LOCUS BK013479 4129 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gerhypos.1_16 genomic sequence. ACCESSION BK013479 VERSION BK013479.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gerhypos.1_16 ORGANISM ssRNA phage Gerhypos.1_16 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus pedohabitans. REFERENCE 1 (bases 1 to 4129) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4129) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4129 MN034582.1 1-4129 FEATURES Location/Qualifiers source 1..4129 /organism="ssRNA phage Gerhypos.1_16" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786197" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus Gerhypos.1_16" gene 106..1395 /gene="Gerhypos.1_16_1" CDS 106..1395 /gene="Gerhypos.1_16_1" /codon_start=1 /product="maturation protein" /protein_id="DAD50270.1" /translation="MPTLVPRTKTENVLVPRYEEFNDSSRTKQPVVQGQEKLGQVTSK LWRSEGHPLNRVTGVREGGGPFHVTHTGQFVDPCYVTEICRTKSGQDLFYTGPIYGNF ISSASIGSNYKGIVKDQDEKSMNADGATAISQCSPTNPTAQMGVTLGETMREGLPSLF GINSWKRRTALAKSAGDEYLNYQFGWAPLQSEVHNVVNAARHHRDIMQNYARNEGRNT HRSFHFPDVVQRWEEQVPPQYFANPLNNSSGYFLGVSTSPICTVSVEKRTKRWFEGCF TYGGPAKADNFDRHIGFGYEADNLYGLELTPDVLWNLTPWSWAVDWFSNAGDVIHNIS SFGQAGLVMRYGYMMSETQEIYSTNYSDQEMRFRGSAPGAPKSYYTKVVGGSSIGLKT TEKSRCPANPFGFGVGWEGLSPTQLAITAALGITRAL" gene 1457..1828 /gene="Gerhypos.1_16_2" CDS 1457..1828 /gene="Gerhypos.1_16_2" /codon_start=1 /product="coat protein" /protein_id="DAD50271.1" /translation="MALTDPQKFKEVVGTEVTAPRVAVGDFKSVYETSDGLNKLTLST TETGSNRKRHLVRIDVEKLATNIYEESKKQAVSMSVYLVVDRPVNGYSVAEAKKLVEG LVGLLSASTYSLTEKVLGGES" gene 2178..3989 /gene="Gerhypos.1_16_3" CDS 2178..3989 /gene="Gerhypos.1_16_3" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD50272.1" /translation="MKSLIALWNVLANELASRCSTSTTKDINTVLERTEHEGLSFLTI TLPTYGKDFQFCLDQGFVTPESFSSFRKTGSCLPSFLRGFTELVFDSGSGVLLSEPDI EAIYAVRQLTLIFSKILLPCTPERERKAMSDYVQCDMEVKNVEACLPDSDVDEFGRMA QLLFGDVFSNLDRKIWEGEIIPKHGPGAVAERLTSNGKYRTQYWTDRLEEVFHVGDFL YPNARFIESDYEEDGIDFHEPGSEIPSRVISVPKTQKTPRIIAIEPSSVQYVQQGILE VLMSSIHSTFLSDFIGTESQEPNQLLAQKGSGDQTLATLDLSEASDRVSSKLVRTLMR NFPLSEKAVFACRSERASVPGHGVIPLAKFASMGSALCFPYEAMVFLTIIFLAIEREQ GHQFAKKSEFLDFLGRVRVYGDDLIVPVDYVHTVVDFLESFGAKVGLSKSFWNGKFRE SCGKEYYDGHDVSIVKVRRLFPSQRQQVAEVVSLIELRNQMYSFGNWVTVKWLDGKIE GLIRFYPKVLPSSPALSRHSFLGYVSEKEDEYLHRPLVKACVVSSASPRDPLEGPGAL LKYFLKRGVEPTFDESHLERAGRPRNVYIKTRWVPPY" ORIGIN 1 cccgggctta actggtgaaa gcaatatatc accagcgccg ggcctgctgt gcataaccca 61 ctattgcgag taatcgcaaa acacaagaag ggaacttact acatcatgcc tactctagta 121 ccccgtacta agacggagaa cgttctcgtt ccccgttatg aggaatttaa cgattcctca 181 cggactaaac agcccgtagt gcagggtcaa gaaaaactag ggcaggtaac ctccaaatta 241 tggaggtcgg aaggacatcc cttaaaccgg gttaccggtg tgagggaagg cggaggtccg 301 tttcacgtga cccatacggg gcaatttgta gacccctgtt atgtgactga gatttgccgt 361 actaaatcag gccaggattt gttttacact ggcccgatat acggtaattt catctcatcc 421 gcgagtattg gatctaatta caaaggtatc gtcaaagatc aggatgaaaa atccatgaac 481 gctgacggtg ctactgcaat tagccaatgc tctccaacta atcctacggc gcagatgggc 541 gtaaccttgg gtgagaccat gagagagggt ttaccttctc tttttgggat caactcttgg 601 aaacgtcgta ctgcccttgc caagtcggca ggtgacgagt atttgaacta ccaatttggg 661 tgggcaccac tacagagtga agttcacaat gtagtaaatg ccgcccgtca tcaccgtgac 721 ataatgcaaa attatgcacg gaatgaaggt aggaatactc accgtagttt tcattttcct 781 gatgtagtgc agaggtggga ggaacaagtt cctcctcaat acttcgcgaa tccactcaat 841 aattcgagtg gttattttct cggagtatcc acctcaccaa tttgtacggt ttccgttgaa 901 aaacggacta agcgctggtt cgagggatgt tttacctatg gtggcccagc caaagctgac 961 aactttgacc gccacatagg attcggctac gaagccgata atctctacgg acttgagctt 1021 acgccagatg ttctctggaa ccttactcct tggagttggg ccgtcgattg gttttcgaac 1081 gctggagatg ttattcataa catctctagt ttcggccaag ccggtcttgt tatgcggtat 1141 gggtatatga tgagtgaaac tcaagaaata tactccacga actatagtga tcaggaaatg 1201 aggttccggg gaagtgctcc tggagcccca aagtcctatt acactaaagt agttggcggt 1261 tcctctatcg gtcttaaaac gaccgagaag agtcgctgcc ccgcaaaccc cttcgggttt 1321 ggtgttggtt gggagggttt gtcacctacc caactcgcca taactgcagc actcggtatc 1381 acccgggcgt tgtagtagtt gtttactact acgtaaccta ggtggcacga gccaccgttc 1441 ctaaaggagt gtgcctatgg cactgaccga cccgcaaaaa ttcaaagaag tcgtcgggac 1501 cgaagtgact gccccccgcg ttgcagtggg ggacttcaag tcggtttacg agacttccga 1561 tggcctgaac aagctgactc tgtctacgac ggagaccggc tcgaacagaa aacgccatct 1621 agtgcggatc gacgttgaaa agctagctac caatatctac gaagaatcca aaaaacaggc 1681 agtctcaatg agtgtttatc tcgttgtaga tcgtcctgta aacggatact ccgttgctga 1741 agcgaagaaa ctggttgaag gccttgtcgg tcttctctca gcttcaacct acagcctcac 1801 cgaaaaagtc ctcggcggcg agagttaaac ctcgtacgcc tctggactat ctcatagagc 1861 tcaaacttgg gcactatggg taggttgtga gatattctcc tctttttcac ttcaacttga 1921 agtgattgag gagttcctat ttgaaaggag gtagccttgc gcggcgatta tgattatcac 1981 cacgcgacct cgggtcagca acatgccgtg acgatctttt tgattgtcat tgtcatgtgc 2041 gttctcgggg ggcttttcat aggcctgaac attcttgacc acctttagga tggtcgtacc 2101 ggttttggaa cgccggtatt gaatgttctc ccttcagtac gataggctaa ggataaccac 2161 ctctattagg aggggctatg aaaagcctga tcgcactctg gaatgtgtta gccaatgaat 2221 tggctagcag gtgtagcact agcaccacca aggacattaa taccgtcctt gagcgaaccg 2281 aacacgaggg attatcgttt ctaacgataa ctcttcctac ctatggaaaa gactttcagt 2341 tttgtcttga ccaagggttt gtaactcccg aatccttttc ttcctttcgg aagactggat 2401 cgtgtctccc ctcatttttg agaggtttca cggagttggt gttcgattct ggttctggtg 2461 tccttttgtc tgagcccgac attgaagcaa tctatgctgt aagacaattg actttgatct 2521 tcagcaagat ccttctacct tgtactcccg agagggagcg caaggctatg tcggactacg 2581 tccaatgtga tatggaggtc aaaaatgttg aagcctgtct gcctgattct gatgttgatg 2641 aatttggccg tatggctcaa cttttgtttg gagatgtctt ctctaaccta gatcgaaaga 2701 tctgggaagg agagatcatt cccaaacacg gtcccggtgc tgtcgctgag agacttacca 2761 gtaatggtaa gtatcgaacg cagtattgga ccgaccgtct ggaggaagtc ttccacgttg 2821 gagatttcct ttaccccaat gcccgattca ttgaatcgga ctatgaagag gacggtattg 2881 acttccacga acccggttca gagatcccat ctcgggtaat ctctgttcct aagacgcaga 2941 agacgcctcg cattattgcc atcgagccct catctgtaca atatgtacag caggggatac 3001 tcgaggttct aatgtcgagt attcactcaa ctttcttgag tgattttatc ggaactgagt 3061 ctcaagagcc taaccagctc ctggctcaga agggttctgg agatcagacc ctagccacgc 3121 ttgatttaag tgaggcttct gatagagtgt cttctaagct cgtaaggacc ctcatgcgga 3181 acttccctct cagtgagaag gccgtttttg catgtaggtc cgaacgggcc tctgttcctg 3241 gtcacggtgt gataccgttg gccaagttcg catctatggg ttcggctctt tgtttccctt 3301 acgaggcgat ggtttttctt accatcatat tcctcgcaat agagagagag caaggacacc 3361 agttcgccaa gaaatctgaa tttctagatt ttcttggcag ggtgcgtgtc tacggagacg 3421 atttgatcgt ccctgtggat tatgtgcata ccgttgtaga ctttcttgag tccttcgggg 3481 ctaaagttgg tctcagcaag agcttctgga atggtaaatt ccgggagtct tgcgggaagg 3541 agtattacga tggccatgac gtttccattg tcaaggtccg tcgtttattt ccttcacagc 3601 ggcagcaggt tgctgaggtg gtgtcactta tcgaacttag gaaccaaatg tattcatttg 3661 gtaactgggt tactgttaag tggctagatg gaaagattga agggttgatt cgtttctacc 3721 ctaaagtcct tcctagctcc ccagcgttga gtcgtcattc ctttcttggt tatgtttctg 3781 agaaagaaga cgagtacctt cataggcctt tggttaaggc ctgtgtggta tcgtcagctt 3841 ctcctcgaga tcctctcgag ggtcctggcg ctctgctcaa gtactttctt aagcgtggcg 3901 tagaacccac gtttgatgag agtcacttgg aacgtgctgg acgtcctcgt aacgtctaca 3961 tcaaaacgag gtgggtaccc ccttactaag gggatccctg gactattgtc taatatgaca 4021 ataggctctt aattgagcct gggagagcgt tgtagctctc ttgtactcca cagaggggag 4081 cactccccag cgaaagctgg tggggtgtaa ctttcttgcg ggtacacgg //