LOCUS BK013568 4439 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gerhypos.4_52 genomic sequence. ACCESSION BK013568 VERSION BK013568.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gerhypos.4_52 ORGANISM ssRNA phage Gerhypos.4_52 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus terradaptatum. REFERENCE 1 (bases 1 to 4439) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4439) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4439 MN034393.1 1-4439 FEATURES Location/Qualifiers source 1..4439 /organism="ssRNA phage Gerhypos.4_52" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786356" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus Gerhypos.4_52" gene <1..1475 /gene="Gerhypos.4_52_1" CDS <1..1475 /gene="Gerhypos.4_52_1" /codon_start=3 /product="maturation protein" /protein_id="DAD50591.1" /translation="FRGPGRSAIRSGPSSIFPDRVGSPSAGVPAADQRSFGGLSCFVV SMSTTRSRAVPPPNIGQGTLKTWLDNNSNKLLDAGGGTPLAPPVTDIATNAAAAKQLT GTQTTVSEAHPDWRRHKRGFFGGDFGGPFSTEKTYVADTSATAVHLSGRYFTSGPPLG HNAVYDGPMLPVRPNVLQFPQSSRSSDDDLDELGTIAISRCSPVNPAANVLTFLGELL SDGLPKLAGSGLKELRALGSKEVGKLLGHEYLNYEFGWKPFISDLRSIANLILTAEKQ LRNFEKNSGKLVRRRYEFPPDVSFSPEVKLNLVGSDPWINPSSDALYRRGVTPTGQVF YLDRIERRQWFSGAFTYYLPPADSLRNGIARYVIEARKLLGLSLTPDNVWALTPWSWA VDWFSDVHELLNNWTNWAIDNQVLAYGYMMEHSIVQRTYNFVGAPTFVSGTVKPAPLT LVQESKIRRQATPFGFGLDWDDFTSTQTAIATSLGLTRRK" gene 1542..1904 /gene="Gerhypos.4_52_2" CDS 1542..1904 /gene="Gerhypos.4_52_2" /codon_start=1 /product="coat protein" /protein_id="DAD50592.1" /translation="MSFTDPQSVTIAGTAISLPRTSVGDNESTYSSSDGLTQLSASHT YGKRTRRVLRIDTAKIAPDVFEPSENVKLSMSLYMVFDLPPVGYTNTDVMAVYNGFKT VYTATSDAMITKLVGGES" gene 2158..2352 /gene="Gerhypos.4_52_3" CDS 2158..2352 /gene="Gerhypos.4_52_3" /codon_start=1 /product="hypothetical protein" /protein_id="DAD50593.1" /translation="MVTIMRDTGPGVKPVRYRIMVTPPGMARPVKVIKSSDPDEILSN LIQILGLRWPYQKPSERQST" gene 2412..4313 /gene="Gerhypos.4_52_4" CDS 2412..4313 /gene="Gerhypos.4_52_4" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD50594.1" /translation="MKSLTSLWSCTANEMAVRCRTSATLDIKTVKSRFEHEGLSFLAI TLADFGKATQKWLDQGFVVPSDVPSFKRARLTGLPAFLQGFLGRVFDPCSGALLDNPD IEAIYAIRQLTLMFSKIALPSHSERNENQLGNRKVVSADRERRAMSDFLQCEQEVKES DELLDPQFLVDLKRMSDLLFGGLFAKVDRDVHWGRTVPKHGPGAVADRLSSNAKWNQR TWTTRLQRVFPADEFLIPNHSFKNELDKELHLLEPGAEVPVRVISVPKTLKTPRIIAI EPTAMQYAQQALSRALRSALEEDGFLRRTIGFTDQEPNRRMACTGSHSGETATLDLSE ASDRVSNQHVLAMLDGYPHLLEAIQSTRSRKADVPGHGVIRLAKYASMGSALCFPIEA MVFLTIIFLGIERELSAPLSRKELIRLFSEQVRVFGDDLIVPRDYVLSVVNELHTFGY VVNVSKSYWTGRFRESCGREYFDGHDVSIVKVREVLPTQRQDASGVISAVALRNQLYW AGAWGSVRWLDDYLGKLLNHFPNVAPTSPLLGRESCLGYEFQTLDPNTHSPLTKGYYV SAKPPIDNLDGAGALLKCLLRNHPEIGDFALSTEDPRDPLPSADAGHLERSGRPERVD IKLGRRSPY" ORIGIN 1 cctttcgggg cccagggcgc agtgctataa ggagtggacc ttcctcgatc ttccctgatc 61 gagttggttc tccatcggca ggagtacctg ccgcggacca aaggagcttt ggtggcctgt 121 cttgcttcgt ggtttccatg agtacgaccc gttcaagggc cgtacccccg cccaatattg 181 ggcagggcac gttgaaaacg tggctggata acaacagtaa taagttgctt gatgcaggcg 241 gtgggacgcc attggcgccc cccgttactg acattgcaac taatgctgct gctgcgaagc 301 agttgacggg gacacagact actgtgtcag aagctcatcc tgactggaga cgccacaaac 361 gtggtttctt cggtggggat ttcgggggtc ccttctcgac ggagaagaca tacgttgccg 421 atacatcggc gacggctgtc catctttcgg gaaggtattt tacatcaggg cctcctctgg 481 gacataatgc cgtttatgac ggtcctatgc tccctgtgag gcctaatgta ttgcaatttc 541 cccagtcatc taggtcatct gatgatgatt tggatgaatt gggtacgatt gcaatatcta 601 gatgtagtcc cgttaatccc gctgcgaatg tcctaacctt tctcggtgag ctgcttagcg 661 atggtttacc aaagctagca ggctctgggc ttaaagagct cagagcactc gggtctaagg 721 aagttggaaa actccttgga cacgagtatc tcaattatga gtttggttgg aaaccattta 781 tcagtgattt gcgttcaatc gcaaatctta ttctcactgc ggagaaacaa ctccgcaatt 841 ttgagaagaa ttctggtaaa ttggttcgtc gccggtatga gttcccaccc gacgtttctt 901 tctctccgga agtaaagctc aacttggtgg gatctgatcc ttggatcaat ccctccagtg 961 atgcgcttta ccggagagga gtcacgccga ccggtcaagt cttctatcta gacaggatag 1021 aaagacgtca atggttcagt ggcgcattta cgtactacct tcctccggct gatagcttga 1081 ggaatggtat tgcgcgatac gtcattgagg ccaggaaatt acttggcctt tcattgaccc 1141 cagacaatgt ctgggctttg accccgtgga gctgggctgt cgattggttc tcagatgtcc 1201 atgagttgtt aaacaattgg acaaactggg ccatcgacaa tcaggtgttg gcttatgggt 1261 acatgatgga acattccatc gttcaacgta cctataactt tgtcggtgcc ccgacttttg 1321 tgtcagggac cgtcaaacct gctcctctta ctcttgttca agagagcaag ataagaagac 1381 aggcaactcc cttcggattc gggctcgact gggatgattt tacatcaacc cagacggcca 1441 ttgctacttc acttggtttg accaggcgta agtagtatcc ttgtagtgcc ctgcgttaaa 1501 acgccaacgg gggtctaacc gggcccctag gagtgatgct catgtcgttt accgatccgc 1561 agtccgtcac gattgctggg acggcgattt cgttgccacg cacttctgtg ggtgacaatg 1621 agtcgacgta ttccagctct gacgggctta cgcagctgtc cgccagccat acctatggca 1681 agcgtacgcg ccgcgtgctg cgaatcgaca ccgcgaagat cgcgcccgac gtgtttgagc 1741 cgtcggagaa tgtcaagctt tccatgtctt tgtacatggt gtttgacctc cctccggtcg 1801 gctacacgaa tacggacgtg atggctgtgt ataacggttt caagaccgtc tacacggcaa 1861 cttccgacgc gatgatcacg aagctcgtcg gcggcgagtc ttaacagact cgctatatgc 1921 cggcggctca tgatcccgtg ccgccagatc gagagcgccg tttggctgac tctcaatggc 1981 actctgggag gagaaatctt cccggaggcc ggaggcgcgg cgattgcgac ccccgcacca 2041 ctataagccg aaagcttcta gtgattgtgg tggctgtaat caacgccctt tatctggtcg 2101 gtgatgccct ccttacgaac ggacataatg tctgcccgta agttgggagt aaactcaatg 2161 gttactatca tgcgcgatac cggtcctggt gttaagccag ttcggtatcg aatcatggtg 2221 accccgccag gaatggcgag gccggttaag gtaataaagt cctctgatcc tgatgagatt 2281 ctttcgaatc tcattcagat ccttgggctt cgttggcctt accagaaacc atctgagcgt 2341 cagtcgactt aatcctcgac tgcggcgaca gagctatgga ctagccaccc ttccatgaaa 2401 ggagggggac tatgaaaagc ctgacgtcac tctggtcctg tacagctaat gaaatggctg 2461 tacgatgtcg cactagcgcc actcttgaca taaaaactgt caagagtcgg ttcgaacacg 2521 aggggttatc gtttttggcg ataaccctgg cggactttgg aaaagctacc caaaagtggc 2581 ttgaccaagg tttcgtcgtc ccttcggacg ttccctcttt taagagggcg cgtcttactg 2641 gtctccctgc atttctgcaa ggtttccttg gacgtgtgtt cgacccatgt agtggggcgc 2701 tattggacaa tccggacatt gaagcaatct atgctattcg tcaactaacg ttgatgttta 2761 gtaagatcgc ccttccgtct cattccgaga ggaatgagaa tcagcttggc aaccgtaagg 2821 ttgtctctgc tgatcgcgaa aggcgagcaa tgtccgattt tctccaatgt gagcaggagg 2881 tgaaggagtc agatgagctt ttggacccac aatttcttgt ggatcttaag cgtatgtctg 2941 acttgctttt tggcggcctt tttgccaaag tggatagaga tgtccactgg ggcaggaccg 3001 ttcctaagca tggcccaggc gctgtcgctg atcgacttag ctcgaacgct aagtggaatc 3061 agcgaacctg gactactcgt cttcagcggg tattccctgc tgatgagttt cttattccga 3121 atcattcttt taagaatgaa ttggataagg agcttcacct cctcgagccc ggagcagaag 3181 tccccgttag ggtgatttct gttcctaaga cgctcaaaac acctcgaatc attgctattg 3241 agcctactgc gatgcaatat gcgcagcagg ctcttagccg tgctcttcga agtgcgctgg 3301 aagaggatgg tttcctcagg cgcactatcg gatttacaga ccaggagcct aatcggcgaa 3361 tggcctgtac tggctcccac agcggggaga cagctacact cgatttgagt gaagcctccg 3421 atcgtgtttc gaaccagcat gtactggcca tgttggatgg atatcctcat ttgcttgagg 3481 ctattcaatc cacacggtcc agaaaggctg atgtacctgg tcatggcgtt atacgccttg 3541 ccaagtacgc ctctatgggc tcagctctct gctttcctat tgaggcgatg gtattcctta 3601 ccatcatctt tctaggaata gaaagggagc ttagtgctcc gctttctcgg aaggagctga 3661 tcaggctctt ttccgagcag gtgcgcgtct ttggcgacga tttgatcgtc cccagagact 3721 atgtgctgtc cgttgttaac gaactacaca cttttgggta tgtagttaac gttagcaagt 3781 cttactggac cggaaggttc agggagtctt gcggacggga atactttgat ggccatgacg 3841 ttagtatcgt caaggtcaga gaggtactcc cgacacaacg gcaggatgcg agtggagtaa 3901 tttctgccgt ggccctacgc aaccagcttt attgggctgg tgcatggggt agcgtcagat 3961 ggttggatga ctacctaggg aaattgttaa atcatttccc gaatgtagca ccgacctccc 4021 cactgttggg cagggaatcg tgtttgggat atgaattcca aacacttgac cctaatactc 4081 acagcccctt aaccaagggc tactatgtga gtgccaagcc tccaatcgat aatctcgatg 4141 gggcaggtgc cctcctcaag tgtcttttgc gtaatcatcc agaaattggt gatttcgccc 4201 tcagcactga ggatcctcgt gatcctttgc caagtgctga tgccggacac ttggagcgtt 4261 ctggacgccc cgagcgcgtc gacatcaaac tcggaaggag atcaccatat tagtatggtg 4321 atcaacctcg aatcatcgag gttgtgggag atgaccaaat tggtcacccg ttcttccgcg 4381 ttggaccata cgatcagtat agtcccacgg gagatgtgat cttaattgat cacgggaga //