LOCUS BK013408 4732 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gephyllon.1_1 genomic sequence. ACCESSION BK013408 VERSION BK013408.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gephyllon.1_1 ORGANISM ssRNA phage Gephyllon.1_1 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus neochoradaptatum. REFERENCE 1 (bases 1 to 4732) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4732) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4732 MN032992.1 1-4732 FEATURES Location/Qualifiers source 1..4732 /organism="ssRNA phage Gephyllon.1_1" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786108" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus Gephyllon.1_1" gene 210..1478 /gene="Gephyllon.1_1_1" CDS 210..1478 /gene="Gephyllon.1_1_1" /codon_start=1 /product="maturation protein" /protein_id="DAD50021.1" /translation="MAQQTKRRDLPWKGWKGVLHGTTKDNPDYVIHVESGHAGFMGKQ ETLSENHPSWLARKRGSIQGDAGGDFLMKKQYVETPESAVFRSAKASYRDTLHTGYNM KMSFTGGSIPSGIPANPWPAYQNSSNAGLDAWGAKAISICKPDSRVANAATTLIELYR EGLPHLMGAATWEARALSAKAAGNDYLNVEFGYKPLANDIAKFAYGVIYFDKVVRQMQ RDLGRVVRRRYSFPPIVSTDTQLVREPATPAYIPSSTICDTVFPNTAGRTYQTTVTTV NRWFSGAFTNYAPPVPEGYGRVDAATKLLGLDLTPEVLWEVMPWSWAVDWFSDAGSVI SNFQAFKIDGLVMRYGYVMEHVVSKRTYYHTGPTGSCFGDSVYPTSMVFVTETKARRR ANPYGFGLTDAGLTGRQKTILGALGITKSR" gene 1541..1909 /gene="Gephyllon.1_1_2" CDS 1541..1909 /gene="Gephyllon.1_1_2" /codon_start=1 /product="coat protein" /protein_id="DAD50022.1" /translation="MALTDPQSITINAVTTPLPRTFSEGNESAYTSADGLWKLSLNHT PVKQGRLRHLLRFDHSKVTPDPYINTQNVKVNSAIYLVVDVPPAGYTNAEIMQVYNGF KALYTATSDAVITKLIGGES" gene 1896..2159 /gene="Gephyllon.1_1_3" CDS 1896..2159 /gene="Gephyllon.1_1_3" /codon_start=1 /transl_except=(pos:1896..1898,aa:Met) /product="hypothetical protein" /protein_id="DAD50023.1" /translation="MVNRREDGAQPSTEGEDLERDDHLLKIGKRRRRDDVEVNELDIR IKVSYKTLTMVFVLFSLADRIINSLSERDLSVVSEKLFGWFPF" gene 2260..2571 /gene="Gephyllon.1_1_4" CDS 2260..2571 /gene="Gephyllon.1_1_4" /codon_start=1 /product="hypothetical protein" /protein_id="DAD50024.1" /translation="MLHDPGESLYPVNLAFAMKVCRFANAELAAQDEWFGFRYVVDCN VHESFDPHCEVPIWDDVDETWLTTSDLLCRLTPENAAICRWPLGRVDRIRRNSLERNQ G" gene 2626..4575 /gene="Gephyllon.1_1_5" CDS 2626..4575 /gene="Gephyllon.1_1_5" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD50025.1" /translation="MKSLMSLWSRMAEESAIQCCTSASRDINTVSARIEHEGLSFLTI TLPSLGKAIQKWLDQGQVTSHPAFITERGRSLPRFLGGFFSRVFDRDSGVLLDEPCVD SIIALRQLTLMFGKMELPCSDARKRKSVRNYVKCEQEVRLFDNELSESDLREFVRMSN MLFGRVFAKVDRDIYYGRHIPRHGPGSTADGLKGNQKFIQTVWTERLEKAGLAAGENL LPNWRSYHQLAGVDFLEPGAEVPVQVTLVPKTLKTPRVIAMEPTCMQYMQQAILQRLL AYLGKDNFLSRVIGFDDQVPNQELARIGSADNRTATLDLSDASDRVSNQLVRAMLQQW PHLSGAVDATRSRRARLPDGEVIRLAKFASMGSALCFPFEAMVFTTLIFLGIQKSLST TLCRKDLYRLFADKVRVYGDDLIVPVDHVLTVVDMLEHFGAQVGTDKSFWTGRFRESC GREYFNGHDVSITRVRQEFPARRQDANEVQSLVSLRNQLYMSGYWKTVQWLDGQIRKV LTHFPTIQPTSSLLGRVSFLAYSDKLLAVDRSGATQWPDSKLHPSLHIPVVKGYVVKA KPPQNPLGGTGALLKCLLKLDKGASLRDSIPWLHSGSQALDSEESWSRHPLEHLVPMV STSEHLERSGRPKSSSMKLGWRSPL" ORIGIN 1 cccccgtaag ggggcccggc gcagtgcagt acatctgtac ccctatggtg gttccgctga 61 gagcacgttg aagcgggcgt tatgcccgct aatccgtgcc gtaggcgtcc tggtttacac 121 caggtgctcc ctttccgggg gagcgaccat tgttggggta gcaattagag ggaattaacc 181 ctctaggacc taaggagctc tggtggccat tggcccagca gaccaagcgc cgcgatctac 241 cctggaaagg gtggaaaggg gtgctacacg gtaccacaaa ggataaccct gactacgtta 301 tccatgtgga atccgggcat gctgggttca tgggaaagca agaaacgctt tctgagaatc 361 acccttcttg gttggcccgt aaacgtgggt caattcaagg agacgctgga ggcgactttc 421 tgatgaagaa gcagtacgtg gagacacctg agtcagctgt cttccgttct gcaaaagctt 481 catacagaga taccctacat actgggtata acatgaaaat gtcctttaca ggtggcagca 541 tcccttcggg gattcctgcc aacccgtggc ccgcgtacca gaatagcagt aatgctggac 601 tggatgcgtg gggcgcgaag gccattagta tatgtaagcc ggactccagg gttgcgaacg 661 cggccacgac acttatcgag ttgtaccggg agggtcttcc ccatctaatg ggggcggcca 721 cctgggaagc tcgggcactg tctgctaaag cagcaggcaa tgactatctg aacgttgagt 781 tcggatataa gccgttggct aatgacatcg ctaagttcgc ttacggtgtc atttactttg 841 acaaggtcgt gcggcaaatg cagcgcgacc tgggcagagt agttcgtcgc aggtattctt 901 ttccacctat cgtgagcaca gatacgcagt tggtgaggga gccggcaacg ccggcataca 961 taccctcatc tacaatctgc gatactgtgt tcccgaacac ggcaggcaga acctaccaga 1021 caacggttac gaccgtcaac cggtggttct caggcgcctt taccaattat gcacctcctg 1081 ttccggaggg ctatggtagg gtggacgcag caacaaaatt gctgggtctt gacctgactc 1141 ccgaagttct ttgggaggtt atgccgtgga gctgggctgt cgattggttc tcagacgctg 1201 gaagtgtcat ttcgaacttc caagcgttca agatcgatgg tctggtgatg cgatatgggt 1261 acgtaatgga acatgtagta tcaaaacgta cctattatca taccggaccc accgggagtt 1321 gtttcggtga ttccgtgtat ccgacgtcga tggtcttcgt cactgagacg aaggcacgac 1381 gacgggcaaa cccctatggg tttggtctga ccgatgccgg tctaaccggc agacagaaga 1441 ccatccttgg cgctcttggt ataactaaga gtcgctgagg gatgtaccta tctgcgtaac 1501 gccaatgggg ctgtagacca cagccctagg agtgatgcct atggcactaa ccgatcctca 1561 gtccatcacg attaacgcgg taactacgcc ccttccgaga actttttcgg agggaaacga 1621 gtccgcgtat acatccgctg atggactgtg gaagctgtcg ctaaaccata cccctgtgaa 1681 gcagggcagg ttgcggcatc ttctgaggtt cgaccactcg aaggttactc cggacccgta 1741 tattaacacg cagaacgtga aggtcaattc ggccatttat ttggtcgttg acgttccgcc 1801 tgcgggttac acgaacgcgg agatcatgca agtgtacaat ggcttcaagg ccttgtacac 1861 tgcaacttcg gatgcggtca tcaccaagct aattggtggt gaatcgtagg gaggacggcg 1921 ctcaaccgtc gacagagggt gaggatctcg aaagagacga tcatcttctg aagataggta 1981 agcgtcgccg ccgtgatgat gtcgaggtga atgagcttga cataaggatc aaagtgagct 2041 ataaaacgct cacaatggtc tttgtcttgt tcagtctcgc cgaccgcatc atcaattcac 2101 tgtctgaacg ggacctgtcc gttgtgagcg aaaagctctt cggctggttt ccgttttagc 2161 ggtgataggt tagcccccgt aagggggtca gctccgtggt actagcctat ggcgtgtatc 2221 ataacaacga tcgggttctt cccgagaaag gtaacagtaa tgctacacga tcccggggag 2281 agtttgtacc ccgtaaacct agccttcgcc atgaaggttt gccgcttcgc taacgcggag 2341 ctggcagccc aagacgaatg gttcggtttc cgctatgtcg tggactgcaa cgttcacgag 2401 tccttcgatc cgcactgcga agtgccgatc tgggatgacg tggacgaaac gtggctcacg 2461 acgtcggatc tgttgtgccg actcacgcct gaaaacgctg ccatctgtcg ctggcctctc 2521 ggccgggttg acagaatcag gcgtaacagc ctggagcgta atcagggcta gatgttagtg 2581 acataggcta tggattcgtt aaccctccca tgaaaggagg ggacgatgaa aagcctgatg 2641 tcactctggt cccggatggc agaggaatcc gccatccaat gctgcactag cgccagccga 2701 gacattaata ccgtctcggc tcggatcgaa catgaggggt tgtcgtttct aacgattacc 2761 ctaccttccc taggaaaggc catccaaaaa tggcttgacc agggacaggt gactagccat 2821 cccgcgttca tcactgaacg tgggagaagt ctcccccgat ttctcggagg tttcttcagt 2881 cgtgtgttcg accgtgatag tggtgtgcta cttgatgagc cctgcgttga ctccatcatt 2941 gcccttcgtc agctaacgct gatgtttggt aagatggagc ttccttgcag cgatgcgagg 3001 aagcgtaagt cagtgcggaa ctatgtcaag tgtgagcagg aagtccgttt gttcgacaat 3061 gaactctctg agagcgatct tagagagttt gttagaatgt cgaacatgct ctttggtcgt 3121 gtgttcgcca aggtagatag agatatctac tatgggcgtc acataccaag gcacggtcca 3181 ggatccaccg ctgatggact taagggtaac caaaagttca ttcaaacggt ctggaccgaa 3241 cgtctcgaaa aagctggcct cgcggccggc gagaatctgc tgcctaattg gcgaagttat 3301 caccagttgg caggagttga cttcctcgaa cctggcgcgg aggtacctgt acaggttacc 3361 ctcgtaccta agacgcttaa gactccgcga gtgatcgcca tggagccgac ttgcatgcag 3421 tatatgcagc aggccatact ccagcgactc ctcgcgtacc tcggtaagga taacttcctt 3481 tcgagggtta tcggatttga cgaccaagtt cctaaccagg agcttgctcg aattggttcg 3541 gctgataacc gaactgcgac actcgatctg agtgacgctt ccgatagagt ctctaatcag 3601 ctcgttagag cgatgttgca acagtggcct catttgtcag gggccgttga tgcgacccgt 3661 tctagacggg ctaggcttcc cgacggcgaa gtaattcgcc tcgcgaagtt cgcgtctatg 3721 ggttcagcgc tctgtttccc cttcgaagca atggtcttta cgacattgat cttcttgggg 3781 attcagaagt cgcttagcac aacactttgc cgcaaagatc tgtatagact ctttgcggat 3841 aaggtgcgcg tctacgggga cgatttgatc gtacccgtgg atcacgtgct taccgtcgtc 3901 gatatgcttg agcatttcgg tgctcaagta gggaccgaca agagtttctg gaccggaagg 3961 ttcagggagt cttgtggcag ggagtacttt aatgggcacg atgttagtat aactcgtgtc 4021 cggcaagagt tccctgcacg acggcaggat gctaatgagg tacagtcgct cgtgtctctt 4081 cggaaccaac tctatatgag tggttactgg aagaccgtgc agtggctgga tgggcaaatt 4141 cggaaggtat tgacacactt tccgaccatc caacccacgt cctcattgct gggcagggtt 4201 agctttctag cctacagcga taaactactt gctgtggacc gatcaggcgc tacacagtgg 4261 cctgatagta agctacaccc aagccttcat atccctgtcg ttaagggata tgtagtgaag 4321 gccaaacccc ctcagaatcc tttggggggg actggtgccc ttcttaagtg tttgcttaag 4381 ctggacaagg gagctagttt aagggattca attccctggc ttcactccgg cagtcaggcc 4441 ttggactcgg aagagtcctg gtctcgacac ccattggaac acctcgttcc gatggtttct 4501 actagcgaac acctagagcg ttctggacgc cccaagtcgt ctagcatgaa acttgggtgg 4561 agatcacccc tttaagggtt ggtcggggcc agcctagagg ctgaccttga gggagagtcc 4621 gacagtgcct ggccagccac ctatcaaggt ggccgctggg ctccgaccca gacatgtacc 4681 cctgttaggg gactagatct ggttggactt ttgtagcacc gtgaggtgct at //