LOCUS BK013450 3891 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Esthiorhiza.3_1 genomic sequence. ACCESSION BK013450 VERSION BK013450.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Esthiorhiza.3_1 ORGANISM ssRNA phage Esthiorhiza.3_1 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus neohumivicinum. REFERENCE 1 (bases 1 to 3891) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 3891) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-3891 MN033260.1 1-3891 FEATURES Location/Qualifiers source 1..3891 /organism="ssRNA phage Esthiorhiza.3_1" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786077" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus Esthiorhiza.3_1" gene <1..1246 /gene="Esthiorhiza.3_1_1" CDS <1..1246 /gene="Esthiorhiza.3_1_1" /codon_start=2 /product="maturation protein" /protein_id="DAD50167.1" /translation="EIPMSVTASQGTDSYSNPLYFKAREQIMFLERQVARYPDNLDYA RVLRVLRNWDLGSHFWTARQSSEISSPLIRLGETRISSVQGFSFVGRFLPQPVNPVVY TSTVWPKMPNQAAAINAARIVGTAAINRTIPTVPVVSLSNVIGELYHDGLPAILGSTI WKAKSLKQGFKASGSEYLNFQFGWKPFVSDLKSICRTAIRAREHLAKYERESGRIIGR HLEFPVDRDNTITVTGNRALYPAIISTAFVGSALAPLSTHSWSDSRYWFEGTYSYYLP PMSSTRSKILRYASEAEKLLGLQITPEVIWNLAPWTWLSDWFANFGDIISNFSALGKD NCVLRRGYIMCTTHSGITYTHPGSNLKGYGNTGSVSQSFITTGKLRQKASPYGFGVTW LDFTPRQIAILAALGISRDRLL" gene 1246..1734 /gene="Esthiorhiza.3_1_2" CDS 1246..1734 /gene="Esthiorhiza.3_1_2" /codon_start=1 /transl_except=(pos:1246..1248,aa:Met) /product="coat protein" /protein_id="DAD50168.1" /translation="MLSHQMALQNDGHLRPPTRRQLRGFIAAWTAIAVLYLSRRRVMA FSDPQTITINSVANTLPRTSSGISSGVFTKDDGTVRLSVGHSSGKRMQDNIRVDFQKI APNPLISAQNIMFSMSVNLRVDRPLTGFTVAEAKQIVDALTSYMTATSGARATQLLGG ES" gene 1735..1896 /gene="Esthiorhiza.3_1_3" CDS 1735..1896 /gene="Esthiorhiza.3_1_3" /codon_start=1 /product="hypothetical protein" /protein_id="DAD50169.1" /translation="MPSEDLRTFEGFLEFSGTITMVGLAILIGMVNRLLKKFKDDPSG TRPDEDEEP" gene 1933..3750 /gene="Esthiorhiza.3_1_4" CDS 1933..3750 /gene="Esthiorhiza.3_1_4" /codon_start=1 /transl_except=(pos:1933..1935,aa:Met) /product="RNA-directed RNA polymerase" /protein_id="DAD50170.1" /translation="MKSLMSLVQEVLTDVGTWCGVSTTNDFKTVVSRVEAEGLSFLTI SLPSYASDLQKGLEHGKVDHQLFQGFRSGRGGLPLFLGGFLDLVFDRKSGLLLDVPNV DAIFAIRQISLLCSKINLPCTPKRERAALTRYIECESDVRKSDALLSPQQVEDFSRVS SLLWASVLSEVDRKIYYGNAVPKHGPGATADKLRGNAKYRQSEWTQRLEEYFPEGEYL FPNWRHYDANRTNIREPGAEMPVKVISVPKTLKTPRIIAVEPTAMQYVQQGIAEILTE AIRSDKDHRSGMDRMGRIVGFDDQETNQSLAHQGSLFGSLATLDLSDASDRVSNQHVR LLLRNHPHLLSGVDACRSRKADVPGYGVQRLAKFASMGSALTFPIEAMIFSIIVFIGI ESKLNRRLTNESIQAFVGRVRIYGDDIIVPVEFAESVVDTLHTFGYVVNVSKSFWLGK FRESCGKEFYDGYDVSVVRIRQQLPTQRRDAQEVISTVSLRNQFYKRGLWKVTKWLDE LLEGIIPFPHVLPESPVLGRHSFLGYDTERMCPKLHHPLVKGVVVSSTPPKSPLSGSD ALLKYFLKRGDMPFADREHLERSGRPLAVRIKQRLASAT" gene 3768..>3891 /gene="Esthiorhiza.3_1_5" CDS 3768..>3891 /gene="Esthiorhiza.3_1_5" /codon_start=1 /product="hypothetical protein" /protein_id="DAD50171.1" /translation="MARFSFLDSSPIFGEGGLDARGLTSYDVSAGSPAEERDCIS" ORIGIN 1 cgaaatcccg atgagcgtca cggcgagtca ggggactgac tcgtactcga atcctcttta 61 ctttaaggct cgggagcaaa tcatgtttct ggagcgccaa gtagcgcgct atccagataa 121 tcttgattat gctcgagttc ttagagtttt aaggaactgg gatctgggaa gccatttctg 181 gactgcccgc caatcctccg aaatctcatc acctttgata agattaggag agacgcgcat 241 cagttcagtt cagggtttct catttgttgg taggtttctc ccgcagcctg taaaccctgt 301 ggtttacacg tctacggttt ggccaaagat gcccaatcaa gcagctgcaa ttaatgctgc 361 tcggattgta ggtactgcgg ccataaatag aaccatacca acggttccag tggtgtctct 421 ttcaaatgtt atcggagagc tctatcatga tggcctaccg gccatcttgg gctcaacgat 481 ctggaaagct aagtctctga agcagggctt taaagcctct ggttctgagt acttgaactt 541 ccagtttggg tggaaacctt tcgtttccga tctcaaaagc atttgccgta cggcgatcag 601 ggctcgagag cacctggcga agtacgaaag agagagcggc cggattattg gccgtcacct 661 cgagttccca gtcgaccgcg acaatacgat aactgtgact ggtaacaggg cattgtaccc 721 tgctatcata tccacagcgt ttgtcggatc ggcgttggcg cctttatcta ctcactcttg 781 gagtgatagt agatattggt tcgaaggcac atactcgtat tatcttcctc cgatgagttc 841 tacacggagt aagatcttgc ggtatgcatc agaagctgaa aagcttctgg gcctacaaat 901 cactcctgaa gtgatttgga acctagcgcc atggacctgg ttgtccgact ggtttgctaa 961 ctttggagat ataatctcta attttagcgc actagggaag gacaactgcg tgcttaggcg 1021 tgggtatatc atgtgcacta cgcacagtgg tattacctac acgcatcccg gttctaacct 1081 aaaaggttat ggtaataccg ggtctgtctc acagtcgttt atcacgactg gtaagttgag 1141 gcagaaagca agcccttacg gttttggcgt gacgtggttg gatttcactc cacgacagat 1201 cgccatcctt gccgctctcg gtattagtcg agatcggctt ttgtagtgct gtcgcaccag 1261 atggcactgc agaatgatgg tcacctacga cctcccacga ggaggcaact taggggattc 1321 atcgcagcat ggaccgcaat tgcggtcctg tacctgtcta ggagacgtgt tatggctttc 1381 tctgacccac agaccatcac aatcaactct gttgctaata cgcttccgcg tactagcagc 1441 ggtattagtt ccggagtctt tacaaaagac gacgggactg ttcggttgtc tgtcgggcat 1501 tcctctggaa agaggatgca agacaacatc cgggttgatt tccagaagat cgccccgaac 1561 cccctgatct ccgcgcagaa catcatgttt tccatgagtg ttaatctgcg tgtagatcga 1621 cccctaacgg ggtttacggt ggctgaggcg aagcagatcg tggatgctct tacgagctac 1681 atgactgcta cttctggtgc tcgggctacc cagttactgg gaggcgagag ctaaatgcca 1741 tcggaagatc tccggacttt cgagggtttc ctcgagtttt ccggtacgat cacgatggta 1801 ggtctggcca tcctaatcgg gatggttaat cgtctcttga agaaattcaa ggacgacccg 1861 tccggtacaa gaccggacga ggacgaggag ccataactag ggacgtctta cctaccttga 1921 aaggtggggg gcgtgaaaag cctgatgtca ctagtgcagg aagttctcac agatgtggga 1981 acttggtgtg gcgtaagcac cactaacgac tttaaaacgg tcgttagtcg tgtcgaagcg 2041 gagggattat cgtttttaac gatatcctta ccgtcttatg cttcggacct ccaaaaaggc 2101 ctggagcatg ggaaggtaga tcatcaactc tttcagggct ttcgctctgg aagaggaggt 2161 ctccccctat ttctaggagg tttcctcgat ctggtcttcg accggaagag cgggctgttg 2221 ctcgatgtgc ctaatgttga tgccatcttt gcgatacggc agatttctct gctgtgttca 2281 aagattaacc tcccatgcac gccaaagcgt gagagagcag cattgactcg gtacatcgag 2341 tgtgagtcgg atgttaggaa gagtgatgct ctgttaagtc ctcaacaagt tgaggatttt 2401 tcgagagtgt catctctact ttgggcgtca gttctctcgg aggtagatcg taagatctac 2461 tacgggaatg ctgtcccaaa gcacggtcct ggtgccaccg ctgacaagct tcgcggaaac 2521 gcgaagtatc gccagtctga gtggactcag cgtttggaag agtactttcc ggaaggagag 2581 tatctgtttc cgaactggcg tcattatgac gccaaccgta ctaacatccg cgaacctgga 2641 gctgagatgc ctgttaaggt tatctcagtt cctaaaacgc tgaaaacccc aaggataatc 2701 gcggttgagc ctactgccat gcaatatgtg cagcaaggta tcgccgagat tctcactgaa 2761 gcgatccgat ctgacaagga tcatcgatcc ggtatggatc gaatgggtcg catcgtcggt 2821 tttgatgatc aggagacgaa tcagtctctt gctcatcagg ggagcctttt tggctctctt 2881 gcaacgctcg atttgagcga tgcttccgat agggtttcca atcagcatgt acgacttcta 2941 ctacgtaacc atcctcactt attaagtggg gttgatgcgt gtagaagtcg gaaggctgat 3001 gtgcctggct atggcgttca acgccttgcc aagttcgcgt ctatgggttc agctttgact 3061 tttcccatcg aggcaatgat attcagtatc attgttttca tcgggattga gtcaaagctc 3121 aacaggcgct tgaccaacga atccatacag gcattcgttg ggcgcgtgcg catctacggc 3181 gacgatatta tcgtccccgt agagttcgcc gaatccgttg ttgacacatt acatactttt 3241 gggtatgtag taaatgtcag caagtctttc tggcttggca agttcagaga gtcttgcggt 3301 aaggagtttt atgacggtta cgacgtttca gtcgtccgca taagacaaca actccctacc 3361 caacggaggg acgctcagga ggttatttcc actgtatcct tacgcaacca gttttataaa 3421 cgtggtttgt ggaaggttac aaagtggctg gatgaacttc ttgagggaat tattccgttc 3481 cctcatgttc ttccagagtc tcctgtgtta gggcgccatt cgttcctggg gtatgatacg 3541 gagcgaatgt gtccgaagct acatcaccct cttgtcaagg gtgttgtagt ttcaagcact 3601 ccacctaagt ccccacttag tggaagtgat gccctactca agtacttcct taaacgcggc 3661 gatatgcctt tcgccgacag ggagcactta gagcgttctg gacgtcctct tgccgtccgc 3721 atcaagcaga ggctagcgtc tgccacataa tcggcttgga aaccgatttg gctagattct 3781 cctttctcga ttcttccccg attttcgggg aagggggatt ggacgctagg ggacttacat 3841 cttatgatgt aagtgctggt tcgccagctg aggagagaga ttgtatctcc t //