locus-tag class description D5125_00010 PF08448 PAS fold D5125_00010 PF00990 Diguanylate cyclase, GGDEF domain D5125_00020 PF17092 Penicillin-binding protein OB-like domain D5125_00020 PF00905 Penicillin binding protein transpeptidase domain D5125_00020 PF00912 Transglycosylase D5125_00030 PF00512 His Kinase A (phospho-acceptor) domain D5125_00030 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_00030 PF01627 Hpt domain D5125_00030 PF00072 Response regulator receiver domain D5125_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_00030 PF00672 HAMP domain D5125_00035 PF00990 Diguanylate cyclase, GGDEF domain D5125_00035 PF00072 Response regulator receiver domain D5125_00045 PF00999 Sodium/hydrogen exchanger family D5125_00050 PF01207 Dihydrouridine synthase (Dus) D5125_00055 PF00293 NUDIX domain D5125_00070 PF04356 Protein of unknown function (DUF489) D5125_00075 PF00717 Peptidase S24-like D5125_00080 PF13438 Domain of unknown function (DUF4113) D5125_00080 PF00817 impB/mucB/samB family D5125_00080 PF11799 impB/mucB/samB family C-terminal domain D5125_00080 PF11798 IMS family HHH motif D5125_00090 PF12800 4Fe-4S binding domain D5125_00090 PF13247 4Fe-4S dicluster domain D5125_00095 PF01568 Molydopterin dinucleotide binding domain D5125_00095 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D5125_00095 PF00384 Molybdopterin oxidoreductase D5125_00105 PF00271 Helicase conserved C-terminal domain D5125_00105 PF12419 SNF2 Helicase protein D5125_00105 PF00176 SNF2 family N-terminal domain D5125_00115 PF02719 Polysaccharide biosynthesis protein D5125_00120 PF02397 Bacterial sugar transferase D5125_00125 PF01370 NAD dependent epimerase/dehydratase family D5125_00130 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_00130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D5125_00135 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D5125_00135 PF00361 Proton-conducting membrane transporter D5125_00135 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D5125_00135 PF13244 Domain of unknown function (DUF4040) D5125_00140 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5125_00145 PF00361 Proton-conducting membrane transporter D5125_00150 PF01899 Na+/H+ ion antiporter subunit D5125_00155 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D5125_00160 PF03334 Na+/H+ antiporter subunit D5125_00165 PF01625 Peptide methionine sulfoxide reductase D5125_00170 PF00034 Cytochrome c D5125_00180 PF00672 HAMP domain D5125_00180 PF00072 Response regulator receiver domain D5125_00180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_00180 PF01627 Hpt domain D5125_00180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_00180 PF00512 His Kinase A (phospho-acceptor) domain D5125_00210 PF00072 Response regulator receiver domain D5125_00215 PF00072 Response regulator receiver domain D5125_00215 PF01627 Hpt domain D5125_00215 PF00672 HAMP domain D5125_00215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_00215 PF00512 His Kinase A (phospho-acceptor) domain D5125_00215 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_00240 PF01496 V-type ATPase 116kDa subunit family D5125_00255 PF01991 ATP synthase (E/31 kDa) subunit D5125_00260 PF02874 ATP synthase alpha/beta family, beta-barrel domain D5125_00260 PF16886 ATPsynthase alpha/beta subunit N-term extension D5125_00260 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_00265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_00275 PF01258 Prokaryotic dksA/traR C4-type zinc finger D5125_00280 PF00749 tRNA synthetases class I (E and Q), catalytic domain D5125_00285 PF03588 Leucyl/phenylalanyl-tRNA protein transferase D5125_00290 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding D5125_00290 PF01628 HrcA protein C terminal domain D5125_00295 PF01513 ATP-NAD kinase D5125_00300 PF02463 RecF/RecN/SMC N terminal domain D5125_00315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D5125_00315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D5125_00315 PF00205 Thiamine pyrophosphate enzyme, central domain D5125_00320 PF00361 Proton-conducting membrane transporter D5125_00325 PF00361 Proton-conducting membrane transporter D5125_00325 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus D5125_00330 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D5125_00330 PF00361 Proton-conducting membrane transporter D5125_00335 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5125_00345 PF12838 4Fe-4S dicluster domain D5125_00350 PF00146 NADH dehydrogenase D5125_00355 PF00384 Molybdopterin oxidoreductase D5125_00355 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D5125_00355 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal D5125_00360 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D5125_00360 PF10531 SLBB domain D5125_00360 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D5125_00370 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D5125_00375 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D5125_00380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D5125_00385 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D5125_00390 PF01209 ubiE/COQ5 methyltransferase family D5125_00395 PF07885 Ion channel D5125_00395 PF00027 Cyclic nucleotide-binding domain D5125_00420 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D5125_00420 PF00361 Proton-conducting membrane transporter D5125_00420 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D5125_00420 PF13244 Domain of unknown function (DUF4040) D5125_00435 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D5125_00440 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5125_00455 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D5125_00465 PF01844 HNH endonuclease D5125_00490 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D5125_00490 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D5125_00490 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_00495 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D5125_00500 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D5125_00500 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D5125_00510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D5125_00515 PF00146 NADH dehydrogenase D5125_00520 PF00361 Proton-conducting membrane transporter D5125_00525 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5125_00530 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D5125_00545 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D5125_00550 PF01899 Na+/H+ ion antiporter subunit D5125_00560 PF01966 HD domain D5125_00565 PF03772 Competence protein D5125_00565 PF00753 Metallo-beta-lactamase superfamily D5125_00575 PF00155 Aminotransferase class I and II D5125_00580 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_00580 PF14602 Hexapeptide repeat of succinyl-transferase D5125_00580 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D5125_00600 PF07670 Nucleoside recognition D5125_00605 PF00877 NlpC/P60 family D5125_00610 PF18766 SWI2/SNF2 ATPase D5125_00610 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_00610 PF12008 Type I restriction and modification enzyme - subunit R C terminal D5125_00635 PF12161 HsdM N-terminal domain D5125_00635 PF02384 N-6 DNA Methylase D5125_00685 PF01578 Cytochrome C assembly protein D5125_00695 PF03100 CcmE D5125_00700 PF00970 Oxidoreductase FAD-binding domain D5125_00700 PF00175 Oxidoreductase NAD-binding domain D5125_00700 PF01383 CpcD/allophycocyanin linker domain D5125_00705 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) D5125_00715 PF00171 Aldehyde dehydrogenase family D5125_00725 PF00202 Aminotransferase class-III D5125_00730 PF07687 Peptidase dimerisation domain D5125_00730 PF01546 Peptidase family M20/M25/M40 D5125_00735 PF00484 Carbonic anhydrase D5125_00740 PF06832 Penicillin-Binding Protein C-terminus Family D5125_00740 PF00912 Transglycosylase D5125_00740 PF00905 Penicillin binding protein transpeptidase domain D5125_00745 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain D5125_00745 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain D5125_00745 PF00207 Alpha-2-macroglobulin family D5125_00745 PF07703 Alpha-2-macroglobulin bait region domain D5125_00745 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain D5125_00745 PF11974 Bacterial alpha-2-macroglobulin MG3 domain D5125_00745 PF01835 MG2 domain D5125_00745 PF17962 Bacterial macroglobulin domain 6 D5125_00750 PF00437 Type II/IV secretion system protein D5125_00755 PF00005 ABC transporter D5125_00755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5125_00765 PF00528 Binding-protein-dependent transport system inner membrane component D5125_00780 PF01709 Transcriptional regulator D5125_00785 PF02075 Crossover junction endodeoxyribonuclease RuvC D5125_00790 PF07499 RuvA, C-terminal domain D5125_00790 PF01330 RuvA N terminal domain D5125_00795 PF05496 Holliday junction DNA helicase RuvB P-loop domain D5125_00795 PF05491 RuvB C-terminal winged helix domain D5125_00795 PF17864 RuvB AAA lid domain D5125_00800 PF03061 Thioesterase superfamily D5125_00805 PF01618 MotA/TolQ/ExbB proton channel family D5125_00810 PF02472 Biopolymer transport protein ExbD/TolR D5125_00820 PF07676 WD40-like Beta Propeller Repeat D5125_00820 PF04052 TolB amino-terminal domain D5125_00825 PF00691 OmpA family D5125_00840 PF06508 Queuosine biosynthesis protein QueC D5125_00865 PF01555 DNA methylase D5125_00875 PF00849 RNA pseudouridylate synthase D5125_00875 PF01479 S4 domain D5125_00880 PF12111 Polyribonucleotide phosphorylase C terminal D5125_00880 PF10150 Ribonuclease E/G family D5125_00880 PF00575 S1 RNA binding domain D5125_00885 PF01451 Low molecular weight phosphotyrosine protein phosphatase D5125_00890 PF11808 Phosphate regulon sensor protein PhoR D5125_00890 PF00989 PAS fold D5125_00890 PF00512 His Kinase A (phospho-acceptor) domain D5125_00890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_00895 PF00486 Transcriptional regulatory protein, C terminal D5125_00895 PF00072 Response regulator receiver domain D5125_00905 PF00990 Diguanylate cyclase, GGDEF domain D5125_00905 PF00563 EAL domain D5125_00905 PF03707 Bacterial signalling protein N terminal repeat D5125_00915 PF05000 RNA polymerase Rpb1, domain 4 D5125_00915 PF04998 RNA polymerase Rpb1, domain 5 D5125_00915 PF00623 RNA polymerase Rpb1, domain 2 D5125_00915 PF04983 RNA polymerase Rpb1, domain 3 D5125_00915 PF04997 RNA polymerase Rpb1, domain 1 D5125_00920 PF04560 RNA polymerase Rpb2, domain 7 D5125_00920 PF00562 RNA polymerase Rpb2, domain 6 D5125_00920 PF10385 RNA polymerase beta subunit external 1 domain D5125_00920 PF04565 RNA polymerase Rpb2, domain 3 D5125_00920 PF04561 RNA polymerase Rpb2, domain 2 D5125_00920 PF04563 RNA polymerase beta subunit D5125_00925 PF16320 Ribosomal protein L7/L12 dimerisation domain D5125_00925 PF00542 Ribosomal protein L7/L12 C-terminal domain D5125_00930 PF00466 Ribosomal protein L10 D5125_00935 PF00687 Ribosomal protein L1p/L10e family D5125_00940 PF00298 Ribosomal protein L11, RNA binding domain D5125_00940 PF03946 Ribosomal protein L11, N-terminal domain D5125_00945 PF02357 Transcription termination factor nusG D5125_00945 PF00467 KOW motif D5125_00950 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D5125_00960 PF03144 Elongation factor Tu domain 2 D5125_00960 PF03143 Elongation factor Tu C-terminal domain D5125_00960 PF00009 Elongation factor Tu GTP binding domain D5125_00985 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D5125_00985 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D5125_00985 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D5125_00990 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D5125_00995 PF01195 Peptidyl-tRNA hydrolase D5125_01000 PF00814 Glycoprotease family D5125_01005 PF01165 Ribosomal protein S21 D5125_01015 PF13662 Toprim domain D5125_01015 PF08278 DNA primase DnaG DnaB-binding D5125_01015 PF01807 CHC2 zinc finger D5125_01015 PF08275 DNA primase catalytic core, N-terminal domain D5125_01015 PF10410 DnaB-helicase binding domain of primase D5125_01020 PF04539 Sigma-70 region 3 D5125_01020 PF04545 Sigma-70, region 4 D5125_01020 PF00140 Sigma-70 factor, region 1.2 D5125_01020 PF04542 Sigma-70 region 2 D5125_01020 PF04546 Sigma-70, non-essential region D5125_01020 PF03979 Sigma-70 factor, region 1.1 D5125_01030 PF17755 UvrA DNA-binding domain D5125_01030 PF17760 UvrA interaction domain D5125_01035 PF01219 Prokaryotic diacylglycerol kinase D5125_01040 PF01521 Iron-sulphur cluster biosynthesis D5125_01050 PF01118 Semialdehyde dehydrogenase, NAD binding domain D5125_01050 PF02774 Semialdehyde dehydrogenase, dimerisation domain D5125_01070 PF03976 Polyphosphate kinase 2 (PPK2) D5125_01075 PF03781 Sulfatase-modifying factor enzyme 1 D5125_01080 PF07885 Ion channel D5125_01080 PF00027 Cyclic nucleotide-binding domain D5125_01095 PF02646 RmuC family D5125_01105 PF01850 PIN domain D5125_01115 PF01850 PIN domain D5125_01150 PF04055 Radical SAM superfamily D5125_01150 PF00919 Uncharacterized protein family UPF0004 D5125_01160 PF00072 Response regulator receiver domain D5125_01170 PF00072 Response regulator receiver domain D5125_01170 PF01627 Hpt domain D5125_01170 PF00512 His Kinase A (phospho-acceptor) domain D5125_01170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_01170 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_01170 PF00672 HAMP domain D5125_01175 PF00072 Response regulator receiver domain D5125_01180 PF00072 Response regulator receiver domain D5125_01200 PF08264 Anticodon-binding domain of tRNA D5125_01200 PF00133 tRNA synthetases class I (I, L, M and V) D5125_01200 PF06827 Zinc finger found in FPG and IleRS D5125_01205 PF01252 Signal peptidase (SPase) II D5125_01210 PF00571 CBS domain D5125_01210 PF00478 IMP dehydrogenase / GMP reductase domain D5125_01215 PF00578 AhpC/TSA family D5125_01240 PF00155 Aminotransferase class I and II D5125_01245 PF00672 HAMP domain D5125_01245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_01250 PF12796 Ankyrin repeats (3 copies) D5125_01270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_01270 PF03466 LysR substrate binding domain D5125_01285 PF01230 HIT domain D5125_01290 PF02132 RecR protein D5125_01290 PF13662 Toprim domain D5125_01295 PF02575 YbaB/EbfC DNA-binding family D5125_01300 PF12170 DNA polymerase III tau subunit V interacting with alpha D5125_01300 PF12169 DNA polymerase III subunits gamma and tau domain III D5125_01300 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding D5125_01310 PF07075 Protein of unknown function (DUF1343) D5125_01320 PF03989 DNA gyrase C-terminal domain, beta-propeller D5125_01320 PF00521 DNA gyrase/topoisomerase IV, subunit A D5125_01325 PF03193 RsgA GTPase D5125_01330 PF00929 Exonuclease D5125_01335 PF00672 HAMP domain D5125_01335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_01340 PF00270 DEAD/DEAH box helicase D5125_01340 PF00271 Helicase conserved C-terminal domain D5125_01345 PF17757 UvrB interaction domain D5125_01345 PF03461 TRCF domain D5125_01345 PF00271 Helicase conserved C-terminal domain D5125_01345 PF02559 CarD-like/TRCF domain D5125_01345 PF00270 DEAD/DEAH box helicase D5125_01350 PF00271 Helicase conserved C-terminal domain D5125_01350 PF00176 SNF2 family N-terminal domain D5125_01350 PF12419 SNF2 Helicase protein D5125_01365 PF04362 Bacterial Fe(2+) trafficking D5125_01370 PF10576 Iron-sulfur binding domain of endonuclease III D5125_01370 PF14815 NUDIX domain D5125_01370 PF00633 Helix-hairpin-helix motif D5125_01370 PF00730 HhH-GPD superfamily base excision DNA repair protein D5125_01375 PF02685 Glucokinase D5125_01385 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D5125_01385 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D5125_01390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D5125_01400 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D5125_01405 PF03334 Na+/H+ antiporter subunit D5125_01415 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5125_01420 PF00361 Proton-conducting membrane transporter D5125_01425 PF00361 Proton-conducting membrane transporter D5125_01440 PF03600 Citrate transporter D5125_01445 PF00485 Phosphoribulokinase / Uridine kinase family D5125_01455 PF00459 Inositol monophosphatase family D5125_01460 PF14718 Soluble lytic murein transglycosylase L domain D5125_01460 PF01464 Transglycosylase SLT domain D5125_01470 PF00072 Response regulator receiver domain D5125_01470 PF00990 Diguanylate cyclase, GGDEF domain D5125_01475 PF00072 Response regulator receiver domain D5125_01485 PF01627 Hpt domain D5125_01485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_01485 PF01584 CheW-like domain D5125_01485 PF00072 Response regulator receiver domain D5125_01490 PF00809 Pterin binding enzyme D5125_01495 PF01434 Peptidase family M41 D5125_01495 PF06480 FtsH Extracellular D5125_01495 PF17862 AAA+ lid domain D5125_01495 PF00004 ATPase family associated with various cellular activities (AAA) D5125_01500 PF01728 FtsJ-like methyltransferase D5125_01505 PF01985 CRS1 / YhbY (CRM) domain D5125_01510 PF03449 Transcription elongation factor, N-terminal D5125_01510 PF01272 Transcription elongation factor, GreA/GreB, C-term D5125_01515 PF02142 MGS-like domain D5125_01515 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D5125_01515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5125_01520 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D5125_01520 PF00117 Glutamine amidotransferase class-I D5125_01525 PF09382 RQC domain D5125_01525 PF16124 RecQ zinc-binding D5125_01525 PF00570 HRDC domain D5125_01525 PF00270 DEAD/DEAH box helicase D5125_01525 PF00271 Helicase conserved C-terminal domain D5125_01535 PF01312 FlhB HrpN YscU SpaS Family D5125_01545 PF06339 Ectoine synthase D5125_01550 PF00202 Aminotransferase class-III D5125_01555 PF00583 Acetyltransferase (GNAT) family D5125_01560 PF01047 MarR family D5125_01565 PF13614 AAA domain D5125_01570 PF00072 Response regulator receiver domain D5125_01570 PF01339 CheB methylesterase D5125_01575 PF01627 Hpt domain D5125_01575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_01575 PF02895 Signal transducing histidine kinase, homodimeric domain D5125_01575 PF01584 CheW-like domain D5125_01575 PF07194 P2 response regulator binding domain D5125_01580 PF00072 Response regulator receiver domain D5125_01585 PF04542 Sigma-70 region 2 D5125_01585 PF04539 Sigma-70 region 3 D5125_01585 PF04545 Sigma-70, region 4 D5125_01590 PF10609 NUBPL iron-transfer P-loop NTPase D5125_01595 PF00448 SRP54-type protein, GTPase domain D5125_01600 PF00771 FHIPEP family D5125_01605 PF01312 FlhB HrpN YscU SpaS Family D5125_01610 PF05987 Bacterial protein of unknown function (DUF898) D5125_01615 PF01435 Peptidase family M48 D5125_01620 PF01311 Bacterial export proteins, family 1 D5125_01625 PF01313 Bacterial export proteins, family 3 D5125_01630 PF00813 FliP family D5125_01635 PF04347 Flagellar biosynthesis protein, FliO D5125_01640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D5125_01645 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D5125_01645 PF02154 Flagellar motor switch protein FliM D5125_01660 PF09190 DALR domain D5125_01660 PF01406 tRNA synthetases class I (C) catalytic domain D5125_01665 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D5125_01670 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D5125_01675 PF00149 Calcineurin-like phosphoesterase D5125_01680 PF05951 Bacterial protein of unknown function (DUF882) D5125_01685 PF03734 L,D-transpeptidase catalytic domain D5125_01685 PF01471 Putative peptidoglycan binding domain D5125_01690 PF04262 Glutamate-cysteine ligase D5125_01695 PF00768 D-alanyl-D-alanine carboxypeptidase D5125_01700 PF01594 AI-2E family transporter D5125_01710 PF03466 LysR substrate binding domain D5125_01710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_01715 PF00330 Aconitase family (aconitate hydratase) D5125_01715 PF11791 Aconitate B N-terminal domain D5125_01715 PF06434 Aconitate hydratase 2 N-terminus D5125_01730 PF00005 ABC transporter D5125_01740 PF12838 4Fe-4S dicluster domain D5125_01755 PF00034 Cytochrome c D5125_01765 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D5125_01765 PF18764 Nitrous oxide reductase propeller repeat D5125_01765 PF18793 Nitrous oxide reductase propeller repeat 2 D5125_01770 PF02630 SCO1/SenC D5125_01785 PF00034 Cytochrome c D5125_01790 PF00115 Cytochrome C and Quinol oxidase polypeptide I D5125_01795 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D5125_01815 PF01292 Prokaryotic cytochrome b561 D5125_01820 PF14824 Sirohaem biosynthesis protein central D5125_01820 PF10414 Sirohaem synthase dimerisation region D5125_01820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5125_01825 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_01835 PF17805 AsnC-like ligand binding domain D5125_01835 PF13404 AsnC-type helix-turn-helix domain D5125_01840 PF17805 AsnC-like ligand binding domain D5125_01845 PF17805 AsnC-like ligand binding domain D5125_01850 PF06463 Molybdenum Cofactor Synthesis C D5125_01850 PF04055 Radical SAM superfamily D5125_01865 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_01870 PF04445 Putative SAM-dependent methyltransferase D5125_01875 PF11818 C-terminal domain of tail specific protease (DUF3340) D5125_01875 PF17804 Tail specific protease N-terminal domain D5125_01875 PF03572 Peptidase family S41 D5125_01875 PF00595 PDZ domain D5125_01885 PF00085 Thioredoxin D5125_01895 PF02690 Na+/Pi-cotransporter D5125_01900 PF02080 TrkA-C domain D5125_01900 PF02254 TrkA-N domain D5125_01905 PF02386 Cation transport protein D5125_01915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_01915 PF02702 Osmosensitive K+ channel His kinase sensor domain D5125_01915 PF13493 Domain of unknown function (DUF4118) D5125_01915 PF00512 His Kinase A (phospho-acceptor) domain D5125_01920 PF00072 Response regulator receiver domain D5125_01920 PF00486 Transcriptional regulatory protein, C terminal D5125_01925 PF01053 Cys/Met metabolism PLP-dependent enzyme D5125_01945 PF00873 AcrB/AcrD/AcrF family D5125_01950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_01960 PF08241 Methyltransferase domain D5125_01965 PF00581 Rhodanese-like domain D5125_01970 PF01053 Cys/Met metabolism PLP-dependent enzyme D5125_01980 PF00266 Aminotransferase class-V D5125_01995 PF13247 4Fe-4S dicluster domain D5125_02000 PF00384 Molybdopterin oxidoreductase D5125_02000 PF01568 Molydopterin dinucleotide binding domain D5125_02010 PF08534 Redoxin D5125_02025 PF01925 Sulfite exporter TauE/SafE D5125_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_02060 PF00986 DNA gyrase B subunit, carboxyl terminus D5125_02060 PF00204 DNA gyrase B D5125_02060 PF01751 Toprim domain D5125_02070 PF02609 Exonuclease VII small subunit D5125_02075 PF00348 Polyprenyl synthetase D5125_02080 PF02649 Type I GTP cyclohydrolase folE2 D5125_02090 PF04608 Phosphatidylglycerophosphatase A D5125_02095 PF00586 AIR synthase related protein, N-terminal domain D5125_02095 PF02769 AIR synthase related protein, C-terminal domain D5125_02100 PF01029 NusB family D5125_02105 PF00885 6,7-dimethyl-8-ribityllumazine synthase D5125_02110 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D5125_02110 PF00925 GTP cyclohydrolase II D5125_02115 PF00677 Lumazine binding domain D5125_02125 PF01872 RibD C-terminal domain D5125_02125 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D5125_02135 PF03477 ATP cone domain D5125_02140 PF00464 Serine hydroxymethyltransferase D5125_02145 PF00072 Response regulator receiver domain D5125_02150 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_02150 PF00672 HAMP domain D5125_02150 PF00512 His Kinase A (phospho-acceptor) domain D5125_02150 PF00072 Response regulator receiver domain D5125_02150 PF01627 Hpt domain D5125_02150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_02155 PF01370 NAD dependent epimerase/dehydratase family D5125_02160 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D5125_02160 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D5125_02160 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D5125_02165 PF03796 DnaB-like helicase C terminal domain D5125_02165 PF00772 DnaB-like helicase N terminal domain D5125_02170 PF01281 Ribosomal protein L9, N-terminal domain D5125_02170 PF03948 Ribosomal protein L9, C-terminal domain D5125_02180 PF01084 Ribosomal protein S18 D5125_02185 PF01250 Ribosomal protein S6 D5125_02190 PF02321 Outer membrane efflux protein D5125_02195 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D5125_02195 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D5125_02195 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D5125_02195 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D5125_02200 PF01322 Cytochrome C' D5125_02215 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ D5125_02220 PF04221 RelB antitoxin D5125_02225 PF00589 Phage integrase family D5125_02235 PF13181 Tetratricopeptide repeat D5125_02240 PF01609 Transposase DDE domain D5125_02245 PF00665 Integrase core domain D5125_02265 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D5125_02270 PF01750 Hydrogenase maturation protease D5125_02275 PF00793 DAHP synthetase I family D5125_02280 PF04186 FxsA cytoplasmic membrane protein D5125_02285 PF03091 CutA1 divalent ion tolerance protein D5125_02290 PF02683 Cytochrome C biogenesis protein transmembrane region D5125_02290 PF11412 Disulphide bond corrector protein DsbC D5125_02295 PF02590 Predicted SPOUT methyltransferase D5125_02300 PF02545 Maf-like protein D5125_02305 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D5125_02305 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D5125_02310 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D5125_02310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D5125_02315 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5125_02315 PF01464 Transglycosylase SLT domain D5125_02320 PF00690 Cation transporter/ATPase, N-terminus D5125_02320 PF00689 Cation transporting ATPase, C-terminus D5125_02325 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_02335 PF06962 Putative rRNA methylase D5125_02360 PF03167 Uracil DNA glycosylase superfamily D5125_02365 PF08502 LeuA allosteric (dimerisation) domain D5125_02365 PF00682 HMGL-like D5125_02370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_02370 PF00512 His Kinase A (phospho-acceptor) domain D5125_02370 PF08446 PAS fold D5125_02370 PF00360 Phytochrome region D5125_02370 PF01590 GAF domain D5125_02380 PF00672 HAMP domain D5125_02380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_02395 PF04358 DsrC like protein D5125_02420 PF00085 Thioredoxin D5125_02425 PF01980 tRNA-methyltransferase O D5125_02425 PF18389 TrmO C-terminal domain D5125_02450 PF00873 AcrB/AcrD/AcrF family D5125_02465 PF02355 Protein export membrane protein D5125_02465 PF07549 SecD/SecF GG Motif D5125_02470 PF02355 Protein export membrane protein D5125_02470 PF13721 SecD export protein N-terminal TM region D5125_02470 PF07549 SecD/SecF GG Motif D5125_02475 PF02699 Preprotein translocase subunit D5125_02480 PF01702 Queuine tRNA-ribosyltransferase D5125_02485 PF02547 Queuosine biosynthesis protein D5125_02490 PF00990 Diguanylate cyclase, GGDEF domain D5125_02500 PF16363 GDP-mannose 4,6 dehydratase D5125_02520 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_02520 PF18113 Rubredoxin binding C-terminal domain D5125_02525 PF01636 Phosphotransferase enzyme family D5125_02530 PF01814 Hemerythrin HHE cation binding domain D5125_02550 PF13307 Helicase C-terminal domain D5125_02550 PF04851 Type III restriction enzyme, res subunit D5125_02565 PF00905 Penicillin binding protein transpeptidase domain D5125_02565 PF14814 Bifunctional transglycosylase second domain D5125_02565 PF00912 Transglycosylase D5125_02585 PF00293 NUDIX domain D5125_02585 PF13344 Haloacid dehalogenase-like hydrolase D5125_02595 PF01933 Uncharacterised protein family UPF0052 D5125_02605 PF00027 Cyclic nucleotide-binding domain D5125_02605 PF00325 Bacterial regulatory proteins, crp family D5125_02610 PF00115 Cytochrome C and Quinol oxidase polypeptide I D5125_02625 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_02625 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP D5125_02630 PF13746 4Fe-4S dicluster domain D5125_02630 PF12801 4Fe-4S binding domain D5125_02630 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D5125_02640 PF09820 Predicted AAA-ATPase D5125_02640 PF08011 PD-(D/E)XK nuclease superfamily D5125_02685 PF04851 Type III restriction enzyme, res subunit D5125_02685 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_02685 PF00271 Helicase conserved C-terminal domain D5125_02685 PF08463 EcoEI R protein C-terminal D5125_02690 PF00271 Helicase conserved C-terminal domain D5125_02690 PF08463 EcoEI R protein C-terminal D5125_02690 PF04851 Type III restriction enzyme, res subunit D5125_02690 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_02705 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D5125_02720 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_02740 PF01139 tRNA-splicing ligase RtcB D5125_02745 PF10127 RNA repair pathway DNA polymerase beta family D5125_02840 PF00436 Single-strand binding protein family D5125_02885 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) D5125_02940 PF01966 HD domain D5125_02940 PF00072 Response regulator receiver domain D5125_02960 PF00486 Transcriptional regulatory protein, C terminal D5125_02960 PF00072 Response regulator receiver domain D5125_02965 PF00512 His Kinase A (phospho-acceptor) domain D5125_02965 PF00672 HAMP domain D5125_02965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_02975 PF00990 Diguanylate cyclase, GGDEF domain D5125_02975 PF17151 Periplasmic sensor domain D5125_02995 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D5125_02995 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D5125_03015 PF00374 Nickel-dependent hydrogenase D5125_03030 PF01590 GAF domain D5125_03030 PF00990 Diguanylate cyclase, GGDEF domain D5125_03030 PF00360 Phytochrome region D5125_03030 PF00563 EAL domain D5125_03035 PF00072 Response regulator receiver domain D5125_03035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_03035 PF01627 Hpt domain D5125_03035 PF00989 PAS fold D5125_03035 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5125_03035 PF00512 His Kinase A (phospho-acceptor) domain D5125_03060 PF00384 Molybdopterin oxidoreductase D5125_03060 PF01568 Molydopterin dinucleotide binding domain D5125_03060 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D5125_03060 PF10518 TAT (twin-arginine translocation) pathway signal sequence D5125_03065 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D5125_03070 PF02152 Dihydroneopterin aldolase D5125_03075 PF02660 Glycerol-3-phosphate acyltransferase D5125_03080 PF01523 Putative modulator of DNA gyrase D5125_03085 PF01523 Putative modulator of DNA gyrase D5125_03090 PF00795 Carbon-nitrogen hydrolase D5125_03120 PF00579 tRNA synthetases class I (W and Y) D5125_03125 PF01551 Peptidase family M23 D5125_03125 PF04225 Opacity-associated protein A LysM-like domain D5125_03135 PF02028 BCCT, betaine/carnitine/choline family transporter D5125_03150 PF00175 Oxidoreductase NAD-binding domain D5125_03150 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B D5125_03160 PF01259 SAICAR synthetase D5125_03180 PF00437 Type II/IV secretion system protein D5125_03185 PF01168 Alanine racemase, N-terminal domain D5125_03190 PF03807 NADP oxidoreductase coenzyme F420-dependent D5125_03190 PF14748 Pyrroline-5-carboxylate reductase dimerisation D5125_03195 PF02325 YGGT family D5125_03200 PF02594 Uncharacterised ACR, YggU family COG1872 D5125_03210 PF00471 Ribosomal protein L33 D5125_03215 PF00830 Ribosomal L28 family D5125_03220 PF04002 RadC-like JAB domain D5125_03225 PF04127 DNA / pantothenate metabolism flavoprotein D5125_03225 PF02441 Flavoprotein D5125_03230 PF00692 dUTPase D5125_03235 PF00696 Amino acid kinase family D5125_03245 PF00156 Phosphoribosyl transferase domain D5125_03255 PF01209 ubiE/COQ5 methyltransferase family D5125_03270 PF03109 ABC1 family D5125_03280 PF11842 Domain of unknown function (DUF3362) D5125_03280 PF04055 Radical SAM superfamily D5125_03280 PF08497 Radical SAM N-terminal D5125_03285 PF00625 Guanylate kinase D5125_03290 PF03205 Molybdopterin guanine dinucleotide synthesis protein B D5125_03295 PF03264 NapC/NirT cytochrome c family, N-terminal region D5125_03300 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D5125_03305 PF12801 4Fe-4S binding domain D5125_03305 PF13237 4Fe-4S dicluster domain D5125_03310 PF12838 4Fe-4S dicluster domain D5125_03310 PF12800 4Fe-4S binding domain D5125_03320 PF00384 Molybdopterin oxidoreductase D5125_03320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D5125_03320 PF01568 Molydopterin dinucleotide binding domain D5125_03330 PF12838 4Fe-4S dicluster domain D5125_03330 PF13187 4Fe-4S dicluster domain D5125_03340 PF00563 EAL domain D5125_03340 PF00990 Diguanylate cyclase, GGDEF domain D5125_03340 PF03707 Bacterial signalling protein N terminal repeat D5125_03365 PF01925 Sulfite exporter TauE/SafE D5125_03375 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ D5125_03380 PF00902 Sec-independent protein translocase protein (TatC) D5125_03385 PF02416 mttA/Hcf106 family D5125_03390 PF02416 mttA/Hcf106 family D5125_03395 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D5125_03405 PF04002 RadC-like JAB domain D5125_03410 PF01434 Peptidase family M41 D5125_03410 PF00004 ATPase family associated with various cellular activities (AAA) D5125_03410 PF17862 AAA+ lid domain D5125_03430 PF07669 Eco57I restriction-modification methylase D5125_03465 PF00977 Histidine biosynthesis protein D5125_03470 PF00977 Histidine biosynthesis protein D5125_03475 PF00117 Glutamine amidotransferase class-I D5125_03480 PF00475 Imidazoleglycerol-phosphate dehydratase D5125_03485 PF02580 D-Tyr-tRNA(Tyr) deacylase D5125_03495 PF01145 SPFH domain / Band 7 family D5125_03495 PF16200 C-terminal region of band_7 D5125_03515 PF01649 Ribosomal protein S20 D5125_03520 PF02424 ApbE family D5125_03525 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D5125_03525 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D5125_03530 PF00593 TonB dependent receptor D5125_03530 PF07715 TonB-dependent Receptor Plug Domain D5125_03540 PF01627 Hpt domain D5125_03540 PF00072 Response regulator receiver domain D5125_03540 PF00512 His Kinase A (phospho-acceptor) domain D5125_03540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_03545 PF02508 Rnf-Nqr subunit, membrane protein D5125_03550 PF04205 FMN-binding domain D5125_03555 PF03116 NQR2, RnfD, RnfE family D5125_03560 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D5125_03560 PF13375 RnfC Barrel sandwich hybrid domain D5125_03560 PF12838 4Fe-4S dicluster domain D5125_03560 PF10531 SLBB domain D5125_03565 PF04060 Putative Fe-S cluster D5125_03570 PF02508 Rnf-Nqr subunit, membrane protein D5125_03585 PF18693 TRAM domain D5125_03585 PF00919 Uncharacterized protein family UPF0004 D5125_03585 PF04055 Radical SAM superfamily D5125_03610 PF00571 CBS domain D5125_03610 PF00005 ABC transporter D5125_03615 PF00528 Binding-protein-dependent transport system inner membrane component D5125_03620 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D5125_03650 PF13193 AMP-binding enzyme C-terminal domain D5125_03650 PF00501 AMP-binding enzyme D5125_03675 PF00483 Nucleotidyl transferase D5125_03680 PF16363 GDP-mannose 4,6 dehydratase D5125_03685 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D5125_03695 PF16363 GDP-mannose 4,6 dehydratase D5125_03715 PF04055 Radical SAM superfamily D5125_03715 PF13186 Iron-sulfur cluster-binding domain D5125_03720 PF06463 Molybdenum Cofactor Synthesis C D5125_03720 PF04055 Radical SAM superfamily D5125_03725 PF06463 Molybdenum Cofactor Synthesis C D5125_03725 PF04055 Radical SAM superfamily D5125_03730 PF04055 Radical SAM superfamily D5125_03730 PF02310 B12 binding domain D5125_03740 PF05050 Methyltransferase FkbM domain D5125_03790 PF03275 UDP-galactopyranose mutase D5125_03800 PF16363 GDP-mannose 4,6 dehydratase D5125_03805 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D5125_03805 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D5125_03805 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D5125_03840 PF08241 Methyltransferase domain D5125_03845 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5125_03850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D5125_03850 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D5125_03855 PF00535 Glycosyl transferase family 2 D5125_03860 PF01609 Transposase DDE domain D5125_03890 PF02348 Cytidylyltransferase D5125_03895 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5125_03905 PF08666 SAF domain D5125_03905 PF03102 NeuB family D5125_03910 PF00202 Aminotransferase class-III D5125_03955 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_03960 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D5125_03960 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D5125_04030 PF00270 DEAD/DEAH box helicase D5125_04030 PF13749 Putative ATP-dependent DNA helicase recG C-terminal D5125_04030 PF17191 RecG wedge domain D5125_04035 PF05685 Putative restriction endonuclease D5125_04040 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D5125_04040 PF00753 Metallo-beta-lactamase superfamily D5125_04040 PF10996 Beta-Casp domain D5125_04045 PF16363 GDP-mannose 4,6 dehydratase D5125_04050 PF01370 NAD dependent epimerase/dehydratase family D5125_04055 PF01050 Mannose-6-phosphate isomerase D5125_04055 PF00483 Nucleotidyl transferase D5125_04070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D5125_04070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D5125_04070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D5125_04070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D5125_04075 PF08666 SAF domain D5125_04075 PF03102 NeuB family D5125_04085 PF00072 Response regulator receiver domain D5125_04085 PF00158 Sigma-54 interaction domain D5125_04085 PF02954 Bacterial regulatory protein, Fis family D5125_04095 PF00072 Response regulator receiver domain D5125_04095 PF00486 Transcriptional regulatory protein, C terminal D5125_04110 PF09820 Predicted AAA-ATPase D5125_04110 PF08011 PD-(D/E)XK nuclease superfamily D5125_04115 PF01794 Ferric reductase like transmembrane component D5125_04130 PF01475 Ferric uptake regulator family D5125_04135 PF00829 Ribosomal prokaryotic L21 protein D5125_04140 PF01016 Ribosomal L27 protein D5125_04145 PF01926 50S ribosome-binding GTPase D5125_04145 PF01018 GTP1/OBG D5125_04150 PF01472 PUA domain D5125_04150 PF00696 Amino acid kinase family D5125_04155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_04155 PF00512 His Kinase A (phospho-acceptor) domain D5125_04155 PF18415 Histidine kinase receptor ArcB trans-membrane domain D5125_04155 PF00989 PAS fold D5125_04155 PF00072 Response regulator receiver domain D5125_04155 PF01627 Hpt domain D5125_04170 PF00990 Diguanylate cyclase, GGDEF domain D5125_04170 PF00563 EAL domain D5125_04170 PF03707 Bacterial signalling protein N terminal repeat D5125_04180 PF02219 Methylenetetrahydrofolate reductase D5125_04185 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain D5125_04185 PF05221 S-adenosyl-L-homocysteine hydrolase D5125_04190 PF02772 S-adenosylmethionine synthetase, central domain D5125_04190 PF00438 S-adenosylmethionine synthetase, N-terminal domain D5125_04190 PF02773 S-adenosylmethionine synthetase, C-terminal domain D5125_04205 PF00202 Aminotransferase class-III D5125_04210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D5125_04210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D5125_04220 PF00291 Pyridoxal-phosphate dependent enzyme D5125_04225 PF00491 Arginase family D5125_04230 PF01590 GAF domain D5125_04230 PF00563 EAL domain D5125_04230 PF00360 Phytochrome region D5125_04230 PF00990 Diguanylate cyclase, GGDEF domain D5125_04240 PF10576 Iron-sulfur binding domain of endonuclease III D5125_04240 PF00633 Helix-hairpin-helix motif D5125_04240 PF00730 HhH-GPD superfamily base excision DNA repair protein D5125_04245 PF08264 Anticodon-binding domain of tRNA D5125_04245 PF00133 tRNA synthetases class I (I, L, M and V) D5125_04245 PF10458 Valyl tRNA synthetase tRNA binding arm D5125_04250 PF03544 Gram-negative bacterial TonB protein C-terminal D5125_04260 PF02472 Biopolymer transport protein ExbD/TolR D5125_04265 PF01618 MotA/TolQ/ExbB proton channel family D5125_04270 PF01618 MotA/TolQ/ExbB proton channel family D5125_04275 PF01026 TatD related DNase D5125_04300 PF00263 Bacterial type II and III secretion system protein D5125_04300 PF11741 AMIN domain D5125_04300 PF07660 Secretin and TonB N terminus short domain D5125_04300 PF03958 Bacterial type II/III secretion system short domain D5125_04325 PF17092 Penicillin-binding protein OB-like domain D5125_04325 PF00912 Transglycosylase D5125_04325 PF00905 Penicillin binding protein transpeptidase domain D5125_04330 PF09820 Predicted AAA-ATPase D5125_04330 PF08011 PD-(D/E)XK nuclease superfamily D5125_04335 PF02254 TrkA-N domain D5125_04335 PF00999 Sodium/hydrogen exchanger family D5125_04340 PF00571 CBS domain D5125_04340 PF01595 Cyclin M transmembrane N-terminal domain D5125_04360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_04360 PF00672 HAMP domain D5125_04360 PF02743 Cache domain D5125_04365 PF13614 AAA domain D5125_04375 PF00072 Response regulator receiver domain D5125_04385 PF07194 P2 response regulator binding domain D5125_04385 PF01627 Hpt domain D5125_04385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_04385 PF02895 Signal transducing histidine kinase, homodimeric domain D5125_04385 PF01584 CheW-like domain D5125_04390 PF02743 Cache domain D5125_04390 PF00672 HAMP domain D5125_04390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_04395 PF01584 CheW-like domain D5125_04400 PF16591 Helical bimodular sensor domain D5125_04400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_04400 PF00672 HAMP domain D5125_04405 PF01584 CheW-like domain D5125_04410 PF01739 CheR methyltransferase, SAM binding domain D5125_04410 PF03705 CheR methyltransferase, all-alpha domain D5125_04415 PF03975 CheD chemotactic sensory transduction D5125_04420 PF00072 Response regulator receiver domain D5125_04420 PF01339 CheB methylesterase D5125_04425 PF02142 MGS-like domain D5125_04425 PF01808 AICARFT/IMPCHase bienzyme D5125_04430 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D5125_04430 PF02843 Phosphoribosylglycinamide synthetase, C domain D5125_04430 PF02844 Phosphoribosylglycinamide synthetase, N domain D5125_04435 PF17283 SprT-like zinc ribbon domain D5125_04435 PF10263 SprT-like family D5125_04445 PF13609 Gram-negative porin D5125_04450 PF02696 Uncharacterized ACR, YdiU/UPF0061 family D5125_04455 PF00881 Nitroreductase family D5125_04465 PF07295 Zinc-ribbon containing domain D5125_04470 PF00437 Type II/IV secretion system protein D5125_04475 PF00343 Carbohydrate phosphorylase D5125_04480 PF00171 Aldehyde dehydrogenase family D5125_04485 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system D5125_04495 PF01467 Cytidylyltransferase-like D5125_04505 PF01812 5-formyltetrahydrofolate cyclo-ligase family D5125_04515 PF05164 Cell division protein ZapA D5125_04525 PF03695 Uncharacterised protein family (UPF0149) D5125_04530 PF05195 Aminopeptidase P, N-terminal domain D5125_04530 PF00557 Metallopeptidase family M24 D5125_04535 PF01494 FAD binding domain D5125_04540 PF01494 FAD binding domain D5125_04545 PF17863 AAA lid domain D5125_04545 PF07726 ATPase family associated with various cellular activities (AAA) D5125_04555 PF08011 PD-(D/E)XK nuclease superfamily D5125_04555 PF09820 Predicted AAA-ATPase D5125_04590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_04590 PF00512 His Kinase A (phospho-acceptor) domain D5125_04590 PF00072 Response regulator receiver domain D5125_04590 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5125_04595 PF00072 Response regulator receiver domain D5125_04595 PF00486 Transcriptional regulatory protein, C terminal D5125_04615 PF08011 PD-(D/E)XK nuclease superfamily D5125_04615 PF09820 Predicted AAA-ATPase D5125_04620 PF13181 Tetratricopeptide repeat D5125_04645 PF00486 Transcriptional regulatory protein, C terminal D5125_04645 PF00072 Response regulator receiver domain D5125_04650 PF00512 His Kinase A (phospho-acceptor) domain D5125_04650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_04660 PF09820 Predicted AAA-ATPase D5125_04660 PF08011 PD-(D/E)XK nuclease superfamily D5125_04665 PF00175 Oxidoreductase NAD-binding domain D5125_04665 PF00111 2Fe-2S iron-sulfur cluster binding domain D5125_04665 PF00970 Oxidoreductase FAD-binding domain D5125_04675 PF00034 Cytochrome c D5125_04680 PF01323 DSBA-like thioredoxin domain D5125_04680 PF00085 Thioredoxin D5125_04690 PF00990 Diguanylate cyclase, GGDEF domain D5125_04695 PF00580 UvrD/REP helicase N-terminal domain D5125_04695 PF13361 UvrD-like helicase C-terminal domain D5125_04710 PF00313 'Cold-shock' DNA-binding domain D5125_04720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D5125_04755 PF03968 OstA-like protein D5125_04760 PF12399 Branched-chain amino acid ATP-binding cassette transporter D5125_04760 PF00005 ABC transporter D5125_04765 PF00309 Sigma-54 factor, Activator interacting domain (AID) D5125_04765 PF04963 Sigma-54 factor, core binding domain D5125_04765 PF04552 Sigma-54, DNA binding domain D5125_04770 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D5125_04775 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D5125_04785 PF03668 P-loop ATPase protein family D5125_04790 PF03610 PTS system fructose IIA component D5125_04795 PF00381 PTS HPr component phosphorylation site D5125_04820 PF00005 ABC transporter D5125_04835 PF02391 MoaE protein D5125_04840 PF03144 Elongation factor Tu domain 2 D5125_04840 PF00009 Elongation factor Tu GTP binding domain D5125_04840 PF14492 Elongation Factor G, domain II D5125_04840 PF00679 Elongation factor G C-terminus D5125_04840 PF03764 Elongation factor G, domain IV D5125_04850 PF00672 HAMP domain D5125_04850 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_04850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_04850 PF00072 Response regulator receiver domain D5125_04850 PF01627 Hpt domain D5125_04850 PF00512 His Kinase A (phospho-acceptor) domain D5125_04855 PF00072 Response regulator receiver domain D5125_04860 PF00072 Response regulator receiver domain D5125_04860 PF01627 Hpt domain D5125_04860 PF00512 His Kinase A (phospho-acceptor) domain D5125_04860 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_04860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_04860 PF00672 HAMP domain D5125_04870 PF05685 Putative restriction endonuclease D5125_04875 PF05685 Putative restriction endonuclease D5125_04880 PF03372 Endonuclease/Exonuclease/phosphatase family D5125_04885 PF00709 Adenylosuccinate synthetase D5125_04890 PF13393 Histidyl-tRNA synthetase D5125_04900 PF01145 SPFH domain / Band 7 family D5125_04905 PF01145 SPFH domain / Band 7 family D5125_04905 PF12221 Bacterial membrane protein N terminal D5125_04910 PF01926 50S ribosome-binding GTPase D5125_04910 PF13167 GTP-binding GTPase N-terminal D5125_04910 PF16360 GTP-binding GTPase Middle Region D5125_04915 PF17209 Hfq protein D5125_04925 PF01510 N-acetylmuramoyl-L-alanine amidase D5125_04940 PF07556 Protein of unknown function (DUF1538) D5125_04945 PF07556 Protein of unknown function (DUF1538) D5125_04955 PF03641 Possible lysine decarboxylase D5125_04960 PF01676 Metalloenzyme superfamily D5125_04960 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D5125_04995 PF07722 Peptidase C26 D5125_05010 PF01594 AI-2E family transporter D5125_05015 PF01066 CDP-alcohol phosphatidyltransferase D5125_05025 PF02769 AIR synthase related protein, C-terminal domain D5125_05025 PF00586 AIR synthase related protein, N-terminal domain D5125_05030 PF00551 Formyl transferase D5125_05035 PF09308 LuxQ, periplasmic D5125_05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_05035 PF00512 His Kinase A (phospho-acceptor) domain D5125_05035 PF00072 Response regulator receiver domain D5125_05045 PF00692 dUTPase D5125_05055 PF00990 Diguanylate cyclase, GGDEF domain D5125_05055 PF00563 EAL domain D5125_05055 PF03707 Bacterial signalling protein N terminal repeat D5125_05060 PF00990 Diguanylate cyclase, GGDEF domain D5125_05060 PF00072 Response regulator receiver domain D5125_05065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_05065 PF00672 HAMP domain D5125_05090 PF13439 Glycosyltransferase Family 4 D5125_05090 PF00534 Glycosyl transferases group 1 D5125_05110 PF00535 Glycosyl transferase family 2 D5125_05120 PF00664 ABC transporter transmembrane region D5125_05120 PF00005 ABC transporter D5125_05140 PF01926 50S ribosome-binding GTPase D5125_05140 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D5125_05145 PF13360 PQQ-like domain D5125_05150 PF09976 Tetratricopeptide repeat-like domain D5125_05155 PF03129 Anticodon binding domain D5125_05155 PF13393 Histidyl-tRNA synthetase D5125_05170 PF04055 Radical SAM superfamily D5125_05175 PF02824 TGS domain D5125_05175 PF04607 Region found in RelA / SpoT proteins D5125_05175 PF13291 ACT domain D5125_05185 PF04384 Iron-sulphur cluster assembly D5125_05190 PF00111 2Fe-2S iron-sulfur cluster binding domain D5125_05195 PF00012 Hsp70 protein D5125_05200 PF00226 DnaJ domain D5125_05200 PF07743 HSCB C-terminal oligomerisation domain D5125_05205 PF01521 Iron-sulphur cluster biosynthesis D5125_05210 PF01592 NifU-like N terminal domain D5125_05215 PF00266 Aminotransferase class-V D5125_05220 PF02082 Transcriptional regulator D5125_05225 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_05230 PF00588 SpoU rRNA Methylase family D5125_05235 PF00459 Inositol monophosphatase family D5125_05250 PF02445 Quinolinate synthetase A protein D5125_05255 PF00849 RNA pseudouridylate synthase D5125_05260 PF03350 Uncharacterized protein family, UPF0114 D5125_05270 PF00563 EAL domain D5125_05270 PF03707 Bacterial signalling protein N terminal repeat D5125_05270 PF00990 Diguanylate cyclase, GGDEF domain D5125_05275 PF08447 PAS fold D5125_05275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_05280 PF01471 Putative peptidoglycan binding domain D5125_05280 PF03734 L,D-transpeptidase catalytic domain D5125_05315 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D5125_05320 PF09312 SurA N-terminal domain D5125_05320 PF00639 PPIC-type PPIASE domain D5125_05325 PF03968 OstA-like protein D5125_05325 PF04453 LPS transport system D D5125_05330 PF00072 Response regulator receiver domain D5125_05335 PF00072 Response regulator receiver domain D5125_05345 PF03960 ArsC family D5125_05350 PF03358 NADPH-dependent FMN reductase D5125_05360 PF00308 Bacterial dnaA protein D5125_05365 PF01381 Helix-turn-helix D5125_05370 PF05973 Phage derived protein Gp49-like (DUF891) D5125_05385 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) D5125_05405 PF13181 Tetratricopeptide repeat D5125_05420 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) D5125_05440 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_05500 PF13181 Tetratricopeptide repeat D5125_05525 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D5125_05525 PF00413 Matrixin D5125_05525 PF08548 Peptidase M10 serralysin C terminal D5125_05535 PF00005 ABC transporter D5125_05535 PF14524 Wzt C-terminal domain D5125_05605 PF00535 Glycosyl transferase family 2 D5125_05620 PF00535 Glycosyl transferase family 2 D5125_05625 PF00664 ABC transporter transmembrane region D5125_05625 PF00005 ABC transporter D5125_05630 PF00529 HlyD membrane-fusion protein of T1SS D5125_05630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_05645 PF01202 Shikimate kinase D5125_05650 PF10518 TAT (twin-arginine translocation) pathway signal sequence D5125_05650 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_05650 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding D5125_05660 PF03264 NapC/NirT cytochrome c family, N-terminal region D5125_05665 PF00226 DnaJ domain D5125_05665 PF05099 Tellurite resistance protein TerB D5125_05670 PF00593 TonB dependent receptor D5125_05670 PF07715 TonB-dependent Receptor Plug Domain D5125_05675 PF01497 Periplasmic binding protein D5125_05685 PF00834 Ribulose-phosphate 3 epimerase family D5125_05695 PF13419 Haloacid dehalogenase-like hydrolase D5125_05700 PF00069 Protein kinase domain D5125_05700 PF03793 PASTA domain D5125_05710 PF01171 PP-loop family D5125_05720 PF01926 50S ribosome-binding GTPase D5125_05725 PF02630 SCO1/SenC D5125_05745 PF02602 Uroporphyrinogen-III synthase HemD D5125_05750 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D5125_05750 PF03900 Porphobilinogen deaminase, C-terminal domain D5125_05755 PF04397 LytTr DNA-binding domain D5125_05755 PF00072 Response regulator receiver domain D5125_05760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_05760 PF06580 Histidine kinase D5125_05765 PF14698 Argininosuccinate lyase C-terminal D5125_05765 PF00206 Lyase D5125_05775 PF01295 Adenylate cyclase, class-I D5125_05775 PF12633 Adenylate cyclase NT domain D5125_05780 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D5125_05780 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D5125_05795 PF01678 Diaminopimelate epimerase D5125_05800 PF04340 Protein of unknown function, DUF484 D5125_05805 PF02899 Phage integrase, N-terminal SAM-like domain D5125_05805 PF00589 Phage integrase family D5125_05810 PF00149 Calcineurin-like phosphoesterase D5125_05815 PF04379 ApaG domain D5125_05825 PF00072 Response regulator receiver domain D5125_05830 PF00990 Diguanylate cyclase, GGDEF domain D5125_05830 PF00072 Response regulator receiver domain D5125_05835 PF13466 STAS domain D5125_05845 PF00158 Sigma-54 interaction domain D5125_05845 PF02954 Bacterial regulatory protein, Fis family D5125_05845 PF01590 GAF domain D5125_05855 PF07715 TonB-dependent Receptor Plug Domain D5125_05855 PF00593 TonB dependent receptor D5125_05865 PF00593 TonB dependent receptor D5125_05865 PF07715 TonB-dependent Receptor Plug Domain D5125_05870 PF00535 Glycosyl transferase family 2 D5125_05880 PF01687 Riboflavin kinase D5125_05880 PF06574 FAD synthetase D5125_05885 PF02806 Alpha amylase, C-terminal all-beta domain D5125_05885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D5125_05885 PF00128 Alpha amylase, catalytic domain D5125_05895 PF00072 Response regulator receiver domain D5125_05895 PF00989 PAS fold D5125_05895 PF01627 Hpt domain D5125_05895 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5125_05895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_05895 PF00512 His Kinase A (phospho-acceptor) domain D5125_05900 PF00072 Response regulator receiver domain D5125_05900 PF00486 Transcriptional regulatory protein, C terminal D5125_05905 PF00348 Polyprenyl synthetase D5125_05915 PF01402 Ribbon-helix-helix protein, copG family D5125_05920 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D5125_05925 PF01351 Ribonuclease HII D5125_05930 PF02684 Lipid-A-disaccharide synthetase D5125_05960 PF01609 Transposase DDE domain D5125_05970 PF01555 DNA methylase D5125_05990 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D5125_05990 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_05995 PF07977 FabA-like domain D5125_06000 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D5125_06000 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_06010 PF01103 Surface antigen D5125_06010 PF07244 Surface antigen variable number repeat D5125_06015 PF17820 PDZ domain D5125_06015 PF02163 Peptidase family M50 D5125_06025 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D5125_06025 PF13288 DXP reductoisomerase C-terminal domain D5125_06025 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D5125_06035 PF01255 Putative undecaprenyl diphosphate synthase D5125_06040 PF01765 Ribosome recycling factor D5125_06045 PF00696 Amino acid kinase family D5125_06050 PF00889 Elongation factor TS D5125_06055 PF00318 Ribosomal protein S2 D5125_06060 PF00557 Metallopeptidase family M24 D5125_06065 PF01842 ACT domain D5125_06065 PF08335 GlnD PII-uridylyltransferase D5125_06065 PF01966 HD domain D5125_06065 PF01909 Nucleotidyltransferase domain D5125_06075 PF05191 Adenylate kinase, active site lid D5125_06080 PF01066 CDP-alcohol phosphatidyltransferase D5125_06085 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D5125_06085 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D5125_06090 PF10369 Small subunit of acetolactate synthase D5125_06095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D5125_06095 PF00205 Thiamine pyrophosphate enzyme, central domain D5125_06095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D5125_06100 PF01926 50S ribosome-binding GTPase D5125_06100 PF06071 Protein of unknown function (DUF933) D5125_06105 PF13466 STAS domain D5125_06115 PF00672 HAMP domain D5125_06115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_06115 PF17200 Single Cache domain 2 D5125_06120 PF01339 CheB methylesterase D5125_06120 PF00072 Response regulator receiver domain D5125_06125 PF03975 CheD chemotactic sensory transduction D5125_06130 PF03705 CheR methyltransferase, all-alpha domain D5125_06130 PF01739 CheR methyltransferase, SAM binding domain D5125_06145 PF13614 AAA domain D5125_06150 PF01584 CheW-like domain D5125_06155 PF00672 HAMP domain D5125_06155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_06155 PF02203 Tar ligand binding domain homologue D5125_06160 PF01584 CheW-like domain D5125_06165 PF02895 Signal transducing histidine kinase, homodimeric domain D5125_06165 PF01584 CheW-like domain D5125_06165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_06165 PF01627 Hpt domain D5125_06165 PF09078 CheY binding D5125_06170 PF00072 Response regulator receiver domain D5125_06175 PF00271 Helicase conserved C-terminal domain D5125_06175 PF00270 DEAD/DEAH box helicase D5125_06180 PF08411 Exonuclease C-terminal D5125_06180 PF00929 Exonuclease D5125_06195 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) D5125_06200 PF01867 CRISPR associated protein Cas1 D5125_06215 PF08798 CRISPR associated protein D5125_06225 PF09704 CRISPR-associated protein (Cas_Cas5) D5125_06230 PF09344 CT1975-like protein D5125_06245 PF00270 DEAD/DEAH box helicase D5125_06245 PF18019 HD domain D5125_06245 PF00271 Helicase conserved C-terminal domain D5125_06250 PF03937 Flavinator of succinate dehydrogenase D5125_06255 PF13085 2Fe-2S iron-sulfur cluster binding domain D5125_06260 PF00890 FAD binding domain D5125_06260 PF02910 Fumarate reductase flavoprotein C-term D5125_06275 PF03949 Malic enzyme, NAD binding domain D5125_06275 PF00390 Malic enzyme, N-terminal domain D5125_06275 PF01515 Phosphate acetyl/butaryl transferase D5125_06285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5125_06290 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D5125_06295 PF03480 Bacterial extracellular solute-binding protein, family 7 D5125_06300 PF00570 HRDC domain D5125_06300 PF01612 3'-5' exonuclease D5125_06310 PF01225 Mur ligase family, catalytic domain D5125_06310 PF08245 Mur ligase middle domain D5125_06310 PF02875 Mur ligase family, glutamate ligase domain D5125_06315 PF02441 Flavoprotein D5125_06320 PF09335 SNARE associated Golgi protein D5125_06325 PF00072 Response regulator receiver domain D5125_06330 PF00202 Aminotransferase class-III D5125_06335 PF02581 Thiamine monophosphate synthase D5125_06340 PF08543 Phosphomethylpyrimidine kinase D5125_06360 PF09345 Domain of unknown function (DUF1987) D5125_06365 PF00990 Diguanylate cyclase, GGDEF domain D5125_06365 PF08448 PAS fold D5125_06370 PF00512 His Kinase A (phospho-acceptor) domain D5125_06370 PF01627 Hpt domain D5125_06370 PF00072 Response regulator receiver domain D5125_06370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_06380 PF02401 LytB protein D5125_06390 PF00563 EAL domain D5125_06390 PF00990 Diguanylate cyclase, GGDEF domain D5125_06390 PF08448 PAS fold D5125_06395 PF00563 EAL domain D5125_06395 PF03707 Bacterial signalling protein N terminal repeat D5125_06395 PF00990 Diguanylate cyclase, GGDEF domain D5125_06400 PF03129 Anticodon binding domain D5125_06400 PF04073 Aminoacyl-tRNA editing domain D5125_06400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D5125_06405 PF07977 FabA-like domain D5125_06415 PF02954 Bacterial regulatory protein, Fis family D5125_06420 PF01207 Dihydrouridine synthase (Dus) D5125_06435 PF02785 Biotin carboxylase C-terminal domain D5125_06435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5125_06435 PF00289 Biotin carboxylase, N-terminal domain D5125_06440 PF00364 Biotin-requiring enzyme D5125_06445 PF01220 Dehydroquinase class II D5125_06460 PF01636 Phosphotransferase enzyme family D5125_06470 PF00365 Phosphofructokinase D5125_06475 PF03030 Inorganic H+ pyrophosphatase D5125_06485 PF13335 Magnesium chelatase, subunit ChlI C-terminal D5125_06485 PF01078 Magnesium chelatase, subunit ChlI D5125_06490 PF04380 Membrane fusogenic activity D5125_06495 PF00543 Nitrogen regulatory protein P-II D5125_06500 PF00909 Ammonium Transporter Family D5125_06510 PF09086 Domain of unknown function (DUF1924) D5125_06520 PF02607 B12 binding domain D5125_06520 PF00809 Pterin binding enzyme D5125_06520 PF02965 Vitamin B12 dependent methionine synthase, activation domain D5125_06520 PF02574 Homocysteine S-methyltransferase D5125_06520 PF02310 B12 binding domain D5125_06535 PF00027 Cyclic nucleotide-binding domain D5125_06535 PF00005 ABC transporter D5125_06550 PF01841 Transglutaminase-like superfamily D5125_06550 PF11992 Domain of unknown function (DUF3488) D5125_06550 PF13559 Domain of unknown function (DUF4129) D5125_06570 PF13180 PDZ domain D5125_06570 PF00595 PDZ domain D5125_06595 PF08402 TOBE domain D5125_06595 PF00005 ABC transporter D5125_06605 PF01761 3-dehydroquinate synthase D5125_06615 PF00310 Glutamine amidotransferases class-II D5125_06615 PF01645 Conserved region in glutamate synthase D5125_06615 PF01493 GXGXG motif D5125_06615 PF04898 Glutamate synthase central domain D5125_06620 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_06620 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D5125_06640 PF13784 Fic/DOC family N-terminal D5125_06640 PF02661 Fic/DOC family D5125_06650 PF12161 HsdM N-terminal domain D5125_06650 PF02384 N-6 DNA Methylase D5125_06675 PF03707 Bacterial signalling protein N terminal repeat D5125_06675 PF00990 Diguanylate cyclase, GGDEF domain D5125_06675 PF00563 EAL domain D5125_06680 PF00512 His Kinase A (phospho-acceptor) domain D5125_06680 PF08446 PAS fold D5125_06680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_06680 PF01590 GAF domain D5125_06680 PF00360 Phytochrome region D5125_06720 PF03969 AFG1-like ATPase D5125_06725 PF04551 GcpE protein D5125_06735 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5125_06740 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D5125_06740 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D5125_06745 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D5125_06750 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D5125_06755 PF00374 Nickel-dependent hydrogenase D5125_06765 PF00990 Diguanylate cyclase, GGDEF domain D5125_06770 PF01208 Uroporphyrinogen decarboxylase (URO-D) D5125_06800 PF00255 Glutathione peroxidase D5125_06815 PF13411 MerR HTH family regulatory protein D5125_06820 PF00875 DNA photolyase D5125_06820 PF03441 FAD binding domain of DNA photolyase D5125_06825 PF16868 NMT1-like family D5125_06830 PF17788 HypF Kae1-like domain D5125_06830 PF00708 Acylphosphatase D5125_06830 PF07503 HypF finger D5125_06830 PF01300 Telomere recombination D5125_06845 PF01040 UbiA prenyltransferase family D5125_06850 PF04345 Chorismate lyase D5125_06855 PF17191 RecG wedge domain D5125_06855 PF00270 DEAD/DEAH box helicase D5125_06855 PF00271 Helicase conserved C-terminal domain D5125_06860 PF01894 Uncharacterised protein family UPF0047 D5125_06865 PF01042 Endoribonuclease L-PSP D5125_06870 PF13291 ACT domain D5125_06870 PF04607 Region found in RelA / SpoT proteins D5125_06870 PF02824 TGS domain D5125_06875 PF01192 RNA polymerase Rpb6 D5125_06880 PF03279 Bacterial lipid A biosynthesis acyltransferase D5125_06885 PF08335 GlnD PII-uridylyltransferase D5125_06885 PF03710 Glutamate-ammonia ligase adenylyltransferase D5125_06890 PF01063 Amino-transferase class IV D5125_06905 PF00534 Glycosyl transferases group 1 D5125_06910 PF02540 NAD synthase D5125_06910 PF00795 Carbon-nitrogen hydrolase D5125_06920 PF02629 CoA binding domain D5125_06920 PF00549 CoA-ligase D5125_06925 PF08442 ATP-grasp domain D5125_06925 PF00549 CoA-ligase D5125_06935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_06935 PF00512 His Kinase A (phospho-acceptor) domain D5125_06940 PF02954 Bacterial regulatory protein, Fis family D5125_06940 PF00072 Response regulator receiver domain D5125_06940 PF00158 Sigma-54 interaction domain D5125_06960 PF00586 AIR synthase related protein, N-terminal domain D5125_06960 PF02769 AIR synthase related protein, C-terminal domain D5125_06965 PF01924 Hydrogenase formation hypA family D5125_06970 PF01455 HupF/HypC family D5125_06975 PF01381 Helix-turn-helix D5125_06980 PF02492 CobW/HypB/UreG, nucleotide-binding domain D5125_06985 PF00301 Rubredoxin D5125_06985 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE D5125_06995 PF01750 Hydrogenase maturation protease D5125_07000 PF00374 Nickel-dependent hydrogenase D5125_07005 PF03916 Polysulphide reductase, NrfD D5125_07010 PF13247 4Fe-4S dicluster domain D5125_07015 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D5125_07015 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D5125_07020 PF00158 Sigma-54 interaction domain D5125_07020 PF00072 Response regulator receiver domain D5125_07020 PF02954 Bacterial regulatory protein, Fis family D5125_07025 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D5125_07040 PF01925 Sulfite exporter TauE/SafE D5125_07050 PF00293 NUDIX domain D5125_07055 PF01960 ArgJ family D5125_07065 PF07516 SecA Wing and Scaffold domain D5125_07065 PF01043 SecA preprotein cross-linking domain D5125_07065 PF02810 SEC-C motif D5125_07065 PF07517 SecA DEAD-like domain D5125_07075 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D5125_07080 PF00091 Tubulin/FtsZ family, GTPase domain D5125_07080 PF12327 FtsZ family, C-terminal domain D5125_07085 PF02491 SHS2 domain inserted in FTSA D5125_07090 PF08478 POTRA domain, FtsQ-type D5125_07090 PF03799 Cell division protein FtsQ D5125_07095 PF07478 D-ala D-ala ligase C-terminus D5125_07095 PF01820 D-ala D-ala ligase N-terminus D5125_07100 PF01565 FAD binding domain D5125_07100 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D5125_07105 PF08245 Mur ligase middle domain D5125_07105 PF02875 Mur ligase family, glutamate ligase domain D5125_07105 PF01225 Mur ligase family, catalytic domain D5125_07110 PF03033 Glycosyltransferase family 28 N-terminal domain D5125_07110 PF04101 Glycosyltransferase family 28 C-terminal domain D5125_07115 PF01098 Cell cycle protein D5125_07120 PF08245 Mur ligase middle domain D5125_07120 PF02875 Mur ligase family, glutamate ligase domain D5125_07125 PF00953 Glycosyl transferase family 4 D5125_07125 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D5125_07130 PF08245 Mur ligase middle domain D5125_07130 PF02875 Mur ligase family, glutamate ligase domain D5125_07130 PF01225 Mur ligase family, catalytic domain D5125_07135 PF08245 Mur ligase middle domain D5125_07135 PF01225 Mur ligase family, catalytic domain D5125_07135 PF02875 Mur ligase family, glutamate ligase domain D5125_07140 PF03717 Penicillin-binding Protein dimerisation domain D5125_07140 PF00905 Penicillin binding protein transpeptidase domain D5125_07145 PF04999 Cell division protein FtsL D5125_07150 PF01795 MraW methylase family D5125_07155 PF02381 MraZ protein, putative antitoxin-like D5125_07175 PF00578 AhpC/TSA family D5125_07180 PF01521 Iron-sulphur cluster biosynthesis D5125_07200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D5125_07205 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D5125_07205 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain D5125_07210 PF02874 ATP synthase alpha/beta family, beta-barrel domain D5125_07210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_07215 PF00231 ATP synthase D5125_07220 PF00306 ATP synthase alpha/beta chain, C terminal domain D5125_07220 PF02874 ATP synthase alpha/beta family, beta-barrel domain D5125_07220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_07225 PF00213 ATP synthase delta (OSCP) subunit D5125_07230 PF00430 ATP synthase B/B' CF(0) D5125_07235 PF00137 ATP synthase subunit C D5125_07240 PF00119 ATP synthase A chain D5125_07250 PF17762 HTH domain found in ParB protein D5125_07250 PF02195 ParB-like nuclease domain D5125_07255 PF13614 AAA domain D5125_07260 PF00990 Diguanylate cyclase, GGDEF domain D5125_07260 PF00072 Response regulator receiver domain D5125_07265 PF02527 rRNA small subunit methyltransferase G D5125_07270 PF13932 GidA associated domain D5125_07270 PF01134 Glucose inhibited division protein A D5125_07275 PF17863 AAA lid domain D5125_07275 PF07726 ATPase family associated with various cellular activities (AAA) D5125_07285 PF01841 Transglutaminase-like superfamily D5125_07285 PF13559 Domain of unknown function (DUF4129) D5125_07285 PF11992 Domain of unknown function (DUF3488) D5125_07290 PF01926 50S ribosome-binding GTPase D5125_07290 PF12631 MnmE helical domain D5125_07290 PF10396 GTP-binding protein TrmE N-terminus D5125_07295 PF14849 YidC periplasmic domain D5125_07295 PF02096 60Kd inner membrane protein D5125_07300 PF00825 Ribonuclease P D5125_07305 PF00468 Ribosomal protein L34 D5125_07310 PF11638 DnaA N-terminal domain D5125_07310 PF08299 Bacterial dnaA protein helix-turn-helix D5125_07310 PF00308 Bacterial dnaA protein D5125_07315 PF00712 DNA polymerase III beta subunit, N-terminal domain D5125_07315 PF02767 DNA polymerase III beta subunit, central domain D5125_07315 PF02768 DNA polymerase III beta subunit, C-terminal domain D5125_07320 PF02463 RecF/RecN/SMC N terminal domain D5125_07325 PF00986 DNA gyrase B subunit, carboxyl terminus D5125_07325 PF00204 DNA gyrase B D5125_07325 PF01751 Toprim domain D5125_07325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_07325 PF18053 DNA gyrase B subunit insert domain D5125_07335 PF05746 DALR anticodon binding domain D5125_07335 PF02092 Glycyl-tRNA synthetase beta subunit D5125_07340 PF02091 Glycyl-tRNA synthetase alpha subunit D5125_07355 PF16916 Dimerisation domain of Zinc Transporter D5125_07355 PF01545 Cation efflux family D5125_07360 PF03951 Glutamine synthetase, beta-Grasp domain D5125_07360 PF00120 Glutamine synthetase, catalytic domain D5125_07370 PF00989 PAS fold D5125_07370 PF00512 His Kinase A (phospho-acceptor) domain D5125_07370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_07375 PF00158 Sigma-54 interaction domain D5125_07375 PF02954 Bacterial regulatory protein, Fis family D5125_07375 PF00072 Response regulator receiver domain D5125_07390 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D5125_07390 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D5125_07400 PF02386 Cation transport protein D5125_07405 PF03652 Holliday junction resolvase D5125_07410 PF02622 Uncharacterized ACR, COG1678 D5125_07420 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D5125_07425 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D5125_07430 PF16653 Saccharopine dehydrogenase C-terminal domain D5125_07430 PF03435 Saccharopine dehydrogenase NADP binding domain D5125_07435 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D5125_07440 PF00583 Acetyltransferase (GNAT) family D5125_07440 PF00795 Carbon-nitrogen hydrolase D5125_07445 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D5125_07445 PF17810 Arginine decarboxylase helical bundle domain D5125_07445 PF17944 Arginine decarboxylase C-terminal helical extension D5125_07455 PF07690 Major Facilitator Superfamily D5125_07460 PF01784 NIF3 (NGG1p interacting factor 3) D5125_07465 PF00595 PDZ domain D5125_07465 PF13180 PDZ domain D5125_07470 PF00155 Aminotransferase class I and II D5125_07485 PF00815 Histidinol dehydrogenase D5125_07490 PF01634 ATP phosphoribosyltransferase D5125_07495 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D5125_07500 PF00005 ABC transporter D5125_07505 PF13472 GDSL-like Lipase/Acylhydrolase family D5125_07510 PF13667 ThiC-associated domain D5125_07510 PF01964 Radical SAM ThiC family D5125_07520 PF08918 PhoQ Sensor D5125_07520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_07525 PF00486 Transcriptional regulatory protein, C terminal D5125_07525 PF00072 Response regulator receiver domain D5125_07550 PF02470 MlaD protein D5125_07555 PF02405 Permease MlaE D5125_07560 PF00005 ABC transporter D5125_07565 PF01235 Sodium:alanine symporter family D5125_07595 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system D5125_07610 PF01609 Transposase DDE domain D5125_07650 PF01022 Bacterial regulatory protein, arsR family D5125_07655 PF03773 Predicted permease D5125_07670 PF00483 Nucleotidyl transferase D5125_07690 PF02569 Pantoate-beta-alanine ligase D5125_07695 PF02548 Ketopantoate hydroxymethyltransferase D5125_07700 PF01712 Deoxynucleoside kinase D5125_07705 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D5125_07710 PF12627 Probable RNA and SrmB- binding site of polymerase A D5125_07710 PF12626 Polymerase A arginine-rich C-terminus D5125_07710 PF01743 Poly A polymerase head domain D5125_07715 PF00072 Response regulator receiver domain D5125_07715 PF00211 Adenylate and Guanylate cyclase catalytic domain D5125_07745 PF01850 PIN domain D5125_07755 PF00268 Ribonucleotide reductase, small chain D5125_07760 PF00317 Ribonucleotide reductase, all-alpha domain D5125_07760 PF02867 Ribonucleotide reductase, barrel domain D5125_07760 PF03477 ATP cone domain D5125_07765 PF03167 Uracil DNA glycosylase superfamily D5125_07770 PF00072 Response regulator receiver domain D5125_07770 PF00196 Bacterial regulatory proteins, luxR family D5125_07785 PF00005 ABC transporter D5125_07785 PF12848 ABC transporter D5125_07790 PF01541 GIY-YIG catalytic domain D5125_07790 PF02151 UvrB/uvrC motif D5125_07790 PF08459 UvrC Helix-hairpin-helix N-terminal D5125_07795 PF01066 CDP-alcohol phosphatidyltransferase D5125_07810 PF00425 chorismate binding enzyme D5125_07810 PF04715 Anthranilate synthase component I, N terminal region D5125_07815 PF00072 Response regulator receiver domain D5125_07825 PF01979 Amidohydrolase family D5125_07835 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_07835 PF14602 Hexapeptide repeat of succinyl-transferase D5125_07835 PF12804 MobA-like NTP transferase domain D5125_07840 PF01380 SIS domain D5125_07845 PF00899 ThiF family D5125_07855 PF00271 Helicase conserved C-terminal domain D5125_07855 PF00176 SNF2 family N-terminal domain D5125_07855 PF12419 SNF2 Helicase protein D5125_07860 PF00145 C-5 cytosine-specific DNA methylase D5125_07910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D5125_07910 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_07975 PF02817 e3 binding domain D5125_07975 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D5125_07975 PF00364 Biotin-requiring enzyme D5125_07980 PF00456 Transketolase, thiamine diphosphate binding domain D5125_07980 PF17831 Pyruvate dehydrogenase E1 component middle domain D5125_07995 PF04333 MlaA lipoprotein D5125_08000 PF00929 Exonuclease D5125_08005 PF00462 Glutaredoxin D5125_08010 PF13537 Glutamine amidotransferase domain D5125_08010 PF00733 Asparagine synthase D5125_08015 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D5125_08015 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D5125_08020 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D5125_08020 PF02779 Transketolase, pyrimidine binding domain D5125_08020 PF02780 Transketolase, C-terminal domain D5125_08025 PF13368 Topoisomerase C-terminal repeat D5125_08025 PF01751 Toprim domain D5125_08025 PF01131 DNA topoisomerase D5125_08030 PF04361 Protein of unknown function (DUF494) D5125_08035 PF17782 DprA winged helix domain D5125_08035 PF02481 DNA recombination-mediator protein A D5125_08045 PF01327 Polypeptide deformylase D5125_08050 PF00072 Response regulator receiver domain D5125_08060 PF00890 FAD binding domain D5125_08065 PF13187 4Fe-4S dicluster domain D5125_08065 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit D5125_08070 PF04102 SlyX D5125_08080 PF00072 Response regulator receiver domain D5125_08085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_08085 PF00072 Response regulator receiver domain D5125_08085 PF01627 Hpt domain D5125_08085 PF00512 His Kinase A (phospho-acceptor) domain D5125_08085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_08085 PF00672 HAMP domain D5125_08090 PF00578 AhpC/TSA family D5125_08095 PF17176 tRNA-binding domain D5125_08095 PF05127 Helicase D5125_08095 PF13718 GNAT acetyltransferase 2 D5125_08095 PF08351 Domain of unknown function (DUF1726) D5125_08100 PF00669 Bacterial flagellin N-terminal helical region D5125_08100 PF00700 Bacterial flagellin C-terminal helical region D5125_08105 PF18030 RimK PreATP-grasp domain D5125_08105 PF08443 RimK-like ATP-grasp domain D5125_08115 PF08443 RimK-like ATP-grasp domain D5125_08115 PF18030 RimK PreATP-grasp domain D5125_08130 PF07690 Major Facilitator Superfamily D5125_08135 PF00501 AMP-binding enzyme D5125_08135 PF01553 Acyltransferase D5125_08140 PF01590 GAF domain D5125_08140 PF00158 Sigma-54 interaction domain D5125_08145 PF01590 GAF domain D5125_08145 PF05524 PEP-utilising enzyme, N-terminal D5125_08145 PF00391 PEP-utilising enzyme, mobile domain D5125_08145 PF02896 PEP-utilising enzyme, TIM barrel domain D5125_08150 PF00293 NUDIX domain D5125_08160 PF01032 FecCD transport family D5125_08165 PF00005 ABC transporter D5125_08175 PF00672 HAMP domain D5125_08175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_08175 PF00512 His Kinase A (phospho-acceptor) domain D5125_08175 PF01627 Hpt domain D5125_08175 PF00072 Response regulator receiver domain D5125_08175 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_08200 PF01502 Phosphoribosyl-AMP cyclohydrolase D5125_08205 PF16123 Hydroxyacylglutathione hydrolase C-terminus D5125_08205 PF00753 Metallo-beta-lactamase superfamily D5125_08210 PF13361 UvrD-like helicase C-terminal domain D5125_08210 PF00580 UvrD/REP helicase N-terminal domain D5125_08220 PF00072 Response regulator receiver domain D5125_08225 PF00303 Thymidylate synthase D5125_08230 PF01609 Transposase DDE domain D5125_08235 PF00145 C-5 cytosine-specific DNA methylase D5125_08250 PF00582 Universal stress protein family D5125_08255 PF17946 RecC C-terminal domain D5125_08260 PF12705 PD-(D/E)XK nuclease superfamily D5125_08260 PF00580 UvrD/REP helicase N-terminal domain D5125_08260 PF13361 UvrD-like helicase C-terminal domain D5125_08265 PF13538 UvrD-like helicase C-terminal domain D5125_08275 PF04452 RNA methyltransferase D5125_08280 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D5125_08280 PF06827 Zinc finger found in FPG and IleRS D5125_08280 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D5125_08300 PF00005 ABC transporter D5125_08305 PF03695 Uncharacterised protein family (UPF0149) D5125_08305 PF02810 SEC-C motif D5125_08310 PF05872 Bacterial protein of unknown function (DUF853) D5125_08320 PF07194 P2 response regulator binding domain D5125_08320 PF01584 CheW-like domain D5125_08320 PF01627 Hpt domain D5125_08320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_08320 PF02895 Signal transducing histidine kinase, homodimeric domain D5125_08325 PF01584 CheW-like domain D5125_08325 PF07194 P2 response regulator binding domain D5125_08325 PF01627 Hpt domain D5125_08325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_08325 PF02895 Signal transducing histidine kinase, homodimeric domain D5125_08330 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D5125_08330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_08335 PF01584 CheW-like domain D5125_08340 PF00072 Response regulator receiver domain D5125_08345 PF00072 Response regulator receiver domain D5125_08360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_08360 PF00072 Response regulator receiver domain D5125_08360 PF01627 Hpt domain D5125_08360 PF00512 His Kinase A (phospho-acceptor) domain D5125_08360 PF00672 HAMP domain D5125_08360 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_08365 PF00291 Pyridoxal-phosphate dependent enzyme D5125_08365 PF00585 C-terminal regulatory domain of Threonine dehydratase D5125_08370 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D5125_08380 PF03707 Bacterial signalling protein N terminal repeat D5125_08380 PF00990 Diguanylate cyclase, GGDEF domain D5125_08380 PF00563 EAL domain D5125_08385 PF01380 SIS domain D5125_08385 PF00571 CBS domain D5125_08390 PF01699 Sodium/calcium exchanger protein D5125_08405 PF10672 S-adenosylmethionine-dependent methyltransferase D5125_08405 PF17785 PUA-like domain D5125_08410 PF01790 Prolipoprotein diacylglyceryl transferase D5125_08415 PF12697 Alpha/beta hydrolase family D5125_08420 PF00224 Pyruvate kinase, barrel domain D5125_08420 PF02887 Pyruvate kinase, alpha/beta domain D5125_08425 PF00764 Arginosuccinate synthase D5125_08430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5125_08430 PF02785 Biotin carboxylase C-terminal domain D5125_08430 PF00289 Biotin carboxylase, N-terminal domain D5125_08435 PF00364 Biotin-requiring enzyme D5125_08435 PF00682 HMGL-like D5125_08435 PF02436 Conserved carboxylase domain D5125_08440 PF00437 Type II/IV secretion system protein D5125_08445 PF11871 Domain of unknown function (DUF3391) D5125_08445 PF01966 HD domain D5125_08450 PF00476 DNA polymerase family A D5125_08450 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D5125_08450 PF01367 5'-3' exonuclease, C-terminal SAM fold D5125_08450 PF01612 3'-5' exonuclease D5125_08485 PF01584 CheW-like domain D5125_08485 PF00072 Response regulator receiver domain D5125_08490 PF03705 CheR methyltransferase, all-alpha domain D5125_08490 PF01739 CheR methyltransferase, SAM binding domain D5125_08495 PF00460 Flagella basal body rod protein D5125_08500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5125_08500 PF00460 Flagella basal body rod protein D5125_08510 PF03963 Flagellar hook capping protein - N-terminal region D5125_08515 PF07559 Flagellar basal body protein FlaE D5125_08515 PF00460 Flagella basal body rod protein D5125_08515 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5125_08520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5125_08520 PF00460 Flagella basal body rod protein D5125_08530 PF10150 Ribonuclease E/G family D5125_08530 PF00575 S1 RNA binding domain D5125_08535 PF00270 DEAD/DEAH box helicase D5125_08535 PF00271 Helicase conserved C-terminal domain D5125_08535 PF03880 DbpA RNA binding domain D5125_08540 PF14693 Ribosomal protein TL5, C-terminal domain D5125_08540 PF01386 Ribosomal L25p family D5125_08545 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D5125_08545 PF14572 Phosphoribosyl synthetase-associated domain D5125_08555 PF00288 GHMP kinases N terminal domain D5125_08555 PF08544 GHMP kinases C terminal D5125_08560 PF03550 Outer membrane lipoprotein LolB D5125_08570 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D5125_08570 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D5125_08570 PF01488 Shikimate / quinate 5-dehydrogenase D5125_08575 PF03462 PCRF domain D5125_08575 PF00472 RF-1 domain D5125_08580 PF17827 PrmC N-terminal domain D5125_08580 PF05175 Methyltransferase small domain D5125_08590 PF00899 ThiF family D5125_08595 PF05175 Methyltransferase small domain D5125_08600 PF00990 Diguanylate cyclase, GGDEF domain D5125_08620 PF00034 Cytochrome c D5125_08625 PF03150 Di-haem cytochrome c peroxidase D5125_08625 PF00034 Cytochrome c D5125_08635 PF03264 NapC/NirT cytochrome c family, N-terminal region D5125_08640 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_08645 PF01814 Hemerythrin HHE cation binding domain D5125_08660 PF02934 GatB/GatE catalytic domain D5125_08660 PF02637 GatB domain D5125_08665 PF01425 Amidase D5125_08670 PF02686 Glu-tRNAGln amidotransferase C subunit D5125_08695 PF03717 Penicillin-binding Protein dimerisation domain D5125_08695 PF00905 Penicillin binding protein transpeptidase domain D5125_08700 PF01098 Cell cycle protein D5125_08705 PF13406 Transglycosylase SLT domain D5125_08710 PF03330 Lytic transglycolase D5125_08710 PF05036 Sporulation related domain D5125_08715 PF07943 Penicillin-binding protein 5, C-terminal domain D5125_08715 PF00768 D-alanyl-D-alanine carboxypeptidase D5125_08720 PF01063 Amino-transferase class IV D5125_08725 PF04359 Protein of unknown function (DUF493) D5125_08730 PF03099 Biotin/lipoate A/B protein ligase family D5125_08735 PF04055 Radical SAM superfamily D5125_08740 PF04055 Radical SAM superfamily D5125_08740 PF06463 Molybdenum Cofactor Synthesis C D5125_08755 PF00994 Probable molybdopterin binding domain D5125_08760 PF03454 MoeA C-terminal region (domain IV) D5125_08760 PF00994 Probable molybdopterin binding domain D5125_08760 PF03453 MoeA N-terminal region (domain I and II) D5125_08765 PF02597 ThiS family D5125_08770 PF03459 TOBE domain D5125_08770 PF00005 ABC transporter D5125_08775 PF00999 Sodium/hydrogen exchanger family D5125_08780 PF00582 Universal stress protein family D5125_08785 PF00528 Binding-protein-dependent transport system inner membrane component D5125_08795 PF00118 TCP-1/cpn60 chaperonin family D5125_08800 PF00166 Chaperonin 10 Kd subunit D5125_08805 PF00563 EAL domain D5125_08805 PF00990 Diguanylate cyclase, GGDEF domain D5125_08805 PF03707 Bacterial signalling protein N terminal repeat D5125_08815 PF00155 Aminotransferase class I and II D5125_08820 PF01842 ACT domain D5125_08820 PF00742 Homoserine dehydrogenase D5125_08820 PF03447 Homoserine dehydrogenase, NAD binding domain D5125_08830 PF00886 Ribosomal protein S16 D5125_08835 PF05239 PRC-barrel domain D5125_08835 PF01782 RimM N-terminal domain D5125_08840 PF01746 tRNA (Guanine-1)-methyltransferase D5125_08845 PF01245 Ribosomal protein L19 D5125_08855 PF00563 EAL domain D5125_08855 PF00990 Diguanylate cyclase, GGDEF domain D5125_08855 PF03707 Bacterial signalling protein N terminal repeat D5125_08860 PF00355 Rieske [2Fe-2S] domain D5125_08860 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal D5125_08865 PF00033 Cytochrome b/b6/petB D5125_08865 PF00032 Cytochrome b(C-terminal)/b6/petD D5125_08870 PF02167 Cytochrome C1 family D5125_08875 PF00043 Glutathione S-transferase, C-terminal domain D5125_08875 PF02798 Glutathione S-transferase, N-terminal domain D5125_08880 PF04386 Stringent starvation protein B D5125_08895 PF00873 AcrB/AcrD/AcrF family D5125_08900 PF00588 SpoU rRNA Methylase family D5125_08905 PF01180 Dihydroorotate dehydrogenase D5125_08910 PF03597 Cytochrome oxidase maturation protein cbb3-type D5125_08920 PF00403 Heavy-metal-associated domain D5125_08930 PF08241 Methyltransferase domain D5125_08935 PF00561 alpha/beta hydrolase fold D5125_08940 PF01966 HD domain D5125_08940 PF13286 Phosphohydrolase-associated domain D5125_08945 PF00072 Response regulator receiver domain D5125_08945 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_08945 PF00512 His Kinase A (phospho-acceptor) domain D5125_08945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_08945 PF01627 Hpt domain D5125_08945 PF00672 HAMP domain D5125_08955 PF03480 Bacterial extracellular solute-binding protein, family 7 D5125_08980 PF12161 HsdM N-terminal domain D5125_08980 PF02384 N-6 DNA Methylase D5125_08985 PF17761 DUF1016 N-terminal domain D5125_08985 PF06250 YhcG PDDEXK nuclease domain D5125_08990 PF01420 Type I restriction modification DNA specificity domain D5125_08995 PF13749 Putative ATP-dependent DNA helicase recG C-terminal D5125_08995 PF17191 RecG wedge domain D5125_08995 PF00270 DEAD/DEAH box helicase D5125_09010 PF00072 Response regulator receiver domain D5125_09010 PF00486 Transcriptional regulatory protein, C terminal D5125_09015 PF02080 TrkA-C domain D5125_09015 PF03600 Citrate transporter D5125_09020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_09020 PF03466 LysR substrate binding domain D5125_09035 PF17820 PDZ domain D5125_09035 PF13180 PDZ domain D5125_09045 PF01545 Cation efflux family D5125_09045 PF16916 Dimerisation domain of Zinc Transporter D5125_09050 PF13180 PDZ domain D5125_09105 PF00595 PDZ domain D5125_09180 PF13187 4Fe-4S dicluster domain D5125_09180 PF12838 4Fe-4S dicluster domain D5125_09200 PF00248 Aldo/keto reductase family D5125_09205 PF03707 Bacterial signalling protein N terminal repeat D5125_09205 PF00990 Diguanylate cyclase, GGDEF domain D5125_09205 PF00563 EAL domain D5125_09210 PF00990 Diguanylate cyclase, GGDEF domain D5125_09210 PF03707 Bacterial signalling protein N terminal repeat D5125_09210 PF00563 EAL domain D5125_09215 PF01966 HD domain D5125_09215 PF11871 Domain of unknown function (DUF3391) D5125_09220 PF00873 AcrB/AcrD/AcrF family D5125_09225 PF13533 Biotin-lipoyl like D5125_09230 PF00563 EAL domain D5125_09230 PF08668 HDOD domain D5125_09240 PF00990 Diguanylate cyclase, GGDEF domain D5125_09240 PF03707 Bacterial signalling protein N terminal repeat D5125_09240 PF00563 EAL domain D5125_09245 PF00365 Phosphofructokinase D5125_09250 PF12848 ABC transporter D5125_09250 PF00005 ABC transporter D5125_09255 PF09820 Predicted AAA-ATPase D5125_09255 PF08011 PD-(D/E)XK nuclease superfamily D5125_09260 PF08011 PD-(D/E)XK nuclease superfamily D5125_09260 PF09820 Predicted AAA-ATPase D5125_09265 PF12729 Four helix bundle sensory module for signal transduction D5125_09265 PF00672 HAMP domain D5125_09265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_09270 PF00072 Response regulator receiver domain D5125_09270 PF01339 CheB methylesterase D5125_09275 PF01739 CheR methyltransferase, SAM binding domain D5125_09280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_09280 PF01627 Hpt domain D5125_09280 PF00072 Response regulator receiver domain D5125_09280 PF01584 CheW-like domain D5125_09285 PF00072 Response regulator receiver domain D5125_09285 PF00158 Sigma-54 interaction domain D5125_09290 PF05230 MASE2 domain D5125_09290 PF00990 Diguanylate cyclase, GGDEF domain D5125_09310 PF01695 IstB-like ATP binding protein D5125_09315 PF00665 Integrase core domain D5125_09370 PF00589 Phage integrase family D5125_09370 PF02899 Phage integrase, N-terminal SAM-like domain D5125_09415 PF00155 Aminotransferase class I and II D5125_09420 PF12344 Ultra-violet resistance protein B D5125_09420 PF02151 UvrB/uvrC motif D5125_09420 PF04851 Type III restriction enzyme, res subunit D5125_09420 PF00271 Helicase conserved C-terminal domain D5125_09420 PF17757 UvrB interaction domain D5125_09430 PF01300 Telomere recombination D5125_09440 PF00719 Inorganic pyrophosphatase D5125_09450 PF01967 MoaC family D5125_09455 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D5125_09460 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system D5125_09470 PF00456 Transketolase, thiamine diphosphate binding domain D5125_09470 PF02779 Transketolase, pyrimidine binding domain D5125_09470 PF02780 Transketolase, C-terminal domain D5125_09480 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D5125_09480 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D5125_09485 PF00162 Phosphoglycerate kinase D5125_09490 PF02887 Pyruvate kinase, alpha/beta domain D5125_09490 PF00224 Pyruvate kinase, barrel domain D5125_09495 PF01116 Fructose-bisphosphate aldolase class-II D5125_09510 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D5125_09530 PF01926 50S ribosome-binding GTPase D5125_09530 PF10396 GTP-binding protein TrmE N-terminus D5125_09530 PF12631 MnmE helical domain D5125_09535 PF10396 GTP-binding protein TrmE N-terminus D5125_09535 PF01926 50S ribosome-binding GTPase D5125_09535 PF12631 MnmE helical domain D5125_09540 PF00285 Citrate synthase, C-terminal domain D5125_09545 PF00390 Malic enzyme, N-terminal domain D5125_09545 PF03949 Malic enzyme, NAD binding domain D5125_09560 PF01197 Ribosomal protein L31 D5125_09565 PF06968 Biotin and Thiamin Synthesis associated domain D5125_09565 PF04055 Radical SAM superfamily D5125_09570 PF00155 Aminotransferase class I and II D5125_09595 PF02163 Peptidase family M50 D5125_09595 PF17820 PDZ domain D5125_09600 PF03411 Penicillin-insensitive murein endopeptidase D5125_09615 PF14489 QueF-like protein D5125_09620 PF00374 Nickel-dependent hydrogenase D5125_09625 PF08011 PD-(D/E)XK nuclease superfamily D5125_09625 PF09820 Predicted AAA-ATPase D5125_09630 PF05685 Putative restriction endonuclease D5125_09650 PF01609 Transposase DDE domain D5125_09655 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D5125_09660 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_09670 PF01381 Helix-turn-helix D5125_09680 PF00114 Pilin (bacterial filament) D5125_09680 PF07963 Prokaryotic N-terminal methylation motif D5125_09695 PF13847 Methyltransferase domain D5125_09695 PF03551 Transcriptional regulator PadR-like family D5125_09715 PF01381 Helix-turn-helix D5125_09740 PF05981 CreA protein D5125_09745 PF13742 OB-fold nucleic acid binding domain D5125_09745 PF02601 Exonuclease VII, large subunit D5125_09750 PF00478 IMP dehydrogenase / GMP reductase domain D5125_09750 PF00571 CBS domain D5125_09755 PF00117 Glutamine amidotransferase class-I D5125_09755 PF00958 GMP synthase C terminal domain D5125_09755 PF02540 NAD synthase D5125_09760 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB D5125_09790 PF12728 Helix-turn-helix domain D5125_09790 PF02661 Fic/DOC family D5125_09830 PF04358 DsrC like protein D5125_09855 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D5125_09855 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D5125_09860 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D5125_09860 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D5125_09865 PF02635 DsrE/DsrF-like family D5125_09870 PF02635 DsrE/DsrF-like family D5125_09875 PF04077 DsrH like protein D5125_09880 PF04358 DsrC like protein D5125_09895 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_09895 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D5125_09905 PF13247 4Fe-4S dicluster domain D5125_09915 PF07685 CobB/CobQ-like glutamine amidotransferase domain D5125_09915 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D5125_09935 PF02222 ATP-grasp domain D5125_09935 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D5125_09940 PF00731 AIR carboxylase D5125_09945 PF02719 Polysaccharide biosynthesis protein D5125_09950 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5125_09955 PF00037 4Fe-4S binding domain D5125_09960 PF01467 Cytidylyltransferase-like D5125_09975 PF00675 Insulinase (Peptidase family M16) D5125_09975 PF05193 Peptidase M16 inactive domain D5125_09980 PF00675 Insulinase (Peptidase family M16) D5125_09980 PF05193 Peptidase M16 inactive domain D5125_09985 PF02881 SRP54-type protein, helical bundle domain D5125_09985 PF00448 SRP54-type protein, GTPase domain D5125_09990 PF00005 ABC transporter D5125_09995 PF18075 FtsX extracellular domain D5125_10000 PF17200 Single Cache domain 2 D5125_10000 PF00672 HAMP domain D5125_10000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_10005 PF04545 Sigma-70, region 4 D5125_10005 PF04542 Sigma-70 region 2 D5125_10005 PF00140 Sigma-70 factor, region 1.2 D5125_10025 PF01695 IstB-like ATP binding protein D5125_10030 PF00665 Integrase core domain D5125_10050 PF01420 Type I restriction modification DNA specificity domain D5125_10060 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain D5125_10060 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain D5125_10065 PF00101 Ribulose bisphosphate carboxylase, small chain D5125_10115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_10115 PF03466 LysR substrate binding domain D5125_10120 PF00534 Glycosyl transferases group 1 D5125_10120 PF13439 Glycosyltransferase Family 4 D5125_10135 PF00672 HAMP domain D5125_10135 PF12729 Four helix bundle sensory module for signal transduction D5125_10135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_10145 PF00990 Diguanylate cyclase, GGDEF domain D5125_10145 PF03707 Bacterial signalling protein N terminal repeat D5125_10145 PF00563 EAL domain D5125_10160 PF00534 Glycosyl transferases group 1 D5125_10160 PF13439 Glycosyltransferase Family 4 D5125_10165 PF05685 Putative restriction endonuclease D5125_10175 PF01809 Putative membrane protein insertion efficiency factor D5125_10185 PF00571 CBS domain D5125_10205 PF13614 AAA domain D5125_10220 PF00871 Acetokinase family D5125_10225 PF01515 Phosphate acetyl/butaryl transferase D5125_10225 PF07085 DRTGG domain D5125_10245 PF00437 Type II/IV secretion system protein D5125_10250 PF00180 Isocitrate/isopropylmalate dehydrogenase D5125_10255 PF00313 'Cold-shock' DNA-binding domain D5125_10260 PF02617 ATP-dependent Clp protease adaptor protein ClpS D5125_10265 PF17871 AAA lid domain D5125_10265 PF07724 AAA domain (Cdc48 subfamily) D5125_10265 PF02861 Clp amino terminal domain, pathogenicity island component D5125_10265 PF00004 ATPase family associated with various cellular activities (AAA) D5125_10265 PF10431 C-terminal, D2-small domain, of ClpB protein D5125_10270 PF01176 Translation initiation factor 1A / IF-1 D5125_10275 PF03707 Bacterial signalling protein N terminal repeat D5125_10275 PF00563 EAL domain D5125_10275 PF00990 Diguanylate cyclase, GGDEF domain D5125_10280 PF01339 CheB methylesterase D5125_10280 PF03705 CheR methyltransferase, all-alpha domain D5125_10280 PF08448 PAS fold D5125_10280 PF01739 CheR methyltransferase, SAM binding domain D5125_10285 PF00196 Bacterial regulatory proteins, luxR family D5125_10285 PF00072 Response regulator receiver domain D5125_10310 PF05114 Protein of unknown function (DUF692) D5125_10320 PF07681 DoxX D5125_10325 PF13188 PAS domain D5125_10325 PF03707 Bacterial signalling protein N terminal repeat D5125_10325 PF00990 Diguanylate cyclase, GGDEF domain D5125_10325 PF00563 EAL domain D5125_10330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_10330 PF00672 HAMP domain D5125_10330 PF02743 Cache domain D5125_10335 PF00072 Response regulator receiver domain D5125_10335 PF01584 CheW-like domain D5125_10345 PF00842 Alanine racemase, C-terminal domain D5125_10345 PF01168 Alanine racemase, N-terminal domain D5125_10350 PF18073 Rubredoxin metal binding domain D5125_10355 PF17151 Periplasmic sensor domain D5125_10355 PF00990 Diguanylate cyclase, GGDEF domain D5125_10360 PF00072 Response regulator receiver domain D5125_10360 PF00990 Diguanylate cyclase, GGDEF domain D5125_10380 PF02666 Phosphatidylserine decarboxylase D5125_10390 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D5125_10390 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D5125_10395 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D5125_10400 PF02233 NAD(P) transhydrogenase beta subunit D5125_10425 PF00669 Bacterial flagellin N-terminal helical region D5125_10425 PF00700 Bacterial flagellin C-terminal helical region D5125_10430 PF00669 Bacterial flagellin N-terminal helical region D5125_10430 PF08884 Flagellin D3 domain D5125_10430 PF00700 Bacterial flagellin C-terminal helical region D5125_10435 PF03646 FlaG protein D5125_10440 PF07195 Flagellar hook-associated protein 2 C-terminus D5125_10440 PF07196 Flagellin hook IN motif D5125_10440 PF02465 Flagellar hook-associated protein 2 N-terminus D5125_10445 PF02561 Flagellar protein FliS D5125_10455 PF01578 Cytochrome C assembly protein D5125_10460 PF00448 SRP54-type protein, GTPase domain D5125_10460 PF02881 SRP54-type protein, helical bundle domain D5125_10460 PF02978 Signal peptide binding domain D5125_10465 PF05685 Putative restriction endonuclease D5125_10475 PF00696 Amino acid kinase family D5125_10475 PF00583 Acetyltransferase (GNAT) family D5125_10480 PF07687 Peptidase dimerisation domain D5125_10480 PF01546 Peptidase family M20/M25/M40 D5125_10485 PF00920 Dehydratase family D5125_10490 PF00696 Amino acid kinase family D5125_10490 PF00742 Homoserine dehydrogenase D5125_10490 PF13840 ACT domain D5125_10490 PF03447 Homoserine dehydrogenase, NAD binding domain D5125_10490 PF01842 ACT domain D5125_10495 PF01235 Sodium:alanine symporter family D5125_10500 PF00924 Mechanosensitive ion channel D5125_10510 PF07238 PilZ domain D5125_10515 PF08676 MutL C terminal dimerisation domain D5125_10515 PF01119 DNA mismatch repair protein, C-terminal domain D5125_10520 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D5125_10525 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_10530 PF14659 Phage integrase, N-terminal SAM-like domain D5125_10530 PF13356 Arm DNA-binding domain D5125_10530 PF00589 Phage integrase family D5125_10550 PF00436 Single-strand binding protein family D5125_10555 PF04231 Endonuclease I D5125_10580 PF04002 RadC-like JAB domain D5125_10585 PF13362 Toprim domain D5125_10585 PF08401 Domain of unknown function (DUF1738) D5125_10585 PF18818 Metallopeptidase superfamily domain D5125_10590 PF00216 Bacterial DNA-binding protein D5125_10600 PF01027 Inhibitor of apoptosis-promoting Bax1 D5125_10610 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) D5125_10615 PF02403 Seryl-tRNA synthetase N-terminal domain D5125_10615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D5125_10625 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D5125_10650 PF01722 BolA-like protein D5125_10660 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 D5125_10665 PF00085 Thioredoxin D5125_10670 PF00490 Delta-aminolevulinic acid dehydratase D5125_10690 PF03976 Polyphosphate kinase 2 (PPK2) D5125_10695 PF01865 Protein of unknown function DUF47 D5125_10700 PF01384 Phosphate transporter family D5125_10715 PF18415 Histidine kinase receptor ArcB trans-membrane domain D5125_10715 PF00512 His Kinase A (phospho-acceptor) domain D5125_10715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_10715 PF00072 Response regulator receiver domain D5125_10715 PF00989 PAS fold D5125_10715 PF01627 Hpt domain D5125_10720 PF03707 Bacterial signalling protein N terminal repeat D5125_10720 PF00563 EAL domain D5125_10720 PF00990 Diguanylate cyclase, GGDEF domain D5125_10725 PF02616 Segregation and condensation protein ScpA D5125_10730 PF00579 tRNA synthetases class I (W and Y) D5125_10735 PF02163 Peptidase family M50 D5125_10740 PF01300 Telomere recombination D5125_10745 PF02811 PHP domain D5125_10755 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D5125_10755 PF01138 3' exoribonuclease family, domain 1 D5125_10755 PF03725 3' exoribonuclease family, domain 2 D5125_10755 PF00013 KH domain D5125_10755 PF00575 S1 RNA binding domain D5125_10760 PF00312 Ribosomal protein S15 D5125_10765 PF01509 TruB family pseudouridylate synthase (N terminal domain) D5125_10765 PF09157 Pseudouridine synthase II TruB, C-terminal D5125_10765 PF16198 tRNA pseudouridylate synthase B C-terminal domain D5125_10770 PF02033 Ribosome-binding factor A D5125_10775 PF11987 Translation-initiation factor 2 D5125_10775 PF03144 Elongation factor Tu domain 2 D5125_10775 PF08364 Bacterial translation initiation factor IF-2 associated region D5125_10775 PF04760 Translation initiation factor IF-2, N-terminal region D5125_10775 PF00009 Elongation factor Tu GTP binding domain D5125_10780 PF00575 S1 RNA binding domain D5125_10780 PF08529 NusA N-terminal domain D5125_10780 PF13184 NusA-like KH domain D5125_10785 PF17384 RimP C-terminal SH3 domain D5125_10785 PF02576 RimP N-terminal domain D5125_10795 PF03658 RnfH family Ubiquitin D5125_10800 PF03364 Polyketide cyclase / dehydrase and lipid transport D5125_10805 PF00209 Sodium:neurotransmitter symporter family D5125_10810 PF01668 SmpB protein D5125_10820 PF13356 Arm DNA-binding domain D5125_10820 PF00589 Phage integrase family D5125_10820 PF14659 Phage integrase, N-terminal SAM-like domain D5125_10825 PF01300 Telomere recombination D5125_10830 PF02163 Peptidase family M50 D5125_10835 PF00579 tRNA synthetases class I (W and Y) D5125_10840 PF02616 Segregation and condensation protein ScpA D5125_10845 PF00563 EAL domain D5125_10845 PF03707 Bacterial signalling protein N terminal repeat D5125_10845 PF00990 Diguanylate cyclase, GGDEF domain D5125_10850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_10850 PF00072 Response regulator receiver domain D5125_10850 PF00512 His Kinase A (phospho-acceptor) domain D5125_10850 PF18415 Histidine kinase receptor ArcB trans-membrane domain D5125_10850 PF01627 Hpt domain D5125_10850 PF00989 PAS fold D5125_10855 PF00145 C-5 cytosine-specific DNA methylase D5125_10875 PF01420 Type I restriction modification DNA specificity domain D5125_10885 PF17191 RecG wedge domain D5125_10885 PF13749 Putative ATP-dependent DNA helicase recG C-terminal D5125_10885 PF00270 DEAD/DEAH box helicase D5125_10905 PF00092 von Willebrand factor type A domain D5125_10905 PF07584 Aerotolerance regulator N-terminal D5125_10910 PF00092 von Willebrand factor type A domain D5125_10920 PF01882 Protein of unknown function DUF58 D5125_10925 PF17863 AAA lid domain D5125_10925 PF07726 ATPase family associated with various cellular activities (AAA) D5125_10930 PF00563 EAL domain D5125_10930 PF00990 Diguanylate cyclase, GGDEF domain D5125_10930 PF03707 Bacterial signalling protein N terminal repeat D5125_10935 PF00510 Cytochrome c oxidase subunit III D5125_10945 PF00085 Thioredoxin D5125_10950 PF00924 Mechanosensitive ion channel D5125_10950 PF12794 Mechanosensitive ion channel inner membrane domain 1 D5125_10950 PF12795 Mechanosensitive ion channel porin domain D5125_10955 PF00762 Ferrochelatase D5125_10960 PF03734 L,D-transpeptidase catalytic domain D5125_10960 PF17969 L,D-transpeptidase C-terminal domain D5125_10980 PF00403 Heavy-metal-associated domain D5125_11005 PF00578 AhpC/TSA family D5125_11040 PF02687 FtsX-like permease family D5125_11040 PF12704 MacB-like periplasmic core domain D5125_11040 PF00005 ABC transporter D5125_11050 PF00543 Nitrogen regulatory protein P-II D5125_11055 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D5125_11060 PF02348 Cytidylyltransferase D5125_11075 PF08501 Shikimate dehydrogenase substrate binding domain D5125_11075 PF01488 Shikimate / quinate 5-dehydrogenase D5125_11075 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D5125_11080 PF00873 AcrB/AcrD/AcrF family D5125_11100 PF01544 CorA-like Mg2+ transporter protein D5125_11115 PF00293 NUDIX domain D5125_11120 PF00535 Glycosyl transferase family 2 D5125_11140 PF13419 Haloacid dehalogenase-like hydrolase D5125_11145 PF12300 ATP-dependent RNA helicase RhlB D5125_11145 PF00270 DEAD/DEAH box helicase D5125_11145 PF00271 Helicase conserved C-terminal domain D5125_11150 PF00085 Thioredoxin D5125_11155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_11155 PF07498 Rho termination factor, N-terminal domain D5125_11155 PF07497 Rho termination factor, RNA-binding domain D5125_11180 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D5125_11180 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D5125_11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_11185 PF00512 His Kinase A (phospho-acceptor) domain D5125_11185 PF09308 LuxQ, periplasmic D5125_11185 PF00072 Response regulator receiver domain D5125_11190 PF02954 Bacterial regulatory protein, Fis family D5125_11190 PF00072 Response regulator receiver domain D5125_11190 PF00158 Sigma-54 interaction domain D5125_11195 PF00072 Response regulator receiver domain D5125_11200 PF12833 Helix-turn-helix domain D5125_11205 PF01743 Poly A polymerase head domain D5125_11205 PF12627 Probable RNA and SrmB- binding site of polymerase A D5125_11205 PF01966 HD domain D5125_11210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D5125_11215 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D5125_11215 PF07730 Histidine kinase D5125_11215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_11215 PF00672 HAMP domain D5125_11220 PF00072 Response regulator receiver domain D5125_11220 PF00196 Bacterial regulatory proteins, luxR family D5125_11225 PF00581 Rhodanese-like domain D5125_11230 PF00529 HlyD membrane-fusion protein of T1SS D5125_11230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_11235 PF00873 AcrB/AcrD/AcrF family D5125_11245 PF00459 Inositol monophosphatase family D5125_11320 PF00665 Integrase core domain D5125_11325 PF01695 IstB-like ATP binding protein D5125_11345 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D5125_11385 PF13495 Phage integrase, N-terminal SAM-like domain D5125_11385 PF00589 Phage integrase family D5125_11390 PF02754 Cysteine-rich domain D5125_11395 PF13085 2Fe-2S iron-sulfur cluster binding domain D5125_11395 PF13183 4Fe-4S dicluster domain D5125_11400 PF04324 BFD-like [2Fe-2S] binding domain D5125_11400 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_11405 PF01593 Flavin containing amine oxidoreductase D5125_11410 PF07728 AAA domain (dynein-related subfamily) D5125_11410 PF08406 CbbQ/NirQ/NorQ C-terminal D5125_11415 PF00164 Ribosomal protein S12/S23 D5125_11420 PF00177 Ribosomal protein S7p/S5e D5125_11425 PF14492 Elongation Factor G, domain II D5125_11425 PF03764 Elongation factor G, domain IV D5125_11425 PF00679 Elongation factor G C-terminus D5125_11425 PF03144 Elongation factor Tu domain 2 D5125_11425 PF00009 Elongation factor Tu GTP binding domain D5125_11430 PF00009 Elongation factor Tu GTP binding domain D5125_11430 PF03143 Elongation factor Tu C-terminal domain D5125_11430 PF03144 Elongation factor Tu domain 2 D5125_11435 PF00338 Ribosomal protein S10p/S20e D5125_11440 PF00297 Ribosomal protein L3 D5125_11445 PF00573 Ribosomal protein L4/L1 family D5125_11450 PF00276 Ribosomal protein L23 D5125_11455 PF03947 Ribosomal Proteins L2, C-terminal domain D5125_11455 PF00181 Ribosomal Proteins L2, RNA binding domain D5125_11460 PF00203 Ribosomal protein S19 D5125_11465 PF00237 Ribosomal protein L22p/L17e D5125_11470 PF07650 KH domain D5125_11470 PF00189 Ribosomal protein S3, C-terminal domain D5125_11475 PF00252 Ribosomal protein L16p/L10e D5125_11480 PF00831 Ribosomal L29 protein D5125_11485 PF00366 Ribosomal protein S17 D5125_11490 PF00238 Ribosomal protein L14p/L23e D5125_11495 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D5125_11500 PF00673 ribosomal L5P family C-terminus D5125_11500 PF00281 Ribosomal protein L5 D5125_11505 PF00253 Ribosomal protein S14p/S29e D5125_11510 PF00410 Ribosomal protein S8 D5125_11515 PF00347 Ribosomal protein L6 D5125_11520 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D5125_11525 PF00333 Ribosomal protein S5, N-terminal domain D5125_11525 PF03719 Ribosomal protein S5, C-terminal domain D5125_11530 PF00327 Ribosomal protein L30p/L7e D5125_11540 PF00344 SecY translocase D5125_11545 PF00444 Ribosomal protein L36 D5125_11550 PF00416 Ribosomal protein S13/S18 D5125_11555 PF00411 Ribosomal protein S11 D5125_11560 PF00163 Ribosomal protein S4/S9 N-terminal domain D5125_11560 PF01479 S4 domain D5125_11565 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D5125_11565 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D5125_11565 PF01000 RNA polymerase Rpb3/RpoA insert domain D5125_11570 PF01196 Ribosomal protein L17 D5125_11580 PF08448 PAS fold D5125_11580 PF00990 Diguanylate cyclase, GGDEF domain D5125_11580 PF00563 EAL domain D5125_11580 PF08447 PAS fold D5125_11590 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D5125_11590 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D5125_11595 PF07724 AAA domain (Cdc48 subfamily) D5125_11595 PF10431 C-terminal, D2-small domain, of ClpB protein D5125_11595 PF00004 ATPase family associated with various cellular activities (AAA) D5125_11600 PF00227 Proteasome subunit D5125_11605 PF02080 TrkA-C domain D5125_11605 PF02254 TrkA-N domain D5125_11610 PF00158 Sigma-54 interaction domain D5125_11610 PF00072 Response regulator receiver domain D5125_11610 PF02954 Bacterial regulatory protein, Fis family D5125_11615 PF00512 His Kinase A (phospho-acceptor) domain D5125_11615 PF00989 PAS fold D5125_11615 PF00672 HAMP domain D5125_11615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_11625 PF01189 16S rRNA methyltransferase RsmB/F D5125_11625 PF01029 NusB family D5125_11630 PF00551 Formyl transferase D5125_11630 PF02911 Formyl transferase, C-terminal domain D5125_11665 PF03884 DNA gyrase inhibitor YacG D5125_11670 PF07072 Cell division protein D5125_11675 PF01121 Dephospho-CoA kinase D5125_11680 PF01478 Type IV leader peptidase family D5125_11680 PF06750 Bacterial Peptidase A24 N-terminal domain D5125_11685 PF00482 Type II secretion system (T2SS), protein F D5125_11690 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D5125_11690 PF00437 Type II/IV secretion system protein D5125_11695 PF05191 Adenylate kinase, active site lid D5125_11730 PF01676 Metalloenzyme superfamily D5125_11730 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D5125_11735 PF01551 Peptidase family M23 D5125_11740 PF13180 PDZ domain D5125_11740 PF03572 Peptidase family S41 D5125_11745 PF04748 Divergent polysaccharide deacetylase D5125_11750 PF01965 DJ-1/PfpI family D5125_11760 PF07670 Nucleoside recognition D5125_11760 PF17910 FeoB cytosolic helical domain D5125_11760 PF07664 Ferrous iron transport protein B C terminus D5125_11760 PF04023 FeoA domain D5125_11760 PF02421 Ferrous iron transport protein B D5125_11770 PF13609 Gram-negative porin D5125_11790 PF08264 Anticodon-binding domain of tRNA D5125_11790 PF00133 tRNA synthetases class I (I, L, M and V) D5125_11790 PF13603 Leucyl-tRNA synthetase, Domain 2 D5125_11820 PF07963 Prokaryotic N-terminal methylation motif D5125_11820 PF00114 Pilin (bacterial filament) D5125_11885 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_11890 PF00156 Phosphoribosyl transferase domain D5125_11895 PF01979 Amidohydrolase family D5125_11900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D5125_11900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D5125_11905 PF00156 Phosphoribosyl transferase domain D5125_11915 PF00731 AIR carboxylase D5125_11925 PF01725 Ham1 family D5125_11930 PF01138 3' exoribonuclease family, domain 1 D5125_11930 PF03725 3' exoribonuclease family, domain 2 D5125_11945 PF03755 YicC-like family, N-terminal region D5125_11945 PF08340 Domain of unknown function (DUF1732) D5125_11950 PF13356 Arm DNA-binding domain D5125_11950 PF00589 Phage integrase family D5125_11970 PF01695 IstB-like ATP binding protein D5125_12015 PF01420 Type I restriction modification DNA specificity domain D5125_12030 PF12161 HsdM N-terminal domain D5125_12030 PF02384 N-6 DNA Methylase D5125_12035 PF08463 EcoEI R protein C-terminal D5125_12035 PF04851 Type III restriction enzyme, res subunit D5125_12035 PF00271 Helicase conserved C-terminal domain D5125_12035 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_12070 PF14437 MafB19-like deaminase D5125_12080 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D5125_12080 PF13247 4Fe-4S dicluster domain D5125_12080 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_12120 PF00158 Sigma-54 interaction domain D5125_12120 PF01590 GAF domain D5125_12120 PF02954 Bacterial regulatory protein, Fis family D5125_12125 PF00158 Sigma-54 interaction domain D5125_12125 PF02954 Bacterial regulatory protein, Fis family D5125_12130 PF02049 Flagellar hook-basal body complex protein FliE D5125_12135 PF01514 Secretory protein of YscJ/FliF family D5125_12135 PF08345 Flagellar M-ring protein C-terminal D5125_12140 PF01706 FliG C-terminal domain D5125_12140 PF14841 FliG middle domain D5125_12140 PF14842 FliG N-terminal domain D5125_12150 PF18269 T3SS EscN ATPase C-terminal domain D5125_12150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_12165 PF01464 Transglycosylase SLT domain D5125_12175 PF00075 RNase H D5125_12180 PF00929 Exonuclease D5125_12185 PF00873 AcrB/AcrD/AcrF family D5125_12190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_12215 PF02789 Cytosol aminopeptidase family, N-terminal domain D5125_12215 PF00883 Cytosol aminopeptidase family, catalytic domain D5125_12220 PF00154 recA bacterial DNA recombination protein D5125_12225 PF02631 RecX family D5125_12235 PF17746 SfsA N-terminal OB domain D5125_12235 PF03749 Sugar fermentation stimulation protein RE domain D5125_12245 PF01411 tRNA synthetases class II (A) D5125_12245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D5125_12245 PF02272 DHHA1 domain D5125_12250 PF12704 MacB-like periplasmic core domain D5125_12250 PF02687 FtsX-like permease family D5125_12255 PF00005 ABC transporter D5125_12260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_12260 PF03466 LysR substrate binding domain D5125_12265 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain D5125_12265 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain D5125_12270 PF08406 CbbQ/NirQ/NorQ C-terminal D5125_12270 PF07728 AAA domain (dynein-related subfamily) D5125_12275 PF00092 von Willebrand factor type A domain D5125_12280 PF00106 short chain dehydrogenase D5125_12285 PF16921 Tex protein YqgF-like domain D5125_12285 PF17674 HHH domain D5125_12285 PF00575 S1 RNA binding domain D5125_12285 PF09371 Tex-like protein N-terminal domain D5125_12375 PF01975 Survival protein SurE D5125_12385 PF09335 SNARE associated Golgi protein D5125_12390 PF01551 Peptidase family M23 D5125_12390 PF01476 LysM domain D5125_12395 PF00140 Sigma-70 factor, region 1.2 D5125_12395 PF04542 Sigma-70 region 2 D5125_12395 PF04539 Sigma-70 region 3 D5125_12395 PF04545 Sigma-70, region 4 D5125_12400 PF00158 Sigma-54 interaction domain D5125_12400 PF02954 Bacterial regulatory protein, Fis family D5125_12400 PF00072 Response regulator receiver domain D5125_12405 PF00483 Nucleotidyl transferase D5125_12415 PF02446 4-alpha-glucanotransferase D5125_12430 PF00664 ABC transporter transmembrane region D5125_12430 PF00005 ABC transporter D5125_12435 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D5125_12435 PF02896 PEP-utilising enzyme, TIM barrel domain D5125_12435 PF00391 PEP-utilising enzyme, mobile domain D5125_12440 PF03618 Kinase/pyrophosphorylase D5125_12445 PF02562 PhoH-like protein D5125_12445 PF13638 PIN domain D5125_12450 PF00578 AhpC/TSA family D5125_12455 PF01842 ACT domain D5125_12460 PF00701 Dihydrodipicolinate synthetase family D5125_12465 PF06804 NlpB/DapX lipoprotein D5125_12470 PF07669 Eco57I restriction-modification methylase D5125_12475 PF06616 BsuBI/PstI restriction endonuclease domain D5125_12475 PF17728 BsuBI/PstI restriction endonuclease HTH domain D5125_12480 PF05233 PHB accumulation regulatory domain D5125_12480 PF07879 PHB/PHA accumulation regulator DNA-binding domain D5125_12485 PF00108 Thiolase, N-terminal domain D5125_12485 PF02803 Thiolase, C-terminal domain D5125_12490 PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) D5125_12495 PF00561 alpha/beta hydrolase fold D5125_12500 PF01979 Amidohydrolase family D5125_12505 PF03471 Transporter associated domain D5125_12505 PF01595 Cyclin M transmembrane N-terminal domain D5125_12505 PF00571 CBS domain D5125_12510 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D5125_12515 PF09179 TilS substrate binding domain D5125_12515 PF11734 TilS substrate C-terminal domain D5125_12515 PF01171 PP-loop family D5125_12525 PF01336 OB-fold nucleic acid binding domain D5125_12525 PF00152 tRNA synthetases class II (D, K and N) D5125_12530 PF01578 Cytochrome C assembly protein D5125_12530 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D5125_12535 PF08534 Redoxin D5125_12540 PF03918 Cytochrome C biogenesis protein D5125_12555 PF18073 Rubredoxin metal binding domain D5125_12560 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D5125_12565 PF01747 ATP-sulfurylase D5125_12565 PF14306 PUA-like domain D5125_12580 PF00529 HlyD membrane-fusion protein of T1SS D5125_12580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_12585 PF00873 AcrB/AcrD/AcrF family D5125_12595 PF00550 Phosphopantetheine attachment site D5125_12595 PF00668 Condensation domain D5125_12595 PF00975 Thioesterase domain D5125_12595 PF13193 AMP-binding enzyme C-terminal domain D5125_12595 PF00501 AMP-binding enzyme D5125_12600 PF14765 Polyketide synthase dehydratase D5125_12600 PF00698 Acyl transferase domain D5125_12600 PF08240 Alcohol dehydrogenase GroES-like domain D5125_12600 PF16197 Ketoacyl-synthetase C-terminal extension D5125_12600 PF00109 Beta-ketoacyl synthase, N-terminal domain D5125_12600 PF00550 Phosphopantetheine attachment site D5125_12600 PF08659 KR domain D5125_12600 PF02801 Beta-ketoacyl synthase, C-terminal domain D5125_12605 PF16861 Carbamoyltransferase C-terminus D5125_12605 PF02543 Carbamoyltransferase N-terminus D5125_12615 PF03466 LysR substrate binding domain D5125_12615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_12620 PF04060 Putative Fe-S cluster D5125_12625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D5125_12625 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg D5125_12625 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase D5125_12625 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II D5125_12625 PF10371 Domain of unknown function D5125_12630 PF08534 Redoxin D5125_12635 PF13375 RnfC Barrel sandwich hybrid domain D5125_12635 PF13237 4Fe-4S dicluster domain D5125_12635 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D5125_12635 PF10531 SLBB domain D5125_12640 PF03116 NQR2, RnfD, RnfE family D5125_12645 PF04205 FMN-binding domain D5125_12650 PF02508 Rnf-Nqr subunit, membrane protein D5125_12655 PF02508 Rnf-Nqr subunit, membrane protein D5125_12665 PF00083 Sugar (and other) transporter D5125_12685 PF01850 PIN domain D5125_12690 PF09957 Bacterial antitoxin of type II TA system, VapB D5125_12735 PF00962 Adenosine/AMP deaminase D5125_12755 PF09827 CRISPR associated protein Cas2 D5125_12760 PF01867 CRISPR associated protein Cas1 D5125_12770 PF09827 CRISPR associated protein Cas2 D5125_12785 PF08240 Alcohol dehydrogenase GroES-like domain D5125_12785 PF00107 Zinc-binding dehydrogenase D5125_12800 PF01336 OB-fold nucleic acid binding domain D5125_12800 PF00152 tRNA synthetases class II (D, K and N) D5125_12800 PF02938 GAD domain D5125_12805 PF04381 Putative exonuclease, RdgC D5125_12810 PF01264 Chorismate synthase D5125_12815 PF12832 MFS_1 like family D5125_12830 PF00034 Cytochrome c D5125_12830 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP D5125_12830 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_12835 PF00330 Aconitase family (aconitate hydratase) D5125_12840 PF00694 Aconitase C-terminal domain D5125_12845 PF00180 Isocitrate/isopropylmalate dehydrogenase D5125_12850 PF01118 Semialdehyde dehydrogenase, NAD binding domain D5125_12850 PF02774 Semialdehyde dehydrogenase, dimerisation domain D5125_12855 PF02774 Semialdehyde dehydrogenase, dimerisation domain D5125_12855 PF01118 Semialdehyde dehydrogenase, NAD binding domain D5125_12865 PF01416 tRNA pseudouridine synthase D5125_12870 PF00563 EAL domain D5125_12870 PF04940 Sensors of blue-light using FAD D5125_12875 PF00512 His Kinase A (phospho-acceptor) domain D5125_12875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_12875 PF00072 Response regulator receiver domain D5125_12875 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_12875 PF00672 HAMP domain D5125_12875 PF01627 Hpt domain D5125_12880 PF00072 Response regulator receiver domain D5125_12975 PF00563 EAL domain D5125_12975 PF00990 Diguanylate cyclase, GGDEF domain D5125_12975 PF03707 Bacterial signalling protein N terminal repeat D5125_12980 PF00990 Diguanylate cyclase, GGDEF domain D5125_12980 PF13188 PAS domain D5125_12980 PF00563 EAL domain D5125_12980 PF03707 Bacterial signalling protein N terminal repeat D5125_12985 PF18818 Metallopeptidase superfamily domain D5125_12985 PF08401 Domain of unknown function (DUF1738) D5125_12985 PF13362 Toprim domain D5125_12990 PF04851 Type III restriction enzyme, res subunit D5125_12990 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_12990 PF00271 Helicase conserved C-terminal domain D5125_12990 PF08463 EcoEI R protein C-terminal D5125_12995 PF00271 Helicase conserved C-terminal domain D5125_12995 PF08463 EcoEI R protein C-terminal D5125_12995 PF04851 Type III restriction enzyme, res subunit D5125_12995 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_13025 PF04480 Protein of unknown function (DUF559) D5125_13040 PF01420 Type I restriction modification DNA specificity domain D5125_13065 PF03309 Type III pantothenate kinase D5125_13070 PF02237 Biotin protein ligase C terminal domain D5125_13070 PF03099 Biotin/lipoate A/B protein ligase family D5125_13085 PF08669 Glycine cleavage T-protein C-terminal barrel domain D5125_13085 PF01571 Aminomethyltransferase folate-binding domain D5125_13090 PF03707 Bacterial signalling protein N terminal repeat D5125_13090 PF00563 EAL domain D5125_13090 PF00990 Diguanylate cyclase, GGDEF domain D5125_13095 PF01339 CheB methylesterase D5125_13095 PF01739 CheR methyltransferase, SAM binding domain D5125_13095 PF03705 CheR methyltransferase, all-alpha domain D5125_13095 PF08448 PAS fold D5125_13105 PF01969 Protein of unknown function DUF111 D5125_13110 PF00916 Sulfate permease family D5125_13110 PF01740 STAS domain D5125_13125 PF02347 Glycine cleavage system P-protein D5125_13130 PF00294 pfkB family carbohydrate kinase D5125_13140 PF00186 Dihydrofolate reductase D5125_13150 PF06470 SMC proteins Flexible Hinge Domain D5125_13150 PF02463 RecF/RecN/SMC N terminal domain D5125_13155 PF04354 ZipA, C-terminal FtsZ-binding domain D5125_13160 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D5125_13160 PF01653 NAD-dependent DNA ligase adenylation domain D5125_13160 PF00533 BRCA1 C Terminus (BRCT) domain D5125_13160 PF12826 Helix-hairpin-helix motif D5125_13160 PF03120 NAD-dependent DNA ligase OB-fold domain D5125_13165 PF02347 Glycine cleavage system P-protein D5125_13170 PF00460 Flagella basal body rod protein D5125_13170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5125_13175 PF02107 Flagellar L-ring protein D5125_13180 PF02119 Flagellar P-ring protein D5125_13185 PF10135 Rod binding protein D5125_13185 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D5125_13190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5125_13190 PF00460 Flagella basal body rod protein D5125_13195 PF00669 Bacterial flagellin N-terminal helical region D5125_13210 PF00176 SNF2 family N-terminal domain D5125_13210 PF12137 RNA polymerase recycling family C-terminal D5125_13210 PF00271 Helicase conserved C-terminal domain D5125_13210 PF18339 RapA N-terminal Tudor like domain 1 D5125_13210 PF18337 RapA N-terminal Tudor like domain D5125_13215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_13215 PF00183 Hsp90 protein D5125_13220 PF13419 Haloacid dehalogenase-like hydrolase D5125_13225 PF01343 Peptidase family S49 D5125_13230 PF00072 Response regulator receiver domain D5125_13230 PF00486 Transcriptional regulatory protein, C terminal D5125_13235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_13235 PF00072 Response regulator receiver domain D5125_13235 PF00672 HAMP domain D5125_13235 PF01627 Hpt domain D5125_13235 PF00512 His Kinase A (phospho-acceptor) domain D5125_13235 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_13240 PF01814 Hemerythrin HHE cation binding domain D5125_13245 PF00106 short chain dehydrogenase D5125_13250 PF13419 Haloacid dehalogenase-like hydrolase D5125_13260 PF03379 CcmB protein D5125_13265 PF00005 ABC transporter D5125_13270 PF02261 Aspartate decarboxylase D5125_13280 PF00916 Sulfate permease family D5125_13280 PF01740 STAS domain D5125_13290 PF00814 Glycoprotease family D5125_13305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5125_13310 PF04348 LppC putative lipoprotein D5125_13315 PF02021 Uncharacterised protein family UPF0102 D5125_13320 PF13580 SIS domain D5125_13325 PF04972 BON domain D5125_13330 PF02913 FAD linked oxidases, C-terminal domain D5125_13330 PF01565 FAD binding domain D5125_13335 PF04055 Radical SAM superfamily D5125_13335 PF01938 TRAM domain D5125_13335 PF00919 Uncharacterized protein family UPF0004 D5125_13340 PF02562 PhoH-like protein D5125_13345 PF02130 Uncharacterized protein family UPF0054 D5125_13350 PF00795 Carbon-nitrogen hydrolase D5125_13370 PF01875 Memo-like protein D5125_13375 PF01871 AMMECR1 D5125_13375 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D5125_13390 PF02673 Bacitracin resistance protein BacA D5125_13395 PF14824 Sirohaem biosynthesis protein central D5125_13395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5125_13395 PF10414 Sirohaem synthase dimerisation region D5125_13400 PF00581 Rhodanese-like domain D5125_13405 PF01206 Sulfurtransferase TusA D5125_13410 PF13686 DsrE/DsrF/DrsH-like family D5125_13425 PF00581 Rhodanese-like domain D5125_13435 PF04204 Homoserine O-succinyltransferase D5125_13470 PF00672 HAMP domain D5125_13470 PF00512 His Kinase A (phospho-acceptor) domain D5125_13470 PF01627 Hpt domain D5125_13470 PF00072 Response regulator receiver domain D5125_13470 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_13470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_13475 PF08448 PAS fold D5125_13475 PF05231 MASE1 D5125_13475 PF00990 Diguanylate cyclase, GGDEF domain D5125_13475 PF00563 EAL domain D5125_13475 PF13426 PAS domain D5125_13475 PF08447 PAS fold D5125_13480 PF00072 Response regulator receiver domain D5125_13500 PF12804 MobA-like NTP transferase domain D5125_13505 PF17768 RecJ OB domain D5125_13505 PF02272 DHHA1 domain D5125_13505 PF01368 DHH family D5125_13510 PF04751 Protein of unknown function (DUF615) D5125_13515 PF02801 Beta-ketoacyl synthase, C-terminal domain D5125_13515 PF00109 Beta-ketoacyl synthase, N-terminal domain D5125_13515 PF16197 Ketoacyl-synthetase C-terminal extension D5125_13515 PF00668 Condensation domain D5125_13515 PF00698 Acyl transferase domain D5125_13515 PF00550 Phosphopantetheine attachment site D5125_13520 PF00550 Phosphopantetheine attachment site D5125_13520 PF00975 Thioesterase domain D5125_13520 PF13193 AMP-binding enzyme C-terminal domain D5125_13520 PF00668 Condensation domain D5125_13520 PF00501 AMP-binding enzyme D5125_13525 PF00550 Phosphopantetheine attachment site D5125_13525 PF00668 Condensation domain D5125_13525 PF13193 AMP-binding enzyme C-terminal domain D5125_13525 PF00501 AMP-binding enzyme D5125_13540 PF00211 Adenylate and Guanylate cyclase catalytic domain D5125_13555 PF02915 Rubrerythrin D5125_13585 PF00293 NUDIX domain D5125_13595 PF08328 Adenylosuccinate lyase C-terminal D5125_13595 PF00206 Lyase D5125_13600 PF13419 Haloacid dehalogenase-like hydrolase D5125_13620 PF01541 GIY-YIG catalytic domain D5125_13625 PF04055 Radical SAM superfamily D5125_13625 PF06969 HemN C-terminal domain D5125_13630 PF00486 Transcriptional regulatory protein, C terminal D5125_13630 PF00072 Response regulator receiver domain D5125_13640 PF00563 EAL domain D5125_13640 PF00990 Diguanylate cyclase, GGDEF domain D5125_13640 PF08448 PAS fold D5125_13650 PF00672 HAMP domain D5125_13650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_13650 PF00512 His Kinase A (phospho-acceptor) domain D5125_13650 PF01627 Hpt domain D5125_13650 PF00072 Response regulator receiver domain D5125_13650 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_13675 PF16199 Radical_SAM C-terminal domain D5125_13675 PF04055 Radical SAM superfamily D5125_13690 PF16177 Acetyl-coenzyme A synthetase N-terminus D5125_13690 PF13193 AMP-binding enzyme C-terminal domain D5125_13690 PF00501 AMP-binding enzyme D5125_13695 PF07733 Bacterial DNA polymerase III alpha NTPase domain D5125_13695 PF00929 Exonuclease D5125_13695 PF14579 Helix-hairpin-helix motif D5125_13695 PF02811 PHP domain D5125_13695 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D5125_13700 PF00478 IMP dehydrogenase / GMP reductase domain D5125_13700 PF00571 CBS domain D5125_13755 PF00474 Sodium:solute symporter family D5125_13775 PF00873 AcrB/AcrD/AcrF family D5125_13795 PF04172 LrgB-like family D5125_13800 PF00672 HAMP domain D5125_13800 PF00512 His Kinase A (phospho-acceptor) domain D5125_13800 PF01627 Hpt domain D5125_13800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_13800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_13800 PF00072 Response regulator receiver domain D5125_13810 PF00356 Bacterial regulatory proteins, lacI family D5125_13815 PF00990 Diguanylate cyclase, GGDEF domain D5125_13815 PF00563 EAL domain D5125_13815 PF03707 Bacterial signalling protein N terminal repeat D5125_13820 PF01618 MotA/TolQ/ExbB proton channel family D5125_13825 PF02472 Biopolymer transport protein ExbD/TolR D5125_13830 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D5125_13835 PF03966 Trm112p-like protein D5125_13840 PF02348 Cytidylyltransferase D5125_13845 PF12849 PBP superfamily domain D5125_13850 PF00528 Binding-protein-dependent transport system inner membrane component D5125_13855 PF00528 Binding-protein-dependent transport system inner membrane component D5125_13860 PF00005 ABC transporter D5125_13865 PF01895 PhoU domain D5125_13870 PF05175 Methyltransferase small domain D5125_13880 PF06969 HemN C-terminal domain D5125_13880 PF04055 Radical SAM superfamily D5125_13890 PF02926 THUMP domain D5125_13890 PF02568 Thiamine biosynthesis protein (ThiI) D5125_13895 PF02910 Fumarate reductase flavoprotein C-term D5125_13895 PF00890 FAD binding domain D5125_13900 PF04542 Sigma-70 region 2 D5125_13900 PF08281 Sigma-70, region 4 D5125_13920 PF13180 PDZ domain D5125_13925 PF00679 Elongation factor G C-terminus D5125_13925 PF06421 GTP-binding protein LepA C-terminus D5125_13925 PF00009 Elongation factor Tu GTP binding domain D5125_13930 PF10502 Signal peptidase, peptidase S26 D5125_13940 PF14622 Ribonuclease-III-like D5125_13940 PF00035 Double-stranded RNA binding motif D5125_13945 PF01926 50S ribosome-binding GTPase D5125_13945 PF07650 KH domain D5125_13950 PF11967 Recombination protein O N terminal D5125_13950 PF02565 Recombination protein O C terminal D5125_13955 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D5125_13965 PF08448 PAS fold D5125_13965 PF00990 Diguanylate cyclase, GGDEF domain D5125_13965 PF00563 EAL domain D5125_13975 PF04055 Radical SAM superfamily D5125_13980 PF01132 Elongation factor P (EF-P) OB domain D5125_13980 PF09285 Elongation factor P, C-terminal D5125_13980 PF08207 Elongation factor P (EF-P) KOW-like domain D5125_14020 PF03739 Lipopolysaccharide export system permease LptF/LptG D5125_14025 PF03739 Lipopolysaccharide export system permease LptF/LptG D5125_14035 PF01327 Polypeptide deformylase D5125_14050 PF01479 S4 domain D5125_14050 PF00849 RNA pseudouridylate synthase D5125_14055 PF13525 Outer membrane lipoprotein D5125_14065 PF07724 AAA domain (Cdc48 subfamily) D5125_14065 PF10431 C-terminal, D2-small domain, of ClpB protein D5125_14065 PF02861 Clp amino terminal domain, pathogenicity island component D5125_14065 PF00004 ATPase family associated with various cellular activities (AAA) D5125_14065 PF17871 AAA lid domain D5125_14080 PF00226 DnaJ domain D5125_14080 PF01556 DnaJ C terminal domain D5125_14080 PF00684 DnaJ central domain D5125_14085 PF08338 Domain of unknown function (DUF1731) D5125_14085 PF01370 NAD dependent epimerase/dehydratase family D5125_14095 PF07690 Major Facilitator Superfamily D5125_14100 PF00436 Single-strand binding protein family D5125_14115 PF03477 ATP cone domain D5125_14115 PF13597 Anaerobic ribonucleoside-triphosphate reductase D5125_14120 PF00563 EAL domain D5125_14120 PF03707 Bacterial signalling protein N terminal repeat D5125_14120 PF00990 Diguanylate cyclase, GGDEF domain D5125_14125 PF00873 AcrB/AcrD/AcrF family D5125_14130 PF13533 Biotin-lipoyl like D5125_14135 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D5125_14140 PF00291 Pyridoxal-phosphate dependent enzyme D5125_14145 PF00290 Tryptophan synthase alpha chain D5125_14150 PF01039 Carboxyl transferase domain D5125_14150 PF17848 Acetyl-coA carboxylase zinc finger domain D5125_14160 PF00313 'Cold-shock' DNA-binding domain D5125_14165 PF08245 Mur ligase middle domain D5125_14165 PF02875 Mur ligase family, glutamate ligase domain D5125_14180 PF02674 Colicin V production protein D5125_14185 PF00156 Phosphoribosyl transferase domain D5125_14190 PF01053 Cys/Met metabolism PLP-dependent enzyme D5125_14215 PF00773 RNB domain D5125_14220 PF16658 Class II release factor RF3, C-terminal domain D5125_14220 PF00009 Elongation factor Tu GTP binding domain D5125_14225 PF00571 CBS domain D5125_14225 PF03471 Transporter associated domain D5125_14225 PF01595 Cyclin M transmembrane N-terminal domain D5125_14230 PF00571 CBS domain D5125_14230 PF03471 Transporter associated domain D5125_14230 PF01595 Cyclin M transmembrane N-terminal domain D5125_14235 PF01008 Initiation factor 2 subunit family D5125_14240 PF03989 DNA gyrase C-terminal domain, beta-propeller D5125_14240 PF00521 DNA gyrase/topoisomerase IV, subunit A D5125_14245 PF00266 Aminotransferase class-V D5125_14250 PF01842 ACT domain D5125_14250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D5125_14250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D5125_14255 PF01817 Chorismate mutase type II D5125_14255 PF01842 ACT domain D5125_14255 PF00800 Prephenate dehydratase D5125_14260 PF03707 Bacterial signalling protein N terminal repeat D5125_14260 PF00990 Diguanylate cyclase, GGDEF domain D5125_14260 PF00563 EAL domain D5125_14270 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D5125_14270 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D5125_14285 PF06250 YhcG PDDEXK nuclease domain D5125_14285 PF17761 DUF1016 N-terminal domain D5125_14320 PF07963 Prokaryotic N-terminal methylation motif D5125_14320 PF00114 Pilin (bacterial filament) D5125_14340 PF05567 Neisseria PilC beta-propeller domain D5125_14345 PF00114 Pilin (bacterial filament) D5125_14345 PF07963 Prokaryotic N-terminal methylation motif D5125_14355 PF00732 GMC oxidoreductase D5125_14355 PF05199 GMC oxidoreductase D5125_14365 PF00512 His Kinase A (phospho-acceptor) domain D5125_14365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_14365 PF00072 Response regulator receiver domain D5125_14365 PF09308 LuxQ, periplasmic D5125_14370 PF03023 Lipid II flippase MurJ D5125_14380 PF01584 CheW-like domain D5125_14390 PF00271 Helicase conserved C-terminal domain D5125_14390 PF00270 DEAD/DEAH box helicase D5125_14405 PF03264 NapC/NirT cytochrome c family, N-terminal region D5125_14420 PF02223 Thymidylate kinase D5125_14425 PF09115 DNA polymerase III, delta subunit, C terminal D5125_14435 PF01026 TatD related DNase D5125_14440 PF03976 Polyphosphate kinase 2 (PPK2) D5125_14445 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_14450 PF01580 FtsK/SpoIIIE family D5125_14450 PF17854 FtsK alpha domain D5125_14450 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D5125_14450 PF09397 Ftsk gamma domain D5125_14455 PF03548 Outer membrane lipoprotein carrier protein LolA D5125_14460 PF00004 ATPase family associated with various cellular activities (AAA) D5125_14460 PF16193 AAA C-terminal domain D5125_14460 PF12002 MgsA AAA+ ATPase C terminal D5125_14465 PF00211 Adenylate and Guanylate cyclase catalytic domain D5125_14470 PF00005 ABC transporter D5125_14470 PF00664 ABC transporter transmembrane region D5125_14475 PF02661 Fic/DOC family D5125_14480 PF04976 DMSO reductase anchor subunit (DmsC) D5125_14485 PF01648 4'-phosphopantetheinyl transferase superfamily D5125_14535 PF00486 Transcriptional regulatory protein, C terminal D5125_14535 PF00072 Response regulator receiver domain D5125_14540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_14540 PF08918 PhoQ Sensor D5125_14545 PF02082 Transcriptional regulator D5125_14555 PF00575 S1 RNA binding domain D5125_14555 PF17876 Cold shock domain D5125_14555 PF08461 Ribonuclease R winged-helix domain D5125_14555 PF08206 Ribonuclease B OB domain D5125_14555 PF00773 RNB domain D5125_14560 PF00588 SpoU rRNA Methylase family D5125_14560 PF08032 RNA 2'-O ribose methyltransferase substrate binding D5125_14565 PF02545 Maf-like protein D5125_14575 PF01783 Ribosomal L32p protein family D5125_14580 PF02504 Fatty acid synthesis protein D5125_14585 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D5125_14585 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D5125_14590 PF00698 Acyl transferase domain D5125_14600 PF00550 Phosphopantetheine attachment site D5125_14605 PF02801 Beta-ketoacyl synthase, C-terminal domain D5125_14605 PF00109 Beta-ketoacyl synthase, N-terminal domain D5125_14610 PF01063 Amino-transferase class IV D5125_14615 PF02618 YceG-like family D5125_14630 PF00596 Class II Aldolase and Adducin N-terminal domain D5125_14635 PF00990 Diguanylate cyclase, GGDEF domain D5125_14635 PF00563 EAL domain D5125_14635 PF03707 Bacterial signalling protein N terminal repeat D5125_14640 PF13545 Crp-like helix-turn-helix domain D5125_14640 PF00027 Cyclic nucleotide-binding domain D5125_14645 PF00465 Iron-containing alcohol dehydrogenase D5125_14690 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system D5125_14725 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5125_14820 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system D5125_14870 PF04221 RelB antitoxin D5125_14895 PF16363 GDP-mannose 4,6 dehydratase D5125_14920 PF00005 ABC transporter D5125_14955 PF00005 ABC transporter D5125_14955 PF00664 ABC transporter transmembrane region D5125_15045 PF08241 Methyltransferase domain D5125_15050 PF16363 GDP-mannose 4,6 dehydratase D5125_15055 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5125_15075 PF01934 Protein of unknown function DUF86 D5125_15100 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_15115 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_15140 PF00534 Glycosyl transferases group 1 D5125_15140 PF13439 Glycosyltransferase Family 4 D5125_15145 PF02824 TGS domain D5125_15145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D5125_15145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D5125_15145 PF03129 Anticodon binding domain D5125_15150 PF05198 Translation initiation factor IF-3, N-terminal domain D5125_15150 PF00707 Translation initiation factor IF-3, C-terminal domain D5125_15155 PF01632 Ribosomal protein L35 D5125_15160 PF00453 Ribosomal protein L20 D5125_15165 PF01409 tRNA synthetases class II core domain (F) D5125_15165 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D5125_15170 PF01588 Putative tRNA binding domain D5125_15170 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D5125_15170 PF03147 Ferredoxin-fold anticodon binding domain D5125_15170 PF03484 tRNA synthetase B5 domain D5125_15170 PF03483 B3/4 domain D5125_15175 PF00216 Bacterial DNA-binding protein D5125_15180 PF13411 MerR HTH family regulatory protein D5125_15190 PF09820 Predicted AAA-ATPase D5125_15190 PF08011 PD-(D/E)XK nuclease superfamily D5125_15195 PF00698 Acyl transferase domain D5125_15220 PF04403 Paraquat-inducible protein A D5125_15225 PF04403 Paraquat-inducible protein A D5125_15230 PF02470 MlaD protein D5125_15235 PF00109 Beta-ketoacyl synthase, N-terminal domain D5125_15235 PF16197 Ketoacyl-synthetase C-terminal extension D5125_15235 PF00501 AMP-binding enzyme D5125_15235 PF13193 AMP-binding enzyme C-terminal domain D5125_15235 PF00668 Condensation domain D5125_15235 PF14765 Polyketide synthase dehydratase D5125_15235 PF00550 Phosphopantetheine attachment site D5125_15235 PF02801 Beta-ketoacyl synthase, C-terminal domain D5125_15235 PF08659 KR domain D5125_15240 PF13193 AMP-binding enzyme C-terminal domain D5125_15240 PF14765 Polyketide synthase dehydratase D5125_15240 PF00550 Phosphopantetheine attachment site D5125_15240 PF08659 KR domain D5125_15240 PF00501 AMP-binding enzyme D5125_15240 PF00668 Condensation domain D5125_15240 PF02801 Beta-ketoacyl synthase, C-terminal domain D5125_15240 PF16197 Ketoacyl-synthetase C-terminal extension D5125_15240 PF00109 Beta-ketoacyl synthase, N-terminal domain D5125_15255 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_15255 PF00271 Helicase conserved C-terminal domain D5125_15255 PF08463 EcoEI R protein C-terminal D5125_15255 PF04851 Type III restriction enzyme, res subunit D5125_15265 PF02384 N-6 DNA Methylase D5125_15265 PF12161 HsdM N-terminal domain D5125_15275 PF01420 Type I restriction modification DNA specificity domain D5125_15280 PF02661 Fic/DOC family D5125_15280 PF13784 Fic/DOC family N-terminal D5125_15370 PF13166 AAA domain D5125_15375 PF00149 Calcineurin-like phosphoesterase D5125_15375 PF12320 Type 5 capsule protein repressor C-terminal domain D5125_15380 PF13476 AAA domain D5125_15390 PF13193 AMP-binding enzyme C-terminal domain D5125_15390 PF00668 Condensation domain D5125_15390 PF00550 Phosphopantetheine attachment site D5125_15390 PF00501 AMP-binding enzyme D5125_15390 PF00975 Thioesterase domain D5125_15395 PF02423 Ornithine cyclodeaminase/mu-crystallin family D5125_15405 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family D5125_15415 PF02770 Acyl-CoA dehydrogenase, middle domain D5125_15415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5125_15415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5125_15425 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D5125_15425 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D5125_15460 PF03853 YjeF-related protein N-terminus D5125_15460 PF01256 Carbohydrate kinase D5125_15465 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D5125_15470 PF11741 AMIN domain D5125_15470 PF01520 N-acetylmuramoyl-L-alanine amidase D5125_15490 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D5125_15490 PF00391 PEP-utilising enzyme, mobile domain D5125_15490 PF02896 PEP-utilising enzyme, TIM barrel domain D5125_15495 PF01297 Zinc-uptake complex component A periplasmic D5125_15505 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system D5125_15510 PF00005 ABC transporter D5125_15515 PF00950 ABC 3 transport family D5125_15525 PF03621 MbtH-like protein D5125_15530 PF00873 AcrB/AcrD/AcrF family D5125_15535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_15540 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_15540 PF00672 HAMP domain D5125_15540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_15540 PF00512 His Kinase A (phospho-acceptor) domain D5125_15540 PF01627 Hpt domain D5125_15540 PF00072 Response regulator receiver domain D5125_15545 PF04255 Protein of unknown function (DUF433) D5125_15550 PF00005 ABC transporter D5125_15555 PF01061 ABC-2 type transporter D5125_15565 PF00128 Alpha amylase, catalytic domain D5125_15575 PF05116 Sucrose-6F-phosphate phosphohydrolase D5125_15575 PF05166 YcgL domain D5125_15580 PF00862 Sucrose synthase D5125_15580 PF00534 Glycosyl transferases group 1 D5125_15595 PF17243 POTRA domain TamA domain 1 D5125_15595 PF01103 Surface antigen D5125_15600 PF00285 Citrate synthase, C-terminal domain D5125_15610 PF16177 Acetyl-coenzyme A synthetase N-terminus D5125_15610 PF00501 AMP-binding enzyme D5125_15610 PF13193 AMP-binding enzyme C-terminal domain D5125_15615 PF00005 ABC transporter D5125_15615 PF00664 ABC transporter transmembrane region D5125_15625 PF01272 Transcription elongation factor, GreA/GreB, C-term D5125_15625 PF03449 Transcription elongation factor, N-terminal D5125_15630 PF00291 Pyridoxal-phosphate dependent enzyme D5125_15635 PF00483 Nucleotidyl transferase D5125_15640 PF00155 Aminotransferase class I and II D5125_15645 PF02153 Prephenate dehydrogenase D5125_15650 PF08323 Starch synthase catalytic domain D5125_15650 PF00534 Glycosyl transferases group 1 D5125_15655 PF04303 PrpF protein D5125_15660 PF00694 Aconitase C-terminal domain D5125_15660 PF00330 Aconitase family (aconitate hydratase) D5125_15665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_15665 PF00672 HAMP domain D5125_15685 PF00092 von Willebrand factor type A domain D5125_15700 PF07728 AAA domain (dynein-related subfamily) D5125_15700 PF08406 CbbQ/NirQ/NorQ C-terminal D5125_15710 PF00510 Cytochrome c oxidase subunit III D5125_15715 PF00115 Cytochrome C and Quinol oxidase polypeptide I D5125_15720 PF00034 Cytochrome c D5125_15760 PF02374 Anion-transporting ATPase D5125_15760 PF17886 HSP20-like domain found in ArsA D5125_15770 PF00176 SNF2 family N-terminal domain D5125_15770 PF00271 Helicase conserved C-terminal domain D5125_15775 PF05190 MutS family domain IV D5125_15775 PF05188 MutS domain II D5125_15775 PF01624 MutS domain I D5125_15775 PF05192 MutS domain III D5125_15775 PF00488 MutS domain V D5125_15780 PF07733 Bacterial DNA polymerase III alpha NTPase domain D5125_15780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D5125_15780 PF14579 Helix-hairpin-helix motif D5125_15780 PF01336 OB-fold nucleic acid binding domain D5125_15780 PF02811 PHP domain D5125_15785 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_15790 PF00749 tRNA synthetases class I (E and Q), catalytic domain D5125_15795 PF00749 tRNA synthetases class I (E and Q), catalytic domain D5125_15795 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D5125_15810 PF09820 Predicted AAA-ATPase D5125_15810 PF08011 PD-(D/E)XK nuclease superfamily D5125_15840 PF00486 Transcriptional regulatory protein, C terminal D5125_15840 PF00072 Response regulator receiver domain D5125_15855 PF08011 PD-(D/E)XK nuclease superfamily D5125_15855 PF09820 Predicted AAA-ATPase D5125_15860 PF00990 Diguanylate cyclase, GGDEF domain D5125_15860 PF00563 EAL domain D5125_15860 PF03707 Bacterial signalling protein N terminal repeat D5125_15870 PF00072 Response regulator receiver domain D5125_15870 PF00990 Diguanylate cyclase, GGDEF domain D5125_15885 PF16363 GDP-mannose 4,6 dehydratase D5125_15890 PF04321 RmlD substrate binding domain D5125_15895 PF00483 Nucleotidyl transferase D5125_15900 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D5125_15915 PF05698 Bacterial trigger factor protein (TF) C-terminus D5125_15915 PF05697 Bacterial trigger factor protein (TF) D5125_15915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D5125_15920 PF00574 Clp protease D5125_15925 PF07724 AAA domain (Cdc48 subfamily) D5125_15925 PF06689 ClpX C4-type zinc finger D5125_15925 PF10431 C-terminal, D2-small domain, of ClpB protein D5125_15930 PF00004 ATPase family associated with various cellular activities (AAA) D5125_15930 PF05362 Lon protease (S16) C-terminal proteolytic domain D5125_15930 PF02190 ATP-dependent protease La (LON) substrate-binding domain D5125_15935 PF00216 Bacterial DNA-binding protein D5125_15950 PF13145 PPIC-type PPIASE domain D5125_15955 PF13380 CoA binding domain D5125_15960 PF01618 MotA/TolQ/ExbB proton channel family D5125_15965 PF13677 Membrane MotB of proton-channel complex MotA/MotB D5125_15965 PF00691 OmpA family D5125_15970 PF04376 Arginine-tRNA-protein transferase, N terminus D5125_15970 PF04377 Arginine-tRNA-protein transferase, C terminus D5125_15975 PF00563 EAL domain D5125_15975 PF00990 Diguanylate cyclase, GGDEF domain D5125_15975 PF03707 Bacterial signalling protein N terminal repeat D5125_15985 PF01479 S4 domain D5125_15990 PF00462 Glutaredoxin D5125_15995 PF01433 Peptidase family M1 domain D5125_15995 PF11940 Domain of unknown function (DUF3458) Ig-like fold D5125_15995 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D5125_16000 PF01618 MotA/TolQ/ExbB proton channel family D5125_16005 PF00691 OmpA family D5125_16005 PF13677 Membrane MotB of proton-channel complex MotA/MotB D5125_16015 PF00360 Phytochrome region D5125_16015 PF00990 Diguanylate cyclase, GGDEF domain D5125_16015 PF01590 GAF domain D5125_16015 PF00563 EAL domain D5125_16020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D5125_16025 PF02224 Cytidylate kinase D5125_16030 PF00575 S1 RNA binding domain D5125_16035 PF00216 Bacterial DNA-binding protein D5125_16045 PF13649 Methyltransferase domain D5125_16050 PF08003 Protein of unknown function (DUF1698) D5125_16055 PF04715 Anthranilate synthase component I, N terminal region D5125_16055 PF00425 chorismate binding enzyme D5125_16060 PF00202 Aminotransferase class-III D5125_16070 PF00291 Pyridoxal-phosphate dependent enzyme D5125_16075 PF05958 tRNA (Uracil-5-)-methyltransferase D5125_16085 PF03734 L,D-transpeptidase catalytic domain D5125_16085 PF17969 L,D-transpeptidase C-terminal domain D5125_16095 PF00933 Glycosyl hydrolase family 3 N terminal domain D5125_16100 PF00156 Phosphoribosyl transferase domain D5125_16105 PF00578 AhpC/TSA family D5125_16105 PF10417 C-terminal domain of 1-Cys peroxiredoxin D5125_16110 PF01048 Phosphorylase superfamily D5125_16140 PF01435 Peptidase family M48 D5125_16160 PF01142 tRNA pseudouridine synthase D (TruD) D5125_16220 PF02542 YgbB family D5125_16225 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D5125_16230 PF04977 Septum formation initiator D5125_16235 PF03952 Enolase, N-terminal domain D5125_16235 PF00113 Enolase, C-terminal TIM barrel domain D5125_16240 PF00793 DAHP synthetase I family D5125_16245 PF00117 Glutamine amidotransferase class-I D5125_16245 PF06418 CTP synthase N-terminus D5125_16255 PF00583 Acetyltransferase (GNAT) family D5125_16265 PF03840 Preprotein translocase SecG subunit D5125_16270 PF00121 Triosephosphate isomerase D5125_16285 PF08482 ATP-dependent helicase C-terminal D5125_16285 PF00271 Helicase conserved C-terminal domain D5125_16285 PF04408 Helicase associated domain (HA2) D5125_16285 PF00270 DEAD/DEAH box helicase D5125_16290 PF01053 Cys/Met metabolism PLP-dependent enzyme D5125_16295 PF07687 Peptidase dimerisation domain D5125_16295 PF01546 Peptidase family M20/M25/M40 D5125_16315 PF13181 Tetratricopeptide repeat D5125_16315 PF01435 Peptidase family M48 D5125_16340 PF03707 Bacterial signalling protein N terminal repeat D5125_16340 PF00990 Diguanylate cyclase, GGDEF domain D5125_16340 PF00563 EAL domain D5125_16345 PF07689 KaiB domain D5125_16350 PF06745 KaiC D5125_16365 PF16870 2-oxoglutarate dehydrogenase C-terminal D5125_16365 PF02779 Transketolase, pyrimidine binding domain D5125_16365 PF16078 2-oxoglutarate dehydrogenase N-terminus D5125_16365 PF00676 Dehydrogenase E1 component D5125_16370 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D5125_16370 PF02817 e3 binding domain D5125_16370 PF00364 Biotin-requiring enzyme D5125_16375 PF05683 Fumarase C-terminus D5125_16375 PF05681 Fumarate hydratase (Fumerase) D5125_16380 PF01475 Ferric uptake regulator family D5125_16385 PF04355 SmpA / OmlA family D5125_16390 PF00011 Hsp20/alpha crystallin family D5125_16395 PF00011 Hsp20/alpha crystallin family D5125_16400 PF01551 Peptidase family M23 D5125_16400 PF10145 Phage-related minor tail protein D5125_16400 PF01464 Transglycosylase SLT domain D5125_16405 PF02810 SEC-C motif D5125_16420 PF03649 Uncharacterised protein family (UPF0014) D5125_16425 PF00005 ABC transporter D5125_16430 PF02390 Putative methyltransferase D5125_16435 PF05690 Thiazole biosynthesis protein ThiG D5125_16445 PF00753 Metallo-beta-lactamase superfamily D5125_16460 PF12729 Four helix bundle sensory module for signal transduction D5125_16460 PF00672 HAMP domain D5125_16460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_16465 PF02464 Competence-damaged protein D5125_16480 PF04279 Intracellular septation protein A D5125_16485 PF03795 YCII-related domain D5125_16490 PF00639 PPIC-type PPIASE domain D5125_16495 PF08331 Domain of unknown function (DUF1730) D5125_16510 PF00270 DEAD/DEAH box helicase D5125_16510 PF11898 Domain of unknown function (DUF3418) D5125_16510 PF04408 Helicase associated domain (HA2) D5125_16510 PF00271 Helicase conserved C-terminal domain D5125_16510 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D5125_16535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D5125_16535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D5125_16535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D5125_16535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D5125_16540 PF13098 Thioredoxin-like domain D5125_16540 PF10411 Disulfide bond isomerase protein N-terminus D5125_16545 PF04461 Protein of unknown function (DUF520) D5125_16550 PF00589 Phage integrase family D5125_16550 PF02899 Phage integrase, N-terminal SAM-like domain D5125_16555 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D5125_16555 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D5125_16560 PF03692 Putative zinc- or iron-chelating domain D5125_16570 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D5125_16570 PF02769 AIR synthase related protein, C-terminal domain D5125_16570 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D5125_16580 PF00106 short chain dehydrogenase D5125_16585 PF13607 Succinyl-CoA ligase like flavodoxin domain D5125_16585 PF13380 CoA binding domain D5125_16585 PF00583 Acetyltransferase (GNAT) family D5125_16590 PF00850 Histone deacetylase domain D5125_16605 PF00092 von Willebrand factor type A domain D5125_16615 PF07728 AAA domain (dynein-related subfamily) D5125_16615 PF08406 CbbQ/NirQ/NorQ C-terminal D5125_16620 PF00101 Ribulose bisphosphate carboxylase, small chain D5125_16625 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain D5125_16625 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain D5125_16635 PF00380 Ribosomal protein S9/S16 D5125_16640 PF00572 Ribosomal protein L13 D5125_16650 PF13183 4Fe-4S dicluster domain D5125_16650 PF02754 Cysteine-rich domain D5125_16660 PF03232 Ubiquinone biosynthesis protein COQ7 D5125_16665 PF02566 OsmC-like protein D5125_16670 PF00027 Cyclic nucleotide-binding domain D5125_16670 PF13545 Crp-like helix-turn-helix domain D5125_16680 PF00069 Protein kinase domain D5125_16680 PF03793 PASTA domain D5125_16685 PF01226 Formate/nitrite transporter D5125_16690 PF00355 Rieske [2Fe-2S] domain D5125_16695 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D5125_16695 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D5125_16695 PF04324 BFD-like [2Fe-2S] binding domain D5125_16695 PF18267 Rubredoxin NAD+ reductase C-terminal domain D5125_16695 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_16700 PF13545 Crp-like helix-turn-helix domain D5125_16700 PF00027 Cyclic nucleotide-binding domain D5125_16710 PF05973 Phage derived protein Gp49-like (DUF891) D5125_16715 PF00218 Indole-3-glycerol phosphate synthase D5125_16720 PF12034 Domain of unknown function (DUF3520) D5125_16720 PF12450 von Willebrand factor D5125_16720 PF00092 von Willebrand factor type A domain D5125_16725 PF08281 Sigma-70, region 4 D5125_16725 PF04542 Sigma-70 region 2 D5125_16735 PF00591 Glycosyl transferase family, a/b domain D5125_16735 PF02885 Glycosyl transferase family, helical bundle domain D5125_16740 PF01381 Helix-turn-helix D5125_16745 PF00117 Glutamine amidotransferase class-I D5125_16750 PF01432 Peptidase family M3 D5125_16765 PF18074 Primosomal protein N C-terminal domain D5125_16765 PF00271 Helicase conserved C-terminal domain D5125_16765 PF00270 DEAD/DEAH box helicase D5125_16765 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D5125_16765 PF17764 3′ DNA-binding domain (3′BD) D5125_16770 PF05736 OprF membrane domain D5125_16770 PF00691 OmpA family D5125_16775 PF00750 tRNA synthetases class I (R) D5125_16775 PF05746 DALR anticodon binding domain D5125_16775 PF03485 Arginyl tRNA synthetase N terminal domain D5125_16790 PF03707 Bacterial signalling protein N terminal repeat D5125_16790 PF00990 Diguanylate cyclase, GGDEF domain D5125_16790 PF00563 EAL domain D5125_16795 PF00398 Ribosomal RNA adenine dimethylase D5125_16805 PF00342 Phosphoglucose isomerase D5125_16815 PF01479 S4 domain D5125_16815 PF00849 RNA pseudouridylate synthase D5125_16820 PF04079 Segregation and condensation complex subunit ScpB D5125_16825 PF07690 Major Facilitator Superfamily D5125_16835 PF02120 Flagellar hook-length control protein FliK D5125_16840 PF01113 Dihydrodipicolinate reductase, N-terminus D5125_16840 PF05173 Dihydrodipicolinate reductase, C-terminus D5125_16845 PF01556 DnaJ C terminal domain D5125_16845 PF00226 DnaJ domain D5125_16845 PF00684 DnaJ central domain D5125_16850 PF00012 Hsp70 protein D5125_16855 PF01025 GrpE D5125_16860 PF12706 Beta-lactamase superfamily domain D5125_16860 PF00753 Metallo-beta-lactamase superfamily D5125_16865 PF08668 HDOD domain D5125_16870 PF00004 ATPase family associated with various cellular activities (AAA) D5125_16870 PF17862 AAA+ lid domain D5125_16870 PF06480 FtsH Extracellular D5125_16870 PF01434 Peptidase family M41 D5125_16880 PF02599 Global regulator protein family D5125_16885 PF13840 ACT domain D5125_16885 PF01842 ACT domain D5125_16885 PF00696 Amino acid kinase family D5125_16915 PF10609 NUBPL iron-transfer P-loop NTPase D5125_16920 PF09334 tRNA synthetases class I (M) D5125_16920 PF01588 Putative tRNA binding domain D5125_16925 PF02525 Flavodoxin-like fold D5125_16930 PF02254 TrkA-N domain D5125_16930 PF00999 Sodium/hydrogen exchanger family D5125_16935 PF01169 Uncharacterized protein family UPF0016