locus-tag class description IPJ91_00025 PF00687 Ribosomal protein L1p/L10e family IPJ91_00030 PF03946 Ribosomal protein L11, N-terminal domain IPJ91_00030 PF00298 Ribosomal protein L11, RNA binding domain IPJ91_00035 PF00467 KOW motif IPJ91_00035 PF02357 Transcription termination factor nusG IPJ91_00050 PF00471 Ribosomal protein L33 IPJ91_00060 PF00588 SpoU rRNA Methylase family IPJ91_00060 PF08032 RNA 2'-O ribose methyltransferase substrate binding IPJ91_00100 PF00117 Glutamine amidotransferase class-I IPJ91_00100 PF06418 CTP synthase N-terminus IPJ91_00150 PF00905 Penicillin binding protein transpeptidase domain IPJ91_00155 PF02481 DNA recombination-mediator protein A IPJ91_00155 PF17782 DprA winged helix domain IPJ91_00160 PF00318 Ribosomal protein S2 IPJ91_00165 PF00889 Elongation factor TS IPJ91_00170 PF01765 Ribosome recycling factor IPJ91_00185 PF02163 Peptidase family M50 IPJ91_00185 PF17820 PDZ domain IPJ91_00220 PF09587 Bacterial capsule synthesis protein PGA_cap IPJ91_00235 PF12170 DNA polymerase III tau subunit V interacting with alpha IPJ91_00235 PF12169 DNA polymerase III subunits gamma and tau domain III IPJ91_00245 PF13662 Toprim domain IPJ91_00245 PF02132 RecR protein IPJ91_00255 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain IPJ91_00255 PF00753 Metallo-beta-lactamase superfamily IPJ91_00255 PF10996 Beta-Casp domain IPJ91_00300 PF08459 UvrC Helix-hairpin-helix N-terminal IPJ91_00300 PF02151 UvrB/uvrC motif IPJ91_00300 PF12826 Helix-hairpin-helix motif IPJ91_00300 PF01541 GIY-YIG catalytic domain IPJ91_00315 PF00953 Glycosyl transferase family 4 IPJ91_00410 PF03441 FAD binding domain of DNA photolyase IPJ91_00410 PF00875 DNA photolyase IPJ91_00470 PF00106 short chain dehydrogenase IPJ91_00505 PF02245 Methylpurine-DNA glycosylase (MPG) IPJ91_00520 PF01177 Asp/Glu/Hydantoin racemase IPJ91_00535 PF00535 Glycosyl transferase family 2 IPJ91_00565 PF01197 Ribosomal protein L31 IPJ91_00570 PF00005 ABC transporter IPJ91_00570 PF17760 UvrA interaction domain IPJ91_00570 PF17755 UvrA DNA-binding domain IPJ91_00575 PF07690 Major Facilitator Superfamily IPJ91_00580 PF01230 HIT domain IPJ91_00590 PF07690 Major Facilitator Superfamily IPJ91_00595 PF00005 ABC transporter IPJ91_00595 PF17755 UvrA DNA-binding domain IPJ91_00595 PF17760 UvrA interaction domain IPJ91_00605 PF18273 Type III R-M EcoP15I C-terminal domain IPJ91_00605 PF01555 DNA methylase IPJ91_00610 PF00817 impB/mucB/samB family IPJ91_00610 PF11799 impB/mucB/samB family C-terminal domain IPJ91_00610 PF11798 IMS family HHH motif IPJ91_00610 PF13438 Domain of unknown function (DUF4113) IPJ91_00635 PF17827 PrmC N-terminal domain IPJ91_00635 PF13847 Methyltransferase domain IPJ91_00640 PF00772 DnaB-like helicase N terminal domain IPJ91_00640 PF03796 DnaB-like helicase C terminal domain IPJ91_00645 PF00472 RF-1 domain IPJ91_00645 PF03462 PCRF domain IPJ91_00655 PF00230 Major intrinsic protein IPJ91_00680 PF01132 Elongation factor P (EF-P) OB domain IPJ91_00680 PF09285 Elongation factor P, C-terminal IPJ91_00680 PF08207 Elongation factor P (EF-P) KOW-like domain IPJ91_00695 PF00849 RNA pseudouridylate synthase IPJ91_00720 PF02899 Phage integrase, N-terminal SAM-like domain IPJ91_00720 PF00589 Phage integrase family IPJ91_00730 PF13180 PDZ domain IPJ91_00730 PF17820 PDZ domain IPJ91_00735 PF03572 Peptidase family S41 IPJ91_00735 PF01471 Putative peptidoglycan binding domain IPJ91_00735 PF17820 PDZ domain IPJ91_00745 PF12697 Alpha/beta hydrolase family IPJ91_00750 PF01084 Ribosomal protein S18 IPJ91_00755 PF00436 Single-strand binding protein family IPJ91_00760 PF01250 Ribosomal protein S6 IPJ91_00765 PF06071 Protein of unknown function (DUF933) IPJ91_00765 PF01926 50S ribosome-binding GTPase IPJ91_00775 PF07883 Cupin domain IPJ91_00780 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain IPJ91_00780 PF00591 Glycosyl transferase family, a/b domain IPJ91_00780 PF02885 Glycosyl transferase family, helical bundle domain IPJ91_00795 PF02698 DUF218 domain IPJ91_00800 PF00986 DNA gyrase B subunit, carboxyl terminus IPJ91_00800 PF00204 DNA gyrase B IPJ91_00800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPJ91_00800 PF01751 Toprim domain IPJ91_00810 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IPJ91_00810 PF00437 Type II/IV secretion system protein IPJ91_00815 PF00437 Type II/IV secretion system protein IPJ91_00820 PF00482 Type II secretion system (T2SS), protein F IPJ91_00835 PF07549 SecD/SecF GG Motif IPJ91_00835 PF02355 Protein export membrane protein IPJ91_00840 PF07549 SecD/SecF GG Motif IPJ91_00840 PF02355 Protein export membrane protein IPJ91_00885 PF13184 NusA-like KH domain IPJ91_00885 PF08529 NusA N-terminal domain IPJ91_00900 PF01783 Ribosomal L32p protein family IPJ91_00905 PF01029 NusB family IPJ91_00910 PF00035 Double-stranded RNA binding motif IPJ91_00910 PF14622 Ribonuclease-III-like IPJ91_00915 PF00886 Ribosomal protein S16 IPJ91_00920 PF02021 Uncharacterised protein family UPF0102 IPJ91_00930 PF00106 short chain dehydrogenase IPJ91_00935 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IPJ91_00935 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IPJ91_00940 PF08676 MutL C terminal dimerisation domain IPJ91_00940 PF01119 DNA mismatch repair protein, C-terminal domain IPJ91_00960 PF04011 LemA family IPJ91_00975 PF03725 3' exoribonuclease family, domain 2 IPJ91_00975 PF01138 3' exoribonuclease family, domain 1 IPJ91_00975 PF00575 S1 RNA binding domain IPJ91_00975 PF00013 KH domain IPJ91_00975 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IPJ91_00980 PF00561 alpha/beta hydrolase fold IPJ91_00985 PF00468 Ribosomal protein L34 IPJ91_00990 PF01207 Dihydrouridine synthase (Dus) IPJ91_01015 PF13361 UvrD-like helicase C-terminal domain IPJ91_01015 PF00580 UvrD/REP helicase N-terminal domain IPJ91_01025 PF00521 DNA gyrase/topoisomerase IV, subunit A IPJ91_01025 PF03989 DNA gyrase C-terminal domain, beta-propeller IPJ91_01045 PF17191 RecG wedge domain IPJ91_01045 PF00271 Helicase conserved C-terminal domain IPJ91_01045 PF00270 DEAD/DEAH box helicase IPJ91_01060 PF00005 ABC transporter IPJ91_01065 PF02073 Thermophilic metalloprotease (M29) IPJ91_01070 PF01546 Peptidase family M20/M25/M40 IPJ91_01095 PF17871 AAA lid domain IPJ91_01095 PF10431 C-terminal, D2-small domain, of ClpB protein IPJ91_01095 PF00004 ATPase family associated with various cellular activities (AAA) IPJ91_01095 PF02861 Clp amino terminal domain, pathogenicity island component IPJ91_01095 PF07724 AAA domain (Cdc48 subfamily) IPJ91_01100 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IPJ91_01100 PF01588 Putative tRNA binding domain IPJ91_01100 PF03147 Ferredoxin-fold anticodon binding domain IPJ91_01100 PF03484 tRNA synthetase B5 domain IPJ91_01100 PF03483 B3/4 domain IPJ91_01105 PF01409 tRNA synthetases class II core domain (F) IPJ91_01105 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IPJ91_01115 PF00453 Ribosomal protein L20 IPJ91_01125 PF05198 Translation initiation factor IF-3, N-terminal domain IPJ91_01125 PF00707 Translation initiation factor IF-3, C-terminal domain IPJ91_01130 PF01025 GrpE IPJ91_01160 PF01702 Queuine tRNA-ribosyltransferase IPJ91_01165 PF00398 Ribosomal RNA adenine dimethylase IPJ91_01175 PF00133 tRNA synthetases class I (I, L, M and V) IPJ91_01175 PF08264 Anticodon-binding domain of tRNA IPJ91_01175 PF13603 Leucyl-tRNA synthetase, Domain 2 IPJ91_01175 PF09334 tRNA synthetases class I (M) IPJ91_01195 PF17961 Bacterial Ig domain IPJ91_01195 PF00746 LPXTG cell wall anchor motif IPJ91_01195 PF17210 SdrD B-like domain IPJ91_01195 PF04650 YSIRK type signal peptide IPJ91_01195 PF10425 C-terminus of bacterial fibrinogen-binding adhesin IPJ91_01215 PF00583 Acetyltransferase (GNAT) family IPJ91_01215 PF04055 Radical SAM superfamily IPJ91_01215 PF16199 Radical_SAM C-terminal domain IPJ91_01220 PF00589 Phage integrase family IPJ91_01220 PF13495 Phage integrase, N-terminal SAM-like domain IPJ91_01275 PF00749 tRNA synthetases class I (E and Q), catalytic domain IPJ91_01280 PF00574 Clp protease IPJ91_01290 PF00486 Transcriptional regulatory protein, C terminal IPJ91_01290 PF00072 Response regulator receiver domain IPJ91_01325 PF05188 MutS domain II IPJ91_01325 PF01624 MutS domain I IPJ91_01325 PF05190 MutS family domain IV IPJ91_01325 PF05192 MutS domain III IPJ91_01325 PF00488 MutS domain V IPJ91_01330 PF01624 MutS domain I IPJ91_01330 PF05192 MutS domain III IPJ91_01330 PF05188 MutS domain II IPJ91_01330 PF05190 MutS family domain IV IPJ91_01330 PF00488 MutS domain V IPJ91_01345 PF01795 MraW methylase family IPJ91_01350 PF02381 MraZ protein, putative antitoxin-like IPJ91_01365 PF01336 OB-fold nucleic acid binding domain IPJ91_01365 PF00152 tRNA synthetases class II (D, K and N) IPJ91_01395 PF02780 Transketolase, C-terminal domain IPJ91_01395 PF02779 Transketolase, pyrimidine binding domain IPJ91_01400 PF00456 Transketolase, thiamine diphosphate binding domain IPJ91_01415 PF02502 Ribose/Galactose Isomerase IPJ91_01435 PF02559 CarD-like/TRCF domain IPJ91_01435 PF00270 DEAD/DEAH box helicase IPJ91_01435 PF00271 Helicase conserved C-terminal domain IPJ91_01435 PF03461 TRCF domain IPJ91_01435 PF17757 UvrB interaction domain IPJ91_01445 PF02195 ParB-like nuclease domain IPJ91_01445 PF17762 HTH domain found in ParB protein IPJ91_01455 PF00293 NUDIX domain IPJ91_01455 PF09297 NADH pyrophosphatase zinc ribbon domain IPJ91_01485 PF10502 Signal peptidase, peptidase S26 IPJ91_01495 PF01594 AI-2E family transporter IPJ91_01510 PF01016 Ribosomal L27 protein IPJ91_01520 PF00912 Transglycosylase IPJ91_01520 PF00905 Penicillin binding protein transpeptidase domain IPJ91_01535 PF01751 Toprim domain IPJ91_01535 PF13368 Topoisomerase C-terminal repeat IPJ91_01535 PF01131 DNA topoisomerase IPJ91_01545 PF07992 Pyridine nucleotide-disulphide oxidoreductase IPJ91_01565 PF01809 Putative membrane protein insertion efficiency factor IPJ91_01570 PF08245 Mur ligase middle domain IPJ91_01570 PF02875 Mur ligase family, glutamate ligase domain IPJ91_01570 PF01225 Mur ligase family, catalytic domain IPJ91_01575 PF05872 Bacterial protein of unknown function (DUF853) IPJ91_01590 PF00580 UvrD/REP helicase N-terminal domain IPJ91_01590 PF13361 UvrD-like helicase C-terminal domain IPJ91_01595 PF04101 Glycosyltransferase family 28 C-terminal domain IPJ91_01595 PF03033 Glycosyltransferase family 28 N-terminal domain IPJ91_01600 PF01098 Cell cycle protein IPJ91_01610 PF13456 Reverse transcriptase-like IPJ91_01610 PF00300 Histidine phosphatase superfamily (branch 1) IPJ91_01615 PF03144 Elongation factor Tu domain 2 IPJ91_01615 PF00009 Elongation factor Tu GTP binding domain IPJ91_01615 PF00679 Elongation factor G C-terminus IPJ91_01615 PF06421 GTP-binding protein LepA C-terminus IPJ91_01620 PF04452 RNA methyltransferase IPJ91_01625 PF03129 Anticodon binding domain IPJ91_01635 PF03816 Cell envelope-related transcriptional attenuator domain IPJ91_01640 PF13735 tRNA nucleotidyltransferase domain 2 putative IPJ91_01640 PF12627 Probable RNA and SrmB- binding site of polymerase A IPJ91_01640 PF01743 Poly A polymerase head domain IPJ91_01645 PF00664 ABC transporter transmembrane region IPJ91_01645 PF00005 ABC transporter IPJ91_01650 PF00579 tRNA synthetases class I (W and Y) IPJ91_01660 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IPJ91_01665 PF00953 Glycosyl transferase family 4 IPJ91_01680 PF01565 FAD binding domain IPJ91_01680 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IPJ91_01690 PF01180 Dihydroorotate dehydrogenase IPJ91_01710 PF00565 Staphylococcal nuclease homologue IPJ91_01720 PF00398 Ribosomal RNA adenine dimethylase IPJ91_01725 PF00012 Hsp70 protein IPJ91_01735 PF08471 Class II vitamin B12-dependent ribonucleotide reductase IPJ91_01735 PF02867 Ribonucleotide reductase, barrel domain IPJ91_01740 PF03477 ATP cone domain IPJ91_01755 PF01628 HrcA protein C terminal domain IPJ91_01765 PF01741 Large-conductance mechanosensitive channel, MscL IPJ91_01775 PF02824 TGS domain IPJ91_01775 PF03129 Anticodon binding domain IPJ91_01775 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IPJ91_01775 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IPJ91_01780 PF01368 DHH family IPJ91_01780 PF02272 DHHA1 domain IPJ91_01790 PF00005 ABC transporter IPJ91_01800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPJ91_01810 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPJ91_01815 PF10458 Valyl tRNA synthetase tRNA binding arm IPJ91_01815 PF00133 tRNA synthetases class I (I, L, M and V) IPJ91_01815 PF08264 Anticodon-binding domain of tRNA IPJ91_01875 PF00905 Penicillin binding protein transpeptidase domain IPJ91_01875 PF03717 Penicillin-binding Protein dimerisation domain IPJ91_01895 PF11967 Recombination protein O N terminal IPJ91_01895 PF02565 Recombination protein O C terminal IPJ91_01935 PF01336 OB-fold nucleic acid binding domain IPJ91_01935 PF00152 tRNA synthetases class II (D, K and N) IPJ91_01940 PF04055 Radical SAM superfamily IPJ91_01970 PF16200 C-terminal region of band_7 IPJ91_01970 PF01145 SPFH domain / Band 7 family IPJ91_01995 PF08245 Mur ligase middle domain IPJ91_01995 PF02875 Mur ligase family, glutamate ligase domain IPJ91_01995 PF01225 Mur ligase family, catalytic domain IPJ91_02000 PF00149 Calcineurin-like phosphoesterase IPJ91_02005 PF00588 SpoU rRNA Methylase family IPJ91_02005 PF08032 RNA 2'-O ribose methyltransferase substrate binding IPJ91_02010 PF03462 PCRF domain IPJ91_02010 PF00472 RF-1 domain IPJ91_02020 PF01709 Transcriptional regulator IPJ91_02025 PF01649 Ribosomal protein S20 IPJ91_02040 PF03652 Holliday junction resolvase IPJ91_02050 PF04851 Type III restriction enzyme, res subunit IPJ91_02050 PF12344 Ultra-violet resistance protein B IPJ91_02050 PF17757 UvrB interaction domain IPJ91_02050 PF00271 Helicase conserved C-terminal domain IPJ91_02050 PF02151 UvrB/uvrC motif IPJ91_02055 PF17961 Bacterial Ig domain IPJ91_02055 PF00746 LPXTG cell wall anchor motif IPJ91_02055 PF17210 SdrD B-like domain IPJ91_02055 PF04650 YSIRK type signal peptide IPJ91_02055 PF10425 C-terminus of bacterial fibrinogen-binding adhesin IPJ91_02060 PF03979 Sigma-70 factor, region 1.1 IPJ91_02060 PF04542 Sigma-70 region 2 IPJ91_02060 PF00140 Sigma-70 factor, region 1.2 IPJ91_02060 PF04539 Sigma-70 region 3 IPJ91_02060 PF04545 Sigma-70, region 4 IPJ91_02070 PF08264 Anticodon-binding domain of tRNA IPJ91_02070 PF00133 tRNA synthetases class I (I, L, M and V) IPJ91_02090 PF01746 tRNA (Guanine-1)-methyltransferase IPJ91_02100 PF01923 Cobalamin adenosyltransferase IPJ91_02105 PF01522 Polysaccharide deacetylase IPJ91_02110 PF01694 Rhomboid family IPJ91_02115 PF00156 Phosphoribosyl transferase domain IPJ91_02125 PF01168 Alanine racemase, N-terminal domain IPJ91_02125 PF00842 Alanine racemase, C-terminal domain IPJ91_02130 PF01820 D-ala D-ala ligase N-terminus IPJ91_02130 PF07478 D-ala D-ala ligase C-terminus IPJ91_02135 PF01368 DHH family IPJ91_02135 PF02272 DHHA1 domain IPJ91_02135 PF17768 RecJ OB domain IPJ91_02145 PF02463 RecF/RecN/SMC N terminal domain IPJ91_02150 PF01592 NifU-like N terminal domain IPJ91_02155 PF00118 TCP-1/cpn60 chaperonin family IPJ91_02160 PF00166 Chaperonin 10 Kd subunit IPJ91_02180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IPJ91_02190 PF00177 Ribosomal protein S7p/S5e IPJ91_02195 PF00164 Ribosomal protein S12/S23 IPJ91_02200 PF04997 RNA polymerase Rpb1, domain 1 IPJ91_02200 PF04998 RNA polymerase Rpb1, domain 5 IPJ91_02200 PF05000 RNA polymerase Rpb1, domain 4 IPJ91_02200 PF04983 RNA polymerase Rpb1, domain 3 IPJ91_02200 PF00623 RNA polymerase Rpb1, domain 2 IPJ91_02205 PF04560 RNA polymerase Rpb2, domain 7 IPJ91_02205 PF10385 RNA polymerase beta subunit external 1 domain IPJ91_02205 PF00562 RNA polymerase Rpb2, domain 6 IPJ91_02205 PF04565 RNA polymerase Rpb2, domain 3 IPJ91_02205 PF04563 RNA polymerase beta subunit IPJ91_02205 PF04561 RNA polymerase Rpb2, domain 2 IPJ91_02210 PF14693 Ribosomal protein TL5, C-terminal domain IPJ91_02210 PF01386 Ribosomal L25p family IPJ91_02215 PF02096 60Kd inner membrane protein IPJ91_02215 PF14849 YidC periplasmic domain IPJ91_02230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IPJ91_02245 PF04225 Opacity-associated protein A LysM-like domain IPJ91_02245 PF01551 Peptidase family M23 IPJ91_02255 PF02403 Seryl-tRNA synthetase N-terminal domain IPJ91_02255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IPJ91_02265 PF04055 Radical SAM superfamily IPJ91_02285 PF17479 Protein of unknown function (DUF3048) C-terminal domain IPJ91_02285 PF11258 Protein of unknown function (DUF3048) N-terminal domain IPJ91_02295 PF00155 Aminotransferase class I and II IPJ91_02305 PF05746 DALR anticodon binding domain IPJ91_02305 PF03485 Arginyl tRNA synthetase N terminal domain IPJ91_02305 PF00750 tRNA synthetases class I (R) IPJ91_02310 PF12072 Domain of unknown function (DUF3552) IPJ91_02310 PF01966 HD domain IPJ91_02310 PF00013 KH domain IPJ91_02325 PF12848 ABC transporter IPJ91_02325 PF00005 ABC transporter IPJ91_02335 PF00216 Bacterial DNA-binding protein IPJ91_02340 PF00578 AhpC/TSA family IPJ91_02365 PF00224 Pyruvate kinase, barrel domain IPJ91_02365 PF00391 PEP-utilising enzyme, mobile domain IPJ91_02365 PF02887 Pyruvate kinase, alpha/beta domain IPJ91_02370 PF00719 Inorganic pyrophosphatase IPJ91_02375 PF01434 Peptidase family M41 IPJ91_02375 PF06480 FtsH Extracellular IPJ91_02375 PF17862 AAA+ lid domain IPJ91_02375 PF00004 ATPase family associated with various cellular activities (AAA) IPJ91_02390 PF00583 Acetyltransferase (GNAT) family IPJ91_02390 PF13380 CoA binding domain IPJ91_02390 PF13607 Succinyl-CoA ligase like flavodoxin domain IPJ91_02405 PF00814 Glycoprotease family IPJ91_02420 PF02491 SHS2 domain inserted in FTSA IPJ91_02430 PF00004 ATPase family associated with various cellular activities (AAA) IPJ91_02430 PF02190 ATP-dependent protease La (LON) substrate-binding domain IPJ91_02430 PF05362 Lon protease (S16) C-terminal proteolytic domain IPJ91_02435 PF00933 Glycosyl hydrolase family 3 N terminal domain IPJ91_02450 PF00171 Aldehyde dehydrogenase family IPJ91_02465 PF01676 Metalloenzyme superfamily IPJ91_02465 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IPJ91_02470 PF17871 AAA lid domain IPJ91_02470 PF02861 Clp amino terminal domain, pathogenicity island component IPJ91_02470 PF10431 C-terminal, D2-small domain, of ClpB protein IPJ91_02470 PF07724 AAA domain (Cdc48 subfamily) IPJ91_02470 PF00004 ATPase family associated with various cellular activities (AAA) IPJ91_02480 PF01791 DeoC/LacD family aldolase IPJ91_02485 PF02686 Glu-tRNAGln amidotransferase C subunit IPJ91_02495 PF00175 Oxidoreductase NAD-binding domain IPJ91_02495 PF01383 CpcD/allophycocyanin linker domain IPJ91_02515 PF03449 Transcription elongation factor, N-terminal IPJ91_02515 PF01272 Transcription elongation factor, GreA/GreB, C-term IPJ91_02530 PF05496 Holliday junction DNA helicase RuvB P-loop domain IPJ91_02530 PF05491 RuvB C-terminal winged helix domain IPJ91_02530 PF17864 RuvB AAA lid domain IPJ91_02535 PF07499 RuvA, C-terminal domain IPJ91_02535 PF01330 RuvA N terminal domain IPJ91_02540 PF02075 Crossover junction endodeoxyribonuclease RuvC IPJ91_02565 PF18075 FtsX extracellular domain IPJ91_02565 PF02687 FtsX-like permease family IPJ91_02570 PF17757 UvrB interaction domain IPJ91_02570 PF04851 Type III restriction enzyme, res subunit IPJ91_02570 PF00271 Helicase conserved C-terminal domain IPJ91_02570 PF02151 UvrB/uvrC motif IPJ91_02570 PF12344 Ultra-violet resistance protein B IPJ91_02580 PF01509 TruB family pseudouridylate synthase (N terminal domain) IPJ91_02585 PF17961 Bacterial Ig domain IPJ91_02585 PF00746 LPXTG cell wall anchor motif IPJ91_02585 PF04650 YSIRK type signal peptide IPJ91_02585 PF17210 SdrD B-like domain IPJ91_02590 PF00633 Helix-hairpin-helix motif IPJ91_02590 PF00730 HhH-GPD superfamily base excision DNA repair protein IPJ91_02595 PF00380 Ribosomal protein S9/S16 IPJ91_02600 PF00572 Ribosomal protein L13 IPJ91_02605 PF01196 Ribosomal protein L17 IPJ91_02610 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IPJ91_02610 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IPJ91_02610 PF01000 RNA polymerase Rpb3/RpoA insert domain IPJ91_02615 PF01479 S4 domain IPJ91_02615 PF00163 Ribosomal protein S4/S9 N-terminal domain IPJ91_02620 PF00411 Ribosomal protein S11 IPJ91_02625 PF00416 Ribosomal protein S13/S18 IPJ91_02630 PF00444 Ribosomal protein L36 IPJ91_02635 PF01176 Translation initiation factor 1A / IF-1 IPJ91_02640 PF00557 Metallopeptidase family M24 IPJ91_02645 PF05191 Adenylate kinase, active site lid IPJ91_02650 PF00344 SecY translocase IPJ91_02655 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IPJ91_02660 PF00333 Ribosomal protein S5, N-terminal domain IPJ91_02660 PF03719 Ribosomal protein S5, C-terminal domain IPJ91_02665 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IPJ91_02670 PF00347 Ribosomal protein L6 IPJ91_02675 PF00410 Ribosomal protein S8 IPJ91_02680 PF00253 Ribosomal protein S14p/S29e IPJ91_02685 PF00281 Ribosomal protein L5 IPJ91_02685 PF00673 ribosomal L5P family C-terminus IPJ91_02690 PF00467 KOW motif IPJ91_02690 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IPJ91_02695 PF00238 Ribosomal protein L14p/L23e IPJ91_02700 PF00366 Ribosomal protein S17 IPJ91_02705 PF00252 Ribosomal protein L16p/L10e IPJ91_02710 PF00189 Ribosomal protein S3, C-terminal domain IPJ91_02710 PF07650 KH domain IPJ91_02715 PF00237 Ribosomal protein L22p/L17e IPJ91_02720 PF00203 Ribosomal protein S19 IPJ91_02725 PF00181 Ribosomal Proteins L2, RNA binding domain IPJ91_02725 PF03947 Ribosomal Proteins L2, C-terminal domain IPJ91_02730 PF00276 Ribosomal protein L23 IPJ91_02735 PF00573 Ribosomal protein L4/L1 family IPJ91_02745 PF00297 Ribosomal protein L3 IPJ91_02750 PF00338 Ribosomal protein S10p/S20e IPJ91_02755 PF00009 Elongation factor Tu GTP binding domain IPJ91_02755 PF03143 Elongation factor Tu C-terminal domain IPJ91_02755 PF03144 Elongation factor Tu domain 2 IPJ91_02760 PF03144 Elongation factor Tu domain 2 IPJ91_02760 PF00009 Elongation factor Tu GTP binding domain IPJ91_02760 PF03764 Elongation factor G, domain IV IPJ91_02760 PF14492 Elongation Factor G, domain II IPJ91_02760 PF00679 Elongation factor G C-terminus IPJ91_02770 PF01195 Peptidyl-tRNA hydrolase IPJ91_02775 PF01425 Amidase IPJ91_02790 PF00464 Serine hydroxymethyltransferase IPJ91_02800 PF00005 ABC transporter IPJ91_02805 PF17854 FtsK alpha domain IPJ91_02805 PF09397 Ftsk gamma domain IPJ91_02805 PF01580 FtsK/SpoIIIE family IPJ91_02810 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IPJ91_02810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IPJ91_02815 PF14524 Wzt C-terminal domain IPJ91_02815 PF00005 ABC transporter IPJ91_02840 PF01807 CHC2 zinc finger IPJ91_02840 PF10410 DnaB-helicase binding domain of primase IPJ91_02840 PF08275 DNA primase catalytic core, N-terminal domain IPJ91_02845 PF01668 SmpB protein IPJ91_02855 PF05697 Bacterial trigger factor protein (TF) IPJ91_02855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IPJ91_02855 PF05698 Bacterial trigger factor protein (TF) C-terminus IPJ91_02880 PF13439 Glycosyltransferase Family 4 IPJ91_02880 PF00534 Glycosyl transferases group 1 IPJ91_02890 PF01245 Ribosomal protein L19 IPJ91_02910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IPJ91_02910 PF03129 Anticodon binding domain IPJ91_02925 PF03167 Uracil DNA glycosylase superfamily IPJ91_02930 PF00825 Ribonuclease P IPJ91_02935 PF07516 SecA Wing and Scaffold domain IPJ91_02935 PF01043 SecA preprotein cross-linking domain IPJ91_02935 PF07517 SecA DEAD-like domain IPJ91_02935 PF02810 SEC-C motif IPJ91_02940 PF00005 ABC transporter IPJ91_02945 PF09335 SNARE associated Golgi protein IPJ91_02950 PF01411 tRNA synthetases class II (A) IPJ91_02950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IPJ91_02975 PF01588 Putative tRNA binding domain IPJ91_02975 PF00133 tRNA synthetases class I (I, L, M and V) IPJ91_02975 PF09334 tRNA synthetases class I (M) IPJ91_02985 PF01026 TatD related DNase IPJ91_02990 PF00293 NUDIX domain IPJ91_02995 PF08245 Mur ligase middle domain IPJ91_02995 PF01225 Mur ligase family, catalytic domain IPJ91_02995 PF02875 Mur ligase family, glutamate ligase domain IPJ91_03000 PF03129 Anticodon binding domain IPJ91_03000 PF13393 Histidyl-tRNA synthetase IPJ91_03005 PF01458 Uncharacterized protein family (UPF0051) IPJ91_03010 PF00266 Aminotransferase class-V IPJ91_03020 PF01098 Cell cycle protein IPJ91_03025 PF00113 Enolase, C-terminal TIM barrel domain IPJ91_03025 PF03952 Enolase, N-terminal domain IPJ91_03045 PF00684 DnaJ central domain IPJ91_03045 PF01556 DnaJ C terminal domain IPJ91_03045 PF00226 DnaJ domain IPJ91_03050 PF01933 Uncharacterised protein family UPF0052 IPJ91_03060 PF02223 Thymidylate kinase IPJ91_03080 PF02687 FtsX-like permease family IPJ91_03080 PF12704 MacB-like periplasmic core domain IPJ91_03080 PF00005 ABC transporter IPJ91_03090 PF02687 FtsX-like permease family IPJ91_03090 PF00005 ABC transporter IPJ91_03090 PF12704 MacB-like periplasmic core domain IPJ91_03115 PF02811 PHP domain IPJ91_03115 PF14579 Helix-hairpin-helix motif IPJ91_03115 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IPJ91_03115 PF07733 Bacterial DNA polymerase III alpha NTPase domain IPJ91_03120 PF00005 ABC transporter IPJ91_03130 PF00300 Histidine phosphatase superfamily (branch 1) IPJ91_03190 PF01367 5'-3' exonuclease, C-terminal SAM fold IPJ91_03190 PF00476 DNA polymerase family A IPJ91_03190 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IPJ91_03200 PF00154 recA bacterial DNA recombination protein IPJ91_03225 PF13439 Glycosyltransferase Family 4 IPJ91_03225 PF00534 Glycosyl transferases group 1 IPJ91_03230 PF16363 GDP-mannose 4,6 dehydratase IPJ91_03250 PF00535 Glycosyl transferase family 2 IPJ91_03265 PF00535 Glycosyl transferase family 2 IPJ91_03270 PF01406 tRNA synthetases class I (C) catalytic domain IPJ91_03275 PF02585 GlcNAc-PI de-N-acetylase IPJ91_03280 PF04760 Translation initiation factor IF-2, N-terminal region IPJ91_03280 PF00009 Elongation factor Tu GTP binding domain IPJ91_03280 PF11987 Translation-initiation factor 2 IPJ91_03295 PF08299 Bacterial dnaA protein helix-turn-helix IPJ91_03295 PF00308 Bacterial dnaA protein IPJ91_03295 PF11638 DnaA N-terminal domain IPJ91_03310 PF00436 Single-strand binding protein family IPJ91_03320 PF13335 Magnesium chelatase, subunit ChlI C-terminal IPJ91_03320 PF01078 Magnesium chelatase, subunit ChlI IPJ91_03325 PF00005 ABC transporter IPJ91_03330 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IPJ91_03345 PF01467 Cytidylyltransferase-like IPJ91_03345 PF00294 pfkB family carbohydrate kinase IPJ91_03365 PF00303 Thymidylate synthase IPJ91_03395 PF00534 Glycosyl transferases group 1 IPJ91_03395 PF13439 Glycosyltransferase Family 4 IPJ91_03410 PF00293 NUDIX domain IPJ91_03415 PF03372 Endonuclease/Exonuclease/phosphatase family IPJ91_03420 PF05970 PIF1-like helicase IPJ91_03425 PF02637 GatB domain IPJ91_03425 PF02934 GatB/GatE catalytic domain IPJ91_03440 PF01327 Polypeptide deformylase IPJ91_03445 PF00312 Ribosomal protein S15 IPJ91_03480 PF02768 DNA polymerase III beta subunit, C-terminal domain IPJ91_03480 PF02767 DNA polymerase III beta subunit, central domain IPJ91_03480 PF00712 DNA polymerase III beta subunit, N-terminal domain IPJ91_03505 PF02491 SHS2 domain inserted in FTSA IPJ91_03520 PF12327 FtsZ family, C-terminal domain IPJ91_03520 PF00091 Tubulin/FtsZ family, GTPase domain IPJ91_03530 PF00551 Formyl transferase IPJ91_03530 PF02911 Formyl transferase, C-terminal domain IPJ91_03535 PF02618 YceG-like family IPJ91_03545 PF04203 Sortase domain IPJ91_03555 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IPJ91_03555 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IPJ91_03565 PF04679 ATP dependent DNA ligase C terminal region IPJ91_03565 PF01068 ATP dependent DNA ligase domain IPJ91_03565 PF04675 DNA ligase N terminus IPJ91_03580 PF02824 TGS domain IPJ91_03580 PF04607 Region found in RelA / SpoT proteins IPJ91_03580 PF13291 ACT domain IPJ91_03585 PF00483 Nucleotidyl transferase IPJ91_03640 PF12848 ABC transporter IPJ91_03640 PF16326 ABC transporter C-terminal domain IPJ91_03640 PF00005 ABC transporter IPJ91_03645 PF01022 Bacterial regulatory protein, arsR family IPJ91_03650 PF00085 Thioredoxin IPJ91_03665 PF04488 Glycosyltransferase sugar-binding region containing DXD motif IPJ91_03670 PF13439 Glycosyltransferase Family 4 IPJ91_03670 PF00534 Glycosyl transferases group 1 IPJ91_03675 PF08323 Starch synthase catalytic domain IPJ91_03675 PF00534 Glycosyl transferases group 1 IPJ91_03680 PF00308 Bacterial dnaA protein IPJ91_03680 PF08299 Bacterial dnaA protein helix-turn-helix IPJ91_03680 PF11638 DnaA N-terminal domain IPJ91_03685 PF00575 S1 RNA binding domain IPJ91_03700 PF07497 Rho termination factor, RNA-binding domain IPJ91_03700 PF07498 Rho termination factor, N-terminal domain IPJ91_03700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IPJ91_03705 PF01551 Peptidase family M23 IPJ91_03705 PF10145 Phage-related minor tail protein IPJ91_03705 PF01464 Transglycosylase SLT domain IPJ91_03740 PF01569 PAP2 superfamily IPJ91_03760 PF00334 Nucleoside diphosphate kinase IPJ91_03770 PF01593 Flavin containing amine oxidoreductase IPJ91_03775 PF00535 Glycosyl transferase family 2 IPJ91_03800 PF00542 Ribosomal protein L7/L12 C-terminal domain IPJ91_03800 PF16320 Ribosomal protein L7/L12 dimerisation domain