A35E_00001	SM00382	ATPases associated with a variety of cellular activities
A35E_00001	SM00760	Bacterial dnaA protein helix-turn-helix domain
A35E_00002	SM00480	DNA polymerase III beta subunit
A35E_00003	SM00347	helix_turn_helix multiple antibiotic resistance protein
A35E_00004	SM00382	ATPases associated with a variety of cellular activities
A35E_00005	SM00382	ATPases associated with a variety of cellular activities
A35E_00018	SM00382	ATPases associated with a variety of cellular activities
A35E_00018	SM01086	C-terminal, D2-small domain, of ClpB protein
A35E_00022	SM00363	S4 RNA-binding domain
A35E_00023	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A35E_00023	SM00292	breast cancer carboxy-terminal domain
A35E_00023	SM00532	Ligase N family
A35E_00026	SM00316	Ribosomal protein S1-like RNA-binding domain
A35E_00027	SM00411	bacterial (prokaryotic) histone like domain
A35E_00030	SM00749	bacterial OsmY and nodulation domain
A35E_00031	SM01240	A35E_00031
A35E_00039	SM00878	Biotin carboxylase C-terminal domain
A35E_00045	SM00861	Transketolase, pyrimidine binding domain
A35E_00055	SM00382	ATPases associated with a variety of cellular activities
A35E_00057	SM00257	Lysin motif
A35E_00058	SM00382	ATPases associated with a variety of cellular activities
A35E_00061	SM00478	endonuclease III
A35E_00061	SM00525	A35E_00061
A35E_00065	SM00382	ATPases associated with a variety of cellular activities
A35E_00065	SM00962	SRP54-type protein, GTPase domain
A35E_00065	SM00963	SRP54-type protein, helical bundle domain
A35E_00066	SM00382	ATPases associated with a variety of cellular activities
A35E_00070	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A35E_00071	SM01400	A35E_00071
A35E_00081	SM00450	Rhodanese Homology Domain
A35E_00087	SM00836	DALR anticodon binding domain
A35E_00087	SM01016	Arginyl tRNA synthetase N terminal dom
A35E_00098	SM00316	Ribosomal protein S1-like RNA-binding domain
A35E_00111	SM00992	Hemimethylated DNA-binding protein YccV like
A35E_00113	SM00861	Transketolase, pyrimidine binding domain
A35E_00120	SM00479	A35E_00120
A35E_00121	SM00977	TilS substrate C-terminal domain
A35E_00124	SM00271	DnaJ molecular chaperone homology domain
A35E_00131	SM00271	DnaJ molecular chaperone homology domain
A35E_00135	SM00650	Ribosomal RNA adenine dimethylases
A35E_00136	SM00937	A35E_00136
A35E_00148	SM00358	Double-stranded RNA binding motif
A35E_00148	SM00535	Ribonuclease III family
A35E_00153	SM00729	Elongator protein 3, MiaB family, Radical SAM
A35E_00153	SM00876	Biotin and Thiamin Synthesis associated domain
A35E_00155	SM01011	Aminopeptidase P, N-terminal domain
A35E_00156	SM00849	Metallo-beta-lactamase superfamily
A35E_00162	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A35E_00162	SM00474	3'-5' exonuclease
A35E_00162	SM00475	5'-3' exonuclease
A35E_00162	SM00482	DNA polymerase A domain
A35E_00163	SM01228	A35E_00163
A35E_00166	SM00729	Elongator protein 3, MiaB family, Radical SAM
A35E_00168	SM00479	A35E_00168
A35E_00173	SM00883	Chaperonin 10 Kd subunit
A35E_00179	SM00387	Histidine kinase-like ATPases
A35E_00182	SM00363	S4 RNA-binding domain
A35E_00187	SM00363	S4 RNA-binding domain
A35E_00201	SM00382	ATPases associated with a variety of cellular activities
A35E_00211	SM00382	ATPases associated with a variety of cellular activities
A35E_00220	SM00155	Phospholipase D. Active site motifs.
A35E_00222	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A35E_00223	SM00316	Ribosomal protein S1-like RNA-binding domain
A35E_00223	SM00357	Cold shock protein domain
A35E_00223	SM00955	A35E_00223
A35E_00224	SM00788	Adenylosuccinate synthetase
A35E_00225	SM00244	prohibitin homologues
A35E_00226	SM00244	prohibitin homologues
A35E_00229	SM01340	A35E_00229
A35E_00230	SM00257	Lysin motif
A35E_00230	SM00646	A35E_00230
A35E_00238	SM00382	ATPases associated with a variety of cellular activities
A35E_00238	SM00962	SRP54-type protein, GTPase domain
A35E_00238	SM00963	SRP54-type protein, helical bundle domain
A35E_00250	SM00014	Acid phosphatase homologues
A35E_00256	SM00450	Rhodanese Homology Domain
A35E_00258	SM00382	ATPases associated with a variety of cellular activities
A35E_00259	SM00825	Beta-ketoacyl synthase
A35E_00268	SM00155	Phospholipase D. Active site motifs.
A35E_00275	SM00434	DNA Topoisomerase IV
A35E_00277	SM00662	RNA polymerases D
A35E_00278	SM00363	S4 RNA-binding domain
A35E_00278	SM01390	A35E_00278
A35E_00293	SM01374	A35E_00293
A35E_00297	SM00322	K homology RNA-binding domain
A35E_00300	SM01382	A35E_00300
A35E_00300	SM01383	A35E_00300
A35E_00304	SM01403	A35E_00304
A35E_00305	SM00357	Cold shock protein domain
A35E_00305	SM00382	ATPases associated with a variety of cellular activities
A35E_00305	SM00959	Rho termination factor, N-terminal domain
A35E_00310	SM01234	A35E_00310
A35E_00313	SM00849	Metallo-beta-lactamase superfamily
A35E_00314	SM00905	Dihydroneopterin aldolase
A35E_00316	SM00855	Phosphoglycerate mutase family
A35E_00320	SM00663	RNA polymerase I subunit A N-terminus
A35E_00326	SM00649	Ribosomal protein L11/L12
A35E_00327	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A35E_00327	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A35E_00343	SM00840	A35E_00343
A35E_00348	SM00487	DEAD-like helicases superfamily
A35E_00348	SM00490	helicase superfamily c-terminal domain
A35E_00352	SM01350	A35E_00352
A35E_00368	SM00411	bacterial (prokaryotic) histone like domain
A35E_00369	SM00873	B3/4 domain
A35E_00369	SM00874	tRNA synthetase B5 domain
A35E_00369	SM00896	Ferredoxin-fold anticodon binding domain
A35E_00374	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A35E_00377	SM00400	zinc finger
A35E_00377	SM00493	A35E_00377
A35E_00377	SM00766	DNA primase DnaG DnaB-binding
A35E_00384	SM00316	Ribosomal protein S1-like RNA-binding domain
A35E_00386	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A35E_00387	SM00957	SecA DEAD-like domain
A35E_00387	SM00958	SecA preprotein cross-linking domain
A35E_00390	SM00864	Tubulin/FtsZ family, GTPase domain
A35E_00390	SM00865	Tubulin/FtsZ family, C-terminal domain
A35E_00391	SM00842	Cell division protein FtsA
A35E_00415	SM01192	A35E_00415
A35E_00415	SM01193	A35E_00415
A35E_00418	SM00479	A35E_00418
A35E_00419	SM00382	ATPases associated with a variety of cellular activities
A35E_00420	SM00382	ATPases associated with a variety of cellular activities
A35E_00430	SM00382	ATPases associated with a variety of cellular activities
A35E_00432	SM00984	UDP binding domain
A35E_00447	SM00838	Elongation factor G C-terminus
A35E_00447	SM00889	Elongation factor G, domain IV
A35E_00462	SM00564	beta-propeller repeat
A35E_00470	SM00729	Elongator protein 3, MiaB family, Radical SAM
A35E_00472	SM00357	Cold shock protein domain
A35E_00473	SM00841	Elongation factor P, C-terminal
A35E_00473	SM01185	A35E_00473
A35E_00477	SM00563	Phosphate acyltransferases
A35E_00482	SM00904	Riboflavin kinase
A35E_00483	SM00382	ATPases associated with a variety of cellular activities
A35E_00484	SM00829	Enoylreductase
A35E_00488	SM00732	Likely ribonuclease with RNase H fold.
A35E_00491	SM00771	ZipA, C-terminal domain (FtsZ-binding)
A35E_00503	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A35E_00505	SM00935	Outer membrane protein (OmpH-like)
A35E_00510	SM00481	DNA polymerase alpha chain like domain
A35E_00513	SM00257	Lysin motif
A35E_00515	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A35E_00515	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A35E_00515	SM00493	A35E_00515
A35E_00520	SM01323	A35E_00520
A35E_00525	SM00382	ATPases associated with a variety of cellular activities
A35E_00527	SM00487	DEAD-like helicases superfamily
A35E_00527	SM00490	helicase superfamily c-terminal domain
A35E_00527	SM00982	A35E_00527
A35E_00527	SM01058	CarD-like/TRCF domain
A35E_00533	SM00363	S4 RNA-binding domain
A35E_00534	SM00347	helix_turn_helix multiple antibiotic resistance protein
A35E_00543	SM00479	A35E_00543
A35E_00548	SM00478	endonuclease III
A35E_00549	SM00525	A35E_00549
A35E_00554	SM00382	ATPases associated with a variety of cellular activities
A35E_00559	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A35E_00564	SM00986	Uracil DNA glycosylase superfamily
A35E_00564	SM00987	UreE urease accessory protein, C-terminal domain 
A35E_00569	SM00387	Histidine kinase-like ATPases
A35E_00569	SM00433	TopoisomeraseII
A35E_00574	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A35E_00587	SM00382	ATPases associated with a variety of cellular activities
A35E_00595	SM00316	Ribosomal protein S1-like RNA-binding domain
A35E_00600	SM00316	Ribosomal protein S1-like RNA-binding domain
A35E_00600	SM00322	K homology RNA-binding domain
A35E_00601	SM00487	DEAD-like helicases superfamily
A35E_00601	SM00490	helicase superfamily c-terminal domain
A35E_00605	SM00357	Cold shock protein domain
A35E_00605	SM00955	A35E_00605
A35E_00606	SM01409	A35E_00606
A35E_00607	SM00072	Guanylate kinase homologues.
A35E_00608	SM00937	A35E_00608
A35E_00613	SM00382	ATPases associated with a variety of cellular activities
A35E_00613	SM00994	ClpX C4-type zinc finger
A35E_00613	SM01086	C-terminal, D2-small domain, of ClpB protein
A35E_00614	SM00382	ATPases associated with a variety of cellular activities
A35E_00614	SM00464	Found in ATP-dependent protease La (LON)
A35E_00623	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A35E_00625	SM00563	Phosphate acyltransferases
