locus-tag	class	description
IPJ91_00025	COG0081	regulation of translation
IPJ91_00030	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
IPJ91_00035	COG0250	Participates in transcription elongation, termination and antitermination
IPJ91_00050	COG0267	Belongs to the bacterial ribosomal protein bL33 family
IPJ91_00100	COG0504	CTP synthase activity
IPJ91_00145	COG1077	Cell shape determining protein MreB Mrl
IPJ91_00150	COG0768	penicillin binding
IPJ91_00155	COG0758	DNA mediated transformation
IPJ91_00155	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
IPJ91_00160	COG0052	Belongs to the universal ribosomal protein uS2 family
IPJ91_00165	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
IPJ91_00170	COG0233	cytoplasmic translational termination
IPJ91_00185	COG0750	zinc metalloprotease
IPJ91_00220	COG2843	Capsule synthesis protein
IPJ91_00235	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
IPJ91_00245	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
IPJ91_00255	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
IPJ91_00300	COG0322	excinuclease ABC activity
IPJ91_00315	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
IPJ91_00410	COG0415	Belongs to the DNA photolyase family
IPJ91_00520	COG1794	racemase activity, acting on amino acids and derivatives
IPJ91_00535	COG1215	transferase activity, transferring glycosyl groups
IPJ91_00565	COG0254	rRNA binding
IPJ91_00570	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
IPJ91_00610	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
IPJ91_00635	COG2890	protein-(glutamine-N5) methyltransferase activity
IPJ91_00640	COG0305	Participates in initiation and elongation during chromosome replication
IPJ91_00645	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
IPJ91_00655	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
IPJ91_00680	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
IPJ91_00720	COG4974	Belongs to the 'phage' integrase family
IPJ91_00730	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
IPJ91_00735	COG3409	Peptidoglycan-binding domain 1 protein
IPJ91_00735	COG0793	Belongs to the peptidase S41A family
IPJ91_00745	COG2267	carboxylic ester hydrolase activity
IPJ91_00750	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
IPJ91_00760	COG0360	Binds together with S18 to 16S ribosomal RNA
IPJ91_00765	COG0012	GTP binding
IPJ91_00775	COG0662	Cupin 2, conserved barrel domain protein
IPJ91_00795	COG2949	membrane
IPJ91_00810	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
IPJ91_00835	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
IPJ91_00840	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
IPJ91_00900	COG0333	Belongs to the bacterial ribosomal protein bL32 family
IPJ91_00905	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
IPJ91_00910	COG0571	ribonuclease III activity
IPJ91_00920	COG0792	nuclease activity
IPJ91_00930	COG4221	oxidoreductase activity
IPJ91_00935	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
IPJ91_00940	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
IPJ91_00960	COG1704	LemA family
IPJ91_00975	COG1185	polyribonucleotide nucleotidyltransferase activity
IPJ91_00980	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
IPJ91_00990	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
IPJ91_01005	COG0742	ribosomal rna small subunit methyltransferase
IPJ91_01025	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
IPJ91_01045	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
IPJ91_01060	COG1136	(ABC) transporter
IPJ91_01070	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
IPJ91_01095	COG0542	response to heat
IPJ91_01100	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
IPJ91_01100	COG0072	phenylalanine-tRNA ligase activity
IPJ91_01125	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
IPJ91_01130	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
IPJ91_01160	COG0343	queuine tRNA-ribosyltransferase activity
IPJ91_01165	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
IPJ91_01175	COG0495	leucyl-tRNA aminoacylation
IPJ91_01220	COG4974	Belongs to the 'phage' integrase family
IPJ91_01275	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
IPJ91_01280	COG0740	serine-type endopeptidase activity
IPJ91_01290	COG0745	RESPONSE REGULATOR receiver
IPJ91_01325	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
IPJ91_01350	COG2001	Belongs to the MraZ family
IPJ91_01365	COG0017	Asparaginyl-tRNA synthetase
IPJ91_01395	COG3958	Transketolase
IPJ91_01400	COG3959	Transketolase, thiamine diphosphate binding domain
IPJ91_01415	COG0698	ribose 5-phosphate isomerase
IPJ91_01435	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
IPJ91_01445	COG1475	DNA binding
IPJ91_01455	COG2816	NAD+ diphosphatase activity
IPJ91_01495	COG0628	permease
IPJ91_01520	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
IPJ91_01535	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
IPJ91_01545	COG0492	ferredoxin-NADP+ reductase activity
IPJ91_01565	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
IPJ91_01575	COG0433	COG0433 Predicted ATPase
IPJ91_01590	COG0210	DNA helicase
IPJ91_01595	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
IPJ91_01600	COG0772	Belongs to the SEDS family
IPJ91_01615	COG0481	GTPase activity
IPJ91_01625	COG0423	glycine-tRNA ligase activity
IPJ91_01635	COG1316	TRANSCRIPTIONal
IPJ91_01645	COG5265	(ABC) transporter
IPJ91_01650	COG0180	Tryptophanyl-tRNA synthetase
IPJ91_01660	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
IPJ91_01665	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
IPJ91_01690	COG0167	dihydroorotate dehydrogenase activity
IPJ91_01700	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
IPJ91_01710	COG1525	nuclease
IPJ91_01720	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
IPJ91_01725	COG0443	Heat shock 70 kDa protein
IPJ91_01740	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
IPJ91_01755	COG1420	regulation of RNA biosynthetic process
IPJ91_01765	COG1970	mechanosensitive ion channel activity
IPJ91_01775	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
IPJ91_01780	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
IPJ91_01790	COG1131	(ABC) transporter
IPJ91_01800	COG0642	Histidine kinase
IPJ91_01810	COG0724	RNA recognition motif
IPJ91_01875	COG0768	penicillin binding
IPJ91_01895	COG1381	Involved in DNA repair and RecF pathway recombination
IPJ91_01935	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
IPJ91_01940	COG0820	rRNA (adenine-C2-)-methyltransferase activity
IPJ91_01970	COG0330	HflC and HflK could
IPJ91_01995	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
IPJ91_02000	COG1408	metallophosphoesterase
IPJ91_02010	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
IPJ91_02020	COG0217	transcriptional regulatory protein
IPJ91_02025	COG0268	Binds directly to 16S ribosomal RNA
IPJ91_02040	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
IPJ91_02050	COG0556	nucleotide-excision repair
IPJ91_02060	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
IPJ91_02070	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
IPJ91_02090	COG0336	Belongs to the RNA methyltransferase TrmD family
IPJ91_02100	COG2096	Adenosyltransferase
IPJ91_02105	COG0726	polysaccharide deacetylase
IPJ91_02110	COG0705	Rhomboid family
IPJ91_02110	COG0457	Tetratricopeptide repeat
IPJ91_02115	COG1040	competence protein
IPJ91_02125	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
IPJ91_02135	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
IPJ91_02145	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
IPJ91_02150	COG0822	iron-sulfur transferase activity
IPJ91_02155	COG0459	protein refolding
IPJ91_02160	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
IPJ91_02170	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
IPJ91_02180	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
IPJ91_02190	COG0049	tRNA binding
IPJ91_02195	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
IPJ91_02200	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
IPJ91_02205	COG0085	RNA polymerase activity
IPJ91_02210	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
IPJ91_02215	COG0706	membrane insertase activity
IPJ91_02230	COG0747	negative chemotaxis
IPJ91_02245	COG0739	heme binding
IPJ91_02255	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
IPJ91_02285	COG1470	cell adhesion involved in biofilm formation
IPJ91_02305	COG0018	arginyl-trna synthetase
IPJ91_02310	COG1418	mRNA catabolic process
IPJ91_02325	COG0488	(ABC) transporter
IPJ91_02340	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
IPJ91_02370	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
IPJ91_02375	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
IPJ91_02390	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
IPJ91_02390	COG1042	CoA-binding domain protein
IPJ91_02390	COG0045	succinate-CoA ligase (ADP-forming) activity
IPJ91_02405	COG1214	PFAM Peptidase M22, glycoprotease
IPJ91_02435	COG1472	Belongs to the glycosyl hydrolase 3 family
IPJ91_02450	COG1012	belongs to the aldehyde dehydrogenase family
IPJ91_02465	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
IPJ91_02470	COG0542	response to heat
IPJ91_02475	COG1028	Short-chain dehydrogenase reductase Sdr
IPJ91_02480	COG1830	Aldolase
IPJ91_02485	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
IPJ91_02515	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
IPJ91_02530	COG2255	four-way junction helicase activity
IPJ91_02535	COG0632	four-way junction helicase activity
IPJ91_02540	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
IPJ91_02565	COG2177	Part of the ABC transporter FtsEX involved in
IPJ91_02580	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
IPJ91_02590	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
IPJ91_02595	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
IPJ91_02600	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
IPJ91_02605	COG0203	ribosomal protein L17
IPJ91_02610	COG0202	RNA polymerase activity
IPJ91_02615	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
IPJ91_02620	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
IPJ91_02630	COG0257	Belongs to the bacterial ribosomal protein bL36 family
IPJ91_02635	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
IPJ91_02640	COG0024	Methionine aminopeptidase
IPJ91_02645	COG0563	adenylate kinase activity
IPJ91_02650	COG0201	protein transport
IPJ91_02655	COG0200	Binds to the 23S rRNA
IPJ91_02660	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
IPJ91_02665	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
IPJ91_02670	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
IPJ91_02675	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
IPJ91_02680	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
IPJ91_02685	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
IPJ91_02690	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
IPJ91_02695	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
IPJ91_02705	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
IPJ91_02710	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
IPJ91_02720	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
IPJ91_02725	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
IPJ91_02735	COG0088	Forms part of the polypeptide exit tunnel
IPJ91_02750	COG0051	transcription antitermination factor activity, RNA binding
IPJ91_02755	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
IPJ91_02760	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
IPJ91_02770	COG0193	aminoacyl-tRNA hydrolase activity
IPJ91_02775	COG0154	amidase activity
IPJ91_02790	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
IPJ91_02800	COG2884	Cell division ATP-binding protein ftsE
IPJ91_02805	COG1674	ftsk spoiiie
IPJ91_02810	COG0545	Peptidyl-prolyl cis-trans isomerase
IPJ91_02840	COG0358	DNA primase activity
IPJ91_02845	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
IPJ91_02855	COG0544	peptidyl-prolyl cis-trans isomerase activity
IPJ91_02880	COG0297	glycogen (starch) synthase activity
IPJ91_02890	COG0335	large ribosomal subunit rRNA binding
IPJ91_02925	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
IPJ91_02930	COG0594	ribonuclease P activity
IPJ91_02935	COG0653	protein targeting
IPJ91_02945	COG0586	Pfam SNARE associated Golgi protein
IPJ91_02950	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
IPJ91_02975	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
IPJ91_02975	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
IPJ91_02985	COG0084	hydrolase, TatD family'
IPJ91_02990	COG0494	nUDIX hydrolase
IPJ91_02995	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
IPJ91_03005	COG0719	Fe-S assembly protein
IPJ91_03010	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
IPJ91_03025	COG0148	phosphopyruvate hydratase activity
IPJ91_03045	COG0484	heat shock protein binding
IPJ91_03050	COG0391	Required for morphogenesis under gluconeogenic growth conditions
IPJ91_03060	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
IPJ91_03080	COG1136	(ABC) transporter
IPJ91_03080	COG0577	efflux transmembrane transporter activity
IPJ91_03090	COG1136	(ABC) transporter
IPJ91_03090	COG0577	efflux transmembrane transporter activity
IPJ91_03120	COG1131	(ABC) transporter
IPJ91_03130	COG0588	phosphoglycerate mutase activity
IPJ91_03190	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
IPJ91_03190	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
IPJ91_03200	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
IPJ91_03230	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
IPJ91_03250	COG0463	Glycosyl transferase, family 2
IPJ91_03270	COG0215	cysteine-tRNA ligase activity
IPJ91_03275	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
IPJ91_03295	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
IPJ91_03310	COG0629	single-stranded DNA binding
IPJ91_03320	COG0606	chelatase, subunit chli
IPJ91_03325	COG0396	ATPase activity
IPJ91_03330	COG0802	atpase or kinase
IPJ91_03410	COG1051	belongs to the nudix hydrolase family
IPJ91_03415	COG0708	Exodeoxyribonuclease III
IPJ91_03420	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
IPJ91_03425	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
IPJ91_03440	COG0242	peptide deformylase activity
IPJ91_03445	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
IPJ91_03520	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
IPJ91_03530	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
IPJ91_03535	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
IPJ91_03545	COG3764	Sortase (surface protein transpeptidase)
IPJ91_03565	COG1793	dna ligase
IPJ91_03580	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
IPJ91_03585	COG1210	Utp--glucose-1-phosphate uridylyltransferase
IPJ91_03640	COG0488	(ABC) transporter
IPJ91_03650	COG3118	belongs to the thioredoxin family
IPJ91_03665	COG3774	pathogenesis
IPJ91_03670	COG0438	transferase activity, transferring glycosyl groups
IPJ91_03675	COG0297	glycogen (starch) synthase activity
IPJ91_03680	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
IPJ91_03685	COG0539	negative regulation of cytoplasmic translation
IPJ91_03700	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
IPJ91_03705	COG0741	lytic transglycosylase activity
IPJ91_03705	COG0739	heme binding
IPJ91_03705	COG1196	nuclear chromosome segregation
IPJ91_03740	COG0671	phosphoesterase, PA-phosphatase related
IPJ91_03790	COG1077	Cell shape determining protein MreB Mrl
IPJ91_03800	COG0222	ribosome binding