LOCUS BK013845 3720 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gerhypos.3_12 genomic sequence. ACCESSION BK013845 VERSION BK013845.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gerhypos.3_12 ORGANISM ssRNA phage Gerhypos.3_12 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus chthonovicinum. REFERENCE 1 (bases 1 to 3720) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 3720) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT THIRD PARTY ANNOTATION DATABASE: This TPA record uses data from DDBJ/EMBL/GenBank entry MN035950 ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3720 /organism="ssRNA phage Gerhypos.3_12" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786285" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus Gerhypos.3_12" gene 79..1227 /gene="Gerhypos.3_12_1" CDS 79..1227 /gene="Gerhypos.3_12_1" /codon_start=1 /transl_except=(pos:79..81,aa:Met) /product="maturation protein" /protein_id="DAD51529.1" /translation="MYKQGSSISASGSYESRPSGFAAWEPGSWQLLNTYEMVTDNHVG WSSGKGDAGGPFLLIKKSVTVSPASVSDSRFRGSFYVSTPTGFIGINPFVQKTNVELD SMGSHAIAQVEPTNPSSHLLVSLGELKKDGIPSIGGHSLWKERTNLARGAGQEYLNSE FGWKPLVRDIKQFAKTVMDSHRIIEQYRKDSDRKIRRRYNYPFASSSQSDKAGSFVPI PAAVGAFGSGSIFVSCSSEQWFSGAFRYHIPIGVTTAEKLQRHYAYAQKLFGINPSPE NIWNLAPWSWSADWFSNTGDVLHNISALGHDGLVMEYGYMMSRTLRREVASATWYGGT SFQTSSSRDQTDEYLLRRDSTPYGFGTDLNSLTAAQTSVLVALGLSRS" gene 1321..1686 /gene="Gerhypos.3_12_2" CDS 1321..1686 /gene="Gerhypos.3_12_2" /codon_start=1 /product="coat protein" /protein_id="DAD51530.1" /translation="MAFSDPQSVTVNAVAQSMPRTSSGTDRGAFKKDDGTYVLSVSHN YGNKDTRRLIRLDNFKVAPDPLFPAQNTPYQAAVHLVVTEPPVGYTNAELKLIVDGFL AYLTASSGAMITKLLGGES" gene 1829..3706 /gene="Gerhypos.3_12_3" CDS 1829..3706 /gene="Gerhypos.3_12_3" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD51531.1" /translation="MKSLTLFWKELANELAGWCSTSTALDYNKLESRVEHEGMEFLTI TLPTFAKGLERALERGKMVPQDTPGFAWRSGLPLFLRGFLERVFDPGSGRLLDEPCID SIFAIRQLSMVFAKILVPCSDARREEAMRKFIQCELEVRSADKNMSEEDVSAFRRLST LVFGQCLSDVDKIIYDREVNLVDEDHWVFAGKVLPKHGPGSTAERLLGNRKFEQREWT DRLESVFPFSEYAIPNWRYMYLQDRVDFREPGRERPVRVVPVPKTLKTPRIIAIEPTC MQYMQQAVLAVLIRRIEQDNILSRLLGFTYQEPNRLMACEGSLSGDLATLDLSEASDR VSNQHVRLLLRNFRSLFEAVDATRSRKADVPGHGVIRLAKFASMGSALCFPFEAMTFL VIILVGIERELNRQMTHKDIMSLLGRVRVYGDDIIIPVEYVRCVISALEDFGLQVNRD KSFWTGKFRESCGGDFYDGVWVTPVRIRREFPSGRKQSRELISVVSLRNQLYSTGLWS TAAWLDDQIRPMLGGIFPIVESDSAALGRHSLLPPKGNGTVSDHHVLATRAWMPVPKL PSSPLGNEGALLKCLLSLEQSNGSEPAADSEHLVFAGRSDAVYIKLGWTPLQFGGAAT Y" ORIGIN 1 cgccccgtta ggggagtcac gcctcggtgt tagcgctatt tccatatagc gtccatatgt 61 gatgaacgga ggattgcggt gtacaagcaa ggctcttcca tttcggcttc aggctcttac 121 gagtcgagac cgagtggatt tgccgcttgg gaaccgggtt cctggcaact cctaaacacc 181 tacgagatgg tcactgacaa tcacgtagga tggagttccg ggaagggtga tgcaggcggt 241 ccgtttcttt taattaagaa atcggttacc gtctcacccg cgtcggtttc cgactctcgc 301 ttccgcggga gtttctacgt ttctacgcct actggtttca ttgggattaa tccctttgtc 361 cagaagacga acgtagagct tgattcgatg ggcagtcatg ccatcgctca agtggagccg 421 accaatccat cttcacatct ccttgttagt cttggagagt tgaagaaaga tggtataccc 481 tccattggcg gccattcact ctggaaagaa cgtactaatc tggcccgcgg tgcgggtcag 541 gagtacctca attcagaatt tggatggaag cctcttgtga gagacatcaa acagtttgca 601 aagactgtga tggactctca caggattatc gaacagtatc gaaaagattc tgatcgaaaa 661 atccggagaa ggtataacta tccgttcgcc tcaagctctc aatcggacaa ggctgggtca 721 tttgtaccca tccctgccgc ggttggagct ttcggttcag ggagcatctt cgtgtcctgc 781 tctagtgagc agtggttttc cggagctttc cggtaccaca tacccattgg agttacgaca 841 gcggagaaat tgcagaggca ttacgcctat gcccagaagt tgttcgggat taatcctagt 901 cccgagaaca tctggaatct tgctccctgg tcatggtccg ccgactggtt ctccaatacc 961 ggtgatgtat tacataacat ctccgcattg ggccacgacg gattggtgat ggagtacggg 1021 tacatgatgt cccgtacact tcgccgcgaa gttgcttcgg caacctggta tgggggaact 1081 agcttccaaa ctagttcttc ccgagaccag acagatgaat atctgcttcg tcgcgattcc 1141 acaccatatg gctttggcac cgatctgaac agccttacgg ctgctcagac atctgtccta 1201 gtagctttgg gattatcccg aagctagact agggcgcaac cgactatgta aagtacatag 1261 ccggccacct ccatgcgcta tcattccaga tagtgtatga acctgaaagg acagtgcctc 1321 atggcatttt ctgatccgca gagcgtgacc gttaacgcgg tggctcagtc gatgccccgg 1381 acttcgtctg ggacagaccg tggtgccttt aagaaggacg acggtacgta tgtccttagt 1441 gtttcccata actatgggaa caaggacaca cgtcgactga ttcgtctgga caacttcaaa 1501 gttgctccag acccgctttt cccagcccag aacaccccgt accaggcagc agttcacctg 1561 gttgttacgg agccccccgt tggttatacc aacgcggagc tgaagctgat cgtcgatggg 1621 tttcttgcct atctgacggc cagttccggt gctatgatca ccaagcttct tggtggtgag 1681 agctaggaaa ggtcggcccc tttacggggt ccccaactac gagcctcctg acggaggcac 1741 gcagccgcta gagaattgaa caccctctag tgggcgggga ggaaaatgcg tgaggctatg 1801 gattcgatta cccccattag gagggtcgat gaaaagcctt acgctgttct ggaaggagct 1861 agccaatgaa ttggctggct ggtgtagcac tagcaccgct ctcgactata ataagctcga 1921 gagtcgggtc gaacacgagg gaatggagtt cttaaccatt acccttccta ccttcgcaaa 1981 aggactcgag agagccctgg agcgaggtaa gatggttcca caggacactc caggctttgc 2041 ctggaggtct ggtctcccct tgtttctaag gggtttcctg gaacgcgtgt ttgaccccgg 2101 ttctggtcgg ttgttggatg aaccatgcat agattccatc tttgcaatac gccaactttc 2161 aatggtgttt gcaaagatcc tcgttccgtg cagcgatgcg cgtcgcgagg aggctatgcg 2221 gaagttcatc caatgtgaat tggaagtccg tagcgctgac aagaatatgt ctgaggaaga 2281 cgtgagtgcc ttccgaagac tgtcaacgct cgtattcgga cagtgccttt cggatgtaga 2341 taagattatc tacgatcgag aggtcaacct tgtcgacgaa gaccactggg ttttcgctgg 2401 caaggtactt ccgaaacacg gtccggggtc cactgctgag cggcttcttg gtaacaggaa 2461 gttcgaacag cgagagtgga ccgaccggtt ggagagcgta ttcccatttt cggaatacgc 2521 tatacctaac tggaggtaca tgtaccttca ggaccgtgtg gacttccgtg aacccggtag 2581 agaacgacct gtaagggttg ttcccgtacc taaaacgctg aaaacgccga ggatcatcgc 2641 tatcgagcca acctgcatgc aatatatgca gcaggctgtg ctcgcagtct tgatccgacg 2701 aatcgagcag gataatatcc tgtctcgatt gcttggcttt acataccaag agcctaatcg 2761 gctcatggca tgtgaagggt ccctctctgg ggacctcgcc actctcgatt tgagtgaggc 2821 gtccgatcgc gtttccaatc agcatgtacg gctccttctt cgtaattttc ggtctctttt 2881 tgaggccgtt gatgcgacga gaagccggaa ggctgatgta cctggccatg gagtaatccg 2941 tttggccaag ttcgcgtcga tgggttcagc tctttgcttt cccttcgagg ctatgacatt 3001 tcttgtcata atccttgtcg ggattgaacg agagctcaac cgacagatga cccacaaaga 3061 cattatgtct ttgttgggcc gggtgcgcgt ctacggagat gatataatca tccccgtgga 3121 atatgtgcgc tgcgtcatct ctgcacttga agattttggt cttcaagtaa acagggacaa 3181 gtctttctgg accgggaagt tcagagagtc ttgcggaggc gacttttacg acggtgtatg 3241 ggttacacct gtacgtatcc gtcgtgaatt tccctccgga cgcaagcaat cacgggagct 3301 gatttctgta gtttctcttc gaaaccagtt atattctact ggtctctgga gtactgcagc 3361 ctggctcgat gatcagattc gccccatgtt gggtggaatc tttccgatcg ttgagtcaga 3421 ttcagccgcg ctgggaagac attccttatt acccccaaag gggaacggga ctgtctcgga 3481 ccatcatgtt ctagctacta gagcatggat gcccgtaccc aagttgccat cttccccctt 3541 aggcaatgag ggagccctgc taaagtgttt gttgtcactc gaacagagta atggcagtga 3601 gccagctgct gacagcgaac atctcgtttt tgctggacgt tccgatgccg tctacatcaa 3661 gctcggatgg acgcccctcc aatttggagg ggcagcgact tattaaaagt cgtgtgggag //