LOCUS BK013477 4283 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage Gerhypos.4_9 genomic sequence. ACCESSION BK013477 VERSION BK013477.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage Gerhypos.4_9 ORGANISM ssRNA phage Gerhypos.4_9 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Pujohnavirus; Pujohnavirus geoenecus. REFERENCE 1 (bases 1 to 4283) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 4283) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4283 MN035605.1 1-4283 FEATURES Location/Qualifiers source 1..4283 /organism="ssRNA phage Gerhypos.4_9" /mol_type="genomic RNA" /isolation_source="soil" /db_xref="taxon:2786375" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Pujohnavirus; Pujohnavirus Gerhypos.4_9" gene 103..1200 /gene="Gerhypos.4_9_1" CDS 103..1200 /gene="Gerhypos.4_9_1" /codon_start=1 /product="maturation protein" /protein_id="DAD50263.1" /translation="MSPRTRSRGLLRPKGNWGRFGQVFGGFDVVNAAESCSDQTGFGD CDPLSIEKVSVEGGLINRGVVGDYWNAWFTDYAADVFDNFDNFPHHTSLPGNLTNEAA ATAGAARSNPSRPYVDLPVALFELRELPDLIKSAGSGILRRWGSDNLKLQFGINPLIG DLVKLAQFEDAMDRRVKQLEAFRVLRSYRKTMTVGTFSDSGVYGKALQSQGWFAWGDF HANTKQEVRVHCRWSPTMDLSWLAQPTAMRELARRAVLGLTVDSLTAWNALPWSWLTD WASNAQEFFTATRNLVPAALTGVHVMRHTKTVYEYGGYASSDGWEKIQPAKITRESKT RTPSFVAPVAHFPFLDGRQVGILGSLAVTRL" gene 1241..1600 /gene="Gerhypos.4_9_2" CDS 1241..1600 /gene="Gerhypos.4_9_2" /codon_start=1 /product="coat protein" /protein_id="DAD50264.1" /translation="MFADPQSVTINSVAKSLVKINQDQYSSEYALRTATEDYRLRIRN TSYRPKGSSVLFDRHNAELVHTVFATSTAPAFVRKTYVVVENQQGDTLTDPGYIAQGL FAWLTSANVTKLMNFES" gene 1699..3843 /gene="Gerhypos.4_9_3" CDS 1699..3843 /gene="Gerhypos.4_9_3" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD50265.1" /translation="MKSQVNNLLHVLHGVRKDIEAAYPELKEGLTKDFVRIALYCQNR GIGFFTLDLPHLESLLLQGLETGRLMLEGPLSSAVSKRIKVPRLFSGLWLRIFDKDSC LKHEVDVTALAMLRQVLVLGKKLEIECPPDRIQATVGAYHDIERRLRRPDLNWSGDEL GVSRTEGGDANRSFFGVGGDLQHDLWSSDESPACQEEGKKKAAGGTNEHLNPMNLSIA QAVDLVRAEDYTNLPLFGEGNQYESQAADARLLHKIQQVADLVIGAFAPLNPRRFSAL MEQRGQGIGFKHGPGAVAERLKNWEKSEFLNWPLKLQGTFPYEYCGVTAAGLLMGRRP LNHEVASRLICVPKTRKSPRLIAAESTSHQWCQQLILTFLFRQCEKLFKGSFIDFKDQ SKSGEMVLLASRDRDLATVDLSDASDRLSCWTVERMFRANSSILIALHAARTRYLRDE ISKDTGFLSLRKFASQGTATTFPVMSLTMLFIALGATLKDDENVTWQTLWKYSNQVRV FGDDIILPAHGYDRLLRAMELLQLKVNAAKSYVHGHFRESCGVDGYLGYDVTPLKPKR IDGDSPASCQAVVDNSNNLYKKGYWNASAAMFGLLPERLRRATRVVGKYDAGSSGLIS YCGDDERHLGKRWNTRLHRYEVRVWGALPQPQRNRRNGYAALLDFFASKHNRGMPRVV SEYADIRKARIGLQWVPSYTLGMPPKGSQDDH" gene 4051..4257 /gene="Gerhypos.4_9_4" CDS 4051..4257 /gene="Gerhypos.4_9_4" /codon_start=1 /product="hypothetical protein" /protein_id="DAD50266.1" /translation="MSKKITARGREEVKLMKSLIANLRGSGVLTPTFAYHVANSYRLD VGKELTYRAWRLIARECGQSLLRR" ORIGIN 1 ggtccgtcct ggaccccgca tgattctcac gatcccatcg atgatcaatc aatggaacct 61 ggtcgtgaga tcccttaacc cctaactact ggagtatgac gtatgtcacc gcgaacaaga 121 tctagaggcc ttttgcgccc gaaagggaac tggggccgtt ttggtcaagt ttttggtgga 181 tttgatgtgg ttaatgctgc agaatcttgt tcggatcaaa ccggatttgg agactgcgac 241 ccgttgtcta ttgagaaggt ctctgttgaa ggaggcctaa tcaatcgtgg tgttgtcggg 301 gattattgga acgcgtggtt tactgattac gcggccgatg tattcgacaa ctttgacaac 361 ttcccacacc atacgtcttt acctggaaac ttaacgaatg aggctgcagc tactgcaggt 421 gcagccagaa gcaatccaag caggccctat gtggacttgc ccgttgcttt attcgaactc 481 agggaattgc ctgacctcat taaatctgcg gggagtggta tcctccgtag atggggttca 541 gacaatttaa aactccaatt cggcattaat ccgctgattg gagatctcgt caagttagcg 601 cagtttgagg atgcgatgga tcgcagagtc aaacagctcg aagcttttcg agttctgaga 661 agttaccgga agacgatgac tgttggtaca ttctctgatt caggcgtcta tggtaaggcg 721 ctacagagtc agggatggtt tgcgtggggt gatttccatg caaacaccaa gcaagaagtt 781 cgggttcatt gtcggtggtc tcccaccatg gaccttagct ggcttgctca gccaacagca 841 atgcgtgagt tggccaggag agcggtattg ggtctcactg tcgattcgtt gacagcttgg 901 aacgctttac cttggtcctg gttaaccgac tgggccagta acgcgcagga gttcttcact 961 gctacgcgaa atctggttcc agccgccctc actggcgtac acgtcatgag gcacactaag 1021 acggtttatg agtatggagg ctacgcctca tccgacgggt gggagaaaat ccaacctgcc 1081 aaaattactc gcgagtccaa aactcgcacg ccgtctttcg ttgctccagt cgctcacttc 1141 ccgtttctcg acgggaggca agtgggcatt ctcggctcgt tagcagtaac gaggctgtga 1201 ggccccgtat agcaacacga actgagtcag gagtagatca atgttcgcag acccacaatc 1261 agtcaccatc aattcggtgg cgaaaagcct cgtcaagatc aatcaggatc agtactcttc 1321 ggagtacgcc ctgaggaccg cgactgagga ctatcgcttg aggattcgga acacttcgta 1381 ccgcccgaag ggaagcagcg tcctgtttga caggcacaat gctgaactcg tgcatacggt 1441 gttcgcgacc tcgactgcgc cggcgttcgt ccgaaagact tacgtcgtag tcgagaatca 1501 gcagggtgac accctgactg atcccggcta tattgcgcag ggattgtttg cctggcttac 1561 cagtgcaaac gtcaccaaat tgatgaactt cgagtcctaa gagagagcgg ctttagctgc 1621 actctcaaag gagagaaact cggaggtcag gttgtgtgct tgcggcttgg atagacaccc 1681 ctagaataag aggcgactat gaaaagccaa gtgaataatc tactccatgt cctgcatggt 1741 gtccgtaagg acatcgaagc agcatacccg gagttaaagg aaggactcac gaaagatttt 1801 gtgagaatcg ccctttattg tcaaaatagg ggaatagggt tctttaccct agacctacca 1861 catctcgagt ccctattact tcagggactt gagacgggtc gccttatgct cgagggaccg 1921 ctttcttctg cggtttccaa gaggatcaaa gtgccgagac ttttctcggg actttggttg 1981 cgtatttttg acaaggactc ttgtttaaag catgaggtcg atgtcacagc tctagctatg 2041 cttcgccagg tacttgtact tggcaagaag ttggagatag agtgccctcc tgatcgcatt 2101 caagcgacgg tgggggctta ccatgatatc gaacgcagac tccgtcgccc agatcttaat 2161 tggtctgggg acgagcttgg ggtctctcga accgaaggag gcgatgcaaa tcgttctttc 2221 ttcggtgttg gtggcgatct tcagcacgat ctctggtcgt cggatgaaag tccggcgtgc 2281 caggaagaag gcaaaaagaa agctgccgga gggaccaacg agcatctgaa ccccatgaac 2341 ctgagcattg ctcaggccgt ggatttggtt cgggccgagg actatactaa tcttcctctc 2401 tttggagagg gtaaccagta tgagtctcaa gccgctgatg cacgtctcct ccacaagatc 2461 caacaagtag cggatcttgt gatcggtgcc tttgctccgc taaaccctcg gcgcttctca 2521 gcgttgatgg aacagcgggg tcaaggtatc ggctttaaac atggacctgg tgcagtagcg 2581 gaacgactaa agaactggga gaagtccgag ttcctaaatt ggccgctcaa gcttcagggt 2641 accttcccct acgaatactg tggtgtcaca gccgcaggac ttctgatggg gcgacgtcct 2701 cttaatcacg aggtagcgtc tagactgatt tgcgtgccta agactcgtaa gagccctagg 2761 ttgattgcag ctgaatcaac atcacatcag tggtgtcaac agctcattct cacgttcttg 2821 tttcgtcagt gtgagaagct ctttaagggc tccttcattg acttcaagga ccagtcgaaa 2881 tcaggtgaaa tggtactctt agcctccaga gatcgagatc ttgctacggt tgatctatcc 2941 gatgcaagtg accgactctc gtgttggacc gtggagcgta tgtttcgggc gaatagctcg 3001 attcttattg ctctgcacgc cgcacgtacg aggtaccttc gagacgaaat ttcgaaggat 3061 actggcttcc tgtcattaag gaagtttgcc tcgcagggta ctgctactac ttttccagtg 3121 atgagcctaa caatgctttt tatcgcattg ggcgctacgc tcaaggacga tgagaacgta 3181 acttggcaaa ccctgtggaa gtatagtaac caggttcgtg tgtttggcga tgacataatt 3241 ttgccagcac acgggtatga tcgtctacta cgtgccatgg aactccttca gttgaaagtg 3301 aacgcagcca aaagctacgt tcacggacat tttcgggagt cctgtggcgt cgacggatac 3361 ttgggttacg atgtaacccc gttgaaaccg aagcgtatag acggtgacag tccggcatcg 3421 tgccaggctg ttgtagacaa ctctaataac ctttacaaga aaggatactg gaatgcttca 3481 gcagccatgt tcggcctact acctgagcgt cttcgacgcg caactagggt cgtgggtaag 3541 tacgatgctg gatcctcggg tctcatctcg tattgtggag acgatgaacg acaccttggt 3601 aaaaggtgga atactcgcct tcatcggtac gaggtccgag tttggggcgc attgcctcaa 3661 cctcaaagaa accggaggaa tggatacgcg gcgttgctgg atttctttgc cagcaagcac 3721 aatcgaggca tgcctcgggt tgtgtccgaa tacgccgata tccggaaggc tcgaattggc 3781 cttcaatggg taccctctta tactcttggg atgccaccta agggatctca ggacgatcac 3841 tgattatgtg gaaacactca tcgatgaact cgatgagcac ataatcaacc tagcgatgaa 3901 tcctccttgg ttagaggagg gaacaccgcc agaagtcgtc ctttggtcac ctgtcagtgg 3961 aactgaccta gaagaggcgc tcacaaaggg catcgaaatc gctaaccagg cgaaattggt 4021 gaccgttgta tcctagaaat ggagaatacc atgtctaaga aaatcacagc ccgcgggcgt 4081 gaagaagtca agcttatgaa gtccttgatt gctaacttga gaggcagtgg ggttttgacc 4141 ccaacttttg cttatcatgt agcaaattcc tatcgacttg atgtcggtaa ggagttgact 4201 tacagagcat ggcgtcttat cgcacgagag tgtggtcaga gccttctgcg ccgttaatat 4261 ggcgtggtaa agagggagca agg //