LOCUS BK013402 3840 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gerhypos.4_58 genomic sequence. ACCESSION BK013402 VERSION BK013402.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gerhypos.4_58 ORGANISM ssRNA phage Gerhypos.4_58 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus terrenecus. REFERENCE 1 (bases 1 to 3840) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 3840) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-3840 MN035336.1 1-3840 FEATURES Location/Qualifiers source 1..3840 /organism="ssRNA phage Gerhypos.4_58" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786362" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Gredihovirus; Gredihovirus Gerhypos.4_58" gene 108..1310 /gene="Gerhypos.4_58_1" CDS 108..1310 /gene="Gerhypos.4_58_1" /codon_start=1 /product="maturation protein" /protein_id="DAD49996.1" /translation="MAFLPEMKSRTEPTGPYLYSYTRFLQNLPWTESVHWSSVTETII SQCHKGTWPPPYGSKDDRGGLMSLTRQETSYPQYVEITSPFVKGKVLLLSTNLFHPMG SSSVAPTDISVLNAFGTSAIARVLPTNPNSSLSTALGELKKDGLPSLPGSSMREQTNI ARRAGNEFLNAEFGWLPLVNDIKAFADSVKRSKQLIDQYMRDSDRKIRRRFTPAPINH SVRTFVGPGQCTGGNTVNNTTITETSHERYWFSGAFRYHVPVGDDFYSRLVRYEQLSH RLFDTRLTPELLWNLAPWSWAIDWFTNAGDVIHNISSLGADGLVMQYGYAMRHAYIDE LASGRFTITEGAGRWSGWVSKRVLSETKYRAKAHPYGFGIDDLSLSAIQYAILAALGL TRGHRSTM" gene 1404..1769 /gene="Gerhypos.4_58_2" CDS 1404..1769 /gene="Gerhypos.4_58_2" /codon_start=1 /product="coat protein" /protein_id="DAD49997.1" /translation="MGFADPATITVNAVAQTLNRVSSGVNTGTFRTNDGNFTLEIAHS YGKRNRHTAVLKQRKIAADPLAPTINVETVQQVRITVDTPNNLAFTVAENKLLMDGFA AWLAASSGAQETKLLGGEN" gene 1756..1938 /gene="Gerhypos.4_58_3" CDS 1756..1938 /gene="Gerhypos.4_58_3" /codon_start=1 /transl_except=(pos:1756..1758,aa:Met) /product="hypothetical protein" /protein_id="DAD49998.1" /translation="MAKTKSVDGPEKFSRPVRFAFVVILVIITWLLVVACLSAAFSGL VDISTELTRGQEQSTS" gene 1948..3750 /gene="Gerhypos.4_58_4" CDS 1948..3750 /gene="Gerhypos.4_58_4" /codon_start=1 /transl_except=(pos:1948..1950,aa:Met) /product="RNA-directed RNA polymerase" /protein_id="DAD49999.1" /translation="MKSLTELWFNASLELGALCHVSTSRDYKTVAVRFEHEGLSFLTI TLPQFGKDFEKSLAAGHVGHDSFAGFRRMSGLPRFLGGFLDRVFDRGSGRLLDVPCMD SIYAVRQLTLMFGKISVRCSDAREQGALRKFIECEQDVRHSDRNMPEDLITEFSSMSL RLFGDVLALADLAVYEGTLTPKHGPGKTADKLSGNRKFDQREWTRRLESIFPYGDNAI PNWRFNYLLDSVRILEPRDERAVKVTLVPKTLKTPRIIAVEPTCMQYMQQAIAEHLVR SLEGDFLPFSLIGFLDQTPNQRMAQEGSVTGGLATLDLSEASDRVSNQHVRAMLKHFP HLSEAVDATRSRKADVPGHGVIRLAKFASMGSALCFPIEAMVFTTIVFMALERVHKRR LTLKDVSLFRGKVRVYGDDIIVPTDSMVTVIDLLEAFGLKVNVDKSFGTGKFRESCGK EYYDGRDVSIVRVRSVLPSSLSDVDEVISTVSLRNRFYEAGLWRTAHWMDTWIEPLLG GKYPYVNSDSPVLGRVSFVGFDTGRIERDAQYPQVKGYCVVAKPPSSMTSGEALLLKW FLKRGDKPFADRDHLIASGRPKSVTLRLRWARSA" ORIGIN 1 cgaggagggt ttacccctcc tcgcacacgg cgctcacatg cgcttgttaa aacacccatc 61 tccgtaaaat cggagatgag ccgtcatgac tgtgtgaggg atctgcaatg gctttcctac 121 cggaaatgaa atcccggacg gagcctacgg gaccgtactt atattcgtac acccggtttt 181 tgcagaatct tccttggacc gagtcggttc actggtcctc tgtgactgag actataataa 241 gtcaatgtca caaaggcacg tggccgcctc cttatggctc caaggacgat cgtggtgggc 301 tcatgtctct aacgagacag gagacgtcgt acccgcagta tgtggaaata acctctcctt 361 ttgtgaaagg taaagtccta ctgctgtcga ccaacctctt tcatccgatg ggatcatcct 421 cggtggcgcc tacggacatt agtgtcctca acgctttcgg gacttccgcg attgcaagag 481 tgttgccaac taatcccaac tcatctctct ctactgctct aggtgagcta aagaaagatg 541 ggctaccgtc acttccgggt tccagcatgc gcgagcagac taacatcgct cgtcgcgcgg 601 ggaatgaatt cctcaatgct gaattcggtt ggttaccgct tgtcaacgat atcaaagctt 661 ttgcggactc tgtgaagagg tcgaaacagc ttatcgatca gtacatgcgg gattctgatc 721 gcaagatcag aagacggttc acaccggcgc ctatcaacca cagcgtcagg acctttgttg 781 gtcctggtca gtgtactggc ggtaataccg tcaataacac aacgatcacg gagactagtc 841 acgagcgcta ctggttctca ggagcgtttc gttaccatgt ccctgtggga gacgactttt 901 acagtcgcct cgtgagatac gaacaactct cacatcgtct ctttgacact cggcttacgc 961 ctgagttgct gtggaacctg gcaccgtggt catgggccat cgattggttc accaatgcgg 1021 gagacgtgat acataacata tcctcgcttg gtgccgatgg tctagtgatg cagtatggct 1081 acgcgatgag gcatgcctac atcgatgagc tcgccagcgg tcgtttcacg atcactgagg 1141 gggctggacg ttggtcagga tgggtctcta agcgagtcct atcggaaacc aagtaccgag 1201 ccaaagcgca tccgtacggt ttcggtatcg acgacttgtc gctatctgcg atccagtacg 1261 cgatacttgc cgctctcggt ttaacccgag ggcaccggtc taccatgtag gtagcccgta 1321 aagcggagct gtccattcga caaccccacc tgcggcatcc aaccaggatg ttcgcaatct 1381 cttcaaatga aggagctcct cccatgggtt tcgccgatcc cgcgacaatc accgtcaacg 1441 ctgtcgccca gacccttaac cgggtctctt cgggcgtcaa caccggtacc tttcgtacca 1501 acgacggtaa cttcacgctg gagatcgctc actcctacgg caagaggaac cgccacacgg 1561 cggtcctcaa gcagcggaag attgcggccg acccactggc ccccactatc aacgtggaga 1621 ccgtgcagca ggttcggatc accgtcgata cgccgaacaa cttggcgttc acggtggccg 1681 agaacaagct gctgatggac ggtttcgctg cctggctggc agcgagttcg ggagctcagg 1741 aaactaagct cctcggtggc gaaaactaag tccgtggacg gcccagaaaa gttctcccgg 1801 cccgtcaggt ttgccttcgt ggtgatcctt gtgatcatca cctggctcct tgtggtcgcg 1861 tgcctctctg cggctttctc cggcttggta gacatctcta ccgagctaac tcgtgggcag 1921 gaacagtcaa cctcctagga ggaagctgtg aaaagcctga ccgagctctg gtttaatgcg 1981 tccttagaac tgggcgcatt gtgtcatgtg agcaccagcc gcgattataa gacggtcgcg 2041 gttcggttcg aacacgaagg gttatcgttt ctcacgatta ccctgcccca gttcggcaaa 2101 gacttcgaaa aaagtctagc cgccgggcat gttggtcacg actcatttgc cggctttcgc 2161 cggatgagcg ggctcccccg attcctcgga ggtttccttg accgagtgtt cgaccgtggt 2221 agtggtcgct tgctcgatgt tccatgcatg gattccatct atgccgtgcg tcagcttacg 2281 ctaatgttcg gcaagatctc tgtaaggtgc agtgatgcac gcgaacaggg cgccctgcgg 2341 aagttcatcg agtgtgagca ggatgtgaga cacagcgatc gtaacatgcc tgaggatctc 2401 attactgaat tctctagcat gtcgctgcgt ctgtttgggg acgtcttggc actcgcagac 2461 ttggcagtct acgagggcac acttaccccc aaacacggac cgggtaaaac cgctgacaag 2521 ctctcgggca accgaaagtt tgaccaacgg gagtggaccc gtcgactgga gagcatcttc 2581 ccatacgggg acaatgctat tccaaactgg agatttaatt atctcctcga ttccgttcgc 2641 atcctcgaac ctcgggatga gagggctgta aaagtcactc tcgtcccaaa gacgctgaag 2701 accccacgaa tcatcgccgt cgaaccgacc tgtatgcaat atatgcagca ggccatcgct 2761 gagcatctgg ttcgtagctt ggaaggggac tttctccctt tctcgcttat cggcttcctc 2821 gatcaaacgc ctaatcagcg tatggcccag gaaggctccg tcacaggagg gcttgccacc 2881 ctcgatctgt ccgaagcttc cgatagagtc tccaatcagc atgtacgtgc gatgctgaag 2941 cattttcctc acctctctga ggcggtagat gccacgcgaa gccggaaggc tgatgtacct 3001 ggtcatggcg tcatacgctt ggccaagttc gcgtctatgg gttctgcact ttgctttccc 3061 atcgaagcga tggtctttac gactatcgtc ttcatggcac ttgagcgagt gcacaagcgc 3121 cgcttgaccc tgaaagatgt ttctctcttc aggggcaagg tgcgggtcta tggtgacgat 3181 ataatcgtcc ccacggatag catggtgaca gtgatcgacc tccttgaagc ttttgggctc 3241 aaggtcaatg tcgacaagtc ttttgggacg ggaaagttcc gagagtcttg cggaaaggag 3301 tactacgatg gccgtgacgt ttccatcgtc cgtgtccgga gtgtacttcc ttcctcgctg 3361 tctgatgtcg atgaggtgat atcgaccgtt tctctgagga accgctttta cgaagcggga 3421 ctttggagga cggcccactg gatggacacg tggatcgagc cccttttagg aggcaagtac 3481 ccatatgtga acagtgattc acctgtgctg ggtcgcgttt cgttcgtcgg gtttgacacc 3541 gggcgaattg aacgtgacgc gcagtacccc caagtgaaag ggtattgcgt agtcgccaaa 3601 ccgccgtctt caatgacgtc gggcgaggcg ctcctgctca aatggttcct taaacgcggc 3661 gataagccat tcgctgacag ggaccatctc attgcatcag gacgtcctaa gtccgtcaca 3721 cttcgactta ggtgggcccg ctcggcttag ccgagcgtgg agtggcttcg gccacgtcgg 3781 gagtctgatg acatccctag gcttcatgcc tgaggagatg cattggctgt gcatctcccg //