locus-tag class description NAREPO1_00010 PF02767 DNA polymerase III beta subunit, central domain NAREPO1_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NAREPO1_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NAREPO1_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAREPO1_00020 PF18053 DNA gyrase B subunit insert domain NAREPO1_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NAREPO1_00020 PF00204 DNA gyrase B NAREPO1_00020 PF01751 Toprim domain NAREPO1_00030 PF01336 OB-fold nucleic acid binding domain NAREPO1_00030 PF00152 tRNA synthetases class II (D, K and N) NAREPO1_00040 PF03462 PCRF domain NAREPO1_00040 PF00472 RF-1 domain NAREPO1_00050 PF00575 S1 RNA binding domain NAREPO1_00060 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NAREPO1_00070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NAREPO1_00070 PF02403 Seryl-tRNA synthetase N-terminal domain NAREPO1_00080 PF01176 Translation initiation factor 1A / IF-1 NAREPO1_00090 PF01523 Putative modulator of DNA gyrase NAREPO1_00100 PF01795 MraW methylase family NAREPO1_00110 PF08245 Mur ligase middle domain NAREPO1_00110 PF02875 Mur ligase family, glutamate ligase domain NAREPO1_00120 PF08245 Mur ligase middle domain NAREPO1_00120 PF02875 Mur ligase family, glutamate ligase domain NAREPO1_00130 PF00953 Glycosyl transferase family 4 NAREPO1_00130 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NAREPO1_00140 PF02875 Mur ligase family, glutamate ligase domain NAREPO1_00140 PF08245 Mur ligase middle domain NAREPO1_00150 PF04101 Glycosyltransferase family 28 C-terminal domain NAREPO1_00150 PF03033 Glycosyltransferase family 28 N-terminal domain NAREPO1_00160 PF01225 Mur ligase family, catalytic domain NAREPO1_00160 PF02875 Mur ligase family, glutamate ligase domain NAREPO1_00160 PF08245 Mur ligase middle domain NAREPO1_00170 PF07516 SecA Wing and Scaffold domain NAREPO1_00170 PF01043 SecA preprotein cross-linking domain NAREPO1_00170 PF07517 SecA DEAD-like domain NAREPO1_00180 PF00924 Mechanosensitive ion channel NAREPO1_00190 PF00011 Hsp20/alpha crystallin family NAREPO1_00240 PF07497 Rho termination factor, RNA-binding domain NAREPO1_00240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NAREPO1_00240 PF07498 Rho termination factor, N-terminal domain NAREPO1_00280 PF00118 TCP-1/cpn60 chaperonin family NAREPO1_00290 PF00166 Chaperonin 10 Kd subunit NAREPO1_00310 PF00772 DnaB-like helicase N terminal domain NAREPO1_00310 PF03796 DnaB-like helicase C terminal domain NAREPO1_00320 PF01367 5'-3' exonuclease, C-terminal SAM fold NAREPO1_00320 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NAREPO1_00340 PF01171 PP-loop family NAREPO1_00340 PF09179 TilS substrate binding domain NAREPO1_00350 PF04073 Aminoacyl-tRNA editing domain NAREPO1_00350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NAREPO1_00350 PF03129 Anticodon binding domain NAREPO1_00360 PF03880 DbpA RNA binding domain NAREPO1_00360 PF00270 DEAD/DEAH box helicase NAREPO1_00360 PF12343 Cold shock protein DEAD box A NAREPO1_00360 PF00271 Helicase conserved C-terminal domain NAREPO1_00370 PF00575 S1 RNA binding domain NAREPO1_00370 PF00013 KH domain NAREPO1_00370 PF01138 3' exoribonuclease family, domain 1 NAREPO1_00370 PF03725 3' exoribonuclease family, domain 2 NAREPO1_00370 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NAREPO1_00380 PF00312 Ribosomal protein S15 NAREPO1_00400 PF11987 Translation-initiation factor 2 NAREPO1_00400 PF04760 Translation initiation factor IF-2, N-terminal region NAREPO1_00400 PF00009 Elongation factor Tu GTP binding domain NAREPO1_00400 PF08364 Bacterial translation initiation factor IF-2 associated region NAREPO1_00410 PF13184 NusA-like KH domain NAREPO1_00410 PF08529 NusA N-terminal domain NAREPO1_00440 PF00004 ATPase family associated with various cellular activities (AAA) NAREPO1_00440 PF17862 AAA+ lid domain NAREPO1_00440 PF01434 Peptidase family M41 NAREPO1_00440 PF06480 FtsH Extracellular NAREPO1_00450 PF01728 FtsJ-like methyltransferase NAREPO1_00460 PF03449 Transcription elongation factor, N-terminal NAREPO1_00460 PF01272 Transcription elongation factor, GreA/GreB, C-term NAREPO1_00470 PF01018 GTP1/OBG NAREPO1_00470 PF01926 50S ribosome-binding GTPase NAREPO1_00480 PF01016 Ribosomal L27 protein NAREPO1_00490 PF00829 Ribosomal prokaryotic L21 protein NAREPO1_00500 PF01197 Ribosomal protein L31 NAREPO1_00510 PF00471 Ribosomal protein L33 NAREPO1_00520 PF00830 Ribosomal L28 family NAREPO1_00530 PF00579 tRNA synthetases class I (W and Y) NAREPO1_00540 PF00719 Inorganic pyrophosphatase NAREPO1_00550 PF02666 Phosphatidylserine decarboxylase NAREPO1_00560 PF00929 Exonuclease NAREPO1_00590 PF01145 SPFH domain / Band 7 family NAREPO1_00600 PF00588 SpoU rRNA Methylase family NAREPO1_00600 PF08032 RNA 2'-O ribose methyltransferase substrate binding NAREPO1_00610 PF01250 Ribosomal protein S6 NAREPO1_00620 PF01084 Ribosomal protein S18 NAREPO1_00630 PF01281 Ribosomal protein L9, N-terminal domain NAREPO1_00630 PF03948 Ribosomal protein L9, C-terminal domain NAREPO1_00640 PF01027 Inhibitor of apoptosis-promoting Bax1 NAREPO1_00650 PF01098 Cell cycle protein NAREPO1_00660 PF03717 Penicillin-binding Protein dimerisation domain NAREPO1_00660 PF00905 Penicillin binding protein transpeptidase domain NAREPO1_00690 PF00133 tRNA synthetases class I (I, L, M and V) NAREPO1_00690 PF13603 Leucyl-tRNA synthetase, Domain 2 NAREPO1_00690 PF08264 Anticodon-binding domain of tRNA NAREPO1_00700 PF02130 Uncharacterized protein family UPF0054 NAREPO1_00710 PF09190 DALR domain NAREPO1_00710 PF01406 tRNA synthetases class I (C) catalytic domain NAREPO1_00750 PF12169 DNA polymerase III subunits gamma and tau domain III NAREPO1_00760 PF01264 Chorismate synthase NAREPO1_00770 PF10417 C-terminal domain of 1-Cys peroxiredoxin NAREPO1_00770 PF00578 AhpC/TSA family NAREPO1_00800 PF00380 Ribosomal protein S9/S16 NAREPO1_00810 PF00572 Ribosomal protein L13 NAREPO1_00820 PF13180 PDZ domain NAREPO1_00820 PF00595 PDZ domain NAREPO1_00830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NAREPO1_00840 PF00464 Serine hydroxymethyltransferase NAREPO1_00850 PF00883 Cytosol aminopeptidase family, catalytic domain NAREPO1_00850 PF02789 Cytosol aminopeptidase family, N-terminal domain NAREPO1_00860 PF08264 Anticodon-binding domain of tRNA NAREPO1_00860 PF00133 tRNA synthetases class I (I, L, M and V) NAREPO1_00860 PF10458 Valyl tRNA synthetase tRNA binding arm NAREPO1_00880 PF03979 Sigma-70 factor, region 1.1 NAREPO1_00880 PF00140 Sigma-70 factor, region 1.2 NAREPO1_00880 PF04546 Sigma-70, non-essential region NAREPO1_00880 PF04542 Sigma-70 region 2 NAREPO1_00880 PF04539 Sigma-70 region 3 NAREPO1_00880 PF04545 Sigma-70, region 4 NAREPO1_00890 PF10410 DnaB-helicase binding domain of primase NAREPO1_00890 PF08275 DNA primase catalytic core, N-terminal domain NAREPO1_00890 PF08278 DNA primase DnaG DnaB-binding NAREPO1_00890 PF01807 CHC2 zinc finger NAREPO1_00900 PF01165 Ribosomal protein S21 NAREPO1_00910 PF00814 Glycoprotease family NAREPO1_00920 PF12627 Probable RNA and SrmB- binding site of polymerase A NAREPO1_00920 PF01743 Poly A polymerase head domain NAREPO1_00940 PF08264 Anticodon-binding domain of tRNA NAREPO1_00940 PF00133 tRNA synthetases class I (I, L, M and V) NAREPO1_00940 PF06827 Zinc finger found in FPG and IleRS NAREPO1_00950 PF00398 Ribosomal RNA adenine dimethylase NAREPO1_00970 PF01523 Putative modulator of DNA gyrase NAREPO1_00980 PF00391 PEP-utilising enzyme, mobile domain NAREPO1_00980 PF05524 PEP-utilising enzyme, N-terminal NAREPO1_00980 PF02896 PEP-utilising enzyme, TIM barrel domain NAREPO1_01000 PF03120 NAD-dependent DNA ligase OB-fold domain NAREPO1_01000 PF01653 NAD-dependent DNA ligase adenylation domain NAREPO1_01000 PF12826 Helix-hairpin-helix motif NAREPO1_01030 PF00749 tRNA synthetases class I (E and Q), catalytic domain NAREPO1_01080 PF00004 ATPase family associated with various cellular activities (AAA) NAREPO1_01080 PF05362 Lon protease (S16) C-terminal proteolytic domain NAREPO1_01080 PF02190 ATP-dependent protease La (LON) substrate-binding domain NAREPO1_01100 PF00929 Exonuclease NAREPO1_01110 PF00075 RNase H NAREPO1_01120 PF00750 tRNA synthetases class I (R) NAREPO1_01120 PF05746 DALR anticodon binding domain NAREPO1_01120 PF03485 Arginyl tRNA synthetase N terminal domain NAREPO1_01130 PF03023 Lipid II flippase MurJ NAREPO1_01150 PF01230 HIT domain NAREPO1_01170 PF00550 Phosphopantetheine attachment site NAREPO1_01180 PF01783 Ribosomal L32p protein family NAREPO1_01190 PF01479 S4 domain NAREPO1_01190 PF00849 RNA pseudouridylate synthase NAREPO1_01200 PF10150 Ribonuclease E/G family NAREPO1_01200 PF00575 S1 RNA binding domain NAREPO1_01220 PF01336 OB-fold nucleic acid binding domain NAREPO1_01220 PF00152 tRNA synthetases class II (D, K and N) NAREPO1_01230 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NAREPO1_01240 PF00162 Phosphoglycerate kinase NAREPO1_01250 PF02390 Putative methyltransferase NAREPO1_01260 PF01464 Transglycosylase SLT domain NAREPO1_01260 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NAREPO1_01270 PF13932 GidA associated domain NAREPO1_01270 PF01134 Glucose inhibited division protein A NAREPO1_01280 PF01565 FAD binding domain NAREPO1_01280 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NAREPO1_01290 PF00886 Ribosomal protein S16 NAREPO1_01310 PF01245 Ribosomal protein L19 NAREPO1_01320 PF00793 DAHP synthetase I family NAREPO1_01330 PF02153 Prephenate dehydrogenase NAREPO1_01330 PF01817 Chorismate mutase type II NAREPO1_01340 PF01479 S4 domain NAREPO1_01340 PF00849 RNA pseudouridylate synthase NAREPO1_01350 PF01202 Shikimate kinase NAREPO1_01360 PF01761 3-dehydroquinate synthase NAREPO1_01370 PF01195 Peptidyl-tRNA hydrolase NAREPO1_01380 PF03550 Outer membrane lipoprotein LolB NAREPO1_01390 PF00472 RF-1 domain NAREPO1_01390 PF03462 PCRF domain NAREPO1_01400 PF04307 LexA-binding, inner membrane-associated putative hydrolase NAREPO1_01410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NAREPO1_01410 PF03129 Anticodon binding domain NAREPO1_01410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NAREPO1_01420 PF05198 Translation initiation factor IF-3, N-terminal domain NAREPO1_01420 PF00707 Translation initiation factor IF-3, C-terminal domain NAREPO1_01440 PF00453 Ribosomal protein L20 NAREPO1_01450 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NAREPO1_01450 PF01409 tRNA synthetases class II core domain (F) NAREPO1_01460 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NAREPO1_01460 PF03147 Ferredoxin-fold anticodon binding domain NAREPO1_01460 PF03483 B3/4 domain NAREPO1_01460 PF03484 tRNA synthetase B5 domain NAREPO1_01460 PF01588 Putative tRNA binding domain NAREPO1_01470 PF00266 Aminotransferase class-V NAREPO1_01490 PF01327 Polypeptide deformylase NAREPO1_01500 PF00551 Formyl transferase NAREPO1_01500 PF02911 Formyl transferase, C-terminal domain NAREPO1_01510 PF01196 Ribosomal protein L17 NAREPO1_01520 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NAREPO1_01520 PF01000 RNA polymerase Rpb3/RpoA insert domain NAREPO1_01520 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NAREPO1_01530 PF01479 S4 domain NAREPO1_01530 PF00163 Ribosomal protein S4/S9 N-terminal domain NAREPO1_01540 PF00411 Ribosomal protein S11 NAREPO1_01550 PF00416 Ribosomal protein S13/S18 NAREPO1_01560 PF00444 Ribosomal protein L36 NAREPO1_01570 PF00344 SecY translocase NAREPO1_01580 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NAREPO1_01590 PF03719 Ribosomal protein S5, C-terminal domain NAREPO1_01590 PF00333 Ribosomal protein S5, N-terminal domain NAREPO1_01600 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NAREPO1_01610 PF00347 Ribosomal protein L6 NAREPO1_01620 PF00410 Ribosomal protein S8 NAREPO1_01630 PF00253 Ribosomal protein S14p/S29e NAREPO1_01640 PF00281 Ribosomal protein L5 NAREPO1_01640 PF00673 ribosomal L5P family C-terminus NAREPO1_01650 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NAREPO1_01660 PF00238 Ribosomal protein L14p/L23e NAREPO1_01670 PF00366 Ribosomal protein S17 NAREPO1_01690 PF00252 Ribosomal protein L16p/L10e NAREPO1_01700 PF07650 KH domain NAREPO1_01700 PF00189 Ribosomal protein S3, C-terminal domain NAREPO1_01710 PF00237 Ribosomal protein L22p/L17e NAREPO1_01720 PF00203 Ribosomal protein S19 NAREPO1_01730 PF03947 Ribosomal Proteins L2, C-terminal domain NAREPO1_01730 PF00181 Ribosomal Proteins L2, RNA binding domain NAREPO1_01750 PF00573 Ribosomal protein L4/L1 family NAREPO1_01760 PF00297 Ribosomal protein L3 NAREPO1_01770 PF00338 Ribosomal protein S10p/S20e NAREPO1_01780 PF00679 Elongation factor G C-terminus NAREPO1_01780 PF14492 Elongation Factor G, domain II NAREPO1_01780 PF03764 Elongation factor G, domain IV NAREPO1_01780 PF03144 Elongation factor Tu domain 2 NAREPO1_01780 PF00009 Elongation factor Tu GTP binding domain NAREPO1_01790 PF00177 Ribosomal protein S7p/S5e NAREPO1_01800 PF00164 Ribosomal protein S12/S23 NAREPO1_01810 PF04998 RNA polymerase Rpb1, domain 5 NAREPO1_01810 PF04997 RNA polymerase Rpb1, domain 1 NAREPO1_01810 PF05000 RNA polymerase Rpb1, domain 4 NAREPO1_01810 PF04983 RNA polymerase Rpb1, domain 3 NAREPO1_01810 PF00623 RNA polymerase Rpb1, domain 2 NAREPO1_01820 PF04563 RNA polymerase beta subunit NAREPO1_01820 PF10385 RNA polymerase beta subunit external 1 domain NAREPO1_01820 PF00562 RNA polymerase Rpb2, domain 6 NAREPO1_01820 PF04565 RNA polymerase Rpb2, domain 3 NAREPO1_01820 PF04560 RNA polymerase Rpb2, domain 7 NAREPO1_01820 PF04561 RNA polymerase Rpb2, domain 2 NAREPO1_01830 PF00542 Ribosomal protein L7/L12 C-terminal domain NAREPO1_01830 PF16320 Ribosomal protein L7/L12 dimerisation domain NAREPO1_01840 PF00466 Ribosomal protein L10 NAREPO1_01850 PF00687 Ribosomal protein L1p/L10e family NAREPO1_01860 PF03946 Ribosomal protein L11, N-terminal domain NAREPO1_01860 PF00298 Ribosomal protein L11, RNA binding domain NAREPO1_01870 PF00467 KOW motif NAREPO1_01870 PF02357 Transcription termination factor nusG NAREPO1_01880 PF00009 Elongation factor Tu GTP binding domain NAREPO1_01880 PF03144 Elongation factor Tu domain 2 NAREPO1_01880 PF03143 Elongation factor Tu C-terminal domain NAREPO1_01940 PF02599 Global regulator protein family NAREPO1_01950 PF01411 tRNA synthetases class II (A) NAREPO1_01950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NAREPO1_01950 PF02272 DHHA1 domain NAREPO1_01960 PF00154 recA bacterial DNA recombination protein NAREPO1_01980 PF00684 DnaJ central domain NAREPO1_01980 PF01556 DnaJ C terminal domain NAREPO1_01980 PF00226 DnaJ domain NAREPO1_01990 PF00012 Hsp70 protein NAREPO1_02000 PF00905 Penicillin binding protein transpeptidase domain NAREPO1_02000 PF14814 Bifunctional transglycosylase second domain NAREPO1_02000 PF00912 Transglycosylase NAREPO1_02010 PF00579 tRNA synthetases class I (W and Y) NAREPO1_02030 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NAREPO1_02030 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAREPO1_02050 PF01220 Dehydroquinase class II NAREPO1_02080 PF00436 Single-strand binding protein family NAREPO1_02090 PF03989 DNA gyrase C-terminal domain, beta-propeller NAREPO1_02090 PF00521 DNA gyrase/topoisomerase IV, subunit A NAREPO1_02100 PF00267 Gram-negative porin NAREPO1_02110 PF01820 D-ala D-ala ligase N-terminus NAREPO1_02110 PF07478 D-ala D-ala ligase C-terminus NAREPO1_02120 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NAREPO1_02120 PF00749 tRNA synthetases class I (E and Q), catalytic domain NAREPO1_02160 PF03372 Endonuclease/Exonuclease/phosphatase family NAREPO1_02170 PF00557 Metallopeptidase family M24 NAREPO1_02180 PF00318 Ribosomal protein S2 NAREPO1_02190 PF00889 Elongation factor TS NAREPO1_02200 PF01765 Ribosome recycling factor NAREPO1_02210 PF01255 Putative undecaprenyl diphosphate synthase NAREPO1_02230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NAREPO1_02230 PF14579 Helix-hairpin-helix motif NAREPO1_02230 PF02811 PHP domain NAREPO1_02230 PF07733 Bacterial DNA polymerase III alpha NTPase domain NAREPO1_02240 PF00313 'Cold-shock' DNA-binding domain NAREPO1_02250 PF03830 PTS system sorbose subfamily IIB component NAREPO1_02250 PF03610 PTS system fructose IIA component NAREPO1_02270 PF01926 50S ribosome-binding GTPase NAREPO1_02270 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NAREPO1_02280 PF13393 Histidyl-tRNA synthetase NAREPO1_02290 PF02092 Glycyl-tRNA synthetase beta subunit NAREPO1_02290 PF05746 DALR anticodon binding domain NAREPO1_02300 PF02091 Glycyl-tRNA synthetase alpha subunit NAREPO1_02310 PF01551 Peptidase family M23 NAREPO1_02320 PF02075 Crossover junction endodeoxyribonuclease RuvC NAREPO1_02330 PF01336 OB-fold nucleic acid binding domain NAREPO1_02330 PF00152 tRNA synthetases class II (D, K and N) NAREPO1_02330 PF02938 GAD domain NAREPO1_02340 PF00035 Double-stranded RNA binding motif NAREPO1_02340 PF14622 Ribonuclease-III-like NAREPO1_02350 PF10502 Signal peptidase, peptidase S26 NAREPO1_02360 PF03167 Uracil DNA glycosylase superfamily NAREPO1_02370 PF01025 GrpE NAREPO1_02380 PF01668 SmpB protein NAREPO1_02400 PF09334 tRNA synthetases class I (M) NAREPO1_02400 PF08264 Anticodon-binding domain of tRNA NAREPO1_02410 PF01926 50S ribosome-binding GTPase NAREPO1_02410 PF12631 MnmE helical domain NAREPO1_02410 PF10396 GTP-binding protein TrmE N-terminus NAREPO1_02420 PF14849 YidC periplasmic domain NAREPO1_02420 PF02096 60Kd inner membrane protein NAREPO1_02430 PF00825 Ribonuclease P NAREPO1_02440 PF00468 Ribosomal protein L34