A359_00010 SM00382 ATPases associated with a variety of cellular activities A359_00010 SM00760 Bacterial dnaA protein helix-turn-helix domain A359_00020 SM00480 DNA polymerase III beta subunit A359_00030 SM00387 Histidine kinase-like ATPases A359_00030 SM00433 TopoisomeraseII A359_00070 SM00014 Acid phosphatase homologues A359_00100 SM00463 Small MutS-related domain A359_00320 SM01323 A359_00320 A359_00360 SM00927 DNA mismatch repair enzyme MutH A359_00400 SM00363 S4 RNA-binding domain A359_00550 SM00878 Biotin carboxylase C-terminal domain A359_00560 SM00644 A359_00560 A359_00610 SM00357 Cold shock protein domain A359_00660 SM00357 Cold shock protein domain A359_00660 SM00382 ATPases associated with a variety of cellular activities A359_00660 SM00959 Rho termination factor, N-terminal domain A359_00670 SM00861 Transketolase, pyrimidine binding domain A359_00730 SM00450 Rhodanese Homology Domain A359_00770 SM00382 ATPases associated with a variety of cellular activities A359_00770 SM01086 C-terminal, D2-small domain, of ClpB protein A359_00830 SM00729 Elongator protein 3, MiaB family, Radical SAM A359_00830 SM00876 Biotin and Thiamin Synthesis associated domain A359_00870 SM01211 A359_00870 A359_00900 SM00487 DEAD-like helicases superfamily A359_00900 SM00490 helicase superfamily c-terminal domain A359_00970 SM00487 DEAD-like helicases superfamily A359_00970 SM00490 helicase superfamily c-terminal domain A359_01120 SM00479 A359_01120 A359_01140 SM00518 AP endonuclease family 2 A359_01210 SM00387 Histidine kinase-like ATPases A359_01270 SM00434 DNA Topoisomerase IV A359_01290 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain A359_01290 SM00437 Bacterial DNA topoisomerase I DNA-binding domain A359_01290 SM00493 A359_01290 A359_01310 SM00977 TilS substrate C-terminal domain A359_01320 SM00363 S4 RNA-binding domain A359_01340 SM00411 bacterial (prokaryotic) histone like domain A359_01350 SM00316 Ribosomal protein S1-like RNA-binding domain A359_01540 SM01192 A359_01540 A359_01540 SM01193 A359_01540 A359_01570 SM00954 Region found in RelA / SpoT proteins A359_01590 SM00155 Phospholipase D. Active site motifs. A359_01600 SM00411 bacterial (prokaryotic) histone like domain A359_01610 SM00873 B3/4 domain A359_01610 SM00874 tRNA synthetase B5 domain A359_01610 SM00896 Ferredoxin-fold anticodon binding domain A359_01660 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain A359_01690 SM00479 A359_01690 A359_01720 SM00849 Metallo-beta-lactamase superfamily A359_01730 SM01005 Alanine racemase, C-terminal domain A359_01760 SM00836 DALR anticodon binding domain A359_01760 SM01016 Arginyl tRNA synthetase N terminal dom A359_01780 SM00984 UDP binding domain A359_01830 SM00479 A359_01830 A359_01850 SM00347 helix_turn_helix multiple antibiotic resistance protein A359_01970 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family A359_02060 SM00478 endonuclease III A359_02060 SM00525 A359_02060 A359_02140 SM00849 Metallo-beta-lactamase superfamily A359_02190 SM00448 cheY-homologous receiver domain A359_02190 SM00862 Transcriptional regulatory protein, C terminal A359_02210 SM00971 Serine acetyltransferase, N-terminal A359_02260 SM00450 Rhodanese Homology Domain A359_02330 SM01350 A359_02330 A359_02390 SM00534 ATPase domain of DNA mismatch repair MUTS family A359_02480 SM00855 Phosphoglycerate mutase family A359_02560 SM00937 A359_02560 A359_02740 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. A359_02740 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. A359_02750 SM00649 Ribosomal protein L11/L12 A359_02800 SM00663 RNA polymerase I subunit A N-terminus A359_02860 SM00729 Elongator protein 3, MiaB family, Radical SAM A359_03030 SM00382 ATPases associated with a variety of cellular activities A359_03090 SM00662 RNA polymerases D A359_03100 SM00363 S4 RNA-binding domain A359_03100 SM01390 A359_03100 A359_03250 SM01374 A359_03250 A359_03290 SM00322 K homology RNA-binding domain A359_03320 SM01382 A359_03320 A359_03320 SM01383 A359_03320 A359_03360 SM01403 A359_03360 A359_03390 SM01004 Delta-aminolevulinic acid dehydratase A359_03480 SM00957 SecA DEAD-like domain A359_03480 SM00958 SecA preprotein cross-linking domain A359_03520 SM00864 Tubulin/FtsZ family, GTPase domain A359_03520 SM00865 Tubulin/FtsZ family, C-terminal domain A359_03530 SM00842 Cell division protein FtsA A359_03680 SM00278 Helix-hairpin-helix DNA-binding motif class 1 A359_03680 SM00465 GIY-YIG type nucleases (URI domain) A359_03730 SM00382 ATPases associated with a variety of cellular activities A359_03790 SM01091 Transporter associated domain A359_03840 SM00947 Carbonic anhydrase A359_03860 SM00861 Transketolase, pyrimidine binding domain A359_03900 SM00357 Cold shock protein domain A359_04040 SM00490 helicase superfamily c-terminal domain A359_04080 SM00838 Elongation factor G C-terminus A359_04080 SM00889 Elongation factor G, domain IV A359_04140 SM00986 Uracil DNA glycosylase superfamily A359_04140 SM00987 UreE urease accessory protein, C-terminal domain A359_04370 SM00357 Cold shock protein domain A359_04370 SM00955 A359_04370 A359_04410 SM00859 Semialdehyde dehydrogenase, NAD binding domain A359_04540 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A359_04600 SM01400 A359_04600 A359_04670 SM00798 AICARFT/IMPCHase bienzyme A359_04670 SM00851 MGS-like domain A359_04680 SM01209 A359_04680 A359_04680 SM01210 A359_04680 A359_04730 SM00841 Elongation factor P, C-terminal A359_04730 SM01185 A359_04730 A359_04820 SM00244 prohibitin homologues A359_04830 SM00244 prohibitin homologues A359_04840 SM00788 Adenylosuccinate synthetase A359_04850 SM00316 Ribosomal protein S1-like RNA-binding domain A359_04850 SM00357 Cold shock protein domain A359_04850 SM00955 A359_04850 A359_04860 SM00967 RNA 2'-O ribose methyltransferase substrate binding A359_04900 SM00382 ATPases associated with a variety of cellular activities A359_04950 SM00316 Ribosomal protein S1-like RNA-binding domain A359_04990 SM00100 Cyclic nucleotide-monophosphate binding domain A359_04990 SM00419 helix_turn_helix, cAMP Regulatory protein A359_05040 SM00382 ATPases associated with a variety of cellular activities A359_05080 SM00278 Helix-hairpin-helix DNA-binding motif class 1 A359_05080 SM00292 breast cancer carboxy-terminal domain A359_05080 SM00532 Ligase N family A359_05090 SM00771 ZipA, C-terminal domain (FtsZ-binding) A359_05100 SM00992 Hemimethylated DNA-binding protein YccV like A359_05110 SM00749 bacterial OsmY and nodulation domain A359_05170 SM01387 A359_05170 A359_05180 SM00316 Ribosomal protein S1-like RNA-binding domain A359_05180 SM00322 K homology RNA-binding domain A359_05190 SM00487 DEAD-like helicases superfamily A359_05190 SM00490 helicase superfamily c-terminal domain A359_05280 SM01011 Aminopeptidase P, N-terminal domain A359_05370 SM00271 DnaJ molecular chaperone homology domain A359_05410 SM00904 Riboflavin kinase A359_05470 SM00271 DnaJ molecular chaperone homology domain A359_05510 SM00650 Ribosomal RNA adenine dimethylases A359_05550 SM00851 MGS-like domain A359_05550 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain A359_05560 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain A359_05690 SM00155 Phospholipase D. Active site motifs. A359_05870 SM00926 Molybdopterin oxidoreductase Fe4S4 domain A359_05870 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A359_05880 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A359_05940 SM00382 ATPases associated with a variety of cellular activities A359_05940 SM01086 C-terminal, D2-small domain, of ClpB protein A359_05980 SM00316 Ribosomal protein S1-like RNA-binding domain A359_06100 SM00883 Chaperonin 10 Kd subunit A359_06180 SM00387 Histidine kinase-like ATPases A359_06210 SM00382 ATPases associated with a variety of cellular activities A359_06260 SM00840 A359_06260 A359_06290 SM01001 AIR carboxylase A359_06400 SM00400 zinc finger A359_06400 SM00493 A359_06400 A359_06400 SM00766 DNA primase DnaG DnaB-binding A359_06430 SM00382 ATPases associated with a variety of cellular activities A359_06500 SM01228 A359_06500 A359_06540 SM01130 A359_06540 A359_06620 SM00563 Phosphate acyltransferases A359_06630 SM00434 DNA Topoisomerase IV A359_06640 SM00563 Phosphate acyltransferases A359_06740 SM00905 Dihydroneopterin aldolase A359_06800 SM00072 Guanylate kinase homologues. A359_06810 SM01409 A359_06810 A359_06820 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. A359_06820 SM00954 Region found in RelA / SpoT proteins A359_07010 SM00382 ATPases associated with a variety of cellular activities A359_07240 SM00487 DEAD-like helicases superfamily A359_07240 SM00490 helicase superfamily c-terminal domain A359_07240 SM00982 A359_07240 A359_07240 SM01058 CarD-like/TRCF domain A359_07260 SM00382 ATPases associated with a variety of cellular activities A359_07310 SM00382 ATPases associated with a variety of cellular activities A359_07620 SM00387 Histidine kinase-like ATPases A359_07620 SM00433 TopoisomeraseII A359_07720 SM00382 ATPases associated with a variety of cellular activities A359_07720 SM00962 SRP54-type protein, GTPase domain A359_07720 SM00963 SRP54-type protein, helical bundle domain A359_07760 SM00358 Double-stranded RNA binding motif A359_07760 SM00535 Ribonuclease III family A359_07810 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A359_07890 SM00316 Ribosomal protein S1-like RNA-binding domain A359_07940 SM00487 DEAD-like helicases superfamily A359_07940 SM00490 helicase superfamily c-terminal domain A359_07960 SM00116 Domain in cystathionine beta-synthase and other proteins. A359_07960 SM01240 A359_07960 A359_08080 SM00382 ATPases associated with a variety of cellular activities A359_08290 SM00822 A359_08290 A359_08300 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. A359_08380 SM00363 S4 RNA-binding domain A359_08470 SM00564 beta-propeller repeat A359_08500 SM00530 Helix-turn-helix XRE-family like proteins A359_08530 SM00729 Elongator protein 3, MiaB family, Radical SAM A359_08570 SM00478 endonuclease III A359_08570 SM00525 A359_08570 A359_08670 SM00825 Beta-ketoacyl synthase A359_08780 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. A359_08830 SM00382 ATPases associated with a variety of cellular activities A359_08830 SM00962 SRP54-type protein, GTPase domain A359_08830 SM00963 SRP54-type protein, helical bundle domain A359_08910 SM00382 ATPases associated with a variety of cellular activities A359_08960 SM00861 Transketolase, pyrimidine binding domain A359_09030 SM00937 A359_09030 A359_09100 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs A359_09100 SM00474 3'-5' exonuclease A359_09100 SM00475 5'-3' exonuclease A359_09100 SM00482 DNA polymerase A domain A359_09220 SM00732 Likely ribonuclease with RNase H fold. A359_09340 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain A359_09360 SM01091 Transporter associated domain A359_09400 SM00945 ProQ/FINO family A359_09410 SM00155 Phospholipase D. Active site motifs. A359_09450 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A359_09470 SM00935 Outer membrane protein (OmpH-like) A359_09520 SM00481 DNA polymerase alpha chain like domain A359_09640 SM00382 ATPases associated with a variety of cellular activities A359_09640 SM00994 ClpX C4-type zinc finger A359_09640 SM01086 C-terminal, D2-small domain, of ClpB protein A359_09650 SM00382 ATPases associated with a variety of cellular activities A359_09650 SM00464 Found in ATP-dependent protease La (LON)