locus-tag class description US01_C0001G0003 PF07963 Prokaryotic N-terminal methylation motif US01_C0001G0003 PF14245 Type IV pilin PilA US01_C0001G0004 PF07963 Prokaryotic N-terminal methylation motif US01_C0001G0004 PF08334 Type II secretion system (T2SS), protein G US01_C0001G0007 PF01926 50S ribosome-binding GTPase US01_C0001G0007 PF01018 GTP1/OBG US01_C0001G0008 PF01551 Peptidase family M23 US01_C0001G0008 PF10145 Phage-related minor tail protein US01_C0001G0008 PF01464 Transglycosylase SLT domain US01_C0001G0009 PF07498 Rho termination factor, N-terminal domain US01_C0001G0009 PF07497 Rho termination factor, RNA-binding domain US01_C0001G0009 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain US01_C0001G0012 PF18073 Rubredoxin metal binding domain US01_C0001G0014 PF00294 pfkB family carbohydrate kinase US01_C0001G0014 PF01467 Cytidylyltransferase-like US01_C0001G0015 PF01933 Uncharacterised protein family UPF0052 US01_C0001G0017 PF04294 VanW like protein US01_C0001G0018 PF08486 Stage II sporulation protein US01_C0001G0031 PF11638 DnaA N-terminal domain US01_C0001G0031 PF08299 Bacterial dnaA protein helix-turn-helix US01_C0001G0031 PF00308 Bacterial dnaA protein US01_C0001G0032 PF02767 DNA polymerase III beta subunit, central domain US01_C0001G0032 PF00712 DNA polymerase III beta subunit, N-terminal domain US01_C0001G0032 PF02768 DNA polymerase III beta subunit, C-terminal domain US01_C0001G0033 PF00468 Ribosomal protein L34 US01_C0001G0036 PF02096 60Kd inner membrane protein US01_C0001G0038 PF00300 Histidine phosphatase superfamily (branch 1) US01_C0001G0038 PF13456 Reverse transcriptase-like US01_C0001G0040 PF01386 Ribosomal L25p family US01_C0001G0040 PF14693 Ribosomal protein TL5, C-terminal domain US01_C0001G0042 PF10458 Valyl tRNA synthetase tRNA binding arm US01_C0001G0042 PF00133 tRNA synthetases class I (I, L, M and V) US01_C0001G0042 PF08264 Anticodon-binding domain of tRNA US01_C0001G0044 PF01255 Putative undecaprenyl diphosphate synthase US01_C0001G0055 PF02463 RecF/RecN/SMC N terminal domain US01_C0001G0056 PF01256 Carbohydrate kinase US01_C0001G0056 PF03853 YjeF-related protein N-terminus US01_C0001G0058 PF04679 ATP dependent DNA ligase C terminal region US01_C0001G0058 PF01068 ATP dependent DNA ligase domain US01_C0001G0058 PF04675 DNA ligase N terminus US01_C0001G0059 PF04101 Glycosyltransferase family 28 C-terminal domain US01_C0001G0059 PF03033 Glycosyltransferase family 28 N-terminal domain US01_C0001G0060 PF01195 Peptidyl-tRNA hydrolase US01_C0001G0062 PF00348 Polyprenyl synthetase US01_C0001G0069 PF08544 GHMP kinases C terminal US01_C0001G0069 PF00288 GHMP kinases N terminal domain US01_C0001G0075 PF01061 ABC-2 type transporter US01_C0001G0076 PF00005 ABC transporter US01_C0001G0084 PF00535 Glycosyl transferase family 2 US01_C0001G0086 PF00535 Glycosyl transferase family 2 US01_C0001G0087 PF16363 GDP-mannose 4,6 dehydratase US01_C0001G0088 PF03808 Glycosyl transferase WecB/TagA/CpsF family US01_C0001G0091 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family US01_C0001G0093 PF00162 Phosphoglycerate kinase US01_C0001G0094 PF00575 S1 RNA binding domain US01_C0001G0095 PF02397 Bacterial sugar transferase US01_C0001G0099 PF00933 Glycosyl hydrolase family 3 N terminal domain US01_C0001G0107 PF02543 Carbamoyltransferase N-terminus US01_C0001G0107 PF16861 Carbamoyltransferase C-terminus US01_C0001G0114 PF03144 Elongation factor Tu domain 2 US01_C0001G0114 PF00009 Elongation factor Tu GTP binding domain US01_C0001G0114 PF06421 GTP-binding protein LepA C-terminus US01_C0001G0114 PF00679 Elongation factor G C-terminus US01_C0001G0115 PF01649 Ribosomal protein S20 US01_C0001G0116 PF03023 Lipid II flippase MurJ US01_C0001G0121 PF00704 Glycosyl hydrolases family 18 US01_C0001G0121 PF01476 LysM domain US01_C0001G0122 PF00912 Transglycosylase US01_C0001G0122 PF00905 Penicillin binding protein transpeptidase domain US01_C0001G0122 PF17092 Penicillin-binding protein OB-like domain US01_C0001G0127 PF03477 ATP cone domain US01_C0001G0129 PF00905 Penicillin binding protein transpeptidase domain US01_C0001G0129 PF00912 Transglycosylase US01_C0001G0131 PF02224 Cytidylate kinase US01_C0001G0133 PF01668 SmpB protein US01_C0001G0135 PF00814 Glycoprotease family US01_C0001G0136 PF01300 Telomere recombination US01_C0001G0136 PF03481 Putative GTP-binding controlling metal-binding US01_C0001G0138 PF00166 Chaperonin 10 Kd subunit US01_C0001G0139 PF00118 TCP-1/cpn60 chaperonin family US01_C0001G0144 PF02899 Phage integrase, N-terminal SAM-like domain US01_C0001G0144 PF00589 Phage integrase family US01_C0001G0145 PF01820 D-ala D-ala ligase N-terminus US01_C0001G0145 PF07478 D-ala D-ala ligase C-terminus US01_C0001G0146 PF08264 Anticodon-binding domain of tRNA US01_C0001G0146 PF09334 tRNA synthetases class I (M) US01_C0001G0146 PF01588 Putative tRNA binding domain US01_C0001G0147 PF00004 ATPase family associated with various cellular activities (AAA) US01_C0001G0147 PF17862 AAA+ lid domain US01_C0001G0147 PF01434 Peptidase family M41 US01_C0001G0147 PF06480 FtsH Extracellular US01_C0001G0148 PF07885 Ion channel US01_C0001G0149 PF00476 DNA polymerase family A US01_C0001G0149 PF01367 5'-3' exonuclease, C-terminal SAM fold US01_C0001G0149 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain US01_C0001G0150 PF08323 Starch synthase catalytic domain US01_C0001G0150 PF00534 Glycosyl transferases group 1 US01_C0001G0152 PF00119 ATP synthase A chain US01_C0001G0153 PF00137 ATP synthase subunit C US01_C0001G0154 PF00430 ATP synthase B/B' CF(0) US01_C0001G0155 PF00213 ATP synthase delta (OSCP) subunit US01_C0001G0156 PF02874 ATP synthase alpha/beta family, beta-barrel domain US01_C0001G0156 PF00306 ATP synthase alpha/beta chain, C terminal domain US01_C0001G0156 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain US01_C0001G0157 PF00231 ATP synthase US01_C0001G0158 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain US01_C0001G0158 PF02874 ATP synthase alpha/beta family, beta-barrel domain US01_C0001G0159 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain US01_C0001G0162 PF00012 Hsp70 protein US01_C0001G0163 PF00684 DnaJ central domain US01_C0001G0163 PF01556 DnaJ C terminal domain US01_C0001G0163 PF00226 DnaJ domain US01_C0001G0164 PF13184 NusA-like KH domain US01_C0001G0164 PF08529 NusA N-terminal domain US01_C0001G0164 PF00575 S1 RNA binding domain US01_C0001G0165 PF11987 Translation-initiation factor 2 US01_C0001G0165 PF04760 Translation initiation factor IF-2, N-terminal region US01_C0001G0165 PF03144 Elongation factor Tu domain 2 US01_C0001G0165 PF00009 Elongation factor Tu GTP binding domain US01_C0001G0166 PF00312 Ribosomal protein S15 US01_C0001G0168 PF03725 3' exoribonuclease family, domain 2 US01_C0001G0168 PF01138 3' exoribonuclease family, domain 1 US01_C0001G0168 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain US01_C0001G0168 PF00013 KH domain US01_C0001G0168 PF00575 S1 RNA binding domain US01_C0001G0170 PF00483 Nucleotidyl transferase US01_C0001G0171 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain US01_C0001G0171 PF02777 Iron/manganese superoxide dismutases, C-terminal domain US01_C0001G0173 PF00293 NUDIX domain US01_C0001G0175 PF01931 Protein of unknown function DUF84 US01_C0001G0178 PF02502 Ribose/Galactose Isomerase US01_C0001G0179 PF00834 Ribulose-phosphate 3 epimerase family US01_C0001G0181 PF00294 pfkB family carbohydrate kinase US01_C0001G0183 PF02190 ATP-dependent protease La (LON) substrate-binding domain US01_C0001G0183 PF05362 Lon protease (S16) C-terminal proteolytic domain US01_C0001G0183 PF00004 ATPase family associated with various cellular activities (AAA) US01_C0001G0184 PF03167 Uracil DNA glycosylase superfamily US01_C0001G0185 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain US01_C0001G0185 PF17770 Ribonuclease J C-terminal domain US01_C0001G0185 PF00753 Metallo-beta-lactamase superfamily US01_C0001G0186 PF01580 FtsK/SpoIIIE family US01_C0001G0186 PF09397 Ftsk gamma domain US01_C0001G0186 PF17854 FtsK alpha domain US01_C0001G0187 PF00156 Phosphoribosyl transferase domain US01_C0001G0191 PF13464 Domain of unknown function (DUF4115) US01_C0001G0194 PF01411 tRNA synthetases class II (A) US01_C0001G0194 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain US01_C0001G0197 PF03652 Holliday junction resolvase US01_C0001G0198 PF02618 YceG-like family US01_C0001G0199 PF04565 RNA polymerase Rpb2, domain 3 US01_C0001G0199 PF04563 RNA polymerase beta subunit US01_C0001G0199 PF00562 RNA polymerase Rpb2, domain 6 US01_C0001G0199 PF04560 RNA polymerase Rpb2, domain 7 US01_C0001G0199 PF04561 RNA polymerase Rpb2, domain 2 US01_C0001G0199 PF10385 RNA polymerase beta subunit external 1 domain US01_C0001G0200 PF04983 RNA polymerase Rpb1, domain 3 US01_C0001G0200 PF05000 RNA polymerase Rpb1, domain 4 US01_C0001G0200 PF00623 RNA polymerase Rpb1, domain 2 US01_C0001G0200 PF04997 RNA polymerase Rpb1, domain 1 US01_C0001G0200 PF04998 RNA polymerase Rpb1, domain 5 US01_C0001G0201 PF00164 Ribosomal protein S12/S23 US01_C0001G0202 PF00177 Ribosomal protein S7p/S5e US01_C0001G0203 PF00679 Elongation factor G C-terminus US01_C0001G0203 PF14492 Elongation Factor G, domain II US01_C0001G0203 PF03764 Elongation factor G, domain IV US01_C0001G0203 PF00009 Elongation factor Tu GTP binding domain US01_C0001G0203 PF03144 Elongation factor Tu domain 2 US01_C0001G0204 PF00009 Elongation factor Tu GTP binding domain US01_C0001G0204 PF03144 Elongation factor Tu domain 2 US01_C0001G0204 PF03143 Elongation factor Tu C-terminal domain US01_C0001G0205 PF00338 Ribosomal protein S10p/S20e US01_C0001G0206 PF00297 Ribosomal protein L3 US01_C0001G0207 PF00573 Ribosomal protein L4/L1 family US01_C0001G0208 PF00276 Ribosomal protein L23 US01_C0001G0209 PF03947 Ribosomal Proteins L2, C-terminal domain US01_C0001G0209 PF00181 Ribosomal Proteins L2, RNA binding domain US01_C0001G0210 PF00203 Ribosomal protein S19 US01_C0001G0211 PF00237 Ribosomal protein L22p/L17e US01_C0001G0212 PF07650 KH domain US01_C0001G0212 PF00189 Ribosomal protein S3, C-terminal domain US01_C0001G0214 PF00831 Ribosomal L29 protein US01_C0001G0215 PF00366 Ribosomal protein S17 US01_C0001G0216 PF00238 Ribosomal protein L14p/L23e US01_C0001G0217 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 US01_C0001G0218 PF00673 ribosomal L5P family C-terminus US01_C0001G0218 PF00281 Ribosomal protein L5 US01_C0001G0219 PF00253 Ribosomal protein S14p/S29e US01_C0001G0220 PF00410 Ribosomal protein S8 US01_C0001G0221 PF00347 Ribosomal protein L6 US01_C0001G0222 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast US01_C0001G0223 PF00333 Ribosomal protein S5, N-terminal domain US01_C0001G0223 PF03719 Ribosomal protein S5, C-terminal domain US01_C0001G0224 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A US01_C0001G0225 PF00344 SecY translocase US01_C0001G0226 PF05191 Adenylate kinase, active site lid US01_C0001G0227 PF01176 Translation initiation factor 1A / IF-1 US01_C0001G0228 PF00416 Ribosomal protein S13/S18 US01_C0001G0229 PF00411 Ribosomal protein S11 US01_C0001G0230 PF00163 Ribosomal protein S4/S9 N-terminal domain US01_C0001G0230 PF01479 S4 domain US01_C0001G0231 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain US01_C0001G0231 PF01000 RNA polymerase Rpb3/RpoA insert domain US01_C0001G0231 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain US01_C0001G0232 PF01196 Ribosomal protein L17 US01_C0001G0233 PF00572 Ribosomal protein L13 US01_C0001G0234 PF00380 Ribosomal protein S9/S16 US01_C0001G0235 PF00216 Bacterial DNA-binding protein US01_C0001G0238 PF00173 Cytochrome b5-like Heme/Steroid binding domain US01_C0001G0239 PF01022 Bacterial regulatory protein, arsR family US01_C0001G0240 PF00005 ABC transporter US01_C0001G0241 PF01458 Uncharacterized protein family (UPF0051) US01_C0001G0242 PF01458 Uncharacterized protein family (UPF0051) US01_C0001G0243 PF00266 Aminotransferase class-V US01_C0001G0244 PF01592 NifU-like N terminal domain US01_C0001G0247 PF00571 CBS domain US01_C0001G0247 PF00478 IMP dehydrogenase / GMP reductase domain US01_C0001G0250 PF13426 PAS domain US01_C0001G0250 PF00990 Diguanylate cyclase, GGDEF domain US01_C0001G0250 PF00563 EAL domain US01_C0001G0251 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) US01_C0001G0252 PF02525 Flavodoxin-like fold US01_C0001G0253 PF00438 S-adenosylmethionine synthetase, N-terminal domain US01_C0001G0253 PF02772 S-adenosylmethionine synthetase, central domain US01_C0001G0253 PF02773 S-adenosylmethionine synthetase, C-terminal domain US01_C0001G0255 PF09297 NADH pyrophosphatase zinc ribbon domain US01_C0001G0255 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain US01_C0001G0255 PF00293 NUDIX domain US01_C0001G0259 PF00248 Aldo/keto reductase family US01_C0001G0260 PF01541 GIY-YIG catalytic domain US01_C0001G0265 PF13419 Haloacid dehalogenase-like hydrolase US01_C0001G0272 PF18075 FtsX extracellular domain US01_C0001G0272 PF02687 FtsX-like permease family US01_C0001G0273 PF00005 ABC transporter US01_C0001G0280 PF13186 Iron-sulfur cluster-binding domain US01_C0001G0280 PF04055 Radical SAM superfamily US01_C0001G0281 PF02673 Bacitracin resistance protein BacA US01_C0001G0285 PF04262 Glutamate-cysteine ligase US01_C0001G0285 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain US01_C0001G0285 PF18419 ATP-grasp-like domain US01_C0001G0289 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit US01_C0001G0289 PF10531 SLBB domain US01_C0001G0289 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region US01_C0001G0290 PF12838 4Fe-4S dicluster domain US01_C0001G0290 PF02256 Iron hydrogenase small subunit US01_C0001G0290 PF02906 Iron only hydrogenase large subunit, C-terminal domain US01_C0001G0292 PF00005 ABC transporter US01_C0001G0292 PF02687 FtsX-like permease family US01_C0001G0292 PF12704 MacB-like periplasmic core domain US01_C0001G0293 PF02687 FtsX-like permease family US01_C0001G0293 PF12704 MacB-like periplasmic core domain US01_C0001G0296 PF00154 recA bacterial DNA recombination protein US01_C0001G0297 PF00013 KH domain US01_C0001G0297 PF12072 Domain of unknown function (DUF3552) US01_C0001G0297 PF01966 HD domain US01_C0001G0299 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle US01_C0001G0301 PF01207 Dihydrouridine synthase (Dus) US01_C0001G0302 PF00580 UvrD/REP helicase N-terminal domain US01_C0001G0302 PF13361 UvrD-like helicase C-terminal domain US01_C0001G0303 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase US01_C0001G0305 PF00557 Metallopeptidase family M24 US01_C0001G0306 PF00140 Sigma-70 factor, region 1.2 US01_C0001G0306 PF04545 Sigma-70, region 4 US01_C0001G0306 PF04539 Sigma-70 region 3 US01_C0001G0306 PF04542 Sigma-70 region 2 US01_C0001G0306 PF03979 Sigma-70 factor, region 1.1 US01_C0001G0330 PF16326 ABC transporter C-terminal domain US01_C0001G0330 PF00005 ABC transporter US01_C0001G0330 PF12848 ABC transporter US01_C0001G0336 PF04226 Transglycosylase associated protein US01_C0001G0340 PF13344 Haloacid dehalogenase-like hydrolase US01_C0001G0340 PF00293 NUDIX domain US01_C0001G0343 PF01381 Helix-turn-helix US01_C0001G0347 PF00270 DEAD/DEAH box helicase US01_C0001G0347 PF00271 Helicase conserved C-terminal domain US01_C0001G0348 PF00491 Arginase family US01_C0001G0353 PF01638 HxlR-like helix-turn-helix US01_C0001G0360 PF00005 ABC transporter US01_C0001G0361 PF12704 MacB-like periplasmic core domain US01_C0001G0361 PF00005 ABC transporter US01_C0001G0361 PF02687 FtsX-like permease family US01_C0001G0363 PF00072 Response regulator receiver domain US01_C0001G0363 PF00486 Transcriptional regulatory protein, C terminal US01_C0001G0364 PF00989 PAS fold US01_C0001G0364 PF00672 HAMP domain US01_C0001G0364 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase US01_C0001G0364 PF18698 Histidine kinase sensor domain US01_C0001G0364 PF00512 His Kinase A (phospho-acceptor) domain US01_C0001G0365 PF02547 Queuosine biosynthesis protein US01_C0001G0366 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain US01_C0001G0366 PF13538 UvrD-like helicase C-terminal domain US01_C0001G0366 PF14490 Helix-hairpin-helix containing domain US01_C0001G0367 PF01479 S4 domain US01_C0001G0367 PF00849 RNA pseudouridylate synthase US01_C0001G0368 PF13419 Haloacid dehalogenase-like hydrolase US01_C0001G0370 PF12002 MgsA AAA+ ATPase C terminal US01_C0001G0370 PF00004 ATPase family associated with various cellular activities (AAA) US01_C0001G0370 PF16193 AAA C-terminal domain US01_C0001G0374 PF00534 Glycosyl transferases group 1 US01_C0001G0383 PF02594 Uncharacterised ACR, YggU family COG1872 US01_C0001G0385 PF08281 Sigma-70, region 4 US01_C0001G0385 PF04542 Sigma-70 region 2 US01_C0001G0387 PF02001 Protein of unknown function DUF134 US01_C0001G0392 PF00206 Lyase US01_C0001G0392 PF08328 Adenylosuccinate lyase C-terminal US01_C0001G0393 PF00709 Adenylosuccinate synthetase US01_C0001G0394 PF08032 RNA 2'-O ribose methyltransferase substrate binding US01_C0001G0394 PF00588 SpoU rRNA Methylase family US01_C0001G0395 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain US01_C0001G0395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase US01_C0001G0396 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain US01_C0001G0396 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain US01_C0001G0407 PF01807 CHC2 zinc finger US01_C0001G0407 PF10410 DnaB-helicase binding domain of primase US01_C0001G0407 PF08275 DNA primase catalytic core, N-terminal domain US01_C0001G0409 PF00085 Thioredoxin US01_C0001G0410 PF07992 Pyridine nucleotide-disulphide oxidoreductase US01_C0001G0411 PF02545 Maf-like protein US01_C0001G0413 PF00953 Glycosyl transferase family 4 US01_C0001G0417 PF01026 TatD related DNase US01_C0001G0418 PF01588 Putative tRNA binding domain US01_C0001G0418 PF09334 tRNA synthetases class I (M) US01_C0001G0418 PF08264 Anticodon-binding domain of tRNA US01_C0001G0423 PF01336 OB-fold nucleic acid binding domain US01_C0001G0423 PF00152 tRNA synthetases class II (D, K and N) US01_C0001G0423 PF02938 GAD domain US01_C0001G0424 PF00768 D-alanyl-D-alanine carboxypeptidase US01_C0001G0424 PF07943 Penicillin-binding protein 5, C-terminal domain US01_C0001G0426 PF00749 tRNA synthetases class I (E and Q), catalytic domain US01_C0001G0428 PF02130 Uncharacterized protein family UPF0054 US01_C0001G0429 PF12169 DNA polymerase III subunits gamma and tau domain III US01_C0001G0431 PF01725 Ham1 family US01_C0001G0432 PF01791 DeoC/LacD family aldolase US01_C0001G0434 PF00690 Cation transporter/ATPase, N-terminus US01_C0001G0434 PF00689 Cation transporting ATPase, C-terminus US01_C0001G0442 PF00483 Nucleotidyl transferase US01_C0001G0445 PF01765 Ribosome recycling factor US01_C0001G0446 PF17820 PDZ domain US01_C0001G0446 PF02163 Peptidase family M50 US01_C0001G0448 PF11258 Protein of unknown function (DUF3048) N-terminal domain US01_C0001G0448 PF17479 Protein of unknown function (DUF3048) C-terminal domain US01_C0001G0450 PF07549 SecD/SecF GG Motif US01_C0001G0450 PF02355 Protein export membrane protein US01_C0001G0451 PF02355 Protein export membrane protein US01_C0001G0451 PF07549 SecD/SecF GG Motif US01_C0001G0452 PF01743 Poly A polymerase head domain US01_C0001G0452 PF12627 Probable RNA and SrmB- binding site of polymerase A US01_C0001G0452 PF13735 tRNA nucleotidyltransferase domain 2 putative US01_C0001G0453 PF02272 DHHA1 domain US01_C0001G0453 PF17768 RecJ OB domain US01_C0001G0453 PF10141 Single-strand DNA-specific exonuclease, C terminal domain US01_C0001G0453 PF01368 DHH family US01_C0001G0454 PF13462 Thioredoxin US01_C0001G0454 PF06965 Na+/H+ antiporter 1 US01_C0001G0455 PF05175 Methyltransferase small domain US01_C0001G0459 PF01228 Glycine radical US01_C0001G0459 PF02901 Pyruvate formate lyase-like US01_C0001G0460 PF04055 Radical SAM superfamily US01_C0001G0462 PF01467 Cytidylyltransferase-like US01_C0001G0464 PF03372 Endonuclease/Exonuclease/phosphatase family US01_C0001G0466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase US01_C0001G0466 PF00512 His Kinase A (phospho-acceptor) domain US01_C0001G0469 PF00072 Response regulator receiver domain US01_C0001G0469 PF00486 Transcriptional regulatory protein, C terminal US01_C0001G0473 PF00535 Glycosyl transferase family 2 US01_C0001G0475 PF00795 Carbon-nitrogen hydrolase US01_C0001G0475 PF00535 Glycosyl transferase family 2 US01_C0001G0476 PF16363 GDP-mannose 4,6 dehydratase US01_C0001G0477 PF16363 GDP-mannose 4,6 dehydratase US01_C0001G0478 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain US01_C0001G0478 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain US01_C0001G0478 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain US01_C0001G0479 PF01746 tRNA (Guanine-1)-methyltransferase US01_C0001G0481 PF16363 GDP-mannose 4,6 dehydratase US01_C0001G0483 PF03816 Cell envelope-related transcriptional attenuator domain US01_C0001G0490 PF00535 Glycosyl transferase family 2 US01_C0001G0491 PF00535 Glycosyl transferase family 2 US01_C0001G0492 PF00535 Glycosyl transferase family 2 US01_C0001G0493 PF00535 Glycosyl transferase family 2 US01_C0001G0497 PF05746 DALR anticodon binding domain US01_C0001G0497 PF00750 tRNA synthetases class I (R) US01_C0001G0497 PF03485 Arginyl tRNA synthetase N terminal domain US01_C0001G0498 PF00535 Glycosyl transferase family 2 US01_C0001G0499 PF00534 Glycosyl transferases group 1 US01_C0001G0499 PF13439 Glycosyltransferase Family 4 US01_C0001G0501 PF16363 GDP-mannose 4,6 dehydratase US01_C0001G0506 PF03275 UDP-galactopyranose mutase US01_C0001G0507 PF01370 NAD dependent epimerase/dehydratase family US01_C0001G0508 PF00535 Glycosyl transferase family 2 US01_C0001G0519 PF00294 pfkB family carbohydrate kinase US01_C0001G0520 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain US01_C0001G0520 PF05221 S-adenosyl-L-homocysteine hydrolase US01_C0001G0526 PF01370 NAD dependent epimerase/dehydratase family US01_C0001G0529 PF13439 Glycosyltransferase Family 4 US01_C0001G0529 PF00534 Glycosyl transferases group 1 US01_C0001G0531 PF02075 Crossover junction endodeoxyribonuclease RuvC US01_C0001G0532 PF07499 RuvA, C-terminal domain US01_C0001G0532 PF01330 RuvA N terminal domain US01_C0001G0538 PF13439 Glycosyltransferase Family 4 US01_C0001G0540 PF00534 Glycosyl transferases group 1 US01_C0001G0542 PF00483 Nucleotidyl transferase US01_C0001G0542 PF01050 Mannose-6-phosphate isomerase US01_C0001G0543 PF02397 Bacterial sugar transferase US01_C0001G0545 PF11967 Recombination protein O N terminal US01_C0001G0545 PF02565 Recombination protein O C terminal US01_C0001G0546 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) US01_C0001G0546 PF03129 Anticodon binding domain US01_C0001G0548 PF02381 MraZ protein, putative antitoxin-like US01_C0001G0549 PF01795 MraW methylase family US01_C0001G0551 PF00905 Penicillin binding protein transpeptidase domain US01_C0001G0551 PF03717 Penicillin-binding Protein dimerisation domain US01_C0001G0552 PF02195 ParB-like nuclease domain US01_C0001G0552 PF17762 HTH domain found in ParB protein US01_C0001G0553 PF00291 Pyridoxal-phosphate dependent enzyme US01_C0001G0554 PF00579 tRNA synthetases class I (W and Y) US01_C0001G0555 PF01016 Ribosomal L27 protein US01_C0001G0556 PF10672 S-adenosylmethionine-dependent methyltransferase US01_C0001G0556 PF01170 Putative RNA methylase family UPF0020 US01_C0001G0556 PF02926 THUMP domain US01_C0001G0557 PF00829 Ribosomal prokaryotic L21 protein US01_C0001G0558 PF01098 Cell cycle protein US01_C0001G0559 PF00133 tRNA synthetases class I (I, L, M and V) US01_C0001G0559 PF08264 Anticodon-binding domain of tRNA US01_C0001G0560 PF00091 Tubulin/FtsZ family, GTPase domain US01_C0001G0560 PF12327 FtsZ family, C-terminal domain US01_C0001G0561 PF02491 SHS2 domain inserted in FTSA US01_C0001G0563 PF04101 Glycosyltransferase family 28 C-terminal domain US01_C0001G0563 PF03033 Glycosyltransferase family 28 N-terminal domain US01_C0001G0564 PF01098 Cell cycle protein US01_C0001G0565 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 US01_C0001G0565 PF00953 Glycosyl transferase family 4 US01_C0001G0566 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) US01_C0001G0567 PF01565 FAD binding domain US01_C0001G0567 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain US01_C0001G0568 PF01509 TruB family pseudouridylate synthase (N terminal domain) US01_C0001G0568 PF16198 tRNA pseudouridylate synthase B C-terminal domain US01_C0001G0569 PF10502 Signal peptidase, peptidase S26 US01_C0001G0573 PF01168 Alanine racemase, N-terminal domain US01_C0001G0573 PF00842 Alanine racemase, C-terminal domain US01_C0001G0581 PF01435 Peptidase family M48 US01_C0001G0582 PF02686 Glu-tRNAGln amidotransferase C subunit US01_C0001G0583 PF01425 Amidase US01_C0001G0584 PF02934 GatB/GatE catalytic domain US01_C0001G0584 PF02637 GatB domain US01_C0001G0585 PF02811 PHP domain US01_C0001G0585 PF17657 Bacterial DNA polymerase III alpha subunit finger domain US01_C0001G0585 PF01336 OB-fold nucleic acid binding domain US01_C0001G0585 PF07733 Bacterial DNA polymerase III alpha NTPase domain US01_C0001G0585 PF14579 Helix-hairpin-helix motif US01_C0001G0586 PF00456 Transketolase, thiamine diphosphate binding domain US01_C0001G0587 PF02780 Transketolase, C-terminal domain US01_C0001G0587 PF02779 Transketolase, pyrimidine binding domain US01_C0001G0590 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain US01_C0001G0590 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain US01_C0001G0590 PF06827 Zinc finger found in FPG and IleRS US01_C0001G0592 PF07516 SecA Wing and Scaffold domain US01_C0001G0592 PF07517 SecA DEAD-like domain US01_C0001G0592 PF02810 SEC-C motif US01_C0001G0592 PF01043 SecA preprotein cross-linking domain US01_C0001G0593 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) US01_C0001G0593 PF02403 Seryl-tRNA synthetase N-terminal domain US01_C0001G0597 PF03449 Transcription elongation factor, N-terminal US01_C0001G0597 PF01272 Transcription elongation factor, GreA/GreB, C-term US01_C0001G0601 PF01132 Elongation factor P (EF-P) OB domain US01_C0001G0601 PF08207 Elongation factor P (EF-P) KOW-like domain US01_C0001G0601 PF09285 Elongation factor P, C-terminal US01_C0001G0602 PF00152 tRNA synthetases class II (D, K and N) US01_C0001G0603 PF01699 Sodium/calcium exchanger protein US01_C0001G0612 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II US01_C0001G0612 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III US01_C0001G0612 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain US01_C0001G0612 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I US01_C0001G0613 PF01380 SIS domain US01_C0001G0613 PF10432 Bacterial phospho-glucose isomerase C-terminal SIS domain US01_C0001G0614 PF00113 Enolase, C-terminal TIM barrel domain US01_C0001G0614 PF03952 Enolase, N-terminal domain US01_C0001G0615 PF01726 LexA DNA binding domain US01_C0001G0615 PF00717 Peptidase S24-like US01_C0001G0616 PF01923 Cobalamin adenosyltransferase US01_C0001G0617 PF06418 CTP synthase N-terminus US01_C0001G0617 PF00117 Glutamine amidotransferase class-I US01_C0001G0618 PF01245 Ribosomal protein L19 US01_C0001G0619 PF02021 Uncharacterised protein family UPF0102 US01_C0001G0622 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain US01_C0001G0626 PF00565 Staphylococcal nuclease homologue US01_C0001G0627 PF00578 AhpC/TSA family US01_C0001G0628 PF07883 Cupin domain US01_C0001G0630 PF06415 BPG-independent PGAM N-terminus (iPGM_N) US01_C0001G0630 PF01676 Metalloenzyme superfamily US01_C0001G0631 PF03952 Enolase, N-terminal domain US01_C0001G0631 PF00113 Enolase, C-terminal TIM barrel domain US01_C0001G0634 PF01938 TRAM domain US01_C0001G0634 PF04055 Radical SAM superfamily US01_C0001G0634 PF00919 Uncharacterized protein family UPF0004 US01_C0001G0636 PF01594 AI-2E family transporter US01_C0001G0638 PF00248 Aldo/keto reductase family US01_C0001G0650 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase US01_C0001G0650 PF14572 Phosphoribosyl synthetase-associated domain US01_C0001G0651 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) US01_C0001G0651 PF04073 Aminoacyl-tRNA editing domain US01_C0001G0651 PF03129 Anticodon binding domain US01_C0001G0654 PF01230 HIT domain US01_C0001G0655 PF00072 Response regulator receiver domain US01_C0001G0655 PF00486 Transcriptional regulatory protein, C terminal US01_C0001G0657 PF13335 Magnesium chelatase, subunit ChlI C-terminal US01_C0001G0657 PF01078 Magnesium chelatase, subunit ChlI US01_C0001G0658 PF01225 Mur ligase family, catalytic domain US01_C0001G0658 PF02875 Mur ligase family, glutamate ligase domain US01_C0001G0658 PF08245 Mur ligase middle domain US01_C0001G0659 PF08245 Mur ligase middle domain US01_C0001G0659 PF02875 Mur ligase family, glutamate ligase domain US01_C0001G0659 PF01225 Mur ligase family, catalytic domain US01_C0001G0665 PF00005 ABC transporter US01_C0001G0665 PF00664 ABC transporter transmembrane region US01_C0001G0667 PF00106 short chain dehydrogenase US01_C0001G0668 PF00570 HRDC domain US01_C0001G0668 PF16124 RecQ zinc-binding US01_C0001G0668 PF09382 RQC domain US01_C0001G0668 PF00271 Helicase conserved C-terminal domain US01_C0001G0668 PF00270 DEAD/DEAH box helicase US01_C0001G0671 PF01209 ubiE/COQ5 methyltransferase family US01_C0001G0673 PF00248 Aldo/keto reductase family US01_C0001G0680 PF01451 Low molecular weight phosphotyrosine protein phosphatase US01_C0001G0682 PF03073 TspO/MBR family US01_C0001G0684 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD US01_C0001G0686 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg US01_C0001G0686 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase US01_C0001G0686 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II US01_C0001G0687 PF00258 Flavodoxin US01_C0001G0689 PF00391 PEP-utilising enzyme, mobile domain US01_C0001G0689 PF00224 Pyruvate kinase, barrel domain US01_C0001G0689 PF02887 Pyruvate kinase, alpha/beta domain US01_C0001G0690 PF00300 Histidine phosphatase superfamily (branch 1) US01_C0001G0697 PF17757 UvrB interaction domain US01_C0001G0697 PF12344 Ultra-violet resistance protein B US01_C0001G0697 PF02151 UvrB/uvrC motif US01_C0001G0697 PF04851 Type III restriction enzyme, res subunit US01_C0001G0697 PF00271 Helicase conserved C-terminal domain US01_C0001G0699 PF17760 UvrA interaction domain US01_C0001G0699 PF17755 UvrA DNA-binding domain US01_C0001G0701 PF08459 UvrC Helix-hairpin-helix N-terminal US01_C0001G0701 PF02151 UvrB/uvrC motif US01_C0001G0701 PF12826 Helix-hairpin-helix motif US01_C0001G0701 PF01541 GIY-YIG catalytic domain US01_C0001G0702 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV US01_C0001G0704 PF18030 RimK PreATP-grasp domain US01_C0001G0704 PF08443 RimK-like ATP-grasp domain US01_C0001G0717 PF00004 ATPase family associated with various cellular activities (AAA) US01_C0001G0717 PF02190 ATP-dependent protease La (LON) substrate-binding domain US01_C0001G0717 PF05362 Lon protease (S16) C-terminal proteolytic domain US01_C0001G0725 PF00121 Triosephosphate isomerase US01_C0001G0726 PF00580 UvrD/REP helicase N-terminal domain US01_C0001G0726 PF13361 UvrD-like helicase C-terminal domain US01_C0001G0727 PF02388 FemAB family US01_C0001G0728 PF00696 Amino acid kinase family US01_C0001G0729 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain US01_C0001G0729 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain US01_C0001G0730 PF05697 Bacterial trigger factor protein (TF) US01_C0001G0730 PF05698 Bacterial trigger factor protein (TF) C-terminus US01_C0001G0730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase US01_C0001G0734 PF00707 Translation initiation factor IF-3, C-terminal domain US01_C0001G0734 PF05198 Translation initiation factor IF-3, N-terminal domain US01_C0001G0735 PF01632 Ribosomal protein L35 US01_C0001G0736 PF00453 Ribosomal protein L20 US01_C0001G0738 PF01409 tRNA synthetases class II core domain (F) US01_C0001G0738 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain US01_C0001G0739 PF03483 B3/4 domain US01_C0001G0739 PF01588 Putative tRNA binding domain US01_C0001G0739 PF03147 Ferredoxin-fold anticodon binding domain US01_C0001G0739 PF03484 tRNA synthetase B5 domain US01_C0001G0739 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain US01_C0001G0741 PF00905 Penicillin binding protein transpeptidase domain US01_C0001G0741 PF00912 Transglycosylase US01_C0001G0742 PF00579 tRNA synthetases class I (W and Y) US01_C0001G0742 PF01479 S4 domain US01_C0001G0744 PF00270 DEAD/DEAH box helicase US01_C0001G0744 PF00271 Helicase conserved C-terminal domain US01_C0001G0744 PF17191 RecG wedge domain US01_C0001G0750 PF00886 Ribosomal protein S16 US01_C0001G0751 PF00035 Double-stranded RNA binding motif US01_C0001G0751 PF14622 Ribonuclease-III-like US01_C0001G0752 PF00550 Phosphopantetheine attachment site US01_C0001G0753 PF01029 NusB family US01_C0001G0765 PF08334 Type II secretion system (T2SS), protein G US01_C0001G0765 PF07963 Prokaryotic N-terminal methylation motif US01_C0001G0769 PF00482 Type II secretion system (T2SS), protein F US01_C0001G0770 PF00437 Type II/IV secretion system protein US01_C0001G0771 PF00437 Type II/IV secretion system protein US01_C0001G0771 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain US01_C0001G0773 PF01751 Toprim domain US01_C0001G0773 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase US01_C0001G0773 PF00986 DNA gyrase B subunit, carboxyl terminus US01_C0001G0773 PF00204 DNA gyrase B US01_C0001G0774 PF02833 DHHA2 domain US01_C0001G0774 PF01368 DHH family US01_C0001G0775 PF00521 DNA gyrase/topoisomerase IV, subunit A US01_C0001G0775 PF03989 DNA gyrase C-terminal domain, beta-propeller US01_C0001G0778 PF02899 Phage integrase, N-terminal SAM-like domain US01_C0001G0778 PF00589 Phage integrase family US01_C0001G0780 PF01709 Transcriptional regulator US01_C0001G0783 PF00889 Elongation factor TS US01_C0001G0784 PF00318 Ribosomal protein S2 US01_C0001G0785 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain US01_C0001G0785 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain US01_C0001G0786 PF00464 Serine hydroxymethyltransferase US01_C0001G0790 PF00849 RNA pseudouridylate synthase US01_C0001G0790 PF01479 S4 domain US01_C0001G0795 PF03796 DnaB-like helicase C terminal domain US01_C0001G0795 PF00772 DnaB-like helicase N terminal domain US01_C0001G0801 PF13393 Histidyl-tRNA synthetase US01_C0001G0801 PF03129 Anticodon binding domain US01_C0001G0802 PF01197 Ribosomal protein L31 US01_C0001G0803 PF03462 PCRF domain US01_C0001G0803 PF00472 RF-1 domain US01_C0001G0804 PF17820 PDZ domain US01_C0001G0804 PF03572 Peptidase family S41 US01_C0001G0804 PF01471 Putative peptidoglycan binding domain US01_C0001G0805 PF01084 Ribosomal protein S18 US01_C0001G0806 PF00436 Single-strand binding protein family US01_C0001G0807 PF01250 Ribosomal protein S6 US01_C0001G0809 PF06071 Protein of unknown function (DUF933) US01_C0001G0809 PF01926 50S ribosome-binding GTPase US01_C0001G0811 PF10417 C-terminal domain of 1-Cys peroxiredoxin US01_C0001G0811 PF00578 AhpC/TSA family US01_C0001G0815 PF01702 Queuine tRNA-ribosyltransferase US01_C0001G0816 PF00403 Heavy-metal-associated domain US01_C0001G0818 PF00403 Heavy-metal-associated domain US01_C0001G0819 PF01022 Bacterial regulatory protein, arsR family US01_C0001G0820 PF04002 RadC-like JAB domain US01_C0001G0821 PF01406 tRNA synthetases class I (C) catalytic domain US01_C0001G0826 PF13662 Toprim domain US01_C0001G0826 PF02132 RecR protein US01_C0001G0827 PF02223 Thymidylate kinase US01_C0001G0829 PF00692 dUTPase US01_C0001G0830 PF16123 Hydroxyacylglutathione hydrolase C-terminus US01_C0001G0830 PF00753 Metallo-beta-lactamase superfamily US01_C0001G0832 PF00186 Dihydrofolate reductase US01_C0001G0834 PF00303 Thymidylate synthase US01_C0001G0836 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region US01_C0001G0837 PF00294 pfkB family carbohydrate kinase US01_C0001G0837 PF01467 Cytidylyltransferase-like US01_C0001G0838 PF02540 NAD synthase US01_C0001G0841 PF01467 Cytidylyltransferase-like US01_C0001G0842 PF01396 Topoisomerase DNA binding C4 zinc finger US01_C0001G0842 PF01751 Toprim domain US01_C0001G0842 PF01131 DNA topoisomerase US01_C0001G0843 PF17782 DprA winged helix domain US01_C0001G0843 PF02481 DNA recombination-mediator protein A US01_C0001G0844 PF03717 Penicillin-binding Protein dimerisation domain US01_C0001G0844 PF00905 Penicillin binding protein transpeptidase domain US01_C0001G0850 PF01327 Polypeptide deformylase US01_C0001G0851 PF00551 Formyl transferase US01_C0001G0851 PF02911 Formyl transferase, C-terminal domain US01_C0001G0852 PF00830 Ribosomal L28 family US01_C0001G0853 PF02163 Peptidase family M50 US01_C0001G0862 PF00471 Ribosomal protein L33 US01_C0001G0866 PF00483 Nucleotidyl transferase US01_C0001G0870 PF00467 KOW motif US01_C0001G0870 PF02357 Transcription termination factor nusG US01_C0001G0871 PF03946 Ribosomal protein L11, N-terminal domain US01_C0001G0871 PF00298 Ribosomal protein L11, RNA binding domain US01_C0001G0872 PF00687 Ribosomal protein L1p/L10e family US01_C0001G0874 PF03129 Anticodon binding domain US01_C0001G0874 PF02824 TGS domain US01_C0001G0874 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) US01_C0001G0874 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain US01_C0001G0876 PF02687 FtsX-like permease family US01_C0001G0876 PF12704 MacB-like periplasmic core domain US01_C0001G0877 PF00005 ABC transporter US01_C0001G0880 PF00466 Ribosomal protein L10 US01_C0001G0881 PF16320 Ribosomal protein L7/L12 dimerisation domain US01_C0001G0881 PF00542 Ribosomal protein L7/L12 C-terminal domain US01_C0001G0883 PF12728 Helix-turn-helix domain US01_C0001G0884 PF03808 Glycosyl transferase WecB/TagA/CpsF family US01_C0001G0885 PF08245 Mur ligase middle domain US01_C0001G0885 PF02875 Mur ligase family, glutamate ligase domain US01_C0001G0886 PF02875 Mur ligase family, glutamate ligase domain US01_C0001G0886 PF01225 Mur ligase family, catalytic domain US01_C0001G0886 PF08245 Mur ligase middle domain US01_C0001G0892 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain US01_C0001G0892 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain US01_C0001G0896 PF00334 Nucleoside diphosphate kinase US01_C0001G0897 PF00675 Insulinase (Peptidase family M16) US01_C0001G0897 PF05193 Peptidase M16 inactive domain US01_C0001G0901 PF09334 tRNA synthetases class I (M) US01_C0001G0901 PF13603 Leucyl-tRNA synthetase, Domain 2 US01_C0001G0901 PF00133 tRNA synthetases class I (I, L, M and V) US01_C0001G0901 PF08264 Anticodon-binding domain of tRNA