LOCUS BK013419 4205 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gerhypos.4_11 genomic sequence. ACCESSION BK013419 VERSION BK013419.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gerhypos.4_11 ORGANISM ssRNA phage Gerhypos.4_11 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Pohlodivirus; Pohlodivirus arvihabitans. REFERENCE 1 (bases 1 to 4205) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4205) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4205 MN032687.1 1-4205 FEATURES Location/Qualifiers source 1..4205 /organism="ssRNA phage Gerhypos.4_11" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786311" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Pohlodivirus; Pohlodivirus Gerhypos.4_11" gene 67..1737 /gene="Gerhypos.4_11_1" CDS 67..1737 /gene="Gerhypos.4_11_1" /codon_start=1 /transl_except=(pos:67..69,aa:Met) /product="maturation protein" /protein_id="DAD50059.1" /translation="MSIRKKRTSIKLFGDPQDTRGLPASVDPRHFYEYRIERLSQSAS GLESFLYRLIPYDYIRSFAIAIDPLWKFKISPARIQPANRTLSRVTKSMSTVIQTTTR GLSETSSSLMFNGCPTGKETVSRSPTDTTSSVRVDSVDRSLQGLDTTFRTRPTGFEFG ECNFTSINAFCPDRTVEVSSKTAVLLTKPTCSIGTQYSRNNSFTRITVSPGAYYPWSR HQALRLQESNFAGSLLTSRGLALVQRAMPTSRHQSLLRNVIELRDIPRSILSLRDSLV YFRSLYSSIPSDKLRNQIFHLGLRKTELRSVLPNEYLSYQFGWKQLFGDIMNALNQPA KVAKRINYLMRHAGRDAPYSTVMKYSELLPTSSPRFVWPSTTKDSSPIVEDVHGTREI TLRASLHADFRFPDVDRPLFKQALFSQMLGEDLSPPDIYDLVPWTWLTDWYTGLGNYL HAVYEINNDRSLINFGFVSAKVKSTLIHDHQWSEFLTDSKTVDGIQNNYPTSYYRKAS CSATAIATTYIRRDASQVLNISSPADTGQLSTWKQTILGALFAQRIPR" gene 1782..2162 /gene="Gerhypos.4_11_2" CDS 1782..2162 /gene="Gerhypos.4_11_2" /codon_start=1 /product="coat protein" /protein_id="DAD50060.1" /translation="MERSLALPDPVTVAAAAPNPEIKLGVTAFPGFGSKRIDLNNGGY QSVINHTTLKSGVKHYVQLLLTKDATDPYGAVTKQVVASVSLTINRPAFGFTDTEMIN LVKAHTDLIADSEVTVAKLLLNQS" gene 2344..4140 /gene="Gerhypos.4_11_3" CDS 2344..4140 /gene="Gerhypos.4_11_3" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD50061.1" /translation="MKSPTLLLLALLTDVREQGYDNTKGTDRDYLTICRRAEHEGDSF LAVTLPILDKALLQGLEHRRFECPSNFRRKGALPLFLRGLLSKVFDEKSGILLENPCK GCIELVHLICMSFKKLQLSPKNEQQLVKKAEKEYSMIEKSVIDLSDVPERELHHFDAV CSIVLSRLDDFESTDIQCKHGPGSVYEKLTPNEKWRYTYLSSQVDERLDELGFNEVFD PYDIEFEPVVDIRGSKASVISVPKNSTAVRLITVEPFLNQFIQGGLKKYLWSYIQKCP LRHCLALDRQDLNQKLALDGSKTGDYCTIDLKSASDLLSDELVHFVFRKNEKFQKLLI SSRTSFAKFGTAEFLLKKFAGAGNATTFPIQSYVYAMICISAILDREGRKPTLKNVEA SASRLRIYGDDIICRTEDAVVVMNWLTTFGLRVNSGKSFLKGNFRESCGVDAYDGVDI TPVYVRHYPSDDTSLSPKALTSLVSCSNLYFKRALYNAADFLKNLVEDYLGPLPLVSE DSPVLGWHTRQNAYTFSKWCTEYQRFKTRGYFIKAKKRLDTLSGYPALLKFFHSPCEG PLGSLQDLRPDDHLSKTDWRYKTSISKKWCHV" ORIGIN 1 ggactctagg ctagctttcg ctagctccca ttacgggcca aaccttgtgt gttgtcggag 61 gtttctgtgt ctattcggaa gaagagaact tcgatcaaac tgtttggtga tccacaagat 121 actcgtggac tgccagccag cgttgatcct cgtcactttt acgagtaccg aatagagcgt 181 ttgtcacaga gtgcgtccgg tctagagtct ttcttgtatc ggctgatccc ttacgactac 241 attaggtctt tcgctatcgc gattgatcct ttgtggaagt ttaaaatcag ccctgcaaga 301 atacaacccg ccaataggac tctttcccga gttaccaaat cgatgtctac ggttatacaa 361 accacgacac gaggtctctc agaaacgagc tcatccttga tgttcaatgg atgccctact 421 ggaaaagaaa cggtctccag atctcctact gatactactt cttcagtaag agttgattct 481 gttgatcgtt cacttcaggg tctagacacg acatttcgta ctcgtcctac aggctttgag 541 tttggtgaat gtaactttac atccatcaac gctttctgtc ctgataggac tgtcgaagtg 601 tcgagtaaga cagctgtgct tctcacaaaa ccgacttgtt ccataggtac tcagtactct 661 aggaacaact cgtttacgag aatcactgtg tctcccggtg catactatcc gtggtctcgc 721 catcaagcat tacgattaca ggagtcgaac tttgcaggaa gcttacttac ttctcgcgga 781 ctcgctctcg tacagagagc tatgcctact tctcggcatc agtctctgct tcgtaatgtt 841 attgagctgc gtgatatacc taggtctatc ctttctctta gggatagtct ggtgtacttt 901 cgcagcctct atagctctat tccgtctgat aagctacgga atcagatctt tcatctcggt 961 cttcgaaaga ccgagttaag atctgtccta ccgaacgagt acttgtcgta ccaattcggg 1021 tggaagcagc tatttggcga catcatgaat gcgcttaacc aacctgcaaa ggtcgctaag 1081 aggattaact acctcatgcg acatgctggt cgggatgcgc cgtattcaac agtaatgaag 1141 tattcagaac tgttgcctac gagttctccg cgattcgtct ggccgtcgac tactaaggac 1201 tcatcaccca tagtagaaga cgtacacggt actcgtgaaa tcacgctaag agcttcgctc 1261 catgctgact tcaggtttcc cgatgtagat cggccgctct ttaagcaggc acttttctca 1321 cagatgttgg gcgaggatct ctcccctcct gacatttatg atttagtgcc ctggacttgg 1381 ttgacagatt ggtatactgg tcttggtaat tacttacacg ctgtgtacga aattaacaat 1441 gaccggtccc taatcaactt tggctttgta tctgccaaag taaaatcgac cttgatccac 1501 gatcaccagt ggtcagagtt cttgactgat agtaaaaccg tcgatggtat ccagaataac 1561 tatccaacct catactatag gaaggctagt tgttctgcga cagctatcgc gactacctac 1621 atccgtaggg acgccagtca agttctcaac ataagtagtc cggctgatac aggtcaactt 1681 tcaacctgga aacagacgat cctaggtgct ttgtttgcac agaggatacc acgctaaact 1741 agtcagcatg acagaacgtt atgttgatac tcttaaacct catggagcgt tccttggccc 1801 taccagatcc tgttaccgtt gccgctgctg ccccaaaccc cgagattaaa ctcggtgtta 1861 cggcatttcc cggcttcggc tcgaagcgaa ttgatctcaa caatggtggt taccagagtg 1921 tgatcaatca taccaccctt aagtctgggg tgaaacacta cgtgcaactc cttctcacga 1981 aggacgctac ggacccttac ggggccgtga cgaagcaagt agtcgcttcg gtctcactga 2041 cgatcaatcg tccggctttc ggttttaccg ataccgagat gattaatctc gttaaggcac 2101 atacagacct tatcgctgac agtgaggtga ctgtggccaa gctcctgctg aatcagtcgt 2161 gaaaacgagt gactctgctc aggggcttat tcatcttctg ttgcggtgca tttctttcgg 2221 cgtgcgcctc ttcaaaagac gaaggggagc ccagaatggg ccccccgcta caactgggtc 2281 aggtgactga cccgtctggt agtaatcaag ggactaggaa tcgaccacct tacggaggaa 2341 tcgatgaaaa gtcctaccct gctcctcctt gctctactga ctgatgtcag agagcaggga 2401 tatgacaaca caaaaggtac ggatcgtgat tacctcacga tctgcagacg cgccgaacac 2461 gaaggtgaca gtttcctagc tgtcactctt ccgatcttag acaaggccct tttacagggt 2521 cttgaacata gacgtttcga atgtccttcc aactttcgtc ggaagggtgc tctcccttta 2581 tttctgcggg gtttgctttc gaaggtgttc gatgaaaaat ctgggatcct tcttgagaat 2641 ccatgcaagg ggtgcattga acttgtgcat cttatctgca tgtctttcaa gaaactccag 2701 ctcagcccca aaaacgagca acagctcgtc aaaaaggccg aaaaggagta cagcatgatc 2761 gagaaatcgg ttatcgatct aagtgatgtc cccgagaggg aacttcacca tttcgatgct 2821 gtttgctcca ttgttttgtc tcgactcgat gactttgagt caaccgacat acaatgtaag 2881 catggcccag ggtctgtcta cgagaagtta actccaaatg agaaatggag atatacttac 2941 ctttcgtctc aagtcgacga gaggctggac gaactcggct tcaatgaggt cttcgacccc 3001 tatgatattg agtttgaacc agtcgtagat attagaggct caaaagctag tgttataagc 3061 gtaccgaaga actctactgc ggtgcgccta attacagtgg aaccattcct gaatcagttt 3121 atccagggtg ggctcaaaaa gtacctttgg agttatatcc aaaagtgccc attgagacac 3181 tgtctagctc ttgaccgtca agatctcaac caaaagttgg ctctagacgg ctccaaaacc 3241 ggtgattatt gtacgataga cttaaagtct gcgtctgact tattgagcga tgaactcgtt 3301 cacttcgtct ttcgcaaaaa tgagaagttt caaaagcttc tcatttccag tcgtacatct 3361 ttcgcaaagt tcggcacagc cgaatttttg ctcaagaagt ttgccggcgc tggtaatgct 3421 acaactttcc caatccagtc ttacgtttat gcaatgatat gcatatccgc gattctggat 3481 cgtgagggta gaaaacccac acttaagaac gttgaagcat cggcctctcg tcttcgaatc 3541 tatggcgacg atattatttg tcgcaccgaa gacgcagttg tcgtgatgaa ctggcttacc 3601 acatttggcc tacgggtcaa tagtgggaag agcttcctga aaggtaattt cagagaaagc 3661 tgtggtgtcg atgcgtatga cggagttgac ataactccgg tgtacgtgcg gcattacccg 3721 tccgatgaca cttcactcag tccaaaggct ttaacgtcgt tggtcagttg ctctaatctt 3781 tactttaaaa gagctctgta caacgccgcg gactttctaa agaatttggt agaggattac 3841 ttaggccctc tgccattagt ttctgaagac agtcctgtct tgggttggca tactagacaa 3901 aatgcgtaca ctttctcaaa gtggtgtact gaataccagc ggtttaagac ccgagggtat 3961 ttcatcaagg cgaaaaaacg tcttgacacg ctgtctggtt acccagcatt gctgaagttc 4021 ttccacagtc cgtgtgaagg accgcttggt agtctacagg acttacgtcc tgacgaccac 4081 ctcagcaaga ctgattggag atacaagact agtatctcca agaagtggtg ccatgtttga 4141 tgagatatct tacatgttag tctagaaacc tcttttatta agtttctagc cagggggtcc 4201 cattt //