LOCUS BK013556 4395 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gerhypos.3_16 genomic sequence. ACCESSION BK013556 VERSION BK013556.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gerhypos.3_16 ORGANISM ssRNA phage Gerhypos.3_16 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Hohrdovirus; Hohrdovirus solicola. REFERENCE 1 (bases 1 to 4395) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4395) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4395 MN032764.1 1-4395 FEATURES Location/Qualifiers source 1..4395 /organism="ssRNA phage Gerhypos.3_16" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786289" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Hohrdovirus; Hohrdovirus Gerhypos.3_16" gene 87..1811 /gene="Gerhypos.3_16_1" CDS 87..1811 /gene="Gerhypos.3_16_1" /codon_start=1 /product="maturation protein" /protein_id="DAD50548.1" /translation="MVTIYDPLPLHRFDTRGLPEGYDPHMLYEYRFQKLKDNPASALE WFLYKYIPNGLIKSFAFAIDPTGPFKVAPGVITNENRTKYRAVASVLQLRRVRYQRHV TAFASGVNYSGIGGCTAPYTIPTGFRDDYSQGLVNQVPLPDILRDTSSRTRLMGSKQG TLTMFKGFVNSPSRTVADLHSNNSEFYSTPGPFDSCIAAGGSSTYKDGGSDNRYSIID GAGATLSLNTYNSLREHEIAYNVGLSQANIISLLKGWSPFNRDYTLFRNLAELRDIPK SIASLTRSVQDLRSLYVSLAKSPSTRKIVFDLKAVAKDIPNEYLSYHFGWKQTYKDVV DLLNAPYKLSKRLNFLIARSGKPTTFRSKREFVSGESGVSGFDYEYLRDEYPPPSGAD YSSRISRESELRLVINATFDFPPISSVRFRNDLWIKRLGIEPRVTDVYNLVPWTWLVD YFTGLGNYVELIDNINHDPSLINWGVITCVSKGKLTTDFQSNSNRSYYHYVNNVKTED TFNRVANRHTSIYDYVCETRRDVATILDVKTTSEPSSLTTYQKSIIGALLAQRLDHSR KGTFRPTS" gene 1837..2205 /gene="Gerhypos.3_16_2" CDS 1837..2205 /gene="Gerhypos.3_16_2" /codon_start=1 /product="coat protein" /protein_id="DAD50549.1" /translation="MLADPVTVAAASPTPSLVLAVVKSDGYGSERVDTGGNGYSVITN HSKNKGGGSRHYVQMTQSVDAVDPYSGLTKKQVASVSITINRPGFGFTDASIIALAKA ITDYRDDGEVTTARLIQFQS" gene 2228..2482 /gene="Gerhypos.3_16_3" CDS 2228..2482 /gene="Gerhypos.3_16_3" /codon_start=1 /product="hypothetical protein" /protein_id="DAD50550.1" /translation="MSIRDDYEKDWKQATLYRLWYYILVLGLLTIYLAGCSADTDRSR DIDLAVKGSYTPGKATGTRNQVPQGGIDEKSGVTPAKSVD" gene 2442..4271 /gene="Gerhypos.3_16_4" CDS 2442..4271 /gene="Gerhypos.3_16_4" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD50551.1" /translation="MKSPVLLLQSLWTDIRRLCPEVKGLDRDLITIEKRFENEGYGFL TKALPALGDAFTQGIHTGRFVCPDGFKTVKGGAIPKFLSGMLYEVFEPLTGELRDTAD SGLIKCIREALYVFKKTQMPSEDELVLHKKAVAEFFRCDDTAGQVIIPDRHDHLIGIV SRLVLSGLSSVPLEEIQFKHGPGAVYEGLKANQKWSALSDAIKNEAFDVHTYGYGDFG VNLTELTERTIVTESKDASFCSFGGASSRTARLITVAKNSTSRRTITVEPMVNQFVQQ GLNIVLREYIARCPVLSNCLALTDQSKNQHLALEGSRTGKWATIDLKSASDLLSIKLV ESVFRHHGLFLDHMMNCRSTHIDSDIMSGQLLAKFAGMGNALTFPVQSTCFAIVCIAA ILDQWGLKPTQARVRRAARQIRVFGDDIIINSDYALQCVSWLESVGLKINRNKSFLEG NFRESCGVDAYKGVDVTPLYVRSRPDDQSTEPSAIGGLVATSNQAWMRGLYEFSAELA REVEERLGYALPLVGRECGALGWHSRLDAMTPTRWNYHIQAFETRTFVLKPLKRRDRL DGYAALLKFFHVPLLGRGRNHLEQSPIRYKLRIGLTWVPTYVG" ORIGIN 1 ctccgggcct cagccagtgc taggacagca ctgttgtgcg tagggattta cctacggctt 61 gcctttcaca tcagtaggag ccttcaatgg ttacgatata tgatcctttg cctcttcaca 121 ggtttgatac ccgtggattg ccagagggtt atgatcctca tatgttatat gagtatcgtt 181 tccagaaatt gaaggataat cctgcttcag ctctcgaatg gtttctctat aagtacatcc 241 caaatgggct tattaagtct ttcgcttttg cgatcgaccc aacgggtcca tttaaggttg 301 cacctggagt tatcactaat gagaatcgta caaaatatcg tgctgtcgct tctgttttgc 361 agttgcggcg tgtacgatat cagcgtcatg ttactgcctt tgcttctgga gtcaattact 421 ccggcattgg cggttgcacg gcgccctata cgattcccac agggtttcgg gatgattaca 481 gtcagggctt ggtgaaccaa gtcccgctgc ccgatatcct tcgagataca agttcgcgca 541 ccaggctgat gggctcgaaa caaggcacct tgactatgtt taagggcttt gttaacagtc 601 cgtcacgcac ggtcgctgac ttgcactcca acaattcaga gttttactcg acccctggtc 661 cgttcgattc ctgtatagct gctggaggtt ccagcactta caaggacggc ggttcggaca 721 ataggtactc tataattgat ggagctggag caacgctgtc tctcaacact tataacagcc 781 taagagaaca tgagattgca tacaatgttg gcctgtctca ggctaacata atctcattac 841 tgaaagggtg gagtcctttt aatagggact acactctatt caggaacttg gctgagctcc 901 gtgatatccc gaaaagcata gcgtcattaa cgcgaagcgt tcaggactta cggtcgctgt 961 atgtttccct tgctaagtca ccgtctacga gaaagattgt tttcgatctc aaggccgtgg 1021 cgaaggacat tccgaatgag tatttgtcat accatttcgg gtggaaacag acttataaag 1081 atgttgtcga cttgttgaat gccccctata agctttctaa aaggttaaac tttttgatcg 1141 ctcgtagtgg gaagccaaca acttttcgct cgaaacgtga gttcgtttct ggcgaatcgg 1201 gcgtctcggg atttgactac gaatatctca gagatgagta cccgccccct tctggggctg 1261 actactcatc tcgtatcagt agagaatcgg agctgcgttt agttataaac gctacctttg 1321 attttccgcc gatttcgagt gttcgtttcc gcaatgatct ttggatcaag cggttaggaa 1381 tcgaacctag ggtcacggac gtttataatc tcgtaccgtg gacctggctg gttgactact 1441 ttacgggcct tggcaattat gttgaattga tagacaacat aaaccatgat ccgtcgttga 1501 tcaactgggg tgtgattacc tgcgttagca agggtaagct cactacagat ttccagtcaa 1561 attcgaatcg cagctactac cattatgtaa ataacgttaa aacggaagac acctttaata 1621 gggtggccaa ccgtcatacg tctatttacg attacgtgtg cgaaacacgt agggatgtag 1681 ctaccattct tgatgtgaaa acaacttctg agccgtcgag tttaacgact tatcagaagt 1741 ctataatcgg tgcactgctt gcgcagcgtc tcgatcattc aaggaagggg acattccgtc 1801 ctacttccta gcttttattt cacaaggaga cgtcctatgt tagcagatcc agtcacagtt 1861 gccgccgctt cgcccacgcc ttcactcgtc ttggcagttg tcaagtcgga tgggtatggt 1921 tcggagcggg tcgacacggg aggtaatggc tactctgtca ttaccaacca ttcgaagaat 1981 aagggcggtg gctctcggca ctacgtccaa atgacgcagt ccgttgatgc tgtcgatcct 2041 tattccggac tgacgaagaa gcaggttgct tccgtcagca tcactatcaa tcggccaggt 2101 tttggtttca ccgacgcgtc tattattgcg ttggcgaaag ccattactga ctatcgagat 2161 gatggtgaag tgacaacggc gcggctgatt cagtttcaat cgtaattcat cttgaaggag 2221 agacgagatg tctatccggg atgattatga aaaagactgg aagcaagcca ctctatatcg 2281 gctttggtat tacatcctcg tgcttggtct tttgaccatt tacttggctg gatgctcggc 2341 cgatacggac aggtctcgcg atattgacct ggctgttaag gggtcatata ccccaggaaa 2401 agctaccggg actcggaatc aagtacctca aggaggaatt gatgaaaagt ccggtgttac 2461 tcctgcaaag tctgtggact gatatccgca gattatgtcc tgaagtgaaa ggcctcgatc 2521 gtgatctcat tacgatcgag aagaggttcg aaaacgaagg ctatggtttc ctaaccaaag 2581 ctttacctgc tttaggtgat gcctttactc aaggtattca cactggcagg ttcgtctgtc 2641 ccgatggctt taaaacagtc aaagggggag caatcccgaa atttctttca ggtatgctct 2701 acgaggtatt cgaaccgctc accggggagc ttagagacac ggccgactca ggccttataa 2761 agtgcataag agaggcactt tatgtcttta agaagactca gatgccttca gaggacgaat 2821 tagtcctcca taaaaaggct gttgctgagt ttttccgatg tgatgatacg gccggtcagg 2881 taattatacc cgatcgacac gatcatctca ttggcattgt gtcgagactg gttctatcgg 2941 gacttagttc tgtcccttta gaagagatcc agtttaaaca cggccctggt gccgtctatg 3001 agggcttgaa ggctaaccag aagtggtcgg ccttgtcgga tgctattaag aacgaagcat 3061 tcgacgtgca tacttatggc tatggtgact ttggtgtgaa cctcaccgaa cttacggaga 3121 ggaccattgt taccgagtcg aaggatgcat cattctgctc ttttggcgga gcttcgagtc 3181 gcactgctag actaatcacg gtggcgaaga attcgacatc gcgacgaaca attacagtag 3241 agcctatggt gaaccaattt gttcaacaag gtctaaatat cgtgcttcgg gaatatattg 3301 cccgctgccc ggtccttagt aattgtctag cacttaccga ccaaagtaag aatcaacacc 3361 ttgctttgga aggctcccgt accggtaaat gggcaaccat cgatttgaag tctgcatcag 3421 atcttctaag cataaagctt gtcgaatctg tattcagaca tcatggtctt ttcttggacc 3481 atatgatgaa ttgtcgatct acccacattg attcggatat catgtccggt caattactgg 3541 ctaagtttgc tggtatgggt aacgccttga cttttcctgt tcaaagtacc tgctttgcga 3601 ttgtctgcat tgcagcaata cttgatcagt ggggtcttaa acccacacag gcaagagtta 3661 ggcgcgcggc tcggcaaatc agagtttttg gtgatgatat catcatcaat tctgattatg 3721 ctcttcagtg tgtgtcctgg cttgagtctg ttggcctcaa aatcaacaga aacaagagct 3781 tcctcgaggg taacttccgg gaaagctgcg gggtcgatgc atataaggga gtcgacgtga 3841 ctcccctgta tgttagatcc cgtccagatg accagtcaac agagcctagt gccataggag 3901 gactagtggc gaccagcaac caagcatgga tgcgtggtct atacgagttc tccgccgaac 3961 tagcccgtga agttgaggag cgattaggat atgctcttcc tcttgtgggg cgagaatgcg 4021 gtgcactagg gtggcatagt cgtcttgacg cgatgactcc aactcgttgg aattatcaca 4081 tacaggcgtt cgaaactcga acgtttgtac tgaaaccgct gaaaaggcgg gatcggttag 4141 acggttatgc tgcactactc aagttttttc acgttcctct tcttggaaga gggcgtaatc 4201 atcttgagca gtctcctatt cggtataaac tccggatagg gttgacttgg gtgcctactt 4261 acgtaggtta aatcaggtct gaatgaaatc agcctgtcag agatggcaac tatctagaga 4321 ggcccccccc agaggggggg gcatgtacgc tccactttga ttgtggttcg ttcctccact 4381 agattgcttg gggtc //