LOCUS BK013385 4575 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gephyllon.2_8 genomic sequence. ACCESSION BK013385 VERSION BK013385.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gephyllon.2_8 ORGANISM ssRNA phage Gephyllon.2_8 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Hohrdovirus; Hohrdovirus pedohabitans. REFERENCE 1 (bases 1 to 4575) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4575) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4575 MN033432.1 1-4575 FEATURES Location/Qualifiers source 1..4575 /organism="ssRNA phage Gephyllon.2_8" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786147" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Hohrdovirus; Hohrdovirus Gephyllon.2_8" gene 303..2006 /gene="Gephyllon.2_8_1" CDS 303..2006 /gene="Gephyllon.2_8_1" /codon_start=1 /product="maturation protein" /protein_id="DAD49936.1" /translation="MPIKLTGELRYDTRGLPEGYDPHKFYEYRRETLVNSATGVESFA YKYIPWELLKSFAFAIDPVAAFKVAPMAITPANRTKVRLTASVTQKRNRMYRKTHFGW GQEVNYRNVSICWAPYYSFDSWVYSPADTPATQQDPLADTLHDTTSRTRLLGSPMGEF DLFKSFINSPPRYVSEIRRIDIRYYFGDVEASCTAVGGSQQKGSGSLETETVGFYPTG GTLSKGNLEYLRTSEISYCKSLCSRNLVSMLKDYSPKRREYAYFRNLAELRDLPRSIA SLQNSLTSYYTLWHSLATQPSLRKRIFDLKVAASTIPNEYLSFHFGWRQTYNDLMDLL ALPEKLLKKNDFLISRAGKPTTFRVTRDFPSSETAPLSFDYDTAGFEYERTSTSRLER TSQVRLVINAIFDFPKANVPRFRYEHFLERTGINPRITDIYNLIPWTWLVDWFTGFGN YVELIDNINQDQNLINWGLISCRTQGRLITDFQSKTYMVDDVYETPGAHVQTLSPNIN RHTSILEYECHTRTDVATILDVKRTSVPSSLTGYQQSIIGALLLQRTEILGKNTFRVR S" gene 2030..2398 /gene="Gephyllon.2_8_2" CDS 2030..2398 /gene="Gephyllon.2_8_2" /codon_start=1 /product="coat protein" /protein_id="DAD49937.1" /translation="MLPDPVTVAAASPTPSLVFTIVKQDGYGSERNDTGGNGYSVIIQ HQKQKGGGDRHYVQMTQVVNAVDPYSGLTKKQTASVSFTIVRPSFGFTDAAMVALAKA LTDFRDDSEVTTARLLQFQS" gene 2420..2695 /gene="Gephyllon.2_8_3" CDS 2420..2695 /gene="Gephyllon.2_8_3" /codon_start=1 /product="hypothetical protein" /protein_id="DAD49938.1" /translation="MRLREVFPIGPIAGCFALSFVVSGFVLFMSMNSCHFDRSVQMSL LFGGAQYSSFRWSLVCMTRSSLPHGGENEKSANAPVQPLARFPEVEP" gene 2634..4460 /gene="Gephyllon.2_8_4" CDS 2634..4460 /gene="Gephyllon.2_8_4" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD49939.1" /translation="MKSPLTLLSSLWQDFQRLNPDVKGLKRDIISFQRRFEHEGYSFL TIALPSLGDALTQGLATGQFACPEGFKKIPRGAIPRICSGMFCEVFDPCTGKLKEDAD LGVVKCLREGLYLFKKVRLLTLEEEILHKKATETFARCDMIAGRVIIPERESHLISSI AKVVLYGQSSKPTSELRLKHGPGAVFEGLKGNQKWSSLTESVRNADFDLDTYGYSDFG YYLSPFEERAGTTDSADKERLSTLASRRTAKLISVPKNSTSRRTITMEPLLNQFVQQG LNLELRSMIERDPILSISLALTDQSLNQKLALAGSLTDDWATIDLKSASDLMSVKLVK LVFGGHGQFFDLMMECRSTSVVCSEYEIHGLGKFAGQGNALTFPVMSVCLTVICIAAI LDARGVQASYWNVKRAARQLRVYGDDIIVGRKYAHQCVTWLERVGFIVNQSKSFLKGN FKESCGVDAFRGVNVTPLYIGYRPDDQSSEPNVIAGLVATSNLAWLRGLYKFSTCLAE EVEYRLGTELPLVSQKSGSLGWHSRLDAMNPTRWNRRTQELETRVLVLKPLKRRDRLD GYAALLKFFHVPLLGRAVDHLEKSPVRFRNRLAKTWVPTHVG" ORIGIN 1 cgtataagac cgtttccagt ctaactcccc ggcaccgcct gcgaagcggc cgtaaagctt 61 tcccactccg tcacgaattg gagtagaaat tacgacaagc gcgtttagga ttgctttgcc 121 atgttctcat ccgtttttgc ggtctttctc cgcatattag atgtggctca gacttcttct 181 caaattgtca atccagacac ttttttacgg tgtccttgcg cggtgaagtg aggttgagtc 241 ttgtctccat gccatcattt ctgatggtca catacctttt cacatcagcg gagactagga 301 ttatgccgat aaagcttaca ggggaacttc gttatgatac acgaggcctc cctgagggct 361 atgatcctca taaattttat gagtatcggc gtgaaaccct agttaacagt gctaccggtg 421 tggagtcgtt tgcctataag tacatccctt gggagcttct aaagtctttc gctttcgcga 481 ttgacccagt ggctgctttt aaggttgcac caatggcaat tacgccagca aatcgaacta 541 aagttcggct cacagcatcc gttactcaaa aacggaaccg aatgtatcgt aagacacatt 601 tcgggtgggg acaagaggtt aattaccgta atgtctccat ttgttgggcg ccctactata 661 gttttgatag ctgggtatat tctccagcgg atacccctgc aacgcagcag gacccgttgg 721 ctgacacact ccacgacacg acctctcgaa cgcgccttct tggatcgccg atgggggaat 781 ttgatttgtt caaatccttc atcaactctc ctcctaggta cgtttctgag atccgtcgga 841 tagatatccg ttactatttc ggtgacgttg aggcctcttg cactgctgtt ggcggaagcc 901 agcagaaggg tagtgggtct ctagaaactg aaacagttgg tttctatcca accggtggca 961 cgctgtccaa aggcaatctt gagtatctaa gaacctcaga gatatcttat tgcaagagct 1021 tatgctctcg taatctggta tctatgctga aggactactc tcctaagcgt agagagtatg 1081 cctactttag gaacttagca gagttgcgtg atttgccacg gagtattgca tcactgcaga 1141 attccctgac aagttactac acgctctggc actccctggc tacacagcct tcacttcgaa 1201 aaagaatttt cgatctgaag gttgctgcca gcacgatccc gaatgaatat ttatcttttc 1261 attttggatg gaggcaaact tataacgacc tcatggactt gttggctctc cccgagaaac 1321 ttttgaagaa aaacgacttc ttaatttctc gggctgggaa accaacgacg ttccgggtga 1381 caagggattt cccttcatcc gaaacggcac ctctaagctt tgactacgat acagcggggt 1441 ttgagtacga aaggacttct acctcgcggc ttgaaaggac gtctcaggtg cgtttagtga 1501 taaacgctat ctttgatttc cctaaagcca atgtaccgcg gttccgctac gaacattttc 1561 tcgagcgaac cggaatcaat ccaaggatca cggatatata taatcttatt ccgtggactt 1621 ggctagttga ttggtttact ggttttggta attatgtcga gttaatcgac aatattaacc 1681 aagatcagaa tctaatcaac tggggtctaa tctcctgcag gacgcagggg aggttgatca 1741 ctgattttca gtcaaagact tatatggtag acgacgtcta tgaaacgcca ggagcccatg 1801 ttcagactct tagtccgaac ataaataggc acaccagcat tctagagtac gagtgtcata 1861 cacgtacgga cgtcgctacc atccttgatg tgaaacgaac ctctgtaccc tcaagtttga 1921 cagggtatca gcagtccata atcggcgccc tgctcttgca gcgcaccgag attctgggaa 1981 agaacacatt ccgtgttcga tcctaaaacc cattacaagg agatacgtca tgctacccga 2041 cccggtaacc gttgcagctg cttcgcccac gccctccctt gtcttcacga tagtgaagca 2101 agatggctat ggatcggagc ggaacgatac tggtggtaac ggttattccg ttatcatcca 2161 gcaccagaag cagaaaggcg gaggtgaccg ccactacgtc caaatgacgc aggtggtcaa 2221 cgctgtcgat ccgtattctg gcctgacgaa gaaacaaact gcgtcagtgt cgttcacaat 2281 cgtgcgtcct tcgttcggct tcaccgacgc ggccatggtc gcgctggcga aggcccttac 2341 ggactttcgc gacgattctg aggttaccac tgccagactg ctgcagttcc agtcctagaa 2401 cctcttgaag gagctcatta tgagactccg ggaggttttt ccgatcggtc ctatagcagg 2461 ctgttttgca cttagcttcg ttgtgtctgg gttcgtactc tttatgagca tgaactcatg 2521 tcatttcgat cgctctgtgc aaatgtccct cctttttgga ggggcgcagt actccagctt 2581 tcgctggtct ctggtttgca tgactcggag ttccctacct catggaggag agaatgaaaa 2641 gtccgctaac gctcctgtcc agcctctggc aagatttcca gaggttgaac cctgatgtga 2701 aaggcctgaa acgggatatc atctcgtttc agagaaggtt cgaacacgaa ggctatagtt 2761 tccttactat agctttaccg tccttaggtg acgcccttac tcagggcttg gccactggac 2821 agttcgcctg cccggaagga tttaagaaaa tcccccgggg agcaatcccg agaatttgtt 2881 cgggtatgtt ctgcgaagtg ttcgatccat gcaccggcaa acttaaagag gacgccgact 2941 taggcgtagt taagtgcctc agagagggac tttatctctt taagaaagtg cgtctgttga 3001 ctttggaaga ggaaattctt cataagaagg caacagaaac atttgcgagg tgtgatatga 3061 ttgccgggcg ggttattata cccgaacggg aatcgcatct catctcttcc attgctaaag 3121 tcgtgcttta tgggcaaagt tctaagccca caagcgaatt gcggctgaag catggacccg 3181 gtgcggtgtt tgaagggcta aaaggcaacc agaagtggtc gtctctcacg gagtcagtaa 3241 ggaatgctga cttcgacctt gacacgtatg ggtacagtga tttcggctat tacctctctc 3301 ctttcgagga gagggccgga accacagact cggcggacaa ggagcgcctt tcaacgctcg 3361 cttctcgtcg cactgccaag cttatctctg tgccgaagaa ttcgacatcg agacgtacta 3421 ttactatgga acccctactg aaccaatttg ttcagcaagg gttgaactta gagttgcgtt 3481 ctatgattga acgtgaccct atccttagta ttagcttggc tttaaccgat cagagcttga 3541 atcaaaagct tgctctggcc ggctccttga ctgacgactg ggcaaccatc gacttgaaat 3601 ccgcgtcgga cttgatgagc gtaaagctcg tcaagctcgt ctttggaggt catggtcaat 3661 tctttgacct tatgatggag tgccgctcta cctctgtcgt gtgctcagaa tatgagattc 3721 acggcttagg taagttcgct ggccaaggta acgctctcac gttcccagtc atgtctgtct 3781 gccttacggt gatctgtatt gcagccattc ttgacgctag aggtgttcaa gcctcttatt 3841 ggaacgtgaa gcgcgcggcg aggcaacttc gagtctacgg tgatgatatc atcgtaggca 3901 gaaagtatgc tcatcagtgt gtaacctggc ttgagagggt tggcttcatt gtcaaccaat 3961 ccaagagctt ccttaagggt aactttaagg agagctgcgg tgtcgacgcg tttagggggg 4021 tcaacgtgac tcctctatac atcggatacc gtccagatga ccagtcttca gagcccaatg 4081 ttattgccgg gcttgtagcg acctcgaacc tagcatggtt acgaggccta tacaagttca 4141 gcacctgtct ggccgaagag gtggagtacc gattaggaac ggaactccct ctcgttagtc 4201 agaagtctgg ctcattgggg tggcattctc gtcttgacgc gatgaatccg actcgttgga 4261 atcgtcgcac acaggagctc gaaactcggg ttcttgtgct gaaaccgctg aaaaggcggg 4321 atcggttaga cggctatgcc gcactactca agtttttcca cgttccgctt ttagggcggg 4381 ctgtggatca tcttgagaag tctccagtgc gatttcgaaa tcgcctggcg aagacttggg 4441 tgcctactca cgtaggttaa atcgtcagcc tagtaggcgg acgtcagaga tggctacaat 4501 tcacagtcgc cggggctcat gagccccggg ttgaatccca cctattcagg ggatcccctg 4561 tgaaagcttc ggttc //