LOCUS BK013397 4646 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gerhypos.3_4 genomic sequence. ACCESSION BK013397 VERSION BK013397.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gerhypos.3_4 ORGANISM ssRNA phage Gerhypos.3_4 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus geoadaptatum. REFERENCE 1 (bases 1 to 4646) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4646) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4646 MN034233.1 1-4646 FEATURES Location/Qualifiers source 1..4646 /organism="ssRNA phage Gerhypos.3_4" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786303" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus Gerhypos.3_4" gene 151..1431 /gene="Gerhypos.3_4_1" CDS 151..1431 /gene="Gerhypos.3_4_1" /codon_start=1 /transl_except=(pos:151..153,aa:Met) /product="maturation protein" /protein_id="DAD49979.1" /translation="MPYTKGVKRRDLPWEGWTGSLRTLRKEDPTFVGFSKGAFPGYMG VQITESENHPGWLRKDKTPLYRGDVGGNFLMRKQYVATPIQATLRNLSATFVDKLHTG YTVTATYIGGSIPTGIPPNPFAAFSPSSDAELEAWGTKAIAICKPTLNQTSLAVTMAE LFREGLPHLVGSVLWKDRTSRARGAGGEYLNVEFGFKPLANDIAKFAYGVVYFDRLRA QYERDSGKVVRRRFVFPPIETVTYRTVASDFVRPAHFPSSTQTDTVTTGSNTGAQTSL ETHTVIRRWFEGAFTYYAPPRGAFSGLSQARKILGLELTPENIWAVTPWSWAVDWFTN AGSVLKNYQAFAVDGLVMRRGYMMEHKVTTNTYYHVGPILNCWGDHDAPAPMSFVTET KKRVRATPYGFGLTMSGLTGRQQAVIAALGISRL" gene 1506..1877 /gene="Gerhypos.3_4_2" CDS 1506..1877 /gene="Gerhypos.3_4_2" /codon_start=1 /product="coat protein" /protein_id="DAD49980.1" /translation="MALTDPQSITINAVTTPLPRTFLEGSESSYVSNDGLWKLSLNHN LVKQGRVRHLLRFDHAKIAANPLVTAQNERATMAVYTVIEVPPPGWYSMTEQMQVYTG YKAMCAATSDAIITKLLGGES" gene 1840..2109 /gene="Gerhypos.3_4_3" CDS 1840..2109 /gene="Gerhypos.3_4_3" /codon_start=1 /product="hypothetical protein" /protein_id="DAD49981.1" /translation="MRSSPSYSVVSRSEGGTSYGRDEKVAPEKDPSYRLRLGRSRHRD DVEFNELDIKVKVSYKTLLLVFVLFDVFHKVVNALSDSTFVQSII" gene 2237..2518 /gene="Gerhypos.3_4_4" CDS 2237..2518 /gene="Gerhypos.3_4_4" /codon_start=1 /product="hypothetical protein" /protein_id="DAD49982.1" /translation="MPRQSLGELYPRELEHAFQLCRIAEASKHDRNGDNSSSRYFVDC KVHEPIGSDNQIRIKDFDDDAVISVAELEDRMGEDLLSRFFYKRSVRSA" gene 2609..4489 /gene="Gerhypos.3_4_5" CDS 2609..4489 /gene="Gerhypos.3_4_5" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD49983.1" /translation="MAEESAIQCCTSTRRDINTVAVRVEHEGLSFLTITLPDLGKAIQ KWLDQGRVTSHPAFSNERGGSLPRFLGGFFSRVFDRRSGLLLDDPCTDSIHALRQLTL MFGKMELKCSPARELKAVTNYIECEQEVRLFDNKLTKSDLSEFVRMSDMLYGRIFAQV DRDVYLGRNVPRHGPGSTADGLKGNQKFMQVVWTERLENAGLAAGENLLPNWRFYDQL GGVDFLEPGAEVPVKVTLVPKTLKTPRVIAMEPTCMQYMQQAVLHRLLAYLGKDDFLA RVIGFDDQVPNQELARRGSIDNRTATLDLSDASDRVSNQLVRSMLHRWPHLFGAVDAT RSRRAELPSGEVIRLAKFASMGSALCFPIEAMVFTTLIFMGIQRSLNTPLSRKDLKRY AASVRVFGDDLIVPRDHVLSVVNLLEHFGARVGADKSFWTGKFRESCGREYFNGRDVS IVRVRQEFPTQRKDVEEVISLVAFRNQLYMSGYWMTVKWLDGILGKLLTHFPTIQPSS SLLGRVSFLAEDTNMFSDERLHPSLHTPIVKGYVVKAKPPRDPLEGTGALLKCLMKLA REGSLRDLIPCSYPNISIDGLAAVERAPAEVKVPSVHTKHLERFGRPRSISMKLGWRS PL" ORIGIN 1 cccccgaaag ggggcccggc gcagtgcaac atatccgcta tccttaggct aggaggcctt 61 gtcaacctcc gtactctccc tttccggggg agaagccttg ttggatagtg attgagggga 121 gttaacccct cgggaccgta aggagctctg gtgccatata ccaaaggtgt gaagcgccgg 181 gatctaccct gggaagggtg gaccggtagc ctcaggacgc tccgaaaaga agatcccact 241 tttgtggggt tttccaaagg ggcgtttcct gggtatatgg gggttcagat tactgaatcc 301 gagaaccacc ctggttggtt gaggaaagat aaaactcctc tctaccgggg tgacgtaggt 361 ggtaactttc tcatgcgtaa gcagtacgta gcgacgccca tccaggcgac gttgcgtaat 421 ttgtctgcta cgtttgtaga taagctccac accggctata cagtaacggc aacctatatt 481 ggggggtcaa tccctacggg gattcctcct aatccgttcg ccgcgttctc gcccagcagt 541 gatgctgagc ttgaagcgtg gggaacgaag gctatcgcta tctgtaagcc aacgctcaat 601 caaacgagct tggctgtgac tatggctgaa ctcttccgag agggcctacc ccatcttgtg 661 gggtcggttc tctggaaaga tagaacctcc cgtgcacgtg gtgccggggg ggaatatctc 721 aatgtggagt tcggctttaa gccactagcg aacgacatcg ctaaatttgc atacggtgtc 781 gtttactttg accggcttcg cgctcagtat gaacgcgatt ctggcaaagt cgtacgtcgt 841 aggttcgttt ttccaccaat cgagacggtc acttaccgta cggtcgcttc ggactttgtg 901 cgtcctgcac actttccgag ttcgactcaa acggatacag ttacgaccgg ctcgaacacg 961 ggagctcaaa cctctttgga gactcataca gtcatccgga gatggtttga gggagcgttc 1021 acttattatg caccccctcg gggggcattt agtgggctct cccaggcaag gaaaatcctt 1081 ggtctggaac tgaccccaga gaatatctgg gcagttaccc cgtggagctg ggctgtcgac 1141 tggttcacga acgctggtag tgtccttaag aactatcaag cgttcgcagt cgatggtctg 1201 gtgatgcgtc gtgggtatat gatggaacat aaagttacca ccaataccta ctaccacgtc 1261 gggcctatcc tcaattgttg gggagaccac gacgcgccgg ctcctatgtc tttcgtcact 1321 gagacgaaga aaagggtccg ggcaaccccc tatggttttg gtctgaccat gtctggcctg 1381 acaggcagac aacaggccgt tatagctgcg ctcgggatat cccgtctgta gctaatagac 1441 gtgttgtacc tgcgtctttc gacgccgaat aggggctgta gaccacagcc ctaggagtga 1501 tgcctatggc actaaccgac ccgcaatcca tcacgatcaa tgcggtgact acgccacttc 1561 cgagaacttt cttggaggga agcgagtcat cgtatgtgag caatgacgga ttgtggaagc 1621 tgtcgcttaa ccataacctg gtaaaacagg gtagggtgcg gcaccttctg cggtttgacc 1681 atgcgaagat cgctgccaat ccgttggtga ccgcccagaa cgagcgggct acgatggccg 1741 tttacacggt tatcgaagtc cctccgcctg ggtggtactc aatgactgag cagatgcagg 1801 tgtacactgg ctataaggcc atgtgcgctg caacttcgga tgcgatcatc accaagctac 1861 tcggtggtga gtcgtagcga gggcggtact tcctacgggc gtgacgagaa ggtggctcct 1921 gagaaggatc catcctatcg tttacgccta gggaggtccc gtcaccgtga cgacgtggaa 1981 ttcaacgagc tcgacatcaa ggtcaaggtg agctataaaa cgctcctctt ggtctttgtc 2041 ttgttcgatg tttttcacaa agtcgtcaac gcgctgtctg actctacctt cgttcaatct 2101 attatatagt tgaacgggag tttgagttag ctgtgcgagg caacgcctcg tgagaggcgt 2161 tctccatggg tacggtaaac tccggcctat aacaacgatc tggggtgctt tcctcagaga 2221 aaggtagcag cataatatgc cacgccaatc cctgggggag ctttaccccc gggagctgga 2281 gcacgcattc cagttgtgcc gaatcgcgga agcgagtaag cacgacagga acggcgacaa 2341 cagctctagc cgctacttcg ttgactgcaa agtccacgag cctattggtt cggacaacca 2401 aatccgaatc aaggacttcg acgacgatgc cgtcatttcg gtagcggagc tcgaagaccg 2461 gatgggcgag gacctcttgt cgaggttctt ttacaagcgt tccgtaagga gcgcttagcc 2521 caccgtagtt gagtaacgta ggctaaggat ccgcacaccc tctgcgaaag ggggaacggt 2581 gaaaagccta atgtcactct ggtcccggat ggcggaggaa tccgccatcc aatgctgcac 2641 tagcacccgc cgcgacatta ataccgtcgc ggtgcgtgtc gaacatgagg ggttgtcgtt 2701 tttaacgata accctaccgg accttggaaa ggccatccaa aaatggctcg accagggtcg 2761 ggtgactagc caccccgcgt tcagcaatga acgtggggga agtctccccc gatttctcgg 2821 aggtttcttc agtcgtgtgt tcgacaggag aagtggcttg ttgctcgatg atccgtgtac 2881 ggattctatc catgccttgc gtcagctaac gctgatgttt ggcaagatgg agctcaagtg 2941 ctccccagca cgtgagttaa aagccgtcac gaattatatc gagtgtgagc aggaagtccg 3001 tttgttcgac aataaactca caaagagcga tctgagtgag tttgttcgca tgtcggacat 3061 gctctatgga cgtattttcg cgcaggtaga tagagatgtc taccttgggc gtaacgtacc 3121 acggcacggt ccaggatcga ccgccgatgg acttaagggt aaccaaaagt tcatgcaggt 3181 ggtctggacc gaacgtctcg aaaatgccgg cctcgcggct ggcgagaatc tcctcccgaa 3241 ctggcgcttt tatgaccagt tgggcggagt tgacttcctc gaacctggcg cggaggtacc 3301 tgtaaaggtt accctcgtac ctaagacgct gaagactccg cgagtcattg ccatggagcc 3361 gacctgtatg caatatatgc agcaggcagt gctccatcga ttgctcgcgt acctcggtaa 3421 ggatgacttc cttgcgaggg ttatcggatt tgatgaccaa gttcctaatc aggagcttgc 3481 tcgacgtggt tcgattgata atcgaactgc gacactcgat ttgagtgacg cttccgatag 3541 agtttctaat cagctcgtcc gatctatgtt gcatcggtgg cctcatttgt ttggggctgt 3601 cgacgcgact cggtctagac gggctgaact tccgtcgggc gaagtaattc gcttggcgaa 3661 gttcgcgtct atgggttcag cactttgctt ccctattgaa gcgatggttt ttacaacatt 3721 gatcttcatg gggattcaaa gatcgctcaa cacgccgctt agtcgcaaag acctgaaaag 3781 gtatgcggcc tcggtgcgtg tctttgggga tgatctaatt gttcccagag accatgtgct 3841 ctccgttgtc aacttgctcg agcatttcgg tgcgcgagta ggggccgaca agagtttctg 3901 gactggtaag ttcagagaat cttgtggtcg ggagtacttt aatgggcgcg atgttagcat 3961 tgttcgcgtc cggcaagaat ttccgacaca acggaaagac gttgaagagg ttatttcact 4021 tgtcgccttc cggaaccaac tctatatgag tggttactgg atgacggtga aatggttgga 4081 tggaatcctg gggaagttgc taacgcactt tcccactatc cagccaagtt cctctttgct 4141 gggcagggtg agttttctcg cagaggatac taatatgttc tctgacgagc gactgcaccc 4201 aagccttcat acccccattg tcaaggggta tgtagtgaag gccaaacctc caagagatcc 4261 tcttgagggg actggtgccc ttctcaagtg tctaatgaag ttggctcgtg agggtagttt 4321 aagggatttg attccctgct cttaccccaa catctcgatc gatggccttg cggctgtcga 4381 gagagctccg gcggaggtga aagtcccgtc ggttcatact aagcacttgg aacgttttgg 4441 tcgtcccagg tcgatcagca tgaaacttgg gtggagatca cccctttagg gagtggtcgg 4501 ggccaggtca ttaagaccag ccctgaggga gagtcctaag ctcctaccta gccggttaat 4561 acccggtcgg taggttctgg ctggacagat acccctgtta ggggatctaa ccagttggac 4621 tttgtggata ccgtgaggtt ccacgg //