N840_0008 SM00852 Probable molybdopterin binding domain N840_0013 SM00271 DnaJ molecular chaperone homology domain N840_0024 SM00904 Riboflavin kinase N840_0031 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain N840_0032 SM00851 MGS-like domain N840_0032 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain N840_0040 SM00893 Electron transfer flavoprotein domain N840_0041 SM00893 Electron transfer flavoprotein domain N840_0050 SM00650 Ribosomal RNA adenine dimethylases N840_0054 SM00271 DnaJ molecular chaperone homology domain N840_0057 SM00487 DEAD-like helicases superfamily N840_0057 SM00490 helicase superfamily c-terminal domain N840_0058 SM00486 DNA polymerase type-B family N840_0059 SM01007 Class II Aldolase and Adducin N-terminal domain N840_0062 SM00342 helix_turn_helix, arabinose operon control protein N840_0064 SM00382 ATPases associated with a variety of cellular activities N840_0073 SM01329 N840_0073 N840_0074 SM00917 LeuA allosteric (dimerisation) domain N840_0079 SM00354 helix_turn _helix lactose operon repressor N840_0093 SM00842 Cell division protein FtsA N840_0094 SM00864 Tubulin/FtsZ family, GTPase domain N840_0094 SM00865 Tubulin/FtsZ family, C-terminal domain N840_0097 SM00957 SecA DEAD-like domain N840_0097 SM00958 SecA preprotein cross-linking domain N840_0102 SM01240 N840_0102 N840_0107 SM00644 N840_0107 N840_0110 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_0110 SM00895 N840_0110 N840_0121 SM00564 beta-propeller repeat N840_0123 SM00947 Carbonic anhydrase N840_0124 SM00382 ATPases associated with a variety of cellular activities N840_0145 SM00487 DEAD-like helicases superfamily N840_0145 SM00490 helicase superfamily c-terminal domain N840_0145 SM00847 Helicase associated domain (HA2) Add an annotation N840_0148 SM00382 ATPases associated with a variety of cellular activities N840_0157 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N840_0158 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N840_0163 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N840_0173 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N840_0175 SM00935 Outer membrane protein (OmpH-like) N840_0181 SM00481 DNA polymerase alpha chain like domain N840_0185 SM00977 TilS substrate C-terminal domain N840_0188 SM01322 N840_0188 N840_0197 SM00382 ATPases associated with a variety of cellular activities N840_0197 SM00930 N840_0197 N840_0209 SM00257 Lysin motif N840_0210 SM00849 Metallo-beta-lactamase superfamily N840_0213 SM00479 N840_0213 N840_0228 SM01321 N840_0228 N840_0242 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase N840_0266 SM00382 ATPases associated with a variety of cellular activities N840_0274 SM01130 N840_0274 N840_0278 SM00346 helix_turn_helix isocitrate lyase regulation N840_0293 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain N840_0294 SM01092 CO dehydrogenase flavoprotein C-terminal domain N840_0303 SM00421 helix_turn_helix, Lux Regulon N840_0317 SM00342 helix_turn_helix, arabinose operon control protein N840_0326 SM00052 Putative diguanylate phosphodiesterase N840_0326 SM00421 helix_turn_helix, Lux Regulon N840_0329 SM00248 ankyrin repeats N840_0335 SM00829 Enoylreductase N840_0340 SM00382 ATPases associated with a variety of cellular activities N840_0348 SM00947 Carbonic anhydrase N840_0349 SM01116 N840_0349 N840_0351 SM01266 N840_0351 N840_0354 SM00354 helix_turn _helix lactose operon repressor N840_0355 SM00346 helix_turn_helix isocitrate lyase regulation N840_0360 SM00859 Semialdehyde dehydrogenase, NAD binding domain N840_0365 SM00829 Enoylreductase N840_0373 SM00062 Bacterial periplasmic substrate-binding proteins N840_0374 SM00382 ATPases associated with a variety of cellular activities N840_0377 SM01004 Delta-aminolevulinic acid dehydratase N840_0389 SM00098 Alkaline phosphatase homologues N840_0391 SM00267 diguanylate cyclase N840_0404 SM00448 cheY-homologous receiver domain N840_0404 SM00862 Transcriptional regulatory protein, C terminal N840_0405 SM00091 PAS domain N840_0405 SM00387 Histidine kinase-like ATPases N840_0405 SM00388 His Kinase A (phosphoacceptor) domain N840_0408 SM00642 Alpha-amylase domain N840_0412 SM01323 N840_0412 N840_0415 SM00507 HNH nucleases N840_0425 SM00861 Transketolase, pyrimidine binding domain N840_0428 SM00981 N840_0428 N840_0443 SM00382 ATPases associated with a variety of cellular activities N840_0443 SM00994 ClpX C4-type zinc finger N840_0443 SM01086 C-terminal, D2-small domain, of ClpB protein N840_0444 SM00382 ATPases associated with a variety of cellular activities N840_0444 SM00464 Found in ATP-dependent protease La (LON) N840_0445 SM00411 bacterial (prokaryotic) histone like domain N840_0447 SM00278 Helix-hairpin-helix DNA-binding motif class 1 N840_0452 SM00344 helix_turn_helix ASNC type N840_0453 SM00382 ATPases associated with a variety of cellular activities N840_0454 SM00382 ATPases associated with a variety of cellular activities N840_0455 SM00938 Nitrogen regulatory protein P-II N840_0462 SM00052 Putative diguanylate phosphodiesterase N840_0464 SM01266 N840_0464 N840_0475 SM00382 ATPases associated with a variety of cellular activities N840_0477 SM00493 N840_0477 N840_0478 SM00387 Histidine kinase-like ATPases N840_0489 SM00530 Helix-turn-helix XRE-family like proteins N840_0493 SM00422 helix_turn_helix, mercury resistance N840_0495 SM00244 prohibitin homologues N840_0496 SM00382 ATPases associated with a variety of cellular activities N840_0499 SM00822 N840_0499 N840_0501 SM00382 ATPases associated with a variety of cellular activities N840_0509 SM00450 Rhodanese Homology Domain N840_0512 SM00346 helix_turn_helix isocitrate lyase regulation N840_0528 SM01001 AIR carboxylase N840_0531 SM00840 N840_0531 N840_0540 SM00421 helix_turn_helix, Lux Regulon N840_0540 SM00448 cheY-homologous receiver domain N840_0550 SM00857 Resolvase, N terminal domain N840_0552 SM00342 helix_turn_helix, arabinose operon control protein N840_0575 SM00342 helix_turn_helix, arabinose operon control protein N840_0578 SM00342 helix_turn_helix, arabinose operon control protein N840_0580 SM00028 Tetratricopeptide repeats N840_0582 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_0582 SM00387 Histidine kinase-like ATPases N840_0582 SM00388 His Kinase A (phosphoacceptor) domain N840_0583 SM00448 cheY-homologous receiver domain N840_0583 SM00862 Transcriptional regulatory protein, C terminal N840_0600 SM00923 MbtH-like protein N840_0601 SM00823 Phosphopantetheine attachment site N840_0601 SM00824 Thioesterase N840_0603 SM00382 ATPases associated with a variety of cellular activities N840_0611 SM00822 N840_0611 N840_0617 SM00470 ParB-like nuclease domain N840_0633 SM00764 Citrate lyase ligase C-terminal domain N840_0634 SM00091 PAS domain N840_0634 SM00387 Histidine kinase-like ATPases N840_0635 SM00448 cheY-homologous receiver domain N840_0638 SM00357 Cold shock protein domain N840_0642 SM00729 Elongator protein 3, MiaB family, Radical SAM N840_0646 SM00936 Penicillin-binding protein 5, C-terminal domain N840_0652 SM00855 Phosphoglycerate mutase family N840_0660 SM00271 DnaJ molecular chaperone homology domain N840_0661 SM00671 Sel1-like repeats. N840_0666 SM00382 ATPases associated with a variety of cellular activities N840_0669 SM00062 Bacterial periplasmic substrate-binding proteins N840_0672 SM00116 Domain in cystathionine beta-synthase and other proteins. N840_0672 SM01091 Transporter associated domain N840_0675 SM00729 Elongator protein 3, MiaB family, Radical SAM N840_0706 SM00448 cheY-homologous receiver domain N840_0706 SM00862 Transcriptional regulatory protein, C terminal N840_0724 SM00796 Allophanate hydrolase subunit 1 N840_0725 SM00797 Allophanate hydrolase subunit 2 N840_0727 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain N840_0727 SM01232 N840_0727 N840_0738 SM00861 Transketolase, pyrimidine binding domain N840_0741 SM00881 CoA binding domain N840_0742 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_0742 SM00866 N840_0742 N840_0744 SM00872 Alpha mannosidase, middle domain N840_0768 SM00855 Phosphoglycerate mutase family N840_0771 SM00382 ATPases associated with a variety of cellular activities N840_0776 SM00382 ATPases associated with a variety of cellular activities N840_0787 SM00487 DEAD-like helicases superfamily N840_0787 SM00490 helicase superfamily c-terminal domain N840_0789 SM00729 Elongator protein 3, MiaB family, Radical SAM N840_0790 SM00852 Probable molybdopterin binding domain N840_0797 SM00155 Phospholipase D. Active site motifs. N840_0802 SM00382 ATPases associated with a variety of cellular activities N840_0805 SM00487 DEAD-like helicases superfamily N840_0805 SM00490 helicase superfamily c-terminal domain N840_0807 SM00487 DEAD-like helicases superfamily N840_0807 SM00488 N840_0807 N840_0807 SM00491 N840_0807 N840_0812 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. N840_0817 SM00382 ATPases associated with a variety of cellular activities N840_0819 SM00062 Bacterial periplasmic substrate-binding proteins N840_0819 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. N840_0825 SM00529 Helix-turn-helix diphteria tox regulatory element N840_0828 SM00382 ATPases associated with a variety of cellular activities N840_0835 SM00852 Probable molybdopterin binding domain N840_0837 SM00382 ATPases associated with a variety of cellular activities N840_0841 SM00052 Putative diguanylate phosphodiesterase N840_0842 SM00267 diguanylate cyclase N840_0843 SM00729 Elongator protein 3, MiaB family, Radical SAM N840_0847 SM00936 Penicillin-binding protein 5, C-terminal domain N840_0848 SM00420 helix_turn_helix, Deoxyribose operon repressor N840_0848 SM01134 N840_0848 N840_0849 SM00014 Acid phosphatase homologues N840_0864 SM00382 ATPases associated with a variety of cellular activities N840_0869 SM00062 Bacterial periplasmic substrate-binding proteins N840_0869 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. N840_0872 SM00062 Bacterial periplasmic substrate-binding proteins N840_0872 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. N840_0873 SM00382 ATPases associated with a variety of cellular activities N840_0876 SM00644 N840_0876 N840_0888 SM00382 ATPases associated with a variety of cellular activities N840_0889 SM00357 Cold shock protein domain N840_0891 SM00382 ATPases associated with a variety of cellular activities N840_0891 SM01086 C-terminal, D2-small domain, of ClpB protein N840_0893 SM00316 Ribosomal protein S1-like RNA-binding domain N840_0895 SM00382 ATPases associated with a variety of cellular activities N840_0896 SM00382 ATPases associated with a variety of cellular activities N840_0898 SM00344 helix_turn_helix ASNC type N840_0899 SM00843 N840_0899 N840_0901 SM00382 ATPases associated with a variety of cellular activities N840_0903 SM00926 Molybdopterin oxidoreductase Fe4S4 domain N840_0920 SM00316 Ribosomal protein S1-like RNA-binding domain N840_0921 SM00411 bacterial (prokaryotic) histone like domain N840_0922 SM00849 Metallo-beta-lactamase superfamily N840_0923 SM00382 ATPases associated with a variety of cellular activities N840_0936 SM00849 Metallo-beta-lactamase superfamily N840_0942 SM00382 ATPases associated with a variety of cellular activities N840_0945 SM00062 Bacterial periplasmic substrate-binding proteins N840_0957 SM00981 N840_0957 N840_0958 SM00382 ATPases associated with a variety of cellular activities N840_0972 SM00851 MGS-like domain N840_0974 SM00881 CoA binding domain N840_0975 SM00992 Hemimethylated DNA-binding protein YccV like N840_0976 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase N840_0992 SM00226 Low molecular weight phosphatase family N840_1000 SM00357 Cold shock protein domain N840_1001 SM00357 Cold shock protein domain N840_1005 SM00073 Histidine Phosphotransfer domain N840_1005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_1005 SM00387 Histidine kinase-like ATPases N840_1005 SM00388 His Kinase A (phosphoacceptor) domain N840_1005 SM00448 cheY-homologous receiver domain N840_1007 SM00448 cheY-homologous receiver domain N840_1007 SM00862 Transcriptional regulatory protein, C terminal N840_1012 SM00271 DnaJ molecular chaperone homology domain N840_1019 SM00903 Flavin reductase like domain N840_1035 SM00028 Tetratricopeptide repeats N840_1036 SM00267 diguanylate cyclase N840_1043 SM00481 DNA polymerase alpha chain like domain N840_1049 SM00421 helix_turn_helix, Lux Regulon N840_1054 SM00506 Appr-1"-p processing enzyme N840_1055 SM00155 Phospholipase D. Active site motifs. N840_1063 SM00450 Rhodanese Homology Domain N840_1064 SM00867 YceI-like domain N840_1080 SM00858 N840_1080 N840_1089 SM00047 Lysozyme subfamily 2 N840_1092 SM00316 Ribosomal protein S1-like RNA-binding domain N840_1094 SM00363 S4 RNA-binding domain N840_1101 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. N840_1102 SM00822 N840_1102 N840_1104 SM00825 Beta-ketoacyl synthase N840_1122 SM00257 Lysin motif N840_1123 SM00487 DEAD-like helicases superfamily N840_1123 SM00490 helicase superfamily c-terminal domain N840_1123 SM00982 N840_1123 N840_1123 SM01058 CarD-like/TRCF domain N840_1126 SM00382 ATPases associated with a variety of cellular activities N840_1135 SM00382 ATPases associated with a variety of cellular activities N840_1137 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. N840_1138 SM00387 Histidine kinase-like ATPases N840_1139 SM00448 cheY-homologous receiver domain N840_1139 SM00862 Transcriptional regulatory protein, C terminal N840_1145 SM01329 N840_1145 N840_1167 SM00857 Resolvase, N terminal domain N840_1168 SM00507 HNH nucleases N840_1172 SM00422 helix_turn_helix, mercury resistance N840_1173 SM00052 Putative diguanylate phosphodiesterase N840_1173 SM01034 Sensors of blue-light using FAD N840_1178 SM00052 Putative diguanylate phosphodiesterase N840_1199 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_1202 SM01005 Alanine racemase, C-terminal domain N840_1203 SM01091 Transporter associated domain N840_1211 SM01120 N840_1211 N840_1213 SM00091 PAS domain N840_1213 SM00382 ATPases associated with a variety of cellular activities N840_1214 SM00869 Autotransporter beta-domain N840_1219 SM01400 N840_1219 N840_1238 SM00421 helix_turn_helix, Lux Regulon N840_1238 SM00448 cheY-homologous receiver domain N840_1239 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_1239 SM00387 Histidine kinase-like ATPases N840_1241 SM00926 Molybdopterin oxidoreductase Fe4S4 domain N840_1252 SM00448 cheY-homologous receiver domain N840_1254 SM00528 Domain in histone-like proteins of HNS family N840_1262 SM00382 ATPases associated with a variety of cellular activities N840_1263 SM00382 ATPases associated with a variety of cellular activities N840_1265 SM00155 Phospholipase D. Active site motifs. N840_1283 SM00481 DNA polymerase alpha chain like domain N840_1286 SM00363 S4 RNA-binding domain N840_1288 SM00822 N840_1288 N840_1291 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain N840_1291 SM00437 Bacterial DNA topoisomerase I DNA-binding domain N840_1291 SM00493 N840_1291 N840_1297 SM00014 Acid phosphatase homologues N840_1299 SM00028 Tetratricopeptide repeats N840_1300 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family N840_1303 SM00420 helix_turn_helix, Deoxyribose operon repressor N840_1303 SM01134 N840_1303 N840_1305 SM00052 Putative diguanylate phosphodiesterase N840_1305 SM00091 PAS domain N840_1305 SM00267 diguanylate cyclase N840_1307 SM00357 Cold shock protein domain N840_1307 SM00955 N840_1307 N840_1311 SM00382 ATPases associated with a variety of cellular activities N840_1312 SM00382 ATPases associated with a variety of cellular activities N840_1318 SM01230 N840_1318 N840_1320 SM00530 Helix-turn-helix XRE-family like proteins N840_1324 SM00382 ATPases associated with a variety of cellular activities N840_1329 SM00450 Rhodanese Homology Domain N840_1330 SM00642 Alpha-amylase domain N840_1341 SM00354 helix_turn _helix lactose operon repressor N840_1344 SM00091 PAS domain N840_1344 SM00382 ATPases associated with a variety of cellular activities N840_1357 SM00100 Cyclic nucleotide-monophosphate binding domain N840_1357 SM00419 helix_turn_helix, cAMP Regulatory protein N840_1364 SM00463 Small MutS-related domain N840_1365 SM00091 PAS domain N840_1365 SM00267 diguanylate cyclase N840_1368 SM00487 DEAD-like helicases superfamily N840_1368 SM00490 helicase superfamily c-terminal domain N840_1391 SM00470 ParB-like nuclease domain N840_1398 SM00857 Resolvase, N terminal domain N840_1404 SM00890 Domain of unknown function N840_1411 SM00342 helix_turn_helix, arabinose operon control protein N840_1438 SM00195 Dual specificity phosphatase, catalytic domain N840_1438 SM00404 Protein tyrosine phosphatase, catalytic domain motif N840_1440 SM00382 ATPases associated with a variety of cellular activities N840_1440 SM00487 DEAD-like helicases superfamily N840_1440 SM00490 helicase superfamily c-terminal domain N840_1440 SM00847 Helicase associated domain (HA2) Add an annotation N840_1450 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N840_1450 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_1450 SM00319 Homologues of the ligand binding domain of Tar N840_1452 SM01150 N840_1452 N840_1463 SM00530 Helix-turn-helix XRE-family like proteins N840_1467 SM00530 Helix-turn-helix XRE-family like proteins N840_1468 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_1470 SM00382 ATPases associated with a variety of cellular activities N840_1479 SM00829 Enoylreductase N840_1480 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_1480 SM00895 N840_1480 N840_1491 SM00903 Flavin reductase like domain N840_1497 SM00926 Molybdopterin oxidoreductase Fe4S4 domain N840_1505 SM00530 Helix-turn-helix XRE-family like proteins N840_1506 SM00829 Enoylreductase N840_1507 SM00919 Malic enzyme, NAD binding domain N840_1507 SM01274 N840_1507 N840_1511 SM00382 ATPases associated with a variety of cellular activities N840_1512 SM00382 ATPases associated with a variety of cellular activities N840_1517 SM00052 Putative diguanylate phosphodiesterase N840_1517 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) N840_1517 SM00091 PAS domain N840_1517 SM00267 diguanylate cyclase N840_1518 SM00267 diguanylate cyclase N840_1524 SM00382 ATPases associated with a variety of cellular activities N840_1527 SM00342 helix_turn_helix, arabinose operon control protein N840_1536 SM00530 Helix-turn-helix XRE-family like proteins N840_1540 SM00382 ATPases associated with a variety of cellular activities N840_1544 SM01133 N840_1544 N840_1549 SM00267 diguanylate cyclase N840_1557 SM00347 helix_turn_helix multiple antibiotic resistance protein N840_1558 SM00342 helix_turn_helix, arabinose operon control protein N840_1564 SM00267 diguanylate cyclase N840_1569 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_1569 SM00895 N840_1569 N840_1574 SM00857 Resolvase, N terminal domain N840_1582 SM00357 Cold shock protein domain N840_1588 SM00357 Cold shock protein domain N840_1589 SM00357 Cold shock protein domain N840_1591 SM00507 HNH nucleases N840_1601 SM00530 Helix-turn-helix XRE-family like proteins N840_1612 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain N840_1618 SM00926 Molybdopterin oxidoreductase Fe4S4 domain N840_1619 SM00926 Molybdopterin oxidoreductase Fe4S4 domain N840_1635 SM01002 Alanine dehydrogenase/PNT, C-terminal domain N840_1635 SM01003 Alanine dehydrogenase/PNT, N-terminal domain N840_1640 SM00448 cheY-homologous receiver domain N840_1640 SM00862 Transcriptional regulatory protein, C terminal N840_1641 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_1641 SM00387 Histidine kinase-like ATPases N840_1641 SM00388 His Kinase A (phosphoacceptor) domain N840_1652 SM00354 helix_turn _helix lactose operon repressor N840_1664 SM00900 N840_1664 N840_1666 SM00478 endonuclease III N840_1666 SM00525 N840_1666 N840_1670 SM00363 S4 RNA-binding domain N840_1675 SM00347 helix_turn_helix multiple antibiotic resistance protein N840_1685 SM00479 N840_1685 N840_1686 SM00382 ATPases associated with a variety of cellular activities N840_1686 SM00487 DEAD-like helicases superfamily N840_1686 SM00490 helicase superfamily c-terminal domain N840_1692 SM00354 helix_turn _helix lactose operon repressor N840_1707 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain N840_1716 SM00382 ATPases associated with a variety of cellular activities N840_1730 SM00882 Coenzyme A transferase N840_1732 SM00342 helix_turn_helix, arabinose operon control protein N840_1733 SM00893 Electron transfer flavoprotein domain N840_1734 SM00893 Electron transfer flavoprotein domain N840_1745 SM00382 ATPases associated with a variety of cellular activities N840_1748 SM00411 bacterial (prokaryotic) histone like domain N840_1749 SM00873 B3/4 domain N840_1749 SM00874 tRNA synthetase B5 domain N840_1749 SM00896 Ferredoxin-fold anticodon binding domain N840_1755 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain N840_1768 SM01060 N840_1768 N840_1771 SM00342 helix_turn_helix, arabinose operon control protein N840_1777 SM00465 GIY-YIG type nucleases (URI domain) N840_1792 SM00382 ATPases associated with a variety of cellular activities N840_1793 SM00450 Rhodanese Homology Domain N840_1797 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase N840_1799 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain N840_1799 SM00437 Bacterial DNA topoisomerase I DNA-binding domain N840_1799 SM00493 N840_1799 N840_1803 SM00870 N840_1803 N840_1806 SM00420 helix_turn_helix, Deoxyribose operon repressor N840_1806 SM01134 N840_1806 N840_1810 SM00829 Enoylreductase N840_1815 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N840_1819 SM00763 PrkA AAA domain N840_1821 SM00267 diguanylate cyclase N840_1822 SM00267 diguanylate cyclase N840_1830 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N840_1830 SM00267 diguanylate cyclase N840_1838 SM01329 N840_1838 N840_1842 SM00341 Helicase and RNase D C-terminal N840_1842 SM00474 3'-5' exonuclease N840_1846 SM00487 DEAD-like helicases superfamily N840_1846 SM00491 N840_1846 N840_1853 SM00052 Putative diguanylate phosphodiesterase N840_1854 SM01091 Transporter associated domain N840_1861 SM00357 Cold shock protein domain N840_1866 SM00346 helix_turn_helix isocitrate lyase regulation N840_1869 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N840_1869 SM00245 tail specific protease N840_1870 SM00945 ProQ/FINO family N840_1871 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N840_1885 SM00479 N840_1885 N840_1897 SM00257 Lysin motif N840_1899 SM00382 ATPases associated with a variety of cellular activities N840_1901 SM00382 ATPases associated with a variety of cellular activities N840_1902 SM00278 Helix-hairpin-helix DNA-binding motif class 1 N840_1918 SM00836 DALR anticodon binding domain N840_1918 SM01016 Arginyl tRNA synthetase N terminal dom N840_1924 SM00448 cheY-homologous receiver domain N840_1925 SM00448 cheY-homologous receiver domain N840_1926 SM00138 Methyltransferase, chemotaxis proteins N840_1927 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N840_1927 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_1927 SM00319 Homologues of the ligand binding domain of Tar N840_1928 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N840_1928 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_1928 SM00319 Homologues of the ligand binding domain of Tar N840_1929 SM00260 Two component signalling adaptor domain N840_1930 SM00073 Histidine Phosphotransfer domain N840_1930 SM00260 Two component signalling adaptor domain N840_1930 SM00387 Histidine kinase-like ATPases N840_1930 SM01231 N840_1930 N840_1939 SM00382 ATPases associated with a variety of cellular activities N840_1953 SM00278 Helix-hairpin-helix DNA-binding motif class 1 N840_1953 SM00465 GIY-YIG type nucleases (URI domain) N840_1954 SM00421 helix_turn_helix, Lux Regulon N840_1954 SM00448 cheY-homologous receiver domain N840_1956 SM00421 helix_turn_helix, Lux Regulon N840_1957 SM00382 ATPases associated with a variety of cellular activities N840_1960 SM00062 Bacterial periplasmic substrate-binding proteins N840_1960 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. N840_1967 SM00642 Alpha-amylase domain N840_1979 SM00382 ATPases associated with a variety of cellular activities N840_1989 SM00421 helix_turn_helix, Lux Regulon N840_1994 SM00267 diguanylate cyclase N840_2000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N840_2005 SM00387 Histidine kinase-like ATPases N840_2005 SM00388 His Kinase A (phosphoacceptor) domain N840_2006 SM00448 cheY-homologous receiver domain N840_2006 SM00862 Transcriptional regulatory protein, C terminal N840_2007 SM00095 Transthyretin N840_2015 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins N840_2015 SM00634 Bacterial Ig-like domain (group 1) N840_2039 SM00869 Autotransporter beta-domain N840_2050 SM00871 Bacterial transcription activator, effector binding domain N840_2051 SM00936 Penicillin-binding protein 5, C-terminal domain N840_2052 SM00479 N840_2052 N840_2071 SM00984 UDP binding domain N840_2072 SM01350 N840_2072 N840_2104 SM00226 Low molecular weight phosphatase family N840_2106 SM00116 Domain in cystathionine beta-synthase and other proteins. N840_2106 SM01091 Transporter associated domain N840_2110 SM00052 Putative diguanylate phosphodiesterase N840_2110 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) N840_2110 SM00091 PAS domain N840_2110 SM00267 diguanylate cyclase N840_2111 SM00478 endonuclease III N840_2111 SM01009 AlkA N-terminal domain N840_2116 SM00327 von Willebrand factor (vWF) type A domain N840_2125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_2125 SM00387 Histidine kinase-like ATPases N840_2125 SM00388 His Kinase A (phosphoacceptor) domain N840_2126 SM00448 cheY-homologous receiver domain N840_2126 SM00862 Transcriptional regulatory protein, C terminal N840_2133 SM00046 Diacylglycerol kinase catalytic domain (presumed) N840_2137 SM00829 Enoylreductase N840_2143 SM01133 N840_2143 N840_2147 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_2147 SM00866 N840_2147 N840_2148 SM00641 Glycosyl hydrolases family 25 N840_2164 SM00382 ATPases associated with a variety of cellular activities N840_2166 SM00327 von Willebrand factor (vWF) type A domain N840_2170 SM00448 cheY-homologous receiver domain N840_2170 SM00850 LytTr DNA-binding domain N840_2172 SM00422 helix_turn_helix, mercury resistance N840_2175 SM00382 ATPases associated with a variety of cellular activities N840_2178 SM01217 N840_2178 N840_2195 SM00382 ATPases associated with a variety of cellular activities N840_2205 SM00518 AP endonuclease family 2 N840_2209 SM00100 Cyclic nucleotide-monophosphate binding domain N840_2218 SM00841 Elongation factor P, C-terminal N840_2218 SM01185 N840_2218 N840_2220 SM00833 Cobalamin synthesis protein cobW C-terminal domain N840_2221 SM00014 Acid phosphatase homologues N840_2223 SM00052 Putative diguanylate phosphodiesterase N840_2227 SM00382 ATPases associated with a variety of cellular activities N840_2230 SM00363 S4 RNA-binding domain N840_2231 SM00487 DEAD-like helicases superfamily N840_2231 SM00490 helicase superfamily c-terminal domain N840_2239 SM00421 helix_turn_helix, Lux Regulon N840_2239 SM00448 cheY-homologous receiver domain N840_2247 SM00382 ATPases associated with a variety of cellular activities N840_2252 SM00926 Molybdopterin oxidoreductase Fe4S4 domain N840_2258 SM00382 ATPases associated with a variety of cellular activities N840_2260 SM00342 helix_turn_helix, arabinose operon control protein N840_2264 SM00387 Histidine kinase-like ATPases N840_2265 SM00421 helix_turn_helix, Lux Regulon N840_2265 SM00448 cheY-homologous receiver domain N840_2266 SM00387 Histidine kinase-like ATPases N840_2266 SM00388 His Kinase A (phosphoacceptor) domain N840_2266 SM00448 cheY-homologous receiver domain N840_2267 SM00091 PAS domain N840_2267 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_2267 SM00387 Histidine kinase-like ATPases N840_2267 SM00388 His Kinase A (phosphoacceptor) domain N840_2268 SM00382 ATPases associated with a variety of cellular activities N840_2268 SM00448 cheY-homologous receiver domain N840_2269 SM00882 Coenzyme A transferase N840_2270 SM00882 Coenzyme A transferase N840_2278 SM00434 DNA Topoisomerase IV N840_2280 SM00869 Autotransporter beta-domain N840_2295 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain N840_2296 SM00346 helix_turn_helix isocitrate lyase regulation N840_2297 SM00852 Probable molybdopterin binding domain N840_2310 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain N840_2317 SM00849 Metallo-beta-lactamase superfamily N840_2319 SM00327 von Willebrand factor (vWF) type A domain N840_2332 SM00926 Molybdopterin oxidoreductase Fe4S4 domain N840_2332 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region N840_2333 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region N840_2340 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N840_2352 SM00905 Dihydroneopterin aldolase N840_2355 SM00382 ATPases associated with a variety of cellular activities N840_2358 SM00062 Bacterial periplasmic substrate-binding proteins N840_2359 SM00062 Bacterial periplasmic substrate-binding proteins N840_2368 SM00859 Semialdehyde dehydrogenase, NAD binding domain N840_2372 SM00825 Beta-ketoacyl synthase N840_2380 SM00463 Small MutS-related domain N840_2420 SM00421 helix_turn_helix, Lux Regulon N840_2420 SM00448 cheY-homologous receiver domain N840_2432 SM00387 Histidine kinase-like ATPases N840_2433 SM00448 cheY-homologous receiver domain N840_2433 SM00850 LytTr DNA-binding domain N840_2434 SM00342 helix_turn_helix, arabinose operon control protein N840_2446 SM00052 Putative diguanylate phosphodiesterase N840_2446 SM00267 diguanylate cyclase N840_2463 SM00278 Helix-hairpin-helix DNA-binding motif class 1 N840_2463 SM00292 breast cancer carboxy-terminal domain N840_2463 SM00532 Ligase N family N840_2464 SM00771 ZipA, C-terminal domain (FtsZ-binding) N840_2472 SM00773 Proposed nucleic acid binding domain N840_2474 SM00382 ATPases associated with a variety of cellular activities N840_2478 SM00822 N840_2478 N840_2487 SM00646 N840_2487 N840_2489 SM00342 helix_turn_helix, arabinose operon control protein N840_2490 SM00877 N840_2490 N840_2491 SM00877 N840_2491 N840_2509 SM00877 N840_2509 N840_2514 SM00877 N840_2514 N840_2515 SM00919 Malic enzyme, NAD binding domain N840_2515 SM01274 N840_2515 N840_2517 SM00861 Transketolase, pyrimidine binding domain N840_2521 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_2521 SM00387 Histidine kinase-like ATPases N840_2532 SM01130 N840_2532 N840_2545 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N840_2545 SM00382 ATPases associated with a variety of cellular activities N840_2557 SM00052 Putative diguanylate phosphodiesterase N840_2557 SM00267 diguanylate cyclase N840_2562 SM00116 Domain in cystathionine beta-synthase and other proteins. N840_2562 SM01240 N840_2562 N840_2566 SM00564 beta-propeller repeat N840_2570 SM00530 Helix-turn-helix XRE-family like proteins N840_2572 SM00562 N840_2572 N840_2574 SM01359 N840_2574 N840_2574 SM01360 N840_2574 N840_2575 SM00450 Rhodanese Homology Domain N840_2582 SM00271 DnaJ molecular chaperone homology domain N840_2601 SM00829 Enoylreductase N840_2603 SM00382 ATPases associated with a variety of cellular activities N840_2605 SM00028 Tetratricopeptide repeats N840_2609 SM00938 Nitrogen regulatory protein P-II N840_2610 SM00382 ATPases associated with a variety of cellular activities N840_2610 SM00448 cheY-homologous receiver domain N840_2612 SM00387 Histidine kinase-like ATPases N840_2612 SM00388 His Kinase A (phosphoacceptor) domain N840_2614 SM01211 N840_2614 N840_2615 SM00062 Bacterial periplasmic substrate-binding proteins N840_2626 SM00358 Double-stranded RNA binding motif N840_2626 SM00535 Ribonuclease III family N840_2635 SM00487 DEAD-like helicases superfamily N840_2635 SM00490 helicase superfamily c-terminal domain N840_2639 SM00986 Uracil DNA glycosylase superfamily N840_2639 SM00987 UreE urease accessory protein, C-terminal domain N840_2640 SM00967 RNA 2'-O ribose methyltransferase substrate binding N840_2642 SM01144 N840_2642 N840_2643 SM00881 CoA binding domain N840_2644 SM00155 Phospholipase D. Active site motifs. N840_2651 SM00382 ATPases associated with a variety of cellular activities N840_2651 SM01086 C-terminal, D2-small domain, of ClpB protein N840_2654 SM00363 S4 RNA-binding domain N840_2658 SM00830 Chorismate mutase type II N840_2659 SM00830 Chorismate mutase type II N840_2663 SM00267 diguanylate cyclase N840_2669 SM00382 ATPases associated with a variety of cellular activities N840_2669 SM00962 SRP54-type protein, GTPase domain N840_2669 SM00963 SRP54-type protein, helical bundle domain N840_2671 SM01091 Transporter associated domain N840_2685 SM00487 DEAD-like helicases superfamily N840_2685 SM00490 helicase superfamily c-terminal domain N840_2706 SM00869 Autotransporter beta-domain N840_2716 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_2716 SM00895 N840_2716 N840_2717 SM00257 Lysin motif N840_2717 SM00749 bacterial OsmY and nodulation domain N840_2719 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor N840_2720 SM00450 Rhodanese Homology Domain N840_2721 SM00528 Domain in histone-like proteins of HNS family N840_2729 SM00382 ATPases associated with a variety of cellular activities N840_2735 SM00347 helix_turn_helix multiple antibiotic resistance protein N840_2749 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain N840_2751 SM00382 ATPases associated with a variety of cellular activities N840_2759 SM00420 helix_turn_helix, Deoxyribose operon repressor N840_2759 SM01134 N840_2759 N840_2761 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N840_2761 SM00382 ATPases associated with a variety of cellular activities N840_2762 SM00849 Metallo-beta-lactamase superfamily N840_2766 SM00354 helix_turn _helix lactose operon repressor N840_2783 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N840_2783 SM00382 ATPases associated with a variety of cellular activities N840_2787 SM00420 helix_turn_helix, Deoxyribose operon repressor N840_2787 SM01134 N840_2787 N840_2790 SM01007 Class II Aldolase and Adducin N-terminal domain N840_2794 SM00257 Lysin motif N840_2808 SM01101 N840_2808 N840_2813 SM00487 DEAD-like helicases superfamily N840_2813 SM00490 helicase superfamily c-terminal domain N840_2823 SM00893 Electron transfer flavoprotein domain N840_2832 SM01192 N840_2832 N840_2832 SM01193 N840_2832 N840_2836 SM00966 SpoVT / AbrB like domain N840_2837 SM00954 Region found in RelA / SpoT proteins N840_2839 SM00073 Histidine Phosphotransfer domain N840_2839 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_2839 SM00387 Histidine kinase-like ATPases N840_2839 SM00388 His Kinase A (phosphoacceptor) domain N840_2839 SM00448 cheY-homologous receiver domain N840_2840 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain N840_2841 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain N840_2852 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs N840_2852 SM00475 5'-3' exonuclease N840_2854 SM01007 Class II Aldolase and Adducin N-terminal domain N840_2859 SM00420 helix_turn_helix, Deoxyribose operon repressor N840_2859 SM01134 N840_2859 N840_2868 SM00925 MltA specific insert domain N840_2872 SM00646 N840_2872 N840_2874 SM00382 ATPases associated with a variety of cellular activities N840_2884 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N840_2886 SM00927 DNA mismatch repair enzyme MutH N840_2891 SM00563 Phosphate acyltransferases N840_2894 SM00354 helix_turn _helix lactose operon repressor N840_2904 SM00862 Transcriptional regulatory protein, C terminal N840_2910 SM00028 Tetratricopeptide repeats N840_2910 SM00862 Transcriptional regulatory protein, C terminal N840_2920 SM00257 Lysin motif N840_2921 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain N840_2922 SM01092 CO dehydrogenase flavoprotein C-terminal domain N840_2924 SM00091 PAS domain N840_2924 SM00382 ATPases associated with a variety of cellular activities N840_2935 SM01092 CO dehydrogenase flavoprotein C-terminal domain N840_2936 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain N840_2955 SM01022 N840_2955 N840_2963 SM01011 Aminopeptidase P, N-terminal domain N840_2984 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N840_2991 SM00861 Transketolase, pyrimidine binding domain N840_2999 SM00731 SprT homologues. N840_3004 SM00732 Likely ribonuclease with RNase H fold. N840_3005 SM00382 ATPases associated with a variety of cellular activities N840_3008 SM01152 N840_3008 N840_3010 SM00729 Elongator protein 3, MiaB family, Radical SAM N840_3012 SM00870 N840_3012 N840_3016 SM00478 endonuclease III N840_3016 SM00525 N840_3016 N840_3028 SM01276 N840_3028 N840_3035 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_3035 SM00895 N840_3035 N840_3062 SM00342 helix_turn_helix, arabinose operon control protein N840_3067 SM00729 Elongator protein 3, MiaB family, Radical SAM N840_3069 SM00563 Phosphate acyltransferases N840_3070 SM00434 DNA Topoisomerase IV N840_3072 SM00530 Helix-turn-helix XRE-family like proteins N840_3074 SM00871 Bacterial transcription activator, effector binding domain N840_3076 SM00448 cheY-homologous receiver domain N840_3076 SM00862 Transcriptional regulatory protein, C terminal N840_3077 SM00387 Histidine kinase-like ATPases N840_3077 SM00388 His Kinase A (phosphoacceptor) domain N840_3081 SM00387 Histidine kinase-like ATPases N840_3081 SM00433 TopoisomeraseII N840_3100 SM00244 prohibitin homologues N840_3107 SM01118 N840_3107 N840_3108 SM00287 Bacterial SH3 domain homologues N840_3111 SM00905 Dihydroneopterin aldolase N840_3112 SM01207 N840_3112 N840_3119 SM00400 zinc finger N840_3119 SM00493 N840_3119 N840_3119 SM00766 DNA primase DnaG DnaB-binding N840_3125 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) N840_3125 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N840_3128 SM00354 helix_turn _helix lactose operon repressor N840_3129 SM01038 Beta galactosidase small chain N840_3135 SM00530 Helix-turn-helix XRE-family like proteins N840_3144 SM00858 N840_3144 N840_3147 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_3147 SM00895 N840_3147 N840_3178 SM00858 N840_3178 N840_3181 SM00420 helix_turn_helix, Deoxyribose operon repressor N840_3181 SM01134 N840_3181 N840_3200 SM00749 bacterial OsmY and nodulation domain N840_3202 SM00859 Semialdehyde dehydrogenase, NAD binding domain N840_3205 SM00465 GIY-YIG type nucleases (URI domain) N840_3212 SM00487 DEAD-like helicases superfamily N840_3212 SM00490 helicase superfamily c-terminal domain N840_3214 SM00028 Tetratricopeptide repeats N840_3215 SM00316 Ribosomal protein S1-like RNA-binding domain N840_3215 SM00322 K homology RNA-binding domain N840_3217 SM01387 N840_3217 N840_3221 SM00316 Ribosomal protein S1-like RNA-binding domain N840_3230 SM00382 ATPases associated with a variety of cellular activities N840_3232 SM01103 N840_3232 N840_3247 SM00382 ATPases associated with a variety of cellular activities N840_3253 SM00382 ATPases associated with a variety of cellular activities N840_3263 SM00073 Histidine Phosphotransfer domain N840_3263 SM00091 PAS domain N840_3263 SM00387 Histidine kinase-like ATPases N840_3263 SM00388 His Kinase A (phosphoacceptor) domain N840_3263 SM00448 cheY-homologous receiver domain N840_3264 SM00729 Elongator protein 3, MiaB family, Radical SAM N840_3278 SM01130 N840_3278 N840_3279 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_3279 SM00895 N840_3279 N840_3287 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N840_3288 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N840_3299 SM00316 Ribosomal protein S1-like RNA-binding domain N840_3304 SM00052 Putative diguanylate phosphodiesterase N840_3304 SM00267 diguanylate cyclase N840_3305 SM00829 Enoylreductase N840_3309 SM00878 Biotin carboxylase C-terminal domain N840_3324 SM00382 ATPases associated with a variety of cellular activities N840_3345 SM00422 helix_turn_helix, mercury resistance N840_3348 SM00662 RNA polymerases D N840_3349 SM00363 S4 RNA-binding domain N840_3349 SM01390 N840_3349 N840_3362 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. N840_3363 SM01374 N840_3363 N840_3367 SM00322 K homology RNA-binding domain N840_3370 SM01382 N840_3370 N840_3370 SM01383 N840_3370 N840_3374 SM01403 N840_3374 N840_3379 SM00382 ATPases associated with a variety of cellular activities N840_3391 SM00495 Chitin-binding domain type 3 N840_3393 SM00838 Elongation factor G C-terminus N840_3393 SM00889 Elongation factor G, domain IV N840_3406 SM00382 ATPases associated with a variety of cellular activities N840_3411 SM00100 Cyclic nucleotide-monophosphate binding domain N840_3411 SM00419 helix_turn_helix, cAMP Regulatory protein N840_3428 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_3428 SM00866 N840_3428 N840_3444 SM00965 Secretin and TonB N terminus short domain N840_3453 SM00363 S4 RNA-binding domain N840_3457 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_3457 SM00387 Histidine kinase-like ATPases N840_3457 SM00388 His Kinase A (phosphoacceptor) domain N840_3458 SM00448 cheY-homologous receiver domain N840_3458 SM00862 Transcriptional regulatory protein, C terminal N840_3460 SM00316 Ribosomal protein S1-like RNA-binding domain N840_3460 SM00732 Likely ribonuclease with RNase H fold. N840_3461 SM00899 N840_3461 N840_3471 SM00421 helix_turn_helix, Lux Regulon N840_3474 SM00382 ATPases associated with a variety of cellular activities N840_3475 SM00420 helix_turn_helix, Deoxyribose operon repressor N840_3475 SM01134 N840_3475 N840_3477 SM00450 Rhodanese Homology Domain N840_3483 SM00642 Alpha-amylase domain N840_3484 SM00642 Alpha-amylase domain N840_3485 SM00859 Semialdehyde dehydrogenase, NAD binding domain N840_3489 SM00354 helix_turn _helix lactose operon repressor N840_3503 SM00382 ATPases associated with a variety of cellular activities N840_3507 SM00382 ATPases associated with a variety of cellular activities N840_3508 SM00382 ATPases associated with a variety of cellular activities N840_3516 SM00382 ATPases associated with a variety of cellular activities N840_3517 SM00382 ATPases associated with a variety of cellular activities N840_3517 SM00962 SRP54-type protein, GTPase domain N840_3517 SM00963 SRP54-type protein, helical bundle domain N840_3532 SM00382 ATPases associated with a variety of cellular activities N840_3533 SM00382 ATPases associated with a variety of cellular activities N840_3540 SM00382 ATPases associated with a variety of cellular activities N840_3555 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor N840_3561 SM00421 helix_turn_helix, Lux Regulon N840_3570 SM00342 helix_turn_helix, arabinose operon control protein N840_3572 SM00342 helix_turn_helix, arabinose operon control protein N840_3574 SM01235 N840_3574 N840_3576 SM00421 helix_turn_helix, Lux Regulon N840_3581 SM00052 Putative diguanylate phosphodiesterase N840_3585 SM00052 Putative diguanylate phosphodiesterase N840_3585 SM00267 diguanylate cyclase N840_3586 SM00028 Tetratricopeptide repeats N840_3598 SM00382 ATPases associated with a variety of cellular activities N840_3599 SM00382 ATPases associated with a variety of cellular activities N840_3613 SM00530 Helix-turn-helix XRE-family like proteins N840_3614 SM00357 Cold shock protein domain N840_3629 SM00382 ATPases associated with a variety of cellular activities N840_3631 SM00342 helix_turn_helix, arabinose operon control protein N840_3632 SM00047 Lysozyme subfamily 2 N840_3633 SM00642 Alpha-amylase domain N840_3636 SM00346 helix_turn_helix isocitrate lyase regulation N840_3643 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family N840_3645 SM01007 Class II Aldolase and Adducin N-terminal domain N840_3673 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_3673 SM00895 N840_3673 N840_3676 SM00971 Serine acetyltransferase, N-terminal N840_3680 SM00450 Rhodanese Homology Domain N840_3685 SM00829 Enoylreductase N840_3704 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain N840_3704 SM01232 N840_3704 N840_3716 SM00532 Ligase N family N840_3717 SM00072 Guanylate kinase homologues. N840_3718 SM01409 N840_3718 N840_3719 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N840_3719 SM00954 Region found in RelA / SpoT proteins N840_3721 SM00487 DEAD-like helicases superfamily N840_3721 SM00490 helicase superfamily c-terminal domain N840_3739 SM00387 Histidine kinase-like ATPases N840_3740 SM00421 helix_turn_helix, Lux Regulon N840_3740 SM00448 cheY-homologous receiver domain N840_3753 SM00342 helix_turn_helix, arabinose operon control protein N840_3756 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_3756 SM00866 N840_3756 N840_3764 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain N840_3767 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_3767 SM00895 N840_3767 N840_3771 SM00387 Histidine kinase-like ATPases N840_3771 SM00433 TopoisomeraseII N840_3773 SM00480 DNA polymerase III beta subunit N840_3774 SM00382 ATPases associated with a variety of cellular activities N840_3774 SM00760 Bacterial dnaA protein helix-turn-helix domain N840_3777 SM01234 N840_3777 N840_3796 SM01061 CAT RNA binding domain N840_3798 SM00382 ATPases associated with a variety of cellular activities N840_3805 SM00382 ATPases associated with a variety of cellular activities N840_3814 SM01228 N840_3814 N840_3816 SM00344 helix_turn_helix ASNC type N840_3818 SM00327 von Willebrand factor (vWF) type A domain N840_3819 SM00382 ATPases associated with a variety of cellular activities N840_3822 SM00382 ATPases associated with a variety of cellular activities N840_3826 SM00354 helix_turn _helix lactose operon repressor N840_3828 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_3828 SM00895 N840_3828 N840_3837 SM00382 ATPases associated with a variety of cellular activities N840_3851 SM00487 DEAD-like helicases superfamily N840_3851 SM00490 helicase superfamily c-terminal domain N840_3853 SM00357 Cold shock protein domain N840_3853 SM00382 ATPases associated with a variety of cellular activities N840_3853 SM00959 Rho termination factor, N-terminal domain N840_3857 SM00984 UDP binding domain N840_3879 SM01219 N840_3879 N840_3893 SM00341 Helicase and RNase D C-terminal N840_3893 SM00487 DEAD-like helicases superfamily N840_3893 SM00490 helicase superfamily c-terminal domain N840_3893 SM00956 N840_3893 N840_3912 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. N840_3932 SM00563 Phosphate acyltransferases N840_3933 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs N840_3933 SM00474 3'-5' exonuclease N840_3933 SM00475 5'-3' exonuclease N840_3933 SM00482 DNA polymerase A domain N840_3938 SM00729 Elongator protein 3, MiaB family, Radical SAM N840_3940 SM00382 ATPases associated with a variety of cellular activities N840_3940 SM00448 cheY-homologous receiver domain N840_3941 SM00091 PAS domain N840_3941 SM00387 Histidine kinase-like ATPases N840_3941 SM00388 His Kinase A (phosphoacceptor) domain N840_3942 SM01230 N840_3942 N840_3944 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_3944 SM00866 N840_3944 N840_3953 SM01133 N840_3953 N840_3956 SM00420 helix_turn_helix, Deoxyribose operon repressor N840_3956 SM01134 N840_3956 N840_3974 SM01007 Class II Aldolase and Adducin N-terminal domain N840_3977 SM00342 helix_turn_helix, arabinose operon control protein N840_3978 SM00342 helix_turn_helix, arabinose operon control protein N840_3983 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_3983 SM00387 Histidine kinase-like ATPases N840_3983 SM00388 His Kinase A (phosphoacceptor) domain N840_3984 SM00448 cheY-homologous receiver domain N840_3984 SM00862 Transcriptional regulatory protein, C terminal N840_4002 SM00382 ATPases associated with a variety of cellular activities N840_4002 SM01086 C-terminal, D2-small domain, of ClpB protein N840_4005 SM00354 helix_turn _helix lactose operon repressor N840_4006 SM00487 DEAD-like helicases superfamily N840_4006 SM00490 helicase superfamily c-terminal domain N840_4024 SM00342 helix_turn_helix, arabinose operon control protein N840_4028 SM00859 Semialdehyde dehydrogenase, NAD binding domain N840_4052 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. N840_4052 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. N840_4053 SM00649 Ribosomal protein L11/L12 N840_4058 SM00663 RNA polymerase I subunit A N-terminus N840_4061 SM00876 Biotin and Thiamin Synthesis associated domain N840_4072 SM00411 bacterial (prokaryotic) histone like domain N840_4075 SM00387 Histidine kinase-like ATPases N840_4075 SM00388 His Kinase A (phosphoacceptor) domain N840_4076 SM00382 ATPases associated with a variety of cellular activities N840_4076 SM00448 cheY-homologous receiver domain N840_4077 SM01209 N840_4077 N840_4077 SM01210 N840_4077 N840_4078 SM00798 AICARFT/IMPCHase bienzyme N840_4078 SM00851 MGS-like domain N840_4089 SM00248 ankyrin repeats N840_4090 SM00346 helix_turn_helix isocitrate lyase regulation N840_4091 SM01018 B12 binding domain N840_4094 SM00363 S4 RNA-binding domain N840_4108 SM00382 ATPases associated with a variety of cellular activities N840_4114 SM00563 Phosphate acyltransferases N840_4124 SM00829 Enoylreductase N840_4125 SM00382 ATPases associated with a variety of cellular activities N840_4126 SM01005 Alanine racemase, C-terminal domain N840_4135 SM00052 Putative diguanylate phosphodiesterase N840_4136 SM00342 helix_turn_helix, arabinose operon control protein N840_4137 SM00422 helix_turn_helix, mercury resistance N840_4151 SM00028 Tetratricopeptide repeats N840_4153 SM00671 Sel1-like repeats. N840_4159 SM00849 Metallo-beta-lactamase superfamily N840_4163 SM00382 ATPases associated with a variety of cellular activities N840_4170 SM00072 Guanylate kinase homologues. N840_4172 SM00382 ATPases associated with a variety of cellular activities N840_4173 SM00382 ATPases associated with a variety of cellular activities N840_4178 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_4178 SM00866 N840_4178 N840_4181 SM00382 ATPases associated with a variety of cellular activities N840_4188 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_4188 SM00387 Histidine kinase-like ATPases N840_4188 SM00388 His Kinase A (phosphoacceptor) domain N840_4189 SM00448 cheY-homologous receiver domain N840_4189 SM00862 Transcriptional regulatory protein, C terminal N840_4192 SM00342 helix_turn_helix, arabinose operon control protein N840_4194 SM00342 helix_turn_helix, arabinose operon control protein N840_4200 SM00448 cheY-homologous receiver domain N840_4201 SM00091 PAS domain N840_4201 SM00387 Histidine kinase-like ATPases N840_4210 SM00862 Transcriptional regulatory protein, C terminal N840_4220 SM00883 Chaperonin 10 Kd subunit N840_4225 SM00841 Elongation factor P, C-terminal N840_4225 SM01185 N840_4225 N840_4242 SM00479 N840_4242 N840_4250 SM00646 N840_4250 N840_4251 SM00853 MutL C terminal dimerisation domain N840_4251 SM01340 N840_4251 N840_4255 SM00244 prohibitin homologues N840_4256 SM00244 prohibitin homologues N840_4258 SM00788 Adenylosuccinate synthetase N840_4260 SM00316 Ribosomal protein S1-like RNA-binding domain N840_4260 SM00357 Cold shock protein domain N840_4260 SM00955 N840_4260 N840_4261 SM00967 RNA 2'-O ribose methyltransferase substrate binding N840_4272 SM00420 helix_turn_helix, Deoxyribose operon repressor N840_4272 SM01134 N840_4272 N840_4277 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family N840_4279 SM01007 Class II Aldolase and Adducin N-terminal domain N840_4299 SM01091 Transporter associated domain N840_4304 SM00966 SpoVT / AbrB like domain N840_4308 SM00382 ATPases associated with a variety of cellular activities N840_4318 SM00642 Alpha-amylase domain N840_4320 SM00354 helix_turn _helix lactose operon repressor N840_4322 SM00831 Cation transporter/ATPase, N-terminus N840_4328 SM00822 N840_4328 N840_4342 SM00354 helix_turn _helix lactose operon repressor N840_4347 SM00829 Enoylreductase N840_4368 SM00965 Secretin and TonB N terminus short domain N840_4376 SM01130 N840_4376 N840_4377 SM00346 helix_turn_helix isocitrate lyase regulation N840_4378 SM00420 helix_turn_helix, Deoxyribose operon repressor N840_4378 SM01134 N840_4378 N840_4407 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_4407 SM00895 N840_4407 N840_4422 SM00345 helix_turn_helix gluconate operon transcriptional repressor N840_4427 SM00382 ATPases associated with a variety of cellular activities N840_4432 SM00487 DEAD-like helicases superfamily N840_4432 SM00490 helicase superfamily c-terminal domain N840_4434 SM00833 Cobalamin synthesis protein cobW C-terminal domain N840_4437 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N840_4437 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_4437 SM00319 Homologues of the ligand binding domain of Tar N840_4439 SM00895 N840_4439 N840_4440 SM00829 Enoylreductase N840_4443 SM00382 ATPases associated with a variety of cellular activities N840_4447 SM00421 helix_turn_helix, Lux Regulon N840_4448 SM00421 helix_turn_helix, Lux Regulon N840_4459 SM00749 bacterial OsmY and nodulation domain N840_4465 SM01133 N840_4465 N840_4466 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain N840_4473 SM00382 ATPases associated with a variety of cellular activities N840_4474 SM00530 Helix-turn-helix XRE-family like proteins N840_4475 SM00382 ATPases associated with a variety of cellular activities N840_4479 SM00855 Phosphoglycerate mutase family N840_4480 SM00342 helix_turn_helix, arabinose operon control protein N840_4480 SM00871 Bacterial transcription activator, effector binding domain N840_4482 SM00448 cheY-homologous receiver domain N840_4482 SM00862 Transcriptional regulatory protein, C terminal N840_4483 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N840_4483 SM00387 Histidine kinase-like ATPases N840_4483 SM00388 His Kinase A (phosphoacceptor) domain N840_4485 SM00448 cheY-homologous receiver domain N840_4485 SM00862 Transcriptional regulatory protein, C terminal N840_4491 SM00530 Helix-turn-helix XRE-family like proteins