LOCUS BK013991 4402 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gephyllon.1_3 genomic sequence. ACCESSION BK013991 VERSION BK013991.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gephyllon.1_3 ORGANISM ssRNA phage Gephyllon.1_3 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus neochorovicinum. REFERENCE 1 (bases 1 to 4402) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4402) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT THIRD PARTY ANNOTATION DATABASE: This TPA record uses data from DDBJ/EMBL/GenBank entry MN036318 ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4402 /organism="ssRNA phage Gephyllon.1_3" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786129" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus Gephyllon.1_3" gene <1..1423 /gene="Gephyllon.1_3_1" CDS <1..1423 /gene="Gephyllon.1_3_1" /codon_start=2 /product="maturation protein" /protein_id="DAD52057.1" /translation="HGGPGRSATCPHLAVGYRRFSLQDLSVYWPDRRCSLVHRFRDVP YIGPTKGVIKTTHVDIGDSRNSGSYETSDLNLSLPPYLSGGQSTDSESHPDWNDTREG VFLKDVGGPFNTMRWWAELSNSTQSTFKHAVTSGHNQGYPSGRYIDELVYKGPILPCH PSIMPWPSWHQSSSKELDELGTTAIARSSPSNPSVDLAVAVGELFKEGIPKTIGATLH EFRGLSNRKRRRAIGEEYLNYEFGWKPLVNDLLSFCSAVVDADSTFSRYERDSRRPVR RRYDFPVIRETGIEIFRGGVSPWMNPSSNFFYTPLLNTGQVYLTRTRETRRWFSGSFA YYVPPAKGLRNQMARAVIQARKTFGISLTPDTLWNLAPWSWGVDWFSNTGDVLSNWTD WAIDNQVLLYGYMMETNVFRNTFTFVGETGIVNCPPPPDVILSVVTKTRRRATPYGFG LSYDDFSSRQKAIIAALGISRSR" gene 1490..1852 /gene="Gephyllon.1_3_2" CDS 1490..1852 /gene="Gephyllon.1_3_2" /codon_start=1 /product="coat protein" /protein_id="DAD52058.1" /translation="MSFTDPLSVTIAAVTTPLPRVSVGDDRSEYQSADGLILLSASHD YGKRTRRVLRIDTSKLTSDPFKPAENVKVSMSNYMVFDTPPAGYPAAEALAVYAGFKA LFTASSDAMIIKLLGGES" gene 1857..2075 /gene="Gephyllon.1_3_3" CDS 1857..2075 /gene="Gephyllon.1_3_3" /codon_start=1 /transl_except=(pos:1857..1859,aa:Met) /product="hypothetical protein" /protein_id="DAD52059.1" /translation="MGQTFQSDPFPGGFHLVELISPCRQMMINVEEILVSRETPTLIT VHLLEDTFLREGAVQITIRVQHSPRSSW" gene 2299..4266 /gene="Gephyllon.1_3_4" CDS 2299..4266 /gene="Gephyllon.1_3_4" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD52060.1" /translation="MKSLMSLWSCTAHEMAVRCCTSATRDITTVSSRMEHEGLSFLAI TLASYGKAIEKWLNQGFVVPSDCPAFGRRPGRRTGLPEFLQGFLGRVFDPCSGTLLSD PDIEAIYALRQLTLMFSKIALPEDTSDGSLRQVVSPDRERLAMSEFIQCEQEVKFYDS ILDLSYMDDFKRISQVLFGEAFDRMENSISFGRLVPKHGPGAVADRLSSNAKYNQHTW TTRLQQVFPVEDYVAVNARFDLGTQPSDCFSPSVTMYLGREKAWNDGSAPFDFLEPGS EIPVRVISVPKTLKSPRIIAIEPTCMQYMQQALFQLIRDEIERDDILSLMIGIEDQEP NRLLALEGSLSGDLATLDLSEASDRVSNQHVLALFSEHPLLSEAVQATRSRKADVHGF GVQRLAKFASMGSALCFPIEAMVFLTTIFIGLERELSAPRLERKVVKSFSKQVRVFGD DIICPRDYVLSVVDALSDFGHKVNISKSFWTGRFRESCGREYYDGHDVSIVKVRRVLP TRRQDAEGVMSLVALRNQLYWAGLWQSASWLDVYARKLLKHFPNVAPTSSLLGRESAL GYEFDSLHPYTHSPLIKGYYVSAKPPVDSLSGHGALLKCLLRSSKPSSLIETSRPYSS RFGDANIDDEHLERSGRPEHVNIKLGKRSPV" gene 4293..>4402 /gene="Gephyllon.1_3_5" CDS 4293..>4402 /gene="Gephyllon.1_3_5" /codon_start=1 /transl_except=(pos:4293..4295,aa:Met) /product="hypothetical protein" /protein_id="DAD52061.1" /translation="MREIEDLSLSLGPLSGDPTGASWSPLRGSSLGDALR" ORIGIN 1 tcacgggggc ccagggcgca gcgcaacatg tccccaccta gcggtggggt atcgcaggtt 61 ttccctgcag gacctatcag tttactggcc ggataggagg tgttcattgg tccatagatt 121 tagggatgtt ccctatatcg gaccgacgaa aggtgtgatt aaaaccacac atgtagacat 181 tggggattct agaaacagcg gctcttatga gacgtctgat ctgaacctca gtctaccgcc 241 ttacctttcc gggggtcagt ctactgactc agaaagtcat cctgattgga atgatacccg 301 tgagggtgtc ttccttaagg atgttggagg cccgtttaac accatgcgtt ggtgggctga 361 gttgtctaat agcactcagt ctacctttaa gcatgctgtt acgagtggcc ataatcaagg 421 ctacccgtcg ggcaggtaca tagatgagtt ggtctataaa ggaccgattc ttccatgtca 481 tcctagcatt atgccgtggc cttcctggca tcaatcgagt tcgaaagaac ttgatgagct 541 tggaaccact gctattgcta ggtcttctcc atctaatcct tccgtcgatc tagccgtcgc 601 agttggtgaa ctcttcaaag agggcattcc caagactatt ggagctacgc tccatgagtt 661 taggggtctc tctaaccgta agcgcagacg cgctattggt gaagagtatc tcaactacga 721 attcggctgg aagccgctcg tcaatgattt gctgagcttc tgctcagcag ttgtcgacgc 781 tgattctact tttagtagat atgagcgtga ctctagacga ccggttcgac ggcggtatga 841 cttcccggtt attcgggaaa cgggtataga gatctttcgt ggtggggtta gtccttggat 901 gaaccccagt tcgaatttct tctatactcc tctcctgaat acaggacagg tttatctcac 961 gagaactcgt gagacacgta ggtggtttag cggctcgttt gcctattacg ttcctccggc 1021 taaaggcctg aggaaccaaa tggctcgtgc cgtgatccaa gcgcgtaaaa cgtttggaat 1081 atcacttacg ccagatactc tctggaacct tgctccttgg agctggggtg tcgattggtt 1141 cagtaataca ggcgacgttt tgtcgaactg gactgactgg gctatcgaca accaggtgtt 1201 gttgtatggg tatatgatgg agactaatgt cttcagaaat acctttacat ttgttggaga 1261 aacgggcatt gttaattgcc cgcctcctcc cgatgtcatt cttagtgttg tcactaagac 1321 tagacgtcgg gcaacacctt atggtttcgg cctttcgtat gacgattttt cgtcacgaca 1381 aaaggcgatc attgccgctc tcggcatcag ccggtcgcgg taatgcagac atgttgtatg 1441 cgtttaaacg ccaacaggga gtctaaccgg gctcctagga gtgatgctca tgtcattcac 1501 cgatcccctg tccgtcacga ttgcggcagt cactacgccg ttgcctcgcg taagcgttgg 1561 cgacgatcgc agtgagtacc aaagcgctga cggtctgatc cttctgtccg cttcccatga 1621 ctatgggaag cgcaccagga gggtccttcg gatcgacact tcgaagctga cctcggatcc 1681 gtttaagccg gcggagaacg tgaaggtttc catgtcaaat tacatggttt tcgacacgcc 1741 tcccgctggc tatccggccg ccgaggctct cgcggtgtac gcgggtttca aagccctctt 1801 caccgcatct tcggacgcga tgattatcaa gctccttgga ggtgagtcct aaccgggtgg 1861 gtcagacttt tcagtctgat ccgtttcccg gtggatttca cctcgttgag ctgatttcac 1921 cgtgtcgcca gatgatgatc aacgtagagg agattctcgt ttcaagagag actccgacgt 1981 tgatcaccgt tcatctcctc gaagatacct ttctccggga aggcgccgta cagatcacta 2041 tccgcgtaca acattcacca agaagttctt ggtgatcatt gtcgcggtga tcaatgcggc 2101 gtacttggca agtgaggcat ttctcggctt gattcactca tgctgattat gcctgtgagt 2161 tcttcgtatt ctacatcgaa gcttcgagga tacatggtag taaaatactg tgtattcccc 2221 ggacctctct tttgtagaat gcgttgagcg tccttgacat gggctatgga tgaccacctt 2281 ccaattaagg aggggatcat gaaaagcctg atgtcactct ggtcctgcac tgctcatgaa 2341 atggcagtgc gatgttgcac tagcgccact cgggacataa caactgtctc gagtcggatg 2401 gaacacgagg ggcttagctt tctagctatc accctggcga gctatggtaa agccatcgaa 2461 aaatggttga accaaggctt cgtcgtccct tcggactgtc cggccttcgg aagaaggcca 2521 ggccgtcgta ctggtctccc tgaatttctt cagggtttcc ttggacgtgt gttcgatcct 2581 tgtagtggca cactattgtc tgatccagac atcgaggcaa tctatgctct tcgtcagcta 2641 acgctgatgt ttagcaagat agccctcccg gaagatacca gtgatggcag tcttcgtcag 2701 gttgtaagtc ctgaccgcga gaggctagcg atgtctgagt tcattcaatg tgagcaggaa 2761 gtcaagttct acgactccat cttagatctg tcctatatgg acgattttaa gaggatctcg 2821 caggtgcttt tcggtgaagc ctttgaccgt atggagaatt caatctcctt cggcaggctc 2881 gtccctaagc acggtccagg cgctgttgct gatcgtctta gcagtaatgc taagtacaat 2941 cagcatacct ggaccaccag acttcaacag gtttttcctg ttgaagacta cgtagctgtg 3001 aatgcccgtt ttgatttggg cactcaacct tcggattgtt ttagtccgtc ggtaaccatg 3061 tatcttggcc gtgaaaaagc ctggaatgat ggttctgctc cgtttgactt cctcgaacct 3121 ggttccgaaa ttcccgtaag ggttatttcg gttcctaaga cgctcaagtc acctcgaatt 3181 attgctatcg agccaacctg tatgcaatat atgcagcagg cgctctttca gcttattcgt 3241 gatgagattg agagggatga tatcctctcg ctcatgatcg ggatcgagga ccaggagcct 3301 aatcggcttt tggctctcga agggtccctc agcggggatc ttgctacact agaccttagt 3361 gaagcttccg atcgtgtctc gaatcagcat gtacttgccc tattctctga gcatcctctt 3421 ttgtctgagg ctgttcaagc gactagatca aggaaggctg acgttcatgg cttcggcgtt 3481 caacgcctgg ccaagttcgc gtctatgggt tcagctctct gcttcccgat tgaggcaatg 3541 gtctttttga ccaccatctt tatcgggcta gagcgggagc ttagtgctcc acgtcttgag 3601 agaaaggttg tcaagtcttt ctccaagcag gtgcgtgtct tcggggacga tattatttgt 3661 cctcgagact atgtgctgtc cgtcgttgat gcgcttagtg attttggtca caaagtcaac 3721 atcagcaagt ctttctggac cggaaggttc agggaatctt gcggacggga gtattacgat 3781 ggccatgacg tttctattgt caaggtcaga cgtgtacttc cgacgcgacg gcaggacgct 3841 gaaggagtta tgtcgcttgt tgctttgagg aaccagcttt attgggctgg cctctggcaa 3901 tcggcgtctt ggttggatgt ttacgcaagg aagttgttaa aacactttcc gaacgtagca 3961 ccaacctcct ccttgttggg cagggagtcg gctctcggat atgaattcga tagccttcat 4021 ccgtacactc acagtcctct tatcaagggc tattatgtga gtgccaaacc cccggtagac 4081 tctctatctg ggcatggtgc ccttctaaag tgtctcttgc ggtcgagcaa gccttctagt 4141 ctcattgaga ctagtcgtcc ctactcgtcg cgattcggtg atgcgaacat cgatgatgag 4201 cacttggagc gttctggacg ccccgagcac gtcaacatca agctcgggaa gaggtcgccg 4261 gtttaatccg gtggccgcgg gggtagaacc ccgtgcggga gatcgaagat ctctccctct 4321 cccttggacc actttcaggt gatccaacag gagctagctg gagcccctta cgggggtcta 4381 gcttggggga tgcacttcgc ag //