LOCUS BK013546 4107 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gerhypos.4_62 genomic sequence. ACCESSION BK013546 VERSION BK013546.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gerhypos.4_62 ORGANISM ssRNA phage Gerhypos.4_62 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Pujohnavirus; Pujohnavirus geocola. REFERENCE 1 (bases 1 to 4107) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4107) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4107 MN033378.1 1-4107 FEATURES Location/Qualifiers source 1..4107 /organism="ssRNA phage Gerhypos.4_62" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786367" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Pujohnavirus; Pujohnavirus Gerhypos.4_62" gene 68..1219 /gene="Gerhypos.4_62_1" CDS 68..1219 /gene="Gerhypos.4_62_1" /codon_start=1 /transl_except=(pos:68..70,aa:Met) /product="maturation protein" /protein_id="DAD50513.1" /translation="MVGRLRSSLEIRTSGNRWFNNNPGGATGAGQVTTGFHTCSDTTG PGDCGPLDISSVSTSGGVINRFNTGAFSSQFRDYLCDWLRSTGNGPHLGVSGEPNDIT LSNEGAARTNPSRPYVDVPASVLDIGTAPTTLANNIRDLRRRGVPRRAPPRPSKRELL RGGGEAWLTYQFMIRPIVGDIVKLMSASQQVHNRVQEINRLFHGTGLRRTVSIYSGST AQKSNITVQSVGTLISRTFDIVTTVDSWVHCRWKPETECGLRPPPRQIQAWAGRSVYG ITIDLSTLWELTPWSWLADWFGDVGTYLKASRNIVPARLTDVACMTHRRTLYSCDSFA SSDTTMSSIRKIREQKSRRIGFLSPLNAHFNFLNGSQMGILAAVGATRS" gene 1260..1631 /gene="Gerhypos.4_62_2" CDS 1260..1631 /gene="Gerhypos.4_62_2" /codon_start=1 /product="coat protein" /protein_id="DAD50514.1" /translation="MAFADPAVVTINAVAKNLVRINQDGYGSTYRLRSALDDITLLVK NTSYFSKKLGQNIDRHSVDITQTVFPTSTLPSYTRHCYIVIENQQGDTLTDPVNVASG ILSYLTAGSNANLNKLMNSES" gene 1721..3817 /gene="Gerhypos.4_62_3" CDS 1721..3817 /gene="Gerhypos.4_62_3" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD50515.1" /translation="MKSRQVSVLLHVFEALLKDASQAYPELKESFLKDYERIALYSQI RGLTVFTLDLPNLDSLLLRGLDTGRLCLEGPLCHAVSKGTRVPRLFSGLWLRVFEKDS SLKLDSDVTAVALLRQLTCLGKSLRVECSQDRVLATLENFHDVEGTLREPTLQWDLDS LDLCGKLHISLADCVGLPFAHRMPISGQLSIYTGLTDGHTSVRDRDLLQQCQRVADIV VESLGYFDPLSFSAKLEKDGLGIGFKHGPGAVADRLKNHEKSRFPNWPHKLQQTFPFG DCAFMPNDPRDLPINHELASRLICVPKSAKAPRLIAAEPVQHLWCQQLTWRWLESRLK SLFKGSFVNFRRQDLSAEMVAEASLNRKLATVDLSDASDRLSCWTVERIFRRNYSVLR ALHAARTRYLRSDESLPGSSFFIKLKKFASQGTATTFPVQTIVFLVIAIASAIGDDEV TMESIMKLRNHVRVYGDDIILPSHGYARLLRIMDLLQLKVNVAKSYRDGYFRESCGSN AYRGYDVTPVKAKEIVADGPTSCQAVIDTSNNLFCKGYWHASQYLISTLPPRIQRGLR IVGRNEVGYSGLVSFSGSDESHLVKRWNSRLHRYEGRIWRISPKPQFETRGEFVSLLD FLSRPHNPSIARTVSVYGRARKITSDLLWEPLNMGAHGNISLPSDRVVHVSSTFQGRR IRRGRRKTRLSLRSTA" ORIGIN 1 ggtccatccg gaccccgcat gattctcatc atttgagaat cattttccct caacgaggag 61 cttacctgtg gtagggagat tgagatcgag cctcgaaatc cggacttccg gaaatcggtg 121 gtttaataac aatcctggcg gagccactgg tgctgggcag gtcactactg gttttcatac 181 ctgtagtgat actaccggcc ccggtgactg tggaccactg gacatcagtt cagtatccac 241 atccggcggc gttatcaaca gatttaatac aggagcattt tcgtcacagt ttcgtgacta 301 cttatgtgac tggcttagat ctactggtaa cggtccccac ctaggcgttt ctggtgagcc 361 caacgacata accctttcaa atgaaggggc tgcgcgtact aacccgagcc gtccatatgt 421 ggacgtcccg gctagtgtcc tcgacatcgg cactgctcca actacgctcg caaataatat 481 acgcgacctt aggaggagag gtgttcctcg acgggccccc cccagacctt cgaagcgtga 541 gcttcttagg ggtggcgggg aagcctggtt gacctatcaa ttcatgatta ggccaattgt 601 cggtgacatt gtgaaactta tgtctgctag tcaacaagta cacaatcgtg tacaagagat 661 taacagactg ttccatggta ctgggctcag gagaactgta tctatatact ccggttcgac 721 agcacagaag tcaaatatta ctgtgcagag tgtcggtacg ctcatttcaa gaacgttcga 781 cattgtcact accgtagatt cttgggtcca ttgtagatgg aagcccgaga ctgagtgtgg 841 ccttaggcct ccacccagac agatacaggc gtgggctggt cgctctgtgt atgggattac 901 catagactta tcaactctat gggaactcac accttggagc tggctagcgg actggttcgg 961 tgatgtcggg acttatttga aagcctcgag gaacatcgtt ccagctcgtc ttacagacgt 1021 tgcctgtatg acccaccgcc gtacgttgta ctcttgtgat agtttcgcta gtagcgatac 1081 taccatgtcc tctattcgta agattagaga acaaaagagt agacgtatcg gttttctttc 1141 tcctctcaat gctcatttta acttccttaa cggaagtcaa atgggtatat tggccgcggt 1201 cggtgcgacg cggtcgtgag accgtattgc acctaaacgc gagccaatag gagttagaca 1261 tggcattcgc agatccagca gtcgtcacca tcaacgcagt tgcgaagaat ctcgtccgaa 1321 ttaaccaaga tgggtacgga agtacctatc ggcttcgttc ggcacttgat gacatcactc 1381 tgctcgtcaa gaacacttcc tacttcagta agaagttggg tcagaatatt gatcgacact 1441 ctgtcgacat tactcagact gtgttcccaa caagtacgct gccgagttac acccggcatt 1501 gctacattgt aatcgagaac caacagggtg ataccctgac ggatcccgtc aatgttgcaa 1561 gtggaattct gtcgtatctt acggcgggtt ccaacgcgaa cttgaacaaa ttgatgaact 1621 ctgagtcgtg atcttataat aagaacaaca actagagctc gactgagggg acactgcgag 1681 gacttgcggt ttcgaataat cacttccgaa aggaacgatt atgaaaagtc gtcaagtcag 1741 tgtcttactc cacgtctttg aggcgcttct taaagatgcg tctcaagcat acccggagtt 1801 gaaggaaagt tttctcaaag attatgagag aatcgccctt tactcacaaa tacgtggtct 1861 aacagttttc acgttagacc taccgaatct agactctcta ttacttagag gcctggatac 1921 gggccgcctc tgccttgagg gaccgctatg tcatgcggta tcaaagggga ccagagtgcc 1981 gagattattc tcggggctct ggttgcgggt atttgagaaa gactccagtt taaagctgga 2041 ctccgacgta actgcagttg ctcttctcag gcaattaaca tgtctgggta agtcactgcg 2101 cgtggagtgc tctcaagatc gcgttttagc gaccctggag aacttccatg acgttgaagg 2161 aacgcttcgt gaacctactt tgcagtggga tctcgattcg ctcgatctct gtgggaagct 2221 tcacatcagc cttgctgatt gtgttggctt acctttcgct caccggatgc caatctctgg 2281 ccagttgtcg atttatactg gactcacaga cgggcacact agtgtgcgag acagagacct 2341 cctccaacaa tgtcagcgag tagctgatat tgttgtagag tccctaggtt actttgaccc 2401 gcttagcttc tcagctaagc tggaaaagga tggccttggg attggcttta aacatggacc 2461 tggtgctgta gcggaccggc ttaagaatca cgagaaatcg aggttcccaa actggccgca 2521 caagctccag caaacctttc cctttggtga ttgtgctttt atgcccaatg accctaggga 2581 tttgccaatc aatcatgaat tggcaagtag gctgatctgt gtgccgaaga gtgcaaaagc 2641 tcctcgtctc atagccgcgg aacctgtaca gcacctatgg tgccaacagc ttacgtggag 2701 atggctagag agtcgactta agtccctttt caagggttct tttgtcaact ttcgtcgcca 2761 agatctctca gccgagatgg ttgctgaagc atccttgaat cggaagttgg caacggtaga 2821 tttatccgat gctagcgacc gactttcttg ctggaccgtg gaacgtatat ttcggaggaa 2881 ttactccgtt ctacgcgctc tgcacgccgc aagaactagg tacctgcgta gtgacgaatc 2941 actaccagga agtagcttct ttataaaact aaagaagttt gcctcgcaag gtacagcgac 3001 gacgtttccg gtgcagacca ttgtatttct cgtcatagct atagcttctg ctattggcga 3061 tgatgaggtt acgatggaaa gcatcatgaa acttcgtaac catgtccgtg tgtatggcga 3121 tgatattata ttgccatcac acgggtatgc gcgactgctc cgcattatgg acttgcttca 3181 gttaaaagtc aatgtggcta aaagctacag agacggatac tttcgcgagt cctgcggctc 3241 caatgcgtac cggggttacg atgtaacccc cgttaaagcg aaggagatag tcgcagacgg 3301 cccgacctcg tgtcaggctg tgatagacac gtcaaataac cttttttgta aaggatactg 3361 gcatgcttca caatacctta tttccactct tcctccgcgt atacaacgtg gacttagaat 3421 tgtgggaaga aacgaggttg ggtactccgg tctcgtctct ttctctggaa gcgatgaatc 3481 tcatcttgtt aaaagatgga attcccgcct acataggtac gagggaagga tttggagaat 3541 atctccaaaa cctcaattcg agaccagggg agagttcgtc tcgcttcttg actttttgtc 3601 aaggccacac aatccgagca ttgctaggac tgtgtcggta tacggacgag ctcggaagat 3661 cactagtgat cttctatggg agccccttaa catgggcgct cacggtaata ttagcttgcc 3721 gtcagatcga gtggttcacg tgtcttcaac ctttcaagga agaagaatac gcagaggtag 3781 acggaaaacc cgtctatcgc tacgttctac cgcatgaagc ggtagttcac gagttcaact 3841 tgatgaatga cggagagctt aatatatccg atattgagct ccatgaagcc tccacctatt 3901 ttatatagga gattgacatg cgtacccata cttctgaaat caaaaagatg actacggaag 3961 atatccaact ctacctcctc cagcacaaga attctcttgt gtttgaggaa acgaatcgga 4021 tgtctacacg ttggacatcc aatatgattc ggattatgga gcgcgaactg tcagttcggc 4081 ttcattaagt taagggtggt aggagtt //