnaA protein A254_00002 PF12848 ABC transporter A254_00002 PF00005 ABC transporter A254_00003 PF00691 OmpA family A254_00004 PF03928 Haem-degrading A254_00005 PF01027 Inhibitor of apoptosis-promoting Bax1 A254_00006 PF01738 Dienelactone hydrolase family A254_00007 PF00994 Probable molybdopterin binding domain A254_00007 PF18146 Damage-inducible protein CinA KH domain A254_00007 PF02464 Competence-damaged protein A254_00008 PF00557 Metallopeptidase family M24 A254_00009 PF01212 Beta-eliminating lyase A254_00011 PF01433 Peptidase family M1 domain A254_00011 PF17432 Domain of unknown function (DUF3458_C) ARM repeats A254_00011 PF11940 Domain of unknown function (DUF3458) Ig-like fold A254_00012 PF00248 Aldo/keto reductase family A254_00014 PF04228 Putative neutral zinc metallopeptidase A254_00016 PF01810 LysE type translocator A254_00017 PF17954 Quercetinase C-terminal cupin domain A254_00017 PF02678 Pirin A254_00018 PF03466 LysR substrate binding domain A254_00018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A254_00019 PF03358 NADPH-dependent FMN reductase A254_00020 PF04264 YceI-like domain A254_00021 PF00924 Mechanosensitive ion channel A254_00022 PF01513 ATP-NAD kinase A254_00023 PF08032 RNA 2'-O ribose methyltransferase substrate binding A254_00023 PF00588 SpoU rRNA Methylase family A254_00024 PF00381 PTS HPr component phosphorylation site A254_00025 PF03830 PTS system sorbose subfamily IIB component A254_00025 PF03610 PTS system fructose IIA component A254_00026 PF03668 P-loop ATPase protein family A254_00027 PF02603 HPr Serine kinase N terminus A254_00027 PF07475 HPr Serine kinase C-terminal domain A254_00028 PF00512 His Kinase A (phospho-acceptor) domain A254_00028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00028 PF00672 HAMP domain A254_00028 PF13755 Sensor N-terminal transmembrane domain A254_00028 PF13756 Stimulus-sensing domain A254_00029 PF00072 Response regulator receiver domain A254_00029 PF00486 Transcriptional regulatory protein, C terminal A254_00030 PF00571 CBS domain A254_00030 PF00478 IMP dehydrogenase / GMP reductase domain A254_00031 PF01189 16S rRNA methyltransferase RsmB/F A254_00031 PF01029 NusB family A254_00035 PF01943 Polysaccharide biosynthesis protein A254_00037 PF00398 Ribosomal RNA adenine dimethylase A254_00038 PF04166 Pyridoxal phosphate biosynthetic protein PdxA A254_00039 PF09312 SurA N-terminal domain A254_00039 PF00639 PPIC-type PPIASE domain A254_00040 PF04453 LPS transport system D A254_00041 PF00883 Cytosol aminopeptidase family, catalytic domain A254_00041 PF02789 Cytosol aminopeptidase family, N-terminal domain A254_00043 PF05683 Fumarase C-terminus A254_00043 PF05681 Fumarate hydratase (Fumerase) A254_00044 PF01479 S4 domain A254_00044 PF01728 FtsJ-like methyltransferase A254_00047 PF14748 Pyrroline-5-carboxylate reductase dimerisation A254_00047 PF03807 NADP oxidoreductase coenzyme F420-dependent A254_00048 PF03099 Biotin/lipoate A/B protein ligase family A254_00049 PF00593 TonB dependent receptor A254_00049 PF07715 TonB-dependent Receptor Plug Domain A254_00052 PF13580 SIS domain A254_00055 PF04226 Transglycosylase associated protein A254_00056 PF07690 Major Facilitator Superfamily A254_00058 PF00732 GMC oxidoreductase A254_00058 PF05199 GMC oxidoreductase A254_00059 PF00034 Cytochrome c A254_00059 PF13442 Cytochrome C oxidase, cbb3-type, subunit III A254_00060 PF00356 Bacterial regulatory proteins, lacI family A254_00061 PF00550 Phosphopantetheine attachment site A254_00062 PF00109 Beta-ketoacyl synthase, N-terminal domain A254_00062 PF02801 Beta-ketoacyl synthase, C-terminal domain A254_00063 PF02618 YceG-like family A254_00065 PF00291 Pyridoxal-phosphate dependent enzyme A254_00065 PF13291 ACT domain A254_00067 PF00171 Aldehyde dehydrogenase family A254_00068 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A254_00068 PF14824 Sirohaem biosynthesis protein central A254_00068 PF10414 Sirohaem synthase dimerisation region A254_00069 PF00155 Aminotransferase class I and II A254_00072 PF02540 NAD synthase A254_00072 PF00958 GMP synthase C terminal domain A254_00072 PF00117 Glutamine amidotransferase class-I A254_00074 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain A254_00074 PF13378 Enolase C-terminal domain-like A254_00075 PF00005 ABC transporter A254_00076 PF00528 Binding-protein-dependent transport system inner membrane component A254_00077 PF09084 NMT1/THI5 like A254_00078 PF07715 TonB-dependent Receptor Plug Domain A254_00078 PF00593 TonB dependent receptor A254_00079 PF01578 Cytochrome C assembly protein A254_00081 PF03100 CcmE A254_00082 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal A254_00082 PF01578 Cytochrome C assembly protein A254_00083 PF08534 Redoxin A254_00084 PF03918 Cytochrome C biogenesis protein A254_00089 PF00444 Ribosomal protein L36 A254_00090 PF13590 Domain of unknown function (DUF4136) A254_00091 PF18027 Cytosolic carboxypeptidase N-terminal domain A254_00091 PF00246 Zinc carboxypeptidase A254_00092 PF00300 Histidine phosphatase superfamily (branch 1) A254_00093 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A254_00093 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A254_00094 PF00107 Zinc-binding dehydrogenase A254_00094 PF08240 Alcohol dehydrogenase GroES-like domain A254_00096 PF13292 1-deoxy-D-xylulose-5-phosphate synthase A254_00096 PF02779 Transketolase, pyrimidine binding domain A254_00096 PF02780 Transketolase, C-terminal domain A254_00097 PF01050 Mannose-6-phosphate isomerase A254_00097 PF00483 Nucleotidyl transferase A254_00099 PF01061 ABC-2 type transporter A254_00100 PF00534 Glycosyl transferases group 1 A254_00100 PF13439 Glycosyltransferase Family 4 A254_00102 PF16363 GDP-mannose 4,6 dehydratase A254_00103 PF16363 GDP-mannose 4,6 dehydratase A254_00105 PF17768 RecJ OB domain A254_00105 PF10141 Single-strand DNA-specific exonuclease, C terminal domain A254_00105 PF01368 DHH family A254_00105 PF02272 DHHA1 domain A254_00106 PF01227 GTP cyclohydrolase I A254_00107 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain A254_00107 PF13378 Enolase C-terminal domain-like A254_00108 PF01281 Ribosomal protein L9, N-terminal domain A254_00108 PF03948 Ribosomal protein L9, C-terminal domain A254_00109 PF01084 Ribosomal protein S18 A254_00110 PF01250 Ribosomal protein S6 A254_00111 PF00698 Acyl transferase domain A254_00114 PF02416 mttA/Hcf106 family A254_00115 PF02416 mttA/Hcf106 family A254_00116 PF00902 Sec-independent protein translocase protein (TatC) A254_00118 PF07568 Histidine kinase A254_00118 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00118 PF12282 Signal transduction histidine kinase A254_00120 PF00270 DEAD/DEAH box helicase A254_00120 PF00271 Helicase conserved C-terminal domain A254_00122 PF00342 Phosphoglucose isomerase A254_00123 PF07992 Pyridine nucleotide-disulphide oxidoreductase A254_00123 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A254_00125 PF02705 K+ potassium transporter A254_00127 PF00795 Carbon-nitrogen hydrolase A254_00128 PF03466 LysR substrate binding domain A254_00128 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A254_00131 PF00588 SpoU rRNA Methylase family A254_00132 PF03477 ATP cone domain A254_00133 PF00464 Serine hydroxymethyltransferase A254_00134 PF02502 Ribose/Galactose Isomerase A254_00135 PF00155 Aminotransferase class I and II A254_00136 PF01177 Asp/Glu/Hydantoin racemase A254_00137 PF07690 Major Facilitator Superfamily A254_00138 PF02660 Glycerol-3-phosphate acyltransferase A254_00139 PF02481 DNA recombination-mediator protein A A254_00139 PF17782 DprA winged helix domain A254_00140 PF01131 DNA topoisomerase A254_00140 PF01396 Topoisomerase DNA binding C4 zinc finger A254_00140 PF13368 Topoisomerase C-terminal repeat A254_00140 PF01751 Toprim domain A254_00141 PF00899 ThiF family A254_00142 PF00692 dUTPase A254_00143 PF02441 Flavoprotein A254_00143 PF04127 DNA / pantothenate metabolism flavoprotein A254_00144 PF03109 ABC1 family A254_00145 PF01209 ubiE/COQ5 methyltransferase family A254_00147 PF06827 Zinc finger found in FPG and IleRS A254_00147 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain A254_00147 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain A254_00152 PF08544 GHMP kinases C terminal A254_00152 PF00288 GHMP kinases N terminal domain A254_00154 PF03853 YjeF-related protein N-terminus A254_00154 PF01256 Carbohydrate kinase A254_00155 PF05958 tRNA (Uracil-5-)-methyltransferase A254_00156 PF01502 Phosphoribosyl-AMP cyclohydrolase A254_00157 PF00486 Transcriptional regulatory protein, C terminal A254_00157 PF00072 Response regulator receiver domain A254_00158 PF00512 His Kinase A (phospho-acceptor) domain A254_00158 PF16527 Two-component sensor protein CpxA, periplasmic domain A254_00158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00158 PF00672 HAMP domain A254_00161 PF04996 Succinylarginine dihydrolase A254_00162 PF00933 Glycosyl hydrolase family 3 N terminal domain A254_00164 PF01869 BadF/BadG/BcrA/BcrD ATPase family A254_00165 PF02129 X-Pro dipeptidyl-peptidase (S15 family) A254_00165 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain A254_00166 PF00154 recA bacterial DNA recombination protein A254_00168 PF00486 Transcriptional regulatory protein, C terminal A254_00168 PF00072 Response regulator receiver domain A254_00169 PF01895 PhoU domain A254_00170 PF00512 His Kinase A (phospho-acceptor) domain A254_00170 PF00989 PAS fold A254_00170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00170 PF11808 Phosphate regulon sensor protein PhoR A254_00171 PF02666 Phosphatidylserine decarboxylase A254_00172 PF01066 CDP-alcohol phosphatidyltransferase A254_00173 PF01177 Asp/Glu/Hydantoin racemase A254_00175 PF00318 Ribosomal protein S2 A254_00176 PF00889 Elongation factor TS A254_00177 PF00696 Amino acid kinase family A254_00178 PF01765 Ribosome recycling factor A254_00179 PF01255 Putative undecaprenyl diphosphate synthase A254_00181 PF13288 DXP reductoisomerase C-terminal domain A254_00181 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain A254_00181 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase A254_00182 PF17820 PDZ domain A254_00182 PF02163 Peptidase family M50 A254_00183 PF07244 Surface antigen variable number repeat A254_00183 PF01103 Surface antigen A254_00185 PF07977 FabA-like domain A254_00186 PF01197 Ribosomal protein L31 A254_00189 PF07992 Pyridine nucleotide-disulphide oxidoreductase A254_00190 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain A254_00190 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain A254_00191 PF10369 Small subunit of acetolactate synthase A254_00192 PF00205 Thiamine pyrophosphate enzyme, central domain A254_00192 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A254_00192 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A254_00195 PF00034 Cytochrome c A254_00195 PF03150 Di-haem cytochrome c peroxidase A254_00195 PF14376 Haem-binding domain A254_00196 PF01523 Putative modulator of DNA gyrase A254_00198 PF00484 Carbonic anhydrase A254_00199 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family A254_00199 PF04055 Radical SAM superfamily A254_00200 PF03364 Polyketide cyclase / dehydrase and lipid transport A254_00201 PF18146 Damage-inducible protein CinA KH domain A254_00201 PF00994 Probable molybdopterin binding domain A254_00201 PF02464 Competence-damaged protein A254_00203 PF02542 YgbB family A254_00203 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase A254_00204 PF01207 Dihydrouridine synthase (Dus) A254_00205 PF00158 Sigma-54 interaction domain A254_00205 PF00072 Response regulator receiver domain A254_00205 PF02954 Bacterial regulatory protein, Fis family A254_00206 PF00672 HAMP domain A254_00206 PF00989 PAS fold A254_00206 PF00512 His Kinase A (phospho-acceptor) domain A254_00206 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00207 PF00072 Response regulator receiver domain A254_00207 PF00158 Sigma-54 interaction domain A254_00207 PF02954 Bacterial regulatory protein, Fis family A254_00209 PF00216 Bacterial DNA-binding protein A254_00210 PF13411 MerR HTH family regulatory protein A254_00211 PF13417 Glutathione S-transferase, N-terminal domain A254_00211 PF00043 Glutathione S-transferase, C-terminal domain A254_00212 PF01493 GXGXG motif A254_00212 PF00310 Glutamine amidotransferases class-II A254_00212 PF04898 Glutamate synthase central domain A254_00212 PF01645 Conserved region in glutamate synthase A254_00213 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster A254_00213 PF07992 Pyridine nucleotide-disulphide oxidoreductase A254_00214 PF02673 Bacitracin resistance protein BacA A254_00216 PF03167 Uracil DNA glycosylase superfamily A254_00217 PF07992 Pyridine nucleotide-disulphide oxidoreductase A254_00218 PF04279 Intracellular septation protein A A254_00219 PF07690 Major Facilitator Superfamily A254_00221 PF01037 Lrp/AsnC ligand binding domain A254_00222 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00222 PF00512 His Kinase A (phospho-acceptor) domain A254_00222 PF00989 PAS fold A254_00222 PF13188 PAS domain A254_00224 PF00512 His Kinase A (phospho-acceptor) domain A254_00224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00225 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE A254_00226 PF12804 MobA-like NTP transferase domain A254_00227 PF12705 PD-(D/E)XK nuclease superfamily A254_00228 PF00580 UvrD/REP helicase N-terminal domain A254_00228 PF13361 UvrD-like helicase C-terminal domain A254_00228 PF12705 PD-(D/E)XK nuclease superfamily A254_00229 PF00085 Thioredoxin A254_00230 PF00575 S1 RNA binding domain A254_00230 PF00773 RNB domain A254_00230 PF08206 Ribonuclease B OB domain A254_00230 PF08461 Ribonuclease R winged-helix domain A254_00230 PF17876 Cold shock domain A254_00231 PF03819 MazG nucleotide pyrophosphohydrolase domain A254_00233 PF01026 TatD related DNase A254_00234 PF09334 tRNA synthetases class I (M) A254_00234 PF08264 Anticodon-binding domain of tRNA A254_00235 PF12169 DNA polymerase III subunits gamma and tau domain III A254_00236 PF02223 Thymidylate kinase A254_00237 PF07943 Penicillin-binding protein 5, C-terminal domain A254_00237 PF00768 D-alanyl-D-alanine carboxypeptidase A254_00238 PF03330 Lytic transglycolase A254_00238 PF05036 Sporulation related domain A254_00239 PF13406 Transglycosylase SLT domain A254_00240 PF01270 Glycosyl hydrolases family 8 A254_00241 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) A254_00244 PF07238 PilZ domain A254_00244 PF03552 Cellulose synthase A254_00244 PF00535 Glycosyl transferase family 2 A254_00247 PF01245 Ribosomal protein L19 A254_00248 PF01746 tRNA (Guanine-1)-methyltransferase A254_00249 PF01782 RimM N-terminal domain A254_00249 PF05239 PRC-barrel domain A254_00250 PF00886 Ribosomal protein S16 A254_00251 PF02978 Signal peptide binding domain A254_00251 PF02881 SRP54-type protein, helical bundle domain A254_00251 PF00448 SRP54-type protein, GTPase domain A254_00252 PF01678 Diaminopimelate epimerase A254_00253 PF00919 Uncharacterized protein family UPF0004 A254_00253 PF04055 Radical SAM superfamily A254_00254 PF02881 SRP54-type protein, helical bundle domain A254_00254 PF00448 SRP54-type protein, GTPase domain A254_00256 PF00684 DnaJ central domain A254_00256 PF00226 DnaJ domain A254_00256 PF01556 DnaJ C terminal domain A254_00258 PF02657 Fe-S metabolism associated domain A254_00262 PF04012 PspA/IM30 family A254_00264 PF02954 Bacterial regulatory protein, Fis family A254_00264 PF00158 Sigma-54 interaction domain A254_00265 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain A254_00265 PF02777 Iron/manganese superoxide dismutases, C-terminal domain A254_00268 PF12626 Polymerase A arginine-rich C-terminus A254_00268 PF01743 Poly A polymerase head domain A254_00268 PF12627 Probable RNA and SrmB- binding site of polymerase A A254_00269 PF08448 PAS fold A254_00269 PF00990 Diguanylate cyclase, GGDEF domain A254_00269 PF00563 EAL domain A254_00269 PF08447 PAS fold A254_00270 PF03989 DNA gyrase C-terminal domain, beta-propeller A254_00270 PF00521 DNA gyrase/topoisomerase IV, subunit A A254_00271 PF01259 SAICAR synthetase A254_00272 PF00005 ABC transporter A254_00273 PF00528 Binding-protein-dependent transport system inner membrane component A254_00274 PF00528 Binding-protein-dependent transport system inner membrane component A254_00275 PF12849 PBP superfamily domain A254_00277 PF01741 Large-conductance mechanosensitive channel, MscL A254_00279 PF04536 TPM domain A254_00283 PF02867 Ribonucleotide reductase, barrel domain A254_00283 PF00317 Ribonucleotide reductase, all-alpha domain A254_00283 PF03477 ATP cone domain A254_00285 PF00764 Arginosuccinate synthase A254_00288 PF04055 Radical SAM superfamily A254_00290 PF00005 ABC transporter A254_00294 PF06508 Queuosine biosynthesis protein QueC A254_00295 PF00266 Aminotransferase class-V A254_00296 PF02129 X-Pro dipeptidyl-peptidase (S15 family) A254_00297 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain A254_00297 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain A254_00298 PF01916 Deoxyhypusine synthase A254_00299 PF02405 Permease MlaE A254_00300 PF00005 ABC transporter A254_00303 PF01176 Translation initiation factor 1A / IF-1 A254_00304 PF02545 Maf-like protein A254_00307 PF13811 Domain of unknown function (DUF4186) A254_00309 PF01565 FAD binding domain A254_00309 PF02913 FAD linked oxidases, C-terminal domain A254_00310 PF01062 Bestrophin, RFP-TM, chloride channel A254_00311 PF00809 Pterin binding enzyme A254_00312 PF18755 Restriction Enzyme Adenine Methylase Associated A254_00312 PF01555 DNA methylase A254_00313 PF01351 Ribonuclease HII A254_00314 PF08543 Phosphomethylpyrimidine kinase A254_00314 PF02581 Thiamine monophosphate synthase A254_00315 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A254_00315 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A254_00315 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A254_00315 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A254_00316 PF00854 POT family A254_00317 PF08267 Cobalamin-independent synthase, N-terminal domain A254_00317 PF01717 Cobalamin-independent synthase, Catalytic domain A254_00318 PF03481 Putative GTP-binding controlling metal-binding A254_00318 PF01300 Telomere recombination A254_00319 PF01625 Peptide methionine sulfoxide reductase A254_00320 PF01081 KDPG and KHG aldolase A254_00321 PF00924 Mechanosensitive ion channel A254_00324 PF00011 Hsp20/alpha crystallin family A254_00327 PF01258 Prokaryotic dksA/traR C4-type zinc finger A254_00328 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A254_00328 PF02403 Seryl-tRNA synthetase N-terminal domain A254_00329 PF01975 Survival protein SurE A254_00331 PF00528 Binding-protein-dependent transport system inner membrane component A254_00333 PF00005 ABC transporter A254_00333 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A254_00334 PF02767 DNA polymerase III beta subunit, central domain A254_00334 PF02768 DNA polymerase III beta subunit, C-terminal domain A254_00334 PF00712 DNA polymerase III beta subunit, N-terminal domain A254_00335 PF00593 TonB dependent receptor A254_00335 PF07715 TonB-dependent Receptor Plug Domain A254_00337 PF00248 Aldo/keto reductase family A254_00340 PF04794 YdjC-like protein A254_00343 PF00962 Adenosine/AMP deaminase A254_00345 PF00860 Permease family A254_00347 PF01773 Na+ dependent nucleoside transporter N-terminus A254_00347 PF07662 Na+ dependent nucleoside transporter C-terminus A254_00347 PF07670 Nucleoside recognition A254_00348 PF07690 Major Facilitator Superfamily A254_00349 PF00529 HlyD membrane-fusion protein of T1SS A254_00349 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A254_00350 PF02321 Outer membrane efflux protein A254_00351 PF00440 Bacterial regulatory proteins, tetR family A254_00352 PF01979 Amidohydrolase family A254_00354 PF00912 Transglycosylase A254_00355 PF02167 Cytochrome C1 family A254_00356 PF00033 Cytochrome b/b6/petB A254_00356 PF00032 Cytochrome b(C-terminal)/b6/petD A254_00357 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal A254_00357 PF00355 Rieske [2Fe-2S] domain A254_00358 PF00588 SpoU rRNA Methylase family A254_00359 PF01218 Coproporphyrinogen III oxidase A254_00361 PF06689 ClpX C4-type zinc finger A254_00361 PF10431 C-terminal, D2-small domain, of ClpB protein A254_00361 PF07724 AAA domain (Cdc48 subfamily) A254_00362 PF00574 Clp protease A254_00364 PF05697 Bacterial trigger factor protein (TF) A254_00364 PF05698 Bacterial trigger factor protein (TF) C-terminus A254_00364 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A254_00368 PF00251 Glycosyl hydrolases family 32 N-terminal domain A254_00368 PF08244 Glycosyl hydrolases family 32 C terminal A254_00370 PF01370 NAD dependent epimerase/dehydratase family A254_00371 PF12802 MarR family A254_00372 PF01979 Amidohydrolase family A254_00373 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase A254_00374 PF00155 Aminotransferase class I and II A254_00375 PF00892 EamA-like transporter family A254_00381 PF03576 Peptidase family S58 A254_00382 PF03588 Leucyl/phenylalanyl-tRNA protein transferase A254_00385 PF00313 'Cold-shock' DNA-binding domain A254_00386 PF02810 SEC-C motif A254_00386 PF07517 SecA DEAD-like domain A254_00386 PF01043 SecA preprotein cross-linking domain A254_00386 PF07516 SecA Wing and Scaffold domain A254_00387 PF01960 ArgJ family A254_00391 PF00072 Response regulator receiver domain A254_00391 PF00990 Diguanylate cyclase, GGDEF domain A254_00392 PF00199 Catalase A254_00392 PF06628 Catalase-related immune-responsive A254_00396 PF00403 Heavy-metal-associated domain A254_00397 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain A254_00397 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain A254_00398 PF01063 Amino-transferase class IV A254_00400 PF02563 Polysaccharide biosynthesis/export protein A254_00401 PF00005 ABC transporter A254_00405 PF13632 Glycosyl transferase family group 2 A254_00406 PF04349 Periplasmic glucan biosynthesis protein, MdoG A254_00408 PF08502 LeuA allosteric (dimerisation) domain A254_00408 PF00682 HMGL-like A254_00409 PF00593 TonB dependent receptor A254_00411 PF00749 tRNA synthetases class I (E and Q), catalytic domain A254_00412 PF02540 NAD synthase A254_00412 PF00795 Carbon-nitrogen hydrolase A254_00417 PF00144 Beta-lactamase A254_00418 PF00929 Exonuclease A254_00418 PF04851 Type III restriction enzyme, res subunit A254_00418 PF13307 Helicase C-terminal domain A254_00419 PF01921 tRNA synthetases class I (K) A254_00420 PF01263 Aldose 1-epimerase A254_00421 PF00239 Resolvase, N terminal domain A254_00421 PF02796 Helix-turn-helix domain of resolvase A254_00424 PF00572 Ribosomal protein L13 A254_00425 PF00380 Ribosomal protein S9/S16 A254_00426 PF02203 Tar ligand binding domain homologue A254_00426 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A254_00426 PF00672 HAMP domain A254_00427 PF01627 Hpt domain A254_00427 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00427 PF02895 Signal transducing histidine kinase, homodimeric domain A254_00427 PF01584 CheW-like domain A254_00428 PF00072 Response regulator receiver domain A254_00428 PF01339 CheB methylesterase A254_00431 PF02401 LytB protein A254_00432 PF04055 Radical SAM superfamily A254_00434 PF13243 Squalene-hopene cyclase C-terminal domain A254_00434 PF13249 Squalene-hopene cyclase N-terminal domain A254_00435 PF01593 Flavin containing amine oxidoreductase A254_00439 PF01370 NAD dependent epimerase/dehydratase family A254_00440 PF01545 Cation efflux family A254_00441 PF03796 DnaB-like helicase C terminal domain A254_00441 PF00772 DnaB-like helicase N terminal domain A254_00442 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region A254_00443 PF00692 dUTPase A254_00444 PF02575 YbaB/EbfC DNA-binding family A254_00445 PF12170 DNA polymerase III tau subunit V interacting with alpha A254_00445 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding A254_00445 PF12169 DNA polymerase III subunits gamma and tau domain III A254_00446 PF00111 2Fe-2S iron-sulfur cluster binding domain A254_00447 PF00266 Aminotransferase class-V A254_00449 PF02609 Exonuclease VII small subunit A254_00450 PF00348 Polyprenyl synthetase A254_00451 PF01467 Cytidylyltransferase-like A254_00452 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD A254_00453 PF02547 Queuosine biosynthesis protein A254_00454 PF01243 Pyridoxamine 5'-phosphate oxidase A254_00454 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region A254_00455 PF00158 Sigma-54 interaction domain A254_00455 PF00072 Response regulator receiver domain A254_00455 PF02954 Bacterial regulatory protein, Fis family A254_00457 PF04966 Carbohydrate-selective porin, OprB family A254_00458 PF02254 TrkA-N domain A254_00458 PF00999 Sodium/hydrogen exchanger family A254_00459 PF01411 tRNA synthetases class II (A) A254_00459 PF02272 DHHA1 domain A254_00459 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A254_00461 PF05746 DALR anticodon binding domain A254_00461 PF00750 tRNA synthetases class I (R) A254_00461 PF00133 tRNA synthetases class I (I, L, M and V) A254_00461 PF03485 Arginyl tRNA synthetase N terminal domain A254_00462 PF13286 Phosphohydrolase-associated domain A254_00462 PF01966 HD domain A254_00463 PF00654 Voltage gated chloride channel A254_00465 PF12327 FtsZ family, C-terminal domain A254_00465 PF00091 Tubulin/FtsZ family, GTPase domain A254_00466 PF02491 SHS2 domain inserted in FTSA A254_00467 PF03799 Cell division protein FtsQ A254_00467 PF08478 POTRA domain, FtsQ-type A254_00468 PF07478 D-ala D-ala ligase C-terminus A254_00468 PF01820 D-ala D-ala ligase N-terminus A254_00469 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain A254_00469 PF01565 FAD binding domain A254_00470 PF01225 Mur ligase family, catalytic domain A254_00470 PF08245 Mur ligase middle domain A254_00470 PF02875 Mur ligase family, glutamate ligase domain A254_00471 PF03033 Glycosyltransferase family 28 N-terminal domain A254_00471 PF04101 Glycosyltransferase family 28 C-terminal domain A254_00472 PF01098 Cell cycle protein A254_00473 PF08245 Mur ligase middle domain A254_00474 PF00953 Glycosyl transferase family 4 A254_00474 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 A254_00475 PF08245 Mur ligase middle domain A254_00475 PF02875 Mur ligase family, glutamate ligase domain A254_00475 PF01225 Mur ligase family, catalytic domain A254_00476 PF01225 Mur ligase family, catalytic domain A254_00476 PF08245 Mur ligase middle domain A254_00476 PF02875 Mur ligase family, glutamate ligase domain A254_00477 PF00905 Penicillin binding protein transpeptidase domain A254_00477 PF03717 Penicillin-binding Protein dimerisation domain A254_00479 PF01795 MraW methylase family A254_00481 PF00291 Pyridoxal-phosphate dependent enzyme A254_00482 PF00586 AIR synthase related protein, N-terminal domain A254_00482 PF02769 AIR synthase related protein, C-terminal domain A254_00482 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain A254_00483 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain A254_00483 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain A254_00483 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain A254_00484 PF01242 6-pyruvoyl tetrahydropterin synthase A254_00486 PF02646 RmuC family A254_00487 PF01327 Polypeptide deformylase A254_00488 PF13662 Toprim domain A254_00488 PF02132 RecR protein A254_00489 PF00551 Formyl transferase A254_00489 PF02911 Formyl transferase, C-terminal domain A254_00490 PF01416 tRNA pseudouridine synthase A254_00491 PF02594 Uncharacterised ACR, YggU family COG1872 A254_00492 PF00919 Uncharacterized protein family UPF0004 A254_00492 PF04055 Radical SAM superfamily A254_00492 PF18693 TRAM domain A254_00493 PF00883 Cytosol aminopeptidase family, catalytic domain A254_00493 PF02789 Cytosol aminopeptidase family, N-terminal domain A254_00495 PF01118 Semialdehyde dehydrogenase, NAD binding domain A254_00498 PF00005 ABC transporter A254_00500 PF02321 Outer membrane efflux protein A254_00501 PF00106 short chain dehydrogenase A254_00504 PF00326 Prolyl oligopeptidase family A254_00504 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain A254_00506 PF01979 Amidohydrolase family A254_00507 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A254_00507 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A254_00510 PF00034 Cytochrome c A254_00510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III A254_00511 PF00732 GMC oxidoreductase A254_00511 PF05199 GMC oxidoreductase A254_00512 PF12318 Membrane bound FAD containing D-sorbitol dehydrogenase A254_00513 PF03652 Holliday junction resolvase A254_00514 PF02686 Glu-tRNAGln amidotransferase C subunit A254_00515 PF01425 Amidase A254_00516 PF02934 GatB/GatE catalytic domain A254_00516 PF02637 GatB domain A254_00517 PF03466 LysR substrate binding domain A254_00517 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A254_00518 PF02321 Outer membrane efflux protein A254_00520 PF00873 AcrB/AcrD/AcrF family A254_00521 PF00753 Metallo-beta-lactamase superfamily A254_00522 PF01795 MraW methylase family A254_00523 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A254_00523 PF03466 LysR substrate binding domain A254_00524 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD A254_00525 PF03448 MgtE intracellular N domain A254_00525 PF01769 Divalent cation transporter A254_00525 PF00571 CBS domain A254_00529 PF01966 HD domain A254_00529 PF08335 GlnD PII-uridylyltransferase A254_00530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A254_00530 PF02824 TGS domain A254_00530 PF03129 Anticodon binding domain A254_00530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A254_00533 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A254_00534 PF16123 Hydroxyacylglutathione hydrolase C-terminus A254_00534 PF00753 Metallo-beta-lactamase superfamily A254_00539 PF00462 Glutaredoxin A254_00540 PF10090 Histidine phosphotransferase C-terminal domain A254_00542 PF00849 RNA pseudouridylate synthase A254_00543 PF00140 Sigma-70 factor, region 1.2 A254_00543 PF04542 Sigma-70 region 2 A254_00543 PF04545 Sigma-70, region 4 A254_00544 PF00291 Pyridoxal-phosphate dependent enzyme A254_00550 PF00009 Elongation factor Tu GTP binding domain A254_00550 PF16658 Class II release factor RF3, C-terminal domain A254_00550 PF03144 Elongation factor Tu domain 2 A254_00552 PF03992 Antibiotic biosynthesis monooxygenase A254_00553 PF05690 Thiazole biosynthesis protein ThiG A254_00554 PF01220 Dehydroquinase class II A254_00555 PF00364 Biotin-requiring enzyme A254_00556 PF02785 Biotin carboxylase C-terminal domain A254_00556 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A254_00556 PF00289 Biotin carboxylase, N-terminal domain A254_00557 PF00459 Inositol monophosphatase family A254_00559 PF04983 RNA polymerase Rpb1, domain 3 A254_00559 PF05000 RNA polymerase Rpb1, domain 4 A254_00559 PF04998 RNA polymerase Rpb1, domain 5 A254_00559 PF00623 RNA polymerase Rpb1, domain 2 A254_00559 PF04997 RNA polymerase Rpb1, domain 1 A254_00560 PF04560 RNA polymerase Rpb2, domain 7 A254_00560 PF00562 RNA polymerase Rpb2, domain 6 A254_00560 PF10385 RNA polymerase beta subunit external 1 domain A254_00560 PF04565 RNA polymerase Rpb2, domain 3 A254_00560 PF04561 RNA polymerase Rpb2, domain 2 A254_00560 PF04563 RNA polymerase beta subunit A254_00561 PF00542 Ribosomal protein L7/L12 C-terminal domain A254_00561 PF16320 Ribosomal protein L7/L12 dimerisation domain A254_00562 PF00466 Ribosomal protein L10 A254_00563 PF00687 Ribosomal protein L1p/L10e family A254_00564 PF03946 Ribosomal protein L11, N-terminal domain A254_00564 PF00298 Ribosomal protein L11, RNA binding domain A254_00565 PF00467 KOW motif A254_00565 PF02357 Transcription termination factor nusG A254_00566 PF00584 SecE/Sec61-gamma subunits of protein translocation complex A254_00568 PF01431 Peptidase family M13 A254_00568 PF05649 Peptidase family M13 A254_00569 PF01668 SmpB protein A254_00570 PF00701 Dihydrodipicolinate synthetase family A254_00571 PF01464 Transglycosylase SLT domain A254_00572 PF01272 Transcription elongation factor, GreA/GreB, C-term A254_00572 PF03449 Transcription elongation factor, N-terminal A254_00573 PF03976 Polyphosphate kinase 2 (PPK2) A254_00574 PF02938 GAD domain A254_00574 PF00152 tRNA synthetases class II (D, K and N) A254_00574 PF01336 OB-fold nucleic acid binding domain A254_00575 PF01612 3'-5' exonuclease A254_00575 PF00570 HRDC domain A254_00576 PF02541 Ppx/GppA phosphatase family A254_00577 PF13089 Polyphosphate kinase N-terminal domain A254_00577 PF17941 Polyphosphate kinase C-terminal domain 1 A254_00577 PF13090 Polyphosphate kinase C-terminal domain 2 A254_00577 PF02503 Polyphosphate kinase middle domain A254_00580 PF02769 AIR synthase related protein, C-terminal domain A254_00580 PF00586 AIR synthase related protein, N-terminal domain A254_00581 PF00551 Formyl transferase A254_00582 PF05173 Dihydrodipicolinate reductase, C-terminus A254_00582 PF01113 Dihydrodipicolinate reductase, N-terminus A254_00583 PF00633 Helix-hairpin-helix motif A254_00583 PF00730 HhH-GPD superfamily base excision DNA repair protein A254_00583 PF10576 Iron-sulfur binding domain of endonuclease III A254_00585 PF00501 AMP-binding enzyme A254_00586 PF00326 Prolyl oligopeptidase family A254_00589 PF00893 Small Multidrug Resistance protein A254_00594 PF02566 OsmC-like protein A254_00595 PF00521 DNA gyrase/topoisomerase IV, subunit A A254_00595 PF03989 DNA gyrase C-terminal domain, beta-propeller A254_00596 PF01134 Glucose inhibited division protein A A254_00597 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A254_00597 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A254_00598 PF03547 Membrane transport protein A254_00599 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A254_00599 PF00205 Thiamine pyrophosphate enzyme, central domain A254_00599 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A254_00602 PF09615 CRISPR-associated protein (Cas_Csy3) A254_00603 PF09614 CRISPR-associated protein (Cas_Csy2) A254_00604 PF09611 CRISPR-associated protein (Cas_Csy1) A254_00605 PF18019 HD domain A254_00606 PF01867 CRISPR associated protein Cas1 A254_00608 PF00180 Isocitrate/isopropylmalate dehydrogenase A254_00609 PF01053 Cys/Met metabolism PLP-dependent enzyme A254_00610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A254_00610 PF03466 LysR substrate binding domain A254_00612 PF02565 Recombination protein O C terminal A254_00612 PF11967 Recombination protein O N terminal A254_00613 PF08459 UvrC Helix-hairpin-helix N-terminal A254_00613 PF01541 GIY-YIG catalytic domain A254_00613 PF12826 Helix-hairpin-helix motif A254_00613 PF02151 UvrB/uvrC motif A254_00614 PF00430 ATP synthase B/B' CF(0) A254_00615 PF00430 ATP synthase B/B' CF(0) A254_00617 PF00119 ATP synthase A chain A254_00618 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter A254_00622 PF04002 RadC-like JAB domain A254_00623 PF00206 Lyase A254_00623 PF10397 Adenylosuccinate lyase C-terminus A254_00624 PF00684 DnaJ central domain A254_00624 PF01556 DnaJ C terminal domain A254_00624 PF00226 DnaJ domain A254_00625 PF00012 Hsp70 protein A254_00627 PF01546 Peptidase family M20/M25/M40 A254_00627 PF07687 Peptidase dimerisation domain A254_00628 PF04958 Arginine N-succinyltransferase beta subunit A254_00629 PF00156 Phosphoribosyl transferase domain A254_00631 PF01522 Polysaccharide deacetylase A254_00632 PF01594 AI-2E family transporter A254_00634 PF02465 Flagellar hook-associated protein 2 N-terminus A254_00634 PF07195 Flagellar hook-associated protein 2 C-terminus A254_00635 PF01312 FlhB HrpN YscU SpaS Family A254_00636 PF01311 Bacterial export proteins, family 1 A254_00637 PF01313 Bacterial export proteins, family 3 A254_00638 PF00813 FliP family A254_00640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term A254_00641 PF02154 Flagellar motor switch protein FliM A254_00641 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term A254_00645 PF18269 T3SS EscN ATPase C-terminal domain A254_00645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A254_00647 PF14842 FliG N-terminal domain A254_00647 PF01706 FliG C-terminal domain A254_00647 PF14841 FliG middle domain A254_00648 PF01514 Secretory protein of YscJ/FliF family A254_00648 PF08345 Flagellar M-ring protein C-terminal A254_00649 PF02049 Flagellar hook-basal body complex protein FliE A254_00650 PF00072 Response regulator receiver domain A254_00650 PF00158 Sigma-54 interaction domain A254_00650 PF02954 Bacterial regulatory protein, Fis family A254_00651 PF00700 Bacterial flagellin C-terminal helical region A254_00651 PF00669 Bacterial flagellin N-terminal helical region A254_00654 PF04542 Sigma-70 region 2 A254_00654 PF04539 Sigma-70 region 3 A254_00654 PF04545 Sigma-70, region 4 A254_00655 PF10609 NUBPL iron-transfer P-loop NTPase A254_00656 PF00771 FHIPEP family A254_00661 PF01618 MotA/TolQ/ExbB proton channel family A254_00663 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A254_00663 PF00460 Flagella basal body rod protein A254_00664 PF13861 FlgD Tudor-like domain A254_00664 PF13860 FlgD Ig-like domain A254_00664 PF03963 Flagellar hook capping protein - N-terminal region A254_00665 PF07559 Flagellar basal body protein FlaE A254_00665 PF07196 Flagellin hook IN motif A254_00665 PF00460 Flagella basal body rod protein A254_00665 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A254_00666 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A254_00666 PF00460 Flagella basal body rod protein A254_00667 PF00460 Flagella basal body rod protein A254_00667 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A254_00668 PF02107 Flagellar L-ring protein A254_00669 PF02119 Flagellar P-ring protein A254_00673 PF01618 MotA/TolQ/ExbB proton channel family A254_00674 PF00691 OmpA family A254_00674 PF13677 Membrane MotB of proton-channel complex MotA/MotB A254_00675 PF00072 Response regulator receiver domain A254_00675 PF13188 PAS domain A254_00675 PF08448 PAS fold A254_00675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00675 PF00512 His Kinase A (phospho-acceptor) domain A254_00676 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit A254_00677 PF00589 Phage integrase family A254_00677 PF02899 Phage integrase, N-terminal SAM-like domain A254_00680 PF01202 Shikimate kinase A254_00681 PF01761 3-dehydroquinate synthase A254_00684 PF02674 Colicin V production protein A254_00685 PF06745 KaiC A254_00685 PF18073 Rubredoxin metal binding domain A254_00687 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family A254_00688 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase A254_00689 PF00291 Pyridoxal-phosphate dependent enzyme A254_00690 PF00290 Tryptophan synthase alpha chain A254_00691 PF01039 Carboxyl transferase domain A254_00691 PF17848 Acetyl-coA carboxylase zinc finger domain A254_00692 PF08245 Mur ligase middle domain A254_00692 PF02875 Mur ligase family, glutamate ligase domain A254_00693 PF07690 Major Facilitator Superfamily A254_00694 PF00375 Sodium:dicarboxylate symporter family A254_00695 PF01479 S4 domain A254_00695 PF00849 RNA pseudouridylate synthase A254_00697 PF00580 UvrD/REP helicase N-terminal domain A254_00697 PF13361 UvrD-like helicase C-terminal domain A254_00698 PF13417 Glutathione S-transferase, N-terminal domain A254_00698 PF04399 Glutaredoxin 2, C terminal domain A254_00699 PF00005 ABC transporter A254_00700 PF00528 Binding-protein-dependent transport system inner membrane component A254_00705 PF00549 CoA-ligase A254_00705 PF02629 CoA binding domain A254_00706 PF07690 Major Facilitator Superfamily A254_00707 PF08482 ATP-dependent helicase C-terminal A254_00707 PF00270 DEAD/DEAH box helicase A254_00707 PF04408 Helicase associated domain (HA2) A254_00707 PF00271 Helicase conserved C-terminal domain A254_00708 PF00348 Polyprenyl synthetase A254_00709 PF01817 Chorismate mutase type II A254_00709 PF02153 Prephenate dehydrogenase A254_00710 PF00155 Aminotransferase class I and II A254_00712 PF07995 Glucose / Sorbosone dehydrogenase A254_00713 PF02576 RimP N-terminal domain A254_00713 PF17384 RimP C-terminal SH3 domain A254_00714 PF00575 S1 RNA binding domain A254_00714 PF08529 NusA N-terminal domain A254_00714 PF13184 NusA-like KH domain A254_00716 PF04760 Translation initiation factor IF-2, N-terminal region A254_00716 PF11987 Translation-initiation factor 2 A254_00716 PF08364 Bacterial translation initiation factor IF-2 associated region A254_00716 PF00009 Elongation factor Tu GTP binding domain A254_00717 PF02033 Ribosome-binding factor A A254_00718 PF00265 Thymidine kinase A254_00719 PF16198 tRNA pseudouridylate synthase B C-terminal domain A254_00719 PF01509 TruB family pseudouridylate synthase (N terminal domain) A254_00720 PF00312 Ribosomal protein S15 A254_00721 PF00575 S1 RNA binding domain A254_00721 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain A254_00721 PF03725 3' exoribonuclease family, domain 2 A254_00721 PF00013 KH domain A254_00721 PF01138 3' exoribonuclease family, domain 1 A254_00722 PF12282 Signal transduction histidine kinase A254_00722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00722 PF07568 Histidine kinase A254_00723 PF00654 Voltage gated chloride channel A254_00724 PF00916 Sulfate permease family A254_00724 PF01740 STAS domain A254_00725 PF00218 Indole-3-glycerol phosphate synthase A254_00726 PF00180 Isocitrate/isopropylmalate dehydrogenase A254_00727 PF00330 Aconitase family (aconitate hydratase) A254_00727 PF00694 Aconitase C-terminal domain A254_00729 PF01196 Ribosomal protein L17 A254_00730 PF01000 RNA polymerase Rpb3/RpoA insert domain A254_00730 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain A254_00730 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain A254_00731 PF00411 Ribosomal protein S11 A254_00732 PF00416 Ribosomal protein S13/S18 A254_00733 PF05191 Adenylate kinase, active site lid A254_00734 PF00344 SecY translocase A254_00735 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A A254_00736 PF00327 Ribosomal protein L30p/L7e A254_00737 PF00333 Ribosomal protein S5, N-terminal domain A254_00737 PF03719 Ribosomal protein S5, C-terminal domain A254_00738 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast A254_00739 PF00347 Ribosomal protein L6 A254_00740 PF00410 Ribosomal protein S8 A254_00741 PF00253 Ribosomal protein S14p/S29e A254_00742 PF00673 ribosomal L5P family C-terminus A254_00742 PF00281 Ribosomal protein L5 A254_00743 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 A254_00743 PF00467 KOW motif A254_00744 PF00238 Ribosomal protein L14p/L23e A254_00745 PF00366 Ribosomal protein S17 A254_00746 PF00831 Ribosomal L29 protein A254_00747 PF00252 Ribosomal protein L16p/L10e A254_00748 PF00189 Ribosomal protein S3, C-terminal domain A254_00748 PF07650 KH domain A254_00749 PF00237 Ribosomal protein L22p/L17e A254_00750 PF00203 Ribosomal protein S19 A254_00751 PF03947 Ribosomal Proteins L2, C-terminal domain A254_00751 PF00181 Ribosomal Proteins L2, RNA binding domain A254_00752 PF00276 Ribosomal protein L23 A254_00753 PF00573 Ribosomal protein L4/L1 family A254_00754 PF00297 Ribosomal protein L3 A254_00755 PF00338 Ribosomal protein S10p/S20e A254_00756 PF03144 Elongation factor Tu domain 2 A254_00756 PF03143 Elongation factor Tu C-terminal domain A254_00756 PF00009 Elongation factor Tu GTP binding domain A254_00757 PF00679 Elongation factor G C-terminus A254_00757 PF00009 Elongation factor Tu GTP binding domain A254_00757 PF14492 Elongation Factor G, domain II A254_00757 PF03144 Elongation factor Tu domain 2 A254_00757 PF03764 Elongation factor G, domain IV A254_00758 PF00177 Ribosomal protein S7p/S5e A254_00759 PF00164 Ribosomal protein S12/S23 A254_00760 PF01569 PAP2 superfamily A254_00761 PF07992 Pyridine nucleotide-disulphide oxidoreductase A254_00761 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A254_00762 PF03061 Thioesterase superfamily A254_00763 PF00364 Biotin-requiring enzyme A254_00763 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A254_00763 PF02817 e3 binding domain A254_00766 PF13185 GAF domain A254_00767 PF00472 RF-1 domain A254_00768 PF00849 RNA pseudouridylate synthase A254_00769 PF00535 Glycosyl transferase family 2 A254_00773 PF00912 Transglycosylase A254_00773 PF00905 Penicillin binding protein transpeptidase domain A254_00774 PF00132 Bacterial transferase hexapeptide (six repeats) A254_00774 PF12804 MobA-like NTP transferase domain A254_00775 PF13419 Haloacid dehalogenase-like hydrolase A254_00776 PF17243 POTRA domain TamA domain 1 A254_00776 PF01103 Surface antigen A254_00776 PF07244 Surface antigen variable number repeat A254_00778 PF07690 Major Facilitator Superfamily A254_00779 PF00120 Glutamine synthetase, catalytic domain A254_00779 PF03951 Glutamine synthetase, beta-Grasp domain A254_00780 PF00543 Nitrogen regulatory protein P-II A254_00781 PF01321 Creatinase/Prolidase N-terminal domain A254_00781 PF00557 Metallopeptidase family M24 A254_00782 PF00326 Prolyl oligopeptidase family A254_00782 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain A254_00786 PF03328 HpcH/HpaI aldolase/citrate lyase family A254_00788 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A254_00788 PF02770 Acyl-CoA dehydrogenase, middle domain A254_00788 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A254_00789 PF02308 MgtC family A254_00790 PF03447 Homoserine dehydrogenase, NAD binding domain A254_00790 PF01842 ACT domain A254_00790 PF00742 Homoserine dehydrogenase A254_00791 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded A254_00793 PF00512 His Kinase A (phospho-acceptor) domain A254_00793 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00793 PF00989 PAS fold A254_00793 PF16736 Single Cache-like A254_00795 PF00486 Transcriptional regulatory protein, C terminal A254_00795 PF00072 Response regulator receiver domain A254_00797 PF01872 RibD C-terminal domain A254_00797 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region A254_00798 PF00677 Lumazine binding domain A254_00799 PF00925 GTP cyclohydrolase II A254_00799 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase A254_00800 PF00885 6,7-dimethyl-8-ribityllumazine synthase A254_00802 PF03466 LysR substrate binding domain A254_00802 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A254_00804 PF00425 chorismate binding enzyme A254_00804 PF04715 Anthranilate synthase component I, N terminal region A254_00806 PF00121 Triosephosphate isomerase A254_00808 PF00117 Glutamine amidotransferase class-I A254_00808 PF06418 CTP synthase N-terminus A254_00809 PF03129 Anticodon binding domain A254_00809 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A254_00810 PF02687 FtsX-like permease family A254_00810 PF12704 MacB-like periplasmic core domain A254_00811 PF00005 ABC transporter A254_00812 PF01037 Lrp/AsnC ligand binding domain A254_00813 PF00175 Oxidoreductase NAD-binding domain A254_00813 PF00111 2Fe-2S iron-sulfur cluster binding domain A254_00814 PF01268 Formate--tetrahydrofolate ligase A254_00815 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal A254_00815 PF01926 50S ribosome-binding GTPase A254_00821 PF03062 MBOAT, membrane-bound O-acyltransferase family A254_00824 PF00268 Ribonucleotide reductase, small chain A254_00825 PF13419 Haloacid dehalogenase-like hydrolase A254_00828 PF00849 RNA pseudouridylate synthase A254_00828 PF01479 S4 domain A254_00833 PF00625 Guanylate kinase A254_00835 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal A254_00835 PF00132 Bacterial transferase hexapeptide (six repeats) A254_00835 PF14602 Hexapeptide repeat of succinyl-transferase A254_00837 PF01521 Iron-sulphur cluster biosynthesis A254_00838 PF01883 Iron-sulfur cluster assembly protein A254_00839 PF00266 Aminotransferase class-V A254_00840 PF01458 Uncharacterized protein family (UPF0051) A254_00841 PF00005 ABC transporter A254_00842 PF01458 Uncharacterized protein family (UPF0051) A254_00843 PF02082 Transcriptional regulator A254_00844 PF00155 Aminotransferase class I and II A254_00845 PF02153 Prephenate dehydrogenase A254_00846 PF01553 Acyltransferase A254_00849 PF00005 ABC transporter A254_00851 PF02325 YGGT family A254_00852 PF01914 MarC family integral membrane protein A254_00853 PF00986 DNA gyrase B subunit, carboxyl terminus A254_00853 PF00204 DNA gyrase B A254_00853 PF01751 Toprim domain A254_00853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00854 PF01430 Hsp33 protein A254_00855 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A254_00855 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A254_00856 PF00202 Aminotransferase class-III A254_00858 PF01061 ABC-2 type transporter A254_00859 PF02861 Clp amino terminal domain, pathogenicity island component A254_00859 PF17871 AAA lid domain A254_00859 PF07724 AAA domain (Cdc48 subfamily) A254_00859 PF00004 ATPase family associated with various cellular activities (AAA) A254_00859 PF10431 C-terminal, D2-small domain, of ClpB protein A254_00861 PF02541 Ppx/GppA phosphatase family A254_00862 PF01728 FtsJ-like methyltransferase A254_00863 PF00563 EAL domain A254_00863 PF00990 Diguanylate cyclase, GGDEF domain A254_00863 PF08447 PAS fold A254_00863 PF08448 PAS fold A254_00888 PF02435 Levansucrase/Invertase A254_00889 PF02435 Levansucrase/Invertase A254_00892 PF01037 Lrp/AsnC ligand binding domain A254_00893 PF01177 Asp/Glu/Hydantoin racemase A254_00894 PF02685 Glucokinase A254_00895 PF00920 Dehydratase family A254_00896 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain A254_00896 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain A254_00897 PF00083 Sugar (and other) transporter A254_00898 PF03119 NAD-dependent DNA ligase C4 zinc finger domain A254_00898 PF00533 BRCA1 C Terminus (BRCT) domain A254_00898 PF12826 Helix-hairpin-helix motif A254_00898 PF01653 NAD-dependent DNA ligase adenylation domain A254_00898 PF03120 NAD-dependent DNA ligase OB-fold domain A254_00899 PF01702 Queuine tRNA-ribosyltransferase A254_00900 PF04851 Type III restriction enzyme, res subunit A254_00900 PF00271 Helicase conserved C-terminal domain A254_00900 PF02151 UvrB/uvrC motif A254_00900 PF12344 Ultra-violet resistance protein B A254_00900 PF17757 UvrB interaction domain A254_00902 PF01098 Cell cycle protein A254_00903 PF03717 Penicillin-binding Protein dimerisation domain A254_00903 PF00905 Penicillin binding protein transpeptidase domain A254_00905 PF04085 rod shape-determining protein MreC A254_00907 PF08676 MutL C terminal dimerisation domain A254_00907 PF01119 DNA mismatch repair protein, C-terminal domain A254_00908 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase A254_00910 PF13086 AAA domain A254_00910 PF13087 AAA domain A254_00910 PF13086 AAA domain A254_00910 PF13195 Protein of unknown function (DUF4011) A254_00910 PF13087 AAA domain A254_00910 PF13195 Protein of unknown function (DUF4011) A254_00912 PF02622 Uncharacterized ACR, COG1678 A254_00913 PF01926 50S ribosome-binding GTPase A254_00913 PF13167 GTP-binding GTPase N-terminal A254_00913 PF16360 GTP-binding GTPase Middle Region A254_00914 PF17209 Hfq protein A254_00915 PF00909 Ammonium Transporter Family A254_00917 PF01523 Putative modulator of DNA gyrase A254_00921 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A254_00921 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A254_00921 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A254_00921 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A254_00923 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain A254_00924 PF02581 Thiamine monophosphate synthase A254_00925 PF05951 Bacterial protein of unknown function (DUF882) A254_00926 PF00459 Inositol monophosphatase family A254_00927 PF09285 Elongation factor P, C-terminal A254_00927 PF08207 Elongation factor P (EF-P) KOW-like domain A254_00927 PF01132 Elongation factor P (EF-P) OB domain A254_00928 PF01053 Cys/Met metabolism PLP-dependent enzyme A254_00929 PF14489 QueF-like protein A254_00931 PF01252 Signal peptidase (SPase) II A254_00932 PF08264 Anticodon-binding domain of tRNA A254_00932 PF00133 tRNA synthetases class I (I, L, M and V) A254_00933 PF01687 Riboflavin kinase A254_00933 PF06574 FAD synthetase A254_00934 PF00186 Dihydrofolate reductase A254_00939 PF13091 PLD-like domain A254_00939 PF13396 Phospholipase_D-nuclease N-terminal A254_00944 PF05159 Capsule polysaccharide biosynthesis protein A254_00947 PF00762 Ferrochelatase A254_00950 PF13742 OB-fold nucleic acid binding domain A254_00950 PF02601 Exonuclease VII, large subunit A254_00951 PF02843 Phosphoribosylglycinamide synthetase, C domain A254_00951 PF02844 Phosphoribosylglycinamide synthetase, N domain A254_00951 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain A254_00953 PF03471 Transporter associated domain A254_00953 PF03741 Integral membrane protein TerC family A254_00954 PF14437 MafB19-like deaminase A254_00955 PF00830 Ribosomal L28 family A254_00957 PF00083 Sugar (and other) transporter A254_00958 PF01790 Prolipoprotein diacylglyceryl transferase A254_00959 PF04286 Protein of unknown function (DUF445) A254_00960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A254_00961 PF04402 Protein of unknown function (DUF541) A254_00962 PF02321 Outer membrane efflux protein A254_00963 PF00873 AcrB/AcrD/AcrF family A254_00964 PF00529 HlyD membrane-fusion protein of T1SS A254_00964 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A254_00966 PF00313 'Cold-shock' DNA-binding domain A254_00970 PF00005 ABC transporter A254_00971 PF04552 Sigma-54, DNA binding domain A254_00971 PF04963 Sigma-54 factor, core binding domain A254_00971 PF00309 Sigma-54 factor, Activator interacting domain (AID) A254_00972 PF02773 S-adenosylmethionine synthetase, C-terminal domain A254_00972 PF00438 S-adenosylmethionine synthetase, N-terminal domain A254_00972 PF02772 S-adenosylmethionine synthetase, central domain A254_00973 PF00795 Carbon-nitrogen hydrolase A254_00983 PF03379 CcmB protein A254_00984 PF00005 ABC transporter A254_00985 PF08918 PhoQ Sensor A254_00985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_00986 PF00072 Response regulator receiver domain A254_00986 PF00486 Transcriptional regulatory protein, C terminal A254_00987 PF09330 D-lactate dehydrogenase, membrane binding A254_00987 PF01565 FAD binding domain A254_00988 PF00529 HlyD membrane-fusion protein of T1SS A254_00988 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A254_00989 PF00005 ABC transporter A254_00989 PF03412 Peptidase C39 family A254_00989 PF00664 ABC transporter transmembrane region A254_00993 PF00072 Response regulator receiver domain A254_00994 PF00471 Ribosomal protein L33 A254_00995 PF07724 AAA domain (Cdc48 subfamily) A254_00995 PF00004 ATPase family associated with various cellular activities (AAA) A254_00996 PF00227 Proteasome subunit A254_00997 PF00216 Bacterial DNA-binding protein A254_00999 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain A254_01000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A254_01000 PF02874 ATP synthase alpha/beta family, beta-barrel domain A254_01001 PF00231 ATP synthase A254_01002 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A254_01002 PF00306 ATP synthase alpha/beta chain, C terminal domain A254_01002 PF02874 ATP synthase alpha/beta family, beta-barrel domain A254_01003 PF00213 ATP synthase delta (OSCP) subunit A254_01004 PF10609 NUBPL iron-transfer P-loop NTPase A254_01005 PF13180 PDZ domain A254_01008 PF00588 SpoU rRNA Methylase family A254_01008 PF08032 RNA 2'-O ribose methyltransferase substrate binding A254_01010 PF00005 ABC transporter A254_01011 PF01032 FecCD transport family A254_01013 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain A254_01013 PF01367 5'-3' exonuclease, C-terminal SAM fold A254_01013 PF01612 3'-5' exonuclease A254_01013 PF00476 DNA polymerase family A A254_01014 PF00106 short chain dehydrogenase A254_01015 PF00561 alpha/beta hydrolase fold A254_01016 PF00561 alpha/beta hydrolase fold A254_01016 PF07021 Methionine biosynthesis protein MetW A254_01019 PF02559 CarD-like/TRCF domain A254_01020 PF00037 4Fe-4S binding domain A254_01020 PF11953 Domain of unknown function (DUF3470) A254_01021 PF00270 DEAD/DEAH box helicase A254_01021 PF08148 DSHCT (NUC185) domain A254_01021 PF00271 Helicase conserved C-terminal domain A254_01022 PF04225 Opacity-associated protein A LysM-like domain A254_01022 PF01551 Peptidase family M23 A254_01024 PF01554 MatE A254_01025 PF12951 Passenger-associated-transport-repeat A254_01025 PF03797 Autotransporter beta-domain A254_01025 PF00082 Subtilase family A254_01026 PF00829 Ribosomal prokaryotic L21 protein A254_01027 PF01016 Ribosomal L27 protein A254_01029 PF01926 50S ribosome-binding GTPase A254_01029 PF01018 GTP1/OBG A254_01030 PF00696 Amino acid kinase family A254_01030 PF01472 PUA domain A254_01033 PF13411 MerR HTH family regulatory protein A254_01034 PF02203 Tar ligand binding domain homologue A254_01034 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A254_01034 PF00672 HAMP domain A254_01035 PF00117 Glutamine amidotransferase class-I A254_01036 PF02885 Glycosyl transferase family, helical bundle domain A254_01036 PF00591 Glycosyl transferase family, a/b domain A254_01037 PF00717 Peptidase S24-like A254_01037 PF01726 LexA DNA binding domain A254_01038 PF00472 RF-1 domain A254_01038 PF03462 PCRF domain A254_01039 PF00912 Transglycosylase A254_01039 PF00905 Penicillin binding protein transpeptidase domain A254_01039 PF17092 Penicillin-binding protein OB-like domain A254_01041 PF01520 N-acetylmuramoyl-L-alanine amidase A254_01044 PF00575 S1 RNA binding domain A254_01044 PF12111 Polyribonucleotide phosphorylase C terminal A254_01044 PF10150 Ribonuclease E/G family A254_01048 PF03315 Serine dehydratase beta chain A254_01048 PF03313 Serine dehydratase alpha chain A254_01049 PF00593 TonB dependent receptor A254_01049 PF07660 Secretin and TonB N terminus short domain A254_01049 PF07715 TonB-dependent Receptor Plug Domain A254_01051 PF01474 Class-II DAHP synthetase family A254_01052 PF01406 tRNA synthetases class I (C) catalytic domain A254_01054 PF12848 ABC transporter A254_01054 PF00005 ABC transporter A254_01055 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain A254_01055 PF05221 S-adenosyl-L-homocysteine hydrolase A254_01056 PF04551 GcpE protein A254_01057 PF01791 DeoC/LacD family aldolase A254_01058 PF00162 Phosphoglycerate kinase A254_01059 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A254_01059 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A254_01060 PF02779 Transketolase, pyrimidine binding domain A254_01060 PF02780 Transketolase, C-terminal domain A254_01060 PF00456 Transketolase, thiamine diphosphate binding domain A254_01064 PF01964 Radical SAM ThiC family A254_01064 PF13667 ThiC-associated domain A254_01066 PF03009 Glycerophosphoryl diester phosphodiesterase family A254_01067 PF00691 OmpA family A254_01068 PF04052 TolB amino-terminal domain A254_01068 PF07676 WD40-like Beta Propeller Repeat A254_01070 PF02472 Biopolymer transport protein ExbD/TolR A254_01071 PF01618 MotA/TolQ/ExbB proton channel family A254_01072 PF03061 Thioesterase superfamily A254_01073 PF17864 RuvB AAA lid domain A254_01073 PF05491 RuvB C-terminal winged helix domain A254_01073 PF05496 Holliday junction DNA helicase RuvB P-loop domain A254_01074 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A254_01074 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A254_01076 PF07499 RuvA, C-terminal domain A254_01076 PF01330 RuvA N terminal domain A254_01077 PF02075 Crossover junction endodeoxyribonuclease RuvC A254_01078 PF01709 Transcriptional regulator A254_01079 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) A254_01080 PF00224 Pyruvate kinase, barrel domain A254_01080 PF02887 Pyruvate kinase, alpha/beta domain A254_01082 PF02390 Putative methyltransferase A254_01085 PF02910 Fumarate reductase flavoprotein C-term A254_01085 PF00890 FAD binding domain A254_01086 PF00005 ABC transporter A254_01087 PF01168 Alanine racemase, N-terminal domain A254_01088 PF01451 Low molecular weight phosphotyrosine protein phosphatase A254_01099 PF01569 PAP2 superfamily A254_01104 PF04073 Aminoacyl-tRNA editing domain A254_01107 PF12002 MgsA AAA+ ATPase C terminal A254_01107 PF16193 AAA C-terminal domain A254_01107 PF00004 ATPase family associated with various cellular activities (AAA) A254_01109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A254_01109 PF03466 LysR substrate binding domain A254_01111 PF06965 Na+/H+ antiporter 1 A254_01112 PF03063 Prismane/CO dehydrogenase family A254_01113 PF02082 Transcriptional regulator A254_01114 PF01063 Amino-transferase class IV A254_01115 PF00591 Glycosyl transferase family, a/b domain A254_01115 PF02885 Glycosyl transferase family, helical bundle domain A254_01115 PF00117 Glutamine amidotransferase class-I A254_01116 PF04715 Anthranilate synthase component I, N terminal region A254_01116 PF00425 chorismate binding enzyme A254_01121 PF00893 Small Multidrug Resistance protein A254_01123 PF00694 Aconitase C-terminal domain A254_01124 PF00330 Aconitase family (aconitate hydratase) A254_01125 PF00144 Beta-lactamase A254_01125 PF11954 Domain of unknown function (DUF3471) A254_01129 PF01066 CDP-alcohol phosphatidyltransferase A254_01131 PF06968 Biotin and Thiamin Synthesis associated domain A254_01131 PF04055 Radical SAM superfamily A254_01133 PF00106 short chain dehydrogenase A254_01136 PF04607 Region found in RelA / SpoT proteins A254_01136 PF13291 ACT domain A254_01136 PF02824 TGS domain A254_01137 PF00672 HAMP domain A254_01137 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A254_01137 PF02203 Tar ligand binding domain homologue A254_01139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_01139 PF02895 Signal transducing histidine kinase, homodimeric domain A254_01139 PF01584 CheW-like domain A254_01139 PF01627 Hpt domain A254_01140 PF01739 CheR methyltransferase, SAM binding domain A254_01140 PF03705 CheR methyltransferase, all-alpha domain A254_01141 PF00072 Response regulator receiver domain A254_01141 PF01339 CheB methylesterase A254_01142 PF03975 CheD chemotactic sensory transduction A254_01144 PF01584 CheW-like domain A254_01145 PF01938 TRAM domain A254_01145 PF00919 Uncharacterized protein family UPF0004 A254_01145 PF04055 Radical SAM superfamily A254_01146 PF02562 PhoH-like protein A254_01147 PF02130 Uncharacterized protein family UPF0054 A254_01148 PF03471 Transporter associated domain A254_01148 PF00571 CBS domain A254_01149 PF07995 Glucose / Sorbosone dehydrogenase A254_01150 PF04399 Glutaredoxin 2, C terminal domain A254_01150 PF13417 Glutathione S-transferase, N-terminal domain A254_01157 PF02595 Glycerate kinase family A254_01159 PF01380 SIS domain A254_01160 PF01925 Sulfite exporter TauE/SafE A254_01161 PF01047 MarR family A254_01162 PF00561 alpha/beta hydrolase fold A254_01163 PF07690 Major Facilitator Superfamily A254_01165 PF01810 LysE type translocator A254_01168 PF02545 Maf-like protein A254_01169 PF01488 Shikimate / quinate 5-dehydrogenase A254_01169 PF18317 Shikimate 5'-dehydrogenase C-terminal domain A254_01169 PF08501 Shikimate dehydrogenase substrate binding domain A254_01170 PF01121 Dephospho-CoA kinase A254_01171 PF00929 Exonuclease A254_01172 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein A254_01172 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus A254_01173 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A254_01176 PF03692 Putative zinc- or iron-chelating domain A254_01179 PF04471 Restriction endonuclease A254_01179 PF14338 Mrr N-terminal domain A254_01180 PF01808 AICARFT/IMPCHase bienzyme A254_01180 PF02142 MGS-like domain A254_01184 PF02754 Cysteine-rich domain A254_01185 PF02589 LUD domain A254_01185 PF13183 4Fe-4S dicluster domain A254_01185 PF11870 Domain of unknown function (DUF3390) A254_01188 PF00834 Ribulose-phosphate 3 epimerase family A254_01189 PF01189 16S rRNA methyltransferase RsmB/F A254_01189 PF01029 NusB family A254_01190 PF01025 GrpE A254_01191 PF01628 HrcA protein C terminal domain A254_01192 PF03725 3' exoribonuclease family, domain 2 A254_01192 PF01138 3' exoribonuclease family, domain 1 A254_01193 PF01725 Ham1 family A254_01194 PF04055 Radical SAM superfamily A254_01194 PF06969 HemN C-terminal domain A254_01197 PF00667 FAD binding domain A254_01197 PF00258 Flavodoxin A254_01197 PF00175 Oxidoreductase NAD-binding domain A254_01198 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain A254_01198 PF01077 Nitrite and sulphite reductase 4Fe-4S domain A254_01199 PF01507 Phosphoadenosine phosphosulfate reductase family A254_01200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A254_01200 PF10414 Sirohaem synthase dimerisation region A254_01201 PF01507 Phosphoadenosine phosphosulfate reductase family A254_01202 PF00009 Elongation factor Tu GTP binding domain A254_01204 PF00155 Aminotransferase class I and II A254_01205 PF07715 TonB-dependent Receptor Plug Domain A254_01205 PF00593 TonB dependent receptor A254_01206 PF01208 Uroporphyrinogen decarboxylase (URO-D) A254_01208 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A254_01208 PF07498 Rho termination factor, N-terminal domain A254_01208 PF07497 Rho termination factor, RNA-binding domain A254_01209 PF00107 Zinc-binding dehydrogenase A254_01209 PF08240 Alcohol dehydrogenase GroES-like domain A254_01210 PF01738 Dienelactone hydrolase family A254_01211 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A254_01211 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A254_01212 PF01926 50S ribosome-binding GTPase A254_01212 PF10396 GTP-binding protein TrmE N-terminus A254_01212 PF12631 MnmE helical domain A254_01213 PF07715 TonB-dependent Receptor Plug Domain A254_01213 PF00593 TonB dependent receptor A254_01214 PF00248 Aldo/keto reductase family A254_01215 PF08450 SMP-30/Gluconolactonase/LRE-like region A254_01216 PF13932 GidA associated domain A254_01216 PF01134 Glucose inhibited division protein A A254_01217 PF02527 rRNA small subunit methyltransferase G A254_01218 PF13614 AAA domain A254_01219 PF02195 ParB-like nuclease domain A254_01219 PF17762 HTH domain found in ParB protein A254_01220 PF07690 Major Facilitator Superfamily A254_01222 PF02423 Ornithine cyclodeaminase/mu-crystallin family A254_01223 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A254_01223 PF03466 LysR substrate binding domain A254_01225 PF02569 Pantoate-beta-alanine ligase A254_01226 PF02548 Ketopantoate hydroxymethyltransferase A254_01230 PF00753 Metallo-beta-lactamase superfamily A254_01230 PF03772 Competence protein A254_01231 PF00749 tRNA synthetases class I (E and Q), catalytic domain A254_01232 PF00285 Citrate synthase, C-terminal domain A254_01233 PF16736 Single Cache-like A254_01233 PF00989 PAS fold A254_01233 PF00512 His Kinase A (phospho-acceptor) domain A254_01233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_01238 PF00534 Glycosyl transferases group 1 A254_01238 PF13439 Glycosyltransferase Family 4 A254_01239 PF02463 RecF/RecN/SMC N terminal domain A254_01240 PF00390 Malic enzyme, N-terminal domain A254_01240 PF03949 Malic enzyme, NAD binding domain A254_01241 PF00118 TCP-1/cpn60 chaperonin family A254_01242 PF00166 Chaperonin 10 Kd subunit A254_01243 PF01343 Peptidase family S49 A254_01246 PF00884 Sulfatase A254_01247 PF05159 Capsule polysaccharide biosynthesis protein A254_01248 PF17764 3′ DNA-binding domain (3′BD) A254_01248 PF00270 DEAD/DEAH box helicase A254_01248 PF18319 PriA DNA helicase Cys-rich region (CRR) domain A254_01248 PF18074 Primosomal protein N C-terminal domain A254_01251 PF00202 Aminotransferase class-III A254_01252 PF00155 Aminotransferase class I and II A254_01254 PF13649 Methyltransferase domain A254_01255 PF00589 Phage integrase family A254_01255 PF02899 Phage integrase, N-terminal SAM-like domain A254_01256 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain A254_01256 PF02951 Prokaryotic glutathione synthetase, N-terminal domain A254_01257 PF01926 50S ribosome-binding GTPase A254_01257 PF06071 Protein of unknown function (DUF933) A254_01258 PF01195 Peptidyl-tRNA hydrolase A254_01259 PF14693 Ribosomal protein TL5, C-terminal domain A254_01259 PF01386 Ribosomal L25p family A254_01262 PF05190 MutS family domain IV A254_01262 PF01624 MutS domain I A254_01262 PF05188 MutS domain II A254_01262 PF05192 MutS domain III A254_01262 PF00488 MutS domain V A254_01264 PF05198 Translation initiation factor IF-3, N-terminal domain A254_01264 PF00707 Translation initiation factor IF-3, C-terminal domain A254_01265 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus A254_01265 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus A254_01266 PF00814 Glycoprotease family A254_01267 PF03900 Porphobilinogen deaminase, C-terminal domain A254_01267 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain A254_01270 PF01783 Ribosomal L32p protein family A254_01271 PF02504 Fatty acid synthesis protein A254_01272 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III A254_01272 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal A254_01274 PF02699 Preprotein translocase subunit A254_01275 PF02355 Protein export membrane protein A254_01275 PF07549 SecD/SecF GG Motif A254_01276 PF07549 SecD/SecF GG Motif A254_01276 PF02355 Protein export membrane protein A254_01277 PF00294 pfkB family carbohydrate kinase A254_01279 PF14821 Threonine synthase N terminus A254_01279 PF00291 Pyridoxal-phosphate dependent enzyme A254_01280 PF05193 Peptidase M16 inactive domain A254_01280 PF00675 Insulinase (Peptidase family M16) A254_01283 PF00857 Isochorismatase family A254_01284 PF05145 Transition state regulatory protein AbrB A254_01285 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A254_01286 PF02677 Epoxyqueuosine reductase QueH A254_01287 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A254_01288 PF05145 Transition state regulatory protein AbrB A254_01291 PF00490 Delta-aminolevulinic acid dehydratase A254_01292 PF08264 Anticodon-binding domain of tRNA A254_01292 PF00133 tRNA synthetases class I (I, L, M and V) A254_01292 PF10458 Valyl tRNA synthetase tRNA binding arm A254_01297 PF00462 Glutaredoxin A254_01300 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain A254_01300 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain A254_01302 PF03309 Type III pantothenate kinase A254_01302 PF03099 Biotin/lipoate A/B protein ligase family A254_01302 PF02237 Biotin protein ligase C terminal domain A254_01303 PF03309 Type III pantothenate kinase A254_01304 PF12706 Beta-lactamase superfamily domain A254_01304 PF17770 Ribonuclease J C-terminal domain A254_01304 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain A254_01312 PF13419 Haloacid dehalogenase-like hydrolase A254_01313 PF03060 Nitronate monooxygenase A254_01325 PF00117 Glutamine amidotransferase class-I A254_01326 PF00155 Aminotransferase class I and II A254_01326 PF00392 Bacterial regulatory proteins, gntR family A254_01327 PF00701 Dihydrodipicolinate synthetase family A254_01328 PF00258 Flavodoxin A254_01333 PF00005 ABC transporter A254_01334 PF08274 PhnA Zinc-Ribbon A254_01334 PF03831 PhnA domain A254_01335 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A254_01335 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A254_01339 PF03459 TOBE domain A254_01340 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain A254_01340 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain A254_01341 PF03206 Nitrogen fixation protein NifW A254_01342 PF00682 HMGL-like A254_01343 PF00266 Aminotransferase class-V A254_01345 PF01521 Iron-sulphur cluster biosynthesis A254_01346 PF04891 NifQ A254_01347 PF13237 4Fe-4S dicluster domain A254_01348 PF03270 Protein of unknown function, DUF269 A254_01349 PF02579 Dinitrogenase iron-molybdenum cofactor A254_01350 PF00148 Nitrogenase component 1 type Oxidoreductase A254_01351 PF00148 Nitrogenase component 1 type Oxidoreductase A254_01352 PF00148 Nitrogenase component 1 type Oxidoreductase A254_01352 PF11844 Domain of unknown function (DUF3364) A254_01353 PF00148 Nitrogenase component 1 type Oxidoreductase A254_01354 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family A254_01355 PF00593 TonB dependent receptor A254_01355 PF07715 TonB-dependent Receptor Plug Domain A254_01357 PF06988 NifT/FixU protein A254_01358 PF04319 NifZ domain A254_01359 PF12838 4Fe-4S dicluster domain A254_01360 PF04055 Radical SAM superfamily A254_01360 PF02579 Dinitrogenase iron-molybdenum cofactor A254_01361 PF01590 GAF domain A254_01361 PF02954 Bacterial regulatory protein, Fis family A254_01361 PF00158 Sigma-54 interaction domain A254_01363 PF02508 Rnf-Nqr subunit, membrane protein A254_01364 PF04060 Putative Fe-S cluster A254_01365 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit A254_01365 PF13237 4Fe-4S dicluster domain A254_01365 PF13375 RnfC Barrel sandwich hybrid domain A254_01365 PF10531 SLBB domain A254_01366 PF03116 NQR2, RnfD, RnfE family A254_01367 PF04205 FMN-binding domain A254_01368 PF02508 Rnf-Nqr subunit, membrane protein A254_01369 PF03658 RnfH family Ubiquitin A254_01371 PF12464 Maltose acetyltransferase A254_01371 PF14602 Hexapeptide repeat of succinyl-transferase A254_01372 PF13419 Haloacid dehalogenase-like hydrolase A254_01373 PF13520 Amino acid permease A254_01374 PF00216 Bacterial DNA-binding protein A254_01375 PF02567 Phenazine biosynthesis-like protein A254_01376 PF00575 S1 RNA binding domain A254_01377 PF02224 Cytidylate kinase A254_01378 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A254_01381 PF03466 LysR substrate binding domain A254_01381 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A254_01382 PF00920 Dehydratase family A254_01384 PF00005 ABC transporter A254_01384 PF00664 ABC transporter transmembrane region A254_01388 PF00924 Mechanosensitive ion channel A254_01393 PF01433 Peptidase family M1 domain A254_01396 PF00248 Aldo/keto reductase family A254_01397 PF08240 Alcohol dehydrogenase GroES-like domain A254_01397 PF00107 Zinc-binding dehydrogenase A254_01398 PF00465 Iron-containing alcohol dehydrogenase A254_01399 PF14698 Argininosuccinate lyase C-terminal A254_01399 PF00206 Lyase A254_01401 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain A254_01401 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain A254_01402 PF00483 Nucleotidyl transferase A254_01403 PF01544 CorA-like Mg2+ transporter protein A254_01404 PF01471 Putative peptidoglycan binding domain A254_01404 PF03734 L,D-transpeptidase catalytic domain A254_01406 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A254_01408 PF13525 Outer membrane lipoprotein A254_01410 PF02447 GntP family permease A254_01411 PF00303 Thymidylate synthase A254_01412 PF00171 Aldehyde dehydrogenase family A254_01413 PF00970 Oxidoreductase FAD-binding domain A254_01413 PF00175 Oxidoreductase NAD-binding domain A254_01417 PF04333 MlaA lipoprotein A254_01418 PF01022 Bacterial regulatory protein, arsR family A254_01419 PF02219 Methylenetetrahydrofolate reductase A254_01420 PF02310 B12 binding domain A254_01420 PF02607 B12 binding domain A254_01420 PF02965 Vitamin B12 dependent methionine synthase, activation domain A254_01420 PF02574 Homocysteine S-methyltransferase A254_01420 PF00809 Pterin binding enzyme A254_01421 PF02607 B12 binding domain A254_01421 PF00809 Pterin binding enzyme A254_01421 PF02310 B12 binding domain A254_01421 PF02965 Vitamin B12 dependent methionine synthase, activation domain A254_01421 PF02574 Homocysteine S-methyltransferase A254_01423 PF00009 Elongation factor Tu GTP binding domain A254_01423 PF06421 GTP-binding protein LepA C-terminus A254_01423 PF03144 Elongation factor Tu domain 2 A254_01423 PF00679 Elongation factor G C-terminus A254_01425 PF07694 5TMR of 5TMR-LYT A254_01425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_01425 PF06580 Histidine kinase A254_01426 PF04397 LytTr DNA-binding domain A254_01426 PF00072 Response regulator receiver domain A254_01429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A254_01429 PF03466 LysR substrate binding domain A254_01430 PF00578 AhpC/TSA family A254_01431 PF00132 Bacterial transferase hexapeptide (six repeats) A254_01434 PF00155 Aminotransferase class I and II A254_01435 PF02617 ATP-dependent Clp protease adaptor protein ClpS A254_01436 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A254_01439 PF00107 Zinc-binding dehydrogenase A254_01439 PF08240 Alcohol dehydrogenase GroES-like domain A254_01441 PF01192 RNA polymerase Rpb6 A254_01442 PF00480 ROK family A254_01445 PF01618 MotA/TolQ/ExbB proton channel family A254_01446 PF02472 Biopolymer transport protein ExbD/TolR A254_01447 PF02472 Biopolymer transport protein ExbD/TolR A254_01448 PF01165 Ribosomal protein S21 A254_01449 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A254_01449 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase A254_01450 PF01594 AI-2E family transporter A254_01451 PF10502 Signal peptidase, peptidase S26 A254_01452 PF01648 4'-phosphopantetheinyl transferase superfamily A254_01453 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ A254_01454 PF00156 Phosphoribosyl transferase domain A254_01456 PF02190 ATP-dependent protease La (LON) substrate-binding domain A254_01456 PF05362 Lon protease (S16) C-terminal proteolytic domain A254_01456 PF00004 ATPase family associated with various cellular activities (AAA) A254_01457 PF01494 FAD binding domain A254_01458 PF09397 Ftsk gamma domain A254_01458 PF13491 4TM region of DNA translocase FtsK/SpoIIIE A254_01458 PF17854 FtsK alpha domain A254_01458 PF01580 FtsK/SpoIIIE family A254_01459 PF03548 Outer membrane lipoprotein carrier protein LolA A254_01461 PF03372 Endonuclease/Exonuclease/phosphatase family A254_01462 PF00925 GTP cyclohydrolase II A254_01463 PF01638 HxlR-like helix-turn-helix A254_01467 PF01264 Chorismate synthase A254_01469 PF03631 Virulence factor BrkB A254_01470 PF00684 DnaJ central domain A254_01470 PF00226 DnaJ domain A254_01470 PF01556 DnaJ C terminal domain A254_01471 PF01979 Amidohydrolase family A254_01473 PF00709 Adenylosuccinate synthetase A254_01474 PF13393 Histidyl-tRNA synthetase A254_01475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A254_01475 PF01842 ACT domain A254_01475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A254_01477 PF00710 Asparaginase, N-terminal A254_01477 PF17763 Glutaminase/Asparaginase C-terminal domain A254_01478 PF00155 Aminotransferase class I and II A254_01479 PF06826 Predicted Permease Membrane Region A254_01479 PF02080 TrkA-C domain A254_01482 PF01842 ACT domain A254_01482 PF00800 Prephenate dehydratase A254_01483 PF14815 NUDIX domain A254_01483 PF00730 HhH-GPD superfamily base excision DNA repair protein A254_01486 PF00248 Aldo/keto reductase family A254_01493 PF03572 Peptidase family S41 A254_01493 PF13180 PDZ domain A254_01495 PF02590 Predicted SPOUT methyltransferase A254_01497 PF01467 Cytidylyltransferase-like A254_01498 PF00171 Aldehyde dehydrogenase family A254_01500 PF00004 ATPase family associated with various cellular activities (AAA) A254_01500 PF01434 Peptidase family M41 A254_01500 PF17862 AAA+ lid domain A254_01501 PF01171 PP-loop family A254_01505 PF08241 Methyltransferase domain A254_01506 PF13840 ACT domain A254_01506 PF01842 ACT domain A254_01506 PF00696 Amino acid kinase family A254_01507 PF03060 Nitronate monooxygenase A254_01508 PF02896 PEP-utilising enzyme, TIM barrel domain A254_01508 PF00391 PEP-utilising enzyme, mobile domain A254_01508 PF05524 PEP-utilising enzyme, N-terminal A254_01509 PF00144 Beta-lactamase A254_01510 PF08450 SMP-30/Gluconolactonase/LRE-like region A254_01511 PF03167 Uracil DNA glycosylase superfamily A254_01512 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) A254_01514 PF00270 DEAD/DEAH box helicase A254_01514 PF17757 UvrB interaction domain A254_01514 PF02559 CarD-like/TRCF domain A254_01514 PF03461 TRCF domain A254_01514 PF00271 Helicase conserved C-terminal domain A254_01515 PF00270 DEAD/DEAH box helicase A254_01515 PF00271 Helicase conserved C-terminal domain A254_01515 PF17191 RecG wedge domain A254_01516 PF00579 tRNA synthetases class I (W and Y) A254_01517 PF03702 Anhydro-N-acetylmuramic acid kinase A254_01520 PF00579 tRNA synthetases class I (W and Y) A254_01521 PF03023 Lipid II flippase MurJ A254_01522 PF02556 Preprotein translocase subunit SecB A254_01525 PF06725 3D domain A254_01525 PF03562 MltA specific insert domain A254_01528 PF07687 Peptidase dimerisation domain A254_01528 PF01546 Peptidase family M20/M25/M40 A254_01529 PF00593 TonB dependent receptor A254_01529 PF07715 TonB-dependent Receptor Plug Domain A254_01533 PF01926 50S ribosome-binding GTPase A254_01534 PF02096 60Kd inner membrane protein A254_01534 PF14849 YidC periplasmic domain A254_01535 PF00825 Ribonuclease P A254_01536 PF13335 Magnesium chelatase, subunit ChlI C-terminal A254_01536 PF01078 Magnesium chelatase, subunit ChlI A254_01537 PF03979 Sigma-70 factor, region 1.1 A254_01537 PF04545 Sigma-70, region 4 A254_01537 PF00140 Sigma-70 factor, region 1.2 A254_01537 PF04542 Sigma-70 region 2 A254_01537 PF04539 Sigma-70 region 3 A254_01537 PF04546 Sigma-70, non-essential region A254_01538 PF01807 CHC2 zinc finger A254_01538 PF08275 DNA primase catalytic core, N-terminal domain A254_01538 PF10410 DnaB-helicase binding domain of primase A254_01538 PF08278 DNA primase DnaG DnaB-binding A254_01541 PF00117 Glutamine amidotransferase class-I A254_01541 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain A254_01542 PF02142 MGS-like domain A254_01542 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain A254_01542 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A254_01543 PF01272 Transcription elongation factor, GreA/GreB, C-term A254_01543 PF03449 Transcription elongation factor, N-terminal A254_01549 PF00113 Enolase, C-terminal TIM barrel domain A254_01549 PF03952 Enolase, N-terminal domain A254_01551 PF00676 Dehydrogenase E1 component A254_01552 PF00364 Biotin-requiring enzyme A254_01552 PF02779 Transketolase, pyrimidine binding domain A254_01552 PF02780 Transketolase, C-terminal domain A254_01554 PF04273 Putative phosphatase (DUF442) A254_01554 PF00753 Metallo-beta-lactamase superfamily A254_01556 PF00075 RNase H A254_01557 PF01636 Phosphotransferase enzyme family A254_01559 PF13292 1-deoxy-D-xylulose-5-phosphate synthase A254_01559 PF02779 Transketolase, pyrimidine binding domain A254_01559 PF02780 Transketolase, C-terminal domain A254_01560 PF00465 Iron-containing alcohol dehydrogenase A254_01562 PF01168 Alanine racemase, N-terminal domain A254_01562 PF00842 Alanine racemase, C-terminal domain A254_01563 PF02405 Permease MlaE A254_01564 PF00005 ABC transporter A254_01565 PF01588 Putative tRNA binding domain A254_01566 PF01925 Sulfite exporter TauE/SafE A254_01567 PF17755 UvrA DNA-binding domain A254_01567 PF17760 UvrA interaction domain A254_01569 PF00210 Ferritin-like domain A254_01570 PF02463 RecF/RecN/SMC N terminal domain A254_01571 PF00986 DNA gyrase B subunit, carboxyl terminus A254_01571 PF00204 DNA gyrase B A254_01571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A254_01571 PF01751 Toprim domain A254_01580 PF02129 X-Pro dipeptidyl-peptidase (S15 family) A254_01582 PF07690 Major Facilitator Superfamily A254_01583 PF00106 short chain dehydrogenase A254_01584 PF03466 LysR substrate binding domain A254_01584 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A254_01587 PF02322 Cytochrome bd terminal oxidase subunit II A254_01588 PF01654 Cytochrome bd terminal oxidase subunit I A254_01589 PF02901 Pyruvate formate lyase-like A254_01589 PF01228 Glycine radical A254_01590 PF04055 Radical SAM superfamily A254_01593 PF02694 Uncharacterised BCR, YnfA/UPF0060 family A254_01597 PF00293 NUDIX domain A254_01598 PF00106 short chain dehydrogenase A254_01599 PF13537 Glutamine amidotransferase domain A254_01599 PF00156 Phosphoribosyl transferase domain A254_01600 PF04107 Glutamate-cysteine ligase family 2(GCS2) A254_01601 PF04452 RNA methyltransferase A254_01602 PF02769 AIR synthase related protein, C-terminal domain A254_01602 PF00586 AIR synthase related protein, N-terminal domain A254_01603 PF01029 NusB family A254_01604 PF00815 Histidinol dehydrogenase A254_01605 PF01634 ATP phosphoribosyltransferase A254_01607 PF13249 Squalene-hopene cyclase N-terminal domain A254_01607 PF13243 Squalene-hopene cyclase C-terminal domain A254_01609 PF00226 DnaJ domain A254_01610 PF07728 AAA domain (dynein-related subfamily) A254_01610 PF12556 Cobaltochelatase CobS subunit N terminal A254_01610 PF08406 CbbQ/NirQ/NorQ C-terminal A254_01611 PF11775 Cobalamin biosynthesis protein CobT VWA domain A254_01611 PF06213 Cobalamin biosynthesis protein CobT A254_01612 PF00436 Single-strand binding protein family A254_01613 PF07670 Nucleoside recognition A254_01613 PF02421 Ferrous iron transport protein B A254_01613 PF07664 Ferrous iron transport protein B C terminus A254_01615 PF07733 Bacterial DNA polymerase III alpha NTPase domain A254_01615 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A254_01615 PF14579 Helix-hairpin-helix motif A254_01615 PF02811 PHP domain A254_01618 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase A254_01619 PF01380 SIS domain A254_01619 PF00571 CBS domain A254_01620 PF13533 Biotin-lipoyl like A254_01621 PF00873 AcrB/AcrD/AcrF family A254_01622 PF00873 AcrB/AcrD/AcrF family A254_01623 PF02321 Outer membrane efflux protein A254_01625 PF07715 TonB-dependent Receptor Plug Domain A254_01625 PF00593 TonB dependent receptor A254_01628 PF14572 Phosphoribosyl synthetase-associated domain A254_01628 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase A254_01629 PF00459 Inositol monophosphatase family A254_01630 PF01632 Ribosomal protein L35 A254_01631 PF00453 Ribosomal protein L20 A254_01632 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain A254_01632 PF01409 tRNA synthetases class II core domain (F) A254_01633 PF03484 tRNA synthetase B5 domain A254_01633 PF03147 Ferredoxin-fold anticodon binding domain A254_01633 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain A254_01633 PF03483 B3/4 domain A254_01633 PF01588 Putative tRNA binding domain A254_01634 PF00005 ABC transporter A254_01634 PF00664 ABC transporter transmembrane region A254_01636 PF05175 Methyltransferase small domain A254_01636 PF17827 PrmC N-terminal domain A254_01637 PF00472 RF-1 domain A254_01637 PF03462 PCRF domain A254_01638 PF13393 Histidyl-tRNA synthetase A254_01639 PF00719 Inorganic pyrophosphatase A254_01642 PF00475 Imidazoleglycerol-phosphate dehydratase A254_01643 PF00117 Glutamine amidotransferase class-I A254_01644 PF00977 Histidine biosynthesis protein A254_01645 PF00977 Histidine biosynthesis protein A254_01646 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase A254_01647 PF01230 HIT domain A254_01648 PF13520 Amino acid permease A254_01649 PF00311 Phosphoenolpyruvate carboxylase A254_01650 PF01923 Cobalamin adenosyltransferase A254_01651 PF00696 Amino acid kinase family A254_01655 PF02348 Cytidylyltransferase A254_01656 PF00793 DAHP synthetase I family A254_01657 PF05231 MASE1 A254_01657 PF00563 EAL domain A254_01659 PF01966 HD domain A254_01660 PF00580 UvrD/REP helicase N-terminal domain A254_01660 PF13361 UvrD-like helicase C-terminal domain A254_01662 PF08442 ATP-grasp domain A254_01662 PF00549 CoA-ligase A254_01663 PF01012 Electron transfer flavoprotein domain A254_01664 PF00766 Electron transfer flavoprotein FAD-binding domain A254_01664 PF01012 Electron transfer flavoprotein domain A254_01665 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase A254_01667 PF07715 TonB-dependent Receptor Plug Domain A254_01667 PF00593 TonB dependent receptor A254_01677 PF02796 Helix-turn-helix domain of resolvase A254_01677 PF00239 Resolvase, N terminal domain A254_01678 PF07690 Major Facilitator Superfamily A254_01680 PF00875 DNA photolyase A254_01680 PF03441 FAD binding domain of DNA photolyase A254_01681 PF01232 Mannitol dehydrogenase Rossmann domain A254_01681 PF08125 Mannitol dehydrogenase C-terminal domain A254_01685 PF02091 Glycyl-tRNA synthetase alpha subunit A254_01686 PF05746 DALR anticodon binding domain A254_01686 PF02092 Glycyl-tRNA synthetase beta subunit A254_01687 PF01943 Polysaccharide biosynthesis protein A254_01689 PF01266 FAD dependent oxidoreductase A254_01691 PF00795 Carbon-nitrogen hydrolase A254_01692 PF13404 AsnC-type helix-turn-helix domain A254_01692 PF01037 Lrp/AsnC ligand binding domain A254_01694 PF12100 Domain of unknown function (DUF3576) A254_01695 PF13603 Leucyl-tRNA synthetase, Domain 2 A254_01695 PF00133 tRNA synthetases class I (I, L, M and V) A254_01695 PF08264 Anticodon-binding domain of tRNA A254_01700 PF13533 Biotin-lipoyl like A254_01702 PF00781 Diacylglycerol kinase catalytic domain A254_01703 PF04002 RadC-like JAB domain A254_01704 PF02581 Thiamine monophosphate synthase A254_01705 PF17871 AAA lid domain A254_01705 PF02861 Clp amino terminal domain, pathogenicity island component A254_01705 PF07724 AAA domain (Cdc48 subfamily) A254_01705 PF10431 C-terminal, D2-small domain, of ClpB protein A254_01705 PF00004 ATPase family associated with various cellular activities (AAA) A254_01706 PF00675 Insulinase (Peptidase family M16) A254_01706 PF05193 Peptidase M16 inactive domain A254_01707 PF00675 Insulinase (Peptidase family M16) A254_01707 PF05193 Peptidase M16 inactive domain A254_01708 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain A254_01708 PF02222 ATP-grasp domain A254_01709 PF00731 AIR carboxylase A254_01710 PF01040 UbiA prenyltransferase family A254_01711 PF00271 Helicase conserved C-terminal domain A254_01711 PF00270 DEAD/DEAH box helicase A254_01714 PF00814 Glycoprotease family A254_01716 PF05443 ROS/MUCR transcriptional regulator protein A254_01717 PF01475 Ferric uptake regulator family A254_01718 PF00210 Ferritin-like domain A254_01720 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region A254_01720 PF00326 Prolyl oligopeptidase family A254_01721 PF01118 Semialdehyde dehydrogenase, NAD binding domain A254_01721 PF02774 Semialdehyde dehydrogenase, dimerisation domain A254_01722 PF00561 alpha/beta hydrolase fold A254_01723 PF00072 Response regulator receiver domain A254_01724 PF08281 Sigma-70, region 4 A254_01724 PF04542 Sigma-70 region 2 A254_01725 PF01551 Peptidase family M23 A254_01725 PF08525 Opacity-associated protein A N-terminal motif A254_01725 PF01476 LysM domain A254_01726 PF01521 Iron-sulphur cluster biosynthesis A254_01727 PF03372 Endonuclease/Exonuclease/phosphatase family A254_01740 PF00486 Transcriptional regulatory protein, C terminal A254_01740 PF00072 Response regulator receiver domain A254_01743 PF01926 50S ribosome-binding GTPase A254_01743 PF07650 KH domain A254_01744 PF00202 Aminotransferase class-III A254_01750 PF00035 Double-stranded RNA binding motif A254_01750 PF14622 Ribonuclease-III-like A254_01752 PF00106 short chain dehydrogenase A254_01754 PF00795 Carbon-nitrogen hydrolase A254_01755 PF04371 Porphyromonas-type peptidyl-arginine deiminase A254_01756 PF00163 Ribosomal protein S4/S9 N-terminal domain A254_01756 PF01479 S4 domain A254_01757 PF00990 Diguanylate cyclase, GGDEF domain A254_01758 PF04055 Radical SAM superfamily A254_01762 PF00205 Thiamine pyrophosphate enzyme, central domain A254_01762 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A254_01762 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A254_01763 PF01649 Ribosomal protein S20 A254_01764 PF01638 HxlR-like helix-turn-helix A254_01772 PF13614 AAA domain A254_01775 PF00171 Aldehyde dehydrogenase family A254_01777 PF07715 TonB-dependent Receptor Plug Domain A254_01777 PF00593 TonB dependent receptor A254_01778 PF07690 Major Facilitator Superfamily A254_01779 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A254_01779 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A254_01781 PF01263 Aldose 1-epimerase A254_01782 PF01116 Fructose-bisphosphate aldolase class-II A254_01783 PF00294 pfkB family carbohydrate kinase A254_01784 PF00465 Iron-containing alcohol dehydrogenase A254_01785 PF00291 Pyridoxal-phosphate dependent enzyme A254_01787 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A254_01788 PF00873 AcrB/AcrD/AcrF family A254_01789 PF13533 Biotin-lipoyl like A254_01791 PF02321 Outer membrane efflux protein A254_01792 PF00043 Glutathione S-transferase, C-terminal domain A254_01792 PF02798 Glutathione S-transferase, N-terminal domain A254_01793 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) A254_01793 PF12008 Type I restriction and modification enzyme - subunit R C terminal A254_01793 PF18766 SWI2/SNF2 ATPase A254_01795 PF01420 Type I restriction modification DNA specificity domain A254_01796 PF12161 HsdM N-terminal domain A254_01796 PF02384 N-6 DNA Methylase A254_01801 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ A254_01802 PF13614 AAA domain A254_01804 PF00593 TonB dependent receptor A254_01804 PF07715 TonB-dependent Receptor Plug Domain A254_01808 PF02086 D12 class N6 adenine-specific DNA methyltransferase A254_01823 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) A254_01833 PF04221 RelB antitoxin A254_01834 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ A254_01867 PF13614 AAA domain A254_01868 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ A254_01886 PF00005 ABC transporter A254_01886 PF13732 Domain of unknown function (DUF4162) A254_01887 PF00005 ABC transporter A254_01887 PF00664 ABC transporter transmembrane region A254_01888 PF00005 ABC transporter A254_01888 PF00664 ABC transporter transmembrane region A254_01890 PF12833 Helix-turn-helix domain A254_01892 PF07015 VirC1 protein A254_01894 PF00593 TonB dependent receptor A254_01894 PF07715 TonB-dependent Receptor Plug Domain A254_01895 PF13614 AAA domain A254_01895 PF00376 MerR family regulatory protein A254_01897 PF02661 Fic/DOC family A254_01912 PF14488 Domain of unknown function (DUF4434) A254_01914 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain A254_01914 PF13632 Glycosyl transferase family group 2 A254_01915 PF02350 UDP-N-acetylglucosamine 2-epimerase A254_01916 PF00004 ATPase family associated with various cellular activities (AAA) A254_01916 PF05362 Lon protease (S16) C-terminal proteolytic domain A254_01916 PF02190 ATP-dependent protease La (LON) substrate-binding domain A254_10001 PF03884 DNA gyrase inhibitor YacG A254_10004 PF02021 Uncharacterised protein family UPF0102 A254_10006 PF01609 Transposase DDE domain