LOCUS BK013535 4243 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gephyllon.2_9 genomic sequence. ACCESSION BK013535 VERSION BK013535.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gephyllon.2_9 ORGANISM ssRNA phage Gephyllon.2_9 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus arvicola. REFERENCE 1 (bases 1 to 4243) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4243) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4243 MN033920.1 1-4243 FEATURES Location/Qualifiers source 1..4243 /organism="ssRNA phage Gephyllon.2_9" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786148" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus Gephyllon.2_9" gene 89..1402 /gene="Gephyllon.2_9_1" CDS 89..1402 /gene="Gephyllon.2_9_1" /codon_start=1 /transl_except=(pos:89..91,aa:Met) /product="maturation protein" /protein_id="DAD50475.1" /translation="MIRRPEELWCLLPIVARRRDLPFPGWTAKLQTTYENIPGRVDVS KTSNPATGWQGTQYTESENHPQWRPDKRGVFQGDVGGNFLSQKKVVTAGAGFTHRLTA VSSDPIGRRAIYLYDGPVLPCGPTNSLAPLPPYIKSGKTTLDAWGTRAIARCKPTNRV ASALQACIEIYHEGLPKAIGSTLWKSQVHAAKRAGDEVLNYQFGLAPLAGDIASFAAG VVGMDQILAQYERDAGRVVRRRFEFPPEVSEDWSVLVEGTDAFVEGFNALYKTSSQRS KGRIVRHRTTYVRRWFSGAFTYYIPPRDRKDGTVKHTSLARKLLGIELTPELVWNVAP WSWAVDWVTSAGDVISNLTSWAQDGLVMRYGYIMEHSLVRDEIVFAGSTGLQSSGSLP PIVTLLAESKVRQAATPFGFGLLLSNFSTRQKAIMAALGLTKIFH" gene 1465..1827 /gene="Gephyllon.2_9_2" CDS 1465..1827 /gene="Gephyllon.2_9_2" /codon_start=1 /product="coat protein" /protein_id="DAD50476.1" /translation="MSFTDPQTVTISAVTTPLPRTSVEENGSEYTSADGLIKLTASHD YGRRARRMLRIDTSKMAPDPFRPVENVKVSMSCYMVFDLPLAGYTATEALAVYTGFKT QYSAGSDALIVKLLGGES" gene 1936..2190 /gene="Gephyllon.2_9_3" CDS 1936..2190 /gene="Gephyllon.2_9_3" /codon_start=1 /product="hypothetical protein" /protein_id="DAD50477.1" /translation="MSFVCSVTSCSSVHLVDRRPAGVNSIRVGVTFDGSRYRDLNIIQ VTIHVGANHRESEHVAFQRFLQALYDLREATVPLRDHHRI" gene 2241..4139 /gene="Gephyllon.2_9_4" CDS 2241..4139 /gene="Gephyllon.2_9_4" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD50478.1" /translation="MKSLTSLWSCTAQEMAVRCRTSATNDIKTVVSRAEHEGLSFLAI TLADFGKATQKWLDQGHVVPWDVPAFKQNRLTGLPLFLGGFLGRVFDPCSGTLLDNPD IEAIYAIRQLTLMFSKIALPRIASNGDPMVVKYRHRERLAMSEFVKCEQDVRRADSLL DPSYKADFRRMSSLLFNDVFAKMDRDVHFARLVPKHGPGAVADRLSSNAKYNLRTWTT RLERLMPAEEFLIPNLSFRKDLDRNLNILEPGAETPVRVVSVPKTLKTPRIIAMEPTA MQYVQQALRHSLLDAFREDGFLSRVIGFNDQEPNRQMALRGSLSGDLATLDMSEASDR VSNQLVREMLADFPELLWAVDACRSRKADVPGHGVIRLAKFAPMGSALCFPFEAMVFL TLILLGIERELNAPLSRRQVVNLFSEQVRVFGDDLIVPRDYVLSVVNELHVFGHVVNV SKSYWTGRFRESCGREYYDGHDVSIVKVRQVLPTQRQDASGVNAASELRNQFYWTGLW RSAAWMDIYLKDLLREYPNVAPSSPLVGRESVLGYEFQRLSPNCQGPLTKGYFLTTKA PSDPLDGPGALLKCLFRYPWSGFGLNKPKRQRLRIDIDVASIDDEHLERTGRPEHVDI KLGWRSPF" ORIGIN 1 ggccccttgc ggggccctgg gcgcagtgcg gtgttttctt atcctatggt gagaatcatt 61 ctcactgttg gattcgattc ggatctttgt gatccgcaga ccagaggagc tctggtgcct 121 gttgcccatc gttgcaaggc ggcgcgatct gccctttcca gggtggaccg caaagctgca 181 aacgacgtat gaaaacatac cggggcgggt agacgtttca aaaacgtcaa atcccgcaac 241 ggggtggcag gggactcagt ataccgagtc cgaaaatcat cctcaatggc gtcccgataa 301 acggggcgtc tttcagggtg acgttggcgg caactttctt tcacaaaaga aggttgttac 361 tgcaggtgct ggctttactc atcgccttac ggcagtgagt agtgatccca taggacgtag 421 agcgatctat ctttatgatg gaccggtctt gccctgtggg cccacaaata gcctggctcc 481 cctcccacct tacattaaga gtggtaaaac cacccttgat gcttggggga cgagagcgat 541 cgcacgatgc aagccaacga accgagttgc gagtgctttg caagcatgca ttgagattta 601 ccacgaaggt ttgccgaaag ctatcggctc aactttgtgg aagtctcaag tgcatgctgc 661 caaacgagct ggggacgaag tcctcaacta tcagtttggc ctcgctccac ttgcaggcga 721 cattgccagc ttcgcagctg gtgtcgtcgg catggaccag attctcgctc aatatgagcg 781 ggacgctggc cgagtggttc gacgtcggtt tgaatttcca ccggaggttt ccgaagactg 841 gtctgtgctt gtcgaaggca cagacgcctt tgtggagggc tttaatgccc tctacaagac 901 atccagtcaa cggtctaagg gccgaatcgt ccgacatcgt actacgtatg tcagacgatg 961 gttttccgga gctttcactt attacattcc tccgagagat cggaaggatg gaacagtgaa 1021 gcatacctcg ctagctagaa agctgctagg tattgagctc actccagagc tcgtctggaa 1081 tgttgccccc tggagctggg ccgtcgattg ggttaccagt gcgggagatg tcatttcgaa 1141 tctcacgtcc tgggctcaag acggtctggt gatgcgatac ggctacatca tggagcattc 1201 acttgtccgt gatgaaatcg tattcgcagg ttccactgga cttcagtcca gcggttcctt 1261 gcctcctatc gttaccttgc tcgctgagag taaggtgcga caggctgcaa cacccttcgg 1321 gtttgggctt ctgttgagta atttctcaac tcgacagaag gcgataatgg cagctcttgg 1381 tttgaccaag atcttccatt aagacaccat ctgtgcccat taccgccaat agggggtcta 1441 accgggcccc taggagtgat gcctatgtcg ttcaccgatc cgcagaccgt cacaatctcg 1501 gcagtcacga cgcctctccc acgcactagc gtggaggaga acggaagtga gtacacgagt 1561 gcggacggtc tcatcaagct gaccgccagc catgactatg gcaggcgggc cagaaggatg 1621 ctgcgaatcg acacttccaa gatggctccg gacccgttcc ggccagtgga gaacgtcaaa 1681 gtgtccatgt catgttacat ggtctttgac ctccccttgg ccggttacac ggcgacggaa 1741 gccttggcgg tgtacactgg gtttaagacc cagtactccg ccggctcgga cgccctgatc 1801 gtgaagttgt tgggaggcga gtcctaacgg acaagtcccc ccttcaaccc gtgaccagga 1861 cggggcggtc aaaacggcat gacgaaggta ctccgatcac gaagaaagtc ctcgtgatcg 1921 ttgttgccat cgttaatgtc gtttgtctgc tcagtgacca gttgctcttc ggtccatctt 1981 gtggaccgta gaccagctgg agtgaactcg atacgtgtgg gtgtaacttt tgatggaagt 2041 cgctatcgcg acttaaacat cattcaagtt acaattcacg ttggtgcgaa ccaccgtgaa 2101 tcggaacacg tagctttcca gcggtttctg caggcgttgt atgacctgcg tgaagccact 2161 gttccgctgc gtgaccacca ccgtatctag tctaggcgac gtaggctagg gatgatacac 2221 cttctgaata aggagggatc atgaaaagcc tgacgtcact ctggtcctgc acagctcaag 2281 aaatggctgt gcgatgtcgc actagcgcca ctaacgacat aaaaactgtc gttagtcggg 2341 ctgaacacga ggggctatcg tttttggcga taaccctggc ggactttggt aaagctaccc 2401 aaaagtggct agaccaaggt cacgtcgtcc cttgggacgt tcctgctttt aagcagaatc 2461 gtcttactgg tctcccccta tttctaggag gtttccttgg acgtgtgttc gacccttgta 2521 gtggcacgtt gcttgataat ccagacatcg aagcaatcta tgctatccgt cagctaacgc 2581 tgatgtttag caagatagcc cttccgagga ttgccagtaa tggtgatcct atggtggtta 2641 aataccgcca tcgcgaaagg ctagcgatgt ctgagtttgt caagtgtgag caggatgttc 2701 ggagagctga ctctcttctg gatccgtcct acaaggcgga ttttaggaga atgtctagct 2761 tgctttttaa cgatgtcttt gcaaaaatgg acagagatgt ccattttgct aggctcgttc 2821 ctaagcatgg gccaggcgct gtcgcagatc gtcttagtag taatgctaag tacaatctgc 2881 gaacctggac cactcgactc gaaaggctaa tgcctgccga ggaattcctt atccctaatc 2941 tttcctttcg gaaggatttg gataggaatt tgaacatcct cgaacccggc gctgagactc 3001 ccgtaagggt agtctcagtg cctaaaacgc tcaaaacccc aagaatcatt gcgatggaac 3061 ctactgcaat gcaatatgtg cagcaggctc tccgtcacag tcttcttgac gcgttcagag 3121 aggatggttt cctctcccgc gtgattggtt tcaacgacca ggagcctaat aggcaaatgg 3181 cgttgagagg atcgctcagc ggcgacctcg ctacactcga tatgagtgaa gcttccgata 3241 gggtttcgaa tcagctcgta cgcgaaatgc tcgccgactt cccagaattg ctatgggcgg 3301 tcgatgcgtg cagatcgcgg aaggctgatg tgcctggtca tggcgtaata cgcctggcca 3361 agttcgcgcc tatgggttca gctctctgct ttccttttga ggccatggtc ttcctgaccc 3421 tgatcctctt gggaatagaa agggagctca acgctccgct ttctcggagg caggttgtca 3481 atctgttctc cgagcaggtg cgtgtcttcg gggatgatct aattgtcccc cgagactatg 3541 tgctgtccgt tgttaacgaa ctacatgttt ttggacatgt ggttaacgtt agcaagtctt 3601 actggaccgg aaggttcagg gagtcttgcg gacgggagta ctatgacggc catgacgtta 3661 gtattgtcaa ggttcgccag gtacttccga cacaacggca ggacgcgagt ggggtaaatg 3721 ctgcttctga gctccgtaac cagttctatt ggactggttt gtggcgctcg gctgcatgga 3781 tggatatcta cttgaaggac ctccttcggg agtatccgaa tgtagctcca tcctccccat 3841 tggtgggcag ggaatcggta ctgggatatg aattccagcg cctttcccct aattgtcaag 3901 gccctctaac caagggctat ttcttgacaa ccaaggcacc gtctgatcca ctagacgggc 3961 cgggtgccct cctcaagtgt ctcttccgat atccctggtc cggtttcggc cttaataagc 4021 cgaagcggca gcgactaaga atcgacattg atgttgcgag catcgatgat gagcacttgg 4081 agcgtactgg acgccccgag cacgtcgaca tcaagctcgg gtggagatcg cccttttaaa 4141 gaggcgattg ggacttaggt cccgcgggag agcggaagct ctcttctcct actttaagga 4201 ccagctttta ggttgatcca aaaagaggag tttgagtgga tcg //