LOCUS BK014133 3855 bp RNA linear VRL 09-FEB-2021 DEFINITION TPA_asm: SsRNA phage SRR6253161_3 genomic sequence. ACCESSION BK014133 VERSION BK014133.1 KEYWORDS Third Party Data; TPA; TPA:assembly. SOURCE ssRNA phage SRR6253161_3 ORGANISM ssRNA phage SRR6253161_3 Viruses; Riboviria; Orthornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Nihlwovirus; Nihlwovirus limenecus. REFERENCE 1 (bases 1 to 3855) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Leviviricetes taxonomy JOURNAL Unpublished REFERENCE 2 (bases 1 to 3855) AUTHORS Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. TITLE Direct Submission JOURNAL Submitted (01-SEP-2020) Gut Phageomics, APC Microbiome Ireland, Western Road, Cork T12YT20, Ireland COMMENT THIRD PARTY ANNOTATION DATABASE: This TPA record uses data from DDBJ/EMBL/GenBank entry SRR6253161 ##Assembly-Data-START## Assembly Method :: metaSPAdes v. v3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3855 /organism="ssRNA phage SRR6253161_3" /mol_type="genomic RNA" /isolation_source="activated sludge" /db_xref="taxon:2786490" /country="USA" /note="Viruses; Riboviria; Orthnornavirae; Lenarviricota; Leviviricetes; Timlovirales; Steitzviridae; Nihlwovirus; Nihlwovirus SRR6253161_3" gene <1..1307 /gene="SRR6253161_3_1" CDS <1..1307 /gene="SRR6253161_3_1" /codon_start=3 /product="maturation protein" /protein_id="DAD52534.1" /translation="APRGAGLLSDLSLSILKWEPSMSTFLRNKTRTSSNPSVAGTYHS VFDDSVLSTEYFIRRQGTDYMSDQGGNPRVNNHYVGGGFFRATKPYTIERVPSQTMQL LQAKNGPRYITSVVATEPDRYSFDFTWNGNFNSQIYDADQYGAEAWDRARPAQPSFSL LNSIYELREWPSTTKPRILKYRDTKAWGDYYLAVNFGWIPILSDIRQFTKNLFTFEEQ LKQLLRDEGKPVRRQFKMASHSFSNTEGPVRGTSYGAFQNGMVTGVYAGVPSYEDTLT WSQDVWFSGQFRYHLPGGNRDWRWKKAMYFRIIAGTPSPATVWNAIPWTWLVDYFSNI GHIISNLDDGLAENLAADYAFLMQKKQVIYKRVSTGLFNKFGGGTESASATTRIVSST KERTIVDPFGPSFSGLGSLSGKQLSILGALGMSALPSSRGKY" gene 1376..1726 /gene="SRR6253161_3_2" CDS 1376..1726 /gene="SRR6253161_3_2" /codon_start=1 /product="coat protein" /protein_id="DAD52535.1" /translation="MFGDPQVFNVNAVSTSFARVKVTDTEAVYKDNAGVYTLTQKQNQ TKARFRREVRLGKEAIITDPITGVKSVQSVSVGLFIDEPKYGFTDPEIDILKDAIIAI CDDTRMNRILVGEY" gene 1850..3790 /gene="SRR6253161_3_3" CDS 1850..3790 /gene="SRR6253161_3_3" /codon_start=1 /product="RNA-directed RNA polymerase" /protein_id="DAD52536.1" /translation="MNDRPRFLATLLDELADQLSLSAGLDQKYIWSRYEHEGLSFLTI TLPSFCDGIERALERGSATPDDFPAFARKKNGCLPKFLSGFTSRMFTPCGVLMEHFDP DVLFAVRQITRFMKKAEVPCTKQRTEAAFHKYVLTDMELKDVNEKFRNGHEDSTLRAV ADILVGSLFSDISQQGLRCRHGPGATAERLSSSERSLIRYWPIRAEPWFPSSYHAVPN AGHWKRLRELSLLSEAAEPPVRVVAVPKTLKTPRIIAVEPSHMMYMQQSMMQYMVDRI QTHPLTRGSIRFSDQVHNMRSAQVESLKKNRATIDLSEASDRVSLELVKYIFGGEQIY NYLYACRTSKALLPDGTTLTLEKFCSMGSATCFPIESFVFYCLILAAMHDARSIRPTS QSIRMFSRLVDVYGDDLIVPVQLLSFVIDKLESYGLQVNRGKSFSASYFRESCGGDYY KGYPVKPVYLRVHPTAIDDAFDPNVLASLVQTSNQFYSQGLWKTCFEVRSFVDKKLRE VVKPRRLRKGISAYPRIAYRRNFNIDEDSLVSDRGCFFYSVMHDSYDRWNSKLHRFES FTVTVSPVKEKDSNSPWFEMVTEPREALCPPEKRVNYYTPDQQYIACLFKSMSNIGND NSVDWESSGRPRNLRLRTGWVW" ORIGIN 1 cagcgccgcg aggcgctgga ctgctcagtg atttatcgct gtcaatactc aaatgggaac 61 cttcaatgag cacctttctc aggaacaaga ctaggacttc ttcaaaccct agtgttgcag 121 gtacgtatca ttccgtgttt gacgactcgg tactctctac agagtacttc atccgacgac 181 agggaacgga ctacatgtct gatcaaggtg gcaaccctcg cgttaataat cattacgtgg 241 gtggtggctt tttcagggcc actaaaccat atacgataga acgcgttcca tctcaaacca 301 tgcaattgtt gcaagctaag aatggaccga ggtatattac ttcggtggtt gcgactgaac 361 cagatcgtta ctcttttgat tttacctgga atggtaattt caattcccag atttacgacg 421 ccgatcaata cggcgccgag gcttgggata gagctcgacc tgctcagcca tcattttctc 481 tgttaaactc tatttacgaa ctaagggaat ggccttctac gaccaaacct agaattctaa 541 aatatagaga cacaaaagct tggggtgact actatttagc agtcaacttt ggttggatac 601 cgattttgtc ggatattcgc cagtttacca agaacctttt tacgttcgag gaacaactca 661 agcaattgtt aagagatgaa ggtaagccag tgagacgtca atttaagatg gcatctcatt 721 ccttcagtaa tactgaaggc ccagttagag gcacctctta tggtgctttc cagaatggca 781 tggtcacagg cgtctacgct ggcgtgccct cttatgagga tacgttgacg tggagccaag 841 acgtatggtt ttctggacaa ttccgctacc acctacccgg tggtaaccgt gattggcgat 901 ggaagaaggc aatgtacttt cgtattattg ccggaactcc ctcaccagct acggtgtgga 961 atgctattcc ctggacatgg ctggttgatt acttttccaa cataggtcac ataattagta 1021 accttgatga cggtttggcg gaaaatcttg ccgctgacta tgcttttctt atgcagaaga 1081 agcaggtcat ttacaaacgc gtctccacag gactctttaa caagttcggt ggtggaactg 1141 aatcagcttc cgcgactact cgtatcgttt ccagtactaa ggaacgtaca atcgtggatc 1201 catttggccc ctcgttttct gggttgggca gtttatccgg taagcaacta agtattttag 1261 gtgctttggg tatgtctgct ttgccctctt caaggggaaa gtattgaatt gggcgtggaa 1321 atccttctac gttcattatc tcacgtcgtg agacgtcacg aaaaggaagt ttgtaatgtt 1381 tggtgatcct caagtcttca acgtcaatgc tgtctcgacg agttttgctc gcgtgaaagt 1441 aacagatact gaagctgtct ataaagacaa cgcaggtgtc tatacactta cacaaaagca 1501 gaatcagacg aaggcacgct ttcggcgtga agtccggttg ggcaaggaag cgattattac 1561 ggaccccatc actggggtta aatccgtaca atctgtttcc gtaggcctct ttatcgatga 1621 acccaagtat ggtttcaccg acccggaaat cgacatcttg aaggatgcga ttatagccat 1681 ctgcgatgat acgcggatga ataggatcct ggttggtgag tattaagtct tttgagactt 1741 tactcggcgc ggagtcagtt attgcaacta gcttcgtgat ggtgttatct taacacctcc 1801 aactatacat tacacggttt ccattacctt aacctcgaaa ggattggata tgaatgaccg 1861 accacgcttc ttagcgacgc tgctagatga actagcagat cagctatcac tgagcgctgg 1921 actagaccaa aaatacatat ggtctaggta cgagcatgaa ggattatcgt ttttaacgat 1981 aaccttacct tctttctgtg atgggatcga aagagcccta gaaagagggt ctgctactcc 2041 agacgacttt ccggctttcg ctagaaagaa gaatgggtgt ctcccgaaat ttctatcagg 2101 tttcactagc aggatgttca cgccgtgtgg tgtactcatg gagcactttg atcctgacgt 2161 actgtttgca gttcgtcaaa tcactaggtt tatgaagaaa gccgaagtcc cttgcactaa 2221 gcagaggacc gaagccgcct ttcataaata cgtgctcacc gacatggagc tcaaagatgt 2281 caacgaaaag ttcagaaacg gtcacgagga ttctactctt cgtgctgtcg ctgatattct 2341 tgttgggtca ctttttagtg acatatccca gcaaggactt cgctgtcgtc acggtccagg 2401 cgctaccgca gaaagactta gttcatccga acgtagtctt atacggtatt ggcccatccg 2461 tgcagagccc tggttcccaa gttcttacca tgcggtccca aacgcgggac actggaaaag 2521 gcttagagaa ctgagtctat tgtctgaagc cgcagagcca cccgtgaggg tggttgccgt 2581 gcctaagact ctaaagactc cgcgtattat tgcagtagaa ccttcccaca tgatgtatat 2641 gcaacagtca atgatgcaat acatggtgga tcggatccaa acgcaccctc taacgagggg 2701 gtcaatcaga ttttctgatc aagtccataa tatgcggtcg gcacaagtcg agtctttgaa 2761 gaagaaccgt gctaccatcg atttatccga agccagcgat agggtttccc tagaactggt 2821 caagtatatt ttcggtggtg aacagatata caattatttg tatgcctgcc gcacgtcgaa 2881 ggctctcctt cctgatggaa caactcttac tcttgagaag ttctgttcga tggggtcagc 2941 aacttgcttc ccgatcgagt catttgtgtt ttactgcctt atcttagcag caatgcacga 3001 tgccaggtcc atacggccca ccagtcaatc aattcgcatg ttttcgcggt tggttgacgt 3061 gtatggggac gatttgattg tccctgtaca actgctcagt ttcgtcatcg ataagcttga 3121 gtcttatgga cttcaagtta atagaggcaa aagcttttcg gcttcttatt tccgagaaag 3181 ctgtgggggt gattactaca aaggttatcc ggtcaaaccc gtttacctgc gtgttcaccc 3241 tactgccatc gatgacgcgt tcgatcctaa cgtcttggct tcacttgtcc aaacgagtaa 3301 tcaattttac tcgcaaggct tgtggaaaac ctgttttgaa gttaggagct ttgtagataa 3361 gaagcttcgt gaggttgtta aaccgagaag gctgaggaaa ggcatttctg cttatcctcg 3421 tatagcttat cggcgcaact tcaacattga tgaggactct ttagtctctg atcgtggttg 3481 cttcttctac agcgtgatgc atgactctta tgaccgttgg aattcaaaac tccataggtt 3541 tgagagtttt actgtcaccg tttctcctgt taaggagaag gacagtaatt caccatggtt 3601 tgaaatggtg actgaaccca gggaggcatt atgccctcct gagaagcgtg tgaactatta 3661 cacgccggat cagcaataca tcgcgtgcct ctttaagtcg atgagcaata tcggaaacga 3721 taactcagtc gactgggagt cgagcggtag gccccggaac ctacgattac gaaccgggtg 3781 ggtatggtag tgataccata cgcgggatag ttcccgcaac aggagatgtt aagcgaaagg 3841 tttaaccctt tagca //