LOCUS BK013461 4335 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gerhypos.3_6 genomic sequence. ACCESSION BK013461 VERSION BK013461.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gerhypos.3_6 ORGANISM ssRNA phage Gerhypos.3_6 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus geoenecus. REFERENCE 1 (bases 1 to 4335) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4335) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4335 MN035694.1 1-4335 FEATURES Location/Qualifiers source 1..4335 /organism="ssRNA phage Gerhypos.3_6" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786305" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus Gerhypos.3_6" gene 136..1446 /gene="Gerhypos.3_6_1" CDS 136..1446 /gene="Gerhypos.3_6_1" /codon_start=1 /product="maturation protein" /protein_id="DAD50208.1" /translation="MTSKSRLIPYSGAVFGRMESKTSNDLSPNVSRSVFINDWAANIA FLNGYQFTDSQSHPEWREHIRGRFTKDIGGPFTSRKRFAFSDIAEAIPLYGVQGSGAN HTNVTEVSYLGPLFPIAPIPSLVGFPTFVGSTDSKLNQLGTDAIARCSPVNPTADAVT SLGEIVSDGLPKAVGGTLGNWRNLSNRSRRRAIGEEYLNVEFGWKPFVNDLKDLCKGV IEGNSIMEQLERNSGHLVRRRYDFPISVDENTTPLGGLRSVTYSPSSNVLSDIVNLNK GQVYRREITAKHQWFSGAFTYYIPPRDGSRRTEMARAVLKARSTIGVSLTPDTVWNLQ PWSWLIDWFSNADSVLRNWSNWALYNQVLWYGYIMEHTVHQYQYIFTGPTGIKGLGSC PSLSTVAETKVRRAATPYGFGFSWSGLSTLQKSILAALGIARSK" gene 1511..1873 /gene="Gerhypos.3_6_2" CDS 1511..1873 /gene="Gerhypos.3_6_2" /codon_start=1 /product="coat protein" /protein_id="DAD50209.1" /translation="MSFADPQSVTIATVTTSLPRTSVEGDRSVYSSADGLIQLSADHQ VSKRIRRVVRLDLAKVTSDPFKPVENVKVNMAVYTVFDLPPAGYTNADALAVWVGYRT LLAASSDTVITKLLAGEN" gene 1908..2126 /gene="Gerhypos.3_6_3" CDS 1908..2126 /gene="Gerhypos.3_6_3" /codon_start=1 /product="hypothetical protein" /protein_id="DAD50210.1" /translation="MSPVGNGRHELPDRRDSSDGPSARAFPSIGRRKTDHDPRTTITK KLLVVVVALVNAVYLVAEIFLRATDVCP" gene 2113..2328 /gene="Gerhypos.3_6_4" CDS 2113..2328 /gene="Gerhypos.3_6_4" /codon_start=1 /product="hypothetical protein" /protein_id="DAD50211.1" /translation="MCALRRFANNTQVVTRQDFASNGEPTTVYITIYLQPKRLRTDEV EVRLQNVHEALKELRNATDSDPLHFTW" gene 2352..4334 /gene="Gerhypos.3_6_5" CDS 2352..4334 /gene="Gerhypos.3_6_5" /codon_start=1 /transl_except=(pos:2352..2354,aa:Met) /product="RNA-directed RNA polymerase" /protein_id="DAD50212.1" /translation="MFTTYKGGTLKSLTSLWSCAANELAARCCTSATRDIKTVASRFE HEGLSFLAITLADLGKATEKWLDQGFVVPSDAPAFRPRRLTSLPAFLSGFYGRVFDPC SGVLLDSPDIEAVYALRQLTLMFSKIALPQDDPSGPSTRVVNPRRERLAMNGYVQCEQ DVRRSDELLDEAYMADFKRVSALLFGKLFEKVDRDVYWTRLHPKHGPGAVADRLTSNG KYNLRTWTARLQRLMPAESFLIPNSSFIGELDDELNVLEPGAEMPVRVITVPKTLKSP RIIAIEPACMQYVQQSILACILSAVKEDSFLSRVIGFDDQEPNRLMARRGSLSGDLAT LDLSEASDRVSYQHVRAMLEDYPHLLGAVDSCRSRKADVPGHGVIRLAKYASMGSALC FPFEAMVFLTVIALGIERELSTPLSRNAFIKRFSERVRVFGDDLIVPRDYVLSVVLEL QAFGHVVNESKSFWTGRFRESCGREYYDGQDVSIVKVRSVLPTQRQDANGVISAVALR NQAYWAGLWKTAAWLDVYLGKMLKHYPNVAPTSPLLGRESALGYQFQRLHPEYHSPLT KGYYVVAKAPSDPLDGPGALLKCLLRHPVAGFGLRPSPAATSGSDIVAANYDEEHLER SGRPEHVSIKLGWRSPFYEGAAGLARRGTIEVSQPP" ORIGIN 1 cccgtgaggg gccctgggcg ctacagtgca tggttatggg acgataacgt ccgctgtttg 61 agcggattag ttgtcccatg ttccggtgaa ttaacaccgg agagaccaga tgacttatcg 121 gtcaggaagg agtttatgac atctaagtca cggttgatac cgtactctgg tgccgtgttc 181 ggtcgtatgg agagtaaaac ctccaacgac ttgagcccga atgttagtcg ttcagtcttc 241 attaacgact gggcggcaaa cattgccttc ctgaatgggt atcagtttac tgattcccag 301 agtcatcctg agtggcgcga acacattcgt ggacgcttca ctaaggatat cggtggcccc 361 ttcacttcgc ggaaacggtt tgcctttagc gatatagctg aggcgatccc gctctacggg 421 gttcaagggt ctggtgctaa tcatacgaac gtgaccgagg tttcatacct tgggccattg 481 ttcccgattg cacctattcc gagtttggtt ggatttccga cttttgtcgg ttccaccgat 541 tctaagctta atcagcttgg aacggatgcc attgctcggt gttcaccggt aaatccaacg 601 gcggacgcag ttacttctct cggtgagata gtctccgatg gccttccaaa ggccgttgga 661 ggtacgctag gaaactggcg taacctttcc aatcgttcgc gaaggcgagc gataggcgag 721 gaatatctta acgttgagtt tggctggaag ccttttgtga atgatctaaa agatctttgc 781 aaaggagtca tcgagggcaa ttccattatg gaacagcttg agagaaactc cgggcatctt 841 gtccgtcgca ggtatgactt cccgatttca gttgacgaga acaccactcc tttgggtggt 901 ctgcggagcg tgacctactc tccgagtagt aacgttttgt cagatatcgt taatctgaac 961 aaggggcagg tttatcgcag agaaattact gcgaaacatc agtggttttc cggtgctttc 1021 acgtactata taccgccacg cgacggaagt cgcagaacgg aaatggcgcg tgccgtgcta 1081 aaagcgcgga gcactattgg agtatcactg acaccagaca ccgtctggaa cctgcagccc 1141 tggagctggt tgatcgattg gttcagtaac gccgactccg ttttgcggaa ttggtcgaac 1201 tgggccctct acaaccaggt gttgtggtac gggtacatta tggagcacac tgtgcaccag 1261 taccagtaca tattcacggg cccgaccggt attaagggtc tgggttcgtg tccctcgctt 1321 tccacggtcg ctgagaccaa ggttagacga gcggcaacac catacggttt cggattctcc 1381 tggagtggtc tttcgaccct tcagaagtcc attctcgcag ctctcggcat agcccgatct 1441 aagtgagaga ccgtgtacta cgcgtttaaa cgtcaatggg ggcctaccaa ggcccctagg 1501 agtgatgctc atgtcgttcg ctgatcctca atccgttacg atcgctacgg tcactacgtc 1561 gctcccgcgc acaagcgtgg agggcgatag gagtgtctat agctccgctg acggtttgat 1621 ccagctgtcc gccgaccatc aggtctcaaa gcggattcgc cgggttgtga ggctcgacct 1681 cgcgaaggtg acgtcagatc cgttcaagcc agtggaaaac gtgaaggtca atatggccgt 1741 ttacacggtc ttcgaccttc cgcccgctgg ctacacgaac gctgacgctc tcgccgtttg 1801 ggtgggttac agaaccctcc tcgcggcatc ttcggacacg gtgatcacca agctgttggc 1861 tggcgagaac taatcatcct cgctatgcct tatggcaagg gattcctatg tcaccagtag 1921 gcaatggtcg tcacgagctc cccgatagga gagactcgag cgacggtccg tcggcccgtg 1981 cttttccaag cataggccgt cgtaagacgg accatgaccc gcgtactact atcaccaaga 2041 aacttctagt ggtggtggtc gctttggtca acgctgtcta tctggtcgcg gaaatcttct 2101 tgagggccac tgatgtgtgc ccttaggaga tttgcgaaca atacccaagt agtgacccgt 2161 caagactttg ccagcaatgg cgagccaaca acggtttaca tcaccatcta tctgcagccc 2221 aaaaggctta ggacggatga agtggaagtc cggctccaaa acgttcacga ggccctaaaa 2281 gagcttcgaa acgcaacaga ttcggatcct ctccacttta cttggtgagt ctagacgaca 2341 gagctaggga tgtgtttacc acctataaag gagggacact gaaaagcctg acgtcactct 2401 ggtcatgcgc ggccaatgaa cttgccgcgc gatgctgcac tagcgccact cgcgatataa 2461 aaactgtcgc gagtcggttc gaacacgagg ggttgtcgtt tttggcgatt accctggcgg 2521 acctaggaaa agctaccgaa aagtggcttg accaaggttt cgtcgtcccg tcggacgctc 2581 cagcctttcg gcctcggcgt cttacaagtc tcccggcatt tctgtcaggt ttctatggac 2641 gtgtgttcga tccttgtagt ggcgtgcttc tggactctcc tgacatcgaa gcagtctatg 2701 ctttgcgtca gcttacgctg atgttcagca agatagctct ccctcaagat gacccttccg 2761 ggccgtctac gcgggttgta aatccgcggc gtgagagact agcgatgaat ggttacgtcc 2821 agtgtgaaca ggacgttcgg agaagcgatg aactcctaga tgaggcctat atggccgact 2881 tcaaaagagt ttccgctttg cttttcggga agttgttcga gaaagtggac agagatgtct 2941 actggactcg gcttcatccc aagcacggac caggcgctgt cgcagatcgt ctcaccagta 3001 atggtaagta caacctgcga acctggaccg ctcgacttca acggcttatg ccggcggagt 3061 cattcttgat tcctaattcc tcctttatag gggagttgga tgatgaattg aacgtccttg 3121 aacccggcgc ggagatgccc gtgagggtca tcaccgttcc taaaacgctc aagtccccac 3181 ggattatcgc aattgaaccg gcctgcatgc agtatgtgca gcagtcgatt ctagcgtgta 3241 tcctttctgc ggtgaaagag gatagtttcc tctcccgcgt tatcggattt gatgaccagg 3301 agccgaatag gctaatggcc agaagaggtt cgctcagcgg cgacctcgct acgctcgatt 3361 tgagcgaagc atccgatagg gtctcgtatc agcatgtacg ggcaatgctt gaggactacc 3421 cccatctgct aggggcggtc gattcttgca gatcccgaaa ggctgatgta cctggtcacg 3481 gagtgatccg tttggccaag tatgcgtcta tgggttcagc tctttgcttt ccgtttgagg 3541 ccatggtctt cttgaccgtg attgccttgg gcatcgagcg agagctaagc accccacttt 3601 ctcggaatgc gtttattaag cgcttttccg agcgggtgcg tgtctttggg gacgacttga 3661 ttgtcccccg agactatgtg ctgtccgttg ttctcgaact gcaggctttc ggccatgtgg 3721 ttaacgagag caagtcattc tggaccggaa ggttcaggga gtcttgcgga cgggagtact 3781 atgacggcca agacgttagt attgtcaagg ttcgatcggt tctcccgaca caacggcagg 3841 atgcgaatgg agtaatatcc gctgttgcgc tccgaaacca agcctattgg gctggtcttt 3901 ggaaaacggc agcgtggttg gatgtctacc tagggaaaat gctaaagcac tacccaaacg 3961 tagctccgac ctctccattg ttgggcaggg aatcggcgct tggttatcaa ttccaacgcc 4021 ttcatcccga ataccacagc cccctaacta agggctatta cgtggttgcc aaggctccgt 4081 ccgatccatt ggacgggcca ggcgcccttc ttaagtgcct attgcggcac ccagttgcgg 4141 gattcggtct tcgaccgagt ccggctgcga catcgggttc cgacatcgtg gctgcgaact 4201 acgatgaaga gcacttggag cgttctggac gccccgagca cgtcagcatc aagctcgggt 4261 ggaggtctcc cttttatgag ggagccgcgg gcttagcccg tcgggggact atcgaagtct 4321 cccagcctcc gtaat //