LOCUS BK013494 4463 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gerhypos.2_35 genomic sequence. ACCESSION BK013494 VERSION BK013494.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gerhypos.2_35 ORGANISM ssRNA phage Gerhypos.2_35 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus chthonadaptatum. REFERENCE 1 (bases 1 to 4463) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4463) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4463 MN034742.1 1-4463 FEATURES Location/Qualifiers source 1..4463 /organism="ssRNA phage Gerhypos.2_35" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786269" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus Gerhypos.2_35" gene <1..1389 /gene="Gerhypos.2_35_1" CDS <1..1389 /gene="Gerhypos.2_35_1" /codon_start=1 /product="maturation protein" /protein_id="DAD50322.1" /translation="LNCRGVGPNWREGTLWDLTVVLSLLRVMPTRKRYIADSDSQLGS ATLSTWVRRKTSSVKELYVSQTRRQVELAPDKKGKQITVSENHNWNGRRNKPSSPGDV GGPFFTEKSGIRVVNPTRRRLTGSIQWDQNSQYWSEAEYIGPVLACSPSSAIIPSSAK SSKSALLAMGTEAIARCKPTNSVADVATAIAELYSEGLPKLAGSAFWERKAFTGREIG DEYLNQEFGWKPMVSDVRSICEAVASSHAILKAYEEGSGSIVRRRYEFPESYSETTVQ GAATDFAVLSGSNSPALRDPLKPPAVLYQRSVQTKKVWFSGAFTYHLPTGFKSRNAME RLSAKANVLLGTDLTPEVLWNAMPWSWAVDWFSNAGDVISNLSDWSTDGLVLKYGYVM EHSSASNTYFQIDGGKMFTPNIIGSPVVAYVETKQREVATPFGFGLNWDAFSPRQWAI TAALGLSNQKRL" gene 1448..1816 /gene="Gerhypos.2_35_2" CDS 1448..1816 /gene="Gerhypos.2_35_2" /codon_start=1 /product="coat protein" /protein_id="DAD50323.1" /translation="MSFADPLSITISAATSSLPRVSVEGDESQYTSGDGLITVTASHD EGREQRHRRLLRIDHSKLAPDAFRPSENVKVRMSHYLIFDVPVGGYTTAEQLAVYTGF KAMYSATSDALITKLLGGES" gene 1906..2043 /gene="Gerhypos.2_35_3" CDS 1906..2043 /gene="Gerhypos.2_35_3" /codon_start=1 /transl_except=(pos:1906..1908,aa:Met) /product="hypothetical protein" /protein_id="DAD50324.1" /translation="MRSDEGLTIFLKINYKVILLMVVALDIAHVSINEILGDAIHGIF Y" gene 2103..2354 /gene="Gerhypos.2_35_4" CDS 2103..2354 /gene="Gerhypos.2_35_4" /codon_start=1 /product="hypothetical protein" /protein_id="DAD50325.1" /translation="MTLNEAILKEAANYYYSVEKLRVLALLYIPEDATARDARAWLDS QRAGLPPAVVKAVIHLHLKDNVLKEWRKEEMAPTLGSCP" gene 2523..4421 /gene="Gerhypos.2_35_5" CDS 2523..4421 /gene="Gerhypos.2_35_5" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD50326.1" /translation="MKSLMSLWSQVAEESATRCYTSATRDVKTVSGRIEHEGLSFLTI TLPGYGKSIQKWIDQGHVGIDSSFKTGRRGFPVFLQGFLNRVFDRNSGTLLDEPCIDS ILALRQLTLMFGKIELPCTRARDLKAIQNYIECEQDVRQFDMEFTDRDISEFRSMSNL LYSELFSAMDRDVYYGRILPKHGPGSTADHLSSNGKYEMQSWTRRLEEYFPSYEYLIP NGRFSADLDKVNILEPGEELPVKVVLVPKTLKTPRVIAMEPACMQYVQQGIYRSFLDN FARDELLKKLIGFDDQVPNQELARQGSLDGKTATLDLSDASDRVSNQLVKAMLSQWPH LSGAVDAARSRRAEVPGYGVIRLSKYASMGSALCFPIEALVFTTLIFVGIQRSLNVTL TRKHIKSLAKSVRVYGDDLIVPVESVSSVVHTLEHFGARVGVDKSFWTGKFRESCGKE YFNGQDVSIVRVRQALPSTTADVAGVISTVAFRNQLYTSGYWNTVRWLDNQLRKILRI YPDVEPTSPVLGRVSFLGYQAERMHPDHHSPQVRGYVVMAKAPSDELGGTGALLKCLL KLESGDLRGTWDSHIPEIPCYHTNMDHDASRGPSPWAPPMGQDEKHLERSGRPQHVNI KAGWWSPH" ORIGIN 1 cttaattgtc gtggtgttgg acctaattgg agggagggta ccctctggga cctaaccgtt 61 gttctcagcc ttcttcgggt catgccgacc cgtaagcgtt acatagcaga ttccgattca 121 caattgggat ctgcgacgct tagtacgtgg gttcgtcgca agacgtcctc tgtgaaagag 181 ttgtatgttt cacagacaag gcgtcaagtt gaacttgccc cggacaagaa ggggaaacag 241 attactgttt ccgaaaacca taactggaat gggaggcgaa ataaaccttc cagtccagga 301 gacgtaggtg gtcctttctt tacagaaaag tccggcattc gagtggttaa tcccacccgt 361 cgtcggctca ctggtagtat ccagtgggac cagaactcgc aatactggtc agaggccgaa 421 tatatcggtc ctgtccttgc gtgttctcct agcagtgcca tcattcccag tagtgccaaa 481 agctcaaaat ctgcgctttt ggctatggga actgaggcaa ttgccaggtg taaacctacg 541 aactcagtcg ccgatgttgc tacagctatt gctgagctct acagtgaggg tttacccaaa 601 ctggcgggtt cagccttctg ggagaggaaa gcatttaccg gtcgtgagat cggagatgaa 661 tacctcaacc aggagtttgg ctggaagccg atggtcagtg acgttcgcag tatatgcgaa 721 gcagtcgcct cttctcatgc cattttaaag gcatatgagg agggttctgg gtccatcgtt 781 cgacgacgtt atgaatttcc tgagtcctat tcagagacta ccgtgcaggg agccgctacg 841 gactttgcag tccttagcgg aagtaattcc cctgcgttac gggaccctct gaagcctcct 901 gcggtattgt accaaagatc cgtccaaacc aagaaggttt ggttttcagg tgcatttacc 961 taccatttgc ctaccggctt taaaagccgg aatgcaatgg aaaggctaag tgctaaagcc 1021 aatgtccttt tgggcactga cttaactcct gaggttcttt ggaatgcaat gccatggagt 1081 tgggccgttg actggttttc caatgcggga gatgtcattt cgaatctctc ggattggtcc 1141 acagacggtt tggtgttgaa atatggttac gtaatggaac atagttccgc ttcgaacaca 1201 tatttccaga ttgatggagg gaagatgttt actcccaaca tcattggctc gcccgttgtt 1261 gcttacgtgg aaactaagca acgcgaggtg gcaacacctt ttgggttcgg ccttaactgg 1321 gacgctttta gtccccgtca atgggccatc acagccgctc ttggtttatc taaccagaag 1381 cggttgtgag tgtttgtctg tgttgagcca ataggggtct gagacccagg ccctaggagt 1441 gatgcctatg tcgtttgccg atccattgtc catcaccatt agtgctgcga caagttcgct 1501 tccgcgcgta agcgtggagg gggacgagtc acagtacaca agtggggatg gcctaatcac 1561 agtgacggcg tcgcacgacg aaggtcgtga acaacggcac cgtcgactgc tgaggatcga 1621 ccactccaag ctggccccag atgcgttccg cccgtcggaa aacgtgaagg tgaggatgtc 1681 acactacctc atctttgacg ttccggtggg agggtacaca actgcggaac agcttgccgt 1741 gtacactggc tttaaggcca tgtactcggc gacgtcggat gcgctcatca ccaaacttct 1801 tggtggtgag tcgtaatcga gtcggagaac acgcctcggt ctttgaaaga tcgtccggaa 1861 ggacgattgg acaaagccat tgcgcgtttt tcggacaaca gatctgtgcg cagtgatgag 1921 ggattaacga tctttttgaa gattaactat aaagttattc ttcttatggt cgttgccctt 1981 gacattgctc acgtttctat taacgagata ctaggtgatg ccattcatgg tattttctat 2041 taatttagaa agtacctttg gcacatctag tgtcccttcc tctgtctcct ggaggtgaat 2101 tattgactct taacgaggca atccttaagg aagcagcgaa ctattactac tcagttgaga 2161 aactgagggt tctagctttg ctgtatatcc ctgaggatgc tactgcacgg gatgcccgtg 2221 cgtggcttga cagccaacgc gcgggtttac cccctgcagt tgttaaggca gtgatccatc 2281 tccacctaaa ggacaacgtc ctgaaggagt ggagaaaaga ggaaatggcc cctaccctgg 2341 ggtcatgtcc atagaaacta ccccctcaaa agggtaggat ctgctgtctg cctatctagg 2401 catctcggtg gtgagacggt cggagtacgc tagttagcgt agggcagggt gataaatcct 2461 gtccttccgt ctctcaagca acataggcta aggattcagt taccccctat ataggagggc 2521 tgatgaaaag cctaatgtca ctctggtccc aggtggcgga ggaatccgcc acccgatgtt 2581 acactagcgc caccagagat gttaaaaccg tctctgggcg gatcgaacat gaggggttat 2641 cgtttttaac aataacccta cctggctatg ggaaatccat ccaaaaatgg attgaccagg 2701 gccatgtcgg tatcgattct tcctttaaaa caggaagaag aggtttccct gtatttctac 2761 aaggtttcct caaccgtgtg ttcgaccgga acagtggcac gttgctcgat gagccatgta 2821 tcgactcaat acttgccttg cgtcagttaa cactgatgtt tggcaaaatt gagctcccct 2881 gcacacgtgc aagggatctt aaagcgatac agaactatat cgagtgtgag caggatgtcc 2941 gtcagtttga tatggaattt actgatagag atatcagtga atttcgttcc atgtcaaact 3001 tgctttatag tgagctcttt tccgcgatgg acagagatgt ctattacggt aggatcttac 3061 caaagcatgg tcctggatct acagcagatc atctttccag taatggaaag tatgagatgc 3121 aatcctggac tagacgactc gaggagtatt ttccctccta cgagtacctt attccgaacg 3181 gtcgtttttc ggccgacttg gataaggtga acatcctcga acctggggaa gagctacccg 3241 tgaaggtagt tcttgtccct aagacgttga aaacacctcg agtgattgcg atggaacctg 3301 cttgcatgca gtatgtgcag caagggatct accgcagttt tctcgataac ttcgcgaggg 3361 atgaactcct caagaagttg atcggttttg atgatcaggt tcctaaccag gaacttgctc 3421 gtcaaggttc ccttgatggg aaaaccgcaa cgctcgattt gagcgatgca tccgatcgtg 3481 tttccaatca gctcgttaag gccatgctta gtcagtggcc ccatttgagt ggggctgttg 3541 atgcagctag gtctcgacgg gctgaggtac ctggctacgg agtgatccgt ttgtccaagt 3601 acgcgtctat gggttcagcg ctctgttttc ctattgaagc cttggtcttt acgaccttga 3661 tcttcgtggg aatacagaga tcgctcaacg ttacactgac tcgcaagcat attaagtcgc 3721 ttgcgaaatc ggtgcgtgtc tacggtgacg atttgatcgt tcccgtagaa tcagtgtcgt 3781 ctgtcgtaca cacgctcgag catttcggtg ctcgggttgg tgtggacaag tctttctgga 3841 ctggaaagtt cagagagtct tgtgggaagg aatactttaa tggccaggac gtaagtattg 3901 tccgggtcag gcaagcgtta ccttccacga cagctgacgt tgcaggagtc atctcaacgg 3961 tggcattccg gaaccaactt tacacaagtg gttactggaa taccgtccgt tggttggata 4021 atcaactcag gaagattcta agaatctatc ctgatgttga gccaacgtct cctgtattgg 4081 gcagggtctc attcctcggt tatcaagccg agagaatgca cccagaccat catagccccc 4141 aagttcgagg ctatgtagtg atggcaaaag cccccagcga tgaactgggg ggtactggtg 4201 ccctactcaa gtgtttactt aagttggaga gtggtgattt aaggggcacc tgggatagtc 4261 atatcccaga aataccctgt tatcacacca acatggacca cgacgcaagt cgtggccctt 4321 ccccgtgggc gccacccatg ggccaagatg agaagcactt ggaacgttca ggacgtcccc 4381 agcacgtcaa catcaaagct gggtggtggt caccccatta agggatgatc gggccagtaa 4441 atgcctgtgg gggagtcaag ggc //