locus_tag old_locus_tag gene Name start end strand product note type ID NCBI 269594 270814 + mobile_genetic_element id82 http://www.ncbi.nlm.nih.gov/gene/?term= 2070191 2071385 - mobile_genetic_element id607 http://www.ncbi.nlm.nih.gov/gene/?term= 1474112 1475332 + mobile_genetic_element id458 http://www.ncbi.nlm.nih.gov/gene/?term= 1655658 1656363 + mobile_genetic_element id502 http://www.ncbi.nlm.nih.gov/gene/?term= 15388 16732 + mobile_genetic_element id5 http://www.ncbi.nlm.nih.gov/gene/?term= 19797 20564 - mobile_genetic_element id7 http://www.ncbi.nlm.nih.gov/gene/?term= 269259 269593 + mobile_genetic_element id81 http://www.ncbi.nlm.nih.gov/gene/?term= 278216 278983 - mobile_genetic_element id87 http://www.ncbi.nlm.nih.gov/gene/?term= 2998666 2999996 - mobile_genetic_element id867 http://www.ncbi.nlm.nih.gov/gene/?term= 278984 279164 + mobile_genetic_element id88 http://www.ncbi.nlm.nih.gov/gene/?term= 1056882 1057648 + mobile_genetic_element id325 http://www.ncbi.nlm.nih.gov/gene/?term= 2105781 2106975 - mobile_genetic_element id617 http://www.ncbi.nlm.nih.gov/gene/?term= 4520382 4521149 + mobile_genetic_element id1313 http://www.ncbi.nlm.nih.gov/gene/?term= 4504000 4505425 - mobile_genetic_element id1302 http://www.ncbi.nlm.nih.gov/gene/?term= 279167 279478 - mobile_genetic_element id90 http://www.ncbi.nlm.nih.gov/gene/?term= 4500091 4501421 + mobile_genetic_element id1298 http://www.ncbi.nlm.nih.gov/gene/?term= 4510917 4511711 + mobile_genetic_element id1308 http://www.ncbi.nlm.nih.gov/gene/?term= 1432415 1433610 - mobile_genetic_element id448 http://www.ncbi.nlm.nih.gov/gene/?term= 3132449 3133643 + mobile_genetic_element id904 http://www.ncbi.nlm.nih.gov/gene/?term= 2072973 2074303 - mobile_genetic_element id609 http://www.ncbi.nlm.nih.gov/gene/?term= 573640 574834 - mobile_genetic_element id199 http://www.ncbi.nlm.nih.gov/gene/?term= 3652723 3653917 - mobile_genetic_element id1043 http://www.ncbi.nlm.nih.gov/gene/?term= 2292948 2294142 - mobile_genetic_element id669 http://www.ncbi.nlm.nih.gov/gene/?term= 686898 688092 - mobile_genetic_element id226 http://www.ncbi.nlm.nih.gov/gene/?term= 289686 290453 - mobile_genetic_element id94 http://www.ncbi.nlm.nih.gov/gene/?term= 1300442 1301421 - mobile_genetic_element id409 http://www.ncbi.nlm.nih.gov/gene/?term= 270815 271243 + mobile_genetic_element id83 http://www.ncbi.nlm.nih.gov/gene/?term= 4510590 4510916 - mobile_genetic_element id1307 http://www.ncbi.nlm.nih.gov/gene/?term= 4509369 4510589 - mobile_genetic_element id1306 http://www.ncbi.nlm.nih.gov/gene/?term= 3721321 3722763 + mobile_genetic_element id1061 http://www.ncbi.nlm.nih.gov/gene/?term= 3366242 3367436 - mobile_genetic_element id982 http://www.ncbi.nlm.nih.gov/gene/?term= 3584115 3584882 + mobile_genetic_element id1032 http://www.ncbi.nlm.nih.gov/gene/?term= 390759 392016 - mobile_genetic_element id139 http://www.ncbi.nlm.nih.gov/gene/?term= 1101346 1102603 - mobile_genetic_element id344 http://www.ncbi.nlm.nih.gov/gene/?term= 2518303 2519647 + mobile_genetic_element id712 http://www.ncbi.nlm.nih.gov/gene/?term= 3186780 3188110 + mobile_genetic_element id918 http://www.ncbi.nlm.nih.gov/gene/?term= 380310 381640 + mobile_genetic_element id134 http://www.ncbi.nlm.nih.gov/gene/?term= 607055 608399 + mobile_genetic_element id209 http://www.ncbi.nlm.nih.gov/gene/?term= 4509035 4509368 + mobile_genetic_element id1304 http://www.ncbi.nlm.nih.gov/gene/?term= 1507977 1509724 - mobile_genetic_element id468 http://www.ncbi.nlm.nih.gov/gene/?term= 273008 274202 - mobile_genetic_element id85 http://www.ncbi.nlm.nih.gov/gene/?term= 314278 315535 + mobile_genetic_element id99 http://www.ncbi.nlm.nih.gov/gene/?term= 565826 567083 + mobile_genetic_element id196 http://www.ncbi.nlm.nih.gov/gene/?term= 2174203 2175460 + mobile_genetic_element id639 http://www.ncbi.nlm.nih.gov/gene/?term= 1472726 1474056 - mobile_genetic_element id459 http://www.ncbi.nlm.nih.gov/gene/?term= 1400860 1402054 + mobile_genetic_element id428 http://www.ncbi.nlm.nih.gov/gene/?term= N840_0000 N840_0000 thrL thrL 190 255 + thr operon leader peptide gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0000 N840_0001 N840_0001 thrA thrA 337 2799 + fused asparotkinase I and homoserine dehydrogenase I bifunctional: aspartokinase I (N-terminal)%3B homoserine dehydrogenase I (C-terminal) gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0001 N840_0002 N840_0002 thrB thrB 2801 3733 + homoserine kinase gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0002 N840_0003 N840_0003 thrC thrC 3734 5020 + threonine synthase gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0003 N840_0004 N840_0004 yaaX yaaX 5234 5530 + yaaX gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0004 N840_0005 N840_0005 yaaA yaaA 5683 6459 - peroxide resistance protein%2C lowers intracellular iron gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0005 N840_0006 N840_0006 yaaJ yaaJ 6529 7960 - inner membrane transport protein%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0006 N840_0007 N840_0007 talB talB 8239 9192 + transaldolase B gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0007 N840_0008 N840_0008 mog mog 9307 9894 + molybdochelatase incorporating molybdenum into molybdopterin putative molybdochetalase in molybdopterine biosynthesis gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0008 N840_0009 N840_0009 yaaH yaaH 9929 10495 - inner membrane protein%2C Grp1_Fun34_YaaH family gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0009 N840_0010 N840_0010 yaaW yaaW 10644 11357 - conserved protein%2C UPF0174 family gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0010 N840_0011 N840_0011 yaaI yaaI 11383 11787 - conserved protein%2C UPF0412 family gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0011 N840_0012 N840_0012 dnaK dnaK 12164 14080 + chaperone Hsp70%2C co-chaperone with DnaJ chaperone Hsp70%3B DNA biosynthesis%3B autoregulated heat shock proteins gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0012 N840_0013 N840_0013 dnaJ dnaJ 14169 15299 + chaperone Hsp40%2C co-chaperone with DnaK chaperone with DnaK%3B heat shock protein gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0013 N840_0014 N840_0014 insL1 insL1 15446 16558 + IS186 transposase gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0014 N840_0015 N840_0015 mokC mokC 16752 16961 - regulatory protein for HokC regulatory peptide whose translation enables hokC (gef) expression%3B overlaps CDS of hokC gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0015 N840_0016 N840_0016 hokC hokC 16752 16904 - toxic membrane protein%2C small small toxic membrane polypeptide gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0016 N840_0017 N840_0017 sokC sokC 16953 17007 + sRNA antisense regulator blocking mokC%2C and hence hokC%2C translation IS186A interrupts hokC transcript downstream of hokC gene in K-12 gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0017 N840_0018 N840_0018 nhaA nhaA 17490 18656 + sodium-proton antiporter Na+/H antiporter%2C pH dependent gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0018 N840_0019 N840_0019 nhaR nhaR 18716 19621 + DNA-binding transcriptional activator transcriptional activator of nhaA gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0019 N840_0020 N840_0020 insB1 insB1 19812 20315 - IS1 transposase B gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0020 N840_0021 N840_0021 insA insA 20234 20509 - IS1 repressor TnpA insA1 gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0021 N840_0022 N840_0022 rpsT rpsT 20816 21079 - 30S ribosomal subunit protein S20 gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0022 N840_0023 N840_0023 yaaY yaaY 21182 21400 + yaaY gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0023 N840_0024 N840_0024 ribF ribF 21408 22349 + bifunctional riboflavin kinase/FAD synthetase gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0024 N840_0025 N840_0025 ileS ileS 22392 25208 + isoleucyl-tRNA synthetase isoleucine tRNA synthetase gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0025 N840_0026 N840_0026 lspA lspA 25208 25702 + prolipoprotein signal peptidase (signal peptidase II) prolipoprotein signal peptidase (SPase II) gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0026 N840_0027 N840_0027 fkpB fkpB 25827 26276 + FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0027 N840_0028 N840_0028 ispH ispH 26278 27228 + 4-hydroxy-3-methylbut-2-enyl diphosphate reductase%2C 4Fe-4S protein gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0028 N840_0029 N840_0029 rihC rihC 27294 28208 + ribonucleoside hydrolase 3 gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0029 N840_0030 N840_0030 dapB dapB 28375 29196 + dihydrodipicolinate reductase gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0030 N840_0031 N840_0031 carA carA 29652 30800 + carbamoyl phosphate synthetase small subunit%2C glutamine amidotransferase gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0031 N840_0032 N840_0032 carB carB 30818 34039 + carbamoyl-phosphate synthase large subunit gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0032 N840_0033 N840_0033 caiF caiF 34301 34696 + DNA-binding transcriptional activator transcriptional regulator of cai operon gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0033 N840_0034 N840_0034 caiE caiE 34782 35372 - stimulator of CaiD and CaiB enzyme activities possible synthesis of cofactor for carnitine racemase and dehydratase gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0034 N840_0035 N840_0035 caiD caiD 35378 36163 - carnitinyl-CoA dehydratase carnitine racemase gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0035 N840_0036 N840_0036 caiC caiC 36272 37825 - putative crotonobetaine/carnitine-CoA ligase probable crotonobetaine/carnitine-CoA ligase gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0036 N840_0037 N840_0037 caiB caiB 37899 39116 - crotonobetainyl CoA:carnitine CoA transferase l-carnitine dehydratase gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0037 N840_0038 N840_0038 caiA caiA 39245 40387 - crotonobetaine reductase subunit II%2C FAD-binding protein probable carnitine operon oxidoreductase gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0038 N840_0039 N840_0039 caiT caiT 40418 41932 - putative transporter probable carnitine transporter gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0039 N840_0040 N840_0040 fixA fixA 42404 43174 + putative electron transfer flavoprotein subunit%2C required for anaerobic carnitine reduction probable flavoprotein subunit%2C carnitine metabolism gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0040 N840_0041 N840_0041 fixB fixB 43189 44130 + putative electron transfer flavoprotein%2C NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like protein probable flavoprotein subunit%2C carnitine metabolism gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0041 N840_0042 N840_0042 fixC fixC 44181 45467 + putative oxidoreductase with FAD/NAD(P)-binding domain flavoprotein%3B electron transport gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0042 N840_0043 N840_0043 fixX fixX 45464 45751 + putative 4Fe-4S ferredoxin-type protein putative ferredoxin gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0043 N840_0044 N840_0044 yaaU yaaU 45808 47139 + putative transporter putative transport protein gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0044 N840_0045 N840_0045 kefF kefF 47247 47777 + potassium-efflux system ancillary protein for KefC%2C glutathione-regulated%3B quinone oxidoreductase%2C FMN-dependent putative NAD(P)H oxidoreductase gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0045 N840_0046 N840_0046 kefC kefC 47770 49632 + potassium:proton antiporter K+ efflux antiporter%2C glutathione-regulated gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0046 N840_0047 N840_0047 folA folA 49824 50303 + dihydrofolate reductase dihydrofolate reductase type I%3B trimethoprim resistance gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0047 N840_0048 N840_0048 apaH apaH 50381 51223 - diadenosine tetraphosphatase gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0048 N840_0049 N840_0049 apaG apaG 51230 51607 - protein associated with Co2+ and Mg2+ efflux gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0049 N840_0050 N840_0050 rsmA rsmA 51610 52431 - 16S rRNA m(6)A1518%2C m(6)A1519 dimethyltransferase%2C SAM-dependent gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0050 N840_0051 N840_0051 pdxA pdxA 52428 53417 - 4-hydroxy-L-threonine phosphate dehydrogenase%2C NAD-dependent pyridoxine biosynthesis gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0051 N840_0052 N840_0052 surA surA 53417 54703 - peptidyl-prolyl cis-trans isomerase (PPIase) survival protein gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0052 N840_0053 N840_0053 lptD lptD 54756 57110 - LPS assembly OM complex LptDE%2C beta-barrel component organic solvent tolerance gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0053 N840_0054 N840_0054 djlA djlA 57365 58180 + DnaJ-like protein%2C membrane anchored gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0054 N840_0055 N840_0055 yabP yabP 58475 59270 + pseudogene pseudogene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0055 N840_0056 N840_0056 rluA rluA 59688 60347 - dual specificity 23S rRNA pseudouridine(746)%2C tRNA pseudouridine(32) synthase%2C SAM-dependent gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0056 N840_0057 N840_0057 rapA rapA 60359 63265 - RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) probable ATP-dependent RNA helicase gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0057 N840_0058 N840_0058 polB polB 63430 65781 - DNA polymerase II gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0058 N840_0059 N840_0059 araD araD 65856 66551 - L-ribulose-5-phosphate 4-epimerase gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0059 N840_0060 N840_0060 araA araA 66666 68168 - L-arabinose isomerase gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0060 N840_0061 N840_0061 araB araB 68179 69879 - L-ribulokinase gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0061 N840_0062 N840_0062 araC araC 70218 71096 + DNA-binding transcriptional dual regulator transcriptional regulator for ara operon gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0062 N840_0063 N840_0063 yabI yabI 71182 71946 + inner membrane protein%2C SNARE_assoc family gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0063 N840_0064 N840_0064 thiQ thiQ 72060 72758 - thiamin transporter subunit putative ATP-binding component of a transport system gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0064 N840_0065 N840_0065 thiP thiP 72742 74352 - fused thiamin transporter subunits of ABC superfamily: membrane components gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0065 N840_0066 N840_0066 thiB thiB 74328 75311 - thiamin transporter subunit thiamin-binding periplasmic protein%3B periplasmic-binding component of ABC superfamily gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0066 N840_0067 N840_0067 sgrR sgrR 75475 77130 - transcriptional DNA-binding transcriptional activator of sgrS sRNA putative transport protein gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0067 N840_0068 N840_0068 sgrS sgrS 77198 77424 + sRNA antisense regulator destabilzes ptsG mRNA%2C Hfq-dependent%3B regulated by sgrR gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0068 N840_0069 N840_0069 sgrT sgrT 77219 77350 + Inhibitor of glucose uptake gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0069 N840_0070 N840_0070 setA setA 77452 78630 + broad specificity sugar efflux system gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0070 N840_0071 N840_0071 leuD leuD 78679 79284 - 3-isopropylmalate dehydratase small subunit isopropylmalate isomerase subunit gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0071 N840_0072 N840_0072 leuC leuC 79295 80695 - 3-isopropylmalate dehydratase large subunit 3-isopropylmalate isomerase (dehydratase) subunit gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0072 N840_0073 N840_0073 leuB leuB 80698 81789 - 3-isopropylmalate dehydrogenase%2C NAD(+)-dependent gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0073 N840_0074 N840_0074 leuA leuA 81789 83360 - 2-isopropylmalate synthase gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0074 N840_0075 N840_0075 leuL leuL 83453 83539 - leu operon leader peptide gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0075 N840_0076 N840_0076 leuO leuO 84199 85143 + DNA-binding transcriptional activator probable transcriptional activator for leuABCD operon gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0076 N840_0077 N840_0077 ilvI ilvI 85461 87185 + acetolactate synthase III%2C large subunit acetolactate synthase III%2C valine sensitive%2C large subunit gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0077 N840_0078 N840_0078 ilvH ilvH 87188 87679 + acetolactate synthase III%2C thiamin-dependent%2C small subunit acetolactate synthase III%2C valine sensitive%2C small subunit gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0078 N840_0079 N840_0079 cra cra 87859 88863 + DNA-binding transcriptional repressor-activator for carbon metabolism transcriptional repressor of fru operon and others gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0079 N840_0080 N840_0080 mraZ mraZ 89465 89923 + RsmH methytransferase inhibitor gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0080 N840_0081 N840_0081 rsmH rsmH 89925 90866 + 16S rRNA m(4)C1402 methyltransferase%2C SAM-dependent putative apolipoprotein gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0081 N840_0082 N840_0082 ftsL ftsL 90863 91228 + membrane bound cell division protein at septum containing leucine zipper motif cell division protein%3B ingrowth of wall at septum gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0082 N840_0083 N840_0083 ftsI ftsI 91244 93010 + transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) septum formation%3B penicillin-binding protein 3%3B peptidoglycan synthetase gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0083 N840_0084 N840_0084 murE murE 92997 94484 + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0084 N840_0085 N840_0085 murF murF 94481 95839 + UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0085 N840_0086 N840_0086 mraY mraY 95833 96915 + phospho-N-acetylmuramoyl-pentapeptide transferase phospho-N-acetylmuramoyl-pentapeptide transferase? gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0086 N840_0087 N840_0087 murD murD 96918 98234 + UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0087 N840_0088 N840_0088 ftsW ftsW 98234 99478 + lipid II flippase%3B integral membrane protein involved in stabilizing FstZ ring during cell division cell division%3B membrane protein involved in shape determination gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0088 N840_0089 N840_0089 murG murG 99475 100542 + N-acetylglucosaminyl transferase gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0089 N840_0090 N840_0090 murC murC 100596 102071 + UDP-N-acetylmuramate:L-alanine ligase gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0090 N840_0091 N840_0091 ddlB ddlB 102064 102984 + D-alanine:D-alanine ligase D-alanine-D-alanine ligase B%2C affects cell division gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0091 N840_0092 N840_0092 ftsQ ftsQ 102986 103816 + divisome assembly protein%2C membrane anchored protein involved in growth of wall at septum cell division protein%3B ingrowth of wall at septum gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0092 N840_0093 N840_0093 ftsA ftsA 103813 105075 + ATP-binding cell division protein involved in recruitment of FtsK to Z ring ATP-binding cell division protein%2C septation process%2C complexes with FtsZ%2C associated with junctions of inner and outer membranes gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0093 N840_0094 N840_0094 ftsZ ftsZ 105136 106287 + GTP-binding tubulin-like cell division protein cell division%3B forms circumferential ring%3B tubulin-like GTP-binding protein and GTPase gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0094 N840_0095 N840_0095 lpxC lpxC 106388 107305 + UDP-3-O-acyl N-acetylglucosamine deacetylase UDP-3-O-acyl N-acetylglucosamine deacetylase%3B lipid A biosynthesis gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0095 N840_0096 N840_0096 secM secM 107536 108048 + regulator of secA translation gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0096 N840_0097 N840_0097 secA secA 108110 110815 + preprotein translocase subunit%2C ATPase preprotein translocase%3B secretion protein gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0097 N840_0098 N840_0098 mutT mutT 110875 111264 + nucleoside triphosphate pyrophosphohydrolase%2C marked preference for dGTP 7%2C8-dihydro-8-oxoguanine-triphosphatase%2C prefers dGTP%2C causes AT-GC transversions gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0098 N840_0099 N840_0099 yacG yacG 111480 111677 - DNA gyrase inhibitor gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0099 N840_0100 N840_0100 zapD zapD 111687 112430 - FtsZ stabilizer gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0100 N840_0101 N840_0101 coaE coaE 112430 113050 - dephospho-CoA kinase putative DNA repair protein gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0101 N840_0102 N840_0102 guaC guaC 113275 114318 + GMP reductase gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0102 N840_0103 N840_0103 hofC hofC 114353 115555 - assembly protein in type IV pilin biogenesis%2C transmembrane protein putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0103 N840_0104 N840_0104 hofB hofB 115545 116930 - conserved protein with nucleoside triphosphate hydrolase domain putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0104 N840_0105 N840_0105 ppdD ppdD 116940 117380 - putative major pilin subunit prelipin peptidase dependent protein gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0105 N840_0106 N840_0106 nadC nadC 117583 118476 - quinolinate phosphoribosyltransferase gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0106 N840_0107 N840_0107 ampD ampD 118564 119115 + 1%2C6-anhydro-N-acetylmuramyl-L-alanine amidase%2C Zn-dependent%3B murein amidase regulates ampC gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0107 N840_0108 N840_0108 ampE ampE 119112 119966 + putative inner membrane protein regulates ampC gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0108 N840_0109 N840_0109 aroP aroP 120009 121382 - aromatic amino acid transporter aromatic amino acid transport protein gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0109 N840_0110 N840_0110 pdhR pdhR 121923 122687 + DNA-binding transcriptional dual regulator transcriptional regulator for pyruvate dehydrogenase complex gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0110 N840_0111 N840_0111 aceE aceE 122848 125511 + pyruvate dehydrogenase%2C decarboxylase component E1%2C thiamin-binding protein pyruvate dehydrogenase (decarboxylase component) gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0111 N840_0112 N840_0112 aceF aceF 125526 127418 + pyruvate dehydrogenase%2C dihydrolipoyltransacetylase component E2 pyruvate dehydrogenase (dihydrolipoyltransacetylase component) gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0112 N840_0113 N840_0113 lpd lpd 127743 129167 + lipoamide dehydrogenase%2C E3 component is part of three enzyme complexes lipoamide dehydrogenase (NADH)%3B component of 2-oxodehydrogenase and pyruvate complexes%3B L-protein of glycine cleavage complex gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0113 N840_0114 N840_0114 yacH yacH 129238 131091 - yacH putative membrane protein gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0114 N840_0115 N840_0115 acnB acnB 131446 134043 + bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase aconitate hydrase B gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0115 N840_0116 N840_0116 yacL yacL 134219 134581 + yacL gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0116 N840_0117 N840_0117 speD speD 134619 135413 - S-adenosylmethionine decarboxylase gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0117 N840_0118 N840_0118 speE speE 135429 136295 - spermidine synthase (putrescine aminopropyltransferase) spermidine synthase %3D putrescine aminopropyltransferase gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0118 N840_0119 N840_0119 yacC yacC 136401 136748 - conserved protein%2C PulS_OutS family gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0119 N840_0120 N840_0120 cueO cueO 136914 138464 + multicopper oxidase (laccase) gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0120 N840_0121 N840_0121 gcd gcd 138666 141056 - glucose dehydrogenase gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0121 N840_0122 N840_0122 hpt hpt 141262 141798 + hypoxanthine phosphoribosyltransferase gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0122 N840_0123 N840_0123 can can 141839 142501 - carbonic anhydrase putative carbonic anhdrase gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0123 N840_0124 N840_0124 yadG yadG 142610 143536 + putative transporter subunit: ATP-binding component of ABC superfamily putative ATP-binding component of a transport system gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0124 N840_0125 N840_0125 yadH yadH 143533 144303 + putative transporter subunit: membrane component of ABC superfamily gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0125 N840_0126 N840_0126 yadI yadI 144408 144848 + putative PTS Enzyme IIA putative PTS enzyme II B component gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0126 N840_0127 N840_0127 yadE yadE 144912 146141 + putative polysaccharide deacetylase lipoprotein conserved hypothetical protein gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0127 N840_0128 N840_0128 panD panD 146145 146525 - aspartate 1-decarboxylase gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0128 N840_0129 N840_0129 yadD yadD 146799 147701 + putative transposase gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0129 N840_0130 N840_0130 panC panC 147775 148626 - pantothenate synthetase gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0130 N840_0131 N840_0131 panB panB 148638 149432 - 3-methyl-2-oxobutanoate hydroxymethyltransferase gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0131 N840_0132 N840_0132 yadC yadC 149546 150784 - putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0132 N840_0133 N840_0133 yadK yadK 150834 151430 - putative fimbrial-like adhesin protein putative fimbrial protein gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0133 N840_0134 N840_0134 yadL yadL 151457 152062 - putative fimbrial-like adhesin protein putative fimbrial protein gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0134 N840_0135 N840_0135 yadM yadM 152074 152643 - putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0135 N840_0136 N840_0136 htrE htrE 152660 155257 - putative outer membrane usher protein probable outer membrane porin protein involved in fimbrial assembly gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0136 N840_0137 N840_0137 yadV yadV 155292 156032 - putative periplasmic pilin chaperone probable pilin chaperone similar to PapD gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0137 N840_0138 N840_0138 yadN yadN 156130 156714 - putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0138 N840_0139 N840_0139 folK folK 157084 157563 - 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase 7%2C8-dihydro-6-hydroxymethylpterin- pyrophosphokinase gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0139 N840_0140 N840_0140 pcnB pcnB 157560 158957 - poly(A) polymerase gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0140 N840_0141 N840_0141 gluQ gluQ 159017 159943 - glutamyl-Q tRNA(Asp) synthetase putative tRNA synthetase gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0141 N840_0142 N840_0142 dksA dksA 159980 160435 - DNA-binding transcriptional regulator of rRNA transcription%2C DnaK suppressor protein dnaK suppressor protein gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0142 N840_0143 N840_0143 sfsA sfsA 160613 161317 - putative DNA-binding transcriptional regulator probable regulator for maltose metabolism gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0143 N840_0144 N840_0144 ligT ligT 161332 161862 - 2'-5' RNA ligase gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0144 N840_0145 N840_0145 hrpB hrpB 161936 164365 + putative ATP-dependent helicase helicase%2C ATP-dependent gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0145 N840_0146 N840_0146 mrcB mrcB 164561 167095 + fused glycosyl transferase and transpeptidase peptidoglycan synthetase%3B penicillin-binding protein 1B gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0146 N840_0147 N840_0147 fhuA fhuA 167315 169558 + ferrichrome outer membrane transporter outer membrane protein receptor for ferrichrome%2C colicin M%2C and phages T1%2C T5%2C and phi80 gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0147 N840_0148 N840_0148 fhuC fhuC 169609 170406 + iron-hydroxamate transporter subunit ATP-binding component of hydroxymate-dependent iron transport gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0148 N840_0149 N840_0149 fhuD fhuD 170406 171296 + iron-hydroxamate transporter subunit hydroxamate-dependent iron uptake%2C cytoplasmic membrane component%3B periplasmic-binding component of ABC superfamily gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0149 N840_0150 N840_0150 fhuB fhuB 171293 173275 + fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0150 N840_0151 N840_0151 hemL hemL 173433 174713 - glutamate-1-semialdehyde aminotransferase (aminomutase) gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0151 N840_0152 N840_0152 clcA clcA 174938 176359 + H(+)/Cl(-) exchange transporter putative channel transporter gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0152 N840_0153 N840_0153 erpA erpA 176441 176785 + iron-sulfur cluster insertion protein gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0153 N840_0154 N840_0154 yadS yadS 176832 177455 - inner membrane protein%2C UPF0126 family gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0154 N840_0155 N840_0155 btuF btuF 177493 178293 - vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0155 N840_0156 N840_0156 mtn mtn 178286 178984 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0156 N840_0157 N840_0157 dgt dgt 179068 180585 + deoxyguanosine triphosphate triphosphohydrolase gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0157 N840_0158 N840_0158 degP degP 180715 182139 + serine endoprotease (protease Do)%2C membrane-associated periplasmic serine protease Do%3B heat shock protein HtrA gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0158 N840_0159 N840_0159 cdaR cdaR 182294 183450 + Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0159 N840_0160 N840_0160 yaeH yaeH 183539 183925 - conserved protein%2C UPF0325 family putative structural protein gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0160 N840_0161 N840_0161 yaeI yaeI 184087 184899 - phosphodiesterase with model substrate bis-pNPP gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0161 N840_0162 N840_0162 dapD dapD 184953 185777 - 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0162 N840_0163 N840_0163 glnD glnD 185808 188480 - uridylyltransferase protein PII%3B uridylyltransferase acts on regulator of glnA gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0163 N840_0164 N840_0164 map map 188542 189336 - methionine aminopeptidase gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0164 N840_0165 N840_0165 tff tff 189542 189677 + novel sRNA%2C function unknown identified in a large scale screen ncRNA gene165 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0165 N840_0166 N840_0166 rpsB rpsB 189704 190429 + 30S ribosomal subunit protein S2 gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0166 N840_0167 N840_0167 tsf tsf 190687 191538 + protein chain elongation factor EF-Ts gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0167 N840_0168 N840_0168 pyrH pyrH 191685 192410 + uridylate kinase gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0168 N840_0169 N840_0169 frr frr 192702 193259 + ribosome recycling factor ribosome releasing factor gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0169 N840_0170 N840_0170 dxr dxr 193351 194547 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0170 N840_0171 N840_0171 ispU ispU 194733 195494 + undecaprenyl pyrophosphate synthase undecaprenyl pyrophosphate synthetase (di-trans%2Cpoly-cis-decaprenylcistransferase) gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0171 N840_0172 N840_0172 cdsA cdsA 195507 196364 + CDP-diglyceride synthase CDP-diglyceride synthetase gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0172 N840_0173 N840_0173 rseP rseP 196376 197728 + inner membrane zinc RIP metalloprotease%3B RpoE activator%2C by degrading RseA%3B cleaved signal peptide endoprotease gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0173 N840_0174 N840_0174 bamA bamA 197758 200190 + outer membrane protein assembly factor%2C forms pores%3B required for OM biogenesis%3B in BamABCDE OM protein complex putative outer membrane antigen gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0174 N840_0175 N840_0175 skp skp 200312 200797 + periplasmic chaperone periplasmic molecular chaperone for outer membrane proteins gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0175 N840_0176 N840_0176 lpxD lpxD 200801 201826 + UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0176 N840_0177 N840_0177 fabZ fabZ 201931 202386 + (3R)-hydroxymyristol acyl carrier protein dehydratase gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0177 N840_0178 N840_0178 lpxA lpxA 202390 203178 + UDP-N-acetylglucosamine acetyltransferase UDP-N-acetylglucosamine acetyltransferase%3B lipid A biosynthesis gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0178 N840_0179 N840_0179 lpxB lpxB 203178 204326 + tetraacyldisaccharide-1-P synthase tetraacyldisaccharide-1-P%3B lipid A biosynthesis%2C penultimate step gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0179 N840_0180 N840_0180 rnhB rnhB 204323 204919 + ribonuclease HII%2C degrades RNA of DNA-RNA hybrids RNAse HII%2C degrades RNA of DNA-RNA hybrids gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0180 N840_0181 N840_0181 dnaE dnaE 204956 208438 + DNA polymerase III alpha subunit DNA polymerase III%2C alpha subunit gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0181 N840_0182 N840_0182 accA accA 208451 209410 + acetyl-CoA carboxylase%2C carboxytransferase%2C alpha subunit acetylCoA carboxylase%2C carboxytransferase component%2C alpha subunit gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0182 N840_0183 N840_0183 ldcC ldcC 209509 211650 + lysine decarboxylase 2%2C constitutive gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0183 N840_0184 N840_0184 yaeR yaeR 211707 212096 + putative lyase gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0184 N840_0185 N840_0185 tilS tilS 212161 213459 + tRNA(Ile)-lysidine synthetase gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0185 N840_0186 N840_0186 rof rof 213508 213762 - modulator of Rho-dependent transcription termination gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0186 N840_0187 N840_0187 yaeP yaeP 213755 213955 - yaeP conserved hypothetical protein gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0187 N840_0188 N840_0188 yaeQ yaeQ 214121 214666 + yaeQ gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0188 N840_0189 N840_0189 arfB arfB 214663 215085 + alternative stalled-ribosome rescue factor B%3B peptidyl-tRNA hydrolase%2C ribosome-attached gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0189 N840_0190 N840_0190 nlpE nlpE 215099 215809 + lipoprotein involved with copper homeostasis and adhesion copper homeostasis protein (lipoprotein) gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0190 N840_0191 N840_0191 yaeF yaeF 216009 216833 - putative lipoprotein gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0191 N840_0192 N840_0192 proS proS 216887 218605 - prolyl-tRNA synthetase proline tRNA synthetase gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0192 N840_0193 N840_0193 tsaA tsaA 218717 219424 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase%2C SAM-dependent gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0193 N840_0194 N840_0194 rcsF rcsF 219421 219825 - putative outer membrane protein%2C signal regulator in colanic acid synthesis%3B interacts with RcsB gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0194 N840_0195 N840_0195 metQ metQ 219943 220758 - DL-methionine transporter subunit D-methionine transport protein (ABC superfamily%2C peri_bind) gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0195 N840_0196 N840_0196 metI metI 220798 221451 - DL-methionine transporter subunit D- and L-methionine transport protein (ABC superfamily%2C membrane) gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0196 N840_0197 N840_0197 metN metN 221444 222475 - DL-methionine transporter subunit D- and L-methionine transport protein (ABC superfamily%2C atp_bind) gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0197 N840_0198 N840_0198 gmhB gmhB 222663 223238 + D%2CD-heptose 1%2C7-bisphosphate phosphatase gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0198 N840_0199 N840_0199 rrsH rrsH 223601 225142 + 16S ribosomal RNA rRNA gene199 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0199 N840_0200 N840_0200 ileV ileV 225211 225287 + tRNA-Ile anticodon: GAU tRNA gene200 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0200 N840_0201 N840_0201 alaV alaV 225330 225405 + tRNA-Ala anticodon: UGC tRNA gene201 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0201 N840_0202 N840_0202 rrlH rrlH 225589 228492 + 23S ribosomal RNA rRNA gene202 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0202 N840_0203 N840_0203 rrfH rrfH 228586 228705 + 5S ribosomal RNA rRNA gene203 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0203 N840_0204 N840_0204 aspU aspU 228758 228834 + tRNA-Asp anticodon: GUC tRNA gene204 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0204 N840_0205 N840_0205 dkgB dkgB 228997 229800 + 2%2C5-diketo-D-gluconate reductase B gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0205 N840_0206 N840_0206 yafC yafC 229797 230711 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0206 N840_0207 N840_0207 yafD yafD 230952 231752 + yafD gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0207 N840_0208 N840_0208 yafE yafE 231756 232379 + putative S-adenosyl-L-methionine-dependent methyltransferase putative biotin synthesis protein gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0208 N840_0209 N840_0209 mltD mltD 232427 233785 - putative membrane-bound lytic murein transglycosylase D gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0209 N840_0210 N840_0210 gloB gloB 233857 234612 - hydroxyacylglutathione hydrolase probable hydroxyacylglutathione hydrolase gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0210 N840_0211 N840_0211 yafS yafS 234646 235368 + putative S-adenosyl-L-methionine-dependent methyltransferase gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0211 N840_0212 N840_0212 rnhA rnhA 235365 235832 - ribonuclease HI%2C degrades RNA of DNA-RNA hybrids RNase HI%2C degrades RNA of DNA-RNA hybrids%2C participates in DNA replication gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0212 N840_0213 N840_0213 dnaQ dnaQ 235897 236628 + DNA polymerase III epsilon subunit DNA polymerase III%2C epsilon subunit gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0213 N840_0214 N840_0214 aspV aspV 236761 236837 + tRNA-Asp anticodon: GUC tRNA gene214 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0214 N840_0215 N840_0215 yafT yafT 237165 237950 + lipoprotein putative aminopeptidase gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0215 N840_0216 N840_0216 ykfM ykfM 238087 238566 - ykfM gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0216 N840_0217 N840_0217 yafU yafU 238576 238932 - pseudogene%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0217 N840_0218 N840_0218 yafF yafF 238936 239208 + pseudogene%2C H repeat-associated protein%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0218 N840_0219 N840_0219 yafV yafV 239249 240019 - putative C-N hydrolase family amidase%2C NAD(P)-binding protein putative EC 3.5. amidase-type enzyme gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0219 N840_0220 N840_0220 ivy ivy 240173 240646 + inhibitor of c-type lysozyme%2C periplasmic inhibitor of vertebrate C-type lysozyme%2C periplasmic gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0220 N840_0221 N840_0221 fadE fadE 240689 243133 - acyl coenzyme A dehydrogenase gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0221 N840_0222 N840_0222 gmhA gmhA 243373 243951 + D-sedoheptulose 7-phosphate isomerase phosphoheptose isomerase gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0222 N840_0223 N840_0223 yafJ yafJ 244157 244924 + putative amidotransfease putative amidotransferase gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0223 N840_0224 N840_0224 yafK yafK 244895 245635 - yafK gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0224 N840_0225 N840_0225 yafQ yafQ 245791 246069 - translation inhibitor toxin of toxin-antitoxin pair YafQ/DinJ gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0225 N840_0226 N840_0226 dinJ dinJ 246072 246332 - antitoxin of YafQ-DinJ toxin-antitoxin system damage-inducible protein J gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0226 N840_0227 N840_0227 yafL yafL 246542 247291 + putative lipoprotein and C40 family peptidase putative lipoprotein gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0227 N840_0228 N840_0228 rayT rayT 247466 247963 + RAYT REP element-mobilizing transposase%3B TnpA(REP) gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0228 N840_0229 N840_0229 lfhA lfhA 248187 249899 - pseudogene%2C flagellar system protein%2C promoterless fragment%3B flagellar biosynthesis pseudogene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0229 N840_0230 N840_0230 lafU lafU 249901 250656 + pseudogene%2C lateral flagellar motor protein fragment%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0230 N840_0231 N840_0231 dinB dinB 250727 251782 + DNA polymerase IV DNA polymerase IV%3B DNA polymerase IV%2C devoid of proofreading%2C damage-inducible protein P gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0231 N840_0232 N840_0232 yafN yafN 251834 252127 + antitoxin of the YafO-YafN toxin-antitoxin system gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0232 N840_0233 N840_0233 yafO yafO 252130 252528 + mRNA interferase toxin of the YafO-YafN toxin-antitoxin system gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0233 N840_0234 N840_0234 yafP yafP 252538 252990 + putative acyltransferase with acyl-CoA N-acyltransferase domain gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0234 N840_0235 N840_0235 ykfJ ykfJ 253308 253514 + pseudogene%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0235 N840_0236 N840_0236 prfH prfH 253531 254031 + pseudogene%2C predicted peptide chain release factor homolog%3B probable peptide chain release factor pseudogene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0236 N840_0237 N840_0237 pepD pepD 254088 255545 - aminoacyl-histidine dipeptidase (peptidase D) gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0237 N840_0238 N840_0238 gpt gpt 255806 256264 + guanine-hypoxanthine phosphoribosyltransferase gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0238 N840_0239 N840_0239 frsA frsA 256356 257600 + fermentation-respiration switch protein%3B PTS Enzyme IIA(Glc)-binding protein%3B pNP-butyrate esterase activity gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0239 N840_0240 N840_0240 crl crl 257658 258059 + sigma factor-binding protein%2C stimulates RNA polymerase holoenzyme formation transcriptional regulator of cryptic csgA gene for curli surface fibers gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0240 N840_0241 N840_0241 phoE phoE 258098 259153 - outer membrane phosphoporin protein E outer membrane pore protein E (E%2CIc%2CNmpAB) gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0241 N840_0242 N840_0242 proB proB 259441 260544 + gamma-glutamate kinase gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0242 N840_0243 N840_0243 proA proA 260556 261809 + gamma-glutamylphosphate reductase gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0243 N840_0244 N840_0244 thrW thrW 261924 261999 + tRNA-Thr anticodon: CGU tRNA gene244 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0244 N840_0245 N840_0245 ykfN ykfN 262203 262265 - pseudogene%2C YdiA family%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0245 N840_0246 N840_0246 ykfI ykfI 262381 262722 - CP4-6 prophage%3B toxin of the YkfI-YafW toxin-antitoxin system gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0246 N840_0247 N840_0247 yafW yafW 262743 263060 - CP4-6 prophage%3B antitoxin of the YkfI-YafW toxin-antitoxin system gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0247 N840_0248 N840_0248 ykfH ykfH 263079 263300 - ykfH gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0248 N840_0249 N840_0249 ykfG ykfG 263309 263785 - CP4-6 prophage%3B predicted DNA repair protein putative DNA repair protein gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0249 N840_0250 N840_0250 yafX yafX 263801 264259 - CP4-6 prophage%3B putative protein gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0250 N840_0251 N840_0251 ykfF ykfF 264357 264596 - CP4-6 prophage%3B putative protein gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0251 N840_0252 N840_0252 ykfB ykfB 264673 265140 - CP4-6 prophage%3B putative protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0252 N840_0253 N840_0253 yafY yafY 265163 265606 - lipoprotein%2C inner membrane%3B overproduction stimulates degP expression%3B CP4-6 prophage hypothetical transcriptional regulator gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0253 N840_0254 N840_0254 ykfL ykfL 265606 265827 - pseudogene%2C CP4-6 putative prophage remnant%3BPhage or Prophage Related pseudogene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0254 N840_0255 N840_0255 ykfK ykfK 265829 266020 - CP4-6 prophage%3B predicted DNA-binding transcriptional regulator%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0255 N840_0256 N840_0256 yafZ yafZ 266237 267058 - CP4-6 prophage%3B conserved protein gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0256 N840_0257 N840_0257 ykfA ykfA 267150 268013 - CP4-6 prophage%3B predicted GTP-binding protein putative GTP-binding protein gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0257 N840_0258 N840_0258 perR perR 268342 269235 - CP4-6 prophage%3B predicted DNA-binding transcriptional regulator peroxide resistance protein gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0258 N840_0259 N840_0259 insN insN 269331 271242 + pseudogene%2C IS911 transposase A%3BIS%2C phage%2C Tn%3B Transposon-related functions%3B extrachromosomal%3B transposon related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0259 N840_0260 N840_0260 insI1 insI1 269656 270807 + IS30 transposase gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0260 N840_0261 N840_0261 eyeA eyeA 271633 271707 + novel sRNA%2C function unknown%2C CP4-6 propahge ncRNA gene261 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0261 N840_0262 N840_0262 ykfC ykfC 271900 273007 + CP4-6 prophage%3B conserved protein%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0262 N840_0263 N840_0263 insH1 insH1 273154 274170 - IS5 transposase and trans-activator gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0263 N840_0264 N840_0264 mmuP mmuP 274378 275781 + CP4-6 prophage%3B predicted S-methylmethionine transporter gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0264 N840_0265 N840_0265 mmuM mmuM 275768 276700 + CP4-6 prophage%3B S-methylmethionine:homocysteine methyltransferase gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0265 N840_0266 N840_0266 afuC afuC 276809 277855 - CP4-6 prophage%3B predicted ferric transporter subunit putative ATP-binding component of a transport system gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0266 N840_0267 N840_0267 afuB afuB 277867 278214 - pseudogene%2C CP4-6 prophage%3B predicted ferric transporter subunit%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0267 N840_0268 N840_0268 insB1 insB1 278231 278734 - IS1 transposase B gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0268 N840_0269 N840_0269 insA insA 278653 278928 - IS1 repressor TnpA insA2 gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0269 N840_0270 N840_0270 insI1 insI1 278984 279157 + IS30 transposase%3BIS%2C phage%2C Tn%3B Transposon-related functions%3B extrachromosomal%3B transposon related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0270 N840_0271 N840_0271 insX insX 279167 279415 - pseudogene%2C predicted IS3 family transposase%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0271 N840_0272 N840_0272 yagB yagB 279480 279788 - pseudogene%2C CP4-6 prophage%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0272 N840_0273 N840_0273 yagA yagA 279882 281035 - Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0273 N840_0274 N840_0274 yagE yagE 281330 282238 + 2-keto-3-deoxy gluconate (KDG) aldolase%3B CP4-6 prophage putative lyase/synthase gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0274 N840_0275 N840_0275 yagF yagF 282253 284220 + CP4-6 prophage%3B predicted dehydratase putative dehydratase gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0275 N840_0276 N840_0276 yagG yagG 284447 285829 + CP4-6 prophage%3B predicted sugar transporter putative permease gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0276 N840_0277 N840_0277 yagH yagH 285841 287451 + CP4-6 prophage%3B predicted xylosidase/arabinosidase putative beta-xylosidase gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0277 N840_0278 N840_0278 yagI yagI 287456 288214 - CP4-6 prophage%3B predicted DNA-binding transcriptional regulator putative regulator gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0278 N840_0279 N840_0279 argF argF 288353 289357 - ornithine carbamoyltransferase 2%2C chain F%3B CP4-6 prophage ornithine carbamoyltransferase 2%2C chain F gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0279 N840_0280 N840_0280 ykgS ykgS 289481 289685 + pseudogene%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0280 N840_0281 N840_0281 insB1 insB1 289701 290204 - IS1 transposase B gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0281 N840_0282 N840_0282 insA insA 290123 290398 - IS1 repressor TnpA insA3 gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0282 N840_0283 N840_0283 yagJ yagJ 290456 291283 + CP4-6 prophage%3B putative protein%3BPhage or Prophage Related pseudogene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0283 N840_0284 N840_0284 yagK yagK 291374 292000 - CP4-6 prophage%3B conserved protein gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0284 N840_0285 N840_0285 yagL yagL 292272 292970 - CP4-6 prophage%3B DNA-binding protein DNA-binding protein gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0285 N840_0286 N840_0286 yagM yagM 292997 293851 - CP4-6 prophage%3B putative protein gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0286 N840_0287 N840_0287 yagN yagN 294191 294631 - CP4-6 prophage%3B putative protein gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0287 N840_0288 N840_0288 intF intF 294748 296148 - CP4-6 prophage%3B predicted phage integrase putative phage integrase gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0288 N840_0289 N840_0289 ptwF ptwF 296258 296306 + tRNA-OTHER pseudogenic_tRNA gene289 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0289 N840_0290 N840_0290 yagP yagP 296433 296771 - pseudogene%2C LysR family%2C fragment%3Bputative regulator%3B Not classified%3B putative transcriptional regulator LYSR-type%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0290 N840_0291 N840_0291 ykgT ykgT 296766 296843 - pseudogene%2C MobA-related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0291 N840_0292 N840_0292 paoD paoD 296822 297778 - moco insertion factor for PaoABC aldehyde oxidoreductase gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0292 N840_0293 N840_0293 paoC paoC 297788 299986 - PaoABC aldehyde oxidoreductase%2C Moco-containing subunit gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0293 N840_0294 N840_0294 paoB paoB 299983 300939 - PaoABC aldehyde oxidoreductase%2C FAD-containing subunit gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0294 N840_0295 N840_0295 paoA paoA 300936 301625 - PaoABC aldehyde oxidoreductase%2C 2Fe-2S subunit putative xanthine dehydrogenase gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0295 N840_0296 N840_0296 yagU yagU 302043 302657 + inner membrane protein%2C DUF1440 family gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0296 N840_0297 N840_0297 ykgJ ykgJ 302905 303234 - UPF0153 cysteine cluster protein%2C function unknown putative ferredoxin gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0297 N840_0298 N840_0298 ecpE ecpE 303547 304257 - ecpE gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0298 N840_0299 N840_0299 ecpD ecpD 304226 305869 - putative receptor gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0299 N840_0300 N840_0300 ecpC ecpC 305859 308384 - putative aromatic compound dioxygenase putative enzyme gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0300 N840_0301 N840_0301 ecpB ecpB 308410 309078 - ecpB gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0301 N840_0302 N840_0302 ecpA ecpA 309136 309723 - cryptic Mat fimbrillin gene gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0302 N840_0303 N840_0303 ecpR ecpR 309798 310388 - putative regulator gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0303 N840_0304 N840_0304 ykgL ykgL 311164 311391 + ykgL gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0304 N840_0305 N840_0305 ykgO ykgO 311426 311566 - RpmJ-like protein gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0305 N840_0306 N840_0306 ykgM ykgM 311566 311829 - 50S ribosomal protein L31 type B%3B alternative L31 utilized during zinc limitation gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0306 N840_0307 N840_0307 ykgR ykgR 312193 312294 - ykgR expressed protein gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0307 N840_0308 N840_0308 ykgP ykgP 312768 312857 - pseudogene%2C oxidoreductase family%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0308 N840_0309 N840_0309 eaeH eaeH 313409 314280 + pseudogene%2C attaching and effacing protein homology%3Bfactor%3B Not classified%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0309 N840_0310 N840_0310 insE1 insE1 314343 314642 + IS3 transposase A gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0310 N840_0311 N840_0311 insF1 insF1 314639 315505 + IS3 transposase B gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0311 N840_0312 N840_0312 ykgA ykgA 315538 316221 - pseudogene%2C AraC family%3Bputative regulator%3B Not classified%3B putative ARAC-type regulatory protein%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0312 N840_0313 N840_0313 ykgQ ykgQ 316491 316619 + pseudogene%2C putative dehydrogenase%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0313 N840_0314 N840_0314 ykgB ykgB 316778 317371 - inner membrane protein%2C DUF417 family gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0314 N840_0315 N840_0315 ykgI ykgI 317383 317619 - ykgI the overlapping ORF b0302 on the opposite strand is no longer thought to be an actual gene%2C and has been deaccessioned gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0315 N840_0316 N840_0316 ykgC ykgC 317728 319053 - putative pyridine nucleotide-disulfide oxidoreductase putative oxidoreductase gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0316 N840_0317 N840_0317 ykgD ykgD 319279 320133 + putative DNA-binding transcriptional regulator putative ARAC-type regulatory protein gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0317 N840_0318 N840_0318 ykgE ykgE 320659 321378 + putative oxidoreductase putative dehydrogenase subunit gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0318 N840_0319 N840_0319 ykgF ykgF 321389 322816 + putative electron transport protein with ferridoxin-like domai gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0319 N840_0320 N840_0320 ykgG ykgG 322809 323504 + putative transporter gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0320 N840_0321 N840_0321 ykgH ykgH 323747 324415 - putative inner membrane protein gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0321 N840_0322 N840_0322 betA betA 324628 326298 - choline dehydrogenase%2C a flavoprotein gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0322 N840_0323 N840_0323 betB betB 326312 327784 - betaine aldehyde dehydrogenase%2C NAD-dependent NAD+-dependent betaine aldehyde dehydrogenase gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0323 N840_0324 N840_0324 betI betI 327798 328385 - DNA-binding transcriptional repressor probably transcriptional repressor of bet genes gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0324 N840_0325 N840_0325 betT betT 328514 330547 + choline transporter of high affinity high-affinity choline transport gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0325 N840_0326 N840_0326 yahA yahA 331422 332510 + c-di-GMP-specific phosphodiesterase gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0326 N840_0327 N840_0327 yahB yahB 332552 333484 - putative DNA-bindng transcriptional regulator putative transcriptional regulator LYSR-type gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0327 N840_0328 N840_0328 yahC yahC 333576 334073 - putative inner membrane protein gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0328 N840_0329 N840_0329 yahD yahD 334331 334936 + ankyrin repeat protein putative transcription factor gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0329 N840_0330 N840_0330 yahE yahE 334976 335839 + Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0330 N840_0331 N840_0331 yahF yahF 335829 337376 + putative acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain putative oxidoreductase subunit gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0331 N840_0332 N840_0332 yahG yahG 337376 338794 + yahG gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0332 N840_0333 N840_0333 yahI yahI 339216 340166 + carbamate kinase-like protein putative kinase gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0333 N840_0334 N840_0334 yahJ yahJ 340176 341558 + putative deaminase with metallo-dependent hydrolase domain putative deaminase gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0334 N840_0335 N840_0335 yahK yahK 341935 342984 + putative oxidoreductase%2C Zn-dependent and NAD(P)-binding protein putative oxidoreductase gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0335 N840_0336 N840_0336 yahL yahL 343227 344042 + yahL gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0336 N840_0337 N840_0337 yahM yahM 344455 344700 + yahM gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0337 N840_0338 N840_0338 yahN yahN 344717 345388 - amino acid exporter for proline%2C lysine%2C glutamate%2C homoserine putative cytochrome subunit of dehydrogenase gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0338 N840_0339 N840_0339 yahO yahO 345535 345810 + periplasmic protein%2C function unknown%2C YhcN family gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0339 N840_0340 N840_0340 prpR prpR 345908 347494 - propionate catabolism operon regulatory protein regulator for prp operon gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0340 N840_0341 N840_0341 prpB prpB 347733 348623 + 2-methylisocitrate lyase putative phosphonomutase 2 gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0341 N840_0342 N840_0342 prpC prpC 349063 350232 + 2-methylcitrate synthase putative citrate synthase%3B propionate metabolism? gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0342 N840_0343 N840_0343 prpD prpD 350266 351717 + 2-methylcitrate dehydratase gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0343 N840_0344 N840_0344 prpE prpE 351757 353643 + propionate--CoA ligase putative propionyl-CoA synthetase gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0344 N840_0345 N840_0345 codB codB 353973 355232 + cytosine transporter cytosine permease/transport gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0345 N840_0346 N840_0346 codA codA 355222 356505 + cytosine/isoguanine deaminase gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0346 N840_0347 N840_0347 cynR cynR 356842 357741 - transcriptional activator of cyn operon%3B autorepressor cyn operon positive regulator gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0347 N840_0348 N840_0348 cynT cynT 357850 358509 + carbonic anhydrase gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0348 N840_0349 N840_0349 cynS cynS 358540 359010 + cyanate aminohydrolase cyanate aminohydrolase%2C cyanase gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0349 N840_0350 N840_0350 cynX cynX 359043 360197 + putative cyanate transporter cyanate transport gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0350 N840_0351 N840_0351 lacA lacA 360300 360911 - thiogalactoside acetyltransferase gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0351 N840_0352 N840_0352 lacY lacY 360977 362230 - lactose permease galactoside permease (lactose permease%2C M protein) (MFS family) gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0352 N840_0353 N840_0353 lacZ lacZ 362282 365356 - Internal stop codon introduced intentionally for benchmarking recombination frequency by Lajoie et al.%2C 2013%3B version shown in this record is in 'off' state and contains the stop codon. gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0353 N840_0354 N840_0354 lacI lacI 365479 366561 - DNA-binding transcriptional repressor transcriptional repressor of the lac operon gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0354 N840_0355 N840_0355 mhpR mhpR 366638 367471 - DNA-binding transcriptional activator%2C 3HPP-binding protein transcriptional regulator for mhp operon gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0355 N840_0356 N840_0356 mhpA mhpA 367662 369326 + 3-(3-hydroxyphenyl)propionate hydroxylase gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0356 N840_0357 N840_0357 mhpB mhpB 369328 370272 + 2%2C3-dihydroxyphenylpropionate 1%2C2-dioxygenase gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0357 N840_0358 N840_0358 mhpC mhpC 370290 371156 + Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0358 N840_0359 N840_0359 mhpD mhpD 371166 371975 + 2-keto-4-pentenoate hydratase gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0359 N840_0360 N840_0360 mhpF mhpF 371972 372922 + acetaldehyde-CoA dehydrogenase II%2C NAD-binding protein acetaldehyde dehydrogenase gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0360 N840_0361 N840_0361 mhpE mhpE 372919 373932 + 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase%2C class I 4-hydroxy-2-ketovalerate aldolase gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0361 N840_0362 N840_0362 mhpT mhpT 374510 375721 + putative 3-hydroxyphenylpropionic transporter putative transport protein gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0362 N840_0363 N840_0363 yaiL yaiL 375823 376362 + yaiL gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0363 N840_0364 N840_0364 frmB frmB 376586 377419 - S-formylglutathione hydrolase putative S-formylglutathione hydrolase gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0364 N840_0365 N840_0365 frmA frmA 377513 378622 - alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase alcohol dehydrogenase class III%3B formaldehyde dehydrogenase%2C glutathione-dependent gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0365 N840_0366 N840_0366 frmR frmR 378657 378932 - regulator protein that represses frmRAB operon repressor of frmRAB gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0366 N840_0367 N840_0367 yaiO yaiO 379119 379892 - outer membrane protein gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0367 N840_0368 N840_0368 yaiX yaiX 379894 381922 - pseudogene%2C interrupted by IS2A%2C acetyltransferase homolog%3B putative transferase%3B nonfunctional%3B interruped by IS2%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0368 N840_0369 N840_0369 insC1 insC1 380401 380766 + IS2 repressor TnpA gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0369 N840_0370 N840_0370 insD1 insD1 380724 381629 + IS2 transposase TnpB gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0370 N840_0371 N840_0371 yaiP yaiP 381789 382985 - putative glucosyltransferase polysaccharide metabolism gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0371 N840_0372 N840_0372 yaiS yaiS 383109 383666 - yaiS gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0372 N840_0373 N840_0373 tauA tauA 384282 385244 + taurine transporter subunit taurine transport system periplasmic protein gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0373 N840_0374 N840_0374 tauB tauB 385257 386024 + taurine transporter subunit taurine ATP-binding component of a transport system gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0374 N840_0375 N840_0375 tauC tauC 386021 386848 + taurine transporter subunit taurine transport system permease protein gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0375 N840_0376 N840_0376 tauD tauD 386845 387696 + taurine dioxygenase%2C 2-oxoglutarate-dependent gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0376 N840_0377 N840_0377 hemB hemB 387803 388777 - 5-aminolevulinate dehydratase (porphobilinogen synthase) 5-aminolevulinate dehydratase %3D porphobilinogen synthase gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0377 N840_0378 N840_0378 yaiT yaiT 389301 393468 + putative protein%3Bputative structure%3B Not classified%3B putative flagellin structural protein%3B interrupted by IS3 pseudogene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0378 N840_0379 N840_0379 insF1 insF1 390789 391655 - IS3 transposase B gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0379 N840_0380 N840_0380 insE1 insE1 391652 391951 - IS3 transposase A gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0380 N840_0381 N840_0381 yaiV yaiV 393556 394179 + putative DNA-binding transcriptional regulator gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0381 N840_0382 N840_0382 ampH ampH 394180 395337 - penicillin-binding protein gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0382 N840_0383 N840_0383 sbmA sbmA 395689 396909 + microcin B17 transporter sensitivity to microcin B17%2C possibly envelop protein gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0383 N840_0384 N840_0384 yaiW yaiW 396922 398016 + putative lipoprotein required for swarming phenotype gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0384 N840_0385 N840_0385 yaiY yaiY 398075 398383 - inner membrane protein%2C DUF2755 family gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0385 N840_0386 N840_0386 yaiZ yaiZ 398643 398855 + putative inner membrane protein%2C DUF2754 family gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0386 N840_0387 N840_0387 ddlA ddlA 398879 399973 - D-alanine-D-alanine ligase A gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0387 N840_0388 N840_0388 iraP iraP 400436 400695 + Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0388 N840_0389 N840_0389 phoA phoA 400796 402211 + bacterial alkaline phosphatase alkaline phosphatase%3B start codon corrected gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0389 N840_0390 N840_0390 psiF psiF 402330 402650 + conserved protein%2C PsiF family%2C pho regulon induced by phosphate starvation gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0390 N840_0391 N840_0391 yaiC yaiC 402752 403867 + diguanylate cyclase%2C cellulose regualtor gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0391 N840_0392 N840_0392 proC proC 403884 404693 - pyrroline-5-carboxylate reductase%2C NAD(P)-binding protein pyrroline-5-carboxylate reductase gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0392 N840_0393 N840_0393 yaiI yaiI 404813 405271 + conserved protein%2C UPF0178 family%2C downregulated by beryllium gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0393 N840_0394 N840_0394 aroL aroL 405454 405978 + shikimate kinase II gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0394 N840_0395 N840_0395 yaiA yaiA 406028 406219 + OxyR-regulated conserved protein gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0395 N840_0396 N840_0396 aroM aroM 406477 407154 + conserved protein%2C AroM family protein of aro operon%2C regulated by aroR gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0396 N840_0397 N840_0397 yaiE yaiE 407226 407510 + conserved protein%2C UPF0345 family gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0397 N840_0398 N840_0398 ykiA ykiA 407658 407999 + pseudogene%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0398 N840_0399 N840_0399 rdgC rdgC 408157 409068 - nucleoid-associated ssDNA and dsDNA binding protein%3B competitive inhibitor of RecA function gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0399 N840_0400 N840_0400 mak mak 409193 410101 + manno(fructo)kinase possible NAGC-like transcriptional regulator gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0400 N840_0401 N840_0401 araJ araJ 410346 411530 - arabinose-inducible predicted transporter%2C MFS family involved in either transport or processing of arabinose polymers gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0401 N840_0402 N840_0402 sbcC sbcC 411656 414802 - exonuclease%2C dsDNA%2C ATP-dependent ATP-dependent dsDNA exonuclease gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0402 N840_0403 N840_0403 sbcD sbcD 414799 416001 - exonuclease%2C dsDNA%2C ATP-dependent ATP-dependent dsDNA exonuclease gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0403 N840_0404 N840_0404 phoB phoB 416191 416880 + DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) positive response regulator for pho regulon%2C sensor is PhoR (or CreC) gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0404 N840_0405 N840_0405 phoR phoR 416938 418233 + sensory histidine kinase in two-component regulatory system with PhoB positive and negative sensor protein for pho regulon gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0405 N840_0406 N840_0406 brnQ brnQ 418640 419959 + branched-chain amino acid transport system 2 carrier protein%3B LIV-II transport system for Ile%2C Leu%2C and Val branched chain amino acid transport system II carrier protein gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0406 N840_0407 N840_0407 proY proY 420035 421408 + proline-specific permease proline permease transport protein gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0407 N840_0408 N840_0408 malZ malZ 421567 423381 + maltodextrin glucosidase gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0408 N840_0409 N840_0409 acpH acpH 423386 423967 - acpH putative glycoprotein gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0409 N840_0410 N840_0410 queA queA 424060 425130 + S-adenosylmethionine:tRNA ribosyltransferase-isomerase synthesis of queuine in tRNA%3B probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0410 N840_0411 N840_0411 tgt tgt 425186 426313 + tRNA-guanine transglycosylase gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0411 N840_0412 N840_0412 yajC yajC 426336 426668 + SecYEG protein translocase auxillary subunit gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0412 N840_0413 N840_0413 secD secD 426696 428543 + SecYEG protein translocase auxillary subunit protein secretion%3B membrane protein%2C part of the channel gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0413 N840_0414 N840_0414 secF secF 428554 429525 + SecYEG protein translocase auxillary subunit protein secretion%2C membrane protein gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0414 N840_0415 N840_0415 yajD yajD 429654 430001 + conserved protein%2C HNH family gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0415 N840_0416 N840_0416 tsx tsx 430178 431062 - nucleoside channel%2C receptor of phage T6 and colicin K nucleoside channel%3B receptor of phage T6 and colicin K gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0416 N840_0417 N840_0417 yajI yajI 431361 431900 - putative lipoprotein gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0417 N840_0418 N840_0418 nrdR nrdR 432051 432500 + nrdR gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0418 N840_0419 N840_0419 ribD ribD 432504 433607 + fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0419 N840_0420 N840_0420 ribE ribE 433696 434166 + riboflavin synthase beta chain riboflavin synthase%2C beta chain gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0420 N840_0421 N840_0421 nusB nusB 434186 434605 + transcription antitermination protein transcription termination%3B L factor gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0421 N840_0422 N840_0422 thiL thiL 434683 435660 + thiamin-monophosphate kinase gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0422 N840_0423 N840_0423 pgpA pgpA 435638 436156 + phosphatidylglycerophosphatase A phosphatidylglycerophosphatase gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0423 N840_0424 N840_0424 yajO yajO 436210 437184 - 2-carboxybenzaldehyde reductase putative NAD(P)H-dependent xylose reductase gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0424 N840_0425 N840_0425 dxs dxs 437364 439226 - 1-deoxyxylulose-5-phosphate synthase%2C thiamine-requiring%2C FAD-requiring 1-deoxyxylulose-5-phosphate synthase%3B flavoprotein gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0425 N840_0426 N840_0426 ispA ispA 439251 440150 - geranyltranstransferase gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0426 N840_0427 N840_0427 xseB xseB 440150 440392 - exonuclease VII small subunit exonuclease VII%2C small subunit gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0427 N840_0428 N840_0428 thiI thiI 440598 442046 + tRNA s(4)U8 sulfurtransferase gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0428 N840_0429 N840_0429 yajL yajL 442100 442690 - oxidative-stress-resistance chaperone gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0429 N840_0430 N840_0430 panE panE 442653 443564 - 2-dehydropantoate reductase%2C NADPH-specific 2-dehydropantoate 2-reductase gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0430 N840_0431 N840_0431 yajQ yajQ 443732 444223 + phage Phi6 host factor%2C ATP/GTP binding protein gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0431 N840_0432 N840_0432 yajR yajR 444351 445715 - putative transporter putative transport protein gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0432 N840_0433 N840_0433 cyoE cyoE 445864 446754 - protoheme IX farnesyltransferase protoheme IX farnesyltransferase (haeme O biosynthesis) gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0433 N840_0434 N840_0434 cyoD cyoD 446766 447095 - cytochrome o ubiquinol oxidase subunit IV gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0434 N840_0435 N840_0435 cyoC cyoC 447095 447709 - cytochrome o ubiquinol oxidase subunit III gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0435 N840_0436 N840_0436 cyoB cyoB 447699 449690 - cytochrome o ubiquinol oxidase subunit I gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0436 N840_0437 N840_0437 cyoA cyoA 449712 450659 - cytochrome o ubiquinol oxidase subunit II gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0437 N840_0438 N840_0438 ampG ampG 451119 452594 - muropeptide transporter regulates beta-lactamase synthesis gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0438 N840_0439 N840_0439 yajG yajG 452638 453216 - putative lipoprotein putative polymerase/proteinase gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0439 N840_0440 N840_0440 bolA bolA 453521 453838 + stationary-phase morphogene%2C transcriptional repressor for mreB%3B also regulator for dacA%2C dacC%2C and ampC possible regulator of murein genes gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0440 N840_0441 N840_0441 tig tig 454182 455480 + peptidyl-prolyl cis/trans isomerase (trigger factor) trigger factor%3B a molecular chaperone involved in cell division gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0441 N840_0442 N840_0442 clpP clpP 455726 456349 + proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases ATP-dependent proteolytic subunit of clpA-clpP serine protease%2C heat shock protein F21.5 gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0442 N840_0443 N840_0443 clpX clpX 456475 457749 + ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease ATP-dependent specificity component of clpP serine protease%2C chaperone gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0443 N840_0444 N840_0444 lon lon 457937 460291 + DNA-binding ATP-dependent protease La DNA-binding%2C ATP-dependent protease La%3B heat shock K-protein gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0444 N840_0445 N840_0445 hupB hupB 460500 460772 + HU%2C DNA-binding transcriptional regulator%2C beta subunit DNA-binding protein HU-beta%2C NS1 (HU-1) gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0445 N840_0446 N840_0446 ppiD ppiD 460964 462835 + periplasmic folding chaperone%2C has an inactive PPIase domain protein gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0446 N840_0447 N840_0447 ybaV ybaV 462986 463357 + conserved protein%2C ComEA-like protein gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0447 N840_0448 N840_0448 fadM fadM 463451 463849 + long-chain acyl-CoA thioesterase III gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0448 N840_0449 N840_0449 queC queC 463901 464596 - 7-cyano-7-deazaguanine (preQ0) synthase%3B queuosine biosynthesis gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0449 N840_0450 N840_0450 ybaE ybaE 464661 466361 - putative transporter subunit: periplasmic-binding component of ABC superfamily gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0450 N840_0451 N840_0451 cof cof 466461 467279 + thiamin pyrimidine pyrophosphate hydrolase%3B HMP-PP phosphatase gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0451 N840_0452 N840_0452 ybaO ybaO 467432 467890 + putative DNA-binding transcriptional regulator putative LRP-like transcriptional regulator gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0452 N840_0453 N840_0453 mdlA mdlA 467920 469692 + fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0453 N840_0454 N840_0454 mdlB mdlB 469685 471466 + fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0454 N840_0455 N840_0455 glnK glnK 471647 471985 + nitrogen assimilation regulatory protein for GlnL%2C GlnE%2C and AmtB nitrogen regulatory protein P-II 2 gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0455 N840_0456 N840_0456 amtB amtB 472015 473301 + ammonium transporter probable ammonium transporter gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0456 N840_0457 N840_0457 tesB tesB 473350 474210 - acyl-CoA thioesterase II gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0457 N840_0458 N840_0458 ybaY ybaY 474428 475000 + outer membrane lipoprotein glycoprotein/polysaccharide metabolism gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0458 N840_0459 N840_0459 ybaZ ybaZ 475031 475420 - excision repair protein%2C alkyltransferase-like protein ATL gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0459 N840_0460 N840_0460 ffs ffs 475497 475610 + 4.5S sRNA component of Signal Recognition Particle (SRP) 4.5S RNA%3B component of ribonucleoprotein particle%3B works with the Ffh protein%3B adjusted endpoints to reflect the mature 4.5S RNA (114 nt) gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0460 N840_0461 N840_0461 ybaA ybaA 475721 476074 + conserved protein%2C DUF1428 family gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0461 N840_0462 N840_0462 ylaB ylaB 476116 477666 - putative membrane-anchored cyclic-di-GMP phosphodiesterase gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0462 N840_0463 N840_0463 ylaC ylaC 477830 478300 - inner membrane protein%2C DUF1449 family gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0463 N840_0464 N840_0464 maa maa 478416 478967 - maltose O-acetyltransferase gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0464 N840_0465 N840_0465 hha hha 479139 479357 - modulator of gene expression%2C with H-NS haemolysin expression modulating protein gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0465 N840_0466 N840_0466 tomB tomB 479383 479757 - Hha toxicity attenuator%3B conjugation-related protein gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0466 N840_0467 N840_0467 acrB acrB 480303 483452 - multidrug efflux system protein acridine efflux pump gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0467 N840_0468 N840_0468 acrA acrA 483475 484668 - multidrug efflux system acridine efflux pump gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0468 N840_0469 N840_0469 acrR acrR 484810 485457 + DNA-binding transcriptional repressor acrAB operon repressor gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0469 N840_0470 N840_0470 mscK mscK 485585 488947 + mechanosensitive channel protein%2C intermediate conductance%2C K+ regulated mechanosensitive channel protein gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0470 N840_0471 N840_0471 ybaM ybaM 489159 489320 - ybaM gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0471 N840_0472 N840_0472 priC priC 489334 489861 - primosomal replication protein N'' gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0472 N840_0473 N840_0473 ybaN ybaN 489931 490308 + inner membrane protein%2C DUF454 family putative gene 58 gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0473 N840_0474 N840_0474 apt apt 490461 491012 + adenine phosphoribosyltransferase gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0474 N840_0475 N840_0475 dnaX dnaX 491141 493072 + DNA polymerase III/DNA elongation factor III%2C tau and gamma subunits DNA polymerase III%2C tau and gamma subunits%3B DNA elongation factor III gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0475 N840_0476 N840_0476 ybaB ybaB 493125 493454 + ybaB gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0476 N840_0477 N840_0477 recR recR 493454 494059 + gap repair protein recombination and repair gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0477 N840_0478 N840_0478 htpG htpG 494169 496043 + protein refolding molecular co-chaperone Hsp90%2C Hsp70-dependent%3B heat-shock protein%3B ATPase chaperone Hsp90%2C heat shock protein C 62.5 gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0478 N840_0479 N840_0479 adk adk 496224 496868 + adenylate kinase adenylate kinase activity%3B pleiotropic effects on glycerol-3-phosphate acyltransferase activity gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0479 N840_0480 N840_0480 hemH hemH 497104 498066 + ferrochelatase ferrochelatase: final enzyme of heme biosynthesis gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0480 N840_0481 N840_0481 aes aes 498063 499022 - acetyl esterase gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0481 N840_0482 N840_0482 gsk gsk 499174 500478 + inosine/guanosine kinase inosine-guanosine kinase gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0482 N840_0483 N840_0483 ybaL ybaL 500611 502287 - putative transporter with NAD(P)-binding Rossmann-fold domain putative transport protein gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0483 N840_0484 N840_0484 fsr fsr 502525 503745 - putative fosmidomycin efflux system fosmidomycin resistance protein gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0484 N840_0485 N840_0485 ushA ushA 503963 505615 + bifunctional UDP-sugar hydrolase/5'-nucleotidase UDP-sugar hydrolase (5'-nucleotidase) gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0485 N840_0486 N840_0486 ybaK ybaK 505652 506131 - ybaK gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0486 N840_0487 N840_0487 chiX chiX 506253 506336 + sRNA antisense regulator of OM chitoporin ChiP(YbfM)%2C Hfq-dependent gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0487 N840_0488 N840_0488 ybaP ybaP 506335 507129 - conserved protein%2C TraB family putative ligase gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0488 N840_0489 N840_0489 ybaQ ybaQ 507267 507608 + putative DNA-binding transcriptional regulator gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0489 N840_0490 N840_0490 copA copA 507924 510428 - copper transporter gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0490 N840_0491 N840_0491 glsA glsA 510690 511622 + glutaminase 1 putative glutaminase gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0491 N840_0492 N840_0492 ybaT ybaT 511625 512917 + putative amino acid transporter putative amino acid/amine transport protein gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0492 N840_0493 N840_0493 cueR cueR 513042 513449 + DNA-binding transcriptional activator of copper-responsive regulon genes gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0493 N840_0494 N840_0494 ybbJ ybbJ 513450 513908 - inner membrane protein that stimulates the ftsH htpX mutant suppressor activity of QmcA gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0494 N840_0495 N840_0495 qmcA qmcA 513905 514822 - multicopy suppressor of ftsH htpX double mutant%3B membrane-anchored predicted protease with C-terminal cytoplasmic PHB domain putative protease gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0495 N840_0496 N840_0496 ybbL ybbL 514968 515645 + putative transporter subunit: ATP-binding component of ABC superfamily putative ATP-binding component of a transport system gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0496 N840_0497 N840_0497 ybbM ybbM 515632 516411 + inner membrane protein%2C UPF0014 family putative metal resistance protein gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0497 N840_0498 N840_0498 ybbN ybbN 516474 517328 - DnaK co-chaperone%2C thioredoxin-like protein putative thioredoxin-like protein gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0498 N840_0499 N840_0499 ybbO ybbO 517389 518198 - putative oxidoreductase with NAD(P)-binding Rossmann-fold domain putative oxidoreductase gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0499 N840_0500 N840_0500 tesA tesA 518188 518814 - multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 acyl-CoA thioesterase I%3B also functions as protease I gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0500 N840_0501 N840_0501 ybbA ybbA 518782 519468 + putative transporter subunit: ATP-binding component of ABC superfamily putative ATP-binding component of a transport system gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0501 N840_0502 N840_0502 ybbP ybbP 519465 521879 + putative ABC transporter permease putative oxidoreductase gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0502 N840_0503 N840_0503 rhsD rhsD 522310 526590 + rhsD element protein rhsD protein in rhs element gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0503 N840_0504 N840_0504 ybbC ybbC 526630 526998 + ybbC gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0504 N840_0505 N840_0505 ylbH ylbH 527001 527708 + pseudogene%2C rhs-like pseudogene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0505 N840_0506 N840_0506 ybbD ybbD 527689 528179 + pseudogene%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0506 N840_0507 N840_0507 ylbI ylbI 528549 528641 + pseudogene%2C Rhs family%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0507 N840_0508 N840_0508 ylbG ylbG 528644 529065 - pseudogene%2C DNA-binding transcriptional regulator homology%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0508 N840_0509 N840_0509 selU selU 529181 530275 - tRNA 2-selenouridine synthase%2C selenophosphate-dependent putative capsule anchoring protein gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0509 N840_0510 N840_0510 allS allS 530344 531270 - DNA-binding transcriptional activator of the allD operon putative transcriptional regulator LYSR-type gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0510 N840_0511 N840_0511 allA allA 531500 531982 + ureidoglycolate hydrolase gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0511 N840_0512 N840_0512 allR allR 532060 532875 + DNA-binding transcriptional repressor for all (allantoin) and gcl (glyoxylate) operons%3B glyoxylate-induced gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0512 N840_0513 N840_0513 gcl gcl 532965 534746 + glyoxylate carboligase gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0513 N840_0514 N840_0514 hyi hyi 534759 535535 + hydroxypyruvate isomerase gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0514 N840_0515 N840_0515 glxR glxR 535635 536513 + tartronate semialdehyde reductase%2C NADH-dependent gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0515 N840_0516 N840_0516 ybbW ybbW 536682 538136 + putative allantoin transporter gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0516 N840_0517 N840_0517 allB allB 538196 539557 + allantoinase gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0517 N840_0518 N840_0518 ybbY ybbY 539614 540915 + putative uracil/xanthine transporter gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0518 N840_0519 N840_0519 glxK glxK 540937 542082 + glycerate kinase II gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0519 N840_0520 N840_0520 ylbA ylbA 542310 543095 - ylbA gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0520 N840_0521 N840_0521 allC allC 543106 544341 - allantoate amidohydrolase gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0521 N840_0522 N840_0522 allD allD 544363 545412 - ureidoglycolate dehydrogenase gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0522 N840_0523 N840_0523 fdrA fdrA 545729 547396 + multicopy suppressor of dominant negative ftsH mutations%3B predicted acyl-CoA synthetase with NAD(P)-binding Rossmann-fold domain involved in protein transport%3B multicopy suppressor of dominant negative ftsH mutants gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0523 N840_0524 N840_0524 ylbE ylbE 547406 548665 + putative protein%2C C-ter fragment (pseudogene)%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0524 N840_0525 N840_0525 ylbF ylbF 548676 549491 + ylbF putative carboxylase gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0525 N840_0526 N840_0526 ybcF ybcF 549488 550381 + putative carbamate kinase gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0526 N840_0527 N840_0527 purK purK 550576 551643 - N5-carboxyaminoimidazole ribonucleotide synthase phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C CO(2)-fixing subunit gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0527 N840_0528 N840_0528 purE purE 551640 552149 - N5-carboxyaminoimidazole ribonucleotide mutase phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C catalytic subunit gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0528 N840_0529 N840_0529 lpxH lpxH 552267 552989 - UDP-2%2C3-diacylglucosamine pyrophosphatase gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0529 N840_0530 N840_0530 ppiB ppiB 552992 553486 - peptidyl-prolyl cis-trans isomerase B (rotamase B) gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0530 N840_0531 N840_0531 cysS cysS 553660 555045 + cysteinyl-tRNA synthetase cysteine tRNA synthetase gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0531 N840_0532 N840_0532 ybcI ybcI 555081 555602 - inner membrane protein%2C DUF457 family gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0532 N840_0533 N840_0533 ybcJ ybcJ 555710 555922 - ribosome-associated protein%3B predicted RNA-binding protein gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0533 N840_0534 N840_0534 folD folD 555924 556790 - bifunctional 5%2C10-methylene-tetrahydrofolate dehydrogenase/ 5%2C10-methylene-tetrahydrofolate cyclohydrolase 5%2C10-methylene-tetrahydrofolate dehydrogenase%3B 5%2C10-methylene-tetrahydrofolate cyclohydrolase gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0534 N840_0535 N840_0535 sfmA sfmA 557261 557803 + putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0535 N840_0536 N840_0536 sfmC sfmC 558023 558715 + pilin chaperone%2C periplasmic putative chaperone gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0536 N840_0537 N840_0537 sfmD sfmD 558746 561349 + putative outer membrane export usher protein putative outer membrane protein%2C export function gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0537 N840_0538 N840_0538 sfmH sfmH 561385 562368 + putative fimbrial-like adhesin protein involved in fimbrial asembly gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0538 N840_0539 N840_0539 sfmF sfmF 562379 562894 + putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0539 N840_0540 N840_0540 fimZ fimZ 562897 563529 - putative DNA-binding transcriptional regulator fimbrial Z protein%3B probable signal transducer gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0540 N840_0541 N840_0541 argU argU 563772 563848 + tRNA-Arg anticodon: UCU tRNA gene541 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0541 N840_0542 N840_0542 intD intD 563864 565027 - DLP12 prophage%3B predicted integrase prophage DLP12 integrase gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0542 N840_0543 N840_0543 xisD xisD 564907 565128 - pseudogene%2C exisionase in defective prophage DLP12%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0543 N840_0544 N840_0544 exoD exoD 565147 565425 - pseudogene%2C DLP12 prophage%3B predicted exonuclease%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0544 N840_0545 N840_0545 peaD peaD 565425 565736 + DLP12 prophage%3B predicted replication protein fragment (pseudogene)%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0545 N840_0546 N840_0546 renD renD 565733 567296 + pseudogene%2C DLP12 prophage%3BPhage or Prophage Related pseudogene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0546 N840_0547 N840_0547 insE1 insE1 565891 566190 + IS3 transposase A gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0547 N840_0548 N840_0548 insF1 insF1 566187 567053 + IS3 transposase B gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0548 N840_0549 N840_0549 emrE emrE 567364 567696 + DLP12 prophage%3B multidrug resistance protein methylviologen resistance gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0549 N840_0550 N840_0550 ybcK ybcK 567951 569477 + DLP12 prophage%3B predicted recombinase gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0550 N840_0551 N840_0551 ybcL ybcL 569942 570493 + DLP12 prophage%3B secreted protein%2C UPF0098 family gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0551 N840_0552 N840_0552 ybcM ybcM 570503 571300 + DLP12 prophage%3B predicted DNA-binding transcriptional regulator putative ARAC-type regulatory protein gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0552 N840_0553 N840_0553 ylcH ylcH 571417 571518 + putative prophage protein DLP12 prophage gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0553 N840_0554 N840_0554 ybcN ybcN 571515 571970 + DLP12 prophage%3B putative protein gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0554 N840_0555 N840_0555 ninE ninE 571970 572140 + DLP12 prophage%3B conserved protein similar to phage 82 and lambda proteins gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0555 N840_0556 N840_0556 ybcO ybcO 572133 572423 + DLP12 prophage%3B putative protein gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0556 N840_0557 N840_0557 rusA rusA 572420 572782 + DLP12 prophage%3B endonuclease RUS endodeoxyribonuclease RUS (Holliday junction resolvase) gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0557 N840_0558 N840_0558 ylcG ylcG 572779 572919 + expressed protein%2C DLP12 prophage gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0558 N840_0559 N840_0559 quuD quuD 573005 573388 + DLP12 prophage%3B predicted antitermination protein gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0559 N840_0560 N840_0560 nmpC nmpC 573578 575874 - DLP12 prophage%3B truncated outer membrane porin (pseudogene)%3BIS%2C phage%2C Tn%3B Phage or Prophage Related%3B outer membrane porin protein%3B locus of qsr prophage pseudogene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0560 N840_0561 N840_0561 insH1 insH1 573786 574802 - IS5 transposase and trans-activator gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0561 N840_0562 N840_0562 essD essD 576447 576662 + DLP12 prophage%3B predicted phage lysis protein gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0562 N840_0563 N840_0563 rrrD rrrD 576662 577159 + DLP12 prophage%3B predicted lysozyme bacteriophage lambda lysozyme homolog gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0563 N840_0564 N840_0564 rzpD rzpD 577156 577617 + DLP12 prophage%3B predicted murein endopeptidase bacteriophage lambda endopeptidase homolog gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0564 N840_0565 N840_0565 rzoD rzoD 577376 577558 + DLP12 prophage%3B predicted lipoprotein gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0565 N840_0566 N840_0566 borD borD 577649 577942 - DLP12 prophage%3B predicted lipoprotein bacteriophage lambda Bor protein homolog gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0566 N840_0567 N840_0567 ybcV ybcV 578233 578643 - DLP12 prophage%3B putative protein putative an envelop protein gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0567 N840_0568 N840_0568 ybcW ybcW 578929 579135 + DLP12 prophage%3B putative protein gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0568 N840_0569 N840_0569 ylcI ylcI 579300 579494 - ylcI gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0569 N840_0570 N840_0570 nohD nohD 579883 580428 + DLP12 prophage%3B DNA packaging protein bacteriophage DNA packaging protein gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0570 N840_0571 N840_0571 aaaD aaaD 580403 580711 + DLP12 prophage%3B predicted tail fiber assembly protein (pseudogene)%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0571 N840_0572 N840_0572 tfaD tfaD 580709 581146 + pseudogene%2C DLP12 prophage%3B predicted tail fiber assembly protein%3BPhage or Prophage Related pseudogene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0572 N840_0573 N840_0573 ybcY ybcY 581200 581854 - pseudogene%2C DLP12 prophage%3B methyltransferase homology%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0573 N840_0574 N840_0574 tfaX tfaX 582001 582183 + pseudogene%2C DLP12 prophage%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0574 N840_0575 N840_0575 appY appY 582729 583478 + DNA-binding global transcriptional activator%3B DLP12 prophage regulatory protein affecting appA and other genes gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0575 N840_0576 N840_0576 ompT ompT 583728 584681 - DLP12 prophage%3B outer membrane protease VII (outer membrane protein 3b) outer membrane protein 3b (a)%2C protease VII gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0576 N840_0577 N840_0577 pauD pauD 585105 585149 + tRNA-OTHER pseudogenic_tRNA gene577 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0577 N840_0578 N840_0578 envY envY 585195 585956 - DNA-binding transcriptional activator of porin biosynthesis envelope protein%3B thermoregulation of porin biosynthesis gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0578 N840_0579 N840_0579 ybcH ybcH 586139 587029 - ybcH gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0579 N840_0580 N840_0580 nfrA nfrA 587030 590002 - bacteriophage N4 receptor%2C outer membrane subunit bacteriophage N4 receptor%2C outer membrane protein gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0580 N840_0581 N840_0581 nfrB nfrB 589989 592226 - bacteriophage N4 receptor%2C inner membrane subunit bacteriophage N4 receptor%2C subunit%2C inner membrane protein gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0581 N840_0582 N840_0582 cusS cusS 592376 593818 - sensory histidine kinase in two-component regulatory system with CusR%2C senses copper ions gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0582 N840_0583 N840_0583 cusR cusR 593808 594491 - DNA-binding response regulator in two-component regulatory system with CusS gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0583 N840_0584 N840_0584 cusC cusC 594648 596021 + copper/silver efflux system%2C outer membrane component gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0584 N840_0585 N840_0585 cusF cusF 596179 596511 + periplasmic copper- and silver-binding protein gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0585 N840_0586 N840_0586 cusB cusB 596527 597750 + copper/silver efflux system%2C membrane fusion protein gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0586 N840_0587 N840_0587 cusA cusA 597762 600905 + copper/silver efflux system%2C membrane component gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0587 N840_0588 N840_0588 pheP pheP 601007 602383 + phenylalanine transporter phenylalanine-specific transport system gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0588 N840_0589 N840_0589 ybdG ybdG 602464 603711 - mechanosensitive channel protein%2C miniconductance putative transport gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0589 N840_0590 N840_0590 nfsB nfsB 603819 604472 - dihydropteridine reductase%2C NAD(P)H-dependent%2C oxygen-insensitive oxygen-insensitive NAD(P)H nitroreductase gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0590 N840_0591 N840_0591 ybdF ybdF 604566 604934 - ybdF gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0591 N840_0592 N840_0592 ybdJ ybdJ 604999 605247 - putative inner membrane protein gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0592 N840_0593 N840_0593 ybdK ybdK 605313 606431 - weak gamma-glutamyl:cysteine ligase gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0593 N840_0594 N840_0594 sokE sokE 606782 606840 + sRNA at remnant mokE/hokE locus gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0594 N840_0595 N840_0595 hokE hokE 606884 607036 + toxic polypeptide%2C small small toxic membrane polypeptide%3B the corresponding mokE lacks a start codon%2C and the regulatory RNA sokE has not been identified gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0595 N840_0596 N840_0596 insL1 insL1 607113 608225 + IS186 transposase gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0596 N840_0597 N840_0597 entD entD 608507 609127 - phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex enterochelin synthetase%2C component D gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0597 N840_0598 N840_0598 fepA fepA 609302 611542 - iron-enterobactin outer membrane transporter outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0598 N840_0599 N840_0599 fes fes 611863 612987 + enterobactin/ferric enterobactin esterase enterochelin esterase gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0599 N840_0600 N840_0600 ybdZ ybdZ 612990 613208 + stimulator of EntF adenylation activity%2C MbtH-like protein gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0600 N840_0601 N840_0601 entF entF 613205 617086 + enterobactin synthase multienzyme complex component%2C ATP-dependent ATP-dependent serine activating enzyme (may be part of enterobactin synthase as component F) gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0601 N840_0602 N840_0602 fepE fepE 617302 618435 + regulator of length of O-antigen component of lipopolysaccharide chains ferric enterobactin (enterochelin) transport gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0602 N840_0603 N840_0603 fepC fepC 618432 619247 - iron-enterobactin transporter subunit ATP-binding component of ferric enterobactin transport gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0603 N840_0604 N840_0604 fepG fepG 619244 620236 - iron-enterobactin transporter subunit ferric enterobactin transport protein%3B membrane component of ABC superfamily gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0604 N840_0605 N840_0605 fepD fepD 620233 621237 - iron-enterobactin transporter subunit ferric enterobactin (enterochelin) transport%3B membrane component of ABC superfamily gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0605 N840_0606 N840_0606 entS entS 621348 622598 + enterobactin exporter%2C iron-regulated putative transport gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0606 N840_0607 N840_0607 fepB fepB 622602 623558 - iron-enterobactin transporter subunit ferric enterobactin (enterochelin) binding protein%3B periplasmic component%3B periplasmic-binding component of ABC superfamily gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0607 N840_0608 N840_0608 entC entC 623933 625108 + isochorismate synthase 1 isochorismate hydroxymutase 2%2C enterochelin biosynthesis gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0608 N840_0609 N840_0609 entE entE 625118 626728 + 2%2C3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex 2%2C3-dihydroxybenzoate-AMP ligase gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0609 N840_0610 N840_0610 entB entB 626742 627599 + isochorismatase 2%2C3-dihydro-2%2C3-dihydroxybenzoate synthetase%2C isochroismatase gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0610 N840_0611 N840_0611 entA entA 627599 628345 + 2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase 2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase%2C enterochelin biosynthesis gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0611 N840_0612 N840_0612 entH entH 628348 628761 + thioesterase required for efficient enterobactin production gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0612 N840_0613 N840_0613 cstA cstA 628942 631047 + carbon starvation protein gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0613 N840_0614 N840_0614 ybdD ybdD 631230 631427 + conserved protein%2C DUF466 family gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0614 N840_0615 N840_0615 ybdH ybdH 631437 632525 - putative oxidoreductase gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0615 N840_0616 N840_0616 ybdL ybdL 632634 633794 + methionine aminotransferase%2C PLP-dependent PLP-dependent methionine aminotransferase gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0616 N840_0617 N840_0617 ybdM ybdM 633795 634424 - ybdM gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0617 N840_0618 N840_0618 ybdN ybdN 634397 635617 - ybdN gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0618 N840_0619 N840_0619 ybdO ybdO 635764 636666 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0619 N840_0620 N840_0620 dsbG dsbG 636875 637621 - thiol:disulfide interchange protein%2C periplasmic thiol:disulfide interchange protein gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0620 N840_0621 N840_0621 ahpC ahpC 637993 638556 + alkyl hydroperoxide reductase%2C C22 subunit alkyl hydroperoxide reductase%2C C22 subunit%3B detoxification of hydroperoxides gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0621 N840_0622 N840_0622 ahpF ahpF 638801 640366 + alkyl hydroperoxide reductase%2C F52a subunit%2C FAD/NAD(P)-binding protein alkyl hydroperoxide reductase%2C F52a subunit%3B detoxification of hydroperoxides gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0622 N840_0623 N840_0623 uspG uspG 640487 640915 - universal stress protein UP12 gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0623 N840_0624 N840_0624 ybdR ybdR 641136 642374 + putative oxidoreductase%2C Zn-dependent and NAD(P)-binding protein putative oxidoreductase gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0624 N840_0625 N840_0625 rnk rnk 642605 643015 - regulator of nucleoside diphosphate kinase gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0625 N840_0626 N840_0626 rna rna 643245 644051 - ribonuclease I RNase I%2C cleaves phosphodiester bond between any two nucleotides gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0626 N840_0627 N840_0627 citT citT 644165 645628 - citrate:succinate antiporter gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0627 N840_0628 N840_0628 citG citG 645679 646557 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0628 N840_0629 N840_0629 citX citX 646532 647083 - apo-citrate lyase phosphoribosyl-dephospho-CoA transferase gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0629 N840_0630 N840_0630 citF citF 647087 648619 - citrate lyase%2C citrate-ACP transferase (alpha) subunit citrate lyase alpha chain gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0630 N840_0631 N840_0631 citE citE 648630 649538 - citrate lyase%2C citryl-ACP lyase (beta) subunit gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0631 N840_0632 N840_0632 citD citD 649535 649831 - citrate lyase%2C acyl carrier (gamma) subunit citrate lyase acyl carrier protein (gamma chain) gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0632 N840_0633 N840_0633 citC citC 649846 650904 - [citrate [pro-3S]-lyase] ligase citrate lyase synthetase (citrate (pro-3S)-lyase ligase gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0633 N840_0634 N840_0634 dpiB dpiB 651283 652941 + sensory histidine kinase in two-component regulatory system with citB putative sensor-type protein gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0634 N840_0635 N840_0635 dpiA dpiA 652910 653590 + DNA-binding response regulator in two-component regulatory system with citA sequence similarity to Shigella regulator gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0635 N840_0636 N840_0636 dcuC dcuC 653631 655016 - anaerobic C4-dicarboxylate transport transport of dicarboxylates gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0636 N840_0637 N840_0637 pagP pagP 655605 656165 + phospholipid:lipid A palmitoyltransferase gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0637 N840_0638 N840_0638 cspE cspE 656340 656549 + DNA-binding transcriptional repressor cold shock protein gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0638 N840_0639 N840_0639 crcB crcB 656603 656986 - putative fluoride exporter%3B inner membrane protein associated with chromosome condensation gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0639 N840_0640 N840_0640 ybeM ybeM 657079 657866 + pseudogene%2C C-N hydrolase superfamily homology%3Bputative enzyme%3B Not classified%3B putative amidase pseudogene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0640 N840_0641 N840_0641 tatE tatE 657995 658198 + TatABCE protein translocation system subunit gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0641 N840_0642 N840_0642 lipA lipA 658299 659264 - lipoate synthase lipoate synthesis%2C sulfur insertion? gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0642 N840_0643 N840_0643 ybeF ybeF 659473 660426 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0643 N840_0644 N840_0644 lipB lipB 660685 661326 - octanoyltransferase%3B octanoyl-[ACP]:protein N-octanoyltransferase protein of lipoate biosynthesis gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0644 N840_0645 N840_0645 ybeD ybeD 661427 661690 - conserved protein%2C UPF0250 family gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0645 N840_0646 N840_0646 dacA dacA 661800 663011 - D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) D-alanyl-D-alanine carboxypeptidase%2C fraction A%3B penicillin-binding protein 5 gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0646 N840_0647 N840_0647 rlpA rlpA 663150 664238 - septal ring protein%2C suppressor of prc%2C minor lipoprotein a minor lipoprotein gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0647 N840_0648 N840_0648 mrdB mrdB 664249 665361 - cell wall shape-determining protein rod shape-determining membrane protein%3B sensitivity to radiation and drugs gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0648 N840_0649 N840_0649 mrdA mrdA 665364 667265 - transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) cell elongation%2C e phase%3B peptidoglycan synthetase%3B penicillin-binding protein 2 gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0649 N840_0650 N840_0650 rlmH rlmH 667296 667763 - 23S rRNA m(3)Psi1915 pseudouridine methyltransferase%2C SAM-dependent gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0650 N840_0651 N840_0651 rsfS rsfS 667767 668084 - ribosomal silencing factor gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0651 N840_0652 N840_0652 cobC cobC 668344 668955 - putative alpha-ribazole-5'-P phosphatase homolog of Salmonella cobC%2C a phosphohistidine protein gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0652 N840_0653 N840_0653 nadD nadD 668979 669620 - nicotinic acid mononucleotide adenylyltransferase%2C NAD(P)-dependent gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0653 N840_0654 N840_0654 holA holA 669622 670653 - DNA polymerase III%2C delta subunit gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0654 N840_0655 N840_0655 lptE lptE 670653 671234 - LPS assembly OM complex LptDE%2C lipoprotein component a minor lipoprotein gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0655 N840_0656 N840_0656 leuS leuS 671249 673831 - leucyl-tRNA synthetase leucine tRNA synthetase gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0656 N840_0657 N840_0657 ybeL ybeL 674066 674548 + conserved protein%2C DUF1451 family putative alpha helical protein gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0657 N840_0658 N840_0658 ybeQ ybeQ 674618 675594 - Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0658 N840_0659 N840_0659 ybeR ybeR 675758 676465 + ybeR gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0659 N840_0660 N840_0660 djlB djlB 676462 677889 + putative co-chaperone putative enzyme of polynucleotide modification gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0660 N840_0661 N840_0661 ybeT ybeT 677899 678453 - conserved protein%2C Sel1 family gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0661 N840_0662 N840_0662 ybeU ybeU 678555 679262 + conserved protein%2C DUF1266 family putative tRNA ligase gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0662 N840_0663 N840_0663 djlC djlC 679259 680710 + Hsc56 co-chaperone of HscC gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0663 N840_0664 N840_0664 hscC hscC 680770 682440 - Hsp70 family chaperone Hsc62%2C binds to RpoD and inhibits transcription gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0664 N840_0665 N840_0665 rihA rihA 682524 683459 - ribonucleoside hydrolase 1 gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0665 N840_0666 N840_0666 gltL gltL 683577 684302 - glutamate%2C aspartate ABC transporter ATP-binding subunit ATP-binding protein of glutamate/aspartate transport system gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0666 N840_0667 N840_0667 gltK gltK 684302 684976 - glutamate%2C aspartate ABC transporter permease subunit glutamate/aspartate transport system permease%3B membrane component of ABC superfamily gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0667 N840_0668 N840_0668 gltJ gltJ 684976 685716 - glutamate%2C aspartate ABC transporter permease subunit glutamate/aspartate transport system permease%3B membrane component of ABC superfamily gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0668 N840_0669 N840_0669 gltI gltI 685886 686794 - glutamate%2C aspartate binding protein%2C periplasmic%3B part of GltJKLI ABC transporter periplasmic-binding component of ABC superfamily gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0669 N840_0670 N840_0670 insH1 insH1 687044 688060 - IS5 transposase and trans-activator gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0670 N840_0671 N840_0671 lnt lnt 688390 689928 - apolipoprotein N-acyltransferase apolipoprotein N-acyltransferase%2C copper homeostasis protein%2C inner membrane gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0671 N840_0672 N840_0672 ybeX ybeX 689953 690831 - predicteed ion transport putative transport protein gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0672 N840_0673 N840_0673 ybeY ybeY 690921 691388 - metal-binding heat shock protein required for rRNA maturation gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0673 N840_0674 N840_0674 ybeZ ybeZ 691385 692425 - putative protein with nucleoside triphosphate hydrolase domain putative ATP-binding protein in pho regulon gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0674 N840_0675 N840_0675 miaB miaB 692578 694002 - tRNA-i(6)A37 methylthiotransferase gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0675 N840_0676 N840_0676 ubiF ubiF 694148 695323 + 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol oxygenase gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0676 N840_0677 N840_0677 glnX glnX 695477 695551 - tRNA-Gln anticodon: CUG tRNA gene677 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0677 N840_0678 N840_0678 glnV glnV 695589 695663 - tRNA-Gln anticodon: CUG tRNA gene678 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0678 N840_0679 N840_0679 metU metU 695711 695787 - tRNA-Met anticodon: CAU tRNA gene679 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0679 N840_0680 N840_0680 glnW glnW 695803 695877 - tRNA-Gln anticodon: UUG tRNA gene680 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0680 N840_0681 N840_0681 glnU glnU 695912 695986 - tRNA-Gln anticodon: UUG tRNA gene681 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0681 N840_0682 N840_0682 leuW leuW 696010 696094 - tRNA-Leu anticodon: CAA tRNA gene682 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0682 N840_0683 N840_0683 metT metT 696104 696180 - tRNA-Met anticodon: CAU tRNA gene683 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0683 N840_0684 N840_0684 asnB asnB 696560 698224 - asparagine synthetase B gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0684 N840_0685 N840_0685 nagD nagD 698621 699373 - UMP phosphatase N-acetylglucosamine metabolism gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0685 N840_0686 N840_0686 nagC nagC 699421 700641 - DNA-binding transcriptional dual regulator%2C repressor of N-acetylglucosamine transcriptional repressor of nag (N-acetylglucosamine) operon gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0686 N840_0687 N840_0687 nagA nagA 700650 701798 - N-acetylglucosamine-6-phosphate deacetylase gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0687 N840_0688 N840_0688 nagB nagB 701858 702658 - glucosamine-6-phosphate deaminase gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0688 N840_0689 N840_0689 nagE nagE 702991 704937 + fused N-acetyl glucosamine specific PTS enzyme: IIC%2C IIB%2C and IIA components PTS system%2C N-acetylglucosamine-specific enzyme IIABC gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0689 N840_0690 N840_0690 glnS glnS 705140 706804 + glutamyl-tRNA synthetase glutamine tRNA synthetase gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0690 N840_0691 N840_0691 chiP chiP 707381 708787 + chitoporin%2C uptake of chitosugars gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0691 N840_0692 N840_0692 chiQ chiQ 708837 709163 + putative lipoprotein induced by chitosugars gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0692 N840_0693 N840_0693 fur fur 709247 709693 - DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport negative regulator gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0693 N840_0694 N840_0694 uof uof 709686 709772 - ryhB-regulated fur leader peptide gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0694 N840_0695 N840_0695 fldA fldA 709982 710512 - flavodoxin 1 gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0695 N840_0696 N840_0696 ybfE ybfE 710652 710945 - conserved protein%2C LexA-regulated gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0696 N840_0697 N840_0697 ybfF ybfF 711085 711849 - acyl-CoA esterase gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0697 N840_0698 N840_0698 seqA seqA 712034 712579 + regulatory protein for replication initiation negative modulator of initiation of replication gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0698 N840_0699 N840_0699 pgm pgm 712605 714245 + phosphoglucomutase gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0699 N840_0700 N840_0700 ybfP ybfP 714459 714953 + lipoprotein putative pectinase gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0700 N840_0701 N840_0701 ybfG ybfG 714994 715644 - pseudogene pseudogene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0701 N840_0702 N840_0702 ybfI ybfI 715768 715917 - pseudogene%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0702 N840_0703 N840_0703 potE potE 715993 717312 - putrescine/proton symporter: putrescine/ornithine antiporter putrescine transport protein gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0703 N840_0704 N840_0704 speF speF 717309 719507 - ornithine decarboxylase isozyme%2C inducible gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0704 N840_0705 N840_0705 ybfK ybfK 719630 719887 + ybfK gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0705 N840_0706 N840_0706 kdpE kdpE 720103 720780 - DNA-binding response regulator in two-component regulatory system with KdpD regulator of kdp operon (transcriptional effector) gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0706 N840_0707 N840_0707 kdpD kdpD 720777 723462 - sensor for high-affinity potassium transport system%3B sensory histidine kinase%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0707 N840_0708 N840_0708 kdpC kdpC 723455 724027 - potassium translocating ATPase%2C subunit C high-affinity potassium transport system gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0708 N840_0709 N840_0709 kdpB kdpB 724036 726084 - potassium translocating ATPase%2C subunit B ATPase of high-affinity potassium transport system%2C B chain gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0709 N840_0710 N840_0710 kdpA kdpA 726107 727780 - potassium translocating ATPase%2C subunit A ATPase of high-affinity potassium transport system%2C A chain gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0710 N840_0711 N840_0711 kdpF kdpF 727780 727869 - potassium ion accessory transporter subunit gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0711 N840_0712 N840_0712 ybfA ybfA 728182 728388 + ybfA gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0712 N840_0713 N840_0713 rhsC rhsC 728631 732824 + rhsC element core protein RshC gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0713 N840_0714 N840_0714 ybfB ybfB 732824 733150 + putative membrane protein gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0714 N840_0715 N840_0715 ybfO ybfO 733181 734701 + pseudogene%2C rhs-like%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0715 N840_0716 N840_0716 ybfC ybfC 734698 735267 + ybfC gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0716 N840_0717 N840_0717 ybfQ ybfQ 735493 735732 + pseudogene%2C H repeat-associated protein%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0717 N840_0718 N840_0718 ybfL ybfL 735873 737009 + predicted transposase (pseudogene)%3Bputative factor%3B Not classified%3B putative receptor protein pseudogene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0718 N840_0719 N840_0719 ybfD ybfD 737140 737901 + ybfD putative DNA ligase gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0719 N840_0720 N840_0720 ybgA ybgA 738049 738558 + conserved protein%2C DUF1722 family gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0720 N840_0721 N840_0721 phr phr 738555 739973 + deoxyribodipyrimidine photolyase%2C FAD-binding protein deoxyribodipyrimidine photolyase (photoreactivation) gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0721 N840_0722 N840_0722 dtpD dtpD 740123 741604 - dipeptide and tripeptide permease D putative transport protein gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0722 N840_0723 N840_0723 ybgI ybgI 741875 742618 + conserved metal-binding protein%2C NIF3 family gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0723 N840_0724 N840_0724 ybgJ ybgJ 742641 743297 + putative allophanate hydrolase%2C subunit 1 putative carboxylase gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0724 N840_0725 N840_0725 ybgK ybgK 743291 744223 + putative allophanate hydrolase%2C subunit 2 putative carboxylase gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0725 N840_0726 N840_0726 ybgL ybgL 744213 744947 + conserved protein%2C UPF0271 family putative lactam utilization protein gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0726 N840_0727 N840_0727 nei nei 744983 745774 + endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase endonuclease VIII and DNA N-glycosylase with an AP lyase activity gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0727 N840_0728 N840_0728 abrB abrB 745771 746817 - regulator of aidB expression%3B inner membrane protein putative transport protein gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0728 N840_0729 N840_0729 ybgO ybgO 746969 748030 - putative fimbrial-like adhesin protein gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0729 N840_0730 N840_0730 ybgP ybgP 748027 748755 - putative periplasmic pilus chaperone putative chaperone gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0730 N840_0731 N840_0731 ybgQ ybgQ 748770 751217 - putative outer membrane protein gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0731 N840_0732 N840_0732 ybgD ybgD 751277 751843 - putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0732 N840_0733 N840_0733 gltA gltA 752233 753516 - citrate synthase gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0733 N840_0734 N840_0734 sdhC sdhC 754225 754614 + succinate dehydrogenase%2C membrane subunit%2C binds cytochrome b556 succinate dehydrogenase%2C cytochrome b556 gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0734 N840_0735 N840_0735 sdhD sdhD 754608 754955 + succinate dehydrogenase%2C membrane subunit%2C binds cytochrome b556 succinate dehydrogenase%2C hydrophobic subunit gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0735 N840_0736 N840_0736 sdhA sdhA 754955 756721 + succinate dehydrogenase%2C flavoprotein subunit gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0736 N840_0737 N840_0737 sdhB sdhB 756737 757453 + succinate dehydrogenase%2C FeS subunit succinate dehydrogenase%2C iron sulfur protein gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0737 N840_0738 N840_0738 sucA sucA 757754 760555 + 2-oxoglutarate decarboxylase%2C thiamin-requiring 2-oxoglutarate dehydrogenase (decarboxylase component) gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0738 N840_0739 N840_0739 sucB sucB 760570 761787 + dihydrolipoyltranssuccinase 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0739 N840_0740 N840_0740 sucC sucC 762062 763228 + succinyl-CoA synthetase%2C beta subunit gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0740 N840_0741 N840_0741 sucD sucD 763228 764097 + succinyl-CoA synthetase%2C NAD(P)-binding%2C alpha subunit succinyl-CoA synthetase%2C alpha subunit gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0741 N840_0742 N840_0742 mngR mngR 764201 764923 - DNA-binding transcriptional dual regulator%2C fatty-acyl-binding protein transcriptional regulator of succinylCoA synthetase operon gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0742 N840_0743 N840_0743 mngA mngA 765032 767008 + fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component protein modification enzyme%2C induction of ompC gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0743 N840_0744 N840_0744 mngB mngB 767026 769659 + alpha-mannosidase putative sugar hydrolase gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0744 N840_0745 N840_0745 cydA cydA 770506 772074 + cytochrome d terminal oxidase%2C subunit I cytochrome d terminal oxidase%2C polypeptide subunit I gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0745 N840_0746 N840_0746 cydB cydB 772090 773229 + cytochrome d terminal oxidase%2C subunit II cytochrome d terminal oxidase polypeptide subunit II gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0746 N840_0747 N840_0747 ybgT ybgT 773244 773357 + ybgT gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0747 N840_0748 N840_0748 ybgE ybgE 773357 773650 + ybgE gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0748 N840_0749 N840_0749 ybgC ybgC 773800 774204 + acyl-CoA thioesterase%2C involved in phospholipid metabolism gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0749 N840_0750 N840_0750 tolQ tolQ 774201 774893 + membrane spanning protein in TolA-TolQ-TolR complex inner membrane protein%2C membrane-spanning%2C maintains integrity of cell envelope%3B tolerance to group A colicins gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0750 N840_0751 N840_0751 tolR tolR 774897 775325 + membrane spanning protein in TolA-TolQ-TolR complex putative inner membrane protein%2C involved in the tonB-independent uptake of group A colicins gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0751 N840_0752 N840_0752 tolA tolA 775390 776655 + membrane anchored protein in TolA-TolQ-TolR complex membrane spanning protein%2C required for outer membrane integrity gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0752 N840_0753 N840_0753 tolB tolB 776788 778080 + periplasmic protein periplasmic protein involved in the tonb-independent uptake of group A colicins gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0753 N840_0754 N840_0754 pal pal 778115 778636 + peptidoglycan-associated outer membrane lipoprotein peptidoglycan-associated lipoprotein gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0754 N840_0755 N840_0755 ybgF ybgF 778646 779437 + periplasmic TolA-binding protein gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0755 N840_0756 N840_0756 lysT lysT 779602 779677 + tRNA-Lys anticodon: UUU tRNA gene756 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0756 N840_0757 N840_0757 valT valT 779813 779888 + tRNA-Val anticodon: UAC tRNA gene757 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0757 N840_0758 N840_0758 lysW lysW 779891 779966 + tRNA-Lys anticodon: UUU tRNA gene758 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0758 N840_0759 N840_0759 valZ valZ 780116 780191 + tRNA-Val anticodon: UAC tRNA gene759 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0759 N840_0760 N840_0760 lysY lysY 780195 780270 + tRNA-Lys anticodon: UUU tRNA gene760 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0760 N840_0761 N840_0761 lysZ lysZ 780417 780492 + tRNA-Lys anticodon: UUU tRNA gene761 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0761 N840_0762 N840_0762 lysQ lysQ 780625 780700 + tRNA-Lys anticodon: UUU tRNA gene762 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0762 N840_0763 N840_0763 nadA nadA 781133 782176 + quinolinate synthase%2C subunit A quinolinate synthetase%2C A protein gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0763 N840_0764 N840_0764 pnuC pnuC 782214 782933 + nicotinamide riboside transporter required for NMN transport gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0764 N840_0765 N840_0765 zitB zitB 782930 783871 - zinc efflux system putative transport system permease protein gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0765 N840_0766 N840_0766 ybgS ybgS 783985 784365 - ybgS putative homeobox protein gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0766 N840_0767 N840_0767 aroG aroG 784681 785733 + 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase%2C phenylalanine repressible 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase%2C phenylalanine repressible) gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0767 N840_0768 N840_0768 gpmA gpmA 785891 786643 - phosphoglyceromutase 1 gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0768 N840_0769 N840_0769 galT galT 787882 788928 - galactose-1-phosphate uridylyltransferase gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0769 N840_0770 N840_0770 galE galE 788938 789954 - UDP-galactose-4-epimerase gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0770 N840_0771 N840_0771 modF modF 790215 791687 - fused molybdate transporter subunits of ABC superfamily: ATP-binding components ATP-binding component of molybdate transport system gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0771 N840_0772 N840_0772 modE modE 791755 792543 - DNA-binding transcriptional repressor for the molybdenum transport operon modABC molybdate uptake regulatory protein gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0772 N840_0773 N840_0773 acrZ acrZ 792672 792821 + AcrAB-TolC efflux pump accessory protein%2C membrane-associated gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0773 N840_0774 N840_0774 modA modA 792988 793761 + molybdate transporter subunit molybdate-binding periplasmic protein%3B permease%3B periplasmic-binding component of ABC superfamily gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0774 N840_0775 N840_0775 modB modB 793761 794450 + molybdate transporter subunit molybdate transport permease protein%3B membrane component of ABC superfamily gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0775 N840_0776 N840_0776 modC modC 794453 795511 + molybdate transporter subunit ATP-binding component of molybdate transport gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0776 N840_0777 N840_0777 ybhA ybhA 795512 796330 - pyridoxal phosphate (PLP) phosphatase putative phosphatase gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0777 N840_0778 N840_0778 pgl pgl 796485 797480 + 6-phosphogluconolactonase putative isomerase gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0778 N840_0779 N840_0779 ybhD ybhD 797521 798474 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0779 N840_0780 N840_0780 ybhH ybhH 798658 799710 + ybhH gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0780 N840_0781 N840_0781 ybhI ybhI 799786 801219 + putative transporter putative membrane pump protein gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0781 N840_0782 N840_0782 ybhJ ybhJ 801402 803663 + putative hydratase putative enzyme gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0782 N840_0783 N840_0783 ybhC ybhC 803897 805180 - acyl-CoA thioesterase%2C lipoprotein putative pectinesterase gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0783 N840_0784 N840_0784 bioF bioF 817487 818641 + 8-amino-7-oxononanoate synthase gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0784 N840_0785 N840_0785 bioC bioC 818628 819383 + malonyl-CoA methyltransferase%2C SAM-dependent biotin biosynthesis%3B reaction prior to pimeloyl CoA gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0785 N840_0786 N840_0786 bioD bioD 819376 820053 + dethiobiotin synthetase gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0786 N840_0787 N840_0787 uvrB uvrB 820632 822653 + excinulease of nucleotide excision repair%2C DNA damage recognition component DNA repair%3B excision nuclease subunit B gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0787 N840_0788 N840_0788 ybhK ybhK 822845 823753 - putative transferase with NAD(P)-binding Rossmann-fold domain putative structural protein gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0788 N840_0789 N840_0789 moaA moaA 824150 825139 + molybdopterin biosynthesis protein A molybdopterin biosynthesis%2C protein A gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0789 N840_0790 N840_0790 moaB moaB 825161 825673 + molybdopterin biosynthesis protein B molybdopterin biosynthesis%2C protein B gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0790 N840_0791 N840_0791 moaC moaC 825676 826161 + molybdopterin biosynthesis%2C protein C gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0791 N840_0792 N840_0792 moaD moaD 826154 826399 + molybdopterin synthase%2C small subunit molybdopterin biosynthesis gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0792 N840_0793 N840_0793 moaE moaE 826401 826853 + molybdopterin synthase%2C large subunit molybdopterin converting factor%2C subunit 2 gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0793 N840_0794 N840_0794 ybhL ybhL 826990 827694 + inner membrane protein%2C UPF0005 family gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0794 N840_0795 N840_0795 ybhM ybhM 827899 828612 + inner membrane protein%2C UPF0005 family gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0795 N840_0796 N840_0796 ybhN ybhN 828648 829604 - conserved inner membrane protein gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0796 N840_0797 N840_0797 clsB clsB 829604 830845 - cardiolipin synthase 2 cardiolipin synthase activity gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0797 N840_0798 N840_0798 ybhP ybhP 830842 831603 - conserved protein%2C endo/exonuclease/phosphatase family PFAM PF03372 gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0798 N840_0799 N840_0799 ybhQ ybhQ 831736 832146 + inner membrane protein gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0799 N840_0800 N840_0800 ybhR ybhR 832108 833214 - putative transporter subunit: membrane component of ABC superfamily gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0800 N840_0801 N840_0801 ybhS ybhS 833225 834358 - putative transporter subunit: membrane component of ABC superfamily gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0801 N840_0802 N840_0802 ybhF ybhF 834351 836087 - fused predicted transporter subunits of ABC superfamily: ATP-binding components putative ATP-binding component of a transport system gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0802 N840_0803 N840_0803 ybhG ybhG 836080 837078 - putative membrane fusion protein (MFP) component of efflux pump%2C membrane anchor putative membrane protein gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0803 N840_0804 N840_0804 ybiH ybiH 837078 837749 - putative DNA-binding transcriptional regulator putative transcriptional regulator gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0804 N840_0805 N840_0805 rhlE rhlE 837978 839342 + ATP-dependent RNA helicase putative ATP-dependent RNA helicase gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0805 N840_0806 N840_0806 ybiA ybiA 839574 840056 - conserved protein%2C DUF1768 family gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0806 N840_0807 N840_0807 dinG dinG 840176 842326 + ATP-dependent DNA helicase probably ATP-dependent helicase gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0807 N840_0808 N840_0808 ybiB ybiB 842354 843316 + putative family 3 glycosyltransferase putative enzyme gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0808 N840_0809 N840_0809 ybiC ybiC 843457 844542 + putative dehydrogenase gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0809 N840_0810 N840_0810 ybiJ ybiJ 844771 845031 - ybiJ gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0810 N840_0811 N840_0811 ybiI ybiI 845296 845562 - DksA-type zinc finger protein gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0811 N840_0812 N840_0812 ybiX ybiX 845636 846313 - conserved protein%2C Fe(II)-dependent oxygenase superfamily putative enzyme gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0812 N840_0813 N840_0813 fiu fiu 846355 848637 - catecholate siderophore receptor Fiu ferric iron outer membrane transporter%2C TonB-dependent%3B siderophore receptor for ferri-dihydroxybenzoylserine%2C ferri-dihydroxybenzoate and other catecholate siderophores%3B surface receptor for colicins G%2C H%2C and E492 gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0813 N840_0814 N840_0814 mcbA mcbA 848902 849162 - colanic acid mucoidy stimulation protein gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0814 N840_0815 N840_0815 rlmF rlmF 849438 850364 + 23S rRNA m(6)A1618 methyltransferase%2C SAM-dependent gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0815 N840_0816 N840_0816 ybiO ybiO 850361 852586 - mechanosensitive channel protein%2C intermediate conductance putative transport protein gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0816 N840_0817 N840_0817 glnQ glnQ 852847 853569 - glutamine transporter subunit ATP-binding component of glutamine high-affinity transport system gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0817 N840_0818 N840_0818 glnP glnP 853566 854225 - glutamine transporter subunit glutamine high-affinity transport system%3B membrane component gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0818 N840_0819 N840_0819 glnH glnH 854364 855110 - glutamine transporter subunit periplasmic glutamine-binding protein%3B permease gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0819 N840_0820 N840_0820 dps dps 855514 856017 - Fe-binding and storage protein%3B stress-inducible DNA-binding protetin global regulator%2C starvation conditions gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0820 N840_0821 N840_0821 rhtA rhtA 856316 857203 - threonine and homoserine efflux system putative transmembrane subunit gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0821 N840_0822 N840_0822 ompX ompX 857556 858071 + outer membrane protein X gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0822 N840_0823 N840_0823 ybiP ybiP 858120 859703 - putative hydrolase%2C inner membrane putative enzyme gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0823 N840_0824 N840_0824 mntS mntS 859975 860103 - Mn(2)-response protein%2C MntR-repressed gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0824 N840_0825 N840_0825 mntR mntR 860289 860756 + DNA-binding transcriptional regulator of mntH gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0825 N840_0826 N840_0826 ybiR ybiR 860753 861871 + putative transporter gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0826 N840_0827 N840_0827 ybiS ybiS 861930 862850 - L%2CD-transpeptidase linking Lpp to murein gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0827 N840_0828 N840_0828 ybiT ybiT 863069 864661 + fused predicted transporter subunits of ABC superfamily: ATP-binding components putative ATP-binding component of a transport system gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0828 N840_0829 N840_0829 ybiU ybiU 864902 866167 - ybiU gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0829 N840_0830 N840_0830 ybiV ybiV 866319 867134 - sugar phosphatase%3B preference for fructose-1-P%2C ribose-5-P and glucose-6-P gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0830 N840_0831 N840_0831 ybiW ybiW 867280 869712 - putative pyruvate formate lyase gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0831 N840_0832 N840_0832 ybiY ybiY 869718 870617 - putative pyruvate formate lyase activating enzyme gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0832 N840_0833 N840_0833 fsaA fsaA 870748 871410 + fructose-6-phosphate aldolase 1 fructose-6-phosphate aldolase gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0833 N840_0834 N840_0834 moeB moeB 871486 872235 - molybdopterin synthase sulfurylase molybdopterin biosynthesis gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0834 N840_0835 N840_0835 moeA moeA 872235 873470 - molybdopterin molybdenumtransferase%3B molybdopterin biosynthesis protein molybdopterin biosynthesis gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0835 N840_0836 N840_0836 iaaA iaaA 873674 874639 + Isoaspartyl peptidase putative asparaginase gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0836 N840_0837 N840_0837 gsiA gsiA 874626 876497 + glutathione transporter ATP-binding protein%2C ABC superfamily putative ATP-binding component of a transport system gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0837 N840_0838 N840_0838 gsiB gsiB 876517 878055 + glutathione periplasmic binding protein%2C ABC superfamily transporter putative transport protein gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0838 N840_0839 N840_0839 gsiC gsiC 878073 878993 + glutathione transporter%2C permease component%2C ABC superfamily putative transport system permease protein gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0839 N840_0840 N840_0840 gsiD gsiD 878996 879907 + glutathione transporter%2C permease component%2C ABC superfamily putative transport system permease protein gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0840 N840_0841 N840_0841 yliE yliE 880085 882433 + putative membrane-anchored cyclic-di-GMP phosphodiesterase gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0841 N840_0842 N840_0842 yliF yliF 882441 883769 + putative membrane-anchored diguanylate cyclase gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0842 N840_0843 N840_0843 rimO rimO 883816 885141 - ribosomal protein S12 methylthiotransferase%3B radical SAM superfamily gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0843 N840_0844 N840_0844 bssR bssR 885354 885737 + repressor of biofilm formation by indole transport regulation putative receptor gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0844 N840_0845 N840_0845 yliI yliI 885848 886963 + soluble aldose sugar dehydrogenase putative dehydrogenase gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0845 N840_0846 N840_0846 gstB gstB 886960 887586 - glutathione S-transferase putative transferase gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0846 N840_0847 N840_0847 dacC dacC 887833 889035 + D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) D-alanyl-D-alanine carboxypeptidase%3B penicillin-binding protein 6 gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0847 N840_0848 N840_0848 deoR deoR 889082 889840 - DNA-binding transcriptional repressor transcriptional repressor for deo operon%2C tsx%2C nupG gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0848 N840_0849 N840_0849 ybjG ybjG 889898 890494 - undecaprenyl pyrophosphate phosphatase gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0849 N840_0850 N840_0850 mdfA mdfA 890779 892011 + multidrug efflux system protein proton motive force efflux pump gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0850 N840_0851 N840_0851 ybjH ybjH 892052 892336 - ybjH gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0851 N840_0852 N840_0852 ybjI ybjI 892422 893237 - FMN and erythrose-4-P phosphatase gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0852 N840_0853 N840_0853 ybjJ ybjJ 893237 894445 - putative transporter putative DEOR-type transcriptional regulator gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0853 N840_0854 N840_0854 ybjK ybjK 894529 895065 + putative DNA-binding transcriptional regulator putative DEOR-type transcriptional regulator gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0854 N840_0855 N840_0855 rybB rybB 895082 895160 - sRNA antisense regulator of ompC and ompW mRNA instability%2C Hfq-dependent identified in a large scale screen gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0855 N840_0856 N840_0856 ybjL ybjL 895240 896925 - putative transporter putative transport protein gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0856 N840_0857 N840_0857 ybjM ybjM 897195 897572 + inner membrane protein gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0857 N840_0858 N840_0858 grxA grxA 897602 897859 - glutaredoxin 1%2C redox coenzyme for ribonucleotide reductase (RNR1a) glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0858 N840_0859 N840_0859 ybjC ybjC 898019 898306 + conserved protein%2C DUF1418 family gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0859 N840_0860 N840_0860 nfsA nfsA 898290 899012 + nitroreductase A%2C NADPH-dependent%2C FMN-dependent gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0860 N840_0861 N840_0861 rimK rimK 899073 899975 + ribosomal protein S6 modification protein gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0861 N840_0862 N840_0862 ybjN ybjN 900063 900539 + negative regulator of motility%3B multicopy suppressor of coaA(Ts) putative sensory transduction regulator gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0862 N840_0863 N840_0863 potF potF 900890 902002 + putrescine transporter subunit: periplasmic-binding component of ABC superfamily periplasmic putrescine-binding protein%3B permease protein gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0863 N840_0864 N840_0864 potG potG 902097 903230 + putrescine transporter subunit: ATP-binding component of ABC superfamily ATP-binding component of putrescine transport system gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0864 N840_0865 N840_0865 potH potH 903240 904193 + putrescine transporter subunit: membrane component of ABC superfamily putrescine transport protein%3B permease gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0865 N840_0866 N840_0866 potI potI 904190 905035 + putrescine transporter subunit: membrane component of ABC superfamily putrescine transport protein%3B permease gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0866 N840_0867 N840_0867 ybjO ybjO 905095 905583 + inner membrane protein%2C DUF2593 family gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0867 N840_0868 N840_0868 rlmC rlmC 905624 906751 + 23S rRNA m(5)U747 methyltransferase%2C SAM-dependent putative enzyme gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0868 N840_0869 N840_0869 artJ artJ 906950 907681 - arginine binding protein%2C periplasmic arginine 3rd transport system periplasmic binding protein gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0869 N840_0870 N840_0870 artM artM 907972 908640 - arginine transporter subunit arginine 3rd transport system permease protein%3B membrane component of ABC superfamily gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0870 N840_0871 N840_0871 artQ artQ 908640 909356 - arginine transporter subunit arginine 3rd transport system permease protein%3B membrane component of ABC superfamily gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0871 N840_0872 N840_0872 artI artI 909363 910094 - arginine transporter subunit arginine 3rd transport system periplasmic binding protein gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0872 N840_0873 N840_0873 artP artP 910112 910840 - arginine transporter subunit ATP-binding component of 3rd arginine transport system gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0873 N840_0874 N840_0874 ybjP ybjP 911058 911573 - lipoprotein putative lipoprotein gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0874 N840_0875 N840_0875 ybjQ ybjQ 911699 912022 + conserved protein%2C UPF0145 family gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0875 N840_0876 N840_0876 amiD amiD 912019 912849 + 1%2C6-anhydro-N-acetylmuramyl-L-alanine amidase%2C Zn-dependent%3B OM lipoprotein gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0876 N840_0877 N840_0877 ybjS ybjS 912846 913859 - putative NAD(P)H-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0877 N840_0878 N840_0878 ybjT ybjT 913958 915388 - conserved protein with NAD(P)-binding Rossmann-fold domain gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0878 N840_0879 N840_0879 ltaE ltaE 915399 916400 - L-allo-threonine aldolase%2C PLP-dependent gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0879 N840_0880 N840_0880 poxB poxB 916437 918155 - pyruvate dehydrogenase (pyruvate oxidase)%2C thiamin-dependent%2C FAD-binding protein pyruvate oxidase gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0880 N840_0881 N840_0881 hcr hcr 918288 919256 - HCP oxidoreductase%2C NADH-dependent gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0881 N840_0882 N840_0882 hcp hcp 919268 920920 - hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0882 N840_0883 N840_0883 ybjE ybjE 921064 921963 - putative transporter putative surface protein gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0883 N840_0884 N840_0884 aqpZ aqpZ 922458 923153 - aquaporin Z transmembrane water channel%3B aquaporin Z gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0884 N840_0885 N840_0885 ybjD ybjD 923579 925237 + conserved protein with nucleoside triphosphate hydrolase domain gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0885 N840_0886 N840_0886 ybjX ybjX 925234 926226 - ybjX putative enzyme gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0886 N840_0887 N840_0887 macA macA 926341 927456 + macrolide transporter subunit%2C membrane fusion protein (MFP) component gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0887 N840_0888 N840_0888 macB macB 927453 929399 + fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0888 N840_0889 N840_0889 cspD cspD 929472 929696 - inhibitor of DNA replication%2C cold shock protein-like protein stress induced DNA replication inhibitor. gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0889 N840_0890 N840_0890 clpS clpS 930019 930339 + regulatory protein for ClpA substrate specificity gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0890 N840_0891 N840_0891 clpA clpA 930370 932646 + ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease%2C chaperone activity ATP-binding component of serine protease gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0891 N840_0892 N840_0892 serW serW 932990 933077 - tRNA-Ser anticodon: GGA tRNA gene912 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0892 N840_0893 N840_0893 infA infA 933331 933549 - translation initiation factor IF-1 protein chain initiation factor IF-1 gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0893 N840_0894 N840_0894 aat aat 933834 934538 - leucyl/phenylalanyl-tRNA-protein transferase leucyl%2C phenylalanyl-tRNA-protein transferase gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0894 N840_0895 N840_0895 cydC cydC 934580 936301 - fused glutathione%2C cysteine exporter subunits of ABC superfamily: membrane component/ATP-binding component ATP-binding component of cytochrome-related transport gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0895 N840_0896 N840_0896 cydD cydD 936302 938068 - fused glutathione%2C cysteine exporter subunits of ABC superfamily: membrane component/ATP-binding component ATP-binding component of cytochrome-related transport%2C Zn sensitive gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0896 N840_0897 N840_0897 trxB trxB 938191 939156 - thioredoxin reductase%2C FAD/NAD(P)-binding protein thioredoxin reductase gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0897 N840_0898 N840_0898 lrp lrp 939700 940194 + DNA-binding transcriptional dual regulator%2C leucine-binding protein regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0898 N840_0899 N840_0899 ftsK ftsK 940329 944318 + DNA translocase at septal ring sorting daughter chromsomes cell division protein gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0899 N840_0900 N840_0900 lolA lolA 944477 945088 + lipoprotein chaperone periplasmic protein effects translocation of lipoproteins from inner membrane to outer gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0900 N840_0901 N840_0901 rarA rarA 945099 946442 + DNA-dependent ATPase involved in processing recombination intermediates at replication forks putative polynucleotide enzyme gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0901 N840_0902 N840_0902 serS serS 946533 947825 + seryl-tRNA synthetase%2C also charges selenocysteinyl-tRNA with serine serine tRNA synthetase%3B also charges selenocystein tRNA with serine gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0902 N840_0903 N840_0903 dmsA dmsA 948064 950508 + dimethyl sulfoxide reductase%2C anaerobic%2C subunit A anaerobic dimethyl sulfoxide reductase subunit A gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0903 N840_0904 N840_0904 dmsB dmsB 950519 951136 + dimethyl sulfoxide reductase%2C anaerobic%2C subunit B anaerobic dimethyl sulfoxide reductase subunit B gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0904 N840_0905 N840_0905 dmsC dmsC 951138 952001 + dimethyl sulfoxide reductase%2C anaerobic%2C subunit C anaerobic dimethyl sulfoxide reductase subunit C gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0905 N840_0906 N840_0906 ycaC ycaC 952036 952662 - putative hydrolase%2C isochorismatase family gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0906 N840_0907 N840_0907 ycaD ycaD 952976 954124 + putative MFS-type transporter gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0907 N840_0908 N840_0908 ycaM ycaM 954334 955764 + putative transporter gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0908 N840_0909 N840_0909 ycaN ycaN 955765 956673 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0909 N840_0910 N840_0910 ycaK ycaK 956773 957363 + ycaK gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0910 N840_0911 N840_0911 pflA pflA 957445 958185 - pyruvate formate lyase activating enzyme 1 gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0911 N840_0912 N840_0912 pflB pflB 958377 960659 - pyruvate formate lyase I formate acetyltransferase 1 gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0912 N840_0913 N840_0913 focA focA 960714 961571 - formate channel probable formate transporter (formate channel 1) gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0913 N840_0914 N840_0914 ycaO ycaO 961977 963737 - ribosomal protein S12 methylthiotransferase accessory factor gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0914 N840_0915 N840_0915 ycaP ycaP 963867 964559 + putative inner membrane protein%2C UPF0702 family gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0915 N840_0916 N840_0916 serC serC 964758 965846 + 3-phosphoserine/phosphohydroxythreonine aminotransferase 3-phosphoserine aminotransferase gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0916 N840_0917 N840_0917 aroA aroA 965917 967200 + 5-enolpyruvylshikimate-3-phosphate synthetase gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0917 N840_0918 N840_0918 ycaL ycaL 967369 968133 + putative peptidase with chaperone function putative heat shock protein gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0918 N840_0919 N840_0919 cmk cmk 968306 968989 + cytidylate kinase gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0919 N840_0920 N840_0920 rpsA rpsA 969100 970773 + 30S ribosomal subunit protein S1 gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0920 N840_0921 N840_0921 ihfB ihfB 970933 971217 + integration host factor (IHF)%2C DNA-binding protein%2C beta subunit integration host factor (IHF)%2C beta subunit%3B site-specific recombination gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0921 N840_0922 N840_0922 ycaI ycaI 971425 973689 + inner membrane protein%2C ComEC family of competence proteins gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0922 N840_0923 N840_0923 msbA msbA 973726 975474 + fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component ATP-binding transport protein%3B multicopy suppressor of htrB gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0923 N840_0924 N840_0924 lpxK lpxK 975471 976457 + lipid A 4'kinase gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0924 N840_0925 N840_0925 ycaQ ycaQ 976494 977726 + ycaQ gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0925 N840_0926 N840_0926 ycaR ycaR 977778 977960 + peroxide and acid resistance protein%2C UPF0434 family gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0926 N840_0927 N840_0927 kdsB kdsB 977957 978703 + 3-deoxy-manno-octulosonate cytidylyltransferase CTP:CMP-3-deoxy-D-manno-octulosonate transferase gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0927 N840_0928 N840_0928 ycbJ ycbJ 978857 979750 + ycbJ gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0928 N840_0929 N840_0929 ycbC ycbC 979727 980506 - conserved protein%2C DUF218 superfamily gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0929 N840_0930 N840_0930 smtA smtA 980642 981427 + putative S-adenosyl-L-methionine-dependent methyltransferase S-adenosylmethionine-dependent methyltransferase gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0930 N840_0931 N840_0931 mukF mukF 981424 982746 + chromosome condensin MukBEF%2C kleisin-like subunit%2C binds calcium mukF protein (killing factor KICB) gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0931 N840_0932 N840_0932 mukE mukE 982727 983431 + Chromosome condensin MukBEF%2C MukE localization factor gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0932 N840_0933 N840_0933 mukB mukB 983431 987891 + chromosome condensin MukBEF%2C ATPase and DNA-binding subunit kinesin-like cell division protein involved in chromosome partitioning gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0933 N840_0934 N840_0934 ycbB ycbB 988152 989999 + murein L%2CD-transpeptidase putative amidase gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0934 N840_0935 N840_0935 ycbK ycbK 990180 990728 + ycbK gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0935 N840_0936 N840_0936 ycbL ycbL 990755 991402 + putative metal-binding enzyme gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0936 N840_0937 N840_0937 aspC aspC 991624 992814 - aspartate aminotransferase%2C PLP-dependent aspartate aminotransferase gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0937 N840_0938 N840_0938 ompF ompF 992999 994087 - outer membrane porin 1a (Ia%3Bb%3BF) outer membrane protein 1a (Ia%3Bb%3BF) gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0938 N840_0939 N840_0939 asnS asnS 994690 996090 - asparaginyl tRNA synthetase asparagine tRNA synthetase gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0939 N840_0940 N840_0940 pncB pncB 996259 997461 - nicotinate phosphoribosyltransferase gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0940 N840_0941 N840_0941 pepN pepN 997727 1000339 + aminopeptidase N gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0941 N840_0942 N840_0942 ssuB ssuB 1000382 1001149 - alkanesulfonate transporter subunit ATP-binding component of ABC superfamily gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0942 N840_0943 N840_0943 ssuC ssuC 1001146 1001937 - putative alkanesulfonate transporter subunit membrane component of ABC superfamily gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0943 N840_0944 N840_0944 ssuD ssuD 1001948 1003093 - alkanesulfonate monooxygenase%2C FMNH(2)-dependent gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0944 N840_0945 N840_0945 ssuA ssuA 1003090 1004049 - aliphatic sulfonate binding protein%2C SsuABC ABC transporter periplasmic-binding component of ABC superfamily gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0945 N840_0946 N840_0946 ssuE ssuE 1004042 1004617 - NAD(P)H-dependent FMN reductase gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0946 N840_0947 N840_0947 elfA elfA 1004973 1005512 + putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0947 N840_0948 N840_0948 elfD elfD 1005595 1006296 + putative periplasmic pilin chaperone gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0948 N840_0949 N840_0949 elfC elfC 1006321 1008921 + putative outer membrane usher protein gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0949 N840_0950 N840_0950 elfG elfG 1008912 1009982 + putative fimbrial-like adhesin protein gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0950 N840_0951 N840_0951 ycbU ycbU 1009994 1010536 + putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0951 N840_0952 N840_0952 ycbV ycbV 1010544 1011059 + putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0952 N840_0953 N840_0953 ycbF ycbF 1011052 1011762 + putative periplasmic pilini chaperone gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0953 N840_0954 N840_0954 pyrD pyrD 1011873 1012883 + dihydro-orotate oxidase%2C FMN-linked dihydro-orotate dehydrogenase gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0954 N840_0955 N840_0955 zapC zapC 1013057 1013598 + Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0955 N840_0956 N840_0956 ycbX ycbX 1013595 1014704 - putative 2Fe-2S cluster-containing protein%3B 6-N-hydroxylaminopurine resistance protein gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0956 N840_0957 N840_0957 rlmL rlmL 1014948 1017056 + fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase%2C SAM-dependent putative oxidoreductase gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0957 N840_0958 N840_0958 uup uup 1017068 1018975 + fused predicted transporter subunits of ABC superfamily: ATP-binding components putative ATP-binding component of a transport system gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0958 N840_0959 N840_0959 pqiA pqiA 1019105 1020358 + paraquat-inducible membrane protein A paraquat-inducible protein A gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0959 N840_0960 N840_0960 pqiB pqiB 1020363 1022003 + paraquat-inducible protein B gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0960 N840_0961 N840_0961 ymbA ymbA 1022000 1022563 + ymbA gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0961 N840_0962 N840_0962 rmf rmf 1022819 1022986 + ribosome modulation factor gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0962 N840_0963 N840_0963 fabA fabA 1023056 1023574 - beta-hydroxydecanoyl thioester dehydrase beta-hydroxydecanoyl thioester dehydrase%2C trans-2-decenoyl-ACP isomerase gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0963 N840_0964 N840_0964 ycbZ ycbZ 1023643 1025403 - putative peptidase putative ATP-dependent protease gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0964 N840_0965 N840_0965 matP matP 1025589 1026041 + Ter macrodomain organizer matS-binding protein putative dehydrogenase gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0965 N840_0966 N840_0966 ompA ompA 1026117 1027157 - outer membrane protein A (3a%3BII*%3BG%3Bd) outer membrane protein 3a (II*%3BG%3Bd) gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0966 N840_0967 N840_0967 sulA sulA 1027514 1028023 - SOS cell division inhibitor suppressor of lon%3B inhibits cell division and ftsZ ring formation gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0967 N840_0968 N840_0968 sxy sxy 1028242 1028871 + required for expression of CRP-S-dependent promoters gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0968 N840_0969 N840_0969 yccS yccS 1028834 1030987 - inner membrane protein gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0969 N840_0970 N840_0970 yccF yccF 1031006 1031452 - inner membrane protein%2C DUF307 family gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0970 N840_0971 N840_0971 helD helD 1031575 1033629 + DNA helicase IV gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0971 N840_0972 N840_0972 mgsA mgsA 1033661 1034119 - methylglyoxal synthase gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0972 N840_0973 N840_0973 yccT yccT 1034215 1034877 - yccT gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0973 N840_0974 N840_0974 yccU yccU 1035050 1035463 + putative CoA-binding protein gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0974 N840_0975 N840_0975 hspQ hspQ 1035508 1035825 - heat shock protein involved in degradation of mutant DnaA%3B hemimethylated oriC DNA-binding protein gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0975 N840_0976 N840_0976 rlmI rlmI 1035883 1037073 - 23S rRNA m(5)C1962 methyltransferase%2C SAM-dependent putative oxidoreductase gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0976 N840_0977 N840_0977 yccX yccX 1037168 1037446 + weak acylphosphatase gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0977 N840_0978 N840_0978 tusE tusE 1037443 1037772 - sulfurtransferase required for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis putative sulfite reductase gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0978 N840_0979 N840_0979 yccA yccA 1037863 1038522 - HflBKC-binding inner membrane protein%2C UPF0005 family putative carrier/transport protein gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0979 N840_0980 N840_0980 serT serT 1038729 1038816 - tRNA-Ser anticodon: UGA tRNA gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0980 N840_0981 N840_0981 hyaA hyaA 1039243 1040361 + hydrogenase 1%2C small subunit hydrogenase-1 small subunit gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0981 N840_0982 N840_0982 hyaB hyaB 1040358 1042151 + hydrogenase 1%2C large subunit hydrogenase-1 large subunit gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0982 N840_0983 N840_0983 hyaC hyaC 1042170 1042877 + hydrogenase 1%2C b-type cytochrome subunit probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0983 N840_0984 N840_0984 hyaD hyaD 1042874 1043461 + hydrogenase 1 maturation protease processing of HyaA and HyaB proteins gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0984 N840_0985 N840_0985 hyaE hyaE 1043458 1043856 + putative HyaA chaperone processing of HyaA and HyaB proteins gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0985 N840_0986 N840_0986 hyaF hyaF 1043853 1044710 + protein involved in nickel incorporation into hydrogenase-1 proteins nickel incorporation into hydrogenase-1 proteins gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0986 N840_0987 N840_0987 appC appC 1044844 1046388 + cytochrome bd-II oxidase%2C subunit I gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0987 N840_0988 N840_0988 appB appB 1046400 1047536 + cytochrome bd-II oxidase%2C subunit II probable third cytochrome oxidase%2C subunit II gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0988 N840_0989 N840_0989 yccB yccB 1047549 1047641 + yccB gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0989 N840_0990 N840_0990 appA appA 1047721 1049019 + phosphoanhydride phosphorylase phosphoanhydride phosphorylase%3B pH 2.5 acid phosphatase%3B periplasmic gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0990 N840_0991 N840_0991 etk etk 1049134 1051314 - cryptic autophosphorylating protein tyrosine kinase Etk gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0991 N840_0992 N840_0992 etp etp 1051334 1051780 - phosphotyrosine-protein phosphatase putative phosphatase gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0992 N840_0993 N840_0993 gfcE gfcE 1051768 1052907 - lipoprotein required for formation of the O-antigen capsule%2C predicted exopolysaccharide export protein putative function in exopolysaccharide production gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0993 N840_0994 N840_0994 gfcD gfcD 1052953 1055049 - gfcD gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0994 N840_0995 N840_0995 gfcC gfcC 1055049 1055795 - gfcC gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0995 N840_0996 N840_0996 gfcB gfcB 1055792 1056436 - putative outer membrane lipoprotein putative regulator gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0996 N840_0997 N840_0997 gfcA gfcA 1056543 1056848 - gfcA gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0997 N840_0998 N840_0998 insA insA 1056937 1057212 + IS1 repressor TnpA insA4 gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0998 N840_0999 N840_0999 insB1 insB1 1057131 1057633 + Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=N840_0999 N840_1000 N840_1000 cspH cspH 1058066 1058278 - stress protein%2C member of the CspA-family cold shock-like protein gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1000 N840_1001 N840_1001 cspG cspG 1058564 1058776 + cold shock protein-like protein%2C cold-inducible homolog of Salmonella cold shock protein gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1001 N840_1002 N840_1002 ymcE ymcE 1058950 1059180 + cold shock gene suppresses fabA and ts growth mutation gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1002 N840_1003 N840_1003 gnsA gnsA 1059170 1059343 + multicopy suppressor of secG(Cs) and fabA6(Ts)%3B predicted regulator of phosphatidylethanolamine synthesis gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1003 N840_1004 N840_1004 yccM yccM 1059392 1060465 - putative 4Fe-4S membrane protein gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1004 N840_1005 N840_1005 torS torS 1060537 1063281 - hybrid sensory histidine kinase in two-component regulatory system with TorR gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1005 N840_1006 N840_1006 torT torT 1063364 1064392 + periplasmic sensory protein associated with the TorRS two-component regulatory system part of regulation of tor operon%2C periplasmic gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1006 N840_1007 N840_1007 torR torR 1064365 1065057 - DNA-binding response regulator in two-component regulatory system with TorS response transcriptional regulator for torA (sensor TorS) gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1007 N840_1008 N840_1008 torC torC 1065187 1066359 + trimethylamine N-oxide (TMAO) reductase I%2C cytochrome c-type subunit trimethylamine N-oxide reductase%2C cytochrome c-type subunit gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1008 N840_1009 N840_1009 torA torA 1066359 1068905 + trimethylamine N-oxide (TMAO) reductase I%2C catalytic subunit trimethylamine N-oxide reductase subunit gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1009 N840_1010 N840_1010 torD torD 1068902 1069501 + TorA-maturation chaperone part of trimethylamine-N-oxide oxidoreductase gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1010 N840_1011 N840_1011 cbpM cbpM 1069653 1069958 - modulator of CbpA co-chaperone gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1011 N840_1012 N840_1012 cbpA cbpA 1069958 1070878 - curved DNA-binding protein%2C DnaJ-like protein that functions as a co-chaperone of DnaK curved DNA-binding protein%3B functions closely related to DnaJ gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1012 N840_1013 N840_1013 yccE yccE 1071139 1072395 + yccE gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1013 N840_1014 N840_1014 agp agp 1072688 1073929 + glucose-1-phosphatase/inositol phosphatase periplasmic glucose-1-phosphatase gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1014 N840_1015 N840_1015 yccJ yccJ 1073967 1074194 - yccJ gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1015 N840_1016 N840_1016 wrbA wrbA 1074215 1074811 - NAD(P)H:quinone oxidoreductase flavoprotein WrbA (Trp repressor binding protein) gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1016 N840_1017 N840_1017 ymdF ymdF 1075184 1075357 + ymdF gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1017 N840_1018 N840_1018 rutG rutG 1075612 1076940 - pyrimidine permease putative transport protein gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1018 N840_1019 N840_1019 rutF rutF 1076961 1077455 - flavin:NADH reductase gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1019 N840_1020 N840_1020 rutE rutE 1077466 1078056 - malonic semialdehyde reductase gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1020 N840_1021 N840_1021 rutD rutD 1078066 1078866 - putative aminoacrylate hydrolase%2C reactive intermediate detoxification gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1021 N840_1022 N840_1022 rutC rutC 1078874 1079260 - putative aminoacrylate deaminase%2C reactive intermediate detoxification gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1022 N840_1023 N840_1023 rutB rutB 1079272 1079964 - ureidoacrylate amidohydrolase gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1023 N840_1024 N840_1024 rutA rutA 1079964 1081112 - pyrimidine oxygenase%2C FMN-dependent gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1024 N840_1025 N840_1025 rutR rutR 1081343 1081981 + DNA-binding transcriptional repressor for rut operon hypothetical transcriptional regulator gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1025 N840_1026 N840_1026 putA putA 1082021 1085983 - fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase proline dehydrogenase%2C P5C dehydrogenase gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1026 N840_1027 N840_1027 putP putP 1086406 1087914 + proline:sodium symporter major sodium/proline symporter gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1027 N840_1028 N840_1028 efeU efeU 1088457 1089286 + ferrous iron permease (pseudogene) pseudogene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1028 N840_1029 N840_1029 efeO efeO 1089344 1090471 + inactive ferrous ion transporter EfeUOB gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1029 N840_1030 N840_1030 efeB efeB 1090477 1091748 + deferrrochelatase%2C periplasmic gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1030 N840_1031 N840_1031 phoH phoH 1092093 1093157 + conserved protein with nucleoside triphosphate hydrolase domain PhoB-dependent%2C ATP-binding pho regulon component%3B may be helicase%3B induced by P starvation gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1031 N840_1032 N840_1032 pgaD pgaD 1093207 1093620 - biofilm PGA synthase PgaCD%2C regulatory subunit%3B c-di-GMP-stimulated activity and dimerization gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1032 N840_1033 N840_1033 pgaC pgaC 1093622 1094947 - biofilm PGA synthase PgaCD%2C catalytic subunit%3B poly-beta-1%2C6-N-acetyl-D-glucosamine synthase%3B c-di-GMP-stimulated activity and dimerization gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1033 N840_1034 N840_1034 pgaB pgaB 1094940 1096958 - poly-beta-1%2C6-N-acetyl-D-glucosamine (PGA) N-deacetylase%3B deacetylase required for biofilm adhesin polysaccharide PGA export%3B outer membrane lipoprotein gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1034 N840_1035 N840_1035 pgaA pgaA 1096967 1099390 - biofilm adhesin polysaccharide PGA secretin%3B OM porin%3B poly-beta-1%2C6-N-acetyl-D-glucosamine export protein putative outer membrane protein gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1035 N840_1036 N840_1036 ycdT ycdT 1099977 1101335 + diguanylate cyclase%2C membrane-anchored gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1036 N840_1037 N840_1037 insF1 insF1 1101376 1102242 - IS3 transposase B gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1037 N840_1038 N840_1038 insE1 insE1 1102239 1102538 - IS3 transposase A gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1038 N840_1039 N840_1039 ymdE ymdE 1102606 1102947 + pseudogene%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1039 N840_1040 N840_1040 ycdU ycdU 1102944 1103930 + putative inner membrane protein gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1040 N840_1041 N840_1041 serX serX 1104666 1104753 - tRNA-Ser anticodon: GGA tRNA gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1041 N840_1042 N840_1042 ghrA ghrA 1104987 1105925 + glyoxylate/hydroxypyruvate reductase A putative dehydrogenase gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1042 N840_1043 N840_1043 ycdX ycdX 1105980 1106717 + alkaline phosphatase required for swarming gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1043 N840_1044 N840_1044 ycdY ycdY 1106741 1107295 + YcdX chaperone%2C redox enzyme maturation protein (REMP) required for swarming putative oxidoreductase component gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1044 N840_1045 N840_1045 ycdZ ycdZ 1107397 1107888 + inner membrane protein%2C DUF1097 family gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1045 N840_1046 N840_1046 csgG csgG 1107952 1108785 - curli production assembly/transport outer membrane lipoprotein curli production assembly/transport component%2C 2nd curli operon gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1046 N840_1047 N840_1047 csgF csgF 1108812 1109228 - outer membrane protein required for curli nucleation by CsgB curli production assembly/transport component%2C 2nd curli operon gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1047 N840_1048 N840_1048 csgE csgE 1109253 1109642 - curlin secretion specificity factor curli production assembly/transport component%2C 2nd curli operon gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1048 N840_1049 N840_1049 csgD csgD 1109647 1110297 - DNA-binding transcriptional activator for csgBA putative 2-component transcriptional regulator for 2nd curli operon gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1049 N840_1050 N840_1050 csgB csgB 1111052 1111507 + curlin nucleator protein%2C minor subunit in curli complex minor curlin subunit precursor%2C similar ro CsgA gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1050 N840_1051 N840_1051 csgA csgA 1111548 1112003 + curlin subunit%2C amyloid curli fibers%2C cryptic curlin major subunit%2C coiled surface structures%3B cryptic gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1051 N840_1052 N840_1052 csgC csgC 1112062 1112394 + curli assembly protein putative curli production protein gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1052 N840_1053 N840_1053 ymdA ymdA 1112515 1112826 + ymdA gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1053 N840_1054 N840_1054 ymdB ymdB 1112921 1113454 + O-acetyl-ADP-ribose deacetylase%3B RNase III inhibitor during cold shock%3B putative cardiolipin synthase C regulatory subunit putative polyprotein gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1054 N840_1055 N840_1055 clsC clsC 1113456 1114877 + stationary phase cardiolipin synthase 3 putative synthase gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1055 N840_1056 N840_1056 opgC opgC 1114885 1116042 - membrane protein required for succinylation of osmoregulated periplasmic glucans (OPGs) gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1056 N840_1057 N840_1057 opgG opgG 1116436 1117971 + osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein periplasmic glucans biosynthesis protein gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1057 N840_1058 N840_1058 opgH opgH 1117964 1120507 + membrane glycosyltransferase membrane glycosyltransferase%3B synthesis of membrane-derived oligosaccharide (MDO) gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1058 N840_1059 N840_1059 yceK yceK 1120680 1120907 + outer membrane integrity lipoprotein gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1059 N840_1060 N840_1060 msyB msyB 1120908 1121282 - multicopy suppressor of secY and secA acidic protein suppresses mutants lacking function of protein export gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1060 N840_1061 N840_1061 mdtG mdtG 1121365 1122591 - putative drug efflux system putative transport protein gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1061 N840_1062 N840_1062 waaM waaM 1122763 1123683 - lauryl-acyl carrier protein (ACP)-dependent acyltransferase heat shock protein gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1062 N840_1063 N840_1063 yceA yceA 1123908 1124960 + putative rhodanese-related sulfurtransferase gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1063 N840_1064 N840_1064 yceI yceI 1125002 1125577 - secreted protein gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1064 N840_1065 N840_1065 yceJ yceJ 1125581 1126147 - putative cytochrome b561 gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1065 N840_1066 N840_1066 yceO yceO 1126408 1126548 - yceO gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1066 N840_1067 N840_1067 solA solA 1126569 1127687 - N-methyltryptophan oxidase%2C FAD-binding protein sarcosine oxidase-like protein gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1067 N840_1068 N840_1068 bssS bssS 1127802 1128056 - biofilm regulator gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1068 N840_1069 N840_1069 dinI dinI 1128343 1128588 - DNA damage-inducible protein I damage-inducible protein I gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1069 N840_1070 N840_1070 pyrC pyrC 1128662 1129708 - dihydro-orotase gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1070 N840_1071 N840_1071 yceB yceB 1129814 1130374 - lipoprotein%2C DUF1439 family gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1071 N840_1072 N840_1072 grxB grxB 1130508 1131155 - glutaredoxin 2 (Grx2) glutaredoxin 2 gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1072 N840_1073 N840_1073 mdtH mdtH 1131219 1132427 - multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1073 N840_1074 N840_1074 rimJ rimJ 1132663 1133247 + ribosomal-protein-S5-alanine N-acetyltransferase acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1074 N840_1075 N840_1075 yceH yceH 1133258 1133905 + conserved protein%2C UPF0502 family gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1075 N840_1076 N840_1076 yceM yceM 1133907 1134830 + putative oxidoreductase with NAD(P)-binding Rossmann-fold domain putative virulence factor gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1076 N840_1077 N840_1077 murJ murJ 1134940 1136475 + putative peptidoglycan lipid II flippase required for murein synthesis putative virulence factor gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1077 N840_1078 N840_1078 flgN flgN 1136515 1136931 - export chaperone for FlgK and FlgL protein of flagellar biosynthesis gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1078 N840_1079 N840_1079 flgM flgM 1136936 1137229 - anti-sigma factor for FliA (sigma 28) anti-FliA (anti-sigma) factor%3B also known as RflB protein gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1079 N840_1080 N840_1080 flgA flgA 1137305 1137964 - assembly protein for flagellar basal-body periplasmic P ring flagellar biosynthesis%3B assembly of basal-body periplasmic P ring gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1080 N840_1081 N840_1081 flgB flgB 1138119 1138535 + flagellar component of cell-proximal portion of basal-body rod flagellar biosynthesis%2C cell-proximal portion of basal-body rod gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1081 N840_1082 N840_1082 flgC flgC 1138539 1138943 + flagellar component of cell-proximal portion of basal-body rod flagellar biosynthesis%2C cell-proximal portion of basal-body rod gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1082 N840_1083 N840_1083 flgD flgD 1138955 1139650 + flagellar hook assembly protein flagellar biosynthesis%2C initiation of hook assembly gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1083 N840_1084 N840_1084 flgE flgE 1139675 1140883 + flagellar hook protein flagellar biosynthesis%2C hook protein gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1084 N840_1085 N840_1085 flgF flgF 1140903 1141658 + flagellar component of cell-proximal portion of basal-body rod flagellar biosynthesis%2C cell-proximal portion of basal-body rod gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1085 N840_1086 N840_1086 flgG flgG 1141830 1142612 + flagellar component of cell-distal portion of basal-body rod flagellar biosynthesis%2C cell-distal portion of basal-body rod gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1086 N840_1087 N840_1087 flgH flgH 1142665 1143363 + flagellar protein of basal-body outer-membrane L ring flagellar biosynthesis%2C basal-body outer-membrane L (lipopolysaccharide layer) ring protein gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1087 N840_1088 N840_1088 flgI flgI 1143375 1144472 + putative flagellar basal body protein homolog of Salmonella P-ring of flagella basal body gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1088 N840_1089 N840_1089 flgJ flgJ 1144472 1145413 + muramidase flagellar biosynthesis gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1089 N840_1090 N840_1090 flgK flgK 1145479 1147122 + flagellar hook-filament junction protein 1 flagellar biosynthesis%2C hook-filament junction protein 1 gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1090 N840_1091 N840_1091 flgL flgL 1147134 1148087 + flagellar hook-filament junction protein flagellar biosynthesis%3B hook-filament junction protein gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1091 N840_1092 N840_1092 rne rne 1148283 1151468 - fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein RNase E%2C membrane attachment%2C mRNA turnover%2C maturation 5S RNA gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1092 N840_1093 N840_1093 yceQ yceQ 1151603 1151923 + yceQ gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1093 N840_1094 N840_1094 rluC rluC 1152041 1153000 + 23S rRNA pseudouridine(955%2C2504%2C2580) synthase gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1094 N840_1095 N840_1095 yceF yceF 1153112 1153696 - Maf-like protein gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1095 N840_1096 N840_1096 psrD psrD 1153690 1153858 + novel Novel sRNA%2C function unknown identified in a large scale screen ncRNA gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1096 N840_1097 N840_1097 yceD yceD 1153895 1154416 + conserved protein%2C DUF177 family gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1097 N840_1098 N840_1098 rpmF rpmF 1154468 1154641 + 50S ribosomal subunit protein L32 gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1098 N840_1099 N840_1099 plsX plsX 1154722 1155792 + putative phosphate acyltransferase glycerolphosphate auxotrophy in plsB background gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1099 N840_1100 N840_1100 fabH fabH 1155860 1156813 + 3-oxoacyl-[acyl-carrier-protein] synthase III 3-oxoacyl-[acyl-carrier-protein] synthase III%3B acetylCoA ACP transacylase gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1100 N840_1101 N840_1101 fabD fabD 1156829 1157758 + malonyl-CoA-[acyl-carrier-protein] transacylase gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1101 N840_1102 N840_1102 fabG fabG 1157771 1158505 + 3-oxoacyl-[acyl-carrier-protein] reductase gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1102 N840_1103 N840_1103 acpP acpP 1158716 1158952 + acyl carrier protein (ACP) acyl carrier protein gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1103 N840_1104 N840_1104 fabF fabF 1159040 1160281 + 3-oxoacyl-[acyl-carrier-protein] synthase II gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1104 N840_1105 N840_1105 pabC pabC 1160401 1161210 + 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex 4-amino-4-deoxychorismate lyase gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1105 N840_1106 N840_1106 yceG yceG 1161213 1162235 + septation protein%2C ampicillin sensitivity putative thymidylate kinase gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1106 N840_1107 N840_1107 tmk tmk 1162225 1162866 + thymidylate kinase gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1107 N840_1108 N840_1108 holB holB 1162863 1163867 + DNA polymerase III%2C delta prime subunit gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1108 N840_1109 N840_1109 ycfH ycfH 1163878 1164675 + putative DNAse gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1109 N840_1110 N840_1110 ptsG ptsG 1164970 1166403 + fused glucose-specific PTS enzymes: IIB component/IIC component PTS system%2C glucose-specific IIBC component gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1110 N840_1111 N840_1111 fhuE fhuE 1166463 1168652 - ferric-rhodotorulic acid outer membrane transporter outer membrane receptor for ferric iron uptake gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1111 N840_1112 N840_1112 hinT hinT 1168986 1169345 + purine nucleoside phosphoramidase%2C dadA activator protein gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1112 N840_1113 N840_1113 ycfL ycfL 1169348 1169725 + ycfL gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1113 N840_1114 N840_1114 lpoB lpoB 1169739 1170380 + outer membrane lipoprotein gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1114 N840_1115 N840_1115 thiK thiK 1170361 1171185 + thiamin kinase putative beta-glucosidase gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1115 N840_1116 N840_1116 nagZ nagZ 1171196 1172221 + beta N-acetyl-glucosaminidase gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1116 N840_1117 N840_1117 ycfP ycfP 1172244 1172786 + ycfP gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1117 N840_1118 N840_1118 ndh ndh 1173186 1174490 + respiratory NADH dehydrogenase 2/cupric reductase respiratory NADH dehydrogenase gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1118 N840_1119 N840_1119 ycfJ ycfJ 1174700 1175239 + ycfJ gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1119 N840_1120 N840_1120 ycfQ ycfQ 1175301 1175932 - Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1120 N840_1121 N840_1121 bhsA bhsA 1176173 1176430 + biofilm%2C cell surface and signaling protein gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1121 N840_1122 N840_1122 ycfS ycfS 1176512 1177474 - L%2CD-transpeptidase linking Lpp to murein gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1122 N840_1123 N840_1123 mfd mfd 1177618 1181064 - transcription-repair coupling factor transcription-repair coupling factor%3B mutation frequency decline gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1123 N840_1124 N840_1124 ycfT ycfT 1181192 1182265 - inner membrane protein gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1124 N840_1125 N840_1125 lolC lolC 1182527 1183726 + lipoprotein-releasing system transmembrane protein membrane component of ABC superfamily gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1125 N840_1126 N840_1126 lolD lolD 1183719 1184420 + outer membrane-specific lipoprotein transporter subunit putative ATP-binding component of a transport system gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1126 N840_1127 N840_1127 lolE lolE 1184420 1185664 + lipoprotein-releasing system transmembrane protein putative kinase%3B membrane component of ABC superfamily gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1127 N840_1128 N840_1128 nagK nagK 1185693 1186604 + N-acetyl-D-glucosamine kinase gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1128 N840_1129 N840_1129 cobB cobB 1186731 1187459 + deacetylase of acs and cheY%2C chemotaxis regulator putative nicotinic acid mononucleotide:5%2C6-dimethylbenzimidazole (DMB) phosphoribosyltransferase gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1129 N840_1130 N840_1130 ycfZ ycfZ 1187579 1188367 - inner membrane protein gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1130 N840_1131 N840_1131 ymfA ymfA 1188364 1188825 - conserved inner membrane protein gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1131 N840_1132 N840_1132 potD potD 1188883 1189929 - polyamine transporter subunit spermidine/putrescine periplasmic transport protein%3B periplasmic-binding component of ABC superfamily gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1132 N840_1133 N840_1133 potC potC 1189926 1190720 - polyamine transporter subunit spermidine/putrescine transport system permease%3B membrane component of ABC superfamily gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1133 N840_1134 N840_1134 potB potB 1190717 1191544 - polyamine transporter subunit spermidine/putrescine transport system permease%3B membrane component of ABC superfamily gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1134 N840_1135 N840_1135 potA potA 1191558 1192694 - polyamine transporter subunit ATP-binding component of spermidine/putrescine transport gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1135 N840_1136 N840_1136 pepT pepT 1192944 1194170 + peptidase T putative peptidase T gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1136 N840_1137 N840_1137 ycfD ycfD 1194219 1195340 - cupin superfamily protein gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1137 N840_1138 N840_1138 phoQ phoQ 1195416 1196876 - sensory histidine kinase in two-component regulatory system with PhoP sensor protein PhoQ gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1138 N840_1139 N840_1139 phoP phoP 1196876 1197547 - DNA-binding response regulator in two-component regulatory system with PhoQ transcriptional regulatory protein gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1139 N840_1140 N840_1140 purB purB 1197716 1199086 - adenylosuccinate lyase gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1140 N840_1141 N840_1141 hflD hflD 1199090 1199731 - putative lysogenization regulator gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1141 N840_1142 N840_1142 mnmA mnmA 1199767 1200873 - tRNA(Gln%2CLys%2CGlu) U34 2-thiouridylase%2C first step in mnm(5)-s(2)U34-tRNA synthesis gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1142 N840_1143 N840_1143 nudJ nudJ 1200927 1201388 - bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1143 N840_1144 N840_1144 rluE rluE 1201398 1202051 - 23S rRNA pseudouridine(2457) synthase gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1144 N840_1145 N840_1145 icd icd 1202223 1203473 + e14 prophage%3B isocitrate dehydrogenase%2C specific for NADP+ isocitrate dehydrogenase%2C specific for NADP+ gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1145 N840_1146 N840_1146 ymfD ymfD 1203967 1204632 - e14 prophage%3B predicted SAM-dependent methyltransferase gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1146 N840_1147 N840_1147 ymfE ymfE 1204633 1205337 - e14 prophage%3B predicted inner membrane protein gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1147 N840_1148 N840_1148 lit lit 1205795 1206688 + e14 prophage%3B cell death peptidase%2C inhibitor of T4 late gene expression phage T4 late gene expression%3B at locus of e14 element gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1148 N840_1149 N840_1149 intE intE 1206779 1207906 - e14 prophage%3B predicted integrase prophage e14 integrase gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1149 N840_1150 N840_1150 xisE xisE 1207887 1208132 - e14 prophage%3B predicted excisionase gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1150 N840_1151 N840_1151 ymfI ymfI 1208597 1208938 + e14 prophage%3B putative protein gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1151 N840_1152 N840_1152 ymfJ ymfJ 1208876 1209184 - e14 prophage%3B putative protein gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1152 N840_1153 N840_1153 cohE cohE 1209359 1210033 - e14 prophage%3B repressor protein phage e14 gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1153 N840_1154 N840_1154 croE croE 1210124 1210324 + e14 prophage%3B predicted DNA-binding transcriptional regulator gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1154 N840_1155 N840_1155 ymfL ymfL 1210368 1210925 + e14 prophage%3B predicted DNA-binding transcriptional regulator gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1155 N840_1156 N840_1156 ymfM ymfM 1210922 1211260 + e14 prophage%3B putative protein gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1156 N840_1157 N840_1157 oweE oweE 1211270 1211503 + pseudogene%2C lambda replication protein O homolog%3B CPS-53/KpLE1 prophage%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1157 N840_1158 N840_1158 aaaE aaaE 1211504 1212637 + pseudogene%2C phage terminase protein A family%2C e14 prophage%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1158 N840_1159 N840_1159 ymfR ymfR 1212649 1212831 + e14 prophage%3B putative protein gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1159 N840_1160 N840_1160 beeE beeE 1212831 1213242 + pseudogene%2C portal protein family%2C e14 prophage%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1160 N840_1161 N840_1161 jayE jayE 1213243 1214022 + pseudogene%2C e14 prophage%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1161 N840_1162 N840_1162 ymfQ ymfQ 1214013 1214597 + prohage e14 tail protein-like protein gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1162 N840_1163 N840_1163 stfP stfP 1214601 1215230 + e14 prophage%3B putative protein gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1163 N840_1164 N840_1164 tfaP tfaP 1215232 1215644 + Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1164 N840_1165 N840_1165 tfaE tfaE 1215617 1216218 - Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1165 N840_1166 N840_1166 stfE stfE 1216218 1216718 - pseudogene%2C e14 prophage%3B predicted side tail fiber protein fragment%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1166 N840_1167 N840_1167 pinE pinE 1216784 1217338 + e14 prophage%3B site-specific DNA recombinase inversion of adjacent DNA%3B at locus of e14 element gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1167 N840_1168 N840_1168 mcrA mcrA 1217445 1218278 + e14 prophage%3B 5-methylcytosine-specific restriction endonuclease B restriction of DNA at 5-methylcytosine residues%3B at locus of e14 element gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1168 N840_1169 N840_1169 icdC icdC 1218512 1218676 + conserved protein (pseudogene) pseudogene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1169 N840_1170 N840_1170 iraM iraM 1218779 1219102 - RpoS stabilzer during Mg starvation%2C anti-RssB factor gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1170 N840_1171 N840_1171 ycgX ycgX 1219802 1220206 - ycgX gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1171 N840_1172 N840_1172 bluR bluR 1220427 1221158 - repressor of blue light-responsive genes putative transcriptional regulator gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1172 N840_1173 N840_1173 bluF bluF 1221363 1222574 - anti-repressor for YcgE%2C blue light-responsive%3B FAD-binding%3B has c-di-GMP phosphodiesterase-like EAL domain%2C but does not degrade c-di-GMP gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1173 N840_1174 N840_1174 ycgZ ycgZ 1222888 1223124 + RcsB connector protein for regulation of biofilm and acid-resistance gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1174 N840_1175 N840_1175 ymgA ymgA 1223167 1223439 + RcsB connector protein for regulation of biofilm gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1175 N840_1176 N840_1176 ariR ariR 1223468 1223734 + RcsB connector protein for regulation of biofilm and acid-resistance gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1176 N840_1177 N840_1177 ymgC ymgC 1223847 1224095 + ymgC gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1177 N840_1178 N840_1178 ycgG ycgG 1224425 1225948 + putative membrane-anchored cyclic-di-GMP phosphodiesterase putative proteases gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1178 N840_1179 N840_1179 ymgF ymgF 1226080 1226298 + inner membrane division septum protein gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1179 N840_1180 N840_1180 ycgH ycgH 1226698 1229345 + pseudogene%3B putative ATP-binding component of a transport system%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1180 N840_1181 N840_1181 ymgD ymgD 1229402 1229731 - ymgD gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1181 N840_1182 N840_1182 ymgG ymgG 1229741 1230085 - conserved protein%2C UPF0757 family gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1182 N840_1183 N840_1183 ymgI ymgI 1230087 1230260 - ymgI gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1183 N840_1184 N840_1184 ymgJ ymgJ 1230361 1230546 + ymgJ gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1184 N840_1185 N840_1185 ycgI ycgI 1230661 1231004 + pseudogene%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1185 N840_1186 N840_1186 minE minE 1231376 1231642 - cell division topological specificity factor cell division topological specificity factor%2C reverses MinC inhibition of ftsZ ring formation gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1186 N840_1187 N840_1187 minD minD 1231646 1232458 - membrane ATPase of the MinC-MinD-MinE system cell division inhibitor%2C a membrane ATPase%2C activates minC gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1187 N840_1188 N840_1188 minC minC 1232482 1233177 - cell division inhibitor cell division inhibitor%2C inhibits ftsZ ring formation gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1188 N840_1189 N840_1189 ycgJ ycgJ 1233697 1234065 + ycgJ gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1189 N840_1190 N840_1190 pliG pliG 1234168 1234569 - pliG gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1190 N840_1191 N840_1191 ycgL ycgL 1234811 1235104 + ycgL gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1191 N840_1192 N840_1192 ycgM ycgM 1235176 1235835 + putative isomerase/hydrolase putative isomerase gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1192 N840_1193 N840_1193 ycgN ycgN 1235912 1236373 + UPF0153 family cysteine cluster protein%2C function unknown gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1193 N840_1194 N840_1194 hlyE hlyE 1236580 1237491 - hemolysin E gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1194 N840_1195 N840_1195 umuD umuD 1237864 1238283 + DNA polymerase V%2C subunit D SOS mutagenesis%3B error-prone repair%3B processed to UmuD'%3B forms complex with UmuC gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1195 N840_1196 N840_1196 umuC umuC 1238283 1239551 + DNA polymerase V%2C subunit C SOS mutagenesis and repair gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1196 N840_1197 N840_1197 dsbB dsbB 1239597 1240127 - oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1197 N840_1198 N840_1198 nhaB nhaB 1240273 1241814 - sodium:proton antiporter Na+/H+ antiporter%2C pH independent gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1198 N840_1199 N840_1199 fadR fadR 1242035 1242754 + DNA-binding transcriptional dual regulator of fatty acid metabolism negative regulator for fad regulon%2C and positive activator of fabA gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1199 N840_1200 N840_1200 ycgB ycgB 1242806 1244338 - ycgB gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1200 N840_1201 N840_1201 dadA dadA 1244668 1245966 + D-amino acid dehydrogenase D-amino acid dehydrogenase subunit gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1201 N840_1202 N840_1202 dadX dadX 1245976 1247046 + alanine racemase 2%2C PLP-binding protein alanine racemase 2%2C catabolic gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1202 N840_1203 N840_1203 cvrA cvrA 1247432 1249168 - putative cation/proton antiporter gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1203 N840_1204 N840_1204 ldcA ldcA 1249263 1250177 - murein tetrapeptide carboxypeptidase%3B LD-carboxypeptidase A gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1204 N840_1205 N840_1205 emtA emtA 1250277 1250888 + lytic murein endotransglycosylase E murein transglycosylase E gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1205 N840_1206 N840_1206 ycgR ycgR 1250890 1251624 - flagellar velocity braking protein%2C c-di-GMP-regulated gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1206 N840_1207 N840_1207 ymgE ymgE 1251825 1252079 + putative inner membrane protein transglycosylase asociated protein gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1207 N840_1208 N840_1208 ycgY ycgY 1252257 1252697 + ycgY gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1208 N840_1209 N840_1209 treA treA 1252776 1254473 - periplasmic trehalase trehalase%2C periplasmic gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1209 N840_1210 N840_1210 dhaM dhaM 1254793 1256211 - fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component PTS hybrid protein gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1210 N840_1211 N840_1211 dhaL dhaL 1256222 1256854 - dihydroxyacetone kinase%2C C-terminal domain protein gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1211 N840_1212 N840_1212 dhaK dhaK 1256865 1257936 - Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1212 N840_1213 N840_1213 dhaR dhaR 1258164 1260083 + DNA-binding transcription activator of the dhaKLM operon gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1213 N840_1214 N840_1214 ycgV ycgV 1260183 1263050 - putative adhesin putative adhesion and penetration protein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1214 N840_1215 N840_1215 ychF ychF 1263819 1264910 - catalase inhibitor protein%3B ATPase%2C K+-dependent%2C ribosome-associated putative GTP-binding protein gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1215 N840_1216 N840_1216 pth pth 1265027 1265611 - peptidyl-tRNA hydrolase gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1216 N840_1217 N840_1217 ychH ychH 1265889 1266167 + putative inner membrane protein gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1217 N840_1218 N840_1218 dauA dauA 1266222 1267901 - C4-dicarboxylic acid transporter putative sulfate transporter gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1218 N840_1219 N840_1219 prs prs 1268026 1268973 - phosphoribosylpyrophosphate synthase phosphoribosylpyrophosphate synthetase gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1219 N840_1220 N840_1220 ispE ispE 1269124 1269975 - 4-diphosphocytidyl-2-C-methylerythritol kinase gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1220 N840_1221 N840_1221 lolB lolB 1269975 1270598 - lipoprotein localization factor outer-membrane lipoprotein gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1221 N840_1222 N840_1222 hemA hemA 1270812 1272068 + glutamyl tRNA reductase glutamyl-tRNA reductase gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1222 N840_1223 N840_1223 prmC prmC 1272110 1272943 + N5-glutamine methyltransferase%2C modifies release factors RF-1 and RF-2 possible protoporphyrinogen oxidase gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1223 N840_1224 N840_1224 ychQ ychQ 1272940 1273332 + putative inner membrane protein%2C SIRB family gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1224 N840_1225 N840_1225 ychA ychA 1273336 1274145 + ychA gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1225 N840_1226 N840_1226 kdsA kdsA 1274181 1275035 + 3-deoxy-D-manno-octulosonate 8-phosphate synthase 2-dehydro-3-deoxyphosphooctulonate aldolase gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1226 N840_1227 N840_1227 ldrA ldrA 1275184 1275291 - toxic polypeptide%2C small small toxic polypeptide gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1227 N840_1228 N840_1228 rdlA rdlA 1275339 1275405 + sRNA antisense regulator affects LdrA translation%3B proposed addiction module in LDR-A repeat%2C with toxic peptide LdrA antisense RNA%2C trans-acting regulator of ldrA translation gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1228 N840_1229 N840_1229 ldrB ldrB 1275719 1275826 - toxic polypeptide%2C small small toxic polypeptide gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1229 N840_1230 N840_1230 rdlB rdlB 1275874 1275939 + sRNA antisense regulator affects LdrB translation%3B proposed addiction module in LDR-B repeat%2C with toxic peptide LdrB antisense RNA%2C trans-acting regulator of ldrB translation gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1230 N840_1231 N840_1231 ldrC ldrC 1276254 1276361 - toxic polypeptide%2C small small toxic polypeptide gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1231 N840_1232 N840_1232 rdlC rdlC 1276409 1276476 + sRNA antisense regulator affects LdrC translation%3B proposed addiction module in LDR-C repeat%2C with toxic peptide LdrC antisense RNA%2C trans-acting regulator of ldrC translation gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1232 N840_1233 N840_1233 chaA chaA 1276765 1277865 - calcium/sodium:proton antiporter sodium-calcium/proton antiporter gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1233 N840_1234 N840_1234 chaB chaB 1278135 1278365 + cation transport regulator gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1234 N840_1235 N840_1235 chaC chaC 1278523 1279218 + cation transport regulator gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1235 N840_1236 N840_1236 ychN ychN 1279262 1279615 - ychN gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1236 N840_1237 N840_1237 ychO ychO 1279800 1281194 + putative invasin conserved protein%2C invasin-like gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1237 N840_1238 N840_1238 narL narL 1281195 1281845 - DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) pleiotrophic regulation of anaerobic respiration: response regulator for nar%2C frd%2C dms and tor genes gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1238 N840_1239 N840_1239 narX narX 1281838 1283634 - sensory histidine kinase in two-component regulatory system with NarL nitrate/nitrate sensor%2C histidine protein kinase acts on NarL regulator gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1239 N840_1240 N840_1240 narK narK 1283973 1285364 + nitrate/nitrite transporter nitrite extrusion protein gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1240 N840_1241 N840_1241 narG narG 1285880 1289623 + nitrate reductase 1%2C alpha subunit gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1241 N840_1242 N840_1242 narH narH 1289620 1291158 + nitrate reductase 1%2C beta (Fe-S) subunit nitrate reductase 1%2C beta subunit gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1242 N840_1243 N840_1243 narJ narJ 1291155 1291865 + molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 nitrate reductase 1%2C delta subunit%2C assembly function gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1243 N840_1244 N840_1244 narI narI 1291865 1292542 + nitrate reductase 1%2C gamma (cytochrome b(NR)) subunit nitrate reductase 1%2C cytochrome b(NR)%2C gamma subunit gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1244 N840_1245 N840_1245 rttR rttR 1293082 1293252 - rtT sRNA%2C processed from tyrT transcript rtT RNA may modulate the stringent response%3B released from primary tyrT transcript during tRNA processing%3B encodes putative Tpr protein pseudogene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1245 N840_1246 N840_1246 tpr tpr 1293103 1293192 - a protamine-like protein%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1246 N840_1247 N840_1247 tyrV tyrV 1293260 1293344 - tRNA-Tyr anticodon: GUA tRNA gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1247 N840_1248 N840_1248 tyrT tyrT 1293554 1293638 - tRNA-Tyr anticodon: GUA tRNA gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1248 N840_1249 N840_1249 purU purU 1293798 1294640 - formyltetrahydrofolate hydrolase formyltetrahydrofolate deformylase%3B for purT-dependent FGAR synthesis gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1249 N840_1250 N840_1250 ychJ ychJ 1294690 1295148 - conserved protein%2C UPF0225 family gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1250 N840_1251 N840_1251 rssA rssA 1295261 1296166 + putative phospholipase%2C patatin-like family gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1251 N840_1252 N840_1252 rssB rssB 1296258 1297271 + response regulator binding RpoS to initiate proteolysis by ClpXP%3B required for the PcnB-degradosome interaction during stationary phase Hnr protein gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1252 N840_1253 N840_1253 galU galU 1297473 1298381 + glucose-1-phosphate uridylyltransferase gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1253 N840_1254 N840_1254 hns hns 1298525 1298938 - global DNA-binding transcriptional dual regulator H-NS DNA-binding protein HLP-II (HU%2C BH2%2C HD%2C NS)%3B pleiotropic regulator gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1254 N840_1255 N840_1255 tdk tdk 1299543 1300160 + thymidine kinase/deoxyuridine kinase thymidine kinase gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1255 N840_1256 N840_1256 insZ insZ 1300442 1301338 - pseudogene%2C transposase homolog pseudogene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1256 N840_1257 N840_1257 adhE adhE 1301462 1304137 - fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase%3B pyruvate-formate-lyase deactivase gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1257 N840_1258 N840_1258 ychE ychE 1304614 1305261 + putative inner membrane protein putative channel protein gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1258 N840_1259 N840_1259 oppA oppA 1305999 1307630 + oligopeptide transporter subunit oligopeptide transport%3B periplasmic binding protein%3B periplasmic-binding component of ABC superfamily gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1259 N840_1260 N840_1260 oppB oppB 1307716 1308636 + oligopeptide transporter subunit oligopeptide transport permease protein%3B membrane component of ABC superfamily gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1260 N840_1261 N840_1261 oppC oppC 1308651 1309559 + oligopeptide transporter subunit homolog of Salmonella oligopeptide transport permease protein%3B membrane component of ABC superfamily gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1261 N840_1262 N840_1262 oppD oppD 1309571 1310584 + oligopeptide transporter subunit homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1262 N840_1263 N840_1263 oppF oppF 1310581 1311585 + oligopeptide transporter subunit homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1263 N840_1264 N840_1264 yciU yciU 1311638 1311967 - conserved protein%2C UPF0263 family gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1264 N840_1265 N840_1265 clsA clsA 1312002 1313462 - cardiolipin synthase 1 cardiolipin synthase%2C a major membrane phospholipid%3B novobiocin sensitivity gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1265 N840_1266 N840_1266 yciY yciY 1313605 1313778 + yciY gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1266 N840_1267 N840_1267 kch kch 1313833 1315086 - voltage-gated potassium channel putative potassium channel protein (VIC family) gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1267 N840_1268 N840_1268 yciI yciI 1315386 1315682 - putative enzyme gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1268 N840_1269 N840_1269 tonB tonB 1315906 1316625 + membrane spanning protein in TonB-ExbB-ExbD transport complex energy transducer%3B uptake of iron%2C cyanocobalimin%3B sensitivity to phages%2C colicins gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1269 N840_1270 N840_1270 yciA yciA 1316665 1317063 - acyl-CoA esterase gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1270 N840_1271 N840_1271 yciB yciB 1317168 1317707 - putative inner membrane protein gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1271 N840_1272 N840_1272 yciC yciC 1317737 1318480 - inner membrane protein%2C UPF0259 family gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1272 N840_1273 N840_1273 ompW ompW 1318837 1319475 + outer membrane protein W putative outer membrane protein gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1273 N840_1274 N840_1274 yciE yciE 1319535 1320041 - putative rubrerythrin/ferritin-like metal-binding protein gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1274 N840_1275 N840_1275 yciF yciF 1320087 1320587 - putative rubrerythrin/ferritin-like metal-binding protein putative structural proteins gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1275 N840_1276 N840_1276 yciG yciG 1320673 1320852 - yciG gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1276 N840_1277 N840_1277 trpA trpA 1321233 1322039 - tryptophan synthase%2C alpha subunit tryptophan synthase%2C alpha protein gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1277 N840_1278 N840_1278 trpB trpB 1322039 1323232 - tryptophan synthase%2C beta subunit tryptophan synthase%2C beta protein gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1278 N840_1279 N840_1279 trpC trpC 1323244 1324602 - fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1279 N840_1280 N840_1280 trpD trpD 1324606 1326201 - fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase anthranilate synthase component II%2C glutamine amidotransferase and phosphoribosylanthranilate transferase gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1280 N840_1281 N840_1281 trpE trpE 1326201 1327763 - component I of anthranilate synthase anthranilate synthase component I gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1281 N840_1282 N840_1282 trpL trpL 1327855 1327899 - trp operon leader peptide gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1282 N840_1283 N840_1283 yciV yciV 1328037 1328918 + yciV putative enzymes gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1283 N840_1284 N840_1284 yciO yciO 1328915 1329535 + putative RNA binding protein gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1284 N840_1285 N840_1285 yciQ yciQ 1329563 1331458 + putative inner membrane protein gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1285 N840_1286 N840_1286 rluB rluB 1331669 1332544 + 23S rRNA pseudouridine(2605) synthase gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1286 N840_1287 N840_1287 btuR btuR 1332584 1333174 - cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase cob(I)alamin adenolsyltransferase gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1287 N840_1288 N840_1288 yciK yciK 1333171 1333929 - putative oxoacyl-(acyl carrier protein) reductase%2C EmrKY-TolC system putative oxidoreductase gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1288 N840_1289 N840_1289 sohB sohB 1334149 1335198 + putative inner membrane peptidase%3B multicopy suppressor of htrA(degP) putative protease gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1289 N840_1290 N840_1290 yciN yciN 1335234 1335485 - DUF2498 protein YciN gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1290 N840_1291 N840_1291 topA topA 1335865 1338462 + DNA topoisomerase I%2C omega subunit DNA topoisomerase type I%2C omega protein gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1291 N840_1292 N840_1292 cysB cysB 1338672 1339646 + DNA-binding transcriptional dual regulator%2C O-acetyl-L-serine-binding protein positive transcriptional regulator for cysteine regulon gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1292 N840_1293 N840_1293 ymiA ymiA 1339977 1340105 + ymiA gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1293 N840_1294 N840_1294 yciX yciX 1340108 1340275 + yciX gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1294 N840_1295 N840_1295 acnA acnA 1340648 1343323 + aconitate hydratase 1 aconitate hydrase 1 gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1295 N840_1296 N840_1296 ribA ribA 1343387 1343977 - GTP cyclohydrolase II gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1296 N840_1297 N840_1297 pgpB pgpB 1344147 1344911 + phosphatidylglycerophosphatase B non-essential phosphatidylglycerophosphate phosphatase%2C membrane bound gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1297 N840_1298 N840_1298 yciS yciS 1345060 1345368 + DUF1049 family inner membrane protein%2C function unknown gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1298 N840_1299 N840_1299 yciM yciM 1345375 1346544 + TPR-repeats-containing protein putative heat shock protein gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1299 N840_1300 N840_1300 pyrF pyrF 1346738 1347475 + orotidine-5'-phosphate decarboxylase gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1300 N840_1301 N840_1301 yciH yciH 1347475 1347801 + initiation factor function partial mimic%2C SUI1 family gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1301 N840_1302 N840_1302 osmB osmB 1347927 1348145 - lipoprotein osmotically inducible lipoprotein gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1302 N840_1303 N840_1303 yciT yciT 1348414 1349163 - global regulator of transcription%3B DeoR family putative DEOR-type transcriptional regulator gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1303 N840_1304 N840_1304 yciZ yciZ 1349253 1349426 - yciZ gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1304 N840_1305 N840_1305 gmr gmr 1349574 1351559 - cyclic-di-GMP phosphodiesterase%3B csgD regulator%3B modulator of Rnase II stability gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1305 N840_1306 N840_1306 ymiB ymiB 1351613 1351717 + ymiB expressed protein gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1306 N840_1307 N840_1307 rnb rnb 1351795 1353729 - ribonuclease II RNase II%2C mRNA degradation gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1307 N840_1308 N840_1308 yciW yciW 1353797 1354924 - putative oxidoreductase gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1308 N840_1309 N840_1309 fabI fabI 1355068 1355856 - enoyl-[acyl-carrier-protein] reductase%2C NADH-dependent enoyl-[acyl-carrier-protein] reductase (NADH) gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1309 N840_1310 N840_1310 ycjD ycjD 1356224 1356577 - ycjD gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1310 N840_1311 N840_1311 sapF sapF 1356645 1357451 - antimicrobial peptide transport ABC system ATP-binding protein putative ATP-binding protein of peptide transport system gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1311 N840_1312 N840_1312 sapD sapD 1357453 1358445 - antimicrobial peptide transport ABC system ATP-binding protein putative ATP-binding protein of peptide transport system gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1312 N840_1313 N840_1313 sapC sapC 1358445 1359335 - antimicrobial peptide transport ABC transporter permease homolog of Salmonella peptide transport permease protein%3B membrane component of ABC superfamily gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1313 N840_1314 N840_1314 sapB sapB 1359322 1360287 - antimicrobial peptide transport ABC transporter permease homolog of Salmonella peptide transport permease protein%3B membrane component of ABC superfamily gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1314 N840_1315 N840_1315 sapA sapA 1360284 1361927 - antimicrobial peptide transport ABC transporter periplasmic binding protein homolog of Salmonella peptide transport periplasmic protein%3B periplasmic-binding component of ABC superfamily gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1315 N840_1316 N840_1316 ymjA ymjA 1362240 1362485 - ymjA gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1316 N840_1317 N840_1317 puuP puuP 1362619 1364004 - putrescine importer putative amino acid/amine transport protein gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1317 N840_1318 N840_1318 puuA puuA 1364307 1365725 - gamma-Glu-putrescine synthase putative glutamine synthetase gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1318 N840_1319 N840_1319 puuD puuD 1365937 1366701 + gamma-Glu-GABA hydrolase probable amidotransferase subunit gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1319 N840_1320 N840_1320 puuR puuR 1366728 1367285 + DNA-binding transcriptional repressor for the puu divergon gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1320 N840_1321 N840_1321 puuC puuC 1367560 1369047 + gamma-Glu-gamma-aminobutyraldehyde dehydrogenase%2C NAD(P)H-dependent aldehyde dehydrogenase%2C prefers NADP over NAD gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1321 N840_1322 N840_1322 puuB puuB 1369049 1370329 + gamma-Glu-putrescine oxidase%2C FAD/NAD(P)-binding protein probable oxidoreductase gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1322 N840_1323 N840_1323 puuE puuE 1370367 1371632 + GABA aminotransferase%2C PLP-dependent 4-aminobutyrate aminotransferase gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1323 N840_1324 N840_1324 pspF pspF 1371752 1372729 - DNA-binding transcriptional activator psp operon transcriptional activator gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1324 N840_1325 N840_1325 pspA pspA 1372896 1373564 + regulatory protein for phage-shock-protein operon phage shock protein%2C inner membrane protein gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1325 N840_1326 N840_1326 pspB pspB 1373618 1373842 + DNA-binding transcriptional regulator of psp operon phage shock protein gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1326 N840_1327 N840_1327 pspC pspC 1373842 1374201 + DNA-binding transcriptional activator phage shock protein: activates phage shock-protein expression gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1327 N840_1328 N840_1328 pspD pspD 1374210 1374431 + peripheral inner membrane phage-shock protein phage shock protein gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1328 N840_1329 N840_1329 pspE pspE 1374506 1374820 + thiosulfate:cyanide sulfurtransferase (rhodanese) phage shock protein gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1329 N840_1330 N840_1330 ycjM ycjM 1375032 1376711 + putative glucosyltransferase putative polysaccharide hydrolase gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1330 N840_1331 N840_1331 ycjN ycjN 1376725 1378017 + putative sugar transporter subunit: periplasmic-binding component of ABC superfamily gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1331 N840_1332 N840_1332 ycjO ycjO 1378038 1378919 + putative sugar transporter subunit: membrane component of ABC superfamily putative binding-protein dependent transport protein gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1332 N840_1333 N840_1333 ycjP ycjP 1378906 1379748 + putative sugar transporter subunit: membrane component of ABC superfamily putative transport system permease protein gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1333 N840_1334 N840_1334 ycjQ ycjQ 1379779 1380831 + putative oxidoreductase%2C Zn-dependent and NAD(P)-binding protein putative oxidoreductase gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1334 N840_1335 N840_1335 ycjR ycjR 1380850 1381638 + putative enzyme gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1335 N840_1336 N840_1336 ycjS ycjS 1381648 1382703 + putative oxidoreductase%2C NADH-binding protein putative dehydrogenase gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1336 N840_1337 N840_1337 ycjT ycjT 1382700 1384967 + putative hydrolase gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1337 N840_1338 N840_1338 ycjU ycjU 1384964 1385623 + beta-phosphoglucomutase putative beta-phosphoglucomutase gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1338 N840_1339 N840_1339 ycjV ycjV 1385637 1386718 + pseudogene%3B putative ATP-binding component of a transport system pseudogene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1339 N840_1340 N840_1340 ompG ompG 1386763 1387668 + outer membrane porin G outer membrane protein gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1340 N840_1341 N840_1341 ycjW ycjW 1387779 1388777 - putative DNA-binding transcriptional regulator putative LACI-type transcriptional regulator gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1341 N840_1342 N840_1342 ycjX ycjX 1388933 1390330 + conserved protein with nucleoside triphosphate hydrolase domain putative EC 2.1 enzymes gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1342 N840_1343 N840_1343 ycjF ycjF 1390327 1391388 + inner membrane protein%2C UPF0283 family gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1343 N840_1344 N840_1344 tyrR tyrR 1391536 1393077 + DNA-binding transcriptional dual regulator%2C tyrosine-binding protein transcriptional regulation of aroF%2C aroG%2C tyrA and aromatic amino acid transport gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1344 N840_1345 N840_1345 tpx tpx 1393121 1393627 - lipid hydroperoxide peroxidase thiol peroxidase gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1345 N840_1346 N840_1346 ycjG ycjG 1393746 1394711 + putative muconate cycloisomerase I%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1346 N840_1347 N840_1347 mpaA mpaA 1394686 1395414 - murein peptide amidase A putative carboxypeptidase gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1347 N840_1348 N840_1348 ymjC ymjC 1395541 1395678 - pseudogene%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1348 N840_1349 N840_1349 ymjD ymjD 1395684 1395749 - expressed protein pseudogene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1349 N840_1350 N840_1350 ycjY ycjY 1395749 1396669 - putative hydrolase gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1350 N840_1351 N840_1351 ycjZ ycjZ 1396807 1397706 + putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1351 N840_1352 N840_1352 mppA mppA 1398043 1399656 + murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit periplasmic-binding component of ABC superfamily gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1352 N840_1353 N840_1353 ynaI ynaI 1399707 1400738 - mechanosensitive channel protein%2C very small conductance gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1353 N840_1354 N840_1354 insH1 insH1 1400892 1401908 + IS5 transposase and trans-activator gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1354 N840_1355 N840_1355 ynaJ ynaJ 1402181 1402438 + putative inner membrane protein%2C DUF2534 family gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1355 N840_1356 N840_1356 uspE uspE 1402488 1403438 - stress-induced protein gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1356 N840_1357 N840_1357 fnr fnr 1403590 1404342 - DNA-binding transcriptional dual regulator%2C global regulator of anaerobic growth transcriptional regulation of aerobic%2C anaerobic respiration%2C osmotic balance gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1357 N840_1358 N840_1358 ogt ogt 1404537 1405052 - O-6-alkylguanine-DNA:cysteine-protein methyltransferase O-6-alkylguanine-DNA/cysteine-protein methyltransferase gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1358 N840_1359 N840_1359 abgT abgT 1405063 1406589 - p-aminobenzoyl-glutamate transporter%3B membrane protein gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1359 N840_1360 N840_1360 abgB abgB 1406626 1408071 - p-aminobenzoyl-glutamate hydrolase%2C B subunit gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1360 N840_1361 N840_1361 abgA abgA 1408071 1409381 - p-aminobenzoyl-glutamate hydrolase%2C A subunit gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1361 N840_1362 N840_1362 abgR abgR 1409557 1410465 + putative DNA-binding transcriptional regulator of abgABT operon putative transcriptional regulator LYSR-type gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1362 N840_1363 N840_1363 mcaS mcaS 1410472 1410567 - motility and biofilm regulator sRNA identified in a large scale screen gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1363 N840_1364 N840_1364 smrA smrA 1410795 1411358 + DNA endonuclease gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1364 N840_1365 N840_1365 ydaM ydaM 1411379 1412611 - diguanylate cyclase%2C csgD regulator gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1365 N840_1366 N840_1366 ydaN ydaN 1412866 1413849 + putative Zn(II) transporter gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1366 N840_1367 N840_1367 fnrS fnrS 1413945 1414066 + FNR-activated anaerobic sRNA antisense regulator down regulates cydDC%2C metE%2C sodA%2C sodB%2C Hfq-dependent%3B mediates negative FNR regulation gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1367 N840_1368 N840_1368 dbpA dbpA 1414327 1415700 + ATP-dependent RNA helicase%2C specific for 23S rRNA ATP-dependent RNA helicase gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1368 N840_1369 N840_1369 ttcA ttcA 1415829 1416764 - tRNA 2-thiocytidine biosynthesis protein gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1369 N840_1370 N840_1370 intR intR 1416816 1418051 - Rac prophage%3B integrase gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1370 N840_1371 N840_1371 ydaQ ydaQ 1418053 1418268 - Rac prophage%3B conserved protein putative lambdoid prophage Rac excisionase gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1371 N840_1372 N840_1372 rcbA rcbA 1418347 1418556 - double-strand break reduction protein%2C Rac prophage gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1372 N840_1373 N840_1373 ralR ralR 1418549 1418743 - Rac prophage%3B restriction alleviation protein restriction alleviation and modification enhancement gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1373 N840_1374 N840_1374 recT recT 1418800 1419609 - Rac prophage%3B recombination and repair protein recombinase%2C DNA renaturation gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1374 N840_1375 N840_1375 recE recE 1419602 1422202 - Rac prophage%3B exonuclease VIII%2C 5' -> 3' specific dsDNA exonuclease exonuclease VIII%2C ds DNA exonuclease%2C 5' --> 3' specific gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1375 N840_1376 N840_1376 racC racC 1422304 1422579 - Rac prophage%3B putative protein RacC protein gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1376 N840_1377 N840_1377 ydaE ydaE 1422654 1422824 - Rac prophage%3B conserved protein gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1377 N840_1378 N840_1378 kilR kilR 1422824 1423045 - Rac prophage%3B inhibitor of ftsZ%2C killing protein Kil protein (killing function) of lambdoid prophage Rac gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1378 N840_1379 N840_1379 sieB sieB 1423487 1423975 + Rac prophage%3B phage superinfection exclusion protein phage superinfection exclusion protein gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1379 N840_1380 N840_1380 ydaF ydaF 1423972 1424127 - Rac prophage%3B putative protein gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1380 N840_1381 N840_1381 ydaG ydaG 1424138 1424272 - Rac prophage%3B putative protein gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1381 N840_1382 N840_1382 racR racR 1424581 1425057 - Rac prophage%3B predicted DNA-binding transcriptional regulator gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1382 N840_1383 N840_1383 ydaS ydaS 1425181 1425477 + Rac prophage%3B predicted DNA-binding transcriptional regulator gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1383 N840_1384 N840_1384 ydaT ydaT 1425500 1425922 + Rac prophage%3B putative protein gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1384 N840_1385 N840_1385 ydaU ydaU 1425935 1426792 + Rac prophage%3B conserved protein gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1385 N840_1386 N840_1386 ydaV ydaV 1426799 1427545 + Rac prophage%3B predicted DNA replication protein putative DNA replication factor gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1386 N840_1387 N840_1387 ydaW ydaW 1427517 1428016 + Rac prophage%3B pseudogene%2C DNA-binding protein homoolgy%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1387 N840_1388 N840_1388 rzpR rzpR 1428017 1428460 + pseudogene%2C Rac prophage%3B predicted defective peptidase%3BPhage or Prophage Related%3B putative Rac prophage endopeptidase%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1388 N840_1389 N840_1389 rzoR rzoR 1428216 1428401 + Rac prophage%3B predicted lipoprotein gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1389 N840_1390 N840_1390 trkG trkG 1428598 1430055 + Rac prophage%3B potassium transporter subunit gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1390 N840_1391 N840_1391 ynaK ynaK 1430193 1430456 + Rac prophage%3B conserved protein gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1391 N840_1392 N840_1392 ydaY ydaY 1430446 1430898 + pseudogene%2C Rac prophage%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1392 N840_1393 N840_1393 ynaA ynaA 1431270 1432202 + Rac prophage%3B pseudogene%2C tail protein homology%3BPhage or Prophage Related%3B putative alpha helix protein%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1393 N840_1394 N840_1394 lomR lomR 1432205 1433800 + pseudogene%2C Rac prophage lom homolog%3BPhage or Prophage Related%3B interrupted by IS5 and N-ter deletion%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1394 N840_1395 N840_1395 insH1 insH1 1432562 1433542 - IS5 transposase and trans-activator%3BIS%2C phage%2C Tn%3B Transposon-related functions%3B extrachromosomal%3B transposon related pseudogene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1395 N840_1396 N840_1396 stfR stfR 1433865 1437227 + Rac prophage%3B predicted tail fiber protein gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1396 N840_1397 N840_1397 tfaR tfaR 1437227 1437802 + Rac prophage%3B predicted tail fiber assembly protein tail fiber assembly protein homolog from lambdoid prophage Rac gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1397 N840_1398 N840_1398 pinR pinR 1437900 1438490 - Rac prophage%3B predicted site-specific recombinase gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1398 N840_1399 N840_1399 ynaE ynaE 1438807 1439040 - cold shock protein%2C function unknown%2C Rac prophage gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1399 N840_1400 N840_1400 ttcC ttcC 1439774 1439824 - pseudogene%2C prophage Rac integration site ttcA duplication%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1400 N840_1401 N840_1401 uspF uspF 1440001 1440435 - stress-induced protein%2C ATP-binding protein putative filament protein gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1401 N840_1402 N840_1402 ompN ompN 1440576 1441709 - outer membrane pore protein N%2C non-specific gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1402 N840_1403 N840_1403 micC micC 1441937 1442045 + sRNA antisense regulator of OmpC translation%2C Hfq-dependent regulatory antisense RNA affecting ompC expression gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1403 N840_1404 N840_1404 ydbK ydbK 1442076 1445600 - fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein putative oxidoreductase%2C Fe-S subunit gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1404 N840_1405 N840_1405 ydbJ ydbJ 1445874 1446140 + putative lipoprotein%2C DUF333 family gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1405 N840_1406 N840_1406 hslJ hslJ 1446137 1446559 - heat-inducible lipoprotein involved in novobiocin resistance heat shock protein hslJ gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1406 N840_1407 N840_1407 ldhA ldhA 1446670 1447659 - fermentative D-lactate dehydrogenase%2C NAD-dependent gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1407 N840_1408 N840_1408 ydbH ydbH 1447867 1450506 + ydbH gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1408 N840_1409 N840_1409 ynbE ynbE 1450503 1450688 + lipoprotein gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1409 N840_1410 N840_1410 ydbL ydbL 1450696 1451022 + ydbL gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1410 N840_1411 N840_1411 feaR feaR 1451194 1452099 - DNA-binding transcriptional activator for tynA and feaB regulatory protein for 2-phenylethylamine catabolism gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1411 N840_1412 N840_1412 feaB feaB 1452335 1453834 + phenylacetaldehyde dehydrogenase gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1412 N840_1413 N840_1413 tynA tynA 1453892 1456165 - tyramine oxidase%2C copper-requiring copper amine oxidase (tyramine oxidase) gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1413 N840_1414 N840_1414 paaZ paaZ 1456413 1458458 - fused oxepin-CoA hydrolase/3-oxo-5%2C6-dehydrosuberyl-CoA semialdehyde dehydrogenase gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1414 N840_1415 N840_1415 paaA paaA 1458743 1459672 + ring 1%2C2-phenylacetyl-CoA epoxidase subunit gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1415 N840_1416 N840_1416 paaB paaB 1459684 1459971 + ring 1%2C2-phenylacetyl-CoA epoxidase possible subunit%2C not required for in vitro activity gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1416 N840_1417 N840_1417 paaC paaC 1459980 1460726 + ring 1%2C2-phenylacetyl-CoA epoxidase subunit gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1417 N840_1418 N840_1418 paaD paaD 1460741 1461238 + ring 1%2C2-phenylacetyl-CoA epoxidase subunit gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1418 N840_1419 N840_1419 paaE paaE 1461246 1462316 + ring 1%2C2-phenylacetyl-CoA epoxidase%2C NAD(P)H oxidoreductase component gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1419 N840_1420 N840_1420 paaF paaF 1462313 1463080 + 2%2C3-dehydroadipyl-CoA hydratase gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1420 N840_1421 N840_1421 paaG paaG 1463080 1463868 + 1%2C2-epoxyphenylacetyl-CoA isomerase%2C oxepin-CoA-forming gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1421 N840_1422 N840_1422 paaH paaH 1463870 1465297 + 3-hydroxyadipyl-CoA dehydrogenase%2C NAD+-dependent gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1422 N840_1423 N840_1423 paaI paaI 1465287 1465709 + thioesterase%2C most active with ring-hydroxylated phenylacetyl-coenzyme A thioesters gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1423 N840_1424 N840_1424 paaJ paaJ 1465709 1466914 + 3-oxoadipyl-CoA/3-oxo-5%2C6-dehydrosuberyl-CoA thiolase gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1424 N840_1425 N840_1425 paaK paaK 1466941 1468254 + phenylacetyl-CoA ligase gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1425 N840_1426 N840_1426 paaX paaX 1468355 1469305 + DNA-binding transcriptional repressor of phenylacetic acid degradation paa operon%2C phenylacetyl-CoA inducer gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1426 N840_1427 N840_1427 paaY paaY 1469287 1469877 + putative hexapeptide repeat acetyltransferase gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1427 N840_1428 N840_1428 ynbG ynbG 1469981 1470046 - ynbG expressed protein gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1428 N840_1429 N840_1429 ydbA ydbA 1470208 1478829 + pseudogene%2C autotransporter homolog%3B interrupted by IS2 and IS30 pseudogene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1429 N840_1430 N840_1430 insD1 insD1 1472737 1473642 - IS2 transposase TnpB gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1430 N840_1431 N840_1431 insC1 insC1 1473600 1473965 - IS2 repressor TnpA gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1431 N840_1432 N840_1432 insI1 insI1 1474174 1475325 + IS30 transposase gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1432 N840_1433 N840_1433 ydbC ydbC 1479037 1479897 + putative oxidoreductase%2C NAD(P)-binding protein putative dehydrogenase gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1433 N840_1434 N840_1434 ydbD ydbD 1479960 1482266 + putative PF10971 family periplasmic methylglyoxal resistance protein gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1434 N840_1435 N840_1435 ynbA ynbA 1482437 1483042 + inner membrane protein gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1435 N840_1436 N840_1436 ynbB ynbB 1483042 1483938 + putative CDP-diglyceride synthase putative phosphatidate cytidiltransferase gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1436 N840_1437 N840_1437 ynbC ynbC 1483954 1485711 + putative hydrolase gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1437 N840_1438 N840_1438 ynbD ynbD 1485725 1487017 + putative phosphatase inner membrane protein putative enzymes gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1438 N840_1439 N840_1439 azoR azoR 1487071 1487676 - NADH-azoreductase%2C FMN-dependent acyl carrier protein phosphodiesterase gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1439 N840_1440 N840_1440 hrpA hrpA 1487877 1491779 + putative ATP-dependent helicase helicase%2C ATP-dependent gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1440 N840_1441 N840_1441 ydcF ydcF 1492051 1492851 + conserved SAM-binding protein%2C DUF218 family gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1441 N840_1442 N840_1442 aldA aldA 1493048 1494487 + aldehyde dehydrogenase A%2C NAD-linked aldehyde dehydrogenase%2C NAD-linked gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1442 N840_1443 N840_1443 gapC gapC 1494529 1495529 - pseudogene%2C GAP dehydrogenase%3B glyceraldehyde-3-phosphate dehydrogenase (second fragment) pseudogene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1443 N840_1444 N840_1444 cybB cybB 1495718 1496248 + cytochrome b561 gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1444 N840_1445 N840_1445 rydC rydC 1496259 1496322 - sRNA antisense regulator of yejABEF%2C Hfq-dependent%3B over-expression causes a thermosensitive growth phenotype on minimal glycerol%2C maltose%2C or ribose media gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1445 N840_1446 N840_1446 ydcA ydcA 1496493 1496666 + ydcA gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1446 N840_1447 N840_1447 hokB hokB 1496738 1496887 - toxic polypeptide%2C small small toxic membrane polypeptide gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1447 N840_1448 N840_1448 mokB mokB 1496778 1496945 - regulatory peptide regulatory peptide whose translation enables hokB expression gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1448 N840_1449 N840_1449 sokB sokB 1496935 1496990 + sRNA antisense regulator blocking mokB%2C and hence hokB%2C translation antisense RNA blocking mokB and hokB translation gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1449 N840_1450 N840_1450 trg trg 1497286 1498926 + methyl-accepting chemotaxis protein III%2C ribose and galactose sensor receptor gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1450 N840_1451 N840_1451 ydcI ydcI 1498964 1499887 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1451 N840_1452 N840_1452 ydcJ ydcJ 1500104 1501447 + putative metalloenzyme gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1452 N840_1453 N840_1453 opgD opgD 1501672 1503327 + osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein putative glycoprotein gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1453 N840_1454 N840_1454 ydcH ydcH 1503467 1503691 + DUF465 family protein%2C function unknown gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1454 N840_1455 N840_1455 rimL rimL 1503754 1504293 + ribosomal-protein-L7/L12-serine acetyltransferase ribosomal-protein-serine acetyltransferase gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1455 N840_1456 N840_1456 ydcK ydcK 1504285 1505265 - putative enzyme gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1456 N840_1457 N840_1457 tehA tehA 1505389 1506381 + potassium-tellurite ethidium and proflavin transporter gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1457 N840_1458 N840_1458 tehB tehB 1506378 1506971 + tellurite%2C selenium methyltransferase%2C SAM-dependent%3B tellurite%2C selenium resistance protein gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1458 N840_1459 N840_1459 ydcL ydcL 1507273 1507941 + lipoprotein gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1459 N840_1460 N840_1460 insP insP 1508034 1508465 - pseudogene%2C IS609 transposase A%3BIS%2C phage%2C Tn%3B Transposon-related functions%3B extrachromosomal%3B transposon related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1460 N840_1461 N840_1461 insQ insQ 1508533 1509681 + IS609 transposase B gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1461 N840_1462 N840_1462 ydcO ydcO 1509721 1510896 - inner membrane protein%2C predicted transporter%2C function unknown putative membrane transport protein gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1462 N840_1463 N840_1463 ydcN ydcN 1510988 1511524 + putative DNA-binding transcriptional regulator gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1463 N840_1464 N840_1464 ydcP ydcP 1511597 1513558 + putative peptidase putative protease gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1464 N840_1465 N840_1465 yncJ yncJ 1513650 1513880 - yncJ gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1465 N840_1466 N840_1466 hicA hicA 1514102 1514278 + mRNA interferase toxin of the HicAB toxin-antitoxin system gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1466 N840_1467 N840_1467 hicB hicB 1514324 1514740 + antitoxin for the HicAB toxin-antitoxin system gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1467 N840_1468 N840_1468 ydcR ydcR 1514819 1516225 + fused predicted DNA-binding transcriptional regulator/predicted amino transferase multi modular%3B putative transcriptional regulator%3B also putative ATP-binding component of a transport system gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1468 N840_1469 N840_1469 ydcS ydcS 1516470 1517615 + polyhydroxybutyrate (PHB) synthase%2C ABC transporter periplasmic binding protein-like protein periplasmic-binding component of ABC superfamily gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1469 N840_1470 N840_1470 ydcT ydcT 1517633 1518646 + putative spermidine/putrescine transporter subunit ATP-binding component of ABC superfamily gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1470 N840_1471 N840_1471 ydcU ydcU 1518647 1519588 + putative spermidine/putrescine transporter subunit membrane component of ABC superfamily gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1471 N840_1472 N840_1472 ydcV ydcV 1519578 1520372 + putative spermidine/putrescine transporter subunit membrane component of ABC superfamily gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1472 N840_1473 N840_1473 patD patD 1520394 1521818 + gamma-aminobutyraldehyde dehydrogenase putative aldehyde dehydrogenase gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1473 N840_1474 N840_1474 yncL yncL 1521915 1522010 - yncL gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1474 N840_1475 N840_1475 ydcX ydcX 1522205 1522378 + conserved protein%2C DUF2566 family gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1475 N840_1476 N840_1476 ydcY ydcY 1522464 1522697 + ydcY gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1476 N840_1477 N840_1477 ydcZ ydcZ 1522698 1523147 - inner membrane protein%2C DUF606 family gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1477 N840_1478 N840_1478 mnaT mnaT 1523144 1523662 - methionine N-acyltransferase%3B L-amino acid N-acyltransferase gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1478 N840_1479 N840_1479 curA curA 1523843 1524880 + curcumin/dihydrocurcumin reductase%2C NADPH-dependent putative oxidoreductase gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1479 N840_1480 N840_1480 mcbR mcbR 1525078 1525743 + colanic acid and biofilm gene transcriptional regulator%2C MqsR-controlled gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1480 N840_1481 N840_1481 yncD yncD 1525779 1527881 - putative iron outer membrane transporter gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1481 N840_1482 N840_1482 yncE yncE 1528123 1529184 + ATP-binding protein%2C periplasmic%2C function unknown putative receptor gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1482 N840_1483 N840_1483 ansP ansP 1529297 1530796 - L-asparagine transporter L-asparagine permease gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1483 N840_1484 N840_1484 yncG yncG 1531063 1531680 + glutathione S-transferase-like protein gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1484 N840_1485 N840_1485 yncH yncH 1531756 1531968 + yncH gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1485 N840_1486 N840_1486 rhsE rhsE 1532718 1534754 + pseudogene%2C rhsE element core protein RhsE%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1486 N840_1487 N840_1487 ydcD ydcD 1534738 1535220 + ydcD gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1487 N840_1488 N840_1488 yncI yncI 1535402 1536455 + pseudogene%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1488 N840_1489 N840_1489 ydcC ydcC 1536632 1537768 + ydcC H repeat-associated protein (ORF-H) gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1489 N840_1490 N840_1490 pptA pptA 1537868 1538101 + 4-oxalocrotonate tautomerase gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1490 N840_1491 N840_1491 yddH yddH 1538098 1538667 - yddH gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1491 N840_1492 N840_1492 nhoA nhoA 1538840 1539685 + N-hydroxyarylamine O-acetyltransferase gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1492 N840_1493 N840_1493 yddE yddE 1539781 1540674 - conserved predicted enzyme%2C PhzC-PhzF family gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1493 N840_1494 N840_1494 narV narV 1540753 1541433 - nitrate reductase 2 (NRZ)%2C gamma subunit gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1494 N840_1495 N840_1495 narW narW 1541430 1542125 - nitrate reductase 2 (NRZ)%2C delta subunit (assembly subunit) gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1495 N840_1496 N840_1496 narY narY 1542125 1543669 - nitrate reductase 2 (NRZ)%2C beta subunit gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1496 N840_1497 N840_1497 narZ narZ 1543666 1547406 - nitrate reductase 2 (NRZ)%2C alpha subunit gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1497 N840_1498 N840_1498 narU narU 1547488 1548876 - nitrate/nitrite transporter nitrite extrusion protein 2 gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1498 N840_1499 N840_1499 yddK yddK 1549200 1550530 - pseudogene%2C leucine-rich protein%3B putative glycoportein pseudogene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1499 N840_1500 N840_1500 yddL yddL 1550566 1550844 - predicted lipoprotein%3Bputative membrane%3B Not classified%3B putative outer membrane porin protein%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1500 N840_1501 N840_1501 yddG yddG 1551104 1551985 - aromatic amino acid exporter gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1501 N840_1502 N840_1502 fdnG fdnG 1552217 1555264 + formate dehydrogenase-N%2C nitrate-inducible%2C alpha subunit%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1502 N840_1503 N840_1503 fdnH fdnH 1555277 1556161 + formate dehydrogenase-N%2C Fe-S (beta) subunit%2C nitrate-inducible formate dehydrogenase-N%2C nitrate-inducible%2C iron-sulfur beta subunit gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1503 N840_1504 N840_1504 fdnI fdnI 1556154 1556807 + formate dehydrogenase-N%2C cytochrome B556 (gamma) subunit%2C nitrate-inducible formate dehydrogenase-N%2C nitrate-inducible%2C cytochrome B556(Fdn) gamma subunit gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1504 N840_1505 N840_1505 yddM yddM 1557214 1557498 - putative DNA-binding transcriptional regulator gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1505 N840_1506 N840_1506 adhP adhP 1557644 1558654 - ethanol-active dehydrogenase/acetaldehyde-active reductase alcohol dehydrogenase gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1506 N840_1507 N840_1507 maeA maeA 1558788 1560485 - malate dehydrogenase%2C (decarboxylating%2C NAD-requiring) (malic enzyme) NAD-linked malate dehydrogenase (malic enzyme) gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1507 N840_1508 N840_1508 sra sra 1560642 1560779 - stationary-phase-induced ribosome-associated protein stationary phase-induced ribosome-associated protein gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1508 N840_1509 N840_1509 bdm bdm 1560881 1561096 - biofilm-dependent modulation protein gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1509 N840_1510 N840_1510 osmC osmC 1561441 1561872 + lipoyl-dependent Cys-based peroxidase%2C hydroperoxide resistance%3B salt-shock inducible membrane protein%3B peroxiredoxin osmotically inducible protein gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1510 N840_1511 N840_1511 ddpF ddpF 1561928 1562854 - D%2CD-dipeptide permease system%2C ATP-binding component ATP-binding component of ABC superfamily gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1511 N840_1512 N840_1512 ddpD ddpD 1562847 1563833 - D%2CD-dipeptide permease system%2C ATP-binding component ATP-binding component of ABC superfamily gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1512 N840_1513 N840_1513 ddpC ddpC 1563830 1564726 - D-ala-D-ala transporter subunit membrane component of ABC superfamily gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1513 N840_1514 N840_1514 ddpB ddpB 1564723 1565745 - D-ala-D-ala transporter subunit membrane component of ABC superfamily gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1514 N840_1515 N840_1515 ddpA ddpA 1565747 1567297 - D-ala-D-a la transporter subunit periplasmic-binding component of ABC superfamily gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1515 N840_1516 N840_1516 ddpX ddpX 1567311 1567892 - D-ala-D-ala dipeptidase%2C Zn-dependent gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1516 N840_1517 N840_1517 dosP dosP 1568150 1570549 - oxygen sensor%2C c-di-GMP phosphodiesterase%2C heme-regulated%3B cold- and stationary phase-induced bioflim regulator gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1517 N840_1518 N840_1518 dosC dosC 1570574 1571956 - diguanylate cyclase%2C cold- and stationary phase-induced oxygen-dependent biofilm regulator gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1518 N840_1519 N840_1519 yddW yddW 1572320 1573639 - liprotein%2C glycosyl hydrolase-like protein gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1519 N840_1520 N840_1520 gadC gadC 1573770 1575305 - glutamate:gamma-aminobutyric acid antiporter acid sensitivity protein%2C putative transporter gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1520 N840_1521 N840_1521 gadB gadB 1575461 1576861 - glutamate decarboxylase B%2C PLP-dependent glutamate decarboxylase isozyme gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1521 N840_1522 N840_1522 pqqL pqqL 1577223 1580018 - putative peptidase putative zinc protease gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1522 N840_1523 N840_1523 yddB yddB 1580063 1582435 - putative porin protein gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1523 N840_1524 N840_1524 yddA yddA 1582473 1584158 - fused predicted multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1524 N840_1525 N840_1525 ydeM ydeM 1584449 1585606 - ydeM putative enzyme gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1525 N840_1526 N840_1526 ydeN ydeN 1585658 1587340 - ydeN putative sulfatase gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1526 N840_1527 N840_1527 ydeO ydeO 1587742 1588503 - UV-inducible global regulator%2C EvgA-%2C GadE-dependent putative ARAC-type regulatory protein gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1527 N840_1528 N840_1528 safA safA 1588578 1588775 - two-component system connector membrane protein%2C EvgSA to PhoQP gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1528 N840_1529 N840_1529 ydeP ydeP 1589023 1591302 - putative oxidoreductase putative oxidoreductase%2C major subunit gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1529 N840_1530 N840_1530 ydeQ ydeQ 1591636 1592550 - putative fimbrial-like adhesin protein putative adhesin%3B similar to FimH protein gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1530 N840_1531 N840_1531 ydeR ydeR 1592609 1593112 - putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1531 N840_1532 N840_1532 ydeS ydeS 1593125 1593655 - putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1532 N840_1533 N840_1533 ydeT ydeT 1593669 1594895 - pseudogene%3B putative outer membrane protein%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1533 N840_1534 N840_1534 yneL yneL 1595150 1595352 - pseudogene%2C AraC family pseudogene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1534 N840_1535 N840_1535 hipA hipA 1595670 1596992 - EF-Tu kinase%3B serine protein kinase required for persister formation%3B toxin of HipAB TA pair persistence to inhibition of murein or DNA biosynthesis%2C DNA-binding regulator gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1535 N840_1536 N840_1536 hipB hipB 1596992 1597258 - antitoxin of HipAB toxin-antitoxin system persistence to inhibition of murein or DNA biosynthesis%3B regulatory protein gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1536 N840_1537 N840_1537 yneO yneO 1597481 1602803 - pseudogene%2C AidA homolog%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1537 N840_1538 N840_1538 lsrK lsrK 1603433 1605025 - autoinducer-2 (AI-2) kinase gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1538 N840_1539 N840_1539 lsrR lsrR 1605104 1606057 - lsr operon transcriptional repressor gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1539 N840_1540 N840_1540 lsrA lsrA 1606306 1607841 + autoinducer 2 import ATP-binding protein autoinducer-2 (AI-2)-transporting ATPase gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1540 N840_1541 N840_1541 lsrC lsrC 1607835 1608863 + autoinducer 2 import system permease protein autoinducer-2 (AI-2)-transporting membrane channel protein%3B membrane component of ABC superfamily gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1541 N840_1542 N840_1542 lsrD lsrD 1608863 1609855 + autoinducer 2 import system permease protein autoinducer-2 (AI-2)-transporting membrane channel protein%3B membrane component of ABC superfamily gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1542 N840_1543 N840_1543 lsrB lsrB 1609867 1610889 + autoinducer 2-binding protein periplasmic autoinducer-2 (AI-2) binding protein%3B periplasmic-binding component of ABC superfamily gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1543 N840_1544 N840_1544 lsrF lsrF 1610916 1611791 + putative autoinducer-2 (AI-2) aldolase gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1544 N840_1545 N840_1545 lsrG lsrG 1611815 1612105 + autoinducer-2 (AI-2) degrading protein LsrG gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1545 N840_1546 N840_1546 tam tam 1612162 1612920 + trans-aconitate methyltransferase trans-aconitate 2-methyltransferase gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1546 N840_1547 N840_1547 yneE yneE 1612924 1613838 - putative inner membrane protein%2C bestrophin family gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1547 N840_1548 N840_1548 uxaB uxaB 1614045 1615496 - altronate oxidoreductase%2C NAD-dependent altronate oxidoreductase gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1548 N840_1549 N840_1549 yneF yneF 1615723 1616670 - putative membrane-bound diguanylate cyclase gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1549 N840_1550 N840_1550 yneG yneG 1616782 1617141 - yneG gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1550 N840_1551 N840_1551 glsB glsB 1617141 1618067 - glutaminase 2 putative glutaminase gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1551 N840_1552 N840_1552 sad sad 1618131 1619519 - succinate semialdehyde dehydrogenase%2C NAD(P)+-dependent putative aldehyde dehydrogenase gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1552 N840_1553 N840_1553 yneJ yneJ 1619620 1620501 + putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1553 N840_1554 N840_1554 yneK yneK 1620579 1621694 + yneK gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1554 N840_1555 N840_1555 ydeA ydeA 1621844 1623034 + arabinose efflux transporter%2C arabinose-inducible L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein (MFS family) gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1555 N840_1556 N840_1556 marC marC 1623059 1623724 - inner membrane protein%2C UPF0056 family gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1556 N840_1557 N840_1557 marR marR 1623936 1624370 + DNA-binding transcriptional repressor of multiple antibiotic resistance multiple antibiotic resistance protein%3B repressor of mar operon gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1557 N840_1558 N840_1558 marA marA 1624390 1624773 + DNA-binding transcriptional dual activator of multiple antibiotic resistance multiple antibiotic resistance%3B transcriptional activator of defense systems gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1558 N840_1559 N840_1559 marB marB 1624805 1625023 + marB multiple antibiotic resistance protein gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1559 N840_1560 N840_1560 eamA eamA 1625054 1625953 - cysteine and O-acetyl-L-serine efflux system amino acid metabolite efflux pump gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1560 N840_1561 N840_1561 ydeE ydeE 1626148 1627335 + putative transporter putative transport protein gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1561 N840_1562 N840_1562 yneM yneM 1627462 1627557 + expressed protein%2C membrane-associated gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1562 N840_1563 N840_1563 mgrR mgrR 1627633 1627730 - sRNA antisense regulator down regulates YgdQ and EptB%2C PhoPQ-regulated%2C Hfq-dependent%3B affects sensitivity to antimicrobial peptides gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1563 N840_1564 N840_1564 ydeH ydeH 1627776 1628666 - diguanylate cyclase%2C required for pgaD induction gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1564 N840_1565 N840_1565 ydeI ydeI 1628921 1629312 - Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1565 N840_1566 N840_1566 ydeJ ydeJ 1629588 1630106 + ydeJ gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1566 N840_1567 N840_1567 dcp dcp 1630150 1632195 - dipeptidyl carboxypeptidase II gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1567 N840_1568 N840_1568 ydfG ydfG 1632332 1633078 + malonic semialdehyde reductase%2C NADPH-dependent%3B L-allo-threonine dehydrogenase%2C NAD(P)-dependent%3B also oxidizes L-serine%2C D-serine%2C D-threonine and 3-hydroxyisobutyrate putative oxidoreductase gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1568 N840_1569 N840_1569 ydfH ydfH 1633167 1633853 + putative DNA-binding transcriptional regulator gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1569 N840_1570 N840_1570 ydfZ ydfZ 1634030 1634233 + selenoprotein%2C function unknown gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1570 N840_1571 N840_1571 ydfI ydfI 1634268 1635728 - putative D-mannonate oxidoreductase%2C NAD-dependent putative oxidoreductase gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1571 N840_1572 N840_1572 ydfJ ydfJ 1635817 1657653 - pseudogene%2C MFS transporter family%3B interrupted by Qin prophage%3BPhage or Prophage Related%3B putative transport protein pseudogene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1572 N840_1573 N840_1573 ydfK ydfK 1637887 1638120 + cold shock protein%2C function unknown%2C Qin prophage gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1573 N840_1574 N840_1574 pinQ pinQ 1638437 1639027 + Qin prophage%3B predicted site-specific recombinase gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1574 N840_1575 N840_1575 tfaQ tfaQ 1639125 1639700 - Qin prophage%3B predicted tail fiber assembly protein tail fiber assembly protein homolog from lambdoid prophage Qin gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1575 N840_1576 N840_1576 stfQ stfQ 1639700 1640662 - Qin prophage%3B predicted side tail fiber assembly protein gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1576 N840_1577 N840_1577 nohQ nohQ 1640655 1641182 - pseudogene%2C Qin prophage%3B predicted packaging protein%3BPhage or Prophage Related%3B DNA packaging protein NU1 homolog from lambdoid prophage Qin%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1577 N840_1578 N840_1578 ynfO ynfO 1641571 1641804 + ynfO Qin prophage gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1578 N840_1579 N840_1579 ydfO ydfO 1641862 1642272 + Qin prophage%3B putative protein gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1579 N840_1580 N840_1580 gnsB gnsB 1642424 1642597 - Qin prophage%3B multicopy suppressor of secG(Cs) and fabA6(Ts) gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1580 N840_1581 N840_1581 ynfN ynfN 1642769 1642924 - Qin prophage%3B cold shock-induced protein gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1581 N840_1582 N840_1582 cspI cspI 1643270 1643482 - Qin prophage%3B cold shock protein cold shock-like protein gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1582 N840_1583 N840_1583 rzpQ rzpQ 1643845 1644342 - Rz-like protein%2C Qin prophage gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1583 N840_1584 N840_1584 rzoQ rzoQ 1643895 1644149 - putative Rz1-like lipoprotein%2C Qin prophage gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1584 N840_1585 N840_1585 rrrQ rrrQ 1644339 1644872 - Qin prophage%3B predicted lysozyme gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1585 N840_1586 N840_1586 ydfR ydfR 1644869 1645180 - Qin prophage%3B putative protein gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1586 N840_1587 N840_1587 essQ essQ 1645185 1645400 - Qin prophage%3B predicted S lysis protein gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1587 N840_1588 N840_1588 cspB cspB 1646154 1646369 - Qin prophage%3B cold shock protein gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1588 N840_1589 N840_1589 cspF cspF 1646670 1646882 + Qin prophage%3B cold shock protein gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1589 N840_1590 N840_1590 quuQ quuQ 1647304 1648056 - Qin prophage%3B predicted antitermination protein Q gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1590 N840_1591 N840_1591 ydfU ydfU 1648070 1649119 - Qin prophage%3B putative protein gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1591 N840_1592 N840_1592 rem rem 1649466 1649717 - Qin prophage%3B putative protein gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1592 N840_1593 N840_1593 hokD hokD 1649934 1650089 - Qin prophage%3B small toxic polypeptide polypeptide destructive to membrane potential%3B hokD (relF) regulatory elements are deleted%2C and the gene is fused to the relBE transcript%3B evolutionary relic? gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1593 N840_1594 N840_1594 relE relE 1650161 1650448 - Qin prophage%3B toxin of the RelE-RelB toxin-antitoxin system gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1594 N840_1595 N840_1595 relB relB 1650448 1650687 - Qin prophage%3B bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/ transcriptional repressor negative regulator of translation gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1595 N840_1596 N840_1596 ydfV ydfV 1650712 1651017 + Qin prophage%3B putative protein gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1596 N840_1597 N840_1597 flxA flxA 1651220 1651552 + Qin prophage%3B putative protein gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1597 N840_1598 N840_1598 intK intK 1651989 1652171 - pseudogene%2C integrase fragment%2C Qin prophage%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1598 N840_1599 N840_1599 ydfX ydfX 1652173 1652451 - pseudogene%2C Qin prophage%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1599 N840_1600 N840_1600 dicC dicC 1652435 1652665 - Qin prophage%3B DNA-binding transcriptional regulator for DicB regulator of dicB gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1600 N840_1601 N840_1601 dicA dicA 1652749 1653156 + Qin prophage%3B predicted regulator for DicB regulator of dicB gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1601 N840_1602 N840_1602 ydfA ydfA 1653323 1653478 + Qin prophage%3B putative protein gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1602 N840_1603 N840_1603 ydfB ydfB 1653480 1653608 + Qin prophage%3B putative protein gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1603 N840_1604 N840_1604 ydfC ydfC 1653638 1653856 + conserved protein%2C Qin prophage gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1604 N840_1605 N840_1605 dicF dicF 1654197 1654249 + sRNA antisense regulator%2C inhibits ftsZ%2C Hfq-dependent%3B Qin prophage DicF antisense RNA%2C inhibits ftsZ translation gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1605 N840_1606 N840_1606 dicB dicB 1654424 1654612 + Qin prophage%3B cell division inhibition protein inhibition of cell division gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1606 N840_1607 N840_1607 ydfD ydfD 1654609 1654800 + Qin prophage%3B putative protein gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1607 N840_1608 N840_1608 ydfE ydfE 1654893 1655657 + Qin prophage%3B pseudogene%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1608 N840_1609 N840_1609 insD1 insD1 1655660 1656352 + IS2 transposase TnpB%3BIS%2C phage%2C Tn%3B Transposon-related functions%3B extrachromosomal%3B transposon related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1609 N840_1610 N840_1610 intQ intQ 1656366 1657523 + pseudogene%2C Qin prophage%3B predicted defective integrase%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1610 N840_1611 N840_1611 rspB rspB 1657711 1658730 - putative oxidoreductase%2C Zn-dependent and NAD(P)-binding protein starvation sensing protein gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1611 N840_1612 N840_1612 rspA rspA 1658742 1659956 - bifunctional D-altronate/D-mannonate dehydratase starvation sensing protein gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1612 N840_1613 N840_1613 ynfA ynfA 1660162 1660488 - inner membrane protein%2C UPF0060 family gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1613 N840_1614 N840_1614 ynfB ynfB 1660623 1660964 + ynfB gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1614 N840_1615 N840_1615 speG speG 1660999 1661559 + spermidine N1-acetyltransferase gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1615 N840_1616 N840_1616 ynfC ynfC 1661562 1662272 - lipoprotein%2C UPF0257 family gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1616 N840_1617 N840_1617 ynfD ynfD 1662380 1662685 + ynfD gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1617 N840_1618 N840_1618 ynfE ynfE 1662884 1665310 + putative selenate reductase%2C periplasmic gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1618 N840_1619 N840_1619 ynfF ynfF 1665371 1667794 + S- and N-oxide reductase%2C A subunit%2C periplasmic gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1619 N840_1620 N840_1620 ynfG ynfG 1667805 1668422 + oxidoreductase%2C Fe-S subunit gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1620 N840_1621 N840_1621 ynfH ynfH 1668424 1669278 + oxidoreductase%2C membrane subunit gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1621 N840_1622 N840_1622 dmsD dmsD 1669321 1669935 + twin-argninine leader-binding protein for DmsA and TorA gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1622 N840_1623 N840_1623 clcB clcB 1670130 1671386 + H(+)/Cl(-) exchange transporter gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1623 N840_1624 N840_1624 ynfK ynfK 1671339 1672034 - putative dethiobiotin synthetase gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1624 N840_1625 N840_1625 mlc mlc 1672159 1673379 - global DNA-binding transcriptional repressor%3B autorepressor%3B required for anaerobic growth on glucosamine putative NAGC-like transcriptional regulator gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1625 N840_1626 N840_1626 ynfL ynfL 1673514 1674407 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1626 N840_1627 N840_1627 ynfM ynfM 1674514 1675767 + putative arabinose efflux transporter putative transport protein gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1627 N840_1628 N840_1628 asr asr 1676191 1676499 + acid shock-inducible periplasmic protein acid shock protein gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1628 N840_1629 N840_1629 ydgU ydgU 1676592 1676675 + ydgU gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1629 N840_1630 N840_1630 ydgD ydgD 1676775 1677596 + putative peptidase gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1630 N840_1631 N840_1631 mdtI mdtI 1677635 1677964 - multidrug efflux system transporter possible chaperone gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1631 N840_1632 N840_1632 mdtJ mdtJ 1677951 1678316 - multidrug efflux system transporter possible chaperone gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1632 N840_1633 N840_1633 tqsA tqsA 1678728 1679762 + pheromone AI-2 transporter putative transport protein gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1633 N840_1634 N840_1634 pntB pntB 1679787 1681175 - pyridine nucleotide transhydrogenase%2C beta subunit gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1634 N840_1635 N840_1635 pntA pntA 1681186 1682718 - pyridine nucleotide transhydrogenase%2C alpha subunit gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1635 N840_1636 N840_1636 ydgH ydgH 1683242 1684186 + ydgH gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1636 N840_1637 N840_1637 ydgI ydgI 1684372 1685754 + putative arginine/ornithine antiporter transporter putative arginine/ornithine antiporter gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1637 N840_1638 N840_1638 folM folM 1685791 1686513 + dihydromonapterin reductase%2C NADPH-dependent%3B dihydrofolate reductase isozyme putative oxidoreductase gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1638 N840_1639 N840_1639 ydgC ydgC 1686510 1686845 - inner membrane protein%2C GlpM family gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1639 N840_1640 N840_1640 rstA rstA 1686974 1687693 + response transcriptional regulatory protein (RstB sensor) multicopy supressor of yjeE%2C yeaZ or ygjD deletion lethality%2C predicted response regulator of two-component regulatory system with sensor protein RstB gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1640 N840_1641 N840_1641 rstB rstB 1687697 1688998 + sensory histidine kinase in two-component regulatory system with RstA sensor histidine protein kinase (RstA regulator) gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1641 N840_1642 N840_1642 tus tus 1689074 1690003 + inhibitor of replication at Ter%2C DNA-binding protein DNA-binding protein%3B inhibition of replication at Ter sites gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1642 N840_1643 N840_1643 fumC fumC 1690000 1691402 - fumarase C%3D fumarate hydratase Class II%3B isozyme%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1643 N840_1644 N840_1644 fumA fumA 1691545 1693191 - fumarate hydratase (fumarase A)%2C aerobic Class I fumarase A %3D fumarate hydratase Class I%3B aerobic isozyme gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1644 N840_1645 N840_1645 manA manA 1693390 1694565 + mannose-6-phosphate isomerase gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1645 N840_1646 N840_1646 ydgA ydgA 1694666 1696174 + conserved protein%2C DUF945 family gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1646 N840_1647 N840_1647 uidC uidC 1696400 1697665 - putative outer membrane porin protein membrane-associated protein gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1647 N840_1648 N840_1648 uidB uidB 1697704 1699077 - glucuronide transporter glucuronide permease gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1648 N840_1649 N840_1649 uidA uidA 1699074 1700885 - beta-D-glucuronidase gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1649 N840_1650 N840_1650 uidR uidR 1701275 1701865 - DNA-binding transcriptional repressor repressor for uid operon gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1650 N840_1651 N840_1651 hdhA hdhA 1702086 1702853 - 7-alpha-hydroxysteroid dehydrogenase%2C NAD-dependent NAD-dependent 7alpha-hydroxysteroid dehydrogenase%2C dehydroxylation of bile acids gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1651 N840_1652 N840_1652 malI malI 1702965 1703993 - transcriptional repressor of Mal regulon maltose regulon regulatory protein gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1652 N840_1653 N840_1653 malX malX 1704168 1705761 + PTS system%2C maltose and glucose-specific IIABC component%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1653 N840_1654 N840_1654 malY malY 1705771 1706943 + bifunctional beta-cystathionase%2C PLP-dependent/ regulator of maltose regulon cystathionine beta-lyase%3B maltose regulon modulator gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1654 N840_1655 N840_1655 add add 1707047 1708048 + adenosine deaminase gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1655 N840_1656 N840_1656 ydgJ ydgJ 1708082 1709122 - putative oxidoreductase gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1656 N840_1657 N840_1657 blr blr 1709365 1709490 + beta-lactam resistance membrane protein%3B divisome-associated protein beta-lactam resistance protein gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1657 N840_1658 N840_1658 cnu cnu 1709763 1709978 + oriC-binding complex H-NS/Cnu%3B binds 26 bp cnb site%3B also forms a complex with StpA gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1658 N840_1659 N840_1659 ydgK ydgK 1710064 1710504 + inner membrane protein%2C DUF2569 family gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1659 N840_1660 N840_1660 rsxA rsxA 1710581 1711162 + electron transport complex protein required for the reduction of SoxR gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1660 N840_1661 N840_1661 rsxB rsxB 1711162 1711740 + electron transport complex protein%2C iron-sulfur protein%2C required for the reduction of SoxR gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1661 N840_1662 N840_1662 rsxC rsxC 1711733 1713955 + electron transport complex protein required for the reduction of SoxR%3B predicted membrane-associated NADH oxidoreductase gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1662 N840_1663 N840_1663 rsxD rsxD 1713956 1715014 + electron transport complex protein required for the reduction of SoxR%3B predicted membrane protein electron transport complex protein gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1663 N840_1664 N840_1664 rsxG rsxG 1715018 1715638 + electron transport complex protein required for the reduction of SoxR gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1664 N840_1665 N840_1665 rsxE rsxE 1715642 1716337 + electron transport complex inner membrane NADH-quinone reductase required for the reduction of SoxR electron transport complex protein gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1665 N840_1666 N840_1666 nth nth 1716337 1716972 + DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) endonuclease III%3B specific for apurinic and/or apyrimidinic sites gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1666 N840_1667 N840_1667 dtpA dtpA 1717584 1719086 + dipeptide and tripeptide permease A putative transport protein gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1667 N840_1668 N840_1668 gstA gstA 1719192 1719797 + glutathionine S-transferase gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1668 N840_1669 N840_1669 pdxY pdxY 1719841 1720704 - pyridoxamine kinase pyridoxal kinase 2 / pyridoxine kinase gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1669 N840_1670 N840_1670 tyrS tyrS 1720763 1722037 - tyrosyl-tRNA synthetase tyrosine tRNA synthetase gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1670 N840_1671 N840_1671 pdxH pdxH 1722166 1722822 - pyridoxine 5'-phosphate oxidase pyridoxinephosphate oxidase gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1671 N840_1672 N840_1672 mliC mliC 1722881 1723210 - inhibitor of c-type lysozyme%2C membrane-bound%3B predicted lipoprotein gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1672 N840_1673 N840_1673 anmK anmK 1723308 1724417 - anhydro-N-acetylmuramic acid kinase gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1673 N840_1674 N840_1674 slyB slyB 1724691 1725158 + outer membrane lipoprotein putative outer membrane protein gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1674 N840_1675 N840_1675 slyA slyA 1725205 1725639 - DNA-binding transcriptional activator transcriptional regulator for cryptic hemolysin gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1675 N840_1676 N840_1676 ydhI ydhI 1725840 1726076 + putative inner membrane protein gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1676 N840_1677 N840_1677 ydhJ ydhJ 1726079 1726936 + putative membrane fusion protein (MFP) of YdhJK efflux pump putative membrane protein gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1677 N840_1678 N840_1678 ydhK ydhK 1726936 1728948 + putative efflux protein (PET) component of YdhJK efflux pump gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1678 N840_1679 N840_1679 sodC sodC 1728949 1729470 - superoxide dismutase%2C Cu%2C Zn%2C periplasmic superoxide dismutase precursor (Cu-Zn) gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1679 N840_1680 N840_1680 ydhF ydhF 1729551 1730447 - putative oxidoreductase gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1680 N840_1681 N840_1681 ydhL ydhL 1730496 1730735 - ydhL gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1681 N840_1682 N840_1682 nemR nemR 1730838 1731437 + transcriptional repressor for the nem operon%2C NEM-inactivated gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1682 N840_1683 N840_1683 nemA nemA 1731474 1732571 + N-ethylmaleimide reductase%2C FMN-linked N-ethylmaleimide reductase gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1683 N840_1684 N840_1684 gloA gloA 1732652 1733059 + glyoxalase I%2C Ni-dependent lactoylglutathione lyase gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1684 N840_1685 N840_1685 rnt rnt 1733162 1733809 + ribonuclease T (RNase T) RNase T%2C degrades tRNA gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1685 N840_1686 N840_1686 lhr lhr 1733902 1738518 + putative ATP-dependent helicase member of ATP-dependent helicase superfamily II gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1686 N840_1687 N840_1687 grxD grxD 1738569 1738916 - glutaredoxin-4 gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1687 N840_1688 N840_1688 ydhO ydhO 1739250 1740065 + putative peptidase%2C C40 clan putative lipoprotein gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1688 N840_1689 N840_1689 sodB sodB 1740193 1740774 + superoxide dismutase%2C Fe superoxide dismutase%2C iron gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1689 N840_1690 N840_1690 ydhP ydhP 1740936 1742105 - putative transporter putative transport protein gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1690 N840_1691 N840_1691 ynhF ynhF 1742271 1742360 - ynhF gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1691 N840_1692 N840_1692 purR purR 1742659 1743684 + DNA-binding transcriptional repressor%2C hypoxanthine-binding protein transcriptional repressor for pur regulon%2C glyA%2C glnB%2C prsA%2C speA gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1692 N840_1693 N840_1693 ydhB ydhB 1743681 1744613 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1693 N840_1694 N840_1694 ydhC ydhC 1744726 1745937 + putative arabinose efflux transporter putative transport protein gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1694 N840_1695 N840_1695 cfa cfa 1746228 1747376 + cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) cyclopropane fatty acyl phospholipid synthase gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1695 N840_1696 N840_1696 ribC ribC 1747416 1748057 - riboflavin synthase%2C alpha subunit riboflavin synthase%2C alpha chain gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1696 N840_1697 N840_1697 mdtK mdtK 1748272 1749645 + multidrug efflux system transporter multidrug resistance protein norM (Na(+)/drug antiporter) (Multidrug-efflux transporter) gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1697 N840_1698 N840_1698 ydhQ ydhQ 1749686 1750942 - ydhQ possible enzyme gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1698 N840_1699 N840_1699 valV valV 1751250 1751326 + tRNA-Val anticodon: GAC tRNA gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1699 N840_1700 N840_1700 valW valW 1751331 1751407 + tRNA-Val anticodon: GAC tRNA gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1700 N840_1701 N840_1701 ydhR ydhR 1751515 1751820 + putative monooxygenase gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1701 N840_1702 N840_1702 ydhS ydhS 1751946 1753550 + conserved protein with FAD/NAD(P)-binding domain gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1702 N840_1703 N840_1703 ydhT ydhT 1753562 1754374 - ydhT gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1703 N840_1704 N840_1704 ydhU ydhU 1754378 1755163 - putative cytochrome gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1704 N840_1705 N840_1705 ydhX ydhX 1755160 1755828 - putative 4Fe-4S ferridoxin-type protein putative oxidoreductase%2C Fe-S subunit gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1705 N840_1706 N840_1706 ydhW ydhW 1755892 1756539 - ydhW gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1706 N840_1707 N840_1707 ydhV ydhV 1756543 1758645 - putative oxidoreductase gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1707 N840_1708 N840_1708 ydhY ydhY 1758666 1759292 - putative 4Fe-4S ferridoxin-type protein putative oxidoreductase%2C Fe-S subunit gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1708 N840_1709 N840_1709 ydhZ ydhZ 1759747 1759956 - ydhZ gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1709 N840_1710 N840_1710 pykF pykF 1760513 1761925 + pyruvate kinase I pyruvate kinase I (formerly F)%2C fructose stimulated gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1710 N840_1711 N840_1711 lpp lpp 1762236 1762472 + murein lipoprotein gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1711 N840_1712 N840_1712 ynhG ynhG 1762536 1763535 - Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1712 N840_1713 N840_1713 sufE sufE 1763684 1764100 - sulfur acceptor protein gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1713 N840_1714 N840_1714 sufS sufS 1764113 1765334 - Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1714 N840_1715 N840_1715 sufD sufD 1765331 1766602 - component of SufBCD Fe-S cluster assembly scaffold protein gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1715 N840_1716 N840_1716 sufC sufC 1766577 1767323 - SufBCD Fe-S cluster assembly scaffold protein%2C ATP-binding protein putative ATP-binding component of a transport system gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1716 N840_1717 N840_1717 sufB sufB 1767333 1768819 - Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1717 N840_1718 N840_1718 sufA sufA 1768828 1769196 - Fe-S cluster assembly protein gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1718 N840_1719 N840_1719 rydB rydB 1769523 1769590 - novel sRNA%2C function unknown identified in a large scale screen ncRNA gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1719 N840_1720 N840_1720 ydiH ydiH 1769744 1769932 - ydiH gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1720 N840_1721 N840_1721 ydiI ydiI 1770032 1770442 - acyl-CoA esterase gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1721 N840_1722 N840_1722 ydiJ ydiJ 1770439 1773495 - putative FAD-linked oxidoreductase putative oxidase gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1722 N840_1723 N840_1723 ydiK ydiK 1773884 1774996 + inner membrane protein%2C UPF0118 family gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1723 N840_1724 N840_1724 rprA rprA 1775182 1775287 + sRNA antisense activator for RpoS translation%2C Hfq-dependent RprA RNA%3B positive regulatory RNA for rpoS translation gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1724 N840_1725 N840_1725 ydiL ydiL 1775425 1775781 + ydiL gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1725 N840_1726 N840_1726 ydiM ydiM 1775881 1777095 + inner membrane protein%2C predicted transporter putative transport system permease protein gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1726 N840_1727 N840_1727 ydiN ydiN 1777322 1778587 + inner membrane protein%2C predicted MFS superfamily transporter putative amino acid/amine transport protein gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1727 N840_1728 N840_1728 ydiB ydiB 1778599 1779465 + quinate/shikimate 5-dehydrogenase%2C NAD(P)-binding protein putative oxidoreductase gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1728 N840_1729 N840_1729 aroD aroD 1779496 1780254 + 3-dehydroquinate dehydratase gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1729 N840_1730 N840_1730 ydiF ydiF 1780397 1781992 + fused predicted acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit putative enzyme gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1730 N840_1731 N840_1731 ydiO ydiO 1782006 1783157 + putative acyl-CoA dehydrogenase putative oxidoreductase gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1731 N840_1732 N840_1732 ydiP ydiP 1783200 1784111 - putative DNA-binding transcriptional regulator putative ARAC-type regulatory protein gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1732 N840_1733 N840_1733 ydiQ ydiQ 1784427 1785191 + putative electron transfer flavoprotein subunit putative transport protein gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1733 N840_1734 N840_1734 ydiR ydiR 1785211 1786149 + putative electron transfer flavoprotein%2C FAD-binding subunit putative flavoprotein gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1734 N840_1735 N840_1735 ydiS ydiS 1786205 1787494 + putative oxidoreductase with FAD/NAD(P)-binding domain flavoprotein%3B probably electron transport gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1735 N840_1736 N840_1736 ydiT ydiT 1787491 1787784 + putative 3Fe-4S ferredoxin-type protein gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1736 N840_1737 N840_1737 fadK fadK 1787841 1789487 + short chain acyl-CoA synthetase%2C anaerobic putative ligase/synthetase gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1737 N840_1738 N840_1738 ppsA ppsA 1789544 1791922 - phosphoenolpyruvate synthase gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1738 N840_1739 N840_1739 ppsR ppsR 1792255 1793088 + bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1739 N840_1740 N840_1740 aroH aroH 1793245 1794291 + 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase%2C tryptophan repressible 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase%2C tryptophan repressible) gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1740 N840_1741 N840_1741 ydiE ydiE 1794423 1794614 + hemin uptake protein HemP-like protein gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1741 N840_1742 N840_1742 ydiU ydiU 1794618 1796054 - conserved protein%2C UPF0061 family gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1742 N840_1743 N840_1743 ydiV ydiV 1796117 1796830 - anti-FlhD4C2 factor%2C inactive EAL family phosphodiesterase gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1743 N840_1744 N840_1744 nlpC nlpC 1797077 1797541 - putative peptidase%2C C40 clan%2C lipoprotein lipoprotein gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1744 N840_1745 N840_1745 btuD btuD 1797619 1798368 - vitamin B12 transporter subunit : ATP-binding component of ABC superfamily ATP-binding component of vitamin B12 transport system gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1745 N840_1746 N840_1746 btuE btuE 1798368 1798919 - glutathione peroxidase vitamin B12 transport gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1746 N840_1747 N840_1747 btuC btuC 1798982 1799962 - vitamin B12 transporter subunit: membrane component of ABC superfamily vitamin B12 transport permease protein gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1747 N840_1748 N840_1748 ihfA ihfA 1800063 1800362 - integration host factor (IHF)%2C DNA-binding protein%2C alpha subunit integration host factor (IHF)%2C alpha subunit%3B site specific recombination gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1748 N840_1749 N840_1749 pheT pheT 1800367 1802754 - phenylalanine tRNA synthetase%2C beta subunit phenylalanine tRNA synthetase%2C beta-subunit gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1749 N840_1750 N840_1750 pheS pheS 1802769 1803752 - phenylalanine tRNA synthetase%2C alpha subunit phenylalanine tRNA synthetase%2C alpha-subunit gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1750 N840_1751 N840_1751 pheM pheM 1804036 1804080 - phenylalanyl-tRNA synthetase operon leader peptide phenylalanyl-tRNA synthetase (pheST) operon leader peptide gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1751 N840_1752 N840_1752 rplT rplT 1804203 1804559 - 50S ribosomal subunit protein L20 50S ribosomal subunit protein L20%2C and regulator gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1752 N840_1753 N840_1753 rpmI rpmI 1804612 1804809 - 50S ribosomal subunit protein L35 50S ribosomal subunit protein A gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1753 N840_1754 N840_1754 infC infC 1804906 1805448 - protein chain initiation factor IF-3 gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1754 N840_1755 N840_1755 thrS thrS 1805452 1807380 - threonyl-tRNA synthetase threonine tRNA synthetase gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1755 N840_1756 N840_1756 arpB arpB 1807904 1809803 + pseudogene%2C ankyrin repeats pseudogene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1756 N840_1757 N840_1757 yniD yniD 1809975 1810082 + yniD gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1757 N840_1758 N840_1758 ydiY ydiY 1810135 1810893 - putative outer membrane protein%2C acid-inducible gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1758 N840_1759 N840_1759 pfkB pfkB 1811180 1812109 + 6-phosphofructokinase II 6-phosphofructokinase II%3B suppressor of pfkA gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1759 N840_1760 N840_1760 ydiZ ydiZ 1812210 1812500 + ydiZ gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1760 N840_1761 N840_1761 yniA yniA 1812606 1813466 + putative phosphotransferase/kinase gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1761 N840_1762 N840_1762 yniB yniB 1813507 1814043 - putative inner membrane protein gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1762 N840_1763 N840_1763 yniC yniC 1814190 1814858 + 2-deoxyglucose-6-P phosphatase putative phosphatase gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1763 N840_1764 N840_1764 ydjM ydjM 1815021 1815611 + inner membrane protein regulated by LexA gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1764 N840_1765 N840_1765 ydjN ydjN 1815744 1817135 + putative transporter gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1765 N840_1766 N840_1766 ydjO ydjO 1817139 1817942 - ydjO gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1766 N840_1767 N840_1767 cedA cedA 1818231 1818473 - cell division modulator gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1767 N840_1768 N840_1768 katE katE 1818677 1820938 + catalase HPII%2C heme d-containing catalase%3B hydroperoxidase HPII(III) gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1768 N840_1769 N840_1769 chbG chbG 1821196 1821945 - chito-oligosaccharide deacetylase gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1769 N840_1770 N840_1770 chbF chbF 1821958 1823310 - phospho-chitobiase%3B general 6-phospho-beta-glucosidase activity gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1770 N840_1771 N840_1771 chbR chbR 1823415 1824257 - repressor of chb operon for N%2CN'-diacetylchitobiose utilization negative transcriptional regulator of cel operon gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1771 N840_1772 N840_1772 chbA chbA 1824265 1824615 - N%2CN'-diacetylchitobiose-specific enzyme IIA component of PTS PTS family enzyme IIA%2C cellobiose/arbutin/salicin sugar-specific gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1772 N840_1773 N840_1773 chbC chbC 1824666 1826024 - N%2CN'-diacetylchitobiose-specific enzyme IIC component of PTS PEP-dependent phosphotransferase enzyme II for cellobiose%2C arbutin%2C and salicin gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1773 N840_1774 N840_1774 chbB chbB 1826109 1826429 - N%2CN'-diacetylchitobiose-specific enzyme IIB component of PTS PTS family enzyme IIB%2C cellobiose/arbutin/salicin sugar-specific gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1774 N840_1775 N840_1775 osmE osmE 1826727 1827065 - DNA-binding transcriptional activator activator of ntrL gene gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1775 N840_1776 N840_1776 nadE nadE 1827267 1828094 + NAD synthetase%2C NH3/glutamine-dependent NAD synthetase%2C prefers NH3 over glutamine gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1776 N840_1777 N840_1777 cho cho 1828324 1829211 + endonuclease of nucleotide excision repair putative excinuclease subunit gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1777 N840_1778 N840_1778 ves ves 1829171 1829746 - ves gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1778 N840_1779 N840_1779 spy spy 1829949 1830434 - periplasmic ATP-independent protein refolding chaperone%2C stress-induced periplasmic protein related to spheroblast formation gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1779 N840_1780 N840_1780 astE astE 1830764 1831732 - succinylglutamate desuccinylase gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1780 N840_1781 N840_1781 astB astB 1831725 1833068 - succinylarginine dihydrolase gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1781 N840_1782 N840_1782 astD astD 1833065 1834543 - succinylglutamic semialdehyde dehydrogenase gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1782 N840_1783 N840_1783 astA astA 1834540 1835574 - arginine succinyltransferase gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1783 N840_1784 N840_1784 astC astC 1835571 1836791 - succinylornithine transaminase%2C PLP-dependent acetylornithine delta-aminotransferase gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1784 N840_1785 N840_1785 xthA xthA 1837237 1838043 + exonuclease III gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1785 N840_1786 N840_1786 ydjX ydjX 1838210 1838920 + inner membrane protein%2C TVP38/TMEM64 family gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1786 N840_1787 N840_1787 ydjY ydjY 1838925 1839602 + ydjY gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1787 N840_1788 N840_1788 ydjZ ydjZ 1839617 1840324 + Inner membrane protein%2C TVP38/TMEM64 family gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1788 N840_1789 N840_1789 ynjA ynjA 1840324 1840872 + ynjA gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1789 N840_1790 N840_1790 ynjB ynjB 1840882 1842048 + ynjB gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1790 N840_1791 N840_1791 ynjC ynjC 1842021 1843556 + putative inner membrane ABC transporter permease%2C function unknown putative transport system permease protein gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1791 N840_1792 N840_1792 ynjD ynjD 1843556 1844209 + putative transporter subunit: ATP-binding component of ABC superfamily putative ATP-binding component of a transport system gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1792 N840_1793 N840_1793 ynjE ynjE 1844276 1845583 + IscS specificity factor for molybdenum cofactor biosynthesis%3B probable alternate MoaD transpersulfidase%3B weak thiosulfate:cyanide sulfurtransferase%3B rhodanese-like protein putative thiosulfate sulfur transferase gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1793 N840_1794 N840_1794 ynjF ynjF 1845592 1846212 - inner membrane protein%2C phosphatidylglycerophosphate synthase-like protein putative cytochrome oxidase gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1794 N840_1795 N840_1795 nudG nudG 1846299 1846706 + CTP pyrophosphohydrolase%3B also hydrolyzes 2-hydroxy-dATP%2C 8-hydroxy-dGTP%2C 5-hydroxy-CTP%2C dCTP and 5-methyl-dCTP 5-hydroxy-CTP pyrophosphohydrolase gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1795 N840_1796 N840_1796 ynjH ynjH 1846672 1846944 - conserved protein%2C DUF1496 family gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1796 N840_1797 N840_1797 gdhA gdhA 1847180 1848523 + glutamate dehydrogenase%2C NADP-specific NADP-specific glutamate dehydrogenase gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1797 N840_1798 N840_1798 ynjI ynjI 1848640 1849680 - inner membrane protein gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1798 N840_1799 N840_1799 topB topB 1849808 1851769 - DNA topoisomerase III gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1799 N840_1800 N840_1800 selD selD 1851774 1852817 - selenophosphate synthase selenophosphate synthase%2C H(2)Se added to acrylyl-tRNA gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1800 N840_1801 N840_1801 ydjA ydjA 1852934 1853485 - putative oxidoreductase gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1801 N840_1802 N840_1802 sppA sppA 1853646 1855502 + protease IV (signal peptide peptidase) protease IV%2C a signal peptide peptidase gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1802 N840_1803 N840_1803 ansA ansA 1855668 1856684 + cytoplasmic L-asparaginase I gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1803 N840_1804 N840_1804 pncA pncA 1856695 1857336 + nicotinamidase/pyrazinamidase gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1804 N840_1805 N840_1805 ydjE ydjE 1857429 1858787 - putative transporter putative transport protein gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1805 N840_1806 N840_1806 ydjF ydjF 1858904 1859662 - putative DNA-binding transcriptional regulator putative DEOR-type transcriptional regulator gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1806 N840_1807 N840_1807 ydjG ydjG 1859799 1860779 - alpha-Keto reductase%2C NADH-dependent%3B can use methylglyoxal as substrate gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1807 N840_1808 N840_1808 ydjH ydjH 1860789 1861736 - putative kinase gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1808 N840_1809 N840_1809 ydjI ydjI 1861741 1862577 - putative aldolase gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1809 N840_1810 N840_1810 ydjJ ydjJ 1862598 1863641 - putative oxidoreductase%2C Zn-dependent and NAD(P)-binding protein putative oxidoreductase gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1810 N840_1811 N840_1811 ydjK ydjK 1863658 1865037 - putative transporter putative transport protein gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1811 N840_1812 N840_1812 ydjL ydjL 1865064 1866140 - putative oxidoreductase%2C Zn-dependent and NAD(P)-binding protein gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1812 N840_1813 N840_1813 yeaC yeaC 1866510 1866782 - yeaC gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1813 N840_1814 N840_1814 msrB msrB 1866824 1867237 - methionine sulfoxide reductase B gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1814 N840_1815 N840_1815 gapA gapA 1867579 1868574 + glyceraldehyde-3-phosphate dehydrogenase A gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1815 N840_1816 N840_1816 yeaD yeaD 1868658 1869542 + yeaD gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1816 N840_1817 N840_1817 yeaE yeaE 1869590 1870444 - aldo-keto reductase%2C methylglyoxal to acetol%2C NADPH-dependent putative an aldehyde reductase gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1817 N840_1818 N840_1818 mipA mipA 1870534 1871280 - scaffolding protein for murein synthesizing machinery gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1818 N840_1819 N840_1819 yeaG yeaG 1871716 1873650 + protein kinase%2C function unknown%3B autokinase gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1819 N840_1820 N840_1820 yeaH yeaH 1873763 1875045 + Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1820 N840_1821 N840_1821 yeaI yeaI 1875192 1876667 + putative membrane-anchored diguanylate cyclase gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1821 N840_1822 N840_1822 yeaJ yeaJ 1876848 1878338 + putative diguanylate cyclase gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1822 N840_1823 N840_1823 yeaK yeaK 1878381 1878884 + yeaK gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1823 N840_1824 N840_1824 yoaI yoaI 1878885 1878989 - yoaI gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1824 N840_1825 N840_1825 yeaL yeaL 1879159 1879605 + putative inner membrane protein%2C UPF0756 family gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1825 N840_1826 N840_1826 yeaM yeaM 1879562 1880382 - putative ARAC-type regulatory protein%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1826 N840_1827 N840_1827 yeaN yeaN 1880479 1881660 + putative transporter putative amino acid/amine transport protein gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1827 N840_1828 N840_1828 yeaO yeaO 1881715 1882062 + yeaO gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1828 N840_1829 N840_1829 yoaF yoaF 1882084 1882338 - conserved outer membrane lipoprotein gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1829 N840_1830 N840_1830 yeaP yeaP 1882521 1883546 + diguanylate cyclase gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1830 N840_1831 N840_1831 yoaK yoaK 1883579 1883677 + expressed protein%2C membrane-associated gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1831 N840_1832 N840_1832 yoaJ yoaJ 1883680 1883754 + expressed protein%2C membrane-associated gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1832 N840_1833 N840_1833 yeaQ yeaQ 1883813 1884061 - conserved protein%2C UPF0410 family gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1833 N840_1834 N840_1834 yoaG yoaG 1884209 1884391 - yoaG gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1834 N840_1835 N840_1835 yeaR yeaR 1884395 1884754 - yeaR gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1835 N840_1836 N840_1836 leuE leuE 1884927 1885565 - neutral amino-acid efflux system gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1836 N840_1837 N840_1837 dmlR dmlR 1885692 1886615 - DNA-binding transcriptional activator for dmlA putative transcriptional regulator LYSR-type gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1837 N840_1838 N840_1838 dmlA dmlA 1886718 1887803 + D-malate oxidase%2C NAD-dependent%3B probable tartrate dehydrogenase putative tartrate dehydrogenase gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1838 N840_1839 N840_1839 yeaV yeaV 1887994 1889439 + putative transporter putative transport protein gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1839 N840_1840 N840_1840 yeaW yeaW 1889471 1890595 + putative 2Fe-2S cluster-containing protein gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1840 N840_1841 N840_1841 yeaX yeaX 1890651 1891616 + putative oxidoreductase putative diogenase beta subunit gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1841 N840_1842 N840_1842 rnd rnd 1891670 1892797 - ribonuclease D RNase D%2C processes tRNA precursor gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1842 N840_1843 N840_1843 fadD fadD 1892867 1894552 - acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1843 N840_1844 N840_1844 yeaY yeaY 1894757 1895338 - lipoprotein%2C RpoE-regulated%2C fucntion unknown putative outer membrane protein gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1844 N840_1845 N840_1845 tsaB tsaB 1895378 1896073 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein%3B binding partner and protease for TsaD gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1845 N840_1846 N840_1846 yoaA yoaA 1896131 1898041 - conserved protein with nucleoside triphosphate hydrolase domain putative enzyme gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1846 N840_1847 N840_1847 yoaB yoaB 1898173 1898517 + putative reactive intermediate deaminase gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1847 N840_1848 N840_1848 yoaC yoaC 1898939 1899238 + conserved protein%2C DUF1889 family gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1848 N840_1849 N840_1849 yoaH yoaH 1899358 1899537 - yoaH gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1849 N840_1850 N840_1850 pabB pabB 1899611 1900972 + aminodeoxychorismate synthase%2C subunit I p-aminobenzoate synthetase%2C component I gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1850 N840_1851 N840_1851 nudL nudL 1900976 1901554 + putative NUDIX hydrolase gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1851 N840_1852 N840_1852 sdaA sdaA 1901738 1903102 + L-serine deaminase I L-serine deaminase gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1852 N840_1853 N840_1853 yoaD yoaD 1903233 1904831 + putative membrane-anchored cyclic-di-GMP phosphodiesterase%2C regulator of cellulose production gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1853 N840_1854 N840_1854 yoaE yoaE 1904835 1906391 - fused predicted membrane protein/conserved protein putative transport protein gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1854 N840_1855 N840_1855 manX manX 1906854 1907825 + fused mannose-specific PTS enzymes: IIA component/IIB component PTS enzyme IIAB%2C mannose-specific gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1855 N840_1856 N840_1856 manY manY 1907888 1908688 + mannose-specific enzyme IIC component of PTS PTS enzyme IIC%2C mannose-specific gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1856 N840_1857 N840_1857 manZ manZ 1908701 1909552 + mannose-specific enzyme IID component of PTS PTS enzyme IID%2C mannose-specific gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1857 N840_1858 N840_1858 yobD yobD 1909607 1910065 + inner membrane protein%2C UPF0266 family gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1858 N840_1859 N840_1859 mntP mntP 1910494 1911060 + putative Mn(2+) efflux pump%2C mntR-regulated gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1859 N840_1860 N840_1860 rlmA rlmA 1911057 1911866 - 23S rRNA m(1)G745 methyltransferase%2C SAM-dependent gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1860 N840_1861 N840_1861 cspC cspC 1912032 1912241 - stress protein%2C member of the CspA-family cold shock protein gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1861 N840_1862 N840_1862 yobF yobF 1912254 1912397 - yobF gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1862 N840_1863 N840_1863 yebO yebO 1913067 1913354 - putative inner membrane protein gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1863 N840_1864 N840_1864 mgrB mgrB 1913429 1913572 - regulatory peptide for PhoPQ%2C feedback inhibition gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1864 N840_1865 N840_1865 yobH yobH 1913731 1913970 + yobH gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1865 N840_1866 N840_1866 kdgR kdgR 1914114 1914905 - DNA-binding transcriptional regulator f kdgK%2C kdgT%2C eda gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1866 N840_1867 N840_1867 yebQ yebQ 1915082 1916455 + putative transporter putative transport protein gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1867 N840_1868 N840_1868 htpX htpX 1916501 1917382 - putative endopeptidase heat shock protein%2C integral membrane protein gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1868 N840_1869 N840_1869 prc prc 1917574 1919622 - carboxy-terminal protease for penicillin-binding protein 3 gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1869 N840_1870 N840_1870 proQ proQ 1919642 1920340 - RNA chaperone%2C probable regulator of ProP translation regulator of ProP%3B putative structural element which influences activation of ProP gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1870 N840_1871 N840_1871 msrC msrC 1920437 1920934 - free methionine-(R)-sulfoxide reductase gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1871 N840_1872 N840_1872 yebS yebS 1921064 1922347 + inner membrane protein gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1872 N840_1873 N840_1873 yebT yebT 1922316 1924949 + yebT gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1873 N840_1874 N840_1874 rsmF rsmF 1925030 1926469 + 16S rRNA m(5)C1407 methyltransferase%2C SAM-dependent gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1874 N840_1875 N840_1875 yebV yebV 1926587 1926823 + yebV gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1875 N840_1876 N840_1876 yebW yebW 1926928 1927119 + yebW gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1876 N840_1877 N840_1877 pphA pphA 1927120 1927776 - serine/threonine-specific protein phosphatase 1 gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1877 N840_1878 N840_1878 ryeA ryeA 1927873 1928121 + novel sRNA%2C function unknown identified in a large scale screen ncRNA gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1878 N840_1879 N840_1879 ryeB ryeB 1927971 1928091 - novel sRNA%2C function unknown identified in a large scale screen ncRNA gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1879 N840_1880 N840_1880 yebY yebY 1928172 1928513 - yebY gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1880 N840_1881 N840_1881 yebZ yebZ 1928526 1929398 - inner membrane protein putative resistance protein gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1881 N840_1882 N840_1882 yobA yobA 1929402 1929776 - yobA gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1882 N840_1883 N840_1883 holE holE 1929915 1930145 + DNA polymerase III%2C theta subunit gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1883 N840_1884 N840_1884 yobB yobB 1930247 1930903 + yobB gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1884 N840_1885 N840_1885 exoX exoX 1930927 1931589 + exodeoxyribonuclease 10%3B DNA exonuclease X gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1885 N840_1886 N840_1886 ptrB ptrB 1931586 1933646 - protease II gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1886 N840_1887 N840_1887 yebE yebE 1933855 1934514 - inner membrane protein%2C DUF533 family gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1887 N840_1888 N840_1888 yebF yebF 1934841 1935197 - extracellular Colicin M immunity family protein gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1888 N840_1889 N840_1889 yebG yebG 1935264 1935554 - conserved protein regulated by LexA gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1889 N840_1890 N840_1890 purT purT 1935688 1936866 + phosphoribosylglycinamide formyltransferase 2 gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1890 N840_1891 N840_1891 eda eda 1936922 1937563 - multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1891 N840_1892 N840_1892 edd edd 1937600 1939411 - 6-phosphogluconate dehydratase gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1892 N840_1893 N840_1893 zwf zwf 1939646 1941121 - glucose-6-phosphate 1-dehydrogenase gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1893 N840_1894 N840_1894 yebK yebK 1941459 1942328 + putative DNA-binding transcriptional regulator gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1894 N840_1895 N840_1895 pykA pykA 1942456 1943898 + pyruvate kinase II pyruvate kinase II%2C glucose stimulated gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1895 N840_1896 N840_1896 waaN waaN 1944029 1945000 - myristoyl-acyl carrier protein (ACP)-dependent acyltransferase suppressor of htrB%2C heat shock protein gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1896 N840_1897 N840_1897 yebA yebA 1945120 1946442 - putative peptidase gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1897 N840_1898 N840_1898 znuA znuA 1946458 1947390 - zinc transporter subunit: periplasmic-binding component of ABC superfamily gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1898 N840_1899 N840_1899 znuC znuC 1947469 1948224 + zinc transporter subunit: ATP-binding component of ABC superfamily gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1899 N840_1900 N840_1900 znuB znuB 1948221 1949006 + zinc transporter subunit: membrane component of ABC superfamily gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1900 N840_1901 N840_1901 ruvB ruvB 1949153 1950163 - ATP-dependent DNA helicase%2C component of RuvABC resolvasome Holliday junction helicase subunit A%3B branch migration%3B repair gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1901 N840_1902 N840_1902 ruvA ruvA 1950172 1950783 - component of RuvABC resolvasome%2C regulatory subunit Holliday junction helicase subunit B%3B branch migration%3B repair gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1902 N840_1903 N840_1903 yobI yobI 1950922 1950987 - yobI expressed protein gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1903 N840_1904 N840_1904 yebB yebB 1951058 1951660 + conserved protein%2C DUF830 family gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1904 N840_1905 N840_1905 ruvC ruvC 1951662 1952183 - component of RuvABC resolvasome%2C endonuclease Holliday junction nuclease%3B resolution of structures%3B repair gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1905 N840_1906 N840_1906 yebC yebC 1952218 1952958 - conserved protein%2C UPF0082 family gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1906 N840_1907 N840_1907 nudB nudB 1952987 1953439 - dihydroneopterin triphosphate pyrophosphatase gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1907 N840_1908 N840_1908 aspS aspS 1953557 1955329 - aspartyl-tRNA synthetase aspartate tRNA synthetase gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1908 N840_1909 N840_1909 yecD yecD 1955640 1956206 + isochorismatase family protein gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1909 N840_1910 N840_1910 yecE yecE 1956203 1957021 + conserved protein%2C UPF0759 family gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1910 N840_1911 N840_1911 yecN yecN 1957074 1957469 + inner membrane protein%2C MAPEG family gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1911 N840_1912 N840_1912 cmoA cmoA 1957510 1958253 + tRNA cmo(5)U34 methyltransferase%2C SAM-dependent gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1912 N840_1913 N840_1913 cmoB cmoB 1958250 1959221 + tRNA mo(5)U34 methyltransferase%2C SAM-dependent putative enzyme gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1913 N840_1914 N840_1914 torZ torZ 1959386 1961815 - trimethylamine N-oxide reductase system III%2C catalytic subunit gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1914 N840_1915 N840_1915 torY torY 1961840 1962940 - TMAO reductase III (TorYZ)%2C cytochrome c-type subunit gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1915 N840_1916 N840_1916 cutC cutC 1963328 1964074 - copper homeostasis protein gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1916 N840_1917 N840_1917 yecM yecM 1964088 1964654 - putative metal-binding enzyme gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1917 N840_1918 N840_1918 argS argS 1964870 1966603 + arginyl-tRNA synthetase arginine tRNA synthetase gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1918 N840_1919 N840_1919 yecT yecT 1966780 1967268 + yecT gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1919 N840_1920 N840_1920 flhE flhE 1967388 1967780 - proton seal during flagellar secretion flagellar protein gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1920 N840_1921 N840_1921 flhA flhA 1967780 1969858 - putative flagellar export pore protein flagellar biosynthesis%3B possible export of flagellar proteins gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1921 N840_1922 N840_1922 flhB flhB 1969851 1970999 - flagellin export apparatus%2C substrate specificity protein putative part of export apparatus for flagellar proteins gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1922 N840_1923 N840_1923 cheZ cheZ 1971201 1971845 - chemotaxis regulator%2C protein phosphatase for CheY chemotactic response%3B CheY protein phophatase%3B antagonist of CheY as switch regulator gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1923 N840_1924 N840_1924 cheY cheY 1971856 1972245 - chemotaxis regulator transmitting signal to flagellar motor component chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1924 N840_1925 N840_1925 cheB cheB 1972260 1973309 - fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA response regulator for chemotaxis (cheA sensor)%3B protein methylesterase gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1925 N840_1926 N840_1926 cheR cheR 1973312 1974172 - chemotaxis regulator%2C protein-glutamate methyltransferase response regulator for chemotaxis%3B protein glutamate methyltransferase gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1926 N840_1927 N840_1927 tap tap 1974191 1975792 - methyl-accepting protein IV methyl-accepting chemotaxis protein IV%2C peptide sensor receptor gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1927 N840_1928 N840_1928 tar tar 1975838 1977499 - methyl-accepting chemotaxis protein II methyl-accepting chemotaxis protein II%2C aspartate sensor receptor gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1928 N840_1929 N840_1929 cheW cheW 1977644 1978147 - purine-binding chemotaxis protein positive regulator of CheA protein activity gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1929 N840_1930 N840_1930 cheA cheA 1978168 1980132 - fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein sensory transducer kinase between chemo- signal receptors and CheB and CheY gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1930 N840_1931 N840_1931 motB motB 1980137 1981063 - protein that enables flagellar motor rotation enables flagellar motor rotation%2C linking torque machinery to cell wall gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1931 N840_1932 N840_1932 motA motA 1981060 1981947 - proton conductor component of flagella motor proton conductor component of motor%3B no effect on switching gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1932 N840_1933 N840_1933 flhC flhC 1982074 1982652 - DNA-binding transcriptional dual regulator with FlhD regulator of flagellar biosynthesis acting on class 2 operons%3B transcription initiation factor? gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1933 N840_1934 N840_1934 flhD flhD 1982655 1983005 - DNA-binding transcriptional dual regulator with FlhC regulator of flagellar biosynthesis%2C acting on class 2 operons%3B transcriptional initiation factor? gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1934 N840_1935 N840_1935 uspC uspC 1983785 1984213 + universal stress protein putative regulator gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1935 N840_1936 N840_1936 otsA otsA 1984220 1985644 - trehalose-6-phosphate synthase gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1936 N840_1937 N840_1937 otsB otsB 1985619 1986419 - trehalose-6-phosphate phosphatase%2C biosynthetic trehalose-6-phosphate phophatase%2C biosynthetic gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1937 N840_1938 N840_1938 araH araH 1986586 1987572 - fused L-arabinose transporter subunits of ABC superfamily: membrane components high-affinity L-arabinose transport protein (ABC superfamily%2C membrane) gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1938 N840_1939 N840_1939 araG araG 1987587 1989101 - fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components ATP-binding component of high-affinity L-arabinose transport system gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1939 N840_1940 N840_1940 araF araF 1989171 1990160 - L-arabinose transporter subunit L-arabinose-binding periplasmic protein%3B periplasmic-binding component of ABC superfamily gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1940 N840_1941 N840_1941 ftnB ftnB 1990957 1991460 + ferritin B%2C probable ferrous iron reservoir ferritin-like protein gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1941 N840_1942 N840_1942 yecJ yecJ 1991539 1991790 - yecJ gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1942 N840_1943 N840_1943 azuC azuC 1991905 1991991 - azuC expressed protein gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1943 N840_1944 N840_1944 yecR yecR 1992254 1992577 + lipoprotein%2C function unknown gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1944 N840_1945 N840_1945 ftnA ftnA 1992748 1993245 + ferritin iron storage protein (cytoplasmic) cytoplasmic ferritin (an iron storage protein) gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1945 N840_1946 N840_1946 yecH yecH 1993283 1993522 - DUF2492 family protein%2C function unknown gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1946 N840_1947 N840_1947 tyrP tyrP 1993713 1994924 + tyrosine transporter tyrosine-specific transport system gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1947 N840_1948 N840_1948 yecA yecA 1994986 1995651 - conserved protein%2C UPF0149 family gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1948 N840_1949 N840_1949 leuZ leuZ 1995847 1995933 - tRNA-Leu anticodon: GAG tRNA gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1949 N840_1950 N840_1950 cysT cysT 1995946 1996019 - tRNA-Cys anticodon: GCA tRNA gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1950 N840_1951 N840_1951 glyW glyW 1996074 1996149 - tRNA-Gly anticodon: GCC tRNA gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1951 N840_1952 N840_1952 pgsA pgsA 1996301 1996849 - phosphatidylglycerophosphate synthetase phosphatidylglycerophosphate synthetase %3D CDP-1%2C2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1952 N840_1953 N840_1953 uvrC uvrC 1996906 1998738 - excinuclease UvrABC%2C endonuclease subunit excinuclease ABC%2C subunit C%3B repair of UV damage to DNA gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1953 N840_1954 N840_1954 uvrY uvrY 1998735 1999391 - DNA-binding response regulator in two-component regulatory system with BarA putative 2-component transcriptional regulator gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1954 N840_1955 N840_1955 yecF yecF 1999850 2000074 + conserved protein%2C DUF2594 family gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1955 N840_1956 N840_1956 sdiA sdiA 2000142 2000864 - quorum-sensing transcriptional activator transcriptional regulator of ftsQAZ gene cluster gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1956 N840_1957 N840_1957 yecC yecC 2001094 2001846 - putative transporter subunit: ATP-binding component of ABC superfamily putative ATP-binding component of a transport system gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1957 N840_1958 N840_1958 yecS yecS 2001843 2002511 - inner membrane protein%2C predicted transporter subunit: membrane component of ABC superfamily putative transport system permease protein (former yecC) gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1958 N840_1959 N840_1959 dcyD dcyD 2002526 2003512 - D-cysteine desulfhydrase%2C PLP-dependent putative 1-aminocyclopropane-1-carboxylate deaminase gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1959 N840_1960 N840_1960 fliY fliY 2003617 2004417 - cystine transporter subunit putative periplasmic binding transport protein%3B periplasmic-binding component of ABC superfamily gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1960 N840_1961 N840_1961 fliZ fliZ 2004505 2005056 - RpoS antagonist%3B putative regulator of FliA activity gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1961 N840_1962 N840_1962 fliA fliA 2005102 2005821 - RNA polymerase%2C sigma 28 (sigma F) factor flagellar biosynthesis%3B alternative sigma factor 28%3B regulation of flagellar operons gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1962 N840_1963 N840_1963 fliC fliC 2006142 2007638 - flagellar filament structural protein (flagellin) flagellar biosynthesis%3B flagellin%2C filament structural protein gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1963 N840_1964 N840_1964 fliD fliD 2007904 2009310 + flagellar filament capping protein flagellar biosynthesis%3B filament capping protein%3B enables filament assembly gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1964 N840_1965 N840_1965 fliS fliS 2009335 2009745 + flagellar protein potentiates polymerization flagellar biosynthesis%3B repressor of class 3a and 3b operons (RflA activity) gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1965 N840_1966 N840_1966 fliT fliT 2009745 2010110 + putative chaperone flagellar biosynthesis%3B repressor of class 3a and 3b operons (RflA activity) gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1966 N840_1967 N840_1967 amyA amyA 2010188 2011675 + cytoplasmic alpha-amylase gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1967 N840_1968 N840_1968 yedD yedD 2011709 2012122 - lipoprotein gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1968 N840_1969 N840_1969 yedE yedE 2012309 2013514 + putative inner membrane protein putative transport system permease protein gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1969 N840_1970 N840_1970 yedF yedF 2013511 2013744 + conserved protein%2C UPF0033 family gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1970 N840_1971 N840_1971 yedK yedK 2013853 2014521 + yedK gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1971 N840_1972 N840_1972 yedL yedL 2014632 2015111 + putative acyltransferase gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1972 N840_1973 N840_1973 yedN yedN 2015255 2016383 - pseudogene%2C IpaH/YopM family pseudogene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1973 N840_1974 N840_1974 intG intG 2016534 2016695 + predicted defective phage integrase (pseudogene)%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1974 N840_1975 N840_1975 fliE fliE 2016732 2017046 - flagellar basal-body component flagellar biosynthesis%3B basal-body component%2C possibly at (MS-ring)-rod junction gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1975 N840_1976 N840_1976 fliF fliF 2017261 2018919 + flagellar basal-body MS-ring and collar protein flagellar biosynthesis%3B basal-body MS(membrane and supramembrane)-ring and collar protein gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1976 N840_1977 N840_1977 fliG fliG 2018912 2019907 + flagellar motor switching and energizing component flagellar biosynthesis%2C component of motor switching and energizing%2C enabling rotation and determining its direction gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1977 N840_1978 N840_1978 fliH fliH 2019900 2020586 + negative regulator of FliI ATPase activity flagellar biosynthesis%3B export of flagellar proteins? gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1978 N840_1979 N840_1979 fliI fliI 2020586 2021959 + flagellum-specific ATP synthase gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1979 N840_1980 N840_1980 fliJ fliJ 2021978 2022421 + flagellar protein flagellar fliJ protein gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1980 N840_1981 N840_1981 fliK fliK 2022418 2023545 + flagellar hook-length control protein gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1981 N840_1982 N840_1982 fliL fliL 2023650 2024114 + flagellar biosynthesis protein flagellar biosynthesis gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1982 N840_1983 N840_1983 fliM fliM 2024119 2025123 + flagellar motor switching and energizing component flagellar biosynthesis%2C component of motor switch and energizing%2C enabling rotation and determining its direction gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1983 N840_1984 N840_1984 fliN fliN 2025120 2025533 + flagellar motor switching and energizing component flagellar biosynthesis%2C component of motor switch and energizing%2C enabling rotation and determining its direction gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1984 N840_1985 N840_1985 fliO fliO 2025536 2025901 + flagellar biosynthesis protein flagellar biosynthesis gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1985 N840_1986 N840_1986 fliP fliP 2025901 2026638 + flagellar biosynthesis protein flagellar biosynthesis gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1986 N840_1987 N840_1987 fliQ fliQ 2026648 2026917 + flagellar biosynthesis protein flagellar biosynthesis gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1987 N840_1988 N840_1988 fliR fliR 2026925 2027710 + flagellar export pore protein flagellar biosynthesis gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1988 N840_1989 N840_1989 rcsA rcsA 2028000 2028623 + DNA-binding transcriptional activator%2C co-regulator with RcsB positive regulator for ctr capsule biosynthesis%2C positive transcription factor gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1989 N840_1990 N840_1990 dsrB dsrB 2028667 2028855 - dsrB gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1990 N840_1991 N840_1991 yodD yodD 2029018 2029245 + yodD gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1991 N840_1992 N840_1992 dsrA dsrA 2029259 2029345 - sRNA antisense regulator enhances translation of RpoS%2C Hfq-dependent silencer of rcsA gene%2C interacts with rpoS translation%3B component of acid resistance regulatory circuit gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1992 N840_1993 N840_1993 yedP yedP 2029543 2030358 + putative mannosyl-3-phosphoglycerate phosphatase gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1993 N840_1994 N840_1994 yedQ yedQ 2030355 2032049 - putative membrane-anchored diguanylate cyclase gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1994 N840_1995 N840_1995 yodC yodC 2032220 2032402 - yodC gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1995 N840_1996 N840_1996 yedI yedI 2032481 2033398 - conserved inner membrane protein gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1996 N840_1997 N840_1997 yedA yedA 2033571 2034491 + amino acid exporter for phenylalanine%2C threonine putative transmembrane subunit gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1997 N840_1998 N840_1998 vsr vsr 2034480 2034950 - DNA mismatch endonuclease of very short patch repair DNA mismatch endonuclease%2C patch repair protein gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1998 N840_1999 N840_1999 dcm dcm 2034931 2036349 - DNA cytosine methyltransferase gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=N840_1999 N840_2000 N840_2000 yedJ yedJ 2036416 2037111 - putative hydrolase%2C HD superfamily gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2000 N840_2001 N840_2001 yedR yedR 2037151 2037516 - inner membrane protein gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2001 N840_2002 N840_2002 rseX rseX 2037681 2037771 + sRNA antisense regulator of ompA and ompC translation%2C Hfq-dependent gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2002 N840_2003 N840_2003 yedS yedS 2038083 2039275 + pseudogene%2C outer membrane protein homology%3B putative outer membrane protein pseudogene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2003 N840_2004 N840_2004 hchA hchA 2039867 2040718 + glyoxalase III and Hsp31 molecular chaperone gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2004 N840_2005 N840_2005 yedV yedV 2040826 2042184 - putative sensory kinase in two-component regulatory system with YedW putative 2-component sensor protein gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2005 N840_2006 N840_2006 yedW yedW 2042184 2042855 - putative DNA-binding response regulator in two-component system with YedV putative 2-component transcriptional regulator gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2006 N840_2007 N840_2007 hiuH hiuH 2042988 2043401 + hydroxyisourate hydrolase gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2007 N840_2008 N840_2008 yedY yedY 2043510 2044514 + membrane-anchored%2C periplasmic TMAO%2C DMSO reductase putative reductase gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2008 N840_2009 N840_2009 yedZ yedZ 2044515 2045150 + inner membrane heme subunit for periplasmic YedYZ reductase gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2009 N840_2010 N840_2010 zinT zinT 2045407 2046057 + zinc and cadmium binding protein%2C periplasmic gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2010 N840_2011 N840_2011 yodB yodB 2046400 2046930 + cytochrome b561-like protein cytochrome b561 homolog 1 gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2011 N840_2012 N840_2012 serU serU 2047500 2047589 - tRNA-Ser anticodon: CGA tRNA gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2012 N840_2013 N840_2013 mtfA mtfA 2047683 2048480 + anti-repressor for DgsA(Mlc) gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2013 N840_2014 N840_2014 asnT asnT 2048581 2048656 + tRNA-Asn anticodon: GUU tRNA gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2014 N840_2015 N840_2015 yeeJ yeeJ 2048970 2056046 + putative adhesin putative factor gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2015 N840_2016 N840_2016 yeeL yeeL 2056308 2057360 - pseudogene%2C glycosyltransferase homology pseudogene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2016 N840_2017 N840_2017 shiA shiA 2057675 2058991 + shikimate transporter gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2017 N840_2018 N840_2018 amn amn 2059093 2060547 + AMP nucleosidase gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2018 N840_2019 N840_2019 yeeN yeeN 2060890 2061606 + conserved protein%2C UPF0082 family gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2019 N840_2020 N840_2020 asnW asnW 2062059 2062134 - tRNA-Asn anticodon: GUU tRNA gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2020 N840_2021 N840_2021 yeeO yeeO 2062235 2063722 - putative multdrug exporter%2C MATE family gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2021 N840_2022 N840_2022 asnU asnU 2063883 2063958 + tRNA-Asn anticodon: GUU tRNA gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2022 N840_2023 N840_2023 cbl cbl 2063996 2064946 - DNA-binding transcriptional activator for the ssuEADCB and tauABCD operons transcriptional regulator cys regulon%3B accessory regulatory circuit affecting cysM gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2023 N840_2024 N840_2024 nac nac 2065048 2065965 - DNA-binding transcriptional dual regulator of nitrogen assimilation nitrogen assimilation control protein gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2024 N840_2025 N840_2025 asnV asnV 2066292 2066367 + tRNA-Asn anticodon: GUU tRNA gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2025 N840_2026 N840_2026 erfK erfK 2066423 2067355 - L%2CD-transpeptidase linking Lpp to murein gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2026 N840_2027 N840_2027 cobT cobT 2067420 2068499 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2027 N840_2028 N840_2028 cobS cobS 2068511 2069254 - cobalamin synthase gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2028 N840_2029 N840_2029 cobU cobU 2069251 2069796 - bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransferase cobinamide kinase/cobinamide phosphate guanylyltransferase gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2029 N840_2030 N840_2030 yeeH yeeH 2070100 2070186 - pseudogene%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2030 N840_2031 N840_2031 insH1 insH1 2070337 2071353 - IS5 transposase and trans-activator gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2031 N840_2032 N840_2032 yoeG yoeG 2071392 2071924 - pseudogene%2C CP4-44 putative prophage remnant%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2032 N840_2033 N840_2033 yoeH yoeH 2072293 2072451 - pseudogene%2C CP4-44 putative prophage remnant%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2033 N840_2034 N840_2034 yoeA yoeA 2072667 2074506 + CP4-44 prophage%3B predicted disrupted hemin or colicin receptor%3BPhage or Prophage Related%3B interrupted by IS2 and C-terminal deletion%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2034 N840_2035 N840_2035 insD1 insD1 2072984 2073889 - IS2 transposase TnpB gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2035 N840_2036 N840_2036 insC1 insC1 2073847 2074212 - IS2 repressor TnpA gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2036 N840_2037 N840_2037 yeeP yeeP 2074692 2075243 + pseudogene%2C CP4-44 prophage%3B predicted GTP-binding protein%3BPhage or Prophage Related%3B putative histone%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2037 N840_2038 N840_2038 isrC isrC 2075347 2075550 + novel sRNA%2C CP4-44%3B putative prophage remnant identified in a large scale screen ncRNA gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2038 N840_2039 N840_2039 flu flu 2075571 2078690 + CP4-44 prophage%3B antigen 43 (Ag43) phase-variable biofilm formation autotransporter antigen 43%2C phase-variable bipartite outer membrane fluffing protein gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2039 N840_2040 N840_2040 yeeR yeeR 2078811 2080343 + CP4-44 prophage%3B predicted membrane protein gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2040 N840_2041 N840_2041 yeeS yeeS 2080340 2080786 + CP4-44 prophage%3B predicted DNA repair protein putative DNA repair protein%2C RADC family gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2041 N840_2042 N840_2042 yeeT yeeT 2080849 2081070 + CP4-44 prophage%3B putative protein gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2042 N840_2043 N840_2043 cbeA cbeA 2081144 2081512 + CP4-44 prophage%3B cytoskeleton bundling-enhancing factor A%3B CbtA antitoxin putative structural protein gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2043 N840_2044 N840_2044 cbtA cbtA 2081601 2081975 + CP4-44 prophage%3B toxin of the YeeV-YeeU toxin-antitoxin system gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2044 N840_2045 N840_2045 yeeW yeeW 2081972 2082139 + CP4-44 prophage%3B putative protein%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2045 N840_2046 N840_2046 yoeD yoeD 2082581 2082709 - pseudogene%2C CP4-44 putative prophage remnant%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2046 N840_2047 N840_2047 yoeF yoeF 2082778 2082963 + pseudogene%2C CP4-44 putative prophage remnant%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2047 N840_2048 N840_2048 yeeX yeeX 2083064 2083393 - conserved protein%2C UPF0265 family putative alpha helix protein gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2048 N840_2049 N840_2049 yeeA yeeA 2083565 2084623 - inner membrane protein%2C FUSC family gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2049 N840_2050 N840_2050 sbmC sbmC 2084821 2085294 - DNA gyrase inhibitor SbmC protein gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2050 N840_2051 N840_2051 dacD dacD 2085413 2086579 - D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) penicillin binding protein 6b gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2051 N840_2052 N840_2052 sbcB sbcB 2086788 2088215 + exonuclease I exonuclease I%2C 3' --> 5' specific%3B deoxyribophosphodiesterase gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2052 N840_2053 N840_2053 yeeD yeeD 2088258 2088485 - yeeD gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2053 N840_2054 N840_2054 yeeE yeeE 2088499 2089557 - inner membrane protein%2C UPF0394 family putative transport system permease protein gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2054 N840_2055 N840_2055 plaP plaP 2089736 2091094 - putrescine importer%2C low affinity putative amino acid/amine transport protein gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2055 N840_2056 N840_2056 yoeI yoeI 2091084 2091146 - yoeI expressed protein gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2056 N840_2057 N840_2057 yeeY yeeY 2091361 2092290 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2057 N840_2058 N840_2058 yeeZ yeeZ 2092336 2093160 - putative epimerase%2C with NAD(P)-binding Rossmann-fold domain putative enzyme of sugar metabolism gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2058 N840_2059 N840_2059 yoeB yoeB 2093243 2093497 - toxin of the YoeB-YefM toxin-antitoxin system gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2059 N840_2060 N840_2060 yefM yefM 2093494 2093745 - antitoxin of the YoeB-YefM toxin-antitoxin system gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2060 N840_2061 N840_2061 hisL hisL 2094028 2094078 + his operon leader peptide gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2061 N840_2062 N840_2062 hisG hisG 2094224 2095123 + ATP phosphoribosyltransferase gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2062 N840_2063 N840_2063 hisD hisD 2095129 2096433 + bifunctional histidinal dehydrogenase/ histidinol dehydrogenase L-histidinal:NAD+ oxidoreductase%3B L-histidinol:NAD+ oxidoreductase gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2063 N840_2064 N840_2064 hisC hisC 2096430 2097500 + histidinol-phosphate aminotransferase gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2064 N840_2065 N840_2065 hisB hisB 2097500 2098567 + fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2065 N840_2066 N840_2066 hisH hisH 2098567 2099157 + imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit with HisF glutamine amidotransferase subunit of heterodimer with HisF %3D imidazole glycerol phosphate synthase holoenzyme gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2066 N840_2067 N840_2067 hisA hisA 2099157 2099894 + N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2067 N840_2068 N840_2068 hisF hisF 2099876 2100652 + imidazole glycerol phosphate synthase%2C catalytic subunit with HisH imidazole glycerol phosphate synthase subunit in heterodimer with HisH %3D imidazole glycerol phsphate synthase holoenzyme gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2068 N840_2069 N840_2069 hisI hisI 2100646 2101257 + fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase phosphoribosyl-amp cyclohydrolase%3B phosphoribosyl-ATP pyrophosphatase gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2069 N840_2070 N840_2070 wzzB wzzB 2101353 2102333 - regulator of length of O-antigen component of lipopolysaccharide chains gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2070 N840_2071 N840_2071 ugd ugd 2102479 2103645 - UDP-glucose 6-dehydrogenase gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2071 N840_2072 N840_2072 gnd gnd 2103894 2105300 - 6-phosphogluconate dehydrogenase%2C decarboxylating gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2072 N840_2073 N840_2073 wbbL wbbL 2105428 2107421 - lipopolysaccharide biosynthesis protein%2C N-ter fragment (pseudogene) pseudogene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2073 N840_2074 N840_2074 insH1 insH1 2105927 2106943 - IS5 transposase and trans-activator gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2074 N840_2075 N840_2075 wbbK wbbK 2107423 2108541 - lipopolysaccharide biosynthesis protein putative glucose transferase gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2075 N840_2076 N840_2076 wbbJ wbbJ 2108526 2109116 - putative lipopolysaccharide biosynthesis O-acetyl transferase putative O-acetyl transferase gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2076 N840_2077 N840_2077 wbbI wbbI 2109097 2110089 - d-Galf:alpha-d-Glc beta-1%2C6-galactofuranosyltransferase putative Galf transferase gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2077 N840_2078 N840_2078 wbbH wbbH 2110092 2111258 - O-antigen polymerase gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2078 N840_2079 N840_2079 glf glf 2111258 2112361 - UDP-galactopyranose mutase%2C FAD/NAD(P)-binding protein UDP-galactopyranose mutase gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2079 N840_2080 N840_2080 wzxB wzxB 2112369 2113616 - putative polisoprenol-linked O-antigen transporter putative O-antigen transporter gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2080 N840_2081 N840_2081 rfbC rfbC 2113613 2114170 - dTDP-4-deoxyrhamnose-3%2C5-epimerase dTDP-6-deoxy-D-glucose-3%2C5 epimerase gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2081 N840_2082 N840_2082 rfbA rfbA 2114170 2115051 - glucose-1-phosphate thymidylyltransferase dTDP-glucose pyrophosphorylase gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2082 N840_2083 N840_2083 rfbD rfbD 2115109 2116008 - dTDP-4-dehydrorhamnose reductase subunit%2C NAD(P)-binding%2C of dTDP-L-rhamnose synthase dTDP-6-deoxy-L-mannose-dehydrogenase gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2083 N840_2084 N840_2084 rfbB rfbB 2116008 2117093 - dTDP-glucose 4%2C6 dehydratase%2C NAD(P)-binding protein dTDP-glucose 4%2C6 dehydratase gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2084 N840_2085 N840_2085 wcaN wcaN 2117466 2118359 - putative regulatory subunit for GalU gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2085 N840_2086 N840_2086 wcaM wcaM 2118534 2119928 - colanic acid biosynthesis protein putative colanic acid biosynthesis protein gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2086 N840_2087 N840_2087 wcaL wcaL 2119939 2121159 - putative glycosyl transferase putative colanic acid biosynthesis glycosyl transferase gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2087 N840_2088 N840_2088 wcaK wcaK 2121156 2122436 - colanic acid biosynthesis protein putative galactokinase gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2088 N840_2089 N840_2089 wzxC wzxC 2122712 2124190 - putative colanic acid exporter probable export protein gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2089 N840_2090 N840_2090 wcaJ wcaJ 2124192 2125586 - colanic biosynthesis UDP-glucose lipid carrier transferase putative UDP-glucose lipid carrier transferase gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2090 N840_2091 N840_2091 cpsG cpsG 2125641 2127011 - phosphomannomutase gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2091 N840_2092 N840_2092 cpsB cpsB 2127116 2128552 - mannose-1-phosphate guanyltransferase gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2092 N840_2093 N840_2093 wcaI wcaI 2128555 2129778 - putative glycosyl transferase putative colanic biosynthesis glycosyl transferase gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2093 N840_2094 N840_2094 wcaH wcaH 2129775 2130254 - GDP-mannose mannosyl hydrolase gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2094 N840_2095 N840_2095 wcaG wcaG 2130257 2131222 - bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2095 N840_2096 N840_2096 gmd gmd 2131225 2132346 - GDP-D-mannose dehydratase%2C NAD(P)-binding protein gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2096 N840_2097 N840_2097 wcaF wcaF 2132372 2132920 - putative acyl transferase putative transferase gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2097 N840_2098 N840_2098 wcaE wcaE 2132936 2133682 - putative glycosyl transferase putative colanic acid biosynthesis glycosyl transferase gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2098 N840_2099 N840_2099 wcaD wcaD 2133693 2134910 - putative colanic acid polymerase gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2099 N840_2100 N840_2100 wcaC wcaC 2134885 2136102 - putative glycosyl transferase gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2100 N840_2101 N840_2101 wcaB wcaB 2136099 2136587 - putative acyl transferase putative transferase gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2101 N840_2102 N840_2102 wcaA wcaA 2136590 2137429 - putative glycosyl transferase putative regulator gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2102 N840_2103 N840_2103 wzc wzc 2137522 2139684 - protein-tyrosine kinase gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2103 N840_2104 N840_2104 wzb wzb 2139687 2140130 - protein-tyrosine phosphatase low molecular weight protein-tyrosine-phosphatase gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2104 N840_2105 N840_2105 wza wza 2140136 2141275 - lipoprotein required for capsular polysaccharide translocation through the outer membrane putative polysaccharide export protein gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2105 N840_2106 N840_2106 yegH yegH 2141934 2143517 + inner membrane protein putative transport protein gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2106 N840_2107 N840_2107 asmA asmA 2143791 2145644 - putative assembly protein suppressor of ompF assembly mutants gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2107 N840_2108 N840_2108 dcd dcd 2145666 2146247 - 2'-deoxycytidine 5'-triphosphate deaminase gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2108 N840_2109 N840_2109 udk udk 2146339 2146980 - uridine/cytidine kinase gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2109 N840_2110 N840_2110 yegE yegE 2147298 2150615 + putative diguanylate cyclase%2C GGDEF domain signaling protein putative sensor-type protein gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2110 N840_2111 N840_2111 alkA alkA 2150724 2151572 - 3-methyl-adenine DNA glycosylase II 3-methyl-adenine DNA glycosylase II%2C inducible gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2111 N840_2112 N840_2112 yegD yegD 2151706 2153058 + putative chaperone putative heat shock protein gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2112 N840_2113 N840_2113 yegI yegI 2153071 2155017 - yegI putative chaperonin gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2113 N840_2114 N840_2114 yegJ yegJ 2155217 2155678 + yegJ gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2114 N840_2115 N840_2115 yegK yegK 2155743 2156504 - yegK gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2115 N840_2116 N840_2116 yegL yegL 2156501 2157160 - yegL gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2116 N840_2117 N840_2117 sibA sibA 2157341 2157483 + sRNA antisense regulator of toxic IbsA protein identified in a large scale screen gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2117 N840_2118 N840_2118 ibsA ibsA 2157381 2157440 - toxic membrane protein gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2118 N840_2119 N840_2119 sibB sibB 2157676 2157811 + sRNA antisense regulator of toxic IbsB protein identified in a large scale screen gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2119 N840_2120 N840_2120 ibsB ibsB 2157713 2157769 - toxic membrane protein gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2120 N840_2121 N840_2121 mdtA mdtA 2158048 2159295 + multidrug efflux system%2C subunit A putative membrane protein gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2121 N840_2122 N840_2122 mdtB mdtB 2159295 2162417 + multidrug efflux system%2C subunit B gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2122 N840_2123 N840_2123 mdtC mdtC 2162418 2165495 + multidrug efflux system%2C subunit C gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2123 N840_2124 N840_2124 mdtD mdtD 2165496 2166911 + putative arabinose efflux transporter putative transport protein gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2124 N840_2125 N840_2125 baeS baeS 2166908 2168311 + sensory histidine kinase in two-component regulatory system with BaeR sensor protein (for BaeR) gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2125 N840_2126 N840_2126 baeR baeR 2168308 2169030 + DNA-binding response regulator in two-component regulatory system with BaeS transcriptional response regulatory protein (sensor BaeS) gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2126 N840_2127 N840_2127 yegP yegP 2169221 2169553 + conserved protein%2C UPF0339 family gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2127 N840_2128 N840_2128 yegQ yegQ 2169700 2171061 + putative peptidase gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2128 N840_2129 N840_2129 cyaR cyaR 2171146 2171232 + sRNA antisense regulator of ompX mRNA instability%2C Hfq-dependent%2C cAMP-induced identified in a large scale screen gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2129 N840_2130 N840_2130 ogrK ogrK 2171334 2171552 - positive regulator of P2 growth (insertion of P2 ogr gene into the chromosome) prophage P2 ogr protein gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2130 N840_2131 N840_2131 yegZ yegZ 2171634 2171846 - pseudogene%2C gpD phage P2-like protein D%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2131 N840_2132 N840_2132 yegR yegR 2172021 2172338 - yegR gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2132 N840_2133 N840_2133 yegS yegS 2172744 2173643 + phosphatidylglycerol kinase%2C metal-dependent gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2133 N840_2134 N840_2134 gatR gatR 2173725 2175759 - pseudogene%2C repressor for gat operon%3B split galactitol utilization operon repressor%2C fragment 2%3B split galactitol utilization operon repressor%2C interrupted%3B interrupted by IS3 pseudogene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2134 N840_2135 N840_2135 insE1 insE1 2174268 2174567 + IS3 transposase A gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2135 N840_2136 N840_2136 insF1 insF1 2174564 2175430 + IS3 transposase B gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2136 N840_2137 N840_2137 gatD gatD 2175865 2176905 - galactitol-1-phosphate dehydrogenase%2C Zn-dependent and NAD(P)-binding protein galactitol-1-phosphate dehydrogenase gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2137 N840_2138 N840_2138 gatC gatC 2176953 2178308 - galactitol-specific enzyme IIC component of PTS PTS system galactitol-specific enzyme IIC gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2138 N840_2139 N840_2139 gatB gatB 2178312 2178596 - galactitol-specific enzyme IIB component of PTS galactitol-specific enzyme IIB of phosphotransferase system gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2139 N840_2140 N840_2140 gatA gatA 2178627 2179079 - galactitol-specific enzyme IIA component of PTS galactitol-specific enzyme IIA of phosphotransferase system gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2140 N840_2141 N840_2141 gatZ gatZ 2179089 2180351 - D-tagatose 1%2C6-bisphosphate aldolase 2%2C subunit putative tagatose 6-phosphate kinase 1 gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2141 N840_2142 N840_2142 gatY gatY 2180380 2181234 - D-tagatose 1%2C6-bisphosphate aldolase 2%2C catalytic subunit tagatose-bisphosphate aldolase 1 gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2142 N840_2143 N840_2143 fbaB fbaB 2181542 2182594 - fructose-bisphosphate aldolase class I gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2143 N840_2144 N840_2144 yegT yegT 2182851 2184128 + nucleoside transporter%2C low affinity putative nucleoside permease protein gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2144 N840_2145 N840_2145 yegU yegU 2184125 2185129 + putative hydrolase gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2145 N840_2146 N840_2146 yegV yegV 2185126 2186091 + putative kinase gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2146 N840_2147 N840_2147 yegW yegW 2186065 2186811 - putative DNA-binding transcriptional regulator putative transcriptional regulator gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2147 N840_2148 N840_2148 yegX yegX 2186863 2187681 - putative hydrolase gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2148 N840_2149 N840_2149 thiD thiD 2187746 2188546 - bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase phosphomethylpyrimidine kinase gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2149 N840_2150 N840_2150 thiM thiM 2188543 2189331 - hydoxyethylthiazole kinase gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2150 N840_2151 N840_2151 rcnR rcnR 2189554 2189826 - DNA-binding transcriptional repressor of rcnA gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2151 N840_2152 N840_2152 rcnA rcnA 2189947 2190771 + membrane protein conferring nickel and cobalt resistance gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2152 N840_2153 N840_2153 rcnB rcnB 2190990 2191328 + periplasmic modulator of Ni and Co efflux gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2153 N840_2154 N840_2154 yehA yehA 2191410 2192444 - putative fimbrial-like adhesin protein putative type-1 fimbrial protein gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2154 N840_2155 N840_2155 yehB yehB 2192460 2194940 - putative outer membrane protein gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2155 N840_2156 N840_2156 yehC yehC 2194956 2195675 - putative periplasmic pilin chaperone putative chaperone gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2156 N840_2157 N840_2157 yehD yehD 2195710 2196252 - putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2157 N840_2158 N840_2158 yehE yehE 2196545 2196826 - yehE gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2158 N840_2159 N840_2159 mrp mrp 2197089 2198198 - antiporter inner membrane protein putative ATPase gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2159 N840_2160 N840_2160 metG metG 2198330 2200363 + methionyl-tRNA synthetase methionine tRNA synthetase gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2160 N840_2161 N840_2161 yehH yehH 2200504 2204299 + pseudogene%3B molybdate metabolism regulator%2C first fragment%3B molybdate metabolism regulator%2C second fragment 2 pseudogene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2161 N840_2162 N840_2162 yehI yehI 2204309 2207940 + putative regulator%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2162 N840_2163 N840_2163 yehK yehK 2208001 2208318 + yehK gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2163 N840_2164 N840_2164 yehL yehL 2208625 2209713 + putative transporter subunit: ATP-binding component of ABC superfamily gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2164 N840_2165 N840_2165 yehM yehM 2209724 2212003 + yehM gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2165 N840_2166 N840_2166 yehP yehP 2211996 2213132 + yehP gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2166 N840_2167 N840_2167 yehQ yehQ 2213129 2215129 + pseudogene pseudogene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2167 N840_2168 N840_2168 yehR yehR 2215254 2215715 + lipoprotein%2C DUF1307 family gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2168 N840_2169 N840_2169 yehS yehS 2215755 2216225 - conserved protein%2C DUF1456 family gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2169 N840_2170 N840_2170 yehT yehT 2216272 2216991 - putative response regulator in two-component system withYehU gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2170 N840_2171 N840_2171 yehU yehU 2216988 2218672 - putative 2-component sensor protein%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2171 N840_2172 N840_2172 mlrA mlrA 2218894 2219625 + DNA-binding transcriptional regulator putative transcriptional regulator gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2172 N840_2173 N840_2173 yohO yohO 2219685 2219792 + yohO gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2173 N840_2174 N840_2174 yehW yehW 2219773 2220504 - putative transporter subunit: membrane component of ABC superfamily putative transport system permease protein gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2174 N840_2175 N840_2175 yehX yehX 2220509 2221435 - putative transporter subunit: ATP-binding component of ABC superfamily putative ATP-binding component of a transport system gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2175 N840_2176 N840_2176 yehY yehY 2221428 2222585 - putative transporter subunit: membrane component of ABC superfamily putative transport system permease protein gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2176 N840_2177 N840_2177 osmF osmF 2222592 2223509 - putative transporter subunit: periplasmic-binding component of ABC superfamily putative transport system permease protein gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2177 N840_2178 N840_2178 bglX bglX 2223720 2226017 - beta-D-glucoside glucohydrolase%2C periplasmic gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2178 N840_2179 N840_2179 dld dld 2226213 2227928 + D-lactate dehydrogenase%2C FAD-binding%2C NADH independent D-lactate dehydrogenase%2C FAD protein%2C NADH independent gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2179 N840_2180 N840_2180 pbpG pbpG 2227966 2228898 - D-alanyl-D-alanine endopeptidase penicillin-binding protein 7 gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2180 N840_2181 N840_2181 yohC yohC 2229072 2229659 - inner membrane protein%2C Yip1 family gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2181 N840_2182 N840_2182 yohD yohD 2229829 2230407 + inner membrane protein%2C DedA family gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2182 N840_2183 N840_2183 yohF yohF 2230537 2231298 - putative oxidoreductase with NAD(P)-binding Rossmann-fold domain putative oxidoreductase gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2183 N840_2184 N840_2184 mdtQ mdtQ 2231351 2232786 - pseudogene%3B putative channel/filament proteins pseudogene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2184 N840_2185 N840_2185 yohP yohP 2233010 2233093 + yohP expressed protein gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2185 N840_2186 N840_2186 dusC dusC 2233466 2234413 - tRNA-dihydrouridine synthase C putative regulator protein gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2186 N840_2187 N840_2187 yohJ yohJ 2234652 2235050 + inner membrane protein%2C UPF0299 family gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2187 N840_2188 N840_2188 yohK yohK 2235047 2235742 + inner membrane protein%2C LrgB family putative seritonin transporter gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2188 N840_2189 N840_2189 cdd cdd 2235872 2236756 + cytidine/deoxycytidine deaminase gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2189 N840_2190 N840_2190 sanA sanA 2236906 2237625 + vancomycin high temperature exclusion protein%3B mutants have a defective envelope more permeable to vancomycin at 42 degrees vancomycin sensitivity gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2190 N840_2191 N840_2191 yeiS yeiS 2237628 2237867 + conserved protein%2C DUF2542 family gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2191 N840_2192 N840_2192 preT preT 2238061 2239299 + dihydropyrimidine dehydrogenase%2C NADH-dependent%2C subunit N putative oxidoreductase gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2192 N840_2193 N840_2193 preA preA 2239293 2240528 + dihydropyrimidine dehydrogenase%2C NADH-dependent%2C subunit C putative oxidoreductase gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2193 N840_2194 N840_2194 mglC mglC 2240771 2241781 - methyl-galactoside transporter subunit methyl-galactoside transport and galactose taxis%3B membrane component of ABC superfamily gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2194 N840_2195 N840_2195 mglA mglA 2241797 2243317 - fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components ATP-binding component of methyl-galactoside transport and galactose taxis gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2195 N840_2196 N840_2196 mglB mglB 2243378 2244376 - methyl-galactoside transporter subunit galactose-binding transport protein%3B receptor for galactose taxis%3B periplasmic-binding component of ABC superfamily gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2196 N840_2197 N840_2197 galS galS 2244656 2245697 - mgl repressor%2C galactose operon inducer%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2197 N840_2198 N840_2198 yeiB yeiB 2245839 2246996 - putative inner membrane protein gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2198 N840_2199 N840_2199 folE folE 2247013 2247681 - GTP cyclohydrolase I gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2199 N840_2200 N840_2200 yeiG yeiG 2247939 2248775 + S-formylglutathione hydrolase putative esterase gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2200 N840_2201 N840_2201 cirA cirA 2248807 2250798 - catecholate siderophore receptor CirA ferric iron outer membrane transporter%2C TonB-dependent%3B surface receptor and translocator for colicin I gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2201 N840_2202 N840_2202 lysP lysP 2251092 2252561 - lysine transporter lysine-specific permease gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2202 N840_2203 N840_2203 yeiE yeiE 2252766 2253647 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2203 N840_2204 N840_2204 yeiH yeiH 2253746 2254795 + inner membrane protein%2C UPF0324 family gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2204 N840_2205 N840_2205 nfo nfo 2254869 2255726 + endonuclease IV with intrinsic 3'-5' exonuclease activity endonuclease IV gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2205 N840_2206 N840_2206 yeiI yeiI 2255729 2256817 + putative kinase gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2206 N840_2207 N840_2207 nupX nupX 2256924 2258174 - nucleoside permease putative pyrimidine nucleoside transporter gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2207 N840_2208 N840_2208 rihB rihB 2258274 2259215 - ribonucleoside hydrolase 2 gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2208 N840_2209 N840_2209 yeiL yeiL 2259384 2260043 + DNA-binding transcriptional activator of stationary phase nitrogen survival stationary phase nitrogen starvation regulator gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2209 N840_2210 N840_2210 psuT psuT 2260114 2261364 - putative nucleoside transporter putative transport system permease protein gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2210 N840_2211 N840_2211 psuG psuG 2261458 2262396 - pseudouridine 5'-phosphate glycosidase gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2211 N840_2212 N840_2212 psuK psuK 2262384 2263325 - pseudouridine kinase putative kinase gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2212 N840_2213 N840_2213 fruA fruA 2263748 2265439 - fused fructose-specific PTS enzymes: IIBcomponent/IIC components PTS system%2C fructose-specific transport protein gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2213 N840_2214 N840_2214 fruK fruK 2265456 2266394 - fructose-1-phosphate kinase gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2214 N840_2215 N840_2215 fruB fruB 2266394 2267524 - fused fructose-specific PTS enzymes: IIA component/HPr component PTS system%2C fructose-specific IIA/fpr component gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2215 N840_2216 N840_2216 setB setB 2267892 2269073 + lactose/glucose efflux system gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2216 N840_2217 N840_2217 yeiW yeiW 2269070 2269324 - UPF0153 cysteine cluster protein%2C function unknown gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2217 N840_2218 N840_2218 yeiP yeiP 2269479 2270051 + elongation factor P-like protein putative elongation factor gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2218 N840_2219 N840_2219 yeiQ yeiQ 2270274 2271740 + putative D-mannonate oxidoreductase%2C NAD-dependent putative oxidoreductase gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2219 N840_2220 N840_2220 yeiR yeiR 2271858 2272844 + Zn-stimulated GTPase involved in zinc homeostasis%3B mutants are cadmium and EDTA sensitive%3B Zn(2+) binding protein gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2220 N840_2221 N840_2221 lpxT lpxT 2272883 2273596 + lipid A 1-diphosphate synthase%3B undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2221 N840_2222 N840_2222 spr spr 2274008 2274574 + mutational suppressor of prc thermosensitivity%2C outer membrane lipoprotein putative lipoprotein gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2222 N840_2223 N840_2223 rtn rtn 2274755 2276311 + resistance protein for phages lambda and N4%2C when overexpressed%2C predicted membrane-anchored cyclic-di-GMP phosphodiesterase gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2223 N840_2224 N840_2224 yejA yejA 2276393 2278207 + microcin C transporter YejABEF%2C periplasmic binding protein%3B ABC family periplasmic-binding component of ABC superfamily gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2224 N840_2225 N840_2225 yejB yejB 2278208 2279302 + microcin C transporter YejABEF%2C permease subunit%3B ABC family putative transport system permease protein%3B membrane component of ABC superfamily gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2225 N840_2226 N840_2226 yejE yejE 2279302 2280327 + microcin C transporter YejABEF%2C permease subunit%3B ABC family putative transport system permease protein%3B membrane component of ABC superfamily gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2226 N840_2227 N840_2227 yejF yejF 2280329 2281918 + microcin C transporter%2C ATP-binding subunit%3B ABC family putative ATP-binding component of a transport system gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2227 N840_2228 N840_2228 yejG yejG 2281922 2282266 - yejG gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2228 N840_2229 N840_2229 bcr bcr 2282599 2283789 - bicyclomycin/cysteine/sulfonamide efflux transporter bicyclomycin resistance protein%3B transmembrane protein gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2229 N840_2230 N840_2230 rsuA rsuA 2283817 2284512 - 16S rRNA pseudouridine(516) synthase 16S pseudouridylate 516 synthase gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2230 N840_2231 N840_2231 yejH yejH 2284661 2286421 + putative ATP-dependent DNA or RNA helicase putative ATP-dependent helicase gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2231 N840_2232 N840_2232 rplY rplY 2286546 2286830 + 50S ribosomal subunit protein L25 gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2232 N840_2233 N840_2233 yejK yejK 2286969 2287976 - spermidine nucleoid-associated protein protein present in spermidine nucleoids gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2233 N840_2234 N840_2234 yejL yejL 2288158 2288385 + conserved protein%2C UPF0352 family gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2234 N840_2235 N840_2235 yejM yejM 2288405 2290165 + putative hydrolase%2C inner membrane putative sulfatase gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2235 N840_2236 N840_2236 proL proL 2290240 2290316 + tRNA-Pro anticodon: GGG tRNA gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2236 N840_2237 N840_2237 yejO yejO 2290419 2294209 - pseudogene%2C autotransporter outer membrane homology%3Bputative transport%3B Not classified%3B putative ATP-binding component of a transport system pseudogene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2237 N840_2238 N840_2238 insH1 insH1 2293094 2294110 - IS5 transposase and trans-activator gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2238 N840_2239 N840_2239 narP narP 2294529 2295176 + DNA-binding response regulator in two-component regulatory system with NarQ or NarX nitrate/nitrite response regulator (sensor NarQ) gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2239 N840_2240 N840_2240 ccmH ccmH 2295387 2296439 - heme lyase%2C CcmH subunit possible subunit of heme lyase gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2240 N840_2241 N840_2241 dsbE dsbE 2296436 2296993 - periplasmic thioredoxin of cytochrome c-type biogenesis gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2241 N840_2242 N840_2242 ccmF ccmF 2296990 2298933 - heme lyase%2C CcmF subunit cytochrome c-type biogenesis protein gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2242 N840_2243 N840_2243 ccmE ccmE 2298930 2299409 - periplasmic heme chaperone cytochrome c biogenesis%2C possible subunit of a heme lyase gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2243 N840_2244 N840_2244 ccmD ccmD 2299406 2299615 - cytochrome c biogenesis protein heme exporter protein C gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2244 N840_2245 N840_2245 ccmC ccmC 2299612 2300349 - heme exporter subunit heme exporter protein C%3B membrane component of ABC superfamily gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2245 N840_2246 N840_2246 ccmB ccmB 2300391 2301053 - heme exporter subunit heme exporter protein B%2C cytochrome c-type biogenesis protein%3B membrane component of ABC superfamily gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2246 N840_2247 N840_2247 ccmA ccmA 2301050 2301673 - heme exporter subunit ATP binding protein of heme exporter A%3B ATP-binding component of ABC superfamily gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2247 N840_2248 N840_2248 napC napC 2301686 2302288 - quinol dehydrogenase%2C electron source for NapAB cytochrome c-type protein gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2248 N840_2249 N840_2249 napB napB 2302298 2302747 - nitrate reductase%2C small%2C cytochrome C550 subunit%2C periplasmic cytochrome c-type protein gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2249 N840_2250 N840_2250 napH napH 2302744 2303607 - ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) ferredoxin-type protein: electron transfer gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2250 N840_2251 N840_2251 napG napG 2303594 2304289 - ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) ferredoxin-type protein: electron transfer gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2251 N840_2252 N840_2252 napA napA 2304296 2306782 - nitrate reductase%2C periplasmic%2C large subunit probable nitrate reductase 3 gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2252 N840_2253 N840_2253 napD napD 2306779 2307042 - assembly protein for periplasmic nitrate reductase gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2253 N840_2254 N840_2254 napF napF 2307032 2307526 - ferredoxin-type protein%2C role in electron transfer to periplasmic nitrate reductase NapA ferredoxin-type protein: electron transfer gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2254 N840_2255 N840_2255 yojO yojO 2307635 2307799 + yojO gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2255 N840_2256 N840_2256 eco eco 2307934 2308422 + ecotin%2C a serine protease inhibitor gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2256 N840_2257 N840_2257 mqo mqo 2309137 2310783 - malate dehydrogenase%2C FAD/NAD(P)-binding domain protein gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2257 N840_2258 N840_2258 yojI yojI 2311001 2312644 - microcin J25 efflux pump%2C TolC-dependent%3B fused ABC transporter permease and ATP-binding components putative ATP-binding component of a transport system gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2258 N840_2259 N840_2259 alkB alkB 2312720 2313370 - oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions DNA repair system specific for alkylated DNA gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2259 N840_2260 N840_2260 ada ada 2313370 2314434 - fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase O6-methylguanine-DNA methyltransferase%3B transcription activator/repressor gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2260 N840_2261 N840_2261 apbE apbE 2314508 2315563 - putative thiamine biosynthesis lipoprotein gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2261 N840_2262 N840_2262 ompC ompC 2315675 2316778 - outer membrane porin protein C outer membrane protein 1b (Ib%3Bc) gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2262 N840_2263 N840_2263 micF micF 2317113 2317205 + sRNA antisense regulator affecting ompF expression%2C Hfq-dependent regulatory antisense RNA affecting ompF expression%3B member of soxRS regulon gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2263 N840_2264 N840_2264 rcsD rcsD 2317517 2320189 + phosphotransfer intermediate protein in two-component regulatory system with RcsBC putative 2-component sensor protein gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2264 N840_2265 N840_2265 rcsB rcsB 2320206 2320856 + DNA-binding response regulator in two-component regulatory system with RcsC and YojN positive response regulator for colanic capsule biosynthesis%2C (sensor%2C RcsC) gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2265 N840_2266 N840_2266 rcsC rcsC 2321056 2323905 - hybrid sensory kinase in two-component regulatory system with RcsB and YojN sensor for ctr capsule biosynthesis%2C probable histidine kinase acting on RcsB gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2266 N840_2267 N840_2267 atoS atoS 2324072 2325898 + sensory histidine kinase in two-component regulatory system with AtoC sensor protein AtoS for response regulator AtoC gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2267 N840_2268 N840_2268 atoC atoC 2325895 2327280 + fused response regulator of ato operon%2C in two-component system with AtoS: response regulator/sigma54 interaction protein response regulator of ato%2C ornithine decarboxylase antizyme (sensor ATOS) gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2268 N840_2269 N840_2269 atoD atoD 2327476 2328138 + acetyl-CoA:acetoacetyl-CoA transferase%2C alpha subunit acetyl-CoA:acetoacetyl-CoA transferase alpha subunit gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2269 N840_2270 N840_2270 atoA atoA 2328138 2328788 + acetyl-CoA:acetoacetyl-CoA transferase%2C beta subunit acetyl-CoA:acetoacetyl-CoA transferase beta subunit gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2270 N840_2271 N840_2271 atoE atoE 2328785 2330107 + short chain fatty acid transporter gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2271 N840_2272 N840_2272 atoB atoB 2330138 2331322 + acetyl-CoA acetyltransferase gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2272 N840_2273 N840_2273 yfaP yfaP 2331396 2332172 - DUF2135 family protein%2C function unknown gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2273 N840_2274 N840_2274 yfaQ yfaQ 2332177 2333826 - tandem DUF2300 domain protein%2C function unknown gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2274 N840_2275 N840_2275 yfaS yfaS 2333827 2338431 - pseudogene%2C UPF0192 family%3B putative membrane protein pseudogene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2275 N840_2276 N840_2276 yfaT yfaT 2338365 2338988 - DUF1175 family protein%2C function unknown gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2276 N840_2277 N840_2277 yfaA yfaA 2338985 2340673 - DUF2138 family protein%2C function unknown gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2277 N840_2278 N840_2278 gyrA gyrA 2340822 2343449 - DNA gyrase (type II topoisomerase)%2C subunit A DNA gyrase%2C subunit A%2C type II topoisomerase gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2278 N840_2279 N840_2279 ubiG ubiG 2343596 2344318 + bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2279 N840_2280 N840_2280 yfaL yfaL 2344446 2348198 - adhesin putative ATP-binding component of a transport system gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2280 N840_2281 N840_2281 nrdA nrdA 2348894 2351179 + ribonucleoside-diphosphate reductase 1%2C alpha subunit ribonucleoside diphosphate reductase 1%2C alpha subunit%2C B1 gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2281 N840_2282 N840_2282 nrdB nrdB 2351413 2352543 + ribonucleoside-diphosphate reductase 1%2C beta subunit%2C ferritin-like protein ribonucleoside-diphosphate reductase 1%2C beta subunit%2C B2 gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2282 N840_2283 N840_2283 yfaE yfaE 2352543 2352797 + ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2283 N840_2284 N840_2284 inaA inaA 2352851 2353501 - conserved protein%2C acid-induced pH-inducible protein involved in stress response gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2284 N840_2285 N840_2285 yfaH yfaH 2353680 2353922 + pseudogene%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2285 N840_2286 N840_2286 glpQ glpQ 2353964 2355040 - periplasmic glycerophosphodiester phosphodiesterase glycerophosphodiester phosphodiesterase%2C periplasmic gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2286 N840_2287 N840_2287 glpT glpT 2355045 2356403 - sn-glycerol-3-phosphate transporter sn-glycerol-3-phosphate permease gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2287 N840_2288 N840_2288 glpA glpA 2356676 2358304 + sn-glycerol-3-phosphate dehydrogenase (anaerobic)%2C large subunit%2C FAD/NAD(P)-binding protein sn-glycerol-3-phosphate dehydrogenase (anaerobic)%2C large subunit gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2288 N840_2289 N840_2289 glpB glpB 2358294 2359553 + sn-glycerol-3-phosphate dehydrogenase (anaerobic)%2C membrane anchor subunit gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2289 N840_2290 N840_2290 glpC glpC 2359550 2360740 + anaerobic sn-glycerol-3-phosphate dehydrogenase%2C C subunit%2C 4Fe-4S iron-sulfur cluster sn-glycerol-3-phosphate dehydrogenase (anaerobic)%2C K-small subunit gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2290 N840_2291 N840_2291 yfaD yfaD 2360933 2361832 + yfaD gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2291 N840_2292 N840_2292 ypaA ypaA 2361845 2362030 + ypaA gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2292 N840_2293 N840_2293 rhmA rhmA 2362071 2362874 - 2-keto-3-deoxy-L-rhamnonate aldolase gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2293 N840_2294 N840_2294 rhmT rhmT 2362892 2364181 - putative L-rhamnonate transporter putative transport protein gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2294 N840_2295 N840_2295 rhmD rhmD 2364238 2365443 - L-rhamnonate dehydratase putative racemase gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2295 N840_2296 N840_2296 rhmR rhmR 2365458 2366240 - putative DNA-binding transcriptional regulator for the rhm operon putative regulator gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2296 N840_2297 N840_2297 yfaY yfaY 2366460 2367662 - yfaY gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2297 N840_2298 N840_2298 yfaZ yfaZ 2367762 2368304 - outer membrane protein%2C possible porin gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2298 N840_2299 N840_2299 nudI nudI 2368583 2369008 + nucleoside triphosphatase gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2299 N840_2300 N840_2300 ais ais 2369047 2369649 - putative LPS core heptose(II)-phosphate phosphatase protein induced by aluminum gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2300 N840_2301 N840_2301 arnB arnB 2369957 2371096 + uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase%2C PLP-dependent putative enzyme gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2301 N840_2302 N840_2302 arnC arnC 2371100 2372068 + undecaprenyl phosphate-L-Ara4FN transferase putative sugar transferase gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2302 N840_2303 N840_2303 arnA arnA 2372068 2374050 + putative transformylase%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2303 N840_2304 N840_2304 arnD arnD 2374047 2374937 + Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2304 N840_2305 N840_2305 arnT arnT 2374937 2376589 + 4-amino-4-deoxy-L-arabinose transferase 4-amino-4-deoxy-L-arabinose transferase (lipid A modification) gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2305 N840_2306 N840_2306 arnE arnE 2376586 2376921 + undecaprenyl phosphate-alpha-L-ara4N exporter%3B flippase ArnEF subunit gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2306 N840_2307 N840_2307 arnF arnF 2376921 2377307 + undecaprenyl phosphate-alpha-L-ara4N exporter%3B flippase ArnEF subunit putative transport/receptor protein gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2307 N840_2308 N840_2308 pmrD pmrD 2377301 2377567 - inactive two-component system connector protein an active Salmonella PmrD ortholog blocks dephosphorylation of PmrA(BasR) by PmrB(BasS) gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2308 N840_2309 N840_2309 menE menE 2377677 2379032 - O-succinylbenzoate-CoA ligase gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2309 N840_2310 N840_2310 menC menC 2379029 2379991 - O-succinylbenzoyl-CoA synthase o-succinylbenzoyl-CoA synthase%3B conversion of chorismate to 2-o-succinylbenzoyl-CoA gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2310 N840_2311 N840_2311 menB menB 2379991 2380848 - dihydroxynaphthoic acid synthetase dihydroxynaphtoic acid synthetase gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2311 N840_2312 N840_2312 menH menH 2380863 2381621 - 2-succinyl-6-hydroxy-2%2C 4-cyclohexadiene-1-carboxylate synthase putative enzyme gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2312 N840_2313 N840_2313 menD menD 2381618 2383288 - bifunctional 2-oxoglutarate decarboxylase/ SHCHC synthase 2-oxoglutarate decarboxylase%3B SHCHC synthase gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2313 N840_2314 N840_2314 menF menF 2383377 2384672 - isochorismate synthase 2 isochorismate hydroxymutase 2%2C menaquinone biosynthesis gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2314 N840_2315 N840_2315 elaB elaB 2384751 2385056 - ribosome-binding protein%2C probably membrane-anchored%2C function unknown gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2315 N840_2316 N840_2316 elaA elaA 2385111 2385572 - putative acyltransferase with acyl-CoA N-acyltransferase domain gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2316 N840_2317 N840_2317 rbn rbn 2385637 2386554 + RNase BN%2C tRNA processing enzyme gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2317 N840_2318 N840_2318 elaD elaD 2386742 2387953 + protease%2C capable of cleaving an AMC-ubiquitin model substrate putative sulfatase / phosphatase gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2318 N840_2319 N840_2319 yfbK yfbK 2388024 2389751 - yfbK gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2319 N840_2320 N840_2320 yfbL yfbL 2389889 2390860 + putative peptidase putative aminopeptidase gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2320 N840_2321 N840_2321 yfbM yfbM 2390963 2391466 + conserved protein%2C DUF1877 family gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2321 N840_2322 N840_2322 yfbN yfbN 2391739 2392455 - yfbN gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2322 N840_2323 N840_2323 yfbO yfbO 2392664 2393086 + yfbO gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2323 N840_2324 N840_2324 yfbP yfbP 2393145 2393993 + TPR-like repeats-containing protein gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2324 N840_2325 N840_2325 nuoN nuoN 2394077 2395534 - NADH:ubiquinone oxidoreductase%2C membrane subunit N NADH dehydrogenase I chain N gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2325 N840_2326 N840_2326 nuoM nuoM 2395541 2397070 - NADH:ubiquinone oxidoreductase%2C membrane subunit M NADH dehydrogenase I chain M gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2326 N840_2327 N840_2327 nuoL nuoL 2397234 2399075 - NADH:ubiquinone oxidoreductase%2C membrane subunit L NADH dehydrogenase I chain L gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2327 N840_2328 N840_2328 nuoK nuoK 2399072 2399374 - NADH:ubiquinone oxidoreductase%2C membrane subunit K NADH dehydrogenase I chain K gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2328 N840_2329 N840_2329 nuoJ nuoJ 2399371 2399925 - NADH:ubiquinone oxidoreductase%2C membrane subunit J NADH dehydrogenase I chain J gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2329 N840_2330 N840_2330 nuoI nuoI 2399937 2400479 - NADH:ubiquinone oxidoreductase%2C chain I NADH dehydrogenase I chain I gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2330 N840_2331 N840_2331 nuoH nuoH 2400494 2401471 - NADH:ubiquinone oxidoreductase%2C membrane subunit H NADH dehydrogenase I chain H gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2331 N840_2332 N840_2332 nuoG nuoG 2401468 2404194 - NADH:ubiquinone oxidoreductase%2C chain G NADH dehydrogenase I chain G gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2332 N840_2333 N840_2333 nuoF nuoF 2404247 2405584 - NADH:ubiquinone oxidoreductase%2C chain F NADH dehydrogenase I chain F gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2333 N840_2334 N840_2334 nuoE nuoE 2405581 2406081 - NADH:ubiquinone oxidoreductase%2C chain E NADH dehydrogenase I chain E gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2334 N840_2335 N840_2335 nuoC nuoC 2406084 2407874 - NADH:ubiquinone oxidoreductase%2C fused CD subunit NADH dehydrogenase I chain C%2C D gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2335 N840_2336 N840_2336 nuoB nuoB 2407980 2408642 - NADH:ubiquinone oxidoreductase%2C chain B NADH dehydrogenase I chain B gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2336 N840_2337 N840_2337 nuoA nuoA 2408658 2409101 - NADH:ubiquinone oxidoreductase%2C membrane subunit A NADH dehydrogenase I chain A gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2337 N840_2338 N840_2338 lrhA lrhA 2409732 2410670 - DNA-binding transcriptional repressor of flagellar%2C motility and chemotaxis genes gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2338 N840_2339 N840_2339 alaA alaA 2411590 2412807 + valine-pyruvate aminotransferase 2 putative aminotransferase gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2339 N840_2340 N840_2340 yfbR yfbR 2412891 2413490 + 5'-nucleotidase putative alpha helix protein gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2340 N840_2341 N840_2341 yfbS yfbS 2413549 2415381 - putative transporter putative transport protein gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2341 N840_2342 N840_2342 yfbT yfbT 2415468 2416118 - sugar phosphatase putative phosphatase gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2342 N840_2343 N840_2343 yfbU yfbU 2416129 2416623 - conserved protein%2C UPF0304 family gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2343 N840_2344 N840_2344 yfbV yfbV 2416706 2417161 - inner membrane protein%2C UPF0208 family gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2344 N840_2345 N840_2345 ackA ackA 2417499 2418701 + acetate kinase A and propionate kinase 2 acetate kinase gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2345 N840_2346 N840_2346 pta pta 2418776 2420920 + phosphate acetyltransferase phosphotransacetylase gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2346 N840_2347 N840_2347 yfcC yfcC 2421110 2422630 + putative inner membrane protein putative S-transferase gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2347 N840_2348 N840_2348 yfcD yfcD 2422663 2423205 - putative NUDIX hydrolase putative regulator gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2348 N840_2349 N840_2349 yfcE yfcE 2423263 2423817 - phosphodiesterase activity on bis-pNPP gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2349 N840_2350 N840_2350 yfcF yfcF 2423870 2424514 - glutathione S-transferase gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2350 N840_2351 N840_2351 yfcG yfcG 2424650 2425297 + GSH-dependent disulfide bond oxidoreductase putative S-transferase gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2351 N840_2352 N840_2352 folX folX 2425354 2425716 + D-erythro-7%2C8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase D-erythro-7%2C8-dihydroneopterin tri P epimerase gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2352 N840_2353 N840_2353 yfcH yfcH 2425737 2426630 + conserved protein with NAD(P)-binding Rossmann-fold domain putative sugar nucleotide epimerase gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2353 N840_2354 N840_2354 yfcI yfcI 2426678 2427568 - yfcI gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2354 N840_2355 N840_2355 hisP hisP 2427765 2428538 - histidine/lysine/arginine/ornithine transporter subunit ATP-binding component of histidine transport gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2355 N840_2356 N840_2356 hisM hisM 2428546 2429262 - histidine/lysine/arginine/ornithine transporter subunit histidine transport%2C membrane protein M%3B membrane component of ABC superfamily gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2356 N840_2357 N840_2357 hisQ hisQ 2429259 2429945 - histidine/lysine/arginine/ornithine transporter permease subunit histidine transport system permease protein%3B membrane component of ABC superfamily gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2357 N840_2358 N840_2358 hisJ hisJ 2430035 2430817 - histidine/lysine/arginine/ornithine transporter subunit histidine-binding periplasmic protein of high-affinity histidine transport system%3B periplasmic-binding component of ABC superfamily gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2358 N840_2359 N840_2359 argT argT 2431038 2431820 - lysine/arginine/ornithine transporter subunit lysine-%2C arginine-%2C ornithine-binding periplasmic protein%3B periplasmic-binding component of ABC superfamily gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2359 N840_2360 N840_2360 ubiX ubiX 2432086 2432655 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2360 N840_2361 N840_2361 purF purF 2432750 2434267 - amidophosphoribosyltransferase amidophosphoribosyltransferase %3D PRPP amidotransferase gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2361 N840_2362 N840_2362 cvpA cvpA 2434304 2434792 - membrane protein required for colicin V production gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2362 N840_2363 N840_2363 dedD dedD 2435051 2435713 - membrane-anchored periplasmic protein involved in septation putative lipoprotein gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2363 N840_2364 N840_2364 folC folC 2435703 2436971 - bifunctional folylpolyglutamate synthase/ dihydrofolate synthase dihydrofolate:folylpolyglutamate synthetase%3B dihydrofolate synthetase gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2364 N840_2365 N840_2365 accD accD 2437041 2437955 - acetyl-CoA carboxylase%2C beta (carboxyltransferase) subunit acetylCoA carboxylase%2C carboxytransferase component%2C beta subunit gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2365 N840_2366 N840_2366 dedA dedA 2438111 2438770 - conserved inner membrane protein gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2366 N840_2367 N840_2367 truA truA 2438853 2439665 - tRNA pseudouridine(38-40) synthase gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2367 N840_2368 N840_2368 usg usg 2439665 2440678 - putative semialdehyde dehydrogenase putative PTS system enzyme II A component gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2368 N840_2369 N840_2369 pdxB pdxB 2440744 2441880 - erythronate-4-phosphate dehydrogenase erythronate-4-phosphate dehyrogenase gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2369 N840_2370 N840_2370 flk flk 2441979 2442974 + putative flagella assembly protein flagellar assembly protein gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2370 N840_2371 N840_2371 yfcJ yfcJ 2442971 2444149 - putative arabinose efflux transporter putative transport protein gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2371 N840_2372 N840_2372 fabB fabB 2444414 2445634 - 3-oxoacyl-[acyl-carrier-protein] synthase I gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2372 N840_2373 N840_2373 mnmC mnmC 2445793 2447799 + fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme putative peptidase gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2373 N840_2374 N840_2374 yfcL yfcL 2447920 2448198 - yfcL gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2374 N840_2375 N840_2375 epmC epmC 2448232 2448780 - Elongation Factor P Lys34 hydroxylase putative transporting ATPase gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2375 N840_2376 N840_2376 yfcA yfcA 2448780 2449589 - inner membrane protein%2C UPF0721 family putative structural protein gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2376 N840_2377 N840_2377 mepA mepA 2449589 2450413 - murein DD-endopeptidase murein DD-endopeptidase%2C penicillin-insensitive gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2377 N840_2378 N840_2378 aroC aroC 2450417 2451502 - chorismate synthase gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2378 N840_2379 N840_2379 prmB prmB 2451537 2452469 - N5-glutamine methyltransferase putative adenine-specific methylase gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2379 N840_2380 N840_2380 smrB smrB 2452635 2453186 + putative DNA endonuclease gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2380 N840_2381 N840_2381 yfcO yfcO 2453257 2454078 - yfcO gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2381 N840_2382 N840_2382 yfcP yfcP 2454080 2454619 - putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2382 N840_2383 N840_2383 yfcQ yfcQ 2454616 2455104 - putative fimbrial-like adhesin protein gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2383 N840_2384 N840_2384 yfcR yfcR 2455101 2455613 - putative fimbrial-like adhesin protein putative fimbrial protein gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2384 N840_2385 N840_2385 yfcS yfcS 2455613 2456365 - putative periplasmic pilus chaperone putative chaperone gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2385 N840_2386 N840_2386 yfcU yfcU 2456385 2459030 - pseudogene%2C export usher homology%3Bputative membrane%3B Not classified%3B putative outer membrane protein pseudogene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2386 N840_2387 N840_2387 yfcV yfcV 2459112 2459675 - putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2387 N840_2388 N840_2388 sixA sixA 2460356 2460841 - phosphohistidine phosphatase gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2388 N840_2389 N840_2389 fadJ fadJ 2461044 2463188 - fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase putative enzyme gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2389 N840_2390 N840_2390 fadI fadI 2463188 2464498 - beta-ketoacyl-CoA thiolase%2C anaerobic%2C subunit putative acyltransferase gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2390 N840_2391 N840_2391 yfcZ yfcZ 2464679 2464963 - conserved protein%2C UPF0381 family gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2391 N840_2392 N840_2392 fadL fadL 2465335 2466675 + long-chain fatty acid outer membrane transporter long-chain fatty acid transport protein (outer membrane flp protein) gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2392 N840_2393 N840_2393 yfdF yfdF 2467040 2468098 + yfdF gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2393 N840_2394 N840_2394 mlaA mlaA 2468280 2469035 - ABC transporter maintaining OM lipid asymmetry%2C OM lipoprotein component lipoprotein precursor gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2394 N840_2395 N840_2395 yfdC yfdC 2469329 2470261 + putative inner membrane protein putative transport protein gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2395 N840_2396 N840_2396 argW argW 2470337 2470411 + tRNA-Arg anticodon: CCU tRNA gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2396 N840_2397 N840_2397 intS intS 2470573 2471730 + CPS-53 (KpLE1) prophage%3B predicted prophage CPS-53 integrase gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2397 N840_2398 N840_2398 gtrA gtrA 2471883 2472245 + CPS-53 (KpLE1) prophage%3B bactoprenol-linked glucose translocase (flippase) gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2398 N840_2399 N840_2399 gtrB gtrB 2472242 2473162 + CPS-53 (KpLE1) prophage%3B bactoprenol glucosyl transferase gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2399 N840_2400 N840_2400 gtrS gtrS 2473159 2474490 + serotype-specific glucosyl transferase%2C CPS-53 (KpLE1) prophage putative ligase gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2400 N840_2401 N840_2401 tfaS tfaS 2474843 2475133 + pseudogene%2C CPS-53 (KpLE1) prophage%3B tail fiber assembly protein fragment%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2401 N840_2402 N840_2402 yfdK yfdK 2475105 2475545 - CPS-53 (KpLE1) prophage%3B conserved protein gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2402 N840_2403 N840_2403 yfdL yfdL 2475572 2476150 - pseudogene%2C CPS-53 (KpLE1) prophage%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2403 N840_2404 N840_2404 yfdM yfdM 2476146 2476415 - CPS-53 (KpLE1) prophage%3B predicted methyltransferase%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2404 N840_2405 N840_2405 yfdN yfdN 2476415 2476909 - CPS-53 (KpLE1) prophage%3B putative protein gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2405 N840_2406 N840_2406 oweS oweS 2476906 2477613 - pseudogene%2C CPS-53 (KpLE1) prophage%3B predicted defective phage replication protein O%3BPhage or Prophage Related%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2406 N840_2407 N840_2407 yfdP yfdP 2477632 2477994 + CPS-53 (KpLE1) prophage%3B putative protein gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2407 N840_2408 N840_2408 yfdQ yfdQ 2478060 2478884 + CPS-53 (KpLE1) prophage%3B putative protein gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2408 N840_2409 N840_2409 yfdR yfdR 2479012 2479548 + CPS-53 (KpLE1) prophage%3B conserved protein gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2409 N840_2410 N840_2410 yfdS yfdS 2479539 2479901 + CPS-53 (KpLE1) prophage%3B putative protein gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2410 N840_2411 N840_2411 yfdT yfdT 2479901 2480206 + CPS-53 (KpLE1) prophage%3B putative protein gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2411 N840_2412 N840_2412 ypdJ ypdJ 2480209 2480259 + exisonase remnant%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2412 N840_2413 N840_2413 torI torI 2480338 2480538 + response regulator inhibitor for tor operon gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2413 N840_2414 N840_2414 pawZ pawZ 2480612 2480626 + tRNA-OTHER pseudogenic_tRNA gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2414 N840_2415 N840_2415 dsdC dsdC 2480722 2481657 - DNA-binding transcriptional dual regulator D-serine dehydratase (deaminase) transcriptional activator gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2415 N840_2416 N840_2416 dsdX dsdX 2481875 2483212 + D-serine permease transport system permease (serine?) gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2416 N840_2417 N840_2417 dsdA dsdA 2483230 2484558 + D-serine dehydratase D-serine dehydratase (deaminase) gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2417 N840_2418 N840_2418 emrY emrY 2484666 2486204 - putative multidrug efflux system multidrug resistance protein Y gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2418 N840_2419 N840_2419 emrK emrK 2486204 2487367 - EmrKY-TolC multidrug resistance efflux pump%2C membrane fusion protein component multidrug resistance protein K gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2419 N840_2420 N840_2420 evgA evgA 2487783 2488397 + DNA-binding response regulator in two-component regulatory system with EvgS putative positive transcription regulator (sensor EvgS) gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2420 N840_2421 N840_2421 evgS evgS 2488402 2491997 + putative sensor for regulator EvgA%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2421 N840_2422 N840_2422 yfdE yfdE 2492053 2493198 - putative CoA-transferase%2C NAD(P)-binding protein putative enzyme gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2422 N840_2423 N840_2423 yfdV yfdV 2493272 2494216 - putative transporter putative receptor protein gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2423 N840_2424 N840_2424 oxc oxc 2494286 2495980 - oxalyl CoA decarboxylase%2C ThDP-dependent gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2424 N840_2425 N840_2425 frc frc 2496034 2497284 - formyl-CoA transferase%2C NAD(P)-binding protein putative enzyme gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2425 N840_2426 N840_2426 yfdX yfdX 2497797 2498432 - yfdX gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2426 N840_2427 N840_2427 ypdI ypdI 2498728 2499003 + putative lipoprotein involved in colanic acid biosynthesis gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2427 N840_2428 N840_2428 yfdY yfdY 2499080 2499322 - putative inner membrane protein gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2428 N840_2429 N840_2429 lpxP lpxP 2499675 2500595 + palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase putative heat shock protein gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2429 N840_2430 N840_2430 ypdK ypdK 2500951 2501022 + expressed protein%2C membrane-associated gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2430 N840_2431 N840_2431 alaC alaC 2501087 2502325 - valine-pyruvate aminotransferase 3 putative aminotransferase gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2431 N840_2432 N840_2432 ypdA ypdA 2502701 2504398 + putative sensory kinase in two-component system with YpdB putative sensor protein gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2432 N840_2433 N840_2433 ypdB ypdB 2504413 2505147 + putative response regulator in two-component system with YpdA putative 2-component transcriptional regulator gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2433 N840_2434 N840_2434 ypdC ypdC 2505160 2506017 + putative DNA-binding protein putative ARAC-type regulatory protein gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2434 N840_2435 N840_2435 fryA fryA 2506020 2508515 - fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component putative PTS system enzyme IIA component%2C enzyme I gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2435 N840_2436 N840_2436 ypdE ypdE 2508540 2509577 - aminopeptidase gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2436 N840_2437 N840_2437 ypdF ypdF 2509577 2510662 - Xaa-Pro aminopeptidase putative peptidase gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2437 N840_2438 N840_2438 fryC fryC 2510677 2511924 - putative enzyme IIC component of PTS gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2438 N840_2439 N840_2439 fryB fryB 2511946 2512272 - putative enzyme IIB component of PTS putative PTS system enzyme IIB component gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2439 N840_2440 N840_2440 glk glk 2512491 2513456 - glucokinase gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2440 N840_2441 N840_2441 yfeO yfeO 2513660 2514916 + putative ion channel protein gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2441 N840_2442 N840_2442 ypeC ypeC 2515031 2515357 + ypeC the overlapping reading frame (b2391) is no longer thought to be an actual gene%2C and has been deaccessioned gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2442 N840_2443 N840_2443 mntH mntH 2515498 2516736 - manganese/divalent cation transporter gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2443 N840_2444 N840_2444 nupC nupC 2517072 2518274 + nucleoside (except guanosine) transporter permease of transport system for 3 nucleosides gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2444 N840_2445 N840_2445 insL1 insL1 2518361 2519473 + IS186 transposase gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2445 N840_2446 N840_2446 yfeA yfeA 2519673 2521862 - putative diguanylate cyclase gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2446 N840_2447 N840_2447 alaX alaX 2522071 2522146 - tRNA-Ala anticodon: GGC tRNA gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2447 N840_2448 N840_2448 alaW alaW 2522186 2522261 - tRNA-Ala anticodon: GGC tRNA gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2448 N840_2449 N840_2449 yfeC yfeC 2522497 2522841 + putative DNA-binding protein%2C DUF1323 family gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2449 N840_2450 N840_2450 yfeD yfeD 2522843 2523235 + conserved protein%2C DUF1323 family%3B N-terminal HTH domain of the MerR superfamily gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2450 N840_2451 N840_2451 gltX gltX 2523287 2524702 - glutamyl-tRNA synthetase glutamate tRNA synthetase%2C catalytic subunit gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2451 N840_2452 N840_2452 valU valU 2524961 2525036 + tRNA-Val anticodon: UAC tRNA gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2452 N840_2453 N840_2453 valX valX 2525081 2525156 + tRNA-Val anticodon: UAC tRNA gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2453 N840_2454 N840_2454 valY valY 2525203 2525278 + tRNA-Val anticodon: UAC tRNA gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2454 N840_2455 N840_2455 lysV lysV 2525283 2525358 + tRNA-Lys anticodon: UUU tRNA gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2455 N840_2456 N840_2456 xapR xapR 2525623 2526507 - DNA-binding transcriptional activator for for xapAB regulator for xapA gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2456 N840_2457 N840_2457 xapB xapB 2526759 2528015 - xanthosine transporter xanthosine permease gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2457 N840_2458 N840_2458 xapA xapA 2528075 2528908 - purine nucleoside phosphorylase II xanthosine phosphorylase gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2458 N840_2459 N840_2459 yfeN yfeN 2529157 2529921 + putative outer membrane protein putative sugar hydrolase gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2459 N840_2460 N840_2460 yfeR yfeR 2529951 2530877 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2460 N840_2461 N840_2461 yfeH yfeH 2530967 2531965 + putative inner membrane protein putative cytochrome oxidase gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2461 N840_2462 N840_2462 ypeB ypeB 2531962 2532180 - ypeB gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2462 N840_2463 N840_2463 ligA ligA 2532182 2534197 - DNA ligase%2C NAD(+)-dependent DNA ligase gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2463 N840_2464 N840_2464 zipA zipA 2534268 2535254 - FtsZ stabilizer cell division protein involved in FtsZ ring gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2464 N840_2465 N840_2465 cysZ cysZ 2535484 2536245 + putative inner membrane protein required for sulfate transport gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2465 N840_2466 N840_2466 cysK cysK 2536430 2537401 + cysteine synthase A%2C O-acetylserine sulfhydrolase A subunit cysteine synthase A%2C O-acetylserine sulfhydrolase A gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2466 N840_2467 N840_2467 ptsH ptsH 2537785 2538042 + phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) PTS system protein HPr gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2467 N840_2468 N840_2468 ptsI ptsI 2538087 2539814 + PEP-protein phosphotransferase of PTS system (enzyme I) PEP-protein phosphotransferase system enzyme I gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2468 N840_2469 N840_2469 crr crr 2539855 2540364 + glucose-specific enzyme IIA component of PTS PTS system%2C glucose-specific IIA component gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2469 N840_2470 N840_2470 pdxK pdxK 2540407 2541258 - pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase pyridoxal/pyridoxine/pyridoxamine kinase gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2470 N840_2471 N840_2471 yfeK yfeK 2541363 2541737 + yfeK gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2471 N840_2472 N840_2472 yfeS yfeS 2541770 2542504 + yfeS gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2472 N840_2473 N840_2473 cysM cysM 2542693 2543604 - cysteine synthase B (O-acetylserine sulfhydrolase B) cysteine synthase B%2C O-acetylserine sulfhydrolase B gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2473 N840_2474 N840_2474 cysA cysA 2543738 2544835 - sulfate/thiosulfate transporter subunit ATP-binding component of sulfate permease A protein%3B chromate resistance%3B ATP-binding component of ABC superfamily gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2474 N840_2475 N840_2475 cysW cysW 2544825 2545700 - sulfate/thiosulfate ABC transporter subunit sulfate transport system permease W protein%3B membrane component of ABC superfamily gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2475 N840_2476 N840_2476 cysU cysU 2545700 2546533 - sulfate/thiosulfate ABC transporter permease sulfate%2C thiosulfate transport system permease T protein%3B membrane component of ABC superfamily gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2476 N840_2477 N840_2477 cysP cysP 2546533 2547549 - thiosulfate-binding protein thiosulfate binding protein%3B periplasmic-binding component of ABC superfamily gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2477 N840_2478 N840_2478 ucpA ucpA 2547853 2548644 - furfural resistance protein%2C predicted short-chain oxidoreductase putative oxidoreductase gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2478 N840_2479 N840_2479 murR murR 2548773 2549630 - repressor for murPQ%2C MurNAc 6-P inducible gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2479 N840_2480 N840_2480 murQ murQ 2549794 2550690 + N-acetylmuramic acid 6-phosphate (MurNAc-6-P) etherase putative regulator gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2480 N840_2481 N840_2481 murP murP 2550694 2552118 + N-acetylmuramic acid permease%2C EIIBC component%2C PTS system gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2481 N840_2482 N840_2482 yfeW yfeW 2552123 2553427 + penicillin binding protein PBP4B%3B weak DD-carboxypeptidase activity putative beta-lactamase gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2482 N840_2483 N840_2483 yfeX yfeX 2553667 2554566 - porphyrinogen oxidase%2C cytoplasmic gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2483 N840_2484 N840_2484 yfeY yfeY 2554662 2555237 - RpoE-regulated lipoprotein gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2484 N840_2485 N840_2485 yfeZ yfeZ 2555298 2555747 - inner membrane protein gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2485 N840_2486 N840_2486 ypeA ypeA 2555734 2556159 - putative acyltransferase with acyl-CoA N-acyltransferase domain gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2486 N840_2487 N840_2487 amiA amiA 2556373 2557242 + N-acetylmuramoyl-l-alanine amidase I gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2487 N840_2488 N840_2488 hemF hemF 2557246 2558145 + coproporphyrinogen III oxidase gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2488 N840_2489 N840_2489 eutR eutR 2558151 2559203 - eut operon transcriptional activator%2C AraC family putative ARAC-type regulatory protein gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2489 N840_2490 N840_2490 eutK eutK 2559249 2559749 - putative carboxysome structural protein with predicted role in ethanolamine utilization gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2490 N840_2491 N840_2491 eutL eutL 2559762 2560421 - putative carboxysome structural protein with predicted role in ethanolamine utilization gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2491 N840_2492 N840_2492 eutC eutC 2560431 2561318 - ethanolamine ammonia-lyase%2C small subunit (light chain) ethanolamine ammonia-lyase%2C light chain gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2492 N840_2493 N840_2493 eutB eutB 2561339 2562700 - ethanolamine ammonia-lyase%2C large subunit%2C heavy chain ethanolamine ammonia-lyase%2C heavy chain gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2493 N840_2494 N840_2494 intZ intZ 2562879 2564087 + CPZ-55 prophage%3B predicted integrase putative prophage integrase gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2494 N840_2495 N840_2495 yffL yffL 2564278 2564919 + CPZ-55 prophage%3B putative protein gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2495 N840_2496 N840_2496 yffM yffM 2565389 2565634 + CPZ-55 prophage%3B putative protein gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2496 N840_2497 N840_2497 yffN yffN 2565646 2566014 + CPZ-55 prophage%3B putative protein gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2497 N840_2498 N840_2498 yffO yffO 2566132 2566548 + CPZ-55 prophage%3B putative protein gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2498 N840_2499 N840_2499 yffP yffP 2566545 2567138 + CPZ-55 prophage%3B putative protein gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2499 N840_2500 N840_2500 yffQ yffQ 2567613 2567990 + CPZ-55 prophage%3B putative protein gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2500 N840_2501 N840_2501 yffR yffR 2568001 2568393 + CPZ-55 prophage%3B putative protein gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2501 N840_2502 N840_2502 yffS yffS 2568544 2569353 + CPZ-55 prophage%3B putative protein gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2502 N840_2503 N840_2503 eutA eutA 2569502 2570905 - reactivating factor for ethanolamine ammonia lyase gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2503 N840_2504 N840_2504 eutH eutH 2570902 2572128 - ethanolamine transporter ethanolamine utilization%3B homolog of Salmonella putative transport protein gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2504 N840_2505 N840_2505 eutG eutG 2572345 2573532 - ethanol dehydrogenase involved in ethanolamine utilization%3B aldehyde reductase%2C converts acetaldehyde to ethanol ethanolamine utilization%3B homolog of Salmonella enzyme%2C similar to iron-containing alcohol dehydrogenase gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2505 N840_2506 N840_2506 eutJ eutJ 2573522 2574358 - putative chaperonin%2C ethanolamine utilization protein ethanolamine utilization%3B homolog of Salmonella gene gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2506 N840_2507 N840_2507 eutE eutE 2574369 2575772 - aldehyde oxidoreductase%2C ethanolamine utilization protein ethanolamine utilization%3B similar to acetaldehyde dehydrogenase gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2507 N840_2508 N840_2508 eutN eutN 2575784 2576071 - Ethanolamine catabolic microcompartment shell protein detox protein gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2508 N840_2509 N840_2509 eutM eutM 2576178 2576471 - putative carboxysome structural protein%2C ethanolamine utilization protein detox protein gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2509 N840_2510 N840_2510 eutD eutD 2576510 2577526 - phosphate acetyltransferase ethanolamine utilization%3B homolog of Salmonella acetyl/butyryl P transferase gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2510 N840_2511 N840_2511 eutT eutT 2577523 2578326 - cobalamin adenosyltransferase involved in ethanolamine utilization gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2511 N840_2512 N840_2512 eutQ eutQ 2578323 2579024 - eutQ gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2512 N840_2513 N840_2513 eutP eutP 2578999 2579478 - conserved protein with nucleoside triphosphate hydrolase domain gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2513 N840_2514 N840_2514 eutS eutS 2579491 2579826 - putative carboxysome structural protein with predicted role in ethanol utilization gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2514 N840_2515 N840_2515 maeB maeB 2580119 2582398 - fused malic enzyme predicted oxidoreductase/predicted phosphotransacetylase putative multimodular enzyme gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2515 N840_2516 N840_2516 talA talA 2582687 2583637 + transaldolase A gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2516 N840_2517 N840_2517 tktB tktB 2583657 2585660 + transketolase 2%2C thiamin-binding protein transketolase 2 isozyme gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2517 N840_2518 N840_2518 ypfG ypfG 2585755 2586798 - ypfG gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2518 N840_2519 N840_2519 nudK nudK 2586924 2587499 - GDP-mannose pyrophosphatase gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2519 N840_2520 N840_2520 aegA aegA 2587567 2589546 - fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2520 N840_2521 N840_2521 narQ narQ 2589752 2591452 + sensory histidine kinase in two-component regulatory system with NarP (NarL) sensor for nitrate reductase system%2C protein histidine kinase (acts on NarP and narL) gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2521 N840_2522 N840_2522 acrD acrD 2591616 2594729 + aminoglycoside/multidrug efflux system gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2522 N840_2523 N840_2523 ypfM ypfM 2594828 2594887 - ypfM gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2523 N840_2524 N840_2524 yffB yffB 2595268 2595624 + putative reductase%2C function unknown%2C ArsC family%3B low abundance protein gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2524 N840_2525 N840_2525 dapE dapE 2595628 2596755 + N-succinyl-diaminopimelate deacylase gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2525 N840_2526 N840_2526 ypfN ypfN 2596783 2596983 + putative membrane protein%2C UPF0370 family gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2526 N840_2527 N840_2527 ypfH ypfH 2597093 2597791 - putative hydrolase gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2527 N840_2528 N840_2528 tmcA tmcA 2597865 2599880 - elongator methionine tRNA (ac4C34) acetyltransferase gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2528 N840_2529 N840_2529 ypfJ ypfJ 2599895 2600758 - ypfJ gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2529 N840_2530 N840_2530 purC purC 2600926 2601639 - phosphoribosylaminoimidazole-succinocarboxamide synthetase phosphoribosylaminoimidazole-succinocarboxamide synthetase %3D SAICAR synthetase gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2530 N840_2531 N840_2531 bamC bamC 2601852 2602886 - lipoprotein required for OM biogenesis%2C in BamABCDE complex lipoprotein-34 gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2531 N840_2532 N840_2532 dapA dapA 2602903 2603781 - dihydrodipicolinate synthase gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2532 N840_2533 N840_2533 gcvR gcvR 2603927 2604499 + DNA-binding transcriptional repressor%2C regulatory protein accessory to GcvA transcriptional regulation of gcv operon gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2533 N840_2534 N840_2534 bcp bcp 2604499 2604970 + bacterioferritin comigratory protein%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2534 N840_2535 N840_2535 hyfA hyfA 2605223 2605840 + hydrogenase 4%2C 4Fe-4S subunit hydrogenase 4 Fe-S subunit gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2535 N840_2536 N840_2536 hyfB hyfB 2605840 2607858 + hydrogenase 4%2C membrane subunit hydrogenase 4 membrane subunit gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2536 N840_2537 N840_2537 hyfC hyfC 2607869 2608816 + hydrogenase 4%2C membrane subunit hydrogenase 4 membrane subunit gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2537 N840_2538 N840_2538 hyfD hyfD 2608833 2610272 + hydrogenase 4%2C membrane subunit hydrogenase 4 membrane subunit gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2538 N840_2539 N840_2539 hyfE hyfE 2610284 2610934 + hydrogenase 4%2C membrane subunit hydrogenase 4 membrane subunit gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2539 N840_2540 N840_2540 hyfF hyfF 2610939 2612519 + hydrogenase 4%2C membrane subunit hydrogenase 4 membrane subunit gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2540 N840_2541 N840_2541 hyfG hyfG 2612509 2614176 + hydrogenase 4%2C subunit hydrogenase 4 subunit gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2541 N840_2542 N840_2542 hyfH hyfH 2614186 2614731 + hydrogenase 4%2C Fe-S subunit hydrogenase 4 Fe-S subunit gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2542 N840_2543 N840_2543 hyfI hyfI 2614728 2615486 + hydrogenase 4%2C Fe-S subunit hydrogenase 4 Fe-S subunit gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2543 N840_2544 N840_2544 hyfJ hyfJ 2615479 2615892 + putative processing element hydrogenase 4 gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2544 N840_2545 N840_2545 hyfR hyfR 2615922 2617934 + DNA-binding transcriptional activator%2C formate sensing putative 2-component regulator%2C interaction with sigma 54 gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2545 N840_2546 N840_2546 focB focB 2617956 2618802 + probable formate transporter (formate channel 2)%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2546 N840_2547 N840_2547 yfgO yfgO 2618840 2619901 - putative inner membrane permease%2C UPF0118 family putative permease gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2547 N840_2548 N840_2548 yfgC yfgC 2620114 2621577 + periplasmic predicted metalloprotease%2C required for LoiP localization%3B TPR repeats gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2548 N840_2549 N840_2549 yfgD yfgD 2621598 2621957 + putative oxidoreductase gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2549 N840_2550 N840_2550 hda hda 2622095 2622796 - ATPase regulatory factor involved in DnaA inactivation putative DNA replication factor gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2550 N840_2551 N840_2551 uraA uraA 2622891 2624180 - uracil permease uracil transport gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2551 N840_2552 N840_2552 upp upp 2624266 2624892 - uracil phosphoribosyltransferase gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2552 N840_2553 N840_2553 purM purM 2625217 2626254 + phosphoribosylaminoimidazole synthetase phosphoribosylaminoimidazole synthetase %3D AIR synthetase gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2553 N840_2554 N840_2554 purN purN 2626254 2626892 + phosphoribosylglycinamide formyltransferase 1 gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2554 N840_2555 N840_2555 ppk ppk 2627064 2629130 + polyphosphate kinase%2C component of RNA degradosome polyphosphate kinase gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2555 N840_2556 N840_2556 ppx ppx 2629135 2630676 + exopolyphosphatase gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2556 N840_2557 N840_2557 yfgF yfgF 2630715 2632958 - cyclic-di-GMP phosphodiesterase%2C anaerobic putative cytochrome C-type biogenesis protein gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2557 N840_2558 N840_2558 yfgG yfgG 2633310 2633501 + yfgG gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2558 N840_2559 N840_2559 yfgH yfgH 2633812 2634330 + outer membrane integrity lipoprotein putative outer membrane lipoprotein gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2559 N840_2560 N840_2560 yfgI yfgI 2634346 2634885 + yfgI putative membrane protein gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2560 N840_2561 N840_2561 guaA guaA 2634978 2636555 - GMP synthetase (glutamine aminotransferase) GMP synthetase (glutamine-hydrolyzing) gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2561 N840_2562 N840_2562 guaB guaB 2636624 2638090 - IMP dehydrogenase gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2562 N840_2563 N840_2563 xseA xseA 2638252 2639622 + exonuclease VII%2C large subunit gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2563 N840_2564 N840_2564 yfgJ yfgJ 2639619 2639834 - conserved protein%2C DUF1407 family gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2564 N840_2565 N840_2565 der der 2639904 2641376 - GTPase%3B multicopy suppressor of ftsJ putative GTP-binding factor gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2565 N840_2566 N840_2566 bamB bamB 2641494 2642672 - lipoprotein required for OM biogenesis%2C in BamABCDE complex putative dehydrogenase gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2566 N840_2567 N840_2567 yfgM yfgM 2642683 2643303 - conserved protein%2C UPF0070 family gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2567 N840_2568 N840_2568 hisS hisS 2643321 2644595 - histidyl tRNA synthetase histidine tRNA synthetase gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2568 N840_2569 N840_2569 ispG ispG 2644706 2645824 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2569 N840_2570 N840_2570 rodZ rodZ 2645851 2646864 - cytoskeletal protein required for MreB assembly putative membrane protein gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2570 N840_2571 N840_2571 rlmN rlmN 2647149 2648303 - dual specificity 23S rRNA m(2)A2503%2C tRNA m(2)A37 methyltransferase%2C SAM-dependent gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2571 N840_2572 N840_2572 ndk ndk 2648453 2648884 - multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase nucleoside diphosphate kinase gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2572 N840_2573 N840_2573 pbpC pbpC 2649033 2651345 - penicillin-binding protein PBP1C murein transglycosylase penicillin binding protein 1C (PBP 1C) gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2573 N840_2574 N840_2574 yfhM yfhM 2651346 2656307 - yfhM gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2574 N840_2575 N840_2575 sseA sseA 2656514 2657359 + 3-mercaptopyruvate sulfurtransferase putative thiosulfate sulfurtransferase gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2575 N840_2576 N840_2576 ryfA ryfA 2657875 2658178 + novel sRNA%2C function unknown identified in a large scale screen ncRNA gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2576 N840_2577 N840_2577 sseB sseB 2658177 2658953 - rhodanase-like enzyme%2C sulfur transfer from thiosulfate enhanced serine sensitivity gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2577 N840_2578 N840_2578 pepB pepB 2659095 2660378 - aminopeptidase B putative peptidase gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2578 N840_2579 N840_2579 iscX iscX 2660556 2660756 - Iron binding protein associated with IscS%3B putative molecular adaptor of IscS function gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2579 N840_2580 N840_2580 fdx fdx 2660768 2661103 - [2Fe-2S] ferredoxin [2FE-2S] ferredoxin%2C electron carrer protein gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2580 N840_2581 N840_2581 hscA hscA 2661105 2662955 - DnaK-like molecular chaperone specific for IscU DnaK-homologue chaperone Hsc66 gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2581 N840_2582 N840_2582 hscB hscB 2662972 2663487 - DnaJ-like molecular chaperone specific for IscU gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2582 N840_2583 N840_2583 iscA iscA 2663583 2663906 - FeS cluster assembly protein gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2583 N840_2584 N840_2584 iscU iscU 2663923 2664309 - iron-sulfur cluster assembly scaffold protein gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2584 N840_2585 N840_2585 iscS iscS 2664337 2665551 - cysteine desulfurase (tRNA sulfurtransferase)%2C PLP-dependent cysteine desulfurase%3B cysteine desulfurase (tRNA sulfurtransferase) PLP-dependent gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2585 N840_2586 N840_2586 iscR iscR 2665663 2666151 - DNA-binding transcriptional repressor Fe-S cluster-containing transcription factor%3B transcriptional repressor of iscRSUA operon gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2586 N840_2587 N840_2587 trmJ trmJ 2666603 2667343 - tRNA mC32%2CmU32 2'-O-methyltransferase%2C SAM-dependent gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2587 N840_2588 N840_2588 suhB suhB 2667462 2668265 + inositol monophosphatase inositol-1-monophosphatase gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2588 N840_2589 N840_2589 yfhR yfhR 2668410 2669264 + S9 peptidase family protein%2C function unknown putative enzyme (3.4.-) gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2589 N840_2590 N840_2590 csiE csiE 2669455 2670735 + stationary phase inducible protein gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2590 N840_2591 N840_2591 hcaT hcaT 2670727 2671866 - putative 3-phenylpropionic transporter MFS (major facilitator superfamily) transporter gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2591 N840_2592 N840_2592 hcaR hcaR 2672026 2672916 - DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism transcriptional activator of hca cluster gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2592 N840_2593 N840_2593 iroK iroK 2672026 2672091 - 3-hydroxypropionic acid resistance peptide gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2593 N840_2594 N840_2594 hcaE hcaE 2673052 2674413 + 3-phenylpropionate dioxygenase%2C large (alpha) subunit gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2594 N840_2595 N840_2595 hcaF hcaF 2674410 2674928 + 3-phenylpropionate dioxygenase%2C small (beta) subunit small terminal subunit of phenylpropionate dioxygenase gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2595 N840_2596 N840_2596 hcaC hcaC 2674928 2675248 + 3-phenylpropionate dioxygenase%2C predicted ferredoxin subunit ferredoxin subunit of phenylpropionate dioxygenase gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2596 N840_2597 N840_2597 hcaB hcaB 2675245 2676057 + 2%2C3-dihydroxy-2%2C3-dihydrophenylpropionate dehydrogenase gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2597 N840_2598 N840_2598 hcaD hcaD 2676067 2677269 + phenylpropionate dioxygenase%2C ferredoxin reductase subunit ferredoxin reductase subunit of phenylpropionate dioxygenase gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2598 N840_2599 N840_2599 yphA yphA 2677366 2677788 + putative inner membrane protein gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2599 N840_2600 N840_2600 yphB yphB 2677836 2678708 - yphB gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2600 N840_2601 N840_2601 yphC yphC 2678720 2679781 - putative oxidoreductase%2C Zn-dependent and NAD(P)-binding protein putative oxidoreductase gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2601 N840_2602 N840_2602 yphD yphD 2679847 2680845 - putative sugar transporter subunit: membrane component of ABC superfamily putative transport system permease protein gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2602 N840_2603 N840_2603 yphE yphE 2680870 2682381 - fused predicted sugar transporter subunits of ABC superfamily: ATP-binding components putative ATP-binding component of a transport system gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2603 N840_2604 N840_2604 yphF yphF 2682404 2683387 - putative sugar transporter subunit: periplasmic-binding component of ABC superfamily putative LACI-type transcriptional regulator gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2604 N840_2605 N840_2605 yphG yphG 2683484 2686765 - yphG gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2605 N840_2606 N840_2606 yphH yphH 2686883 2688076 + putative DNA-binding transcriptional regulator putative NAGC-like transcriptional regulator gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2606 N840_2607 N840_2607 glyA glyA 2688274 2689527 - serine hydroxymethyltransferase gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2607 N840_2608 N840_2608 hmp hmp 2689855 2691045 + fused nitric oxide dioxygenase/dihydropteridine reductase 2 dihydropteridine reductase%2C ferrisiderophore reductase activity gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2608 N840_2609 N840_2609 glnB glnB 2691090 2691428 - regulatory protein P-II for glutamine synthetase gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2609 N840_2610 N840_2610 glrR glrR 2691489 2692823 - response regulator regulating glmY sRNA in two-component system with sensor protein GlrK putative 2-component transcriptional regulator gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2610 N840_2611 N840_2611 yfhG yfhG 2692813 2693526 - yfhG putative alpha helix protein gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2611 N840_2612 N840_2612 glrK glrK 2693691 2695118 - sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR putative 2-component sensor protein gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2612 N840_2613 N840_2613 glmY glmY 2695177 2695360 - sRNA activator of glmS mRNA%2C glmZ processing antagonist identified in a large scale screen ncRNA gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2613 N840_2614 N840_2614 purL purL 2695676 2699563 - phosphoribosylformyl-glycineamide synthetase phosphoribosylformyl-glycineamide synthetase %3D FGAM synthetase gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2614 N840_2615 N840_2615 mltF mltF 2699821 2701377 + membrane-bound lytic transglycosylase F%2C murein hydrolase putative periplasmic binding transport protein gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2615 N840_2616 N840_2616 tadA tadA 2701374 2701877 - tRNA-specific adenosine deaminase gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2616 N840_2617 N840_2617 pgpC pgpC 2701935 2702570 - pgpC gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2617 N840_2618 N840_2618 yfhH yfhH 2702779 2703627 + putative DNA-binding transcriptional regulator gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2618 N840_2619 N840_2619 yfhL yfhL 2703683 2703943 + putative 4Fe-4S cluster-containing protein gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2619 N840_2620 N840_2620 shoB shoB 2704137 2704217 - toxic membrane protein gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2620 N840_2621 N840_2621 ohsC ohsC 2704540 2704616 + sRNA antisense regulator of shoB toxin gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2621 N840_2622 N840_2622 acpS acpS 2704638 2705018 - holo-[acyl-carrier-protein] synthase 1 CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2622 N840_2623 N840_2623 pdxJ pdxJ 2705018 2705749 - pyridoxine 5'-phosphate synthase pyridoxine biosynthesis gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2623 N840_2624 N840_2624 recO recO 2705761 2706489 - gap repair protein protein interacts with RecR and possibly RecF proteins gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2624 N840_2625 N840_2625 era era 2706501 2707406 - membrane-associated%2C 16S rRNA-binding GTPase GTP-binding protein gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2625 N840_2626 N840_2626 rnc rnc 2707403 2708083 - RNase III RNase III%2C ds RNA gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2626 N840_2627 N840_2627 lepB lepB 2708355 2709329 - leader peptidase (signal peptidase I) gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2627 N840_2628 N840_2628 lepA lepA 2709345 2711144 - back-translocating elongation factor EF4%2C GTPase GTP-binding elongation factor%2C may be inner membrane protein gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2628 N840_2629 N840_2629 rseC rseC 2711342 2711821 - RseC protein involved in reduction of the SoxR iron-sulfur cluster sigma-E factor%2C negative regulatory protein gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2629 N840_2630 N840_2630 rseB rseB 2711818 2712774 - anti-sigma E factor%2C binds RseA regulates activity of sigma-E factor gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2630 N840_2631 N840_2631 rseA rseA 2712774 2713424 - anti-sigma factor sigma-E factor%2C negative regulatory protein gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2631 N840_2632 N840_2632 rpoE rpoE 2713457 2714032 - RNA polymerase%2C sigma 24 (sigma E) factor RNA polymerase%2C sigma-E factor%3B heat shock and oxidative stress gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2632 N840_2633 N840_2633 nadB nadB 2714440 2716062 + quinolinate synthase%2C L-aspartate oxidase (B protein) subunit quinolinate synthetase%2C B protein gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2633 N840_2634 N840_2634 yfiC yfiC 2716047 2716784 - tRNA1(Val) (adenine(37)-N6)-methyltransferase putative enzyme gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2634 N840_2635 N840_2635 srmB srmB 2716916 2718250 + ATP-dependent RNA helicase gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2635 N840_2636 N840_2636 yfiE yfiE 2718459 2719340 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2636 N840_2637 N840_2637 eamB eamB 2719443 2720030 + cysteine and O-acetylserine exporter gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2637 N840_2638 N840_2638 grcA grcA 2720086 2720469 - autonomous glycyl radical cofactor putative formate acetyltransferase gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2638 N840_2639 N840_2639 ung ung 2720774 2721463 + uracil-DNA-glycosylase gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2639 N840_2640 N840_2640 yfiF yfiF 2721511 2722548 - putative methyltransferase gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2640 N840_2641 N840_2641 trxC trxC 2722755 2723174 + thioredoxin 2 putative thioredoxin-like protein gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2641 N840_2642 N840_2642 yfiP yfiP 2723243 2723941 + conserved protein%2C DTW domain protein gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2642 N840_2643 N840_2643 pka pka 2723973 2726633 + protein lysine acetyltransferase gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2643 N840_2644 N840_2644 pssA pssA 2726747 2728102 + phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) phosphatidylserine synthase%3B phospholipid synthesis gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2644 N840_2645 N840_2645 yfiM yfiM 2728148 2728471 + required for high salt suppression of motility%3B probable lipoprotein gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2645 N840_2646 N840_2646 kgtP kgtP 2728468 2729766 - alpha-ketoglutarate transporter alpha-ketoglutarate permease gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2646 N840_2647 N840_2647 rrfG rrfG 2730089 2730208 - 5S ribosomal RNA rRNA gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2647 N840_2648 N840_2648 rrlG rrlG 2730301 2733204 - 23S ribosomal RNA rRNA gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2648 N840_2649 N840_2649 gltW gltW 2733389 2733464 - tRNA-Glu anticodon: UUC tRNA gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2649 N840_2650 N840_2650 rrsG rrsG 2733636 2735177 - 16S ribosomal RNA rRNA gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2650 N840_2651 N840_2651 clpB clpB 2735620 2738193 - protein disaggregation chaperone heat shock protein gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2651 N840_2652 N840_2652 ryfD ryfD 2738173 2738315 - novel sRNA%2C function unknown ncRNA gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2652 N840_2653 N840_2653 yfiH yfiH 2738323 2739054 - conserved protein%2C UPF0124 family gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2653 N840_2654 N840_2654 rluD rluD 2739051 2740031 - 23S rRNA pseudouridine(1911%2C1915%2C1917) synthase gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2654 N840_2655 N840_2655 bamD bamD 2740166 2740903 + lipoprotein required for OM biogenesis%2C in BamABCDE complex gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2655 N840_2656 N840_2656 raiA raiA 2741174 2741515 + cold shock protein associated with 30S ribosomal subunit putative yhbH sigma 54 modulator gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2656 N840_2657 N840_2657 pheL pheL 2741619 2741666 + pheA gene leader peptide leader peptide of chorismate mutase-P-prephenate dehydratase gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2657 N840_2658 N840_2658 pheA pheA 2741765 2742925 + fused chorismate mutase P/prephenate dehydratase chorismate mutase-P and prephenate dehydratase gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2658 N840_2659 N840_2659 tyrA tyrA 2742968 2744089 - fused chorismate mutase T/prephenate dehydrogenase chorismate mutase-T and prephenate dehydrogenase gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2659 N840_2660 N840_2660 aroF aroF 2744100 2745170 - 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase%2C tyrosine-repressible 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase%2C tyrosine repressible) gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2660 N840_2661 N840_2661 yfiL yfiL 2745380 2745745 + lipoprotein gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2661 N840_2662 N840_2662 yfiR yfiR 2745895 2746413 + putative periplasmic inhibitor of YfiN activity gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2662 N840_2663 N840_2663 yfiN yfiN 2746403 2747629 + putative membrane-anchored diguanylate cyclase with an N-terminal periplasmic domain gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2663 N840_2664 N840_2664 yfiB yfiB 2747645 2748127 + putative positive effector of YfiN activity%2C OM lipoprotein putative outer membrane protein gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2664 N840_2665 N840_2665 rplS rplS 2748203 2748550 - 50S ribosomal subunit protein L19 gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2665 N840_2666 N840_2666 trmD trmD 2748592 2749359 - tRNA m(1)G37 methyltransferase%2C SAM-dependent tRNA methyltransferase%3B tRNA (guanine-7-)-methyltransferase gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2666 N840_2667 N840_2667 rimM rimM 2749390 2749938 - 16S rRNA processing protein gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2667 N840_2668 N840_2668 rpsP rpsP 2749957 2750205 - 30S ribosomal subunit protein S16 gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2668 N840_2669 N840_2669 ffh ffh 2750454 2751815 - Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) GTP-binding export factor binds to signal sequence%2C GTP and RNA gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2669 N840_2670 N840_2670 ypjD ypjD 2751982 2752773 + putative inner membrane protein gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2670 N840_2671 N840_2671 yfjD yfjD 2752794 2754080 + inner membrane protein%2C UPF0053 family putative membrane protein gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2671 N840_2672 N840_2672 grpE grpE 2754135 2754728 - heat shock protein phage lambda replication%3B host DNA synthesis%3B heat shock protein%3B protein repair gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2672 N840_2673 N840_2673 nadK nadK 2754851 2755729 + NAD kinase gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2673 N840_2674 N840_2674 recN recN 2755815 2757476 + recombination and repair protein protein used in recombination and DNA repair gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2674 N840_2675 N840_2675 bamE bamE 2757625 2757966 + lipoprotein component of BamABCDE OM biogenesis complex small membrane protein A gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2675 N840_2676 N840_2676 ratB ratB 2758028 2758318 - conserved protein%2C UPF0125 family gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2676 N840_2677 N840_2677 ratA ratA 2758308 2758784 - toxic UPF0083 family protein inhibitor of 70S ribosome formation gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2677 N840_2678 N840_2678 smpB smpB 2758916 2759398 + trans-translation protein small protein B gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2678 N840_2679 N840_2679 ssrA ssrA 2759613 2759975 + tmRNA%2C 10Sa RNA acts as tRNA-Ala and mRNA template for tagging proteins resulting from premature transcription termination for degradation%2C a process known as trans-translation tmRNA gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2679 N840_2680 N840_2680 intA intA 2760179 2761420 + CP4-57 prophage%3B integrase prophage CP4-57 integrase gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2680 N840_2681 N840_2681 yfjH yfjH 2761664 2762620 - CP4-57 prophage%3B putative protein putative histone gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2681 N840_2682 N840_2682 alpA alpA 2762664 2762876 + CP4-57 prophage%3B DNA-binding transcriptional activator prophage CP4-57 regulatory protein alpA gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2682 N840_2683 N840_2683 yfjI yfjI 2763005 2764414 + CP4-57 prophage%3B putative protein gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2683 N840_2684 N840_2684 yfjJ yfjJ 2764567 2765193 + CP4-57 prophage%3B putative protein gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2684 N840_2685 N840_2685 yfjK yfjK 2765371 2767560 - CP4-57 prophage%3B conserved protein gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2685 N840_2686 N840_2686 yfjL yfjL 2767557 2769173 - CP4-57 prophage%3B putative protein gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2686 N840_2687 N840_2687 yfjM yfjM 2769533 2769796 - CP4-57 prophage%3B putative protein gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2687 N840_2688 N840_2688 rnlA rnlA 2769940 2771013 + CP4-57 prophage%3B RNase LS putative cell division protein gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2688 N840_2689 N840_2689 rnlB rnlB 2771006 2771377 + CP4-57 prophage%3B putative protein gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2689 N840_2690 N840_2690 yfjP yfjP 2771733 2772596 + CP4-57 prophage%3B predicted GTP-binding protein putative GTP-binding protein gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2690 N840_2691 N840_2691 yfjQ yfjQ 2772688 2773509 + CP4-57 prophage%3B putative protein gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2691 N840_2692 N840_2692 yfjR yfjR 2773725 2774426 + CP4-57 prophage%3B predicted DNA-binding transcriptional regulator gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2692 N840_2693 N840_2693 ypjK ypjK 2774467 2774703 + CP4-57 prophage%3B predicted inner membrane protein gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2693 N840_2694 N840_2694 yfjS yfjS 2774703 2775146 + CP4-57 prophage%3B putative protein gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2694 N840_2695 N840_2695 yfjT yfjT 2775170 2775637 + CP4-57 prophage%3B putative protein gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2695 N840_2696 N840_2696 yfjU yfjU 2776024 2776176 - CP4-57 prophage%3B conserved protein%3BPhage or Prophage Related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2696 N840_2697 N840_2697 yfjV yfjV 2776189 2777204 - pseudogene%2C CP4-57 prophage%3BPhage or Prophage Related%3B putative pump protein%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2697 N840_2698 N840_2698 yfjW yfjW 2777340 2779043 + CP4-57 prophage%3B predicted inner membrane protein gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2698 N840_2699 N840_2699 ypjI ypjI 2779567 2779838 + pseudogene%2C CP4-57 putative prophage remnant%3BPhage or Prophage Related pseudogene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2699 N840_2700 N840_2700 yfjX yfjX 2779941 2780399 + CP4-57 prophage%3B predicted antirestriction protein gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2700 N840_2701 N840_2701 yfjY yfjY 2780408 2780890 + CP4-57 prophage%3B predicted DNA repair protein putative DNA repair protein gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2701 N840_2702 N840_2702 ypjJ ypjJ 2780899 2781099 + ypjJ gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2702 N840_2703 N840_2703 yfjZ yfjZ 2781137 2781454 + CP4-57 prophage%3B antitoxin of the YpjF-YfjZ toxin-antitoxin system gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2703 N840_2704 N840_2704 ypjF ypjF 2781475 2781804 + CP4-57 prophage%3B toxin of the YpjF-YfjZ toxin-antitoxin system gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2704 N840_2705 N840_2705 psaA psaA 2781994 2782007 + CP4-57 attachment site duplication%2C ssrA pseudogene tmRNA gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2705 N840_2706 N840_2706 ypjA ypjA 2782168 2786748 - adhesin-like autotransporter putative ATP-binding component of a transport system gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2706 N840_2707 N840_2707 pinH pinH 2787087 2787326 - pseudogene%2C predicted invertase fragment%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2707 N840_2708 N840_2708 ypjC ypjC 2787660 2789033 - pseudogene pseudogene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2708 N840_2709 N840_2709 ileY ileY 2789784 2789859 - tRNA-Ile anticodon: GAU tRNA gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2709 N840_2710 N840_2710 ygaQ ygaQ 2790419 2792670 + putative protein%3B putative enzyme%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2710 N840_2711 N840_2711 csiD csiD 2793006 2793983 + carbon starvation protein gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2711 N840_2712 N840_2712 lhgO lhgO 2794003 2795271 + L-2-hydroxyglutarate oxidase gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2712 N840_2713 N840_2713 gabD gabD 2795294 2796742 + succinate-semialdehyde dehydrogenase I%2C NADP-dependent succinate-semialdehyde dehydrogenase%2C NADP-dependent activity gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2713 N840_2714 N840_2714 gabT gabT 2796756 2798036 + 4-aminobutyrate aminotransferase%2C PLP-dependent 4-aminobutyrate aminotransferase activity gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2714 N840_2715 N840_2715 gabP gabP 2798274 2799674 + gamma-aminobutyrate transporter transport permease protein of gamma-aminobutyrate gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2715 N840_2716 N840_2716 csiR csiR 2799695 2800357 + DNA-binding transcriptional repressor of csiD putative transcriptional regulator gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2716 N840_2717 N840_2717 ygaU ygaU 2800358 2800807 - ygaU gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2717 N840_2718 N840_2718 yqaE yqaE 2800891 2801049 - cyaR sRNA-regulated protein gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2718 N840_2719 N840_2719 ygaV ygaV 2801232 2801531 + tributyltin-inducible repressor of ygaVP gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2719 N840_2720 N840_2720 ygaP ygaP 2801541 2802065 + putative inner membrane protein with hydrolase activity gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2720 N840_2721 N840_2721 stpA stpA 2802112 2802516 - DNA binding protein%2C nucleoid-associated DNA-binding protein%3B H-NS-like protein%3B chaperone activity%3B RNA splicing? gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2721 N840_2722 N840_2722 alaE alaE 2803185 2803634 + alanine exporter%2C alanine-inducible%2C stress-responsive gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2722 N840_2723 N840_2723 ygaC ygaC 2803671 2804015 - ygaC gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2723 N840_2724 N840_2724 ygaM ygaM 2804167 2804496 + ribosome-binding protein%2C probably membrane-anchored%2C function unknown gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2724 N840_2725 N840_2725 nrdH nrdH 2804744 2804989 + hydrogen donor for NrdEF electron transport system%3B glutaredoxin-like protein glutaredoxin-like protein%3B hydrogen donor gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2725 N840_2726 N840_2726 nrdI nrdI 2804986 2805396 + flavodoxin required for NrdEF cluster assembly gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2726 N840_2727 N840_2727 nrdE nrdE 2805369 2807513 + ribonucleoside-diphosphate reductase 2%2C alpha subunit gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2727 N840_2728 N840_2728 nrdF nrdF 2807523 2808482 + ribonucleoside-diphosphate reductase 2%2C beta subunit%2C ferritin-like protein ribonucleoside-diphosphate reductase 2%2C beta chain%2C frag gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2728 N840_2729 N840_2729 proV proV 2808836 2810038 + glycine betaine transporter subunit ATP-binding component of transport system for glycine%2C betaine and proline gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2729 N840_2730 N840_2730 proW proW 2810031 2811095 + glycine betaine transporter subunit high-affinity transport system for glycine betaine and proline%3B membrane component of ABC superfamily gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2730 N840_2731 N840_2731 proX proX 2811153 2812145 + glycine betaine transporter subunit high-affinity transport system for glycine betaine and proline%3B periplasmic-binding component of ABC superfamily gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2731 N840_2732 N840_2732 ygaY ygaY 2812337 2813514 + predicted transporter (pseudogene)%3Bputative transport%3B Not classified%3B putative transport protein%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2732 N840_2733 N840_2733 ygaZ ygaZ 2813638 2814375 + putative L-valine exporter%2C norvaline resistance gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2733 N840_2734 N840_2734 ygaH ygaH 2814365 2814700 + putative L-valine exporter%2C norvaline resistance gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2734 N840_2735 N840_2735 mprA mprA 2814791 2815321 + DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux regulator of plasmid mcrB operon (microcin B17 synthesis) gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2735 N840_2736 N840_2736 emrA emrA 2815448 2816620 + multidrug efflux system multidrug resistance secretion protein gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2736 N840_2737 N840_2737 emrB emrB 2816637 2818175 + multidrug efflux system protein multidrug resistance%3B probably membrane translocase gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2737 N840_2738 N840_2738 luxS luxS 2818239 2818754 - S-ribosylhomocysteine lyase gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2738 N840_2739 N840_2739 micA micA 2818823 2818900 + sRNA antisense regulator of ompA%2C lamB%2C ompX%2C and phoP%3B Hfq-dependent identified in a large scale screen gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2739 N840_2740 N840_2740 gshA gshA 2818904 2820460 - glutamate-cysteine ligase gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2740 N840_2741 N840_2741 yqaA yqaA 2820533 2820961 - inner membrane protein%2C COG1238 family gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2741 N840_2742 N840_2742 yqaB yqaB 2820958 2821524 - fructose-1-P and 6-phosphogluconate phosphatase putative phosphatase gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2742 N840_2743 N840_2743 argQ argQ 2821805 2821881 - tRNA-Arg anticodon: ACG tRNA gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2743 N840_2744 N840_2744 argZ argZ 2822080 2822156 - tRNA-Arg anticodon: ACG tRNA gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2744 N840_2745 N840_2745 argY argY 2822219 2822295 - tRNA-Arg anticodon: ACG tRNA gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2745 N840_2746 N840_2746 argV argV 2822494 2822570 - tRNA-Arg anticodon: ACG tRNA gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2746 N840_2747 N840_2747 serV serV 2822574 2822666 - tRNA-Ser anticodon: GCU tRNA gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2747 N840_2748 N840_2748 csrA csrA 2822982 2823167 - pleiotropic regulatory protein for carbon source metabolism carbon storage regulator%3B controls glycogen synthesis%2C gluconeogenesis%2C cell size and surface properties gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2748 N840_2749 N840_2749 alaS alaS 2823402 2826032 - alanyl-tRNA synthetase gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2749 N840_2750 N840_2750 recX recX 2826160 2826660 - regulatory protein for RecA regulator%2C OraA protein gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2750 N840_2751 N840_2751 recA recA 2826729 2827790 - DNA strand exchange and recombination protein with protease and nuclease activity DNA strand exchange and renaturation%2C DNA-dependent ATPase%2C DNA- and ATP-dependent coprotease gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2751 N840_2752 N840_2752 pncC pncC 2827870 2828367 - NMN amidohydrolase gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2752 N840_2753 N840_2753 mltB mltB 2828512 2829596 - Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2753 N840_2754 N840_2754 srlA srlA 2829852 2830415 + glucitol/sorbitol-specific enzyme IIC component of PTS PTS system%2C glucitol/sorbitol-specific IIC component%2C one of two gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2754 N840_2755 N840_2755 srlE srlE 2830412 2831371 + glucitol/sorbitol-specific enzyme IIB component of PTS PTS system%2C glucitol/sorbitol-specific IIB component and second of two IIC components gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2755 N840_2756 N840_2756 srlB srlB 2831382 2831753 + glucitol/sorbitol-specific enzyme IIA component of PTS PTS system%2C glucitol/sorbitol-specific enzyme IIA component gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2756 N840_2757 N840_2757 srlD srlD 2831757 2832536 + sorbitol-6-phosphate dehydrogenase glucitol (sorbitol)-6-phosphate dehydrogenase gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2757 N840_2758 N840_2758 gutM gutM 2832641 2833000 + DNA-binding transcriptional activator of glucitol operon glucitol operon activator gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2758 N840_2759 N840_2759 srlR srlR 2833067 2833840 + DNA-bindng transcriptional repressor regulator for gut (srl)%2C glucitol operon gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2759 N840_2760 N840_2760 gutQ gutQ 2833833 2834798 + D-arabinose 5-phosphate isomerase gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2760 N840_2761 N840_2761 norR norR 2834795 2836309 - anaerobic nitric oxide reductase DNA-binding transcriptional activator putative 2-component transcriptional regulator gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2761 N840_2762 N840_2762 norV norV 2836496 2837935 + anaerobic nitric oxide reductase flavorubredoxin putative flavodoxin gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2762 N840_2763 N840_2763 norW norW 2837932 2839065 + NADH:flavorubredoxin oxidoreductase putative oxidoreductase gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2763 N840_2764 N840_2764 hypF hypF 2839193 2841445 - carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases transcriptional regulatory protein gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2764 N840_2765 N840_2765 hydN hydN 2841598 2842125 - formate dehydrogenase-H%2C [4Fe-4S] ferredoxin subunit involved in electron transport from formate to hydrogen%2C Fe-S centers gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2765 N840_2766 N840_2766 ascG ascG 2842274 2843284 - DNA-binding transcriptional repressor ascBF operon repressor gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2766 N840_2767 N840_2767 ascF ascF 2843544 2845001 + fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component/IC component PTS system enzyme II ABC (asc)%2C cryptic%2C transports specific beta-glucosides gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2767 N840_2768 N840_2768 ascB ascB 2845010 2846434 + cryptic 6-phospho-beta-glucosidase 6-phospho-beta-glucosidase%3B cryptic gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2768 N840_2769 N840_2769 hycI hycI 2846593 2847063 - protease involved in processing C-terminal end of HycE protease involved in processing C-terminal end of the large subunit of hydrogenase 3 gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2769 N840_2770 N840_2770 hycH hycH 2847056 2847466 - protein required for maturation of hydrogenase 3 processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex) gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2770 N840_2771 N840_2771 hycG hycG 2847463 2848230 - hydrogenase 3 and formate hydrogenase complex%2C HycG subunit hydrogenase activity gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2771 N840_2772 N840_2772 hycF hycF 2848230 2848772 - formate hydrogenlyase complex iron-sulfur protein probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2772 N840_2773 N840_2773 hycE hycE 2848782 2850491 - hydrogenase 3%2C large subunit large subunit of hydrogenase 3 (part of FHL complex) gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2773 N840_2774 N840_2774 hycD hycD 2850509 2851432 - hydrogenase 3%2C membrane subunit membrane-spanning protein of hydrogenase 3 (part of FHL complex) gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2774 N840_2775 N840_2775 hycC hycC 2851435 2853261 - hydrogenase 3%2C membrane subunit membrane-spanning protein of hydrogenase 3 (part of FHL complex) gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2775 N840_2776 N840_2776 hycB hycB 2853258 2853869 - hydrogenase 3%2C Fe-S subunit probable small subunit of hydrogenase-3%2C iron-sulfur protein (part of formate hydrogenlyase (FHL) complex) gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2776 N840_2777 N840_2777 hycA hycA 2853994 2854455 - regulator of the transcriptional regulator FhlA transcriptional repression of hyc and hyp operons gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2777 N840_2778 N840_2778 hypA hypA 2854667 2855017 + protein involved in nickel insertion into hydrogenases 3 pleiotrophic effects on 3 hydrogenase isozymes gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2778 N840_2779 N840_2779 hypB hypB 2855021 2855893 + GTP hydrolase involved in nickel liganding into hydrogenases guanine-nucleotide binding protein%2C functions as nickel donor for large subunit of hydrogenase 3 gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2779 N840_2780 N840_2780 hypC hypC 2855884 2856156 + protein required for maturation of hydrogenases 1 and 3 pleiotrophic effects on 3 hydrogenase isozymes gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2780 N840_2781 N840_2781 hypD hypD 2856156 2857277 + protein required for maturation of hydrogenases pleiotrophic effects on 3 hydrogenase isozymes gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2781 N840_2782 N840_2782 hypE hypE 2857274 2858284 + carbamoyl dehydratase%2C hydrogenases 1%2C2%2C3 maturation protein plays structural role in maturation of all 3 hydrogenases gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2782 N840_2783 N840_2783 fhlA fhlA 2858358 2860436 + DNA-binding transcriptional activator formate hydrogen-lyase transcriptional activator for fdhF%2C hyc and hyp operons gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2783 N840_2784 N840_2784 ygbA ygbA 2860473 2860826 - ygbA gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2784 N840_2785 N840_2785 mutS mutS 2861113 2861962 + methyl-directed mismatch repair%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2785 N840_2786 N840_2786 pphB pphB 2862068 2862724 + serine/threonine-specific protein phosphatase 2 protein phosphatase 2 gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2786 N840_2787 N840_2787 ygbI ygbI 2862774 2863541 - putative transcriptional regulator%2C DeoR family putative DEOR-type transcriptional regulator gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2787 N840_2788 N840_2788 ygbJ ygbJ 2863737 2864645 + putative dehydrogenase%2C with NAD(P)-binding Rossmann-fold domain putative dehydrogenase gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2788 N840_2789 N840_2789 ygbK ygbK 2864642 2865808 + ygbK gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2789 N840_2790 N840_2790 ygbL ygbL 2865900 2866538 + putative class II aldolase putative epimerase/aldolase gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2790 N840_2791 N840_2791 ygbM ygbM 2866543 2867319 + ygbM gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2791 N840_2792 N840_2792 ygbN ygbN 2867408 2868772 + putative transporter putative transport protein gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2792 N840_2793 N840_2793 rpoS rpoS 2868866 2869858 - RNA polymerase%2C sigma S (sigma 38) factor RNA polymerase%2C sigma S (sigma38) factor%3B synthesis of many growth phase related proteins gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2793 N840_2794 N840_2794 nlpD nlpD 2869921 2871060 - activator of AmiC murein hydrolase activity%2C lipoprotein lipoprotein gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2794 N840_2795 N840_2795 pcm pcm 2871200 2871826 - L-isoaspartate protein carboxylmethyltransferase type II gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2795 N840_2796 N840_2796 surE surE 2871820 2872581 - broad specificity 5'(3')-nucleotidase and polyphosphatase survival protein gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2796 N840_2797 N840_2797 truD truD 2872562 2873611 - tRNA(Glu) pseudouridine(13) synthase putative hydrogenase subunit gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2797 N840_2798 N840_2798 ispF ispF 2873608 2874087 - 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2798 N840_2799 N840_2799 ispD ispD 2874087 2874797 - 4-diphosphocytidyl-2C-methyl-D-erythritol synthase gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2799 N840_2800 N840_2800 ftsB ftsB 2874816 2875127 - cell division protein gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2800 N840_2801 N840_2801 ygbE ygbE 2875321 2875644 - DUF3561 family inner membrane protein putative cytochrome oxidase subunit gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2801 N840_2802 N840_2802 cysC cysC 2875694 2876299 - adenosine 5'-phosphosulfate kinase gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2802 N840_2803 N840_2803 cysN cysN 2876299 2877726 - sulfate adenylyltransferase%2C subunit 1 ATP-sulfurylase (ATP:sulfate adenylyltransferase)%2C subunit 1%2C probably a GTPase gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2803 N840_2804 N840_2804 cysD cysD 2877728 2878636 - sulfate adenylyltransferase%2C subunit 2 ATP:sulfurylase (ATP:sulfate adenylyltransferase)%2C subunit 2 gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2804 N840_2805 N840_2805 iap iap 2878888 2879925 + aminopeptidase in alkaline phosphatase isozyme conversion gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2805 N840_2806 N840_2806 ygbF ygbF 2880876 2881160 - putative ssRNA endonuclease Cas2%2C CRISPR adaptation protein gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2806 N840_2807 N840_2807 ygbT ygbT 2881162 2882079 - multifunctional endonuclease Cas1%2C CRISPR adaptation protein%3B DNA repair enzyme gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2807 N840_2808 N840_2808 casE casE 2882095 2882694 - CRISPR RNA precursor cleavage enzyme%3B CRISP RNA (crRNA) containing Cascade antiviral complex protein gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2808 N840_2809 N840_2809 casD casD 2882681 2883355 - CRISP RNA (crRNA) containing Cascade antiviral complex protein gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2809 N840_2810 N840_2810 casC casC 2883358 2884449 - CRISP RNA (crRNA) containing Cascade antiviral complex protein gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2810 N840_2811 N840_2811 casB casB 2884462 2884944 - CRISP RNA (crRNA) containing Cascade antiviral complex protein gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2811 N840_2812 N840_2812 casA casA 2884937 2886445 - CRISP RNA (crRNA) containing Cascade antiviral complex protein gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2812 N840_2813 N840_2813 ygcB ygcB 2886860 2889526 - R-loop helicase-annealase Cas3 needed for Cascade anti-viral activity gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2813 N840_2814 N840_2814 sokX sokX 2889661 2889716 + sok-related sRNA%2C function unknown gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2814 N840_2815 N840_2815 cysH cysH 2889885 2890619 - 3'-phosphoadenosine 5'-phosphosulfate reductase gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2815 N840_2816 N840_2816 cysI cysI 2890694 2892406 - sulfite reductase%2C beta subunit%2C NAD(P)-binding%2C heme-binding protein sulfite reductase%2C alpha subunit gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2816 N840_2817 N840_2817 cysJ cysJ 2892406 2894205 - sulfite reductase%2C alpha subunit%2C flavoprotein sulfite reductase (NADPH)%2C flavoprotein beta subunit gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2817 N840_2818 N840_2818 queD queD 2894521 2894886 + 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) putative 6-pyruvoyl tetrahydrobiopterin synthase gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2818 N840_2819 N840_2819 ygcN ygcN 2894964 2896235 + putative oxidoreductase with FAD/NAD(P)-binding domain gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2819 N840_2820 N840_2820 ygcO ygcO 2896226 2896483 + putative 4Fe-4S cluster-containing protein gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2820 N840_2821 N840_2821 ygcP ygcP 2896500 2897075 + putative anti-terminator regulatory protein gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2821 N840_2822 N840_2822 ygcQ ygcQ 2897223 2898083 - putative flavoprotein gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2822 N840_2823 N840_2823 ygcR ygcR 2898080 2898859 - putative flavoprotein putative transport protein gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2823 N840_2824 N840_2824 ygcS ygcS 2898837 2900174 - putative transporter putative transport protein gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2824 N840_2825 N840_2825 ygcU ygcU 2900268 2901722 - putative FAD containing dehydrogenase gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2825 N840_2826 N840_2826 ygcW ygcW 2901792 2902577 - putative dehydrogenase putative oxidoreductase gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2826 N840_2827 N840_2827 yqcE yqcE 2902896 2904173 + inner membrane protein%2C predicted transporter putative transport protein gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2827 N840_2828 N840_2828 ygcE ygcE 2904200 2905678 + putative kinase gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2828 N840_2829 N840_2829 queE queE 2907051 2907722 - 7-carboxy-7-deazaguanine synthase%3B queosine biosynthesis gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2829 N840_2830 N840_2830 yqcG yqcG 2907861 2908001 + yqcG expressed protein gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2830 N840_2831 N840_2831 ygcG ygcG 2908015 2908887 + ygcG gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2831 N840_2832 N840_2832 eno eno 2908947 2910245 - enolase gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2832 N840_2833 N840_2833 pyrG pyrG 2910333 2911970 - CTP synthetase gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2833 N840_2834 N840_2834 mazG mazG 2912198 2912989 - nucleoside triphosphate pyrophosphohydrolase gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2834 N840_2835 N840_2835 mazF mazF 2913060 2913395 - mRNA interferase toxin%2C antitoxin is MazE probable growth inhibitor%2C PemK-like%2C autoregulated gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2835 N840_2836 N840_2836 mazE mazE 2913395 2913643 - antitoxin of the ChpA-ChpR toxin-antitoxin system suppressor of inhibitory function of ChpA%2C PemI-like%2C autoregulated gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2836 N840_2837 N840_2837 relA relA 2913721 2915955 - (p)ppGpp synthetase I/GTP pyrophosphokinase (p)ppGpp synthetase I (GTP pyrophosphokinase)%3B regulation of RNA synthesis%3B stringent factor gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2837 N840_2838 N840_2838 rlmD rlmD 2916003 2917304 - 23S rRNA m(5)U1939 methyltransferase%2C SAM-dependent gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2838 N840_2839 N840_2839 barA barA 2917361 2920117 + hybrid sensory histidine kinase%2C in two-component regulatory system with UvrY sensor-regulator%2C activates OmpR by phophorylation gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2839 N840_2840 N840_2840 gudD gudD 2920349 2921689 - (D)-glucarate dehydratase 1 (D)-glucarate dehydratase 1%3B (L)-idarate dehydratase%3B (L)-idarate epimerase%3B (D)-glucarate epimerase gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2840 N840_2841 N840_2841 gudX gudX 2921710 2923050 - glucarate dehydratase-related protein%2C substrate unknown putative (D)-glucarate dehydratase 2 gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2841 N840_2842 N840_2842 gudP gudP 2923052 2924404 - putative D-glucarate transporter putative D-glucarate permease (MFS family) gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2842 N840_2843 N840_2843 yqcA yqcA 2924839 2925288 - putative flavoprotein gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2843 N840_2844 N840_2844 truC truC 2925306 2926088 - tRNA(Ile1%2CAsp) pseudouridine(65) synthase gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2844 N840_2845 N840_2845 yqcC yqcC 2926088 2926417 - yqcC gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2845 N840_2846 N840_2846 csrB csrB 2926460 2926828 - CsrA-binding sRNA%2C antagonizing CsrA regulation CsrB regulatory RNA%3B binds global regulatory protein CsrA%2C antagonizing CsrA regulation%2C blocking the CsrA binding of glgC mRNA ncRNA gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2846 N840_2847 N840_2847 syd syd 2927039 2927584 - secY-interacting protein interacts with secY gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2847 N840_2848 N840_2848 queF queF 2927652 2928500 + 7-cyano-7-deazaguanine reductase (NADPH-dependent) gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2848 N840_2849 N840_2849 ygdH ygdH 2928612 2929976 + conserved protein%2C UPF0717 family gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2849 N840_2850 N840_2850 sdaC sdaC 2930533 2931822 + putative serine transporter probable serine transporter gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2850 N840_2851 N840_2851 sdaB sdaB 2931880 2933247 + L-serine deaminase II L-serine dehydratase (deaminase)%2C L-SD2 gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2851 N840_2852 N840_2852 ygdG ygdG 2933359 2934114 + Ssb-binding protein%2C misidentified as ExoIX 5'-3' exonuclease gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2852 N840_2853 N840_2853 fucO fucO 2934169 2935317 - L-1%2C2-propanediol oxidoreductase gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2853 N840_2854 N840_2854 fucA fucA 2935345 2935992 - L-fuculose-1-phosphate aldolase gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2854 N840_2855 N840_2855 fucP fucP 2936539 2937855 + L-fucose transporter fucose permease gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2855 N840_2856 N840_2856 fucI fucI 2937888 2939663 + L-fucose isomerase gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2856 N840_2857 N840_2857 fucK fucK 2939742 2941190 + L-fuculokinase gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2857 N840_2858 N840_2858 fucU fucU 2941192 2941614 + L-fucose mutarotase protein of fucose operon gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2858 N840_2859 N840_2859 fucR fucR 2941672 2942403 + DNA-binding transcriptional activator positive regulator of the fuc operon gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2859 N840_2860 N840_2860 rlmM rlmM 2942447 2943547 - 23S rRNA C2498 2'-O-ribose methyltransferase%2C SAM-dependent gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2860 N840_2861 N840_2861 ygdD ygdD 2943540 2943935 - inner membrane protein%2C UPF0382 family gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2861 N840_2862 N840_2862 gcvA gcvA 2943954 2944871 - DNA-binding transcriptional dual regulator positive regulator of gcv operon gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2862 N840_2863 N840_2863 gcvB gcvB 2945000 2945205 + sRNA antisense regulator represses oppA%2C dppA%2C gltI and livJ expression%2C Hfq-dependent regulated by gcvA and gcvR gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2863 N840_2864 N840_2864 ygdI ygdI 2945222 2945449 - putative lipoprotein gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2864 N840_2865 N840_2865 csdA csdA 2945641 2946846 + cysteine sulfinate desulfinase gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2865 N840_2866 N840_2866 csdE csdE 2946846 2947289 + CsdA-binding activator%3B Fe-S protein gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2866 N840_2867 N840_2867 csdL csdL 2947340 2948146 - sulfur acceptor for CsdA putative enzyme gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2867 N840_2868 N840_2868 mltA mltA 2948385 2949482 - membrane-bound lytic murein transglycosylase A gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2868 N840_2869 N840_2869 metZ metZ 2949691 2949767 + tRNA-Met anticodon: CAU tRNA gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2869 N840_2870 N840_2870 metW metW 2949801 2949877 + tRNA-Met anticodon: CAU tRNA gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2870 N840_2871 N840_2871 metV metV 2949911 2949987 + tRNA-Met anticodon: CAU tRNA gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2871 N840_2872 N840_2872 amiC amiC 2950061 2951314 - N-acetylmuramoyl-L-alanine amidase gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2872 N840_2873 N840_2873 argA argA 2951546 2952877 + fused acetylglutamate kinase-like protein (inactive)/amino acid N-acetyltransferase N-acetylglutamate synthase%3B amino acid acetyltransferase gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2873 N840_2874 N840_2874 recD recD 2952939 2954765 - exonuclease V (RecBCD complex)%2C alpha chain DNA helicase%2C ATP-dependent dsDNA/ssDNA exonuclease V subunit%2C ssDNA endonuclease gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2874 N840_2875 N840_2875 recB recB 2954765 2958307 - exonuclease V (RecBCD complex)%2C beta subunit DNA helicase%2C ATP-dependent dsDNA/ssDNA exonuclease V subunit%2C ssDNA endonuclease gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2875 N840_2876 N840_2876 ptrA ptrA 2958300 2961188 - protease III gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2876 N840_2877 N840_2877 recC recC 2961364 2964732 - exonuclease V (RecBCD complex)%2C gamma chain DNA helicase%2C ATP-dependent dsDNA/ssDNA exonuclease V subunit%2C ssDNA endonuclease gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2877 N840_2878 N840_2878 ppdC ppdC 2964745 2965068 - ppdC prepilin peptidase dependent protein C gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2878 N840_2879 N840_2879 ygdB ygdB 2965053 2965460 - conserved protein%2C DUF2509 family gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2879 N840_2880 N840_2880 ppdB ppdB 2965457 2966020 - ppdB prepilin peptidase dependent protein B gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2880 N840_2881 N840_2881 ppdA ppdA 2966011 2966481 - ppdA prepilin peptidase dependent protein A gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2881 N840_2882 N840_2882 thyA thyA 2966665 2967459 - thymidylate synthetase gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2882 N840_2883 N840_2883 lgt lgt 2967466 2968341 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase phosphatidylglycerol-prolipoprotein diacylglyceryl transferase%3B a major membrane phospholipid gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2883 N840_2884 N840_2884 ptsP ptsP 2968492 2970738 - fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein PTS system%2C enzyme I%2C transcriptional regulator (with NPR and NTR proteins) gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2884 N840_2885 N840_2885 rppH rppH 2970751 2971281 - RNA pyrophosphohydrolase putative invasion protein gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2885 N840_2886 N840_2886 mutH mutH 2971966 2972655 + methyl-directed mismatch repair protein methyl-directed mismatch repair gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2886 N840_2887 N840_2887 ygdQ ygdQ 2972724 2973437 + inner membrane protein%2C UPF0053 family putative transport protein gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2887 N840_2888 N840_2888 ygdR ygdR 2973575 2973793 + putative lipoprotein gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2888 N840_2889 N840_2889 tas tas 2973901 2974941 + putative oxidoreductase%2C NADP(H)-dependent aldo-keto reductase%3B suppresses tyrosine requirement of tyrA14 O6 strain gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2889 N840_2890 N840_2890 lplT lplT 2974973 2976166 - lysophospholipid transporter putative resistance proteins gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2890 N840_2891 N840_2891 aas aas 2976159 2978318 - fused 2-acylglycerophospho-ethanolamine acyl transferase/acyl-acyl carrier protein synthetase 2-acyl-glycerophospho-ethanolamine acyltransferase%3B acyl-acyl-carrier protein synthetase gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2891 N840_2892 N840_2892 omrA omrA 2978406 2978493 - sRNA antisense regulator downregulates OM proteins and curli%3B positively regulated by OmpR/EnvZ%2C Hfq-dependent identified in a large scale screen gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2892 N840_2893 N840_2893 omrB omrB 2978608 2978689 - sRNA antisense regulator downregulates OM proteins and curli%3B positively regulated by OmpR/EnvZ%2C Hfq-dependent identified in a large scale screen gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2893 N840_2894 N840_2894 galR galR 2978903 2979934 + DNA-binding transcriptional repressor repressor of galETK operon gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2894 N840_2895 N840_2895 lysA lysA 2979941 2981203 - diaminopimelate decarboxylase%2C PLP-binding protein diaminopimelate decarboxylase gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2895 N840_2896 N840_2896 lysR lysR 2981325 2982260 + DNA-binding transcriptional dual regulator positive regulator for lys gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2896 N840_2897 N840_2897 ygeA ygeA 2982247 2982939 - conserved protein%2C Asp/Glu_racemase family putative resistance proteins gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2897 N840_2898 N840_2898 araE araE 2983068 2984486 - arabinose transporter low-affinity L-arabinose transport system proton symport protein gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2898 N840_2899 N840_2899 kduD kduD 2984801 2985562 - 2-deoxy-D-gluconate 3-dehydrogenase gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2899 N840_2900 N840_2900 kduI kduI 2985592 2986428 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase homolog of pectin degrading enzyme 5-keto 4-deoxyuronate isomerase gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2900 N840_2901 N840_2901 yqeF yqeF 2986715 2987896 - putative acyltransferase gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2901 N840_2902 N840_2902 yqeG yqeG 2988151 2989380 + putative transporter putative transporter protein gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2902 N840_2903 N840_2903 yqeH yqeH 2989840 2990472 + conserved protein with bipartite regulator domain gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2903 N840_2904 N840_2904 yqeI yqeI 2990806 2991615 + putative transcriptional regulator putative sensory transducer gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2904 N840_2905 N840_2905 yqeJ yqeJ 2991608 2992090 + yqeJ gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2905 N840_2906 N840_2906 yqeL yqeL 2992123 2992203 - yqeL expressed protein gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2906 N840_2907 N840_2907 yqeK yqeK 2992239 2992664 - yqeK gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2907 N840_2908 N840_2908 ygeF ygeF 2992858 2993347 + pseudogene pseudogene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2908 N840_2909 N840_2909 ygeG ygeG 2993572 2994063 + putative chaperone gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2909 N840_2910 N840_2910 ygeH ygeH 2994398 2995774 + predictedtranscriptional regulator putative invasion protein gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2910 N840_2911 N840_2911 ygeI ygeI 2995942 2996160 + ygeI gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2911 N840_2912 N840_2912 pbl pbl 2996243 2996745 + predicted peptidoglycan-binding enzyme (pseudogene) pseudogene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2912 N840_2913 N840_2913 ygeK ygeK 2996764 2997396 - pseudogene%3B putative 2-component transcriptional regulator pseudogene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2913 N840_2914 N840_2914 ygeN ygeN 2997619 2998325 - pseudogene pseudogene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2914 N840_2915 N840_2915 ygeO ygeO 2998267 2998665 - pseudogene%2C orgA homolog%2C part of T3SS PAI ETT2 remnant%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2915 N840_2916 N840_2916 insD1 insD1 2998677 2999582 - IS2 transposase TnpB gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2916 N840_2917 N840_2917 insC1 insC1 2999540 2999905 - IS2 repressor TnpA gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2917 N840_2918 N840_2918 ygeQ ygeQ 2999997 3001133 - pseudogene%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2918 N840_2919 N840_2919 glyU glyU 3001289 3001362 - tRNA-Gly anticodon: CCC tRNA gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2919 N840_2920 N840_2920 ygeR ygeR 3001441 3002196 - putative lipoprotein involved in septation putative lipoprotein gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2920 N840_2921 N840_2921 xdhA xdhA 3002650 3004908 + xanthine dehydrogenase%2C molybdenum binding subunit gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2921 N840_2922 N840_2922 xdhB xdhB 3004919 3005797 + xanthine dehydrogenase%2C FAD-binding subunit gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2922 N840_2923 N840_2923 xdhC xdhC 3005794 3006273 + xanthine dehydrogenase%2C Fe-S binding subunit gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2923 N840_2924 N840_2924 ygeV ygeV 3006313 3008091 - putative DNA-binding transcriptional regulator putative transcriptional regulator gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2924 N840_2925 N840_2925 ygeW ygeW 3008567 3009757 + putative carbamoyltransferase putative carbamoyl transferase gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2925 N840_2926 N840_2926 ygeX ygeX 3009815 3011011 + 2%2C3-diaminopropionate ammonia lyase%2C PLP-dependent putative diaminopropionate ammonia-lyase gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2926 N840_2927 N840_2927 ygeY ygeY 3011069 3012280 + putative peptidase putative deacetylase gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2927 N840_2928 N840_2928 hyuA hyuA 3012333 3013718 + D-stereospecific phenylhydantoinase gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2928 N840_2929 N840_2929 yqeA yqeA 3013766 3014698 + putative amino acid kinase putative kinase gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2929 N840_2930 N840_2930 yqeB yqeB 3014918 3016543 - conserved protein with NAD(P)-binding Rossman fold putative synthases gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2930 N840_2931 N840_2931 yqeC yqeC 3016590 3017360 - yqeC gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2931 N840_2932 N840_2932 mocA mocA 3017463 3018041 + CTP:molybdopterin cytidylyltransferase gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2932 N840_2933 N840_2933 ygfK ygfK 3018363 3021461 + putative oxidoreductase%2C Fe-S subunit gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2933 N840_2934 N840_2934 ssnA ssnA 3021464 3022792 + putative chlorohydrolase/aminohydrolase gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2934 N840_2935 N840_2935 ygfM ygfM 3022843 3023622 + putative oxidoreductase gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2935 N840_2936 N840_2936 xdhD xdhD 3023619 3026489 + putative hypoxanthine oxidase%2C molybdopterin-binding/Fe-S binding protein gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2936 N840_2937 N840_2937 xanQ xanQ 3026654 3028054 + xanthine permease gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2937 N840_2938 N840_2938 guaD guaD 3028069 3029388 + guanine deaminase gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2938 N840_2939 N840_2939 ygfQ ygfQ 3029424 3030791 + putative purine permease gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2939 N840_2940 N840_2940 ygfS ygfS 3030827 3031315 - putative oxidoreductase%2C 4Fe-4S ferredoxin-type subunit putative oxidoreductase%2C Fe-S subunit gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2940 N840_2941 N840_2941 ygfT ygfT 3031315 3033234 - fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit putative oxidoreductase%2C Fe-S subunit gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2941 N840_2942 N840_2942 uacT uacT 3033670 3035118 + uric acid permease putative permease gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2942 N840_2943 N840_2943 yqfG yqfG 3035120 3035245 + yqfG expressed protein gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2943 N840_2944 N840_2944 idi idi 3035368 3035916 + isopentenyl diphosphate isomerase gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2944 N840_2945 N840_2945 lysS lysS 3035960 3037477 - lysine tRNA synthetase%2C constitutive lysine tRNA synthetase%2C constitutive%3B suppressor of ColE1 mutation in primer RNA gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2945 N840_2946 N840_2946 prfB prfB 3037487 3038585 - peptide chain release factor RF-2 an in-frame premature UGA termination codon is located within the prfB sequence%2C and a naturally occuring +1 frameshift is required for synthesis of RF-2 gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2946 N840_2947 N840_2947 recJ recJ 3038676 3040409 - ssDNA exonuclease%2C 5' --> 3'-specific ssDNA exonuclease%2C 5' --> 3' specific gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2947 N840_2948 N840_2948 dsbC dsbC 3040415 3041125 - protein disulfide isomerase II gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2948 N840_2949 N840_2949 xerD xerD 3041150 3042046 - site-specific tyrosine recombinase gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2949 N840_2950 N840_2950 fldB fldB 3042158 3042679 + flavodoxin 2 gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2950 N840_2951 N840_2951 cptA cptA 3042719 3043126 - toxin of CptAB toxin-antitoxin pair gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2951 N840_2952 N840_2952 cptB cptB 3043107 3043373 - antitoxin of CptAB toxin-antitoxin pair gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2952 N840_2953 N840_2953 ygfZ ygfZ 3043616 3044596 + iron-sulfur cluster repair protein%2C plumbagin resistance gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2953 N840_2954 N840_2954 yqfA yqfA 3044792 3045451 - inner membrane protein%2C hemolysin III family HylIII putative oxidoreductase gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2954 N840_2955 N840_2955 yqfB yqfB 3045615 3045926 - conserved protein%2C UPF0267 family gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2955 N840_2956 N840_2956 bglA bglA 3045965 3047404 + 6-phospho-beta-glucosidase A 6-phospho-beta-glucosidase A%3B cryptic gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2956 N840_2957 N840_2957 ygfF ygfF 3047461 3048204 - putative NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain putative oxidoreductase gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2957 N840_2958 N840_2958 gcvP gcvP 3048471 3051344 - glycine decarboxylase%2C PLP-dependent%2C subunit (protein P) of glycine cleavage complex glycine decarboxylase%2C P protein of glycine cleavage system gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2958 N840_2959 N840_2959 gcvH gcvH 3051463 3051852 - glycine cleavage complex lipoylprotein in glycine cleavage complex%2C carrier of aminomethyl moiety via covalently bound lipoyl cofactor gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2959 N840_2960 N840_2960 gcvT gcvT 3051876 3052970 - aminomethyltransferase%2C tetrahydrofolate-dependent%2C subunit (T protein) of glycine cleavage complex aminomethyltransferase (T protein%3B tetrahydrofolate-dependent) of glycine cleavage system gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2960 N840_2961 N840_2961 visC visC 3053418 3054620 - putative oxidoreductase with FAD/NAD(P)-binding domain gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2961 N840_2962 N840_2962 ubiH ubiH 3054643 3055821 - 2-octaprenyl-6-methoxyphenol hydroxylase%2C FAD/NAD(P)-binding protein 2-octaprenyl-6-methoxyphenol--> 2-octaprenyl-6-methoxy-1%2C 4-benzoquinone gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2962 N840_2963 N840_2963 pepP pepP 3055818 3057143 - proline aminopeptidase P II gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2963 N840_2964 N840_2964 ygfB ygfB 3057169 3057747 - conserved protein%2C UPF0149 family gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2964 N840_2965 N840_2965 zapA zapA 3057915 3058244 + FtsZ stabilizer gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2965 N840_2966 N840_2966 ssrS ssrS 3058286 3058468 + 6S RNA inhibits RNA polymerase promoter binding template for RNA-directed pRNA synthesis by RNAP%3B mimics an open promoter ncRNA gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2966 N840_2967 N840_2967 fau fau 3058544 3059092 + conserved protein%2C 5-formyltetrahydrofolate cyclo-ligase family putative ligase gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2967 N840_2968 N840_2968 sibC sibC 3059152 3059291 + sRNA antisense regulator of toxic IbsC protein identified in a large scale screen gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2968 N840_2969 N840_2969 ibsC ibsC 3059193 3059252 - toxic membrane protein gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2969 N840_2970 N840_2970 serA serA 3059481 3060713 - D-3-phosphoglycerate dehydrogenase gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2970 N840_2971 N840_2971 rpiA rpiA 3060969 3061628 - ribose 5-phosphate isomerase%2C constitutive ribosephosphate isomerase%2C constitutive gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2971 N840_2972 N840_2972 yqfE yqfE 3061684 3062004 - pseudogene%2C LysR family%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2972 N840_2973 N840_2973 argP argP 3062056 3062949 + DNA-binding transcriptional activator%2C replication initiation inhibitor replication initiation inhibitor%2C binds to 13-mers at oriC gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2973 N840_2974 N840_2974 scpA scpA 3063153 3065297 + methylmalonyl-CoA mutase methylmalonyl-CoA mutase (MCM) gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2974 N840_2975 N840_2975 argK argK 3065290 3066285 + membrane ATPase/protein kinase gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2975 N840_2976 N840_2976 scpB scpB 3066296 3067081 + methylmalonyl-CoA decarboxylase%2C biotin-independent putative enzyme gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2976 N840_2977 N840_2977 scpC scpC 3067105 3068583 + propionyl-CoA:succinate CoA transferase putative coenzyme A transferase gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2977 N840_2978 N840_2978 ygfI ygfI 3068580 3069476 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2978 N840_2979 N840_2979 yggE yggE 3069643 3070383 - oxidative stress defense protein putative actin gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2979 N840_2980 N840_2980 argO argO 3070476 3071111 - arginine transporter gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2980 N840_2981 N840_2981 mscS mscS 3071250 3072110 - mechanosensitive channel protein%2C small conductance gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2981 N840_2982 N840_2982 fbaA fbaA 3072468 3073547 - fructose-bisphosphate aldolase%2C class II gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2982 N840_2983 N840_2983 pgk pgk 3073762 3074925 - phosphoglycerate kinase gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2983 N840_2984 N840_2984 epd epd 3074975 3075994 - D-erythrose 4-phosphate dehydrogenase gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2984 N840_2985 N840_2985 yggC yggC 3076279 3076992 - conserved protein with nucleoside triphosphate hydrolase domain putative kinase gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2985 N840_2986 N840_2986 yggD yggD 3076989 3077498 - putative DNA-binding transcriptional regulator putative transcriptional regulator gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2986 N840_2987 N840_2987 yggF yggF 3077520 3078485 - fructose 1%2C6 bisphosphatase isozyme gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2987 N840_2988 N840_2988 yggP yggP 3078482 3079759 - putative dehydrogenase gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2988 N840_2989 N840_2989 cmtA cmtA 3079774 3081162 - putative fused mannitol-specific PTS enzymes: IIB component/IIC component PTS system%2C mannitol-specific enzyme II component%2C cryptic gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2989 N840_2990 N840_2990 cmtB cmtB 3081190 3081633 - putative mannitol-specific enzyme IIA component of PTS PTS system%2C mannitol-specific enzyme II component%2C cryptic gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2990 N840_2991 N840_2991 tktA tktA 3081947 3083938 - transketolase 1%2C thiamin-binding protein transketolase 1 isozyme gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2991 N840_2992 N840_2992 loiP loiP 3084216 3084974 + Phe-Phe periplasmic metalloprotease%2C OM lipoprotein%3B low salt-inducible%3B heat shock protein that binds Era gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2992 N840_2993 N840_2993 speB speB 3085180 3086100 - agmatinase gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2993 N840_2994 N840_2994 speA speA 3086238 3088214 - biosynthetic arginine decarboxylase%2C PLP-binding protein biosynthetic arginine decarboxylase gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2994 N840_2995 N840_2995 yqgB yqgB 3088223 3088354 - yqgB gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2995 N840_2996 N840_2996 yqgC yqgC 3088490 3088705 + yqgC gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2996 N840_2997 N840_2997 metK metK 3089009 3090163 + S-adenosylmethionine synthetase methionine adenosyltransferase 1 (AdoMet synthetase)%3B methyl and propylamine donor%2C corepressor of met genes gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2997 N840_2998 N840_2998 galP galP 3090587 3091981 + D-galactose transporter galactose-proton symport of transport system gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2998 N840_2999 N840_2999 yggI yggI 3092058 3092555 + yggI gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=N840_2999 N840_3000 N840_3000 endA endA 3092650 3093357 + DNA-specific endonuclease I gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3000 N840_3001 N840_3001 rsmE rsmE 3093437 3094168 + 16S rRNA m(3)U1498 methyltransferase%2C SAM-dependent gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3001 N840_3002 N840_3002 gshB gshB 3094181 3095131 + glutathione synthetase gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3002 N840_3003 N840_3003 yqgE yqgE 3095240 3095803 + yqgE gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3003 N840_3004 N840_3004 yqgF yqgF 3095803 3096219 + putative Holliday junction resolvase gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3004 N840_3005 N840_3005 yggR yggR 3096403 3097383 - putative pilus retraction ATPase putative protein transport gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3005 N840_3006 N840_3006 yggS yggS 3097401 3098105 + putative enzyme%2C binds pyridoxal 5'-phosphate gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3006 N840_3007 N840_3007 yggT yggT 3098123 3098689 + putative inner membrane protein conserved hypothetical integral membrane protein gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3007 N840_3008 N840_3008 yggU yggU 3098686 3098976 + conserved protein%2C UPF0235 family gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3008 N840_3009 N840_3009 rdgB rdgB 3098984 3099577 + dITP/XTP pyrophosphatase putative ribosomal protein gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3009 N840_3010 N840_3010 yggW yggW 3099570 3100706 + putative oxidoreductase%2C HemN family putative oxidase gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3010 N840_3011 N840_3011 yggM yggM 3100861 3101868 - yggM putative alpha helix chain gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3011 N840_3012 N840_3012 ansB ansB 3101985 3103031 - periplasmic L-asparaginase II gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3012 N840_3013 N840_3013 yggN yggN 3103207 3103926 - yggN gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3013 N840_3014 N840_3014 yggL yggL 3104110 3104436 - conserved protein%2C DUF469 family gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3014 N840_3015 N840_3015 trmI trmI 3104436 3105155 - tRNA m(7)G46 methyltransferase%2C SAM-dependent gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3015 N840_3016 N840_3016 mutY mutY 3105316 3106368 + adenine DNA glycosylase adenine glycosylase%3B G.C --> T.A transversions gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3016 N840_3017 N840_3017 yggX yggX 3106396 3106671 + protein that protects iron-sulfur proteins against oxidative damage gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3017 N840_3018 N840_3018 mltC mltC 3106736 3107815 + membrane-bound lytic murein transglycosylase C gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3018 N840_3019 N840_3019 nupG nupG 3108017 3109273 + nucleoside transporter transport of nucleosides%2C permease protein gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3019 N840_3020 N840_3020 speC speC 3109323 3111458 - ornithine decarboxylase%2C constitutive ornithine decarboxylase isozyme gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3020 N840_3021 N840_3021 yqgA yqgA 3111856 3112563 + putative inner membrane protein%2C DUF554 family putative transport protein gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3021 N840_3022 N840_3022 pheV pheV 3112669 3112744 + tRNA-Phe anticodon: GAA tRNA gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3022 N840_3023 N840_3023 yghD yghD 3112893 3113429 - putative secretion pathway M-type protein%2C membrane anchored putative secretion pathway protein gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3023 N840_3024 N840_3024 yghE yghE 3113431 3114393 - pseudogene%2C secretion pathway protein%2C L-type protein homology%3B putative general secretion pathway for protein export (GSP)%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3024 N840_3025 N840_3025 yghF yghF 3114396 3115244 - pseudogene%2C secretion pathway protein%2C C-type protein homology%3Bputative transport%3B Not classified%3B putative general secretion pathway for protein export (GSP)%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3025 N840_3026 N840_3026 yghG yghG 3115370 3115780 - pilotin%2C required for secretin (GspDbeta) OM localization%3B part of defective Gsp-beta operon%3B verified lipoprotein gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3026 N840_3027 N840_3027 pppA pppA 3115846 3116655 - bifunctional prepilin leader peptidase/ methylase gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3027 N840_3028 N840_3028 yghJ yghJ 3116853 3121415 - putative inner membrane lipoprotein putative lipoprotein gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3028 N840_3029 N840_3029 glcA glcA 3121900 3123582 - glycolate transporter putative permease gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3029 N840_3030 N840_3030 glcB glcB 3123937 3126108 - malate synthase G gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3030 N840_3031 N840_3031 glcG glcG 3126130 3126534 - glcG gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3031 N840_3032 N840_3032 glcF glcF 3126539 3127762 - glycolate oxidase 4Fe-4S iron-sulfur cluster subunit gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3032 N840_3033 N840_3033 glcE glcE 3127773 3128825 - glycolate oxidase FAD binding subunit glycolate oxidase iron-sulfur subunit gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3033 N840_3034 N840_3034 glcD glcD 3128825 3130324 - glycolate oxidase subunit%2C FAD-linked glycolate oxidase subunit D gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3034 N840_3035 N840_3035 glcC glcC 3130575 3131339 + DNA-binding transcriptional dual regulator%2C glycolate-binding protein transcriptional activator for glc operon gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3035 N840_3036 N840_3036 yghO yghO 3131346 3132446 - pseudogene%2C DNA-binding transcriptional regulator homology%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3036 N840_3037 N840_3037 insH1 insH1 3132481 3133497 + IS5 transposase and trans-activator gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3037 N840_3038 N840_3038 yghQ yghQ 3133644 3134711 - putative inner membrane protein gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3038 N840_3039 N840_3039 yghR yghR 3134757 3135515 - putative ATP-binding protein gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3039 N840_3040 N840_3040 yghS yghS 3135547 3136260 - putative ATP-binding protein gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3040 N840_3041 N840_3041 yghT yghT 3136434 3137125 + Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3041 N840_3042 N840_3042 pitB pitB 3137174 3138673 - phosphate transporter low-affinity phosphate transport gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3042 N840_3043 N840_3043 gss gss 3138965 3140824 - fused glutathionylspermidine amidase/glutathionylspermidine synthetase glutathionylspermidine synthetase/amidase gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3043 N840_3044 N840_3044 yghU yghU 3141029 3141895 + putative S-transferase gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3044 N840_3045 N840_3045 hybG hybG 3142018 3142266 - hydrogenase 2 accessory protein hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2 gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3045 N840_3046 N840_3046 hybF hybF 3142279 3142620 - protein involved with the maturation of hydrogenases 1 and 2 may modulate levels of hydrogenease-2 gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3046 N840_3047 N840_3047 hybE hybE 3142613 3143101 - hydrogenase 2-specific chaperone member of hyb operon gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3047 N840_3048 N840_3048 hybD hybD 3143094 3143588 - maturation protease for hydrogenase 2 probable processing element for hydrogenase-2 gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3048 N840_3049 N840_3049 hybC hybC 3143588 3145291 - hydrogenase 2%2C large subunit probable large subunit%2C hydrogenase-2 gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3049 N840_3050 N840_3050 hybB hybB 3145288 3146466 - putative hydrogenase 2 cytochrome b type component probable cytochrome Ni/Fe component of hydrogenase-2 gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3050 N840_3051 N840_3051 hybA hybA 3146456 3147442 - hydrogenase 2 4Fe-4S ferredoxin-type component hydrogenase-2 small subunit gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3051 N840_3052 N840_3052 hybO hybO 3147445 3148563 - hydrogenase 2%2C small subunit gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3052 N840_3053 N840_3053 yghW yghW 3148752 3149039 - yghW gene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3053 N840_3054 N840_3054 yghX yghX 3149158 3149993 - predicted dienlactone hydrolase (pseudogene) pseudogene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3054 N840_3055 N840_3055 gpr gpr 3150199 3151239 + L-glyceraldehyde 3-phosphate reductase putative reductase gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3055 N840_3056 N840_3056 yqhA yqhA 3151279 3151773 - putative inner membrane protein%2C UPF0114 family gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3056 N840_3057 N840_3057 yghA yghA 3151964 3152848 + putative oxidoreductase gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3057 N840_3058 N840_3058 exbD exbD 3153120 3153545 - membrane spanning protein in TonB-ExbB-ExbD complex uptake of enterochelin%3B tonB-dependent uptake of B colicins gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3058 N840_3059 N840_3059 exbB exbB 3153552 3154286 - membrane spanning protein in TonB-ExbB-ExbD complex uptake of enterochelin%3B tonB-dependent uptake of B colicins gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3059 N840_3060 N840_3060 metC metC 3154538 3155725 + cystathionine beta-lyase%2C PLP-dependent cystathionine beta-lyase (beta-cystathionase) gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3060 N840_3061 N840_3061 yghB yghB 3155865 3156524 + required%2C with yqjA%2C for membrane integrity%3B inner membrane protein gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3061 N840_3062 N840_3062 yqhC yqhC 3156564 3157520 - transcriptional activator of yqhD putative ARAC-type regulatory protein gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3062 N840_3063 N840_3063 yqhD yqhD 3157657 3158820 + aldehyde reductase%2C NADPH-dependent putative oxidoreductase gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3063 N840_3064 N840_3064 dkgA dkgA 3158925 3159752 + 2%2C5-diketo-D-gluconate reductase A gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3064 N840_3065 N840_3065 yqhG yqhG 3159952 3160878 + yqhG gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3065 N840_3066 N840_3066 yqhH yqhH 3160929 3161186 + outer membrane lipoprotein%2C Lpp-like protein gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3066 N840_3067 N840_3067 ygiQ ygiQ 3161229 3163448 - Radical SAM superfamily protein gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3067 N840_3068 N840_3068 ftsP ftsP 3163559 3164971 - septal ring component that protects the divisome from stress%3B multicopy suppressor of ftsI(Ts) suppressor of ftsI gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3068 N840_3069 N840_3069 plsC plsC 3165046 3165783 - 1-acyl-sn-glycerol-3-phosphate acyltransferase gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3069 N840_3070 N840_3070 parC parC 3166017 3168275 - DNA topoisomerase IV%2C subunit A DNA topoisomerase IV subunit A gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3070 N840_3071 N840_3071 ygiS ygiS 3168413 3170020 - putative transporter subunit: periplasmic-binding component of ABC superfamily putative transport periplasmic protein gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3071 N840_3072 N840_3072 mqsA mqsA 3170153 3170548 - antitoxin for MqsR toxin%3B transcriptional repressor gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3072 N840_3073 N840_3073 mqsR mqsR 3170550 3170846 - GCU-specific mRNA interferase toxin of the MqsR-MqsA toxin-antitoxin system%3B biofilm/motility regulator%3B anti-repressor gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3073 N840_3074 N840_3074 ygiV ygiV 3171051 3171533 - transcriptional repressor for mcbR biofilm gene gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3074 N840_3075 N840_3075 ygiW ygiW 3171586 3171978 - ygiW gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3075 N840_3076 N840_3076 qseB qseB 3172130 3172789 + quorum sensing DNA-binding response regulator in two-component regulatory system with QseC putative 2-component transcriptional regulator gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3076 N840_3077 N840_3077 qseC qseC 3172786 3174135 + quorum sensing sensory histidine kinase in two-component regulatory system with QseB putative 2-component sensor protein gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3077 N840_3078 N840_3078 ygiZ ygiZ 3174181 3174513 - inner membrane protein gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3078 N840_3079 N840_3079 mdaB mdaB 3174832 3175413 + NADPH quinone reductase modulator of drug activity B gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3079 N840_3080 N840_3080 ygiN ygiN 3175444 3175758 + quinol monooxygenase gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3080 N840_3081 N840_3081 parE parE 3175806 3177698 - DNA topoisomerase IV%2C subunit B DNA topoisomerase IV subunit B gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3081 N840_3082 N840_3082 yqiA yqiA 3177727 3178308 - acyl CoA esterase gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3082 N840_3083 N840_3083 cpdA cpdA 3178308 3179135 - 3'%2C5' cAMP phosphodiesterase gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3083 N840_3084 N840_3084 yqiB yqiB 3179160 3179582 - DUF1249 protein YqiB putative enzyme gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3084 N840_3085 N840_3085 nudF nudF 3179583 3180212 - ADP-ribose pyrophosphatase gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3085 N840_3086 N840_3086 ygiB ygiB 3180428 3181099 + conserved protein%2C UPF0441 family gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3086 N840_3087 N840_3087 ygiC ygiC 3181105 3182265 + glutathionylspermidine synthase-like protein putative synthetase/amidase gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3087 N840_3088 N840_3088 ygiD ygiD 3182303 3183091 - putative dioxygenase%2C LigB family gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3088 N840_3089 N840_3089 zupT zupT 3183234 3184007 + zinc transporter gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3089 N840_3090 N840_3090 ribB ribB 3184497 3185150 - 3%2C4-dihydroxy-2-butanone-4-phosphate synthase 3%2C4 dihydroxy-2-butanone-4-phosphate synthase gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3090 N840_3091 N840_3091 yqiC yqiC 3185524 3185814 + yqiC gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3091 N840_3092 N840_3092 ygiL ygiL 3186098 3186649 + putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3092 N840_3093 N840_3093 yqiG yqiG 3186745 3190549 + pseudogene%3B outer membrane usher homology%3Bputative membrane%3B Not classified%3B putative membrane protein%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3093 N840_3094 N840_3094 insC1 insC1 3186871 3187236 + IS2 repressor TnpA gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3094 N840_3095 N840_3095 insD1 insD1 3187194 3188099 + IS2 transposase TnpB gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3095 N840_3096 N840_3096 yqiH yqiH 3190565 3191314 + putative periplasmic pilin chaperone putative membrane protein gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3096 N840_3097 N840_3097 yqiI yqiI 3191316 3192380 + yqiI gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3097 N840_3098 N840_3098 glgS glgS 3192423 3192623 - putative glycogen synthesis protein glycogen biosynthesis%2C rpoS dependent gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3098 N840_3099 N840_3099 yqiJ yqiJ 3192892 3193521 + inner membrane protein%2C DUF1449 family putative oxidoreductase gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3099 N840_3100 N840_3100 yqiK yqiK 3193548 3195209 + PHB family membrane protein%2C function unknown putative membrane protein gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3100 N840_3101 N840_3101 sibD sibD 3195407 3195549 - sRNA antisense regulator of toxic IbsD protein identified in a large scale screen gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3101 N840_3102 N840_3102 ibsD ibsD 3195450 3195509 + toxic membrane protein gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3102 N840_3103 N840_3103 sibE sibE 3195783 3195924 - sRNA antisense regulator of toxic IbsE protein gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3103 N840_3104 N840_3104 ibsE ibsE 3195825 3195884 + toxic membrane protein gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3104 N840_3105 N840_3105 hldE hldE 3196004 3197437 - fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3105 N840_3106 N840_3106 glnE glnE 3197485 3200325 - fused deadenylyltransferase/adenylyltransferase for glutamine synthetase adenylylating enzyme for glutamine synthetase gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3106 N840_3107 N840_3107 ygiF ygiF 3200348 3201649 - putative adenylate cyclase gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3107 N840_3108 N840_3108 ygiM ygiM 3201891 3202511 + SH3 domain protein gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3108 N840_3109 N840_3109 cca cca 3202575 3203813 + fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase tRNA nucleotidyl transferase gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3109 N840_3110 N840_3110 bacA bacA 3203994 3204815 - undecaprenyl pyrophosphate phosphatase bacitracin resistance%3B possibly phosphorylates undecaprenol gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3110 N840_3111 N840_3111 folB folB 3204905 3205273 - bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase putative kinase gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3111 N840_3112 N840_3112 plsY plsY 3205378 3205995 + putative glycerol-3-phosphate acyltransferase gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3112 N840_3113 N840_3113 ttdR ttdR 3206008 3206940 - transcriptional activator of ttdABT putative transcriptional regulator LYSR-type gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3113 N840_3114 N840_3114 ttdA ttdA 3207147 3208058 + L-tartrate dehydratase%2C alpha subunit L-tartrate dehydratase%2C subunit A gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3114 N840_3115 N840_3115 ttdB ttdB 3208055 3208660 + L-tartrate dehydratase%2C beta subunit L-tartrate dehydratase%2C subunit B gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3115 N840_3116 N840_3116 ttdT ttdT 3208708 3210171 + L-tartrate/succinate antiporte gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3116 N840_3117 N840_3117 tsaD tsaD 3210214 3211227 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein%3B glycation binding protein putative O-sialoglycoprotein endopeptidase gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3117 N840_3118 N840_3118 rpsU rpsU 3211465 3211680 + 30S ribosomal subunit protein S21 gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3118 N840_3119 N840_3119 dnaG dnaG 3211791 3213536 + DNA primase DNA biosynthesis%3B DNA primase gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3119 N840_3120 N840_3120 rpoD rpoD 3213731 3215572 + RNA polymerase%2C sigma 70 (sigma D) factor RNA polymerase%2C sigma(70) factor%3B regulation of proteins induced at high temperatures gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3120 N840_3121 N840_3121 mug mug 3215651 3216157 - G/U mismatch-specific DNA glycosylase%3B xanthine DNA glycosylase gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3121 N840_3122 N840_3122 ileX ileX 3216282 3216357 + tRNA-Ile anticodon: CAU tRNA gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3122 N840_3123 N840_3123 yqjH yqjH 3216411 3217175 - putative siderophore interacting protein gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3123 N840_3124 N840_3124 yqjI yqjI 3217463 3218086 + putative transcriptional regulator%2C PadR family gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3124 N840_3125 N840_3125 aer aer 3218240 3219760 - fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component aerotaxis sensor receptor%2C flavoprotein gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3125 N840_3126 N840_3126 patA patA 3220178 3221557 + putrescine:2-oxoglutaric acid aminotransferase%2C PLP-dependent probable ornithine aminotransferase gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3126 N840_3127 N840_3127 ygjH ygjH 3221599 3221931 - putative tRNA binding protein%3B putative tRNA corner chaperone putative tRNA synthetase gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3127 N840_3128 N840_3128 ebgR ebgR 3222150 3223133 + DNA-binding transcriptional repressor regulator of ebg operon gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3128 N840_3129 N840_3129 ebgA ebgA 3223317 3226409 + cryptic beta-D-galactosidase%2C alpha subunit evolved beta-D-galactosidase%2C alpha subunit%3B cryptic gene gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3129 N840_3130 N840_3130 ebgC ebgC 3226406 3226855 + cryptic beta-D-galactosidase%2C beta subunit evolved beta-D-galactosidase%2C beta subunit%3B cryptic gene gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3130 N840_3131 N840_3131 ygjI ygjI 3226918 3228351 + putative transporter putative oxidoreductase gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3131 N840_3132 N840_3132 ygjJ ygjJ 3228485 3229555 + ygjJ gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3132 N840_3133 N840_3133 ygjK ygjK 3229572 3231923 + alpha-glucosidase putative isomerase gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3133 N840_3134 N840_3134 fadH fadH 3232349 3234367 + 2%2C4-dienoyl-CoA reductase%2C NADH and FMN-linked gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3134 N840_3135 N840_3135 higA higA 3234412 3234828 - antitoxinof the HigB-HigA toxin-antitoxin system gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3135 N840_3136 N840_3136 higB higB 3234825 3235139 - mRNA interferase toxin of the HigB-HigA toxin-antitoxin system gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3136 N840_3137 N840_3137 rlmG rlmG 3235423 3236559 - 23S rRNA m(2)G1835 methyltransferase%2C SAM-dependent putative enzyme gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3137 N840_3138 N840_3138 ygjP ygjP 3236644 3237147 + putative metal dependent hydrolase gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3138 N840_3139 N840_3139 ygjQ ygjQ 3237224 3237916 + conserved protein%2C SanA family%2C DUF218 superfamily gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3139 N840_3140 N840_3140 ygjR ygjR 3237995 3238981 + putative NAD(P)-binding dehydrogenase gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3140 N840_3141 N840_3141 alx alx 3239263 3240228 + inner membrane protein%2C part of terminus putative transport protein gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3141 N840_3142 N840_3142 sstT sstT 3240627 3241873 + putative transport protein%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3142 N840_3143 N840_3143 ygjV ygjV 3241878 3242429 - inner membrane protein%2C Imp-YgjV family gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3143 N840_3144 N840_3144 uxaA uxaA 3242512 3243999 - altronate hydrolase gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3144 N840_3145 N840_3145 uxaC uxaC 3244014 3245426 - uronate isomerase gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3145 N840_3146 N840_3146 exuT exuT 3245789 3247207 + hexuronate transporter transport of hexuronates gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3146 N840_3147 N840_3147 exuR exuR 3247337 3248113 + DNA-binding transcriptional repressor negative regulator of exu regulon%2C exuT%2C uxaAC%2C and uxuB gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3147 N840_3148 N840_3148 yqjA yqjA 3248458 3249120 + required%2C with yghB%2C for membrane integrity%3B inner membrane protein gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3148 N840_3149 N840_3149 mzrA mzrA 3249124 3249507 + modulator of EnvZ/OmpR regulon gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3149 N840_3150 N840_3150 yqjC yqjC 3249654 3250022 + yqjC gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3150 N840_3151 N840_3151 yqjD yqjD 3250060 3250365 + membrane-anchored ribosome-binding protein gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3151 N840_3152 N840_3152 yqjE yqjE 3250368 3250772 + inner membrane protein%2C DUF1469 family gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3152 N840_3153 N840_3153 yqjK yqjK 3250762 3251061 + yqjK gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3153 N840_3154 N840_3154 yqjF yqjF 3251247 3251639 + putative quinol oxidase subunit gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3154 N840_3155 N840_3155 yqjG yqjG 3251709 3252695 + putative S-transferase putative transferase gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3155 N840_3156 N840_3156 yhaH yhaH 3252989 3253354 + inner membrane protein%2C DUF805 family putative cytochrome gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3156 N840_3157 N840_3157 yhaI yhaI 3253596 3253952 + inner membrane protein%2C DUF805 family putative cytochrome gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3157 N840_3158 N840_3158 yhaJ yhaJ 3254003 3254899 - putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3158 N840_3159 N840_3159 yhaK yhaK 3255004 3255705 + redox-sensitive bicupin gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3159 N840_3160 N840_3160 yhaL yhaL 3255728 3255892 + yhaL gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3160 N840_3161 N840_3161 yhaM yhaM 3256026 3257336 - yhaM conserved hypothetical protein gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3161 N840_3162 N840_3162 yhaO yhaO 3257364 3258695 - putative transporter putative transport system permease protein gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3162 N840_3163 N840_3163 tdcG tdcG 3258970 3260334 - L-serine dehydratase 3 L-serine dehydratase gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3163 N840_3164 N840_3164 tdcF tdcF 3260406 3260795 - putative reactive intermediate deaminase gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3164 N840_3165 N840_3165 tdcE tdcE 3260809 3263103 - pyruvate formate-lyase 4/2-ketobutyrate formate-lyase probable formate acetyltransferase 3 gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3165 N840_3166 N840_3166 tdcD tdcD 3263137 3264345 - propionate kinase/acetate kinase C%2C anaerobic propionate kinase/acetate kinase II%2C anaerobic gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3166 N840_3167 N840_3167 tdcC tdcC 3264371 3265702 - L-threonine/L-serine transporter anaerobically inducible L-threonine%2C L-serine permease gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3167 N840_3168 N840_3168 tdcB tdcB 3265724 3266713 - catabolic threonine dehydratase%2C PLP-dependent threonine dehydratase%2C catabolic gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3168 N840_3169 N840_3169 tdcA tdcA 3266812 3267750 - DNA-binding transcriptional activator transcriptional activator of tdc operon gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3169 N840_3170 N840_3170 tdcR tdcR 3268065 3268283 + DNA-binding transcriptional activator threonine dehydratase operon activator protein gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3170 N840_3171 N840_3171 yhaB yhaB 3268539 3269078 + yhaB gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3171 N840_3172 N840_3172 yhaC yhaC 3269100 3270287 + yhaC gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3172 N840_3173 N840_3173 rnpB rnpB 3270901 3271277 - RNase P%2C M1 RNA component RNase P is an essential enzyme responsible for the processing of the 5' ends of precursors to tRNA%2C 4.5S RNA%2C and other naturally occurring stable RNA molecules%3B RNase P also affects gene expression of polycistronic operon mRNAs gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3173 N840_3174 N840_3174 garK garK 3271310 3272455 - glycerate kinase I gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3174 N840_3175 N840_3175 garR garR 3272552 3273436 - tartronate semialdehyde reductase tartronate semialdehyde reductase (TSAR) gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3175 N840_3176 N840_3176 garL garL 3273472 3274242 - alpha-dehydro-beta-deoxy-D-glucarate aldolase gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3176 N840_3177 N840_3177 garP garP 3274258 3275592 - putative (D)-galactarate transporter putative transport protein gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3177 N840_3178 N840_3178 garD garD 3275967 3277538 + (D)-galactarate dehydrogenase gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3178 N840_3179 N840_3179 prlF prlF 3277687 3278022 + antitoxin of the SohA(PrlF)-YhaV toxin-antitoxin system putative protease%3B htrA suppressor protein gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3179 N840_3180 N840_3180 yhaV yhaV 3278022 3278486 + toxin of the SohB(PrlF)-YhaV toxin-antitoxin system gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3180 N840_3181 N840_3181 agaR agaR 3278541 3279350 - DNA-binding transcriptional repressor of the aga regulon putative DEOR-type transcriptional regulator of aga operon gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3181 N840_3182 N840_3182 kbaZ kbaZ 3279599 3280879 + tagatose 6-phosphate aldolase 1%2C kbaZ subunit putative tagatose 6-phosphate kinase 2 gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3182 N840_3183 N840_3183 agaV agaV 3280902 3281375 + N-acetylgalactosamine-specific enzyme IIB component of PTS PTS system%2C cytoplasmic%2C N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3183 N840_3184 N840_3184 agaW agaW 3281386 3281760 + N-acetylgalactosamine-specific enzyme IIC component of PTS%2C fragment (pseudogene)%3Benzyme%3B Central intermediary metabolism: Amino sugars%3B PTS system N-acetylgalactosameine-specific IIC component 2%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3184 N840_3185 N840_3185 agaA agaA 3281756 3282310 + pseudogene%2C predicted truncated N-acetylgalactosamine-6-phosphate deacetylase%3B putative N-acetylgalactosamine-6-phosphate deacetylase%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3185 N840_3186 N840_3186 agaS agaS 3282661 3283815 + tagatose-6-phosphate ketose/aldose isomerase putative tagatose-6-phosphate aldose/ketose isomerase gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3186 N840_3187 N840_3187 kbaY kbaY 3283828 3284688 + tagatose 6-phosphate aldolase 1%2C kbaY subunit tagatose-bisphosphate aldolase 2 gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3187 N840_3188 N840_3188 agaB agaB 3284855 3285331 + N-acetylgalactosamine-specific enzyme IIB component of PTS PTS system%2C cytoplasmic%2C N-acetylgalactosamine-specific IIB component 1 (EIIB-AGA) gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3188 N840_3189 N840_3189 agaC agaC 3285370 3286173 + N-acetylgalactosamine-specific enzyme IIC component of PTS PTS system N-acetylgalactosamine-specific IIC component 1 gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3189 N840_3190 N840_3190 agaD agaD 3286163 3286954 + N-acetylgalactosamine-specific enzyme IID component of PTS PTS system%2C N-acetylglucosamine enzyme IID component 1 gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3190 N840_3191 N840_3191 agaI agaI 3286955 3287710 + galactosamine-6-phosphate isomerase putative galactosamine-6-phosphate isomerase gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3191 N840_3192 N840_3192 yraH yraH 3288111 3288695 + putative fimbrial-like adhesin protein putative fimbrial-like protein gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3192 N840_3193 N840_3193 yraI yraI 3288775 3289470 + putative periplasmic pilin chaperone putative chaperone gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3193 N840_3194 N840_3194 yraJ yraJ 3289499 3292015 + putative outer membrane protein gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3194 N840_3195 N840_3195 yraK yraK 3292026 3293117 + putative fimbrial-like adhesin protein putative fimbrial protein gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3195 N840_3196 N840_3196 rsmI rsmI 3293160 3294020 - 16S rRNA C1402 2'-O-ribose methyltransferase%2C SAM-dependent gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3196 N840_3197 N840_3197 lpoA lpoA 3294085 3296121 + lpoA putative glycosylase gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3197 N840_3198 N840_3198 yraN yraN 3296079 3296474 + conserved protein%2C UPF0102 family gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3198 N840_3199 N840_3199 diaA diaA 3296494 3297084 + DnaA initiator-associating factor for replication initiation gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3199 N840_3200 N840_3200 yraP yraP 3297094 3297669 + outer membrane lipoprotein putative periplasmic protein gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3200 N840_3201 N840_3201 yraQ yraQ 3297783 3298823 - putative permease gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3201 N840_3202 N840_3202 yraR yraR 3298896 3299531 - putative nucleoside-diphosphate-sugar epimerase gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3202 N840_3203 N840_3203 yhbO yhbO 3299659 3300177 + stress-resistance protein gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3203 N840_3204 N840_3204 yhbP yhbP 3300157 3300600 - conserved protein%2C UPF0306 family gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3204 N840_3205 N840_3205 yhbQ yhbQ 3300651 3300953 + conserved protein%2C GIY-YIG nuclease superfamily gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3205 N840_3206 N840_3206 yhbS yhbS 3300940 3301443 - putative acyltransferase with acyl-CoA N-acyltransferase domain gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3206 N840_3207 N840_3207 yhbT yhbT 3301437 3301961 - putative lipid carrier protein%2C COG3154 family gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3207 N840_3208 N840_3208 yhbU yhbU 3302170 3303165 + putative peptidase (collagenase-like) putative collagenase gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3208 N840_3209 N840_3209 yhbV yhbV 3303174 3304052 + putative protease gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3209 N840_3210 N840_3210 yhbW yhbW 3304133 3305140 + putative enzyme gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3210 N840_3211 N840_3211 mtr mtr 3305258 3306502 - tryptophan transporter of high affinity tryptophan-specific transport protein gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3211 N840_3212 N840_3212 deaD deaD 3306656 3308545 - ATP-dependent RNA helicase inducible ATP-independent RNA helicase gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3212 N840_3213 N840_3213 yrbN yrbN 3308538 3308618 - yrbN expressed protein gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3213 N840_3214 N840_3214 nlpI nlpI 3308725 3309609 - lipoprotein involved in osmotic sensitivity and filamentation gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3214 N840_3215 N840_3215 pnp pnp 3309718 3311853 - polynucleotide phosphorylase/polyadenylase polynucleotide phosphorylase%3B cytidylate kinase activity gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3215 N840_3216 N840_3216 psrO psrO 3311910 3312083 + novel sRNA%2C function unknown identified in a large scale screen ncRNA gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3216 N840_3217 N840_3217 rpsO rpsO 3312100 3312369 - 30S ribosomal subunit protein S15 gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3217 N840_3218 N840_3218 truB truB 3312518 3313462 - tRNA pseudouridine(55) synthase tRNA pseudouridine 5S synthase gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3218 N840_3219 N840_3219 rbfA rbfA 3313462 3313863 - 30s ribosome binding factor ribosome-binding factor A gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3219 N840_3220 N840_3220 infB infB 3314027 3316699 - fused protein chain initiation factor 2%2C IF2: membrane protein/conserved protein protein chain initiation factor IF-2 gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3220 N840_3221 N840_3221 nusA nusA 3316724 3318211 - transcription termination/antitermination L factor transcription pausing%3B L factor gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3221 N840_3222 N840_3222 rimP rimP 3318239 3318691 - ribosome maturation factor for 30S subunits gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3222 N840_3223 N840_3223 metY metY 3318898 3318974 - tRNA-Met anticodon: CAU tRNA gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3223 N840_3224 N840_3224 argG argG 3319322 3320665 + argininosuccinate synthetase gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3224 N840_3225 N840_3225 yhbX yhbX 3320673 3322298 - putative hydrolase%2C inner membrane putative alkaline phosphatase I gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3225 N840_3226 N840_3226 leuU leuU 3322757 3322843 - tRNA-Leu anticodon: UAG tRNA gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3226 N840_3227 N840_3227 secG secG 3322858 3323190 - preprotein translocase membrane subunit protein export - membrane protein gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3227 N840_3228 N840_3228 glmM glmM 3323418 3324755 - phosphoglucosamine mutase gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3228 N840_3229 N840_3229 folP folP 3324748 3325596 - 7%2C8-dihydropteroate synthase gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3229 N840_3230 N840_3230 ftsH ftsH 3325686 3327620 - protease%2C ATP-dependent zinc-metallo gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3230 N840_3231 N840_3231 rlmE rlmE 3327720 3328349 - 23S rRNA U2552 2'-O-ribose methyltransferase%2C SAM-dependent gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3231 N840_3232 N840_3232 yhbY yhbY 3328475 3328768 + RNA binding protein associated with pre-50S ribosomal subunits gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3232 N840_3233 N840_3233 greA greA 3328924 3329400 - transcript cleavage factor transcription elongation factor: cleaves 3' nucleotide of paused mRNA gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3233 N840_3234 N840_3234 dacB dacB 3329648 3331082 + D-alanyl-D-alanine carboxypeptidase%2C fraction B%3B penicillin-binding protein 4%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3234 N840_3235 N840_3235 obgE obgE 3331268 3332440 - GTPase involved in cell partioning and DNA repair putative GTP-binding factor gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3235 N840_3236 N840_3236 yhbE yhbE 3332456 3333421 - putative inner membrane permease gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3236 N840_3237 N840_3237 rpmA rpmA 3333548 3333805 - 50S ribosomal subunit protein L27 gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3237 N840_3238 N840_3238 rplU rplU 3333826 3334137 - 50S ribosomal subunit protein L21 gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3238 N840_3239 N840_3239 ispB ispB 3334396 3335367 + octaprenyl diphosphate synthase gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3239 N840_3240 N840_3240 sfsB sfsB 3335595 3335873 + DNA-binding transcriptional activator of maltose metabolism regulatory factor of maltose metabolism%3B similar to Ner repressor protein of phage Mu gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3240 N840_3241 N840_3241 murA murA 3335921 3337180 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase first step in murein biosynthesis%3BUDP-N-glucosamine 1-carboxyvinyltransferase gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3241 N840_3242 N840_3242 ibaG ibaG 3337235 3337489 - acid stress protein%3B predicted transcriptional regulator%2C BolA family gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3242 N840_3243 N840_3243 mlaB mlaB 3337649 3337942 - ABC transporter maintaining OM lipid asymmetry%2C cytoplasmic STAS component gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3243 N840_3244 N840_3244 mlaC mlaC 3337942 3338577 - ABC transporter maintaining OM lipid asymmetry%2C periplasmic binding protein gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3244 N840_3245 N840_3245 mlaD mlaD 3338596 3339147 - ABC transporter maintaining OM lipid asymmetry%2C anchored periplasmic binding protein gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3245 N840_3246 N840_3246 mlaE mlaE 3339152 3339934 - ABC transporter maintaining OM lipid asymmetry%2C inner membrane permease protein gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3246 N840_3247 N840_3247 mlaF mlaF 3339942 3340751 - ABC transporter maintaining OM lipid asymmetry%2C ATP-binding protein putative ATP-binding component of a transport system gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3247 N840_3248 N840_3248 yrbG yrbG 3340961 3341938 + putative calcium/sodium:proton antiporter gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3248 N840_3249 N840_3249 kdsD kdsD 3341952 3342938 + D-arabinose 5-phosphate isomerase putative isomerase gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3249 N840_3250 N840_3250 kdsC kdsC 3342959 3343525 + 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3250 N840_3251 N840_3251 lptC lptC 3343522 3344097 + lipopolysaccharide export%2C IM-tethered periplasmic protein of the LptBFGC export complex gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3251 N840_3252 N840_3252 lptA lptA 3344066 3344623 + periplasmic LPS-binding protein gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3252 N840_3253 N840_3253 lptB lptB 3344630 3345355 + lipopolysaccharide export ABC transporter ATP-binding protein of the LptBFGC export complex putative ATP-binding component of a transport system gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3253 N840_3254 N840_3254 rpoN rpoN 3345403 3346836 + RNA polymerase%2C sigma 54 (sigma N) factor RNA polymerase%2C sigma(54 or 60) factor%3B nitrogen and fermentation regulation gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3254 N840_3255 N840_3255 hpf hpf 3346859 3347146 + ribosome hibernation promoting factor HPF%3B stabilizes 70S dimers (100S) probable sigma-54 modulation protein gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3255 N840_3256 N840_3256 ptsN ptsN 3347264 3347755 + sugar-specific enzyme IIA component of PTS phosphotransferase system enzyme IIA%2C regulates N metabolism gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3256 N840_3257 N840_3257 yhbJ yhbJ 3347801 3348655 + glmZ(sRNA)-inactivating NTPase%2C glucosamine-6-phosphate regulated gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3257 N840_3258 N840_3258 npr npr 3348652 3348924 + phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) phosphocarrier protein HPr-like NPr%2C nitrogen related%2C exchanges phosphate with Enzyme I%2C Hpr gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3258 N840_3259 N840_3259 yrbL yrbL 3349138 3349770 + yrbL gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3259 N840_3260 N840_3260 mtgA mtgA 3349767 3350495 - biosynthetic peptidoglycan transglycosylase putative peptidoglycan enzyme gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3260 N840_3261 N840_3261 elbB elbB 3350492 3351145 - isoprenoid biosynthesis protein with amidotransferase-like domain sigma cross-reacting protein 27A (SCRP-27A) gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3261 N840_3262 N840_3262 arcZ arcZ 3351263 3351383 + sRNA positive antisense regulator of rpoS%3B binds Hfq identified in a large scale screen gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3262 N840_3263 N840_3263 arcB arcB 3351375 3353711 - aerobic respiration control sensor histidine protein kinase%2C cognate to two-component response regulators ArcA and RssB aerobic respiration sensor-response protein%3B histidine protein kinase/phosphatase%2C sensor for arcA gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3263 N840_3264 N840_3264 yhcC yhcC 3353807 3354736 - putative Fe-S oxidoreductase gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3264 N840_3265 N840_3265 gltB gltB 3355411 3359871 + glutamate synthase%2C large subunit gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3265 N840_3266 N840_3266 gltD gltD 3359884 3361302 + glutamate synthase%2C 4Fe-4S protein%2C small subunit glutamate synthase%2C small subunit gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3266 N840_3267 N840_3267 gltF gltF 3361862 3362626 + periplasmic protein regulator of gltBDF operon%2C induction of Ntr enzymes gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3267 N840_3268 N840_3268 yhcA yhcA 3362798 3363472 + putative periplasmic chaperone protein putative chaperone gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3268 N840_3269 N840_3269 yhcD yhcD 3363493 3365874 + putative outer membrane mbrial subunitusher protein putative outer membrane protein gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3269 N840_3270 N840_3270 yhcE yhcE 3365871 3367615 + putative protein%2C N-ter fragment (pseudogene)%3B interrupted by IS5 pseudogene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3270 N840_3271 N840_3271 insH1 insH1 3366388 3367404 - IS5 transposase and trans-activator gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3271 N840_3272 N840_3272 yhcF yhcF 3367612 3368328 + putative transcriptional regulator gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3272 N840_3273 N840_3273 yhcG yhcG 3368513 3369640 + yhcG gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3273 N840_3274 N840_3274 yhcH yhcH 3369700 3370164 - yhcH gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3274 N840_3275 N840_3275 nanK nanK 3370161 3371036 - N-acetylmannosamine kinase gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3275 N840_3276 N840_3276 nanE nanE 3371033 3371722 - putative N-acetylmannosamine-6-P epimerase gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3276 N840_3277 N840_3277 nanT nanT 3371770 3373260 - sialic acid transporter gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3277 N840_3278 N840_3278 nanA nanA 3373369 3374262 - N-acetylneuraminate lyase N-acetylneuraminate lyase (aldolase)%3B catabolism of sialic acid%3B not K-12? gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3278 N840_3279 N840_3279 nanR nanR 3374384 3375175 - DNA-binding transcriptional repressor of the nan operon%2C induced by sialic acid gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3279 N840_3280 N840_3280 dcuD dcuD 3375555 3376922 + putative transporter gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3280 N840_3281 N840_3281 sspB sspB 3376965 3377462 - ClpXP protease specificity enhancing factor stringent starvation protein B gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3281 N840_3282 N840_3282 sspA sspA 3377468 3378106 - stringent starvation protein A regulator of transcription%3B stringent starvation protein A gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3282 N840_3283 N840_3283 rpsI rpsI 3378501 3378893 - 30S ribosomal subunit protein S9 gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3283 N840_3284 N840_3284 rplM rplM 3378909 3379337 - 50S ribosomal subunit protein L13 gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3284 N840_3285 N840_3285 yhcM yhcM 3379556 3380683 - conserved protein with nucleoside triphosphate hydrolase domain gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3285 N840_3286 N840_3286 yhcB yhcB 3380877 3381275 + yhcB gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3286 N840_3287 N840_3287 degQ degQ 3381429 3382796 + serine endoprotease%2C periplasmic serine endoprotease gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3287 N840_3288 N840_3288 degS degS 3382886 3383953 + serine endoprotease%2C periplasmic protease gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3288 N840_3289 N840_3289 mdh mdh 3384016 3384954 - malate dehydrogenase%2C NAD(P)-binding protein malate dehydrogenase gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3289 N840_3290 N840_3290 argR argR 3385389 3385859 + DNA-binding transcriptional dual regulator%2C L-arginine-binding protein repressor of arg regulon%3B cer-mediated site specific recombination gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3290 N840_3291 N840_3291 yhcN yhcN 3386224 3386487 + yhcN gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3291 N840_3292 N840_3292 yhcO yhcO 3386543 3386815 - putative barnase inhibitor gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3292 N840_3293 N840_3293 aaeB aaeB 3386907 3388874 - p-hydroxybenzoic acid efflux system component gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3293 N840_3294 N840_3294 aaeA aaeA 3388880 3389812 - p-hydroxybenzoic acid efflux system component gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3294 N840_3295 N840_3295 aaeX aaeX 3389820 3390023 - membrane protein of efflux system gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3295 N840_3296 N840_3296 aaeR aaeR 3390206 3391135 + transcriptional regulator for aaeXAB operon gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3296 N840_3297 N840_3297 tldD tldD 3391269 3392714 - putative peptidase suppresses inhibitory activity of CsrA gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3297 N840_3298 N840_3298 yhdP yhdP 3393144 3396944 - conserved membrane protein%2C predicted transporter gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3298 N840_3299 N840_3299 rng rng 3397012 3398481 - ribonuclease G gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3299 N840_3300 N840_3300 yhdE yhdE 3398471 3399064 - Maf-like protein gene gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3300 N840_3301 N840_3301 mreD mreD 3399073 3399561 - cell wall structural complex MreBCD transmembrane component MreD rod shape-determining protein gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3301 N840_3302 N840_3302 mreC mreC 3399561 3400664 - cell wall structural complex MreBCD transmembrane component MreC rod shape-determining protein gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3302 N840_3303 N840_3303 mreB mreB 3400730 3401773 - cell wall structural complex MreBCD%2C actin-like component MreB regulator of ftsI%2C penicillin binding protein 3%2C septation function gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3303 N840_3304 N840_3304 csrD csrD 3402078 3404018 - targeting factor for csrBC sRNA degradation gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3304 N840_3305 N840_3305 acuI acuI 3404170 3405144 + putative acryloyl-CoA reductase putative dehydrogenase gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3305 N840_3306 N840_3306 yrdF yrdF 3405181 3405323 + pseudogene%2C conserved protein%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3306 N840_3307 N840_3307 yrdE yrdE 3405324 3405717 + pseudogene%2C yedZ paralog%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3307 N840_3308 N840_3308 accB accB 3406122 3406592 + acetyl CoA carboxylase%2C BCCP subunit acetylCoA carboxylase%2C BCCP subunit%3B carrier of biotin gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3308 N840_3309 N840_3309 accC accC 3406603 3407952 + acetyl-CoA carboxylase%2C biotin carboxylase subunit acetyl CoA carboxylase%2C biotin carboxylase subunit gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3309 N840_3310 N840_3310 yhdT yhdT 3408061 3408303 + conserved inner membrane protein gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3310 N840_3311 N840_3311 panF panF 3408293 3409744 + pantothenate:sodium symporter sodium/pantothenate symporter gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3311 N840_3312 N840_3312 prmA prmA 3409756 3410637 + methyltransferase for 50S ribosomal subunit protein L11 gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3312 N840_3313 N840_3313 dusB dusB 3410966 3411931 + tRNA-dihydrouridine synthase B putative dehydrogenase gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3313 N840_3314 N840_3314 fis fis 3411957 3412253 + global DNA-binding transcriptional dual regulator site-specific DNA inversion stimulation factor%3B DNA-binding protein%3B a trans activator for transcription gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3314 N840_3315 N840_3315 yhdJ yhdJ 3412339 3413223 + DNA adenine methyltransferase%2C SAM-dependent putative methyltransferase gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3315 N840_3316 N840_3316 yhdU yhdU 3413307 3413486 + putative membrane protein gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3316 N840_3317 N840_3317 envR envR 3413489 3414151 - DNA-binding transcriptional regulator putative transcriptional regulator gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3317 N840_3318 N840_3318 acrE acrE 3414550 3415707 + cytoplasmic membrane lipoprotein transmembrane protein affects septum formation and cell membrane permeability gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3318 N840_3319 N840_3319 acrF acrF 3415719 3418823 + multidrug efflux system protein integral transmembrane protein%3B acridine resistance gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3319 N840_3320 N840_3320 yhdV yhdV 3419076 3419297 + putative outer membrane protein gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3320 N840_3321 N840_3321 yhdW yhdW 3419728 3420752 + pseudogene%2C amino-acid transporter homology%3Bputative transport%3B Not classified%3B putative periplasmic binding transport protein%3B periplasmic-binding component of ABC superfamily pseudogene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3321 N840_3322 N840_3322 yhdX yhdX 3420820 3422001 + putative amino-acid transporter subunit putative transport system permease protein%3B membrane component of ABC superfamily gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3322 N840_3323 N840_3323 yhdY yhdY 3422011 3423114 + putative amino-acid transporter subunit putative transport system permease protein%3B membrane component of ABC superfamily gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3323 N840_3324 N840_3324 yhdZ yhdZ 3423122 3423880 + putative amino-acid transporter subunit putative ATP-binding component of a transport system%3B ATP-binding component of ABC superfamily gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3324 N840_3325 N840_3325 rrfF rrfF 3424109 3424228 - 5S ribosomal RNA rRNA gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3325 N840_3326 N840_3326 thrV thrV 3424266 3424341 - tRNA-Thr anticodon: GGU tRNA gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3326 N840_3327 N840_3327 rrfD rrfD 3424354 3424473 - 5S ribosomal RNA rRNA gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3327 N840_3328 N840_3328 rrlD rrlD 3424566 3427469 - 23S ribosomal RNA rRNA gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3328 N840_3329 N840_3329 alaU alaU 3427644 3427719 - tRNA-Ala anticodon: UGC tRNA gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3329 N840_3330 N840_3330 ileU ileU 3427762 3427838 - tRNA-Ile anticodon: GAU tRNA gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3330 N840_3331 N840_3331 rrsD rrsD 3427907 3429448 - 16S ribosomal RNA rRNA gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3331 N840_3332 N840_3332 yrdA yrdA 3429922 3430476 + yrdA putative transferase gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3332 N840_3333 N840_3333 yrdB yrdB 3430452 3430709 - yrdB gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3333 N840_3334 N840_3334 aroE aroE 3430706 3431524 - dehydroshikimate reductase%2C NAD(P)-binding protein dehydroshikimate reductase gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3334 N840_3335 N840_3335 tsaC tsaC 3431529 3432101 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein%2C threonine-dependent ADP-forming ATPase gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3335 N840_3336 N840_3336 yrdD yrdD 3432106 3432648 - putative DNA topoisomerase gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3336 N840_3337 N840_3337 smg smg 3432677 3433150 - smg gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3337 N840_3338 N840_3338 smf smf 3433122 3434246 - smf gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3338 N840_3339 N840_3339 def def 3434376 3434885 + peptide deformylase gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3339 N840_3340 N840_3340 fmt fmt 3434900 3435847 + 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3340 N840_3341 N840_3341 rsmB rsmB 3435893 3437182 + 16S rRNA m(5)C967 methyltransferase%2C SAM-dependent 16S rRNA m5C967 methyltransferase gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3341 N840_3342 N840_3342 trkA trkA 3437204 3438580 + NAD-binding component of TrK potassium transporter transport of potassium gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3342 N840_3343 N840_3343 mscL mscL 3438710 3439120 + mechanosensitive channel protein%2C high conductance gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3343 N840_3344 N840_3344 arfA arfA 3439117 3439335 - alternate ribosome-rescue factor A gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3344 N840_3345 N840_3345 zntR zntR 3439391 3439816 - DNA-binding transcriptional activator in response to Zn(II) gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3345 N840_3346 N840_3346 yhdN yhdN 3439827 3440195 - conserved protein%2C DUF1992 family gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3346 N840_3347 N840_3347 rplQ rplQ 3440302 3440685 - 50S ribosomal subunit protein L17 gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3347 N840_3348 N840_3348 rpoA rpoA 3440726 3441715 - RNA polymerase%2C alpha subunit gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3348 N840_3349 N840_3349 rpsD rpsD 3441741 3442361 - 30S ribosomal subunit protein S4 gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3349 N840_3350 N840_3350 rpsK rpsK 3442395 3442784 - 30S ribosomal subunit protein S11 gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3350 N840_3351 N840_3351 rpsM rpsM 3442801 3443157 - 30S ribosomal subunit protein S13 gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3351 N840_3352 N840_3352 rpmJ rpmJ 3443304 3443420 - 50S ribosomal subunit protein L36 gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3352 N840_3353 N840_3353 secY secY 3443452 3444783 - preprotein translocase membrane subunit putative ATPase subunit of translocase gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3353 N840_3354 N840_3354 rplO rplO 3444791 3445225 - 50S ribosomal subunit protein L15 gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3354 N840_3355 N840_3355 rpmD rpmD 3445229 3445408 - 50S ribosomal subunit protein L30 gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3355 N840_3356 N840_3356 rpsE rpsE 3445412 3445915 - 30S ribosomal subunit protein S5 gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3356 N840_3357 N840_3357 rplR rplR 3445930 3446283 - 50S ribosomal subunit protein L18 gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3357 N840_3358 N840_3358 rplF rplF 3446293 3446826 - 50S ribosomal subunit protein L6 gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3358 N840_3359 N840_3359 rpsH rpsH 3446839 3447231 - 30S ribosomal subunit protein S8 30S ribosomal subunit protein S8%2C and regulator gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3359 N840_3360 N840_3360 rpsN rpsN 3447265 3447570 - 30S ribosomal subunit protein S14 gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3360 N840_3361 N840_3361 rplE rplE 3447585 3448124 - 50S ribosomal subunit protein L5 gene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3361 N840_3362 N840_3362 rplX rplX 3448139 3448453 - 50S ribosomal subunit protein L24 gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3362 N840_3363 N840_3363 rplN rplN 3448464 3448835 - 50S ribosomal subunit protein L14 gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3363 N840_3364 N840_3364 rpsQ rpsQ 3449000 3449254 - 30S ribosomal subunit protein S17 gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3364 N840_3365 N840_3365 rpmC rpmC 3449254 3449445 - 50S ribosomal subunit protein L29 gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3365 N840_3366 N840_3366 rplP rplP 3449445 3449855 - 50S ribosomal subunit protein L16 gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3366 N840_3367 N840_3367 rpsC rpsC 3449868 3450569 - 30S ribosomal subunit protein S3 gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3367 N840_3368 N840_3368 rplV rplV 3450587 3450919 - 50S ribosomal subunit protein L22 gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3368 N840_3369 N840_3369 rpsS rpsS 3450934 3451212 - 30S ribosomal subunit protein S19 gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3369 N840_3370 N840_3370 rplB rplB 3451229 3452050 - 50S ribosomal subunit protein L2 gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3370 N840_3371 N840_3371 rplW rplW 3452068 3452370 - 50S ribosomal subunit protein L23 gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3371 N840_3372 N840_3372 rplD rplD 3452367 3452972 - 50S ribosomal subunit protein L4 50S ribosomal subunit protein L4%2C regulates expression of S10 operon gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3372 N840_3373 N840_3373 rplC rplC 3452983 3453612 - 50S ribosomal subunit protein L3 gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3373 N840_3374 N840_3374 rpsJ rpsJ 3453645 3453956 - 30S ribosomal subunit protein S10 gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3374 N840_3375 N840_3375 gspB gspB 3454194 3454613 - part of gsp divergon involved in type II protein secretion calcium-binding protein required for initiation of chromosome replication gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3375 N840_3376 N840_3376 gspA gspA 3454615 3456084 - general secretory pathway component%2C cryptic putative export protein A for general secretion pathway (GSP) gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3376 N840_3377 N840_3377 gspC gspC 3456264 3457079 + general secretory pathway component%2C cryptic gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3377 N840_3378 N840_3378 gspD gspD 3457063 3459015 + general secretory pathway component%2C cryptic gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3378 N840_3379 N840_3379 gspE gspE 3459025 3460506 + general secretory pathway component%2C cryptic gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3379 N840_3380 N840_3380 gspF gspF 3460503 3461699 + general secretory pathway component%2C cryptic gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3380 N840_3381 N840_3381 gspG gspG 3461709 3462146 + pseudopilin%2C cryptic%2C general secretion pathway gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3381 N840_3382 N840_3382 gspH gspH 3462154 3462663 + putative general secretory pathway component%2C cryptic gene gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3382 N840_3383 N840_3383 gspI gspI 3462660 3463037 + general secretory pathway component%2C cryptic gene gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3383 N840_3384 N840_3384 gspJ gspJ 3463030 3463617 + putative general secretory pathway component%2C cryptic gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3384 N840_3385 N840_3385 gspK gspK 3463610 3464593 + general secretory pathway component%2C cryptic gene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3385 N840_3386 N840_3386 gspL gspL 3464608 3465771 + general secretory pathway component%2C cryptic gene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3386 N840_3387 N840_3387 gspM gspM 3465768 3466229 + general secretory pathway component%2C cryptic gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3387 N840_3388 N840_3388 gspO gspO 3466229 3466906 + bifunctional prepilin leader peptidase/ methylase gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3388 N840_3389 N840_3389 bfr bfr 3466935 3467411 - bacterioferritin%2C iron storage and detoxification protein bacterioferrin%2C an iron storage homoprotein gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3389 N840_3390 N840_3390 bfd bfd 3467483 3467677 - bacterioferritin-associated ferredoxin gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3390 N840_3391 N840_3391 chiA chiA 3467846 3470539 - periplasmic endochitinase gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3391 N840_3392 N840_3392 tufA tufA 3470831 3472015 - protein chain elongation factor EF-Tu (duplicate of tufB) gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3392 N840_3393 N840_3393 fusA fusA 3472086 3474200 - protein chain elongation factor EF-G%2C GTP-binding protein GTP-binding protein chain elongation factor EF-G gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3393 N840_3394 N840_3394 rpsG rpsG 3474228 3474767 - 30S ribosomal subunit protein S7 30S ribosomal subunit protein S7%2C initiates assembly gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3394 N840_3395 N840_3395 rpsL rpsL 3474864 3475238 - 30S ribosomal subunit protein S12 gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3395 N840_3396 N840_3396 tusB tusB 3475364 3475651 - protein required for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3396 N840_3397 N840_3397 tusC tusC 3475659 3476018 - protein required for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3397 N840_3398 N840_3398 tusD tusD 3476018 3476404 - sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3398 N840_3399 N840_3399 yheO yheO 3476404 3477126 - yheO gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3399 N840_3400 N840_3400 fkpA fkpA 3477293 3478105 - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) gene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3400 N840_3401 N840_3401 slyX slyX 3478326 3478544 + protein required for phi X174 lysis host factor for lysis of phiX174 infection gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3401 N840_3402 N840_3402 slyD slyD 3478593 3479183 - FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3402 N840_3403 N840_3403 yheV yheV 3479278 3479478 - yheV gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3403 N840_3404 N840_3404 kefB kefB 3479488 3481293 - potassium:proton antiporter K+ efflux%3B NEM-activable K+/H+ antiporter gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3404 N840_3405 N840_3405 kefG kefG 3481293 3481847 - potassium-efflux system ancillary protein for KefB%2C glutathione-regulated putative NAD(P)H oxidoreductase gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3405 N840_3406 N840_3406 yheS yheS 3481975 3483888 + fused predicted transporter subunits of ABC superfamily: ATP-binding components putative ATP-binding component of a transport system gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3406 N840_3407 N840_3407 yheT yheT 3483888 3484910 + putative hydrolase gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3407 N840_3408 N840_3408 yheU yheU 3484904 3485122 + yheU gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3408 N840_3409 N840_3409 prkB prkB 3485176 3486045 + putative phosphoribulokinase probable phosphoribulokinase gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3409 N840_3410 N840_3410 yhfA yhfA 3486100 3486504 - conserved protein%2C OsmC family gene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3410 N840_3411 N840_3411 crp crp 3486806 3487438 + DNA-binding transcriptional dual regulator cyclic AMP receptor protein gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3411 N840_3412 N840_3412 yhfK yhfK 3487477 3489579 + conserved inner membrane protein gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3412 N840_3413 N840_3413 argD argD 3489646 3490866 - bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase acetylornithine delta-aminotransferase gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3413 N840_3414 N840_3414 pabA pabA 3490952 3491515 - aminodeoxychorismate synthase%2C subunit II p-aminobenzoate synthetase%2C component II gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3414 N840_3415 N840_3415 fic fic 3491547 3492149 - stationary-phase adenosine monophosphate-protein transferase domain protein induced in stationary phase%2C recognized by rpoS%2C affects cell division gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3415 N840_3416 N840_3416 yhfG yhfG 3492139 3492306 - putative Fic-binding protein gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3416 N840_3417 N840_3417 ppiA ppiA 3492411 3492983 - peptidyl-prolyl cis-trans isomerase A (rotamase A) gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3417 N840_3418 N840_3418 tsgA tsgA 3493254 3494435 + putative transporter putative transport gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3418 N840_3419 N840_3419 nirB nirB 3494697 3497240 + nitrite reductase%2C large subunit%2C NAD(P)H-binding protein nitrite reductase (NAD(P)H) subunit gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3419 N840_3420 N840_3420 nirD nirD 3497237 3497563 + nitrite reductase%2C NAD(P)H-binding%2C small subunit nitrite reductase (NAD(P)H) subunit gene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3420 N840_3421 N840_3421 nirC nirC 3497689 3498495 + nitrite transporter nitrite reductase activity gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3421 N840_3422 N840_3422 cysG cysG 3498514 3499887 + fused siroheme synthase 1%2C3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase uroporphyrinogen III methylase%3B sirohaeme biosynthesis gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3422 N840_3423 N840_3423 yhfL yhfL 3500134 3500301 + small lipoprotein gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3423 N840_3424 N840_3424 frlA frlA 3500596 3501933 + putative fructoselysine transporter putative amino acid/amine transport protein gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3424 N840_3425 N840_3425 frlB frlB 3501954 3502976 + fructoselysine-6-P-deglycase putative transport protein gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3425 N840_3426 N840_3426 frlC frlC 3503026 3503856 + fructoselysine 3-epimerase putative fructoselysine or fructoselysine 6-P isomerase gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3426 N840_3427 N840_3427 frlD frlD 3503853 3504638 + fructoselysine 6-kinase putative kinase gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3427 N840_3428 N840_3428 frlR frlR 3504738 3505469 + putative DNA-binding transcriptional regulator putative transcriptional regulator gene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3428 N840_3429 N840_3429 yhfS yhfS 3505621 3506706 - yhfS gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3429 N840_3430 N840_3430 yhfT yhfT 3506718 3508022 - putative inner membrane protein putative transport system permease protein gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3430 N840_3431 N840_3431 yhfU yhfU 3508034 3508387 - yhfU gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3431 N840_3432 N840_3432 php php 3508398 3509275 - Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3432 N840_3433 N840_3433 yhfW yhfW 3509272 3510498 - putative mutase gene gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3433 N840_3434 N840_3434 yhfX yhfX 3510498 3511661 - putative amino acid racemase gene gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3434 N840_3435 N840_3435 yhfY yhfY 3511745 3512107 - yhfY gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3435 N840_3436 N840_3436 yhfZ yhfZ 3512124 3513030 - Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3436 N840_3437 N840_3437 trpS trpS 3513320 3514324 - tryptophanyl-tRNA synthetase tryptophan tRNA synthetase gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3437 N840_3438 N840_3438 gph gph 3514317 3515075 - phosphoglycolate phosphatase gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3438 N840_3439 N840_3439 rpe rpe 3515068 3515745 - D-ribulose-5-phosphate 3-epimerase gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3439 N840_3440 N840_3440 dam dam 3515763 3516599 - DNA adenine methyltransferase gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3440 N840_3441 N840_3441 damX damX 3516706 3517992 - cell division protein that binds to the septal ring putative membrane protein%3B interferes with cell division gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3441 N840_3442 N840_3442 aroB aroB 3518084 3519172 - 3-dehydroquinate synthase gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3442 N840_3443 N840_3443 aroK aroK 3519229 3519750 - shikimate kinase I gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3443 N840_3444 N840_3444 hofQ hofQ 3520151 3521389 - protein required for the utilization of DNA as a carbon source putative transport portein gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3444 N840_3445 N840_3445 hofP hofP 3521301 3521705 - protein required for the utilization of DNA as a carbon source gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3445 N840_3446 N840_3446 hofO hofO 3521695 3522135 - protein required for the utilization of DNA as a carbon source gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3446 N840_3447 N840_3447 hofN hofN 3522119 3522658 - protein required for the utilization of DNA as a carbon source gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3447 N840_3448 N840_3448 hofM hofM 3522658 3523437 - protein required for the utilization of DNA as a carbon source%2C pilus assembly protein-like protein gene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3448 N840_3449 N840_3449 mrcA mrcA 3523557 3526109 + fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase peptidoglycan synthetase%3B penicillin-binding protein 1A gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3449 N840_3450 N840_3450 nudE nudE 3526275 3526835 - adenosine nucleotide hydrolase%3B substrates include Ap3A%2C Ap2A%2C ADP-ribose%2C NADH gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3450 N840_3451 N840_3451 yrfF yrfF 3527155 3529290 + inner membrane protein putative dehydrogenase gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3451 N840_3452 N840_3452 yrfG yrfG 3529355 3530023 + GMP/IMP nucleotidase putative phosphatase gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3452 N840_3453 N840_3453 hslR hslR 3530034 3530435 + ribosome-associated heat shock protein Hsp15 gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3453 N840_3454 N840_3454 hslO hslO 3530460 3531338 + heat shock protein Hsp33 gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3454 N840_3455 N840_3455 yhgE yhgE 3531401 3533125 - putative inner membrane protein putative transport gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3455 N840_3456 N840_3456 pck pck 3533504 3535126 + phosphoenolpyruvate carboxykinase gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3456 N840_3457 N840_3457 envZ envZ 3535202 3536554 - sensory histidine kinase in two-component regulatory system with OmpR protein histidine kinase/phosphatase sensor for OmpR%2C modulates expression of ompF and ompC gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3457 N840_3458 N840_3458 ompR ompR 3536551 3537270 - DNA-binding response regulator in two-component regulatory system with EnvZ response regulator (sensor%2C EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3458 N840_3459 N840_3459 greB greB 3537498 3537974 + transcript cleavage factor transcription elongation factor and transcript cleavage gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3459 N840_3460 N840_3460 yhgF yhgF 3538071 3540392 + putative transcriptional accessory protein gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3460 N840_3461 N840_3461 feoA feoA 3540849 3541076 + ferrous iron transporter%2C protein A ferrous iron transport protein A gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3461 N840_3462 N840_3462 feoB feoB 3541093 3543414 + fused ferrous iron transporter%2C protein B: GTP-binding protein/membrane protein ferrous iron transport protein B gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3462 N840_3463 N840_3463 feoC feoC 3543414 3543650 + putative DNA-binding transcriptional regulator gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3463 N840_3464 N840_3464 yhgA yhgA 3543853 3544731 + putative transposase gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3464 N840_3465 N840_3465 bioH bioH 3544760 3545530 - pimeloyl-ACP carboxylesterase biotin biosynthesis%3B reaction prior to pimeloyl CoA gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3465 N840_3466 N840_3466 gntX gntX 3545568 3546251 + protein required for the utilization of DNA as a carbon source gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3466 N840_3467 N840_3467 nfuA nfuA 3546310 3546885 + Fe/S biogenesis protein%3B possible scaffold/chaperone for damaged Fe/S proteins gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3467 N840_3468 N840_3468 gntT gntT 3547245 3548561 + gluconate transporter%2C high-affinity GNT I system high-affinity transport of gluconate / gluconate permease gene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3468 N840_3469 N840_3469 malQ malQ 3548672 3550756 - 4-alpha-glucanotransferase (amylomaltase) gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3469 N840_3470 N840_3470 malP malP 3550766 3553159 - maltodextrin phosphorylase gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3470 N840_3471 N840_3471 malT malT 3553771 3556476 + DNA-binding transcriptional activator for the mal regulon and maltotriose-ATP-binding protein positive regulator of mal regulon gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3471 N840_3472 N840_3472 rtcA rtcA 3556519 3557535 - RNA 3'-terminal phosphate cyclase gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3472 N840_3473 N840_3473 rtcB rtcB 3557539 3558765 - rtcB gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3473 N840_3474 N840_3474 rtcR rtcR 3558954 3560552 + sigma 54-dependent transcriptional regulator of rtcBA expression sigma54-dependent regulator of rtcBA expression gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3474 N840_3475 N840_3475 glpR glpR 3560534 3561292 - DNA-binding transcriptional repressor repressor of the glp operon gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3475 N840_3476 N840_3476 glpG glpG 3561309 3562139 - rhomboid intramembrane serine protease protein of glp regulon gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3476 N840_3477 N840_3477 glpE glpE 3562184 3562510 - thiosulfate:cyanide sulfurtransferase (rhodanese) rhodanese (thiosulfate:cyanide sulfertransferase) gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3477 N840_3478 N840_3478 glpD glpD 3562700 3564205 + sn-glycerol-3-phosphate dehydrogenase%2C aerobic%2C FAD/NAD(P)-binding protein sn-glycerol-3-phosphate dehydrogenase (aerobic) gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3478 N840_3479 N840_3479 yzgL yzgL 3564474 3564692 - pseudogene%2C periplasmic solute binding protein homology%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3479 N840_3480 N840_3480 glgP glgP 3564821 3567268 - glycogen phosphorylase gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3480 N840_3481 N840_3481 glgA glgA 3567287 3568720 - glycogen synthase gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3481 N840_3482 N840_3482 glgC glgC 3568720 3570015 - glucose-1-phosphate adenylyltransferase gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3482 N840_3483 N840_3483 glgX glgX 3570033 3572006 - glycogen debranching enzyme part of glycogen operon%2C a glycosyl hydrolase%2C debranching enzyme gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3483 N840_3484 N840_3484 glgB glgB 3572003 3574189 - 1%2C4-alpha-glucan branching enzyme gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3484 N840_3485 N840_3485 asd asd 3574462 3575565 - aspartate-semialdehyde dehydrogenase%2C NAD(P)-binding protein aspartate-semialdehyde dehydrogenase gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3485 N840_3486 N840_3486 yhgN yhgN 3575758 3576351 + putative antibiotic transporter gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3486 N840_3487 N840_3487 gntU gntU 3576408 3577748 - gluconate transporter%2C low affinity GNT 1 system split gene%2C low-affinity gluconate transport permease protein in GNT I system gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3487 N840_3488 N840_3488 gntK gntK 3577752 3578279 - gluconate kinase 2 gluconokinase 2%2C thermoresistant%3B gluconate transport%2C GNT I system gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3488 N840_3489 N840_3489 gntR gntR 3578418 3579413 - DNA-binding transcriptional repressor regulator of gluconate (gnt) operon gene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3489 N840_3490 N840_3490 yhhW yhhW 3579637 3580332 - quercetinase activity in vitro gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3490 N840_3491 N840_3491 yhhX yhhX 3580455 3581492 - putative oxidoreductase with NAD(P)-binding Rossmann-fold domain putative regulator gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3491 N840_3492 N840_3492 ryhB ryhB 3581614 3581703 - sRNA antisense regulator mediating positive Fur regulon response%2C Hfq-dependent%3B global iron regulator Fur represses this inhibitory RNA%2C relieving acnA%2C fumA%2C sdhCDAB%2C bfr%2C ftnA%2C and sodB from RyhB-mediated repression%3B gvcB is regulated by gcvA and gcvR gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3492 N840_3493 N840_3493 yhhY yhhY 3581825 3582313 + putative acetyltransferase gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3493 N840_3494 N840_3494 yhhZ yhhZ 3582550 3583728 + yhhZ gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3494 N840_3495 N840_3495 yrhA yrhA 3583725 3584996 + pseudogene%2C interrupted by IS1E pseudogene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3495 N840_3496 N840_3496 insA insA 3584170 3584445 + IS1 repressor TnpA insA5 gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3496 N840_3497 N840_3497 insB1 insB1 3584364 3584867 + IS1 transposase B gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3497 N840_3498 N840_3498 yrhD yrhD 3585091 3585246 + yrhD gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3498 N840_3499 N840_3499 yrhB yrhB 3585446 3585730 + stable heat shock chaperone gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3499 N840_3500 N840_3500 ggt ggt 3585768 3587510 - gamma-glutamyltranspeptidase gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3500 N840_3501 N840_3501 yhhA yhhA 3587630 3588070 + conserved protein%2C DUF2756 family gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3501 N840_3502 N840_3502 ugpQ ugpQ 3588057 3588800 - glycerophosphodiester phosphodiesterase%2C cytosolic gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3502 N840_3503 N840_3503 ugpC ugpC 3588797 3589867 - glycerol-3-phosphate transporter subunit ATP-binding component of sn-glycerol 3-phosphate transport system gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3503 N840_3504 N840_3504 ugpE ugpE 3589869 3590714 - glycerol-3-phosphate transporter subunit sn-glycerol 3-phosphate transport system%2C integral membrane protein%3B membrane component of ABC superfamily gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3504 N840_3505 N840_3505 ugpA ugpA 3590711 3591598 - glycerol-3-phosphate transporter subunit sn-glycerol 3-phosphate transport system%2C integral membrane protein%3B membrane component of ABC superfamily gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3505 N840_3506 N840_3506 ugpB ugpB 3591696 3593012 - glycerol-3-phosphate transporter subunit sn-glycerol 3-phosphate transport system%3B periplasmic binding protein%3B periplasmic-binding component of ABC superfamily gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3506 N840_3507 N840_3507 livF livF 3593411 3594124 - leucine/isoleucine/valine transporter subunit ATP-binding component of leucine transport gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3507 N840_3508 N840_3508 livG livG 3594126 3594893 - leucine/isoleucine/valine transporter subunit ATP-binding component of high-affinity branched-chain amino acid transport system gene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3508 N840_3509 N840_3509 livM livM 3594890 3596167 - leucine/isoleucine/valine transporter subunit high-affinity branched-chain amino acid transport%3B membrane component of ABC superfamily gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3509 N840_3510 N840_3510 livH livH 3596164 3597090 - leucine/isoleucine/valine transporter subunit high-affinity branched-chain amino acid transport system%3B membrane component%3B membrane component of ABC superfamily gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3510 N840_3511 N840_3511 livK livK 3597138 3598247 - leucine transporter subunit high-affinity leucine-specific transport system%3B periplasmic binding protein%3B periplasmic-binding component of ABC superfamily gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3511 N840_3512 N840_3512 panM panM 3598671 3599054 + PanD autocleavage accelerator%2C panothenate synthesis gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3512 N840_3513 N840_3513 livJ livJ 3599242 3600345 - high-affinity branched-chain amino acid transport protein (ABC superfamily%2C peri_bind)%3B periplasmic-binding component of ABC superfamily%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3513 N840_3514 N840_3514 rpoH rpoH 3600616 3601470 - RNA polymerase%2C sigma 32 (sigma H) factor RNA polymerase%2C sigma(32) factor%3B regulation of proteins induced at high temperatures gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3514 N840_3515 N840_3515 ftsX ftsX 3601715 3602773 - putative transporter subunit: membrane component of ABC superfamily cell division membrane protein gene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3515 N840_3516 N840_3516 ftsE ftsE 3602766 3603434 - putative transporter subunit: ATP-binding component of ABC superfamily ATP-binding component of a membrane-associated complex involved in cell division gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3516 N840_3517 N840_3517 ftsY ftsY 3603437 3604930 - Signal Recognition Particle (SRP) receptor cell division membrane protein gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3517 N840_3518 N840_3518 rsmD rsmD 3605080 3605676 + 16S rRNA m(2)G966 methyltransferase%2C SAM-dependent gene gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3518 N840_3519 N840_3519 yhhL yhhL 3605666 3605935 + conserved protein%2C DUF1145 family gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3519 N840_3520 N840_3520 yhhM yhhM 3605938 3606297 - conserved protein%2C DUF2500 family putative receptor gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3520 N840_3521 N840_3521 yhhN yhhN 3606438 3607064 + putative inner membrane protein%2C TMEM86 family putative enzyme gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3521 N840_3522 N840_3522 zntA zntA 3607138 3609336 + zinc%2C cobalt and lead efflux system zinc-transporting ATPase gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3522 N840_3523 N840_3523 tusA tusA 3609438 3609683 - sulfurtransferase required 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis small protein required for cell growth%3B affects RpoS stability%3B small ubiquitous RNA-binding protein required for normal growth%2C cytoplasmic gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3523 N840_3524 N840_3524 yhhQ yhhQ 3609904 3610569 + inner membrane protein%2C DUF165 family gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3524 N840_3525 N840_3525 dcrB dcrB 3610642 3611199 + periplasmic protein%2C predicted lipoprotein gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3525 N840_3526 N840_3526 yhhS yhhS 3611203 3612420 - putative arabinose efflux transporter putative transport gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3526 N840_3527 N840_3527 yhhT yhhT 3612552 3613601 + inner membrane protein%2C predicted membrane permease%2C UPF0118 family gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3527 N840_3528 N840_3528 acpT acpT 3613656 3614243 + holo-(acyl carrier protein) synthase 2 gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3528 N840_3529 N840_3529 nikA nikA 3614354 3615928 + nickel-binding%2C heme-binding periplasmic protein periplasmic binding protein for nickel%3B periplasmic-binding component of ABC superfamily gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3529 N840_3530 N840_3530 nikB nikB 3615928 3616872 + nickel transporter subunit transport of nickel%2C membrane protein%3B membrane component of ABC superfamily gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3530 N840_3531 N840_3531 nikC nikC 3616869 3617702 + nickel transporter subunit transport of nickel%2C membrane protein%3B membrane component of ABC superfamily gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3531 N840_3532 N840_3532 nikD nikD 3617702 3618466 + nickel transporter subunit ATP-binding protein of nickel transport system%3B ATP-binding component of ABC superfamily gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3532 N840_3533 N840_3533 nikE nikE 3618463 3619269 + nickel transporter subunit ATP-binding protein of nickel transport system%3B ATP-binding component of ABC superfamily gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3533 N840_3534 N840_3534 nikR nikR 3619275 3619676 + DNA-binding transcriptional repressor%2C Ni-binding protein gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3534 N840_3535 N840_3535 rhsB rhsB 3619879 3624114 + rhsB element core protein RshB rhsB protein in rhs element gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3535 N840_3536 N840_3536 yhhH yhhH 3624086 3624469 + yhhH gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3536 N840_3537 N840_3537 yrhC yrhC 3624574 3624924 + putative protein fragment (pseudogene)%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3537 N840_3538 N840_3538 yhhI yhhI 3625065 3626201 + putative transposase putative receptor gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3538 N840_3539 N840_3539 yhhJ yhhJ 3626366 3627490 - putative permease subunit%2C ABC transporter superfamily%2C inner membrane protein putative transporter gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3539 N840_3540 N840_3540 rbbA rbbA 3627490 3630225 - fused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane protein ribosome-associated ATPase%2C ATP-binding domain (N-terminal) gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3540 N840_3541 N840_3541 yhiI yhiI 3630222 3631289 - putative membrane fusion protein (MFP) of efflux pump putative membrane protein gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3541 N840_3542 N840_3542 yhiJ yhiJ 3631655 3633277 - yhiJ gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3542 N840_3543 N840_3543 yhiL yhiL 3633539 3635145 - pseudogene pseudogene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3543 N840_3544 N840_3544 yhiM yhiM 3635528 3636580 + acid resistance protein%2C inner membrane gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3544 N840_3545 N840_3545 yhiN yhiN 3636895 3638097 - putative oxidoreductase with FAD/NAD(P)-binding domain gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3545 N840_3546 N840_3546 pitA pitA 3638329 3639828 + phosphate transporter%2C low-affinity%3B tellurite importer low-affinity phosphate transport gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3546 N840_3547 N840_3547 uspB uspB 3640072 3640407 - universal stress (ethanol tolerance) protein B gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3547 N840_3548 N840_3548 uspA uspA 3640798 3641232 + universal stress global response regulator universal stress protein%3B broad regulatory function? gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3548 N840_3549 N840_3549 dtpB dtpB 3641549 3643018 + dipeptide and tripeptide permease B putative transport protein gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3549 N840_3550 N840_3550 rsmJ rsmJ 3643067 3643819 - 16S rRNA m(2)G1516 methyltransferase%2C SAM-dependent gene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3550 N840_3551 N840_3551 prlC prlC 3643827 3645869 - oligopeptidase A gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3551 N840_3552 N840_3552 rlmJ rlmJ 3646072 3646914 + 23S rRNA m(6)A2030 methyltransferase%2C SAM-dependent gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3552 N840_3553 N840_3553 gor gor 3646986 3648338 + glutathione oxidoreductase gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3553 N840_3554 N840_3554 dinQ dinQ 3648392 3648520 - damage inducible protein gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3554 N840_3555 N840_3555 arsR arsR 3649215 3649568 + DNA-binding transcriptional repressor transcriptional repressor of chromosomal ars operon gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3555 N840_3556 N840_3556 arsB arsB 3649622 3650911 + arsenite/antimonite transporter arsenical pump membrane protein gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3556 N840_3557 N840_3557 arsC arsC 3650924 3651349 + arsenate reductase gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3557 N840_3558 N840_3558 yhiS yhiS 3651978 3654400 + pseudogene pseudogene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3558 N840_3559 N840_3559 insH1 insH1 3652869 3653885 - IS5 transposase and trans-activator gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3559 N840_3560 N840_3560 slp slp 3654648 3655214 + outer membrane lipoprotein outer membrane protein induced after carbon starvation gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3560 N840_3561 N840_3561 dctR dctR 3655370 3655900 + putative DNA-binding transcriptional regulator gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3561 N840_3562 N840_3562 yhiD yhiD 3655942 3656589 - putative Mg(2+) transport ATPase%2C inner membrane protein putative transport ATPase gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3562 N840_3563 N840_3563 hdeB hdeB 3656653 3656979 - acid-resistance protein gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3563 N840_3564 N840_3564 hdeA hdeA 3657095 3657427 - stress response protein acid-resistance protein gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3564 N840_3565 N840_3565 hdeD hdeD 3657682 3658254 + acid-resistance membrane protein gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3565 N840_3566 N840_3566 arrS arrS 3658673 3658741 - antisense sRNA ArrS%2C function unknown gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3566 N840_3567 N840_3567 gadE gadE 3659053 3659580 + DNA-binding transcriptional activator gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3567 N840_3568 N840_3568 mdtE mdtE 3659919 3661076 + anaerobic multidrug efflux transporter%2C ArcA-regulated putative membrane protein gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3568 N840_3569 N840_3569 mdtF mdtF 3661101 3664214 + anaerobic multidrug efflux transporter%2C ArcA-regulated putative transport system permease protein gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3569 N840_3570 N840_3570 gadW gadW 3664577 3665305 - transcriptional activator of gadA and gadBC%3B repressor of gadX putative ARAC-type regulatory protein gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3570 N840_3571 N840_3571 gadY gadY 3665551 3665655 + sRNA antisense regulator of gadAB transcriptional activator GadX mRNA%2C Hfq-dependent identified in a large scale screen gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3571 N840_3572 N840_3572 gadX gadX 3665673 3666497 - DNA-binding transcriptional dual regulator gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3572 N840_3573 N840_3573 gadA gadA 3666867 3668267 - glutamate decarboxylase A%2C PLP-dependent glutamate decarboxylase isozyme gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3573 N840_3574 N840_3574 yhjA yhjA 3668478 3669875 - putative cytochrome C peroxidase gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3574 N840_3575 N840_3575 treF treF 3670279 3671928 + cytoplasmic trehalase gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3575 N840_3576 N840_3576 yhjB yhjB 3671979 3672581 - putative two-component system response regulator%2C LuxR-like HTH domain%2C function unknown putative regulator gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3576 N840_3577 N840_3577 yhjC yhjC 3673101 3674000 + putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3577 N840_3578 N840_3578 yhjD yhjD 3674049 3675062 + putative alternate lipid exporter%2C suppressor of msbA and KDO essentiality%2C inner membrane protein gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3578 N840_3579 N840_3579 yhjE yhjE 3675473 3676795 + inner membrane protein%2C predicted transporter putative transport protein gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3579 N840_3580 N840_3580 yhjG yhjG 3676977 3679037 - Inner membrane protein%2C AsmA family gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3580 N840_3581 N840_3581 yhjH yhjH 3679107 3679874 - cyclic-di-GMP phosphodiesterase%2C FlhDC-regulated gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3581 N840_3582 N840_3582 kdgK kdgK 3680106 3681035 + ketodeoxygluconokinase gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3582 N840_3583 N840_3583 yhjJ yhjJ 3681131 3682627 - putative zinc-dependent peptidase gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3583 N840_3584 N840_3584 dctA dctA 3682848 3684134 - C4-dicarboxylic acid%2C orotate and citrate transporter uptake of C4-dicarboxylic acids gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3584 N840_3585 N840_3585 yhjK yhjK 3684317 3686305 - cyclic-di-GMP phosphodiesterase gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3585 N840_3586 N840_3586 bcsC bcsC 3686387 3689860 - cellulose synthase subunit putative oxidoreductase subunit gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3586 N840_3587 N840_3587 bcsZ bcsZ 3689842 3690948 - endo-1%2C4-D-glucanase gene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3587 N840_3588 N840_3588 bcsB bcsB 3690955 3693294 - regulator of cellulose synthase%2C cyclic di-GMP binding protein gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3588 N840_3589 N840_3589 bcsA bcsA 3693305 3695923 - cellulose synthase%2C catalytic subunit putative cellulose synthase gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3589 N840_3590 N840_3590 bcsQ bcsQ 3695920 3696672 - involved in cellulose production%2C minD superfamily (pseudogene) pseudogene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3590 N840_3591 N840_3591 yhjR yhjR 3696684 3696872 - yhjR gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3591 N840_3592 N840_3592 bcsE bcsE 3697145 3698716 + cellulose production protein conserved hypothetical protein%3B Salmonella ortholog implicated in the biosynthesis of cellulose%2C although the precise role remains unclear gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3592 N840_3593 N840_3593 bcsF bcsF 3698713 3698904 + bcsF gene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3593 N840_3594 N840_3594 bcsG bcsG 3698901 3700580 + inner membrane protein%2C predicted endoglucanase%2C DUF3260 family gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3594 N840_3595 N840_3595 ldrD ldrD 3700667 3700774 - toxic polypeptide%2C small small toxic polypeptide gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3595 N840_3596 N840_3596 rdlD rdlD 3700823 3700888 + sRNA antisense regulator affects LdrD translation%3B proposed addiction module in LDR-D repeat%2C with toxic peptide LdrD antisense RNA%2C trans-acting regulator of ldrD translation gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3596 N840_3597 N840_3597 yhjV yhjV 3701250 3702521 + putative transporter putative transporter protein gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3597 N840_3598 N840_3598 dppF dppF 3702551 3703555 - dipeptide transporter putative ATP-binding component of dipeptide transport system gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3598 N840_3599 N840_3599 dppD dppD 3703552 3704535 - dipeptide/heme transporter putative ATP-binding component of dipeptide transport system gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3599 N840_3600 N840_3600 dppC dppC 3704546 3705448 - dipeptide/heme transporter dipeptide transport system permease protein 2%3B membrane component of ABC superfamily gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3600 N840_3601 N840_3601 dppB dppB 3705458 3706477 - dipeptide/heme transporter dipeptide transport system permease protein 1%3B membrane component of ABC superfamily gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3601 N840_3602 N840_3602 dppA dppA 3706785 3708392 - dipeptide transporter dipeptide transport protein%3B periplasmic-binding component of ABC superfamily gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3602 N840_3603 N840_3603 proK proK 3709303 3709379 - tRNA-Pro anticodon: CGG%3B proline tRNA1 tRNA gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3603 N840_3604 N840_3604 eptB eptB 3709471 3711163 - Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3604 N840_3605 N840_3605 yhjX yhjX 3711487 3712695 - inner membrane protein%2C predicted oxalate-formate antiporter putative resistance protein gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3605 N840_3606 N840_3606 yhjY yhjY 3712924 3713622 - yhjY putative lipase gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3606 N840_3607 N840_3607 tag tag 3713780 3714343 + 3-methyl-adenine DNA glycosylase I%2C constitutive gene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3607 N840_3608 N840_3608 yiaC yiaC 3714340 3714780 + putative acyltransferase with acyl-CoA N-acyltransferase domain gene gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3608 N840_3609 N840_3609 bisC bisC 3714749 3717082 - biotin sulfoxide reductase gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3609 N840_3610 N840_3610 yiaD yiaD 3717235 3717894 + multicopy suppressor of bamB%3B outer membrane lipoprotein putative outer membrane protein gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3610 N840_3611 N840_3611 ghrB ghrB 3717998 3718972 + glyoxylate/hydroxypyruvate reductase B gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3611 N840_3612 N840_3612 yiaF yiaF 3719022 3719732 - yiaF gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3612 N840_3613 N840_3613 yiaG yiaG 3720166 3720456 + putative transcriptional regulator%2C HTH_CROC1 family gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3613 N840_3614 N840_3614 cspA cspA 3720737 3720949 + RNA chaperone and anti-terminator%2C cold-inducible cold shock protein 7.4%2C transcriptional activator of hns gene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3614 N840_3615 N840_3615 mokA mokA 3721136 3721320 - pseudogene%2C overlapping regulatory peptide%2C enables hokB%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3615 N840_3616 N840_3616 hokA hokA 3721136 3721288 - toxic polypeptide%2C small small toxic membrane polypeptide%3B IS150 insertion and apparent 39 bp deletion disrupt the associated mokA and sokA genes gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3616 N840_3617 N840_3617 insJ insJ 3721368 3721889 + IS150 transposase A gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3617 N840_3618 N840_3618 insK insK 3721886 3722737 + IS150 transposase B gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3618 N840_3619 N840_3619 sokA sokA 3722764 3722793 + SokA pseudogene%2C sRNA antisense regulator blocking mokA/hokA translation pseudogene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3619 N840_3620 N840_3620 glyS glyS 3723016 3725085 - glycine tRNA synthetase%2C beta subunit gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3620 N840_3621 N840_3621 glyQ glyQ 3725095 3726006 - glycine tRNA synthetase%2C alpha subunit gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3621 N840_3622 N840_3622 ysaB ysaB 3726101 3726400 - ysaB gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3622 N840_3623 N840_3623 wecH wecH 3726575 3727570 + O-acetyltransferase for enterobacterial common antigen (ECA) gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3623 N840_3624 N840_3624 yiaA yiaA 3727612 3728049 - inner membrane protein%2C YiaAB family gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3624 N840_3625 N840_3625 yiaB yiaB 3728095 3728436 - inner membrane protein%2C YiaAB family gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3625 N840_3626 N840_3626 xylB xylB 3728605 3730060 - Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3626 N840_3627 N840_3627 xylA xylA 3730132 3731454 - D-xylose isomerase gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3627 N840_3628 N840_3628 xylF xylF 3731820 3732812 + D-xylose transporter subunit xylose binding protein transport system%3B periplasmic-binding component of ABC superfamily gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3628 N840_3629 N840_3629 xylG xylG 3732890 3734431 + fused D-xylose transporter subunits of ABC superfamily: ATP-binding components putative ATP-binding protein of xylose transport system gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3629 N840_3630 N840_3630 xylH xylH 3734409 3735590 + D-xylose ABC transporter permease subunit putative xylose transport%2C membrane component%3B membrane component of ABC superfamily gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3630 N840_3631 N840_3631 xylR xylR 3735668 3736846 + DNA-binding transcriptional activator%2C xylose-binding protein putative regulator of xyl operon gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3631 N840_3632 N840_3632 bax bax 3737043 3737867 - bax putative ATP-binding protein gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3632 N840_3633 N840_3633 malS malS 3738187 3740217 + alpha-amylase gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3633 N840_3634 N840_3634 avtA avtA 3740395 3741648 + valine-pyruvate aminotransferase 1 alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase%2C transaminase C gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3634 N840_3635 N840_3635 ysaA ysaA 3741799 3742272 - putative hydrogenase%2C 4Fe-4S ferredoxin-type component gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3635 N840_3636 N840_3636 yiaJ yiaJ 3742374 3743222 - DNA-binding transcriptional repressor of yiaK-S operon gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3636 N840_3637 N840_3637 yiaK yiaK 3744653 3745651 + 2%2C3-diketo-L-gulonate reductase%2C NADH-dependent putative dehydrogenase gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3637 N840_3638 N840_3638 yiaL yiaL 3745663 3746130 + yiaL putative lipase gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3638 N840_3639 N840_3639 yiaM yiaM 3746248 3746721 + L-dehydroascorbate transporter%2C TRAP permease small subunit for TRAP (TRipartite ATP-independent Periplasmic) family transporter YiaMNO gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3639 N840_3640 N840_3640 yiaN yiaN 3746724 3748001 + L-dehydroascorbate transporter%2C TRAP permease large subunit for TRAP (TRipartite ATP-independent Periplasmic) family transporter YiaMNO putative membrane protein gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3640 N840_3641 N840_3641 yiaO yiaO 3748014 3749000 + L-dehydroascorbate transporter%2C periplasmic binding protein for TRAP (TRipartite ATP-independent Periplasmic) family transporter YiaMNO putative solute-binding transport protein gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3641 N840_3642 N840_3642 lyxK lyxK 3749004 3750500 + L-xylulose kinase L-xylulose kinase%2C cryptic gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3642 N840_3643 N840_3643 yiaQ yiaQ 3750497 3751159 + 3-keto-L-gulonate 6-phosphate decarboxylase probable 3-hexulose 6-phosphate synthase gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3643 N840_3644 N840_3644 yiaR yiaR 3751152 3752012 + putative L-xylulose 5-phosphate 3-epimerase gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3644 N840_3645 N840_3645 yiaS yiaS 3752006 3752701 + L-ribulose-5-phosphate 4-epimerase gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3645 N840_3646 N840_3646 ysaC ysaC 3752733 3752834 - pseudogene%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3646 N840_3647 N840_3647 ysaD ysaD 3752838 3753029 + pseudogene%2C internal sequence remnant%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3647 N840_3648 N840_3648 yiaT yiaT 3753048 3753788 - putative outer membrane protein gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3648 N840_3649 N840_3649 yiaU yiaU 3753912 3754886 + putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3649 N840_3650 N840_3650 yiaV yiaV 3754883 3756019 - membrane fusion protein (MFP) component of efflux pump%2C signal anchor putative membrane protein gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3650 N840_3651 N840_3651 yiaW yiaW 3756025 3756348 - inner membrane protein%2C DUF3302 family gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3651 N840_3652 N840_3652 aldB aldB 3756893 3758431 - aldehyde dehydrogenase B aldehyde dehydrogenase B (lactaldehyde dehydrogenase) gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3652 N840_3653 N840_3653 yiaY yiaY 3758596 3759747 - putative Fe-containing alcohol dehydrogenase%2C Pfam00465 family putative oxidoreductase gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3653 N840_3654 N840_3654 selB selB 3759937 3761781 - selenocysteinyl-tRNA-specific translation factor gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3654 N840_3655 N840_3655 selA selA 3761778 3763169 - selenocysteine synthase selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3655 N840_3656 N840_3656 yibF yibF 3763267 3763875 - glutathione S-transferase-like protein putative S-transferase gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3656 N840_3657 N840_3657 rhsA rhsA 3764103 3768236 + rhsA element core protein RshA rhsA protein in rhs element gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3657 N840_3658 N840_3658 yibA yibA 3768257 3769099 + putative lyase containing HEAT-repeat gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3658 N840_3659 N840_3659 yibJ yibJ 3769141 3770085 + predicted Rhs-family protein pseudogene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3659 N840_3660 N840_3660 yibG yibG 3770097 3770558 + yibG gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3660 N840_3661 N840_3661 yibS yibS 3770559 3770810 + pseudogene%2C Rhs family%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3661 N840_3662 N840_3662 yibW yibW 3770812 3771176 + pseudogene%2C rhsA-linked%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3662 N840_3663 N840_3663 yibV yibV 3771265 3771703 + hypothetical protein%2C no homologs%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3663 N840_3664 N840_3664 yibU yibU 3771868 3772066 + pseudogene%2C H repeat-associated protein%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3664 N840_3665 N840_3665 yibH yibH 3772163 3773299 - yibH putative membrane protein gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3665 N840_3666 N840_3666 yibI yibI 3773302 3773664 - inner membrane protein%2C DUF3302 family gene gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3666 N840_3667 N840_3667 mtlA mtlA 3774201 3776114 + fused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components PTS system%2C mannitol-specific enzyme IIABC components gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3667 N840_3668 N840_3668 mtlD mtlD 3776344 3777492 + mannitol-1-phosphate dehydrogenase%2C NAD-dependent mannitol-1-phosphate dehydrogenase gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3668 N840_3669 N840_3669 mtlR mtlR 3777492 3778079 + mannitol operon repressor repressor for mtl gene gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3669 N840_3670 N840_3670 yibT yibT 3778091 3778300 - yibT gene gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3670 N840_3671 N840_3671 yibL yibL 3778585 3778947 + conserved protein%2C ribosome-associated gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3671 N840_3672 N840_3672 lldP lldP 3779319 3780974 + L-lactate permease gene gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3672 N840_3673 N840_3673 lldR lldR 3780974 3781750 + dual role activator/repressor for lldPRD operon transcriptional regulator gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3673 N840_3674 N840_3674 lldD lldD 3781747 3782937 + L-lactate dehydrogenase%2C FMN-linked L-lactate dehydrogenase gene gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3674 N840_3675 N840_3675 trmL trmL 3783135 3783608 + tRNA Leu mC34%2CmU34 2'-O-methyltransferase%2C SAM-dependent gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3675 N840_3676 N840_3676 cysE cysE 3783661 3784482 - serine acetyltransferase gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3676 N840_3677 N840_3677 gpsA gpsA 3784562 3785581 - glycerol-3-phosphate dehydrogenase (NAD+) gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3677 N840_3678 N840_3678 secB secB 3785581 3786048 - protein export chaperone protein export%3B molecular chaperone%3B may bind to signel sequence gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3678 N840_3679 N840_3679 grxC grxC 3786111 3786362 - glutaredoxin 3 gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3679 N840_3680 N840_3680 yibN yibN 3786504 3786935 - putative rhodanese-related sulfurtransferase gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3680 N840_3681 N840_3681 gpmM gpmM 3787180 3788724 + phosphoglycero mutase III%2C cofactor-independent putative 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3681 N840_3682 N840_3682 envC envC 3788758 3790017 + activator of AmiB%2CC murein hydrolases%2C septal ring factor putative membrane protein gene gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3682 N840_3683 N840_3683 yibQ yibQ 3790021 3790980 + putative polysaccharide deacetylase gene gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3683 N840_3684 N840_3684 yibD yibD 3790967 3792001 - putative glycosyl transferase putative regulator gene gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3684 N840_3685 N840_3685 tdh tdh 3792240 3793265 - threonine 3-dehydrogenase%2C NAD(P)-binding protein threonine dehydrogenase gene gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3685 N840_3686 N840_3686 kbl kbl 3793275 3794471 - glycine C-acetyltransferase 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) gene gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3686 N840_3687 N840_3687 yibB yibB 3794746 3795603 - conserved protein%2C pfam09612 family involved in lipopolysaccharide biosynthesis gene gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3687 N840_3688 N840_3688 hldD hldD 3795907 3796839 + ADP-L-glycero-D-mannoheptose-6-epimerase%2C NAD(P)-binding protein ADP-L-glycero-D-mannoheptose-6-epimerase gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3688 N840_3689 N840_3689 waaF waaF 3796849 3797895 + ADP-heptose:LPS heptosyltransferase II ADP-heptose--lps heptosyltransferase II%3B lipopolysaccharide core biosynthesis gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3689 N840_3690 N840_3690 waaC waaC 3797899 3798858 + ADP-heptose:LPS heptosyl transferase I heptosyl transferase I%3B lipopolysaccharide core biosynthesis gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3690 N840_3691 N840_3691 waaL waaL 3798868 3800127 + O-antigen ligase O-antigen ligase%3B lipopolysaccharide core biosynthesis gene gene3711 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3691 N840_3692 N840_3692 waaU waaU 3800159 3801232 - lipopolysaccharide core biosynthesis probably hexose transferase%3B lipopolysaccharide core biosynthesis gene gene3712 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3692 N840_3693 N840_3693 waaZ waaZ 3801265 3802116 - lipopolysaccharide core biosynthesis protein lipopolysaccharide core biosynthesis gene gene3713 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3693 N840_3694 N840_3694 waaY waaY 3802187 3802885 - lipopolysaccharide core biosynthesis protein lipopolysaccharide core biosynthesis gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3694 N840_3695 N840_3695 waaJ waaJ 3802903 3803919 - UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3695 N840_3696 N840_3696 waaR waaR 3803959 3804978 - UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1%2C3-D-galactosyltransferase UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1%2C3-D-galactosyltransferase gene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3696 N840_3697 N840_3697 waaB waaB 3804978 3806057 - UDP-D-galactose:(glucosyl)lipopolysaccharide-1%2C 6-D-galactosyltransferase gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3697 N840_3698 N840_3698 waaS waaS 3806101 3807036 - lipopolysaccharide core biosynthesis protein lipopolysaccharide core biosynthesis gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3698 N840_3699 N840_3699 waaP waaP 3807073 3807870 - kinase that phosphorylates core heptose of lipopolysaccharide lipopolysaccharide core biosynthesis%3B phosphorylation of core heptose%3B attaches phosphate-containing substrate to LPS co gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3699 N840_3700 N840_3700 waaG waaG 3807863 3808987 - glucosyltransferase I glucosyltransferase I%3B lipopolysaccharide core biosynthesis gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3700 N840_3701 N840_3701 waaQ waaQ 3808984 3810018 - lipopolysaccharide core biosynthesis protein lipopolysaccharide core biosynthesis gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3701 N840_3702 N840_3702 waaA waaA 3810460 3811737 + 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3702 N840_3703 N840_3703 coaD coaD 3811745 3812224 + pantetheine-phosphate adenylyltransferase gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3703 N840_3704 N840_3704 mutM mutM 3812263 3813072 - formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase formamidopyrimidine DNA glycosylase gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3704 N840_3705 N840_3705 rpmG rpmG 3813170 3813337 - 50S ribosomal subunit protein L33 gene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3705 N840_3706 N840_3706 rpmB rpmB 3813358 3813594 - 50S ribosomal subunit protein L28 gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3706 N840_3707 N840_3707 yicR yicR 3813811 3814479 - conserved protein%2C UPF0758 family DNA repair protein gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3707 N840_3708 N840_3708 dfp dfp 3814651 3815871 + fused 4'-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase%2C FMN-binding protein flavoprotein affecting synthesis of DNA and pantothenate metabolism gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3708 N840_3709 N840_3709 dut dut 3815852 3816307 + deoxyuridinetriphosphatase gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3709 N840_3710 N840_3710 slmA slmA 3816414 3817010 + DNA-binding anti-FtsZ division inhibitor putative transcriptional regulator gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3710 N840_3711 N840_3711 pyrE pyrE 3817047 3817688 - orotate phosphoribosyltransferase gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3711 N840_3712 N840_3712 rph rph 3817783 3818469 - defective ribonuclease PH defective ribonuclease PH%3B enzyme%3B degradation of RNA%3B RNase PH%3B MG1655 has the rph-1 C-terminal frameshift mutation caused by a one base pair deletion of a G of the first base of codon 223 that severely reduces Rph activity%3B rph-1 mutation is polar on the downstream pyrE gene%2C reducing PyrE activity and causing partial pyrimidine starvation when grown in minimal medium%3B this mutant ribonuclease PH is shorter (228 aa) and has a C-terminal sequence of ESNPL replacing GIESIVATQKAALAN gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3712 N840_3713 N840_3713 yicC yicC 3818596 3819459 + conserved protein%2C UPF0701 family putative alpha helix protein gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3713 N840_3714 N840_3714 dinD dinD 3819680 3820504 + DNA-damage-inducible protein gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3714 N840_3715 N840_3715 yicG yicG 3820794 3821411 + inner membrane protein%2C UPF0126 family gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3715 N840_3716 N840_3716 ligB ligB 3821408 3823090 - DNA ligase%2C NAD(+)-dependent putative enzyme gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3716 N840_3717 N840_3717 gmk gmk 3823348 3823971 + guanylate kinase gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3717 N840_3718 N840_3718 rpoZ rpoZ 3824026 3824301 + RNA polymerase%2C omega subunit gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3718 N840_3719 N840_3719 spoT spoT 3824320 3826428 + bifunctional (p)ppGpp synthetase II/ guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase (p)ppGpp synthetase II%3B also guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3719 N840_3720 N840_3720 trmH trmH 3826435 3827124 + tRNA mG18-2'-O-methyltransferase%2C SAM-dependent gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3720 N840_3721 N840_3721 recG recG 3827130 3829211 + ATP-dependent DNA helicase DNA helicase%2C resolution of Holliday junctions%2C branch migration gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3721 N840_3722 N840_3722 gltS gltS 3829380 3830585 - glutamate transporter glutamate transport gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3722 N840_3723 N840_3723 xanP xanP 3830865 3832256 + xanthine permease putative transport protein gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3723 N840_3724 N840_3724 yicH yicH 3832377 3834086 + yicH gene gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3724 N840_3725 N840_3725 yicI yicI 3834139 3836457 - putative alpha-glucosidase gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3725 N840_3726 N840_3726 yicJ yicJ 3836467 3837849 - putative transporter putative permease gene gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3726 N840_3727 N840_3727 selC selC 3838142 3838236 + tRNA-Sec tRNA gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3727 N840_3728 N840_3728 yicT yicT 3838345 3838476 + pseudogene%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3728 N840_3729 N840_3729 setC setC 3838873 3840057 + putative arabinose efflux transporter two-module transport protein gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3729 N840_3730 N840_3730 yicL yicL 3840168 3841091 + putative inner membrane protein putative permease transporter gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3730 N840_3731 N840_3731 nlpA nlpA 3841095 3841913 - cytoplasmic membrane lipoprotein-28 lipoprotein-28 gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3731 N840_3732 N840_3732 yicS yicS 3842135 3842428 + putative periplasmic protein gene gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3732 N840_3733 N840_3733 nepI nepI 3842469 3843659 - putative transporter putative transport protein gene gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3733 N840_3734 N840_3734 yicN yicN 3843870 3844322 - yicN gene gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3734 N840_3735 N840_3735 yicO yicO 3844375 3845709 - putative adenine permease gene gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3735 N840_3736 N840_3736 ade ade 3845884 3847650 + cryptic adenine deaminase gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3736 N840_3737 N840_3737 uhpT uhpT 3847696 3849087 - hexose phosphate transporter hexose phosphate transport protein gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3737 N840_3738 N840_3738 uhpC uhpC 3849225 3850544 - membrane protein regulates uhpT expression regulator of uhpT gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3738 N840_3739 N840_3739 uhpB uhpB 3850554 3852056 - sensory histidine kinase in two-component regulatory sytem with UhpA sensor histidine protein kinase phosphorylates UhpA gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3739 N840_3740 N840_3740 uhpA uhpA 3852056 3852646 - DNA-binding response regulator in two-component regulatory system wtih UhpB response regulator%2C positive activator of uhpT transcription (sensor%2C uhpB) gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3740 N840_3741 N840_3741 ilvN ilvN 3852722 3853012 - acetolactate synthase I%2C small subunit acetolactate synthase I%2C valine sensitive%2C small subunit gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3741 N840_3742 N840_3742 ilvB ilvB 3853016 3854704 - acetolactate synthase I%2C large subunit acetolactate synthase I%2Cvaline-sensitive%2C large subunit gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3742 N840_3743 N840_3743 ivbL ivbL 3854810 3854908 - ilvB operon leader peptide gene gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3743 N840_3744 N840_3744 istR istR 3855038 3855177 - sRNA antisense regulators IstR-1 and IstR-2%2C affectr tisB%2C Hfq-dependent gene gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3744 N840_3745 N840_3745 tisB tisB 3855473 3855562 + toxic membrane persister formation peptide%2C LexA-regulated gene gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3745 N840_3746 N840_3746 emrD emrD 3855842 3857026 + multidrug efflux system protein 2-module integral membrane pump%3B multidrug resistance gene gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3746 N840_3747 N840_3747 yidF yidF 3857034 3857531 - putative DNA-binding transcriptional regulator putative transcriptional regulator gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3747 N840_3748 N840_3748 yidG yidG 3857528 3857890 - inner membrane protein gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3748 N840_3749 N840_3749 yidH yidH 3857880 3858227 - inner membrane protein%2C DUF202 family gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3749 N840_3750 N840_3750 yidI yidI 3858335 3858784 + inner membrane protein gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3750 N840_3751 N840_3751 yidJ yidJ 3858831 3860324 - putative sulfatase/phosphatase putative sulfatase gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3751 N840_3752 N840_3752 yidK yidK 3860321 3862036 - putative transporter putative cotransporter gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3752 N840_3753 N840_3753 yidL yidL 3862203 3863096 + putative transcriptional regulator%2C AraC family putative ARAC-type regulatory protein gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3753 N840_3754 N840_3754 glvG glvG 3863093 3863907 - pseudogene%3B probable 6-phospho-beta-glucosidase%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3754 N840_3755 N840_3755 glvC glvC 3863907 3865519 - pseudogene%2C arbutin specific enzyme IIC component of PTS%3Benzyme%3B Transport of small molecules: Carbohydrates%2C organic acids%2C alcohols%3B PTS system%2C arbutin-like IIB component%3B PTS system%2C arbutin-like IIC component%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3755 N840_3756 N840_3756 yidP yidP 3865815 3866531 + putative DNA-binding transcriptional regulator putative transcriptional regulator gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3756 N840_3757 N840_3757 yidE yidE 3866528 3868189 - putative transporter putative transport protein gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3757 N840_3758 N840_3758 ibpB ibpB 3868385 3868813 - heat shock chaperone heat shock protein gene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3758 N840_3759 N840_3759 ibpA ibpA 3868925 3869338 - heat shock chaperone heat shock protein gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3759 N840_3760 N840_3760 yidQ yidQ 3869644 3869976 + conserved outer membrane protein gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3760 N840_3761 N840_3761 yidR yidR 3869978 3871225 - yidR gene gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3761 N840_3762 N840_3762 cbrA cbrA 3871293 3872357 + colicin M resistance protein%3B FAD-binding protein%2C predicted oxidoreductase gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3762 N840_3763 N840_3763 dgoT dgoT 3872354 3873646 - D-galactonate transporter D-galactonate transport gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3763 N840_3764 N840_3764 dgoD dgoD 3873766 3874914 - galactonate dehydratase gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3764 N840_3765 N840_3765 dgoA dgoA 3874911 3875528 - 2-oxo-3-deoxygalactonate 6-phosphate aldolase gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3765 N840_3766 N840_3766 dgoK dgoK 3875512 3876390 - 2-oxo-3-deoxygalactonate kinase gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3766 N840_3767 N840_3767 dgoR dgoR 3876387 3877076 - putative DNA-binding transcriptional regulator transcriptional repressor for galactonate utilization (GntR family) gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3767 N840_3768 N840_3768 yidX yidX 3877354 3878010 + putative lipoproteinC putative replicase EC 2.7.- gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3768 N840_3769 N840_3769 yidA yidA 3878056 3878868 - sugar phosphate phosphatase%3B substrates include erythrose 4-P and mannose 1-P phosphatase gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3769 N840_3770 N840_3770 yidB yidB 3878983 3879381 - conserved protein%2C DUF937 family gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3770 N840_3771 N840_3771 gyrB gyrB 3879621 3882035 - DNA gyrase%2C subunit B DNA gyrase subunit B%2C type II topoisomerase%2C ATPase activity gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3771 N840_3772 N840_3772 recF recF 3882064 3883137 - gap repair protein ssDNA and dsDNA binding%2C ATP binding gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3772 N840_3773 N840_3773 dnaN dnaN 3883137 3884237 - DNA polymerase III%2C beta subunit DNA polymerase III%2C beta-subunit gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3773 N840_3774 N840_3774 dnaA dnaA 3884242 3885645 - chromosomal replication initiator protein DnaA%2C DNA-binding transcriptional dual regulator DNA biosynthesis%3B initiation of chromosome replication%3B can be transcription regulator gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3774 N840_3775 N840_3775 rpmH rpmH 3886252 3886392 + 50S ribosomal subunit protein L34 gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3775 N840_3776 N840_3776 rnpA rnpA 3886409 3886768 + protein C5 component of RNase P RNase P is an essential enzyme responsible for the processing of the 5' ends of precursors to tRNA%2C 4.5S RNA%2C and other naturally occurring stable RNA molecules%3B RNase P also affects gene expression of polycistronic operon mRNAs gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3776 N840_3777 N840_3777 yidD yidD 3886732 3886989 + membrane protein insertion efficiency factor%2C inner membrane protein%2C UPF0161 family gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3777 N840_3778 N840_3778 yidC yidC 3886992 3888638 + membrane protein insertase 60 KD inner-membrane protein gene gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3778 N840_3779 N840_3779 mnmE mnmE 3888744 3890108 + GTPase required for 5-methylaminomethyl-2-thiouridine modification at tRNA U34 gene gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3779 N840_3780 N840_3780 tnaC tnaC 3890351 3890425 + tryptophanase leader peptide gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3780 N840_3781 N840_3781 tnaA tnaA 3890646 3892061 + tryptophanase/L-cysteine desulfhydrase%2C PLP-dependent tryptophanase gene gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3781 N840_3782 N840_3782 tnaB tnaB 3892152 3893399 + tryptophan transporter of low affinity low affinity tryptophan permease gene gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3782 N840_3783 N840_3783 mdtL mdtL 3893531 3894706 + multidrug efflux system protein putative transport protein gene gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3783 N840_3784 N840_3784 yidZ yidZ 3894681 3895640 + putative DNA-binding transcriptional regulator putative transcriptional regulator LYSR-type gene gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3784 N840_3785 N840_3785 yieE yieE 3895797 3896546 + putative phosphopantetheinyl transferase%2C COG2091 family gene gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3785 N840_3786 N840_3786 chrR chrR 3896568 3897134 + chromate reductase%2C Class I%2C flavoprotein gene gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3786 N840_3787 N840_3787 purP purP 3897188 3898525 - adenine permease%2C high affinity%3B adenine:H+ symporter putative membrane / transport protein gene gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3787 N840_3788 N840_3788 yieH yieH 3898690 3899356 + putative phosphatase%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3788 N840_3789 N840_3789 cbrB cbrB 3899423 3899890 + inner membrane protein%2C creBC regulon gene gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3789 N840_3790 N840_3790 cbrC cbrC 3899939 3900526 + conserved protein%2C UPF0167 family gene gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3790 N840_3791 N840_3791 yieK yieK 3900588 3901310 - putative 6-phosphogluconolactonase pyrimidine-specific nucleoside hydrolase gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3791 N840_3792 N840_3792 yieL yieL 3901325 3902494 - putative xylanase gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3792 N840_3793 N840_3793 bglH bglH 3902521 3904137 - carbohydrate-specific outer membrane porin%2C cryptic putative receptor protein gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3793 N840_3794 N840_3794 bglB bglB 3904206 3905618 - cryptic phospho-beta-glucosidase B phospho-beta-glucosidase B%3B cryptic gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3794 N840_3795 N840_3795 bglF bglF 3905637 3907514 - fused beta-glucoside-specific PTS enzymes: IIA component/IIB component/IIC component PTS system beta-glucosides%2C enzyme II%2C cryptic gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3795 N840_3796 N840_3796 bglG bglG 3907648 3908484 - transcriptional antiterminator of the bgl operon positive regulation of bgl operon gene gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3796 N840_3797 N840_3797 phoU phoU 3908770 3909495 - negative regulator of PhoR/PhoB two-component regulator negative regulator for pho regulon and putative enzyme in phosphate metabolism gene gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3797 N840_3798 N840_3798 pstB pstB 3909510 3910283 - phosphate transporter subunit ATP-binding component of high-affinity phosphate-specific transport system%3B ATP-binding component of ABC superfamily gene gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3798 N840_3799 N840_3799 pstA pstA 3910466 3911356 - phosphate transporter subunit high-affinity phosphate-specific transport system%3B membrane component of ABC superfamily gene gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3799 N840_3800 N840_3800 pstC pstC 3911356 3912315 - phosphate transporter subunit high-affinity phosphate-specific transport system%2C cytoplasmic membrane component%3B membrane component of ABC superfamily gene gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3800 N840_3801 N840_3801 pstS pstS 3912402 3913442 - periplasmic phosphate binding protein%2C high-affinity high-affinity phosphate-specific transport system%3B periplasmic phosphate-binding protein%3B periplasmic-binding component of ABC superfamily gene gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3801 N840_3802 N840_3802 glmS glmS 3913756 3915585 - L-glutamine:D-fructose-6-phosphate aminotransferase gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3802 N840_3803 N840_3803 glmU glmU 3915747 3917117 - fused N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase N-acetyl glucosamine-1-phosphate uridyltransferase gene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3803 N840_3804 N840_3804 atpC atpC 3917470 3917889 - F1 sector of membrane-bound ATP synthase%2C epsilon subunit membrane-bound ATP synthase%2C F1 sector%2C epsilon-subunit gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3804 N840_3805 N840_3805 atpD atpD 3917910 3919292 - F1 sector of membrane-bound ATP synthase%2C beta subunit membrane-bound ATP synthase%2C F1 sector%2C beta-subunit gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3805 N840_3806 N840_3806 atpG atpG 3919319 3920182 - F1 sector of membrane-bound ATP synthase%2C gamma subunit membrane-bound ATP synthase%2C F1 sector%2C gamma-subunit gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3806 N840_3807 N840_3807 atpA atpA 3920233 3921774 - F1 sector of membrane-bound ATP synthase%2C alpha subunit membrane-bound ATP synthase%2C F1 sector%2C alpha-subunit gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3807 N840_3808 N840_3808 atpH atpH 3921787 3922320 - F1 sector of membrane-bound ATP synthase%2C delta subunit membrane-bound ATP synthase%2C F1 sector%2C delta-subunit gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3808 N840_3809 N840_3809 atpF atpF 3922335 3922805 - F0 sector of membrane-bound ATP synthase%2C subunit b membrane-bound ATP synthase%2C F0 sector%2C subunit b gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3809 N840_3810 N840_3810 atpE atpE 3922867 3923106 - F0 sector of membrane-bound ATP synthase%2C subunit c membrane-bound ATP synthase%2C F0 sector%2C subunit c gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3810 N840_3811 N840_3811 atpB atpB 3923153 3923968 - F0 sector of membrane-bound ATP synthase%2C subunit a membrane-bound ATP synthase%2C F0 sector%2C subunit a gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3811 N840_3812 N840_3812 atpI atpI 3923977 3924357 - ATP synthase%2C membrane-bound accessory factor membrane-bound ATP synthase%2C dispensable protein%2C affects expression of atpB gene gene3832 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3812 N840_3813 N840_3813 rsmG rsmG 3924974 3925597 - 16S rRNA m(7)G527 methyltransferase%2C SAM-dependent%3B glucose-inhibited cell-division protein glucose-inhibited division%3B chromosome replication? gene gene3833 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3813 N840_3814 N840_3814 mnmG mnmG 3925661 3927550 - 5-methylaminomethyl-2-thiouridine modification at tRNA U34 glucose-inhibited division%3B chromosome replication? gene gene3834 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3814 N840_3815 N840_3815 mioC mioC 3927929 3928372 - FMN-binding protein MioC initiation of chromosome replication gene gene3835 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3815 N840_3816 N840_3816 asnC asnC 3928462 3928920 - DNA-binding transcriptional dual regulator regulator for asnA%2C asnC and gidA gene gene3836 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3816 N840_3817 N840_3817 asnA asnA 3929072 3930064 + asparagine synthetase A gene gene3837 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3817 N840_3818 N840_3818 viaA viaA 3930069 3931520 - putative von Willibrand factor containing protein gene gene3838 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3818 N840_3819 N840_3819 ravA ravA 3931514 3933010 - fused predicted transcriptional regulator: sigma54 activator protein/conserved protein putative 2-component regulator gene gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3819 N840_3820 N840_3820 kup kup 3933233 3935101 + potassium transporter low affinity potassium transport system gene gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3820 N840_3821 N840_3821 rbsD rbsD 3935268 3935687 + putative cytoplasmic sugar-binding protein D-ribose high-affinity transport system%3B membrane-associated protein gene gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3821 N840_3822 N840_3822 rbsA rbsA 3935695 3937200 + fused D-ribose transporter subunits of ABC superfamily: ATP-binding components ATP-binding component of D-ribose high-affinity transport system gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3822 N840_3823 N840_3823 rbsC rbsC 3937205 3938170 + D-ribose transporter subunit D-ribose high-affinity transport system%3B membrane component of ABC superfamily gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3823 N840_3824 N840_3824 rbsB rbsB 3938195 3939085 + D-ribose transporter subunit D-ribose periplasmic binding protein%3B periplasmic-binding compoent of ABC superfamily gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3824 N840_3825 N840_3825 rbsK rbsK 3939211 3940140 + ribokinase gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3825 N840_3826 N840_3826 rbsR rbsR 3940144 3941136 + DNA-binding transcriptional repressor of ribose metabolism regulator for rbs operon gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3826 N840_3827 N840_3827 hsrA hsrA 3941102 3942529 - putative multidrug or homocysteine efflux system putative transport protein (MFS family)%3B high copy suppressor of RspA: relieves RspA-mediated reduction of sigma(S) levels%3B overexpression also reduces MetE activity%3B effect proposed to be via an elevation in levels of homocysteine%2C causing a concomitant increase in homocysteine thiolactone%3B overexpression has no effect on resistance to a variety of toxic compounds%3B overexpression has no effect on resistance to a variety of toxic compounds gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3827 N840_3828 N840_3828 yieP yieP 3942552 3943244 - putative transcriptional regulator gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3828 N840_3829 N840_3829 rrsC rrsC 3943725 3945266 + 16S ribosomal RNA rRNA gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3829 N840_3830 N840_3830 gltU gltU 3945352 3945427 + tRNA-Glu anticodon: UUC tRNA gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3830 N840_3831 N840_3831 rrlC rrlC 3945621 3948524 + 23S ribosomal RNA rRNA gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3831 N840_3832 N840_3832 rrfC rrfC 3948617 3948736 + 5S ribosomal RNA rRNA gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3832 N840_3833 N840_3833 aspT aspT 3948789 3948865 + tRNA-Asp anticodon: GUC tRNA gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3833 N840_3834 N840_3834 trpT trpT 3948874 3948949 + tRNA-Trp anticodon: CCA tRNA gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3834 N840_3835 N840_3835 hdfR hdfR 3949045 3949884 - DNA-binding transcriptional regulator transcriptional regulator of the flhDC operon gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3835 N840_3836 N840_3836 yifE yifE 3950003 3950341 + conserved protein%2C UPF0438 family gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3836 N840_3837 N840_3837 yifB yifB 3950366 3951886 - putative bifunctional enzyme and transcriptional regulator putative 2-component regulator gene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3837 N840_3838 N840_3838 ilvL ilvL 3952239 3952337 + ilvG operon leader peptide ilvGEDA operon leader peptide gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3838 N840_3839 N840_3839 ilvX ilvX 3952424 3952474 + ilvX expressed protein gene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3839 N840_3840 N840_3840 ilvG ilvG 3952477 3954121 + pseudogene%2C acetohydroxy acid synthase II%3B acetolactate synthase II%2C large subunit%2C cryptic%2C interrupted pseudogene gene3860 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3840 N840_3841 N840_3841 ilvM ilvM 3954118 3954381 + acetolactate synthase II%2C small subunit acetolactate synthase II%2C valine insensitive%2C small subunit gene gene3861 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3841 N840_3842 N840_3842 ilvE ilvE 3954401 3955330 + branched-chain amino-acid aminotransferase gene gene3862 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3842 N840_3843 N840_3843 ilvD ilvD 3955395 3957245 + dihydroxyacid dehydratase gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3843 N840_3844 N840_3844 ilvA ilvA 3957248 3958792 + threonine deaminase threonine deaminase (dehydratase) gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3844 N840_3845 N840_3845 ilvY ilvY 3958844 3959737 - DNA-binding transcriptional dual regulator positive regulator for ilvC gene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3845 N840_3846 N840_3846 ilvC ilvC 3959887 3961362 + ketol-acid reductoisomerase%2C NAD(P)-binding protein ketol-acid reductoisomerase gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3846 N840_3847 N840_3847 ppiC ppiC 3961449 3961730 - peptidyl-prolyl cis-trans isomerase C (rotamase C) gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3847 N840_3848 N840_3848 yifN yifN 3961929 3962377 - conserved protein (pseudogene) pseudogene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3848 N840_3849 N840_3849 rep rep 3962594 3964615 + DNA helicase and single-stranded DNA-dependent ATPase rep helicase%2C a single-stranded DNA dependent ATPase gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3849 N840_3850 N840_3850 gpp gpp 3964662 3966146 - guanosine pentaphosphatase/exopolyphosphatase guanosine pentaphosphatase%3B exopolyphosphatase gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3850 N840_3851 N840_3851 rhlB rhlB 3966282 3967547 - ATP-dependent RNA helicase putative ATP-dependent RNA helicase gene gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3851 N840_3852 N840_3852 trxA trxA 3967678 3968007 + thioredoxin 1 gene gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3852 N840_3853 N840_3853 rho rho 3968334 3969593 + transcription termination factor transcription termination factor Rho%3B polarity suppressor gene gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3853 N840_3854 N840_3854 wecA wecA 3969833 3970936 + UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase gene gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3854 N840_3855 N840_3855 wzzE wzzE 3970948 3971995 + modulator of enterobacterial common antigen (ECA) polysaccharide chain length%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3855 N840_3856 N840_3856 wecB wecB 3972051 3973181 + UDP-N-acetyl glucosamine-2-epimerase gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3856 N840_3857 N840_3857 wecC wecC 3973178 3974440 + UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase%3B synthesis of enterobacterial common antigen (ECA) gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3857 N840_3858 N840_3858 rffG rffG 3974440 3975507 + dTDP-glucose 4%2C6-dehydratase gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3858 N840_3859 N840_3859 rffH rffH 3975526 3976407 + glucose-1-phosphate thymidylyltransferase gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3859 N840_3860 N840_3860 wecD wecD 3976385 3977059 + TDP-fucosamine acetyltransferase putative acyltransferase%2C lipopolysaccharide biosynthesis protein gene gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3860 N840_3861 N840_3861 wecE wecE 3977064 3978194 + TDP-4-oxo-6-deoxy-D-glucose transaminase gene gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3861 N840_3862 N840_3862 wzxE wzxE 3978196 3979446 + O-antigen translocase O-antigen translocase in LPS biosynthesis gene gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3862 N840_3863 N840_3863 wecF wecF 3979443 3980522 + TDP-Fuc4NAc:lipidIIFuc4NAc transferase TDP-Fuc4NAc:lipidII transferase gene gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3863 N840_3864 N840_3864 wzyE wzyE 3980519 3981871 + putative Wzy protein involved in ECA polysaccharide chain elongation putative ECA polymerization protein gene gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3864 N840_3865 N840_3865 wecG wecG 3981874 3982614 + UDP-N-acetyl-D-mannosaminuronic acid transferase probable UDP-N-acetyl-D-mannosaminuronic acid transferase%3B synthesis of enterobacterial common antigen (ECA) gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3865 N840_3866 N840_3866 yifK yifK 3982805 3984191 + putative amino acid/amine transport protein%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3866 N840_3867 N840_3867 argX argX 3984294 3984370 + tRNA-Arg anticodon: CCG tRNA gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3867 N840_3868 N840_3868 hisR hisR 3984428 3984504 + tRNA-His anticodon: GUG tRNA gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3868 N840_3869 N840_3869 leuT leuT 3984525 3984611 + tRNA-Leu anticodon: CAG tRNA gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3869 N840_3870 N840_3870 proM proM 3984654 3984730 + tRNA-Pro anticodon: UGG tRNA gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3870 N840_3871 N840_3871 aslB aslB 3984877 3986112 + putative regulator of arylsulfatase activity putative arylsulfatase regulator gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3871 N840_3872 N840_3872 aslA aslA 3986271 3987926 - acrylsulfatase-like enzyme arylsulfatase gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3872 N840_3873 N840_3873 glmZ glmZ 3988351 3988557 + sRNA antisense activator of glmS mRNA%2C Hfq-dependent identified in a large scale screen gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3873 N840_3874 N840_3874 hemY hemY 3988605 3989801 - putative protoheme IX synthesis protein a late step of protoheme IX synthesis gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3874 N840_3875 N840_3875 hemX hemX 3989804 3990985 - putative uroporphyrinogen III methyltransferase uroporphyrinogen III methylase gene gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3875 N840_3876 N840_3876 hemD hemD 3991007 3991747 - uroporphyrinogen III synthase gene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3876 N840_3877 N840_3877 hemC hemC 3991744 3992685 - hydroxymethylbilane synthase porphobilinogen deaminase %3D hydroxymethylbilane synthase gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3877 N840_3878 N840_3878 cyaA cyaA 3993072 3995618 + adenylate cyclase gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3878 N840_3879 N840_3879 cyaY cyaY 3995658 3995978 - iron-dependent inhibitor of iron-sulfur cluster formation%3B frataxin%3B iron-binding and oxidizing protein iron-binding frataxin homolog%3B cyaY is expressed%3B neither knock-out nor overexpression of cyaY in Escherichia coli affects cellular iron content or sensitivity to oxidants%3B possibly involved in maintaining the intracellular iron pool in a soluble%2C non-toxic and bio-available form for biosynthetic pathways%2C while preventing the participation of iron in oxidative damage gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3879 N840_3880 N840_3880 yifL yifL 3996441 3996644 + putative lipoprotein gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3880 N840_3881 N840_3881 dapF dapF 3996681 3997505 + diaminopimelate epimerase gene gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3881 N840_3882 N840_3882 yigA yigA 3997502 3998209 + conserved protein%2C DUF484 family gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3882 N840_3883 N840_3883 xerC xerC 3998206 3999102 + site-specific tyrosine recombinase site-specific recombinase%2C acts on cer sequence of ColE1%2C effects chromosome segregation at cell division gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3883 N840_3884 N840_3884 yigB yigB 3999102 3999818 + FMN phosphatase putative phosphatase gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3884 N840_3885 N840_3885 uvrD uvrD 3999902 4002064 + DNA-dependent ATPase I and helicase II gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3885 N840_3886 N840_3886 yigE yigE 4002211 4002975 - putative protein%2C DUF2233 family gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3886 N840_3887 N840_3887 corA corA 4003345 4004295 + magnesium/nickel/cobalt transporter Mg2+ transport%2C system I gene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3887 N840_3888 N840_3888 yigF yigF 4004338 4004718 - putative inner membrane protein gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3888 N840_3889 N840_3889 yigG yigG 4004732 4005112 - conserved inner membrane protein gene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3889 N840_3890 N840_3890 rarD rarD 4005207 4006097 - putative chloramphenical resistance permease gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3890 N840_3891 N840_3891 yigI yigI 4006149 4006616 - conserved protein%2C 4HBT family of thioesterases gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3891 N840_3892 N840_3892 pldA pldA 4006781 4007650 + outer membrane phospholipase A gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3892 N840_3893 N840_3893 recQ recQ 4007783 4009612 + ATP-dependent DNA helicase gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3893 N840_3894 N840_3894 rhtC rhtC 4009676 4010296 + threonine efflux pump amino acid exporter (threonine)%3B threonine efflux protein (RhtB family) gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3894 N840_3895 N840_3895 rhtB rhtB 4010358 4010978 - homoserine%2C homoserine lactone and S-methyl-methionine efflux pump gene gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3895 N840_3896 N840_3896 pldB pldB 4011089 4012111 + lysophospholipase L2 gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3896 N840_3897 N840_3897 yigL yigL 4012119 4012919 + putative hydrolase conserved protein%2C phosphatase-like domain gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3897 N840_3898 N840_3898 yigM yigM 4012995 4013894 + putative inner membrane protein gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3898 N840_3899 N840_3899 metR metR 4013782 4014735 - DNA-binding transcriptional activator%2C homocysteine-binding protein regulator for metE and metH gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3899 N840_3900 N840_3900 metE metE 4014972 4017233 + 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase tetrahydropteroyltriglutamate methyltransferase gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3900 N840_3901 N840_3901 ysgA ysgA 4017273 4018088 - putative hydrolase putative enzyme gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3901 N840_3902 N840_3902 udp udp 4018350 4019111 + uridine phosphorylase gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3902 N840_3903 N840_3903 rmuC rmuC 4019252 4020679 + putative recombination limiting protein putative alpha helix chain gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3903 N840_3904 N840_3904 ubiE ubiE 4020774 4021529 + bifunctional 2-octaprenyl-6-methoxy-1%2C4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase 2-octaprenyl-6-methoxy-1%2C4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinone gene gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3904 N840_3905 N840_3905 yigP yigP 4021543 4022148 + conserved protein%2C SCP2 family gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3905 N840_3906 N840_3906 esrE esrE 4021897 4022148 + essential sRNA of unknown function ncRNA gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3906 N840_3907 N840_3907 ubiB ubiB 4022145 4023785 + 2-octaprenylphenol hydroxylase gene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3907 N840_3908 N840_3908 tatA tatA 4023864 4024133 + TatABCE protein translocation system subunit gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3908 N840_3909 N840_3909 tatB tatB 4024137 4024652 + TatABCE protein translocation system subunit gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3909 N840_3910 N840_3910 tatC tatC 4024655 4025431 + TatABCE protein translocation system subunit gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3910 N840_3911 N840_3911 tatD tatD 4025473 4026255 + quality control of Tat-exported FeS proteins%3B Mg-dependent cytoplasmic DNase cytoplasmic Dnase gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3911 N840_3912 N840_3912 rfaH rfaH 4026252 4026740 - DNA-binding transcriptional antiterminator transcriptional activator affecting biosynthesis of lipopolysaccharide core%2C F pilin%2C and haemolysin gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3912 N840_3913 N840_3913 ubiD ubiD 4026907 4028400 + 3-octaprenyl-4-hydroxybenzoate decarboxylase gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3913 N840_3914 N840_3914 fre fre 4028446 4029147 + NAD(P)H-flavin reductase ferrisiderophore reductase%3B flavin reductase (NADPH:flavin oxidoreductase) gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3914 N840_3915 N840_3915 fadA fadA 4029528 4030691 - 3-ketoacyl-CoA thiolase (thiolase I) thiolase I%3B 3-ketoacyl-CoA thiolase%3B acetyl-CoA transferase gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3915 N840_3916 N840_3916 fadB fadB 4030701 4032890 - fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase%3B 3-hydroxybutyryl-CoA epimerase%3B delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase%3B enoyl-CoA hydratase gene gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3916 N840_3917 N840_3917 pepQ pepQ 4033080 4034411 + proline dipeptidase gene gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3917 N840_3918 N840_3918 yigZ yigZ 4034411 4035025 + conserved protein%2C UPF0029 family gene gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3918 N840_3919 N840_3919 trkH trkH 4035064 4036515 + potassium transporter potassium uptake%2C requires TrkE gene gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3919 N840_3920 N840_3920 hemG hemG 4036527 4037072 + protoporphyrin oxidase%2C flavoprotein protoporphyrin oxidase gene gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3920 N840_3921 N840_3921 rrsA rrsA 4037450 4038991 + 16S ribosomal RNA rRNA gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3921 N840_3922 N840_3922 ileT ileT 4039060 4039136 + tRNA-Ile anticodon: GAU tRNA gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3922 N840_3923 N840_3923 alaT alaT 4039179 4039254 + tRNA-Ala anticodon: UGC tRNA gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3923 N840_3924 N840_3924 rrlA rrlA 4039438 4042343 + 23S ribosomal RNA rRNA gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3924 N840_3925 N840_3925 rrfA rrfA 4042436 4042555 + 5S ribosomal RNA rRNA gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3925 N840_3926 N840_3926 mobB mobB 4042825 4043352 - molybdopterin-guanine dinucleotide biosynthesis protein B gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3926 N840_3927 N840_3927 mobA mobA 4043334 4043918 - molybdopterin-guanine dinucleotide synthase molybdopterin ---> molybdopterin-guanine dinucleotide%2C protein Ar gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3927 N840_3928 N840_3928 yihD yihD 4043988 4044257 + DUF1040 protein YihD gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3928 N840_3929 N840_3929 rdoA rdoA 4044334 4045320 + Thr/Ser kinase implicated in Cpx stress response gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3929 N840_3930 N840_3930 dsbA dsbA 4045337 4045963 + periplasmic protein disulfide isomerase I protein disulfide isomerase I%2C essential for cytochrome c synthesis and formate-dependent reduction gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3930 N840_3931 N840_3931 yihF yihF 4046118 4047548 + conserved protein%2C DUF945 family putative GTP-binding protein gene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3931 N840_3932 N840_3932 yihG yihG 4047589 4048521 - inner membrane protein%2C Predicted acyltransferas putative endonuclease gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3932 N840_3933 N840_3933 polA polA 4048885 4051671 + fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease DNA polymerase I%2C 3' --> 5' polymerase%2C 5' --> 3' and 3' --> 5' exonuclease gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3933 N840_3934 N840_3934 spf spf 4051818 4051926 + Spot 42 sRNA antisense regulator of galK translation%2C Hfq-dependent gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3934 N840_3935 N840_3935 yihA yihA 4052052 4052684 - GTP-binding protein required for normal cell division GTPase essential for cell cycle gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3935 N840_3936 N840_3936 csrC csrC 4052955 4053199 + CsrC sRNA sequesters CsrA%2C a carbon flux regulator CsrC regulatory RNA%3B binds global regulatory protein CsrA%2C antagonizing CsrA regulation ncRNA gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3936 N840_3937 N840_3937 yihI yihI 4053266 4053775 + activator of Der GTPase gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3937 N840_3938 N840_3938 hemN hemN 4053964 4055337 + coproporphyrinogen III oxidase%2C SAM and NAD(P)H dependent%2C oxygen-independent O2-independent coproporphyrinogen III oxidase gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3938 N840_3939 N840_3939 yshB yshB 4055566 4055676 - yshB expressed protein gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3939 N840_3940 N840_3940 glnG glnG 4055788 4057197 - fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein response regulator for gln (sensor glnL) (nitrogen regulator I%2C NRI) gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3940 N840_3941 N840_3941 glnL glnL 4057209 4058258 - sensory histidine kinase in two-component regulatory system with GlnG histidine protein kinase sensor for GlnG regulator (nitrogen regulator II%2C NRII) gene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3941 N840_3942 N840_3942 glnA glnA 4058544 4059953 - glutamine synthetase gene gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3942 N840_3943 N840_3943 typA typA 4060326 4062149 + GTP-binding protein gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3943 N840_3944 N840_3944 yihL yihL 4062366 4063076 + putative DNA-binding transcriptional regulator putative transcriptional regulator gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3944 N840_3945 N840_3945 yihM yihM 4063084 4064064 + putative sugar phosphate isomerase gene gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3945 N840_3946 N840_3946 yihN yihN 4064166 4065431 + inner membrane protein%2C predicted transporter putative resistance protein (transport) gene gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3946 N840_3947 N840_3947 ompL ompL 4065522 4066214 - outer membrane porin L gene gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3947 N840_3948 N840_3948 yihO yihO 4066282 4067685 - putative transporter putative permease gene gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3948 N840_3949 N840_3949 yihP yihP 4067728 4069113 - putative transporter putative permease gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3949 N840_3950 N840_3950 yihQ yihQ 4069159 4071195 - alpha-glucosidase putative glycosidase gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3950 N840_3951 N840_3951 yihR yihR 4071394 4072320 - putative aldose-1-epimerase gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3951 N840_3952 N840_3952 yihS yihS 4072434 4073675 - aldose-ketose isomerase%3B D-mannose isomerase gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3952 N840_3953 N840_3953 yihT yihT 4073692 4074570 - putative aldolase gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3953 N840_3954 N840_3954 yihU yihU 4074594 4075490 - gamma-hydroxybutyrate dehydrogenase%2C NADH-dependent putative dehydrogenase gene gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3954 N840_3955 N840_3955 yihV yihV 4075658 4076554 + putative sugar kinase putative kinase gene gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3955 N840_3956 N840_3956 yihW yihW 4076588 4077373 + putative DNA-binding transcriptional regulator putative DEOR-type transcriptional regulator gene gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3956 N840_3957 N840_3957 yihX yihX 4077472 4078071 + alpha-D-Glucose-1-P phosphatase%2C anomer-specific putative phosphatase gene gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3957 N840_3958 N840_3958 yihY yihY 4078065 4078937 + putative inner membrane protein tRNA processing exoribonuclease BN gene gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3958 N840_3959 N840_3959 dtd dtd 4078934 4079371 + D-tyr-tRNA(Tyr) deacylase gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3959 N840_3960 N840_3960 yiiD yiiD 4079368 4080357 + putative acetyltransferase gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3960 N840_3961 N840_3961 yiiE yiiE 4081216 4081428 + putative transcriptional regulator gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3961 N840_3962 N840_3962 yiiF yiiF 4081670 4081888 + yiiF gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3962 N840_3963 N840_3963 fdhE fdhE 4082218 4083147 - formate dehydrogenase formation protein affects formate dehydrogenase-N gene gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3963 N840_3964 N840_3964 fdoI fdoI 4083144 4083779 - formate dehydrogenase-O%2C cytochrome b556 subunit formate dehydrogenase%2C cytochrome B556 (FDO) subunit gene gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3964 N840_3965 N840_3965 fdoH fdoH 4083776 4084678 - formate dehydrogenase-O%2C Fe-S subunit formate dehydrogenase-O%2C iron-sulfur subunit gene gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3965 N840_3966 N840_3966 fdoG fdoG 4084691 4087741 - formate dehydrogenase-O%2C major subunit%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3966 N840_3967 N840_3967 fdhD fdhD 4087935 4088768 + formate dehydrogenase formation protein affects formate dehydrogenase-N gene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3967 N840_3968 N840_3968 yiiG yiiG 4088921 4089976 + conserved lipoprotein gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3968 N840_3969 N840_3969 frvR frvR 4090026 4091774 - putative frv operon regulator%3B contains a PTS EIIA domain putative frv operon regulatory protein gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3969 N840_3970 N840_3970 frvX frvX 4091774 4092844 - putative peptidase frv operon protein gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3970 N840_3971 N840_3971 frvB frvB 4092834 4094285 - fused predicted PTS enzymes: IIB component/IIC component PTS system%2C fructose-like enzyme IIBC component gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3971 N840_3972 N840_3972 frvA frvA 4094296 4094742 - putative enzyme IIA component of PTS PTS system%2C fructose-specific IIA component gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3972 N840_3973 N840_3973 rhaM rhaM 4095043 4095357 - L-rhamnose mutarotase gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3973 N840_3974 N840_3974 rhaD rhaD 4095367 4096191 - rhamnulose-1-phosphate aldolase rhamnulose-phosphate aldolase gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3974 N840_3975 N840_3975 rhaA rhaA 4096642 4097901 - L-rhamnose isomerase gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3975 N840_3976 N840_3976 rhaB rhaB 4097898 4099367 - rhamnulokinase gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3976 N840_3977 N840_3977 rhaS rhaS 4099655 4100491 + DNA-binding transcriptional activator for rhaBAD and rhaT%2C L-rhamnose-binding protein positive regulator for rhaBAD operon gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3977 N840_3978 N840_3978 rhaR rhaR 4100565 4101413 + DNA-binding transcriptional activator for rhaSR%2C L-rhamnose-binding protein positive regulator for rhaRS operon gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3978 N840_3979 N840_3979 rhaT rhaT 4101410 4102444 - L-rhamnose:proton symporter rhamnose transport gene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3979 N840_3980 N840_3980 sodA sodA 4102729 4103349 + superoxide dismutase%2C Mn superoxide dismutase%2C manganese gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3980 N840_3981 N840_3981 kdgT kdgT 4103609 4104592 + 2-keto-3-deoxy-D-gluconate transporter 2-keto-3-deoxy-D-gluconate transport system gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3981 N840_3982 N840_3982 yiiM yiiM 4104741 4105415 + 6-N-hydroxylaminopurine resistance protein gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3982 N840_3983 N840_3983 cpxA cpxA 4105521 4106894 - sensory histidine kinase in two-component regulatory system with CpxR probable sensor protein (histidine protein kinase)%2C acting on arcA gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3983 N840_3984 N840_3984 cpxR cpxR 4106891 4107589 - DNA-binding response regulator in two-component regulatory system with CpxA transcriptional regulator in 2-component system gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3984 N840_3985 N840_3985 cpxP cpxP 4107739 4108239 + inhibitor of the cpx response%3B periplasmic adaptor protein periplasmic repressor of cpx regulon by interaction with CpxA gene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3985 N840_3986 N840_3986 fieF fieF 4108388 4109290 + ferrous iron and zinc transporter putative transport system permease protein gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3986 N840_3987 N840_3987 pfkA pfkA 4109471 4110433 + 6-phosphofructokinase I gene gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3987 N840_3988 N840_3988 sbp sbp 4110753 4111742 + sulfate transporter subunit periplasmic sulfate-binding protein%3B periplasmic-binding component of ABC superfamily gene gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3988 N840_3989 N840_3989 cdh cdh 4111849 4112604 + CDP-diacylglycerol phosphotidylhydrolase gene gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3989 N840_3990 N840_3990 tpiA tpiA 4112659 4113426 - triosephosphate isomerase gene gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3990 N840_3991 N840_3991 yiiQ yiiQ 4113534 4114133 - yiiQ gene gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3991 N840_3992 N840_3992 yiiR yiiR 4114234 4114674 + putative inner membrane protein%2C DUF805 family gene gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3992 N840_3993 N840_3993 yiiS yiiS 4114886 4115185 + conserved protein%2C UPF0381 family gene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3993 N840_3994 N840_3994 uspD uspD 4115212 4115640 + stress-induced protein putative regulator gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3994 N840_3995 N840_3995 fpr fpr 4115645 4116391 - ferredoxin-NADP reductase gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3995 N840_3996 N840_3996 glpX glpX 4116488 4117498 - fructose 1%2C6-bisphosphatase II unknown function in glycerol metabolism gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3996 N840_3997 N840_3997 glpK glpK 4117633 4119141 - glycerol kinase gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3997 N840_3998 N840_3998 glpF glpF 4119164 4120009 - glycerol facilitator facilitated diffusion of glycerol gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3998 N840_3999 N840_3999 zapB zapB 4120434 4120679 + FtsZ stabilizer%3B septal ring assembly factor%2C stimulates cell division gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=N840_3999 N840_4000 N840_4000 rraA rraA 4120764 4121249 - ribonuclease E (RNase E) inhibitor protein menaquinone biosynthesis%2C unknown gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4000 N840_4001 N840_4001 menA menA 4121342 4122268 - 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase 1%2C4-dihydroxy-2-naphthoate --> dimethylmenaquinone gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4001 N840_4002 N840_4002 hslU hslU 4122335 4123666 - molecular chaperone and ATPase component of HslUV protease heat shock protein hslVU%2C ATPase subunit%2C homologous to chaperones gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4002 N840_4003 N840_4003 hslV hslV 4123676 4124206 - peptidase component of the HslUV protease heat shock protein hslVU%2C proteasome-related peptidase subunit gene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4003 N840_4004 N840_4004 ftsN ftsN 4124299 4125258 - essential cell division protein gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4004 N840_4005 N840_4005 cytR cytR 4125350 4126375 - DNA-binding transcriptional dual regulator regulator for deo operon%2C udp%2C cdd%2C tsx%2C nupC%2C and nupG gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4005 N840_4006 N840_4006 priA priA 4126531 4128729 - Primosome factor n' (replication factor Y) primosomal protein N'(%3D factor Y)(putative helicase) gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4006 N840_4007 N840_4007 rpmE rpmE 4128932 4129144 + 50S ribosomal subunit protein L31 gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4007 N840_4008 N840_4008 yiiX yiiX 4129205 4129813 - putative lipid binding hydrolase%2C DUF830 family%2C function unknown gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4008 N840_4009 N840_4009 metJ metJ 4129997 4130314 - DNA-binding transcriptional repressor%2C S-adenosylmethionine-binding protein repressor of all met genes but metF gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4009 N840_4010 N840_4010 metB metB 4130591 4131751 + cystathionine gamma-synthase%2C PLP-dependent cystathionine gamma-synthase gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4010 N840_4011 N840_4011 metL metL 4131754 4134186 + fused aspartokinase II/homoserine dehydrogenase II aspartokinase II and homoserine dehydrogenase II gene gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4011 N840_4012 N840_4012 metF metF 4134535 4135425 + 5%2C10-methylenetetrahydrofolate reductase gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4012 N840_4013 N840_4013 katG katG 4135754 4137934 + catalase-peroxidase HPI%2C heme b-containing catalase%3B hydroperoxidase HPI(I) gene gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4013 N840_4014 N840_4014 yijE yijE 4138027 4138932 + inner membrane protein%2C predicted permease gene gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4014 N840_4015 N840_4015 yijF yijF 4138959 4139576 - yijF gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4015 N840_4016 N840_4016 gldA gldA 4139851 4140954 - glycerol dehydrogenase%2C NAD glycerol dehydrogenase%2C (NAD) gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4016 N840_4017 N840_4017 fsaB fsaB 4140965 4141627 - fructose-6-phosphate aldolase 2 gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4017 N840_4018 N840_4018 ptsA ptsA 4141639 4144140 - fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component PEP-protein phosphotransferase system enzyme I gene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4018 N840_4019 N840_4019 frwC frwC 4144449 4145528 + putative enzyme IIC component of PTS PTS system%2C fructose-like enzyme II component gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4019 N840_4020 N840_4020 frwB frwB 4145543 4145863 + putative enzyme IIB component of PTS PTS system fructose-like IIB component 1 gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4020 N840_4021 N840_4021 pflD pflD 4145914 4148211 + putative formate acetyltransferase 2 (pyruvate formate lyase II) formate acetyltransferase 2 gene gene4041 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4021 N840_4022 N840_4022 pflC pflC 4148177 4149055 + pyruvate formate lyase II activase probable pyruvate formate lyase activating enzyme 2 gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4022 N840_4023 N840_4023 frwD frwD 4149057 4149398 + putative enzyme IIB component of PTS PTS system fructose-like IIB component 2 gene gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4023 N840_4024 N840_4024 yijO yijO 4149385 4150236 - putative DNA-binding transcriptional regulator putative ARAC-type regulatory protein gene gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4024 N840_4025 N840_4025 eptC eptC 4150451 4152184 - putative LPS core phosphoethanolamine transferase gene gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4025 N840_4026 N840_4026 ppc ppc 4152366 4155017 - phosphoenolpyruvate carboxylase gene gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4026 N840_4027 N840_4027 argE argE 4155615 4156766 - acetylornithine deacetylase gene gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4027 N840_4028 N840_4028 argC argC 4156920 4157924 + N-acetyl-gamma-glutamylphosphate reductase%2C NAD(P)-binding protein N-acetyl-gamma-glutamylphosphate reductase gene gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4028 N840_4029 N840_4029 argB argB 4157932 4158708 + acetylglutamate kinase gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4029 N840_4030 N840_4030 argH argH 4158769 4160142 + argininosuccinate lyase gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4030 N840_4031 N840_4031 oxyS oxyS 4160204 4160313 - sRNA antisense regulator activates genes that detoxify oxidative damage%2C Hfq-dependent global regulatory RNA OxyS gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4031 N840_4032 N840_4032 oxyR oxyR 4160409 4161326 + oxidative and nitrosative stress transcriptional regulator activator%2C hydrogen peroxide-inducible genes gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4032 N840_4033 N840_4033 sthA sthA 4161309 4162709 - pyridine nucleotide transhydrogenase%2C soluble gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4033 N840_4034 N840_4034 fabR fabR 4163043 4163690 + DNA-binding transcriptional repressor gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4034 N840_4035 N840_4035 yijD yijD 4163690 4164049 + inner membrane protein%2C DUF1422 family gene gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4035 N840_4036 N840_4036 trmA trmA 4164089 4165189 - tRNA m(5)U54 methyltransferase%2C SAM-dependent gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4036 N840_4037 N840_4037 btuB btuB 4165558 4167402 + vitamin B12/cobalamin outer membrane transporter outer membrane receptor for transport of vitamin B12%2C E colicins%2C and bacteriophage BF23 gene gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4037 N840_4038 N840_4038 murI murI 4167347 4168204 + glutamate racemase glutamate racemase%2C required for biosynthesis of D-glutamate and peptidoglycan gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4038 N840_4039 N840_4039 rrsB rrsB 4168578 4170119 + 16S ribosomal RNA rRNA gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4039 N840_4040 N840_4040 gltT gltT 4170291 4170366 + tRNA-Glu anticodon: UUC tRNA gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4040 N840_4041 N840_4041 rrlB rrlB 4170560 4173463 + 23S ribosomal RNA rRNA gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4041 N840_4042 N840_4042 rrfB rrfB 4173556 4173675 + 5S ribosomal RNA rRNA gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4042 N840_4043 N840_4043 murB murB 4173976 4175004 + UDP-N-acetylenolpyruvoylglucosamine reductase%2C FAD-binding protein UDP-N-acetylenolpyruvoylglucosamine reductase gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4043 N840_4044 N840_4044 birA birA 4175001 4175966 + bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/ DNA-binding transcriptional repressor%2C bio-5'-AMP-binding protein biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4044 N840_4045 N840_4045 coaA coaA 4175995 4176945 - pantothenate kinase gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4045 N840_4046 N840_4046 thrU thrU 4177307 4177382 + tRNA-Thr anticodon: UGU tRNA gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4046 N840_4047 N840_4047 tyrU tyrU 4177391 4177475 + tRNA-Tyr anticodon: GUA tRNA gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4047 N840_4048 N840_4048 glyT glyT 4177592 4177666 + tRNA-Gly anticodon: UCC tRNA gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4048 N840_4049 N840_4049 thrT thrT 4177673 4177748 + tRNA-Thr anticodon: GGU tRNA gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4049 N840_4050 N840_4050 tufB tufB 4177863 4179047 + protein chain elongation factor EF-Tu (duplicate of tufA) gene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4050 N840_4051 N840_4051 secE secE 4179277 4179660 + preprotein translocase membrane subunit preprotein translocase gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4051 N840_4052 N840_4052 nusG nusG 4179662 4180207 + transcription termination factor component in transcription antitermination gene gene4072 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4052 N840_4053 N840_4053 rplK rplK 4180366 4180794 + 50S ribosomal subunit protein L11 gene gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4053 N840_4054 N840_4054 rplA rplA 4180798 4181502 + 50S ribosomal subunit protein L1 50S ribosomal subunit protein L1%2C regulates synthesis of L1 and L11 gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4054 N840_4055 N840_4055 rplJ rplJ 4181915 4182412 + 50S ribosomal subunit protein L10 gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4055 N840_4056 N840_4056 rplL rplL 4182479 4182844 + 50S ribosomal subunit protein L7/L12 gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4056 N840_4057 N840_4057 rpoB rpoB 4183164 4187192 + RNA polymerase%2C beta subunit gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4057 N840_4058 N840_4058 rpoC rpoC 4187269 4191492 + RNA polymerase%2C beta prime subunit gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4058 N840_4059 N840_4059 yjaZ yjaZ 4191705 4192244 + stationary phase growth adaptation protein heat shock protein htrC gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4059 N840_4060 N840_4060 sroH sroH 4192246 4192406 - novel sRNA%2C function unknown ncRNA gene4080 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4060 N840_4061 N840_4061 thiH thiH 4192654 4193787 - tyrosine lyase%2C involved in thiamin-thiazole moiety synthesis gene gene4081 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4061 N840_4062 N840_4062 thiG thiG 4193784 4194554 - thiamin biosynthesis ThiGH complex subunit thiamin (thiazole moiety) biosynthesis protein gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4062 N840_4063 N840_4063 thiS thiS 4194556 4194756 - immediate sulfur donor in thiazole formation sulfur carrier protein gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4063 N840_4064 N840_4064 thiF thiF 4194740 4195495 - adenylyltransferase%2C modifies ThiS C-terminus adenylyltransferase gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4064 N840_4065 N840_4065 thiE thiE 4195488 4196123 - thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) thiamin-phosphate synthase (thiamine-phosphate pyrophosphorylase) gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4065 N840_4066 N840_4066 thiC thiC 4196123 4198018 - thiamin (pyrimidine moiety) biosynthesis protein gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4066 N840_4067 N840_4067 rsd rsd 4198251 4198727 - stationary phase protein%2C binds sigma 70 RNA polymerase subunit gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4067 N840_4068 N840_4068 nudC nudC 4198822 4199595 + NADH pyrophosphatase gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4068 N840_4069 N840_4069 hemE hemE 4199635 4200699 + uroporphyrinogen decarboxylase gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4069 N840_4070 N840_4070 nfi nfi 4200709 4201380 + endonuclease V%3B deoxyinosine 3' endonuclease endonuclease V (deoxyinosine 3'endoduclease) gene gene4090 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4070 N840_4071 N840_4071 yjaG yjaG 4201423 4202013 + yjaG gene gene4091 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4071 N840_4072 N840_4072 hupA hupA 4202200 4202472 + HU%2C DNA-binding transcriptional regulator%2C alpha subunit DNA-binding protein HU-alpha (HU-2) gene gene4092 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4072 N840_4073 N840_4073 yjaH yjaH 4202485 4203180 + yjaH gene gene4093 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4073 N840_4074 N840_4074 zraP zraP 4203182 4203607 - Zn-dependent periplasmic chaperone gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4074 N840_4075 N840_4075 zraS zraS 4203845 4205242 + sensory histidine kinase in two-component regulatory system with ZraR gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4075 N840_4076 N840_4076 zraR zraR 4205239 4206564 + fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein gene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4076 N840_4077 N840_4077 purD purD 4206561 4207850 - phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase phosphoribosylglycinamide synthetase %3D GAR synthetase gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4077 N840_4078 N840_4078 purH purH 4207862 4209451 - fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4078 N840_4079 N840_4079 rrsE rrsE 4210066 4211607 + 16S ribosomal RNA rRNA gene4099 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4079 N840_4080 N840_4080 gltV gltV 4211693 4211768 + tRNA-Glu anticodon: UUC tRNA gene4100 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4080 N840_4081 N840_4081 rrlE rrlE 4211962 4214865 + 23S ribosomal RNA rRNA gene4101 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4081 N840_4082 N840_4082 rrfE rrfE 4214959 4215078 + 5S ribosomal RNA rRNA gene4102 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4082 N840_4083 N840_4083 yjaA yjaA 4215153 4215536 + conserved stress-induced protein gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4083 N840_4084 N840_4084 yjaB yjaB 4215599 4216042 - putative acetyltransferase gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4084 N840_4085 N840_4085 metA metA 4216199 4217128 + homoserine O-transsuccinylase gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4085 N840_4086 N840_4086 aceB aceB 4217397 4218998 + malate synthase A gene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4086 N840_4087 N840_4087 aceA aceA 4219028 4220332 + isocitrate lyase gene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4087 N840_4088 N840_4088 aceK aceK 4220515 4222251 + isocitrate dehydrogenase kinase/phosphatase gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4088 N840_4089 N840_4089 arpA arpA 4222220 4224406 - ankyrin repeat protein gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4089 N840_4090 N840_4090 iclR iclR 4224723 4225547 - DNA-binding transcriptional repressor repressor of aceBA operon gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4090 N840_4091 N840_4091 metH metH 4225747 4229430 + homocysteine-N5-methyltetrahydrofolate transmethylase%2C B12-dependent B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase%2C repressor of metE and metF gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4091 N840_4092 N840_4092 yjbB yjbB 4229650 4231281 + putative Na+/Pi-cotransporter putative alpha helix protein gene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4092 N840_4093 N840_4093 pepE pepE 4231372 4232061 - (alpha)-aspartyl dipeptidase peptidase E%2C a dipeptidase where amino-terminal residue is aspartate gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4093 N840_4094 N840_4094 rluF rluF 4232273 4233145 + 23S rRNA pseudouridine(2604) synthase gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4094 N840_4095 N840_4095 yjbD yjbD 4233278 4233550 - yjbD gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4095 N840_4096 N840_4096 lysC lysC 4233803 4235152 - aspartokinase III aspartokinase III%2C lysine sensitive gene gene4116 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4096 N840_4097 N840_4097 pgi pgi 4235677 4237326 + glucosephosphate isomerase gene gene4117 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4097 N840_4098 N840_4098 yjbE yjbE 4237825 4238067 + yjbE gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4098 N840_4099 N840_4099 yjbF yjbF 4238181 4238819 + putative lipoprotein gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4099 N840_4100 N840_4100 yjbG yjbG 4238816 4239553 + yjbG gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4100 N840_4101 N840_4101 yjbH yjbH 4239553 4241649 + putative porin gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4101 N840_4102 N840_4102 yjbT yjbT 4241696 4241974 - yjbT gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4102 N840_4103 N840_4103 psiE psiE 4242244 4242654 + phosphate starvation inducible protein gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4103 N840_4104 N840_4104 xylE xylE 4242698 4244173 - D-xylose transporter xylose-proton symport gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4104 N840_4105 N840_4105 malG malG 4244545 4245435 - maltose transporter subunit part of maltose permease%2C inner membrane%3B membrane component of ABC superfamily gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4105 N840_4106 N840_4106 malF malF 4245450 4246994 - maltose transporter subunit part of maltose permease%2C periplasmic%3B membrane component of ABC superfamily gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4106 N840_4107 N840_4107 malE malE 4247148 4248338 - maltose transporter subunit periplasmic maltose-binding protein%3B substrate recognition for transport and chemotaxis%3B periplasmic-binding component of ABC superfamily gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4107 N840_4108 N840_4108 malK malK 4248703 4249818 + fused maltose transport subunit%2C ATP-binding component of ABC superfamily/regulatory protein ATP-binding component of transport system for maltose gene gene4128 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4108 N840_4109 N840_4109 lamB lamB 4249890 4251230 + maltose outer membrane porin (maltoporin) phage lambda receptor protein%3B maltose high-affinity receptor gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4109 N840_4110 N840_4110 malM malM 4251473 4252393 + maltose regulon periplasmic protein periplasmic protein of mal regulon gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4110 N840_4111 N840_4111 yjbI yjbI 4252622 4254202 + pseudogene%2C pentapeptide repeat-related pseudogene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4111 N840_4112 N840_4112 ubiC ubiC 4254425 4254922 + chorismate--pyruvate lyase chorismate lyase gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4112 N840_4113 N840_4113 ubiA ubiA 4254935 4255807 + p-hydroxybenzoate octaprenyltransferase 4-hydroxybenzoate-octaprenyltransferase gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4113 N840_4114 N840_4114 plsB plsB 4255962 4258385 - glycerol-3-phosphate O-acyltransferase glycerol-3-phosphate acyltransferase gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4114 N840_4115 N840_4115 dgkA dgkA 4258556 4258924 + diacylglycerol kinase gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4115 N840_4116 N840_4116 lexA lexA 4259034 4259642 + DNA-binding transcriptional repressor of SOS regulon regulator for SOS(lexA) regulon gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4116 N840_4117 N840_4117 dinF dinF 4259661 4261040 + oxidative stress resistance protein%3B predicted MATE family efflux pump%3B UV and mitomycin C inducible protein DNA-damage-inducible protein F gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4117 N840_4118 N840_4118 yjbJ yjbJ 4261156 4261365 + stress-induced protein%2C UPF0337 family gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4118 N840_4119 N840_4119 zur zur 4261407 4261922 - DNA-binding transcriptional repressor%2C Zn(II)-binding protein gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4119 N840_4120 N840_4120 yjbL yjbL 4262240 4262494 + yjbL gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4120 N840_4121 N840_4121 yjbM yjbM 4262518 4263225 + yjbM gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4121 N840_4122 N840_4122 dusA dusA 4263633 4264625 + tRNA-dihydrouridine synthase A gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4122 N840_4123 N840_4123 pspG pspG 4264759 4265001 + phage shock protein G gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4123 N840_4124 N840_4124 qorA qorA 4265167 4266150 - quinone oxidoreductase%2C NADPH-dependent quinone oxidoreductase gene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4124 N840_4125 N840_4125 dnaB dnaB 4266233 4267648 + replicative DNA helicase replicative DNA helicase%3B part of primosome gene gene4145 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4125 N840_4126 N840_4126 alr alr 4267701 4268780 + alanine racemase 1%2C PLP-binding%2C biosynthetic alanine racemase 1 gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4126 N840_4127 N840_4127 tyrB tyrB 4269033 4270226 + tyrosine aminotransferase%2C tyrosine-repressible%2C PLP-dependent tyrosine aminotransferase%2C tyrosine repressible gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4127 N840_4128 N840_4128 yjbS yjbS 4270729 4270932 - yjbS gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4128 N840_4129 N840_4129 aphA aphA 4271334 4272047 + acid phosphatase/phosphotransferase%2C class B%2C non-specific diadenosine tetraphosphatase gene gene4149 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4129 N840_4130 N840_4130 yjbQ yjbQ 4272158 4272574 + thiamin phosphate synthase gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4130 N840_4131 N840_4131 yjbR yjbR 4272578 4272934 + yjbR gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4131 N840_4132 N840_4132 uvrA uvrA 4272969 4275791 - ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC excision nuclease subunit A gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4132 N840_4133 N840_4133 ssb ssb 4276045 4276581 + single-stranded DNA-binding protein ssDNA-binding protein gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4133 N840_4134 N840_4134 yjcB yjcB 4276680 4276961 - yjcB gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4134 N840_4135 N840_4135 yjcC yjcC 4277391 4278977 + putative membrane-anchored cyclic-di-GMP phosphodiesterase gene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4135 N840_4136 N840_4136 soxS soxS 4278980 4279303 - DNA-binding transcriptional dual regulator regulation of superoxide response regulon gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4136 N840_4137 N840_4137 soxR soxR 4279389 4279853 + DNA-binding transcriptional dual regulator%2C Fe-S center for redox-sensing redox-sensing activator of soxS gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4137 N840_4138 N840_4138 ryjA ryjA 4279847 4279986 - novel sRNA%2C function unknown identified in a large scale screen ncRNA gene4158 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4138 N840_4139 N840_4139 yjcD yjcD 4280399 4281748 + putative permease gene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4139 N840_4140 N840_4140 yjcE yjcE 4281900 4283549 + putative cation/proton antiporter gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4140 N840_4141 N840_4141 yjcF yjcF 4283703 4284995 - pentapeptide repeat protein gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4141 N840_4142 N840_4142 actP actP 4285173 4286822 - acetate transporter acetate permease%3B also transports glycolate with a rate high enough to support growth on this carbon source gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4142 N840_4143 N840_4143 yjcH yjcH 4286819 4287133 - inner membrane protein%2C DUF485 family gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4143 N840_4144 N840_4144 acs acs 4287333 4289291 - acetyl-CoA synthetase gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4144 N840_4145 N840_4145 nrfA nrfA 4289684 4291120 + nitrite reductase%2C formate-dependent%2C cytochrome periplasmic cytochrome c(552): plays a role in nitrite reduction gene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4145 N840_4146 N840_4146 nrfB nrfB 4291165 4291731 + nitrite reductase%2C formate-dependent%2C penta-heme cytochrome c formate-dependent nitrite reductase%3B a penta-haeme cytochrome c gene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4146 N840_4147 N840_4147 nrfC nrfC 4291728 4292399 + formate-dependent nitrite reductase%2C 4Fe4S subunit formate-dependent nitrite reductase%3B Fe-S centers gene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4147 N840_4148 N840_4148 nrfD nrfD 4292396 4293352 + formate-dependent nitrite reductase%2C membrane subunit formate-dependent nitrate reductase complex%3B transmembrane protein gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4148 N840_4149 N840_4149 nrfE nrfE 4293432 4295090 + heme lyase (NrfEFG) for insertion of heme into c552%2C subunit NrfE formate-dependent nitrite reductase%3B possible assembly function gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4149 N840_4150 N840_4150 nrfF nrfF 4295083 4295466 + heme lyase (NrfEFG) for insertion of heme into c552%2C subunit NrfF part of formate-dependent nitrite reductase complex gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4150 N840_4151 N840_4151 nrfG nrfG 4295463 4296059 + heme lyase (NrfEFG) for insertion of heme into c552%2C subunit NrfG part of formate-dependent nitrite reductase complex gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4151 N840_4152 N840_4152 gltP gltP 4296401 4297714 + glutamate/aspartate:proton symporter glutamate-aspartate symport protein gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4152 N840_4153 N840_4153 yjcO yjcO 4298358 4299047 - yjcO gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4153 N840_4154 N840_4154 fdhF fdhF 4299141 4301288 - selenopolypeptide subunit of formate dehydrogenase H%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4154 N840_4155 N840_4155 mdtP mdtP 4301486 4302952 - outer membrane factor of efflux pump putative enzyme gene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4155 N840_4156 N840_4156 mdtO mdtO 4302949 4305000 - membrane translocase (MDR) of MdtNOP efflux pump%2C PET family putative enzyme gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4156 N840_4157 N840_4157 mdtN mdtN 4305000 4306031 - membrane fusion protein of efflux pump putative membrane protein gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4157 N840_4158 N840_4158 ytcA ytcA 4306050 4306325 - ytcA gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4158 N840_4159 N840_4159 yjcS yjcS 4306534 4308519 - conserved protein%2C metallo-beta-lactamase superfamily gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4159 N840_4160 N840_4160 alsK alsK 4308792 4309721 - D-allose kinase gene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4160 N840_4161 N840_4161 alsE alsE 4309705 4310400 - allulose-6-phosphate 3-epimerase gene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4161 N840_4162 N840_4162 alsC alsC 4310411 4311391 - D-allose transporter subunit membrane component of ABC superfamily gene gene4182 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4162 N840_4163 N840_4163 alsA alsA 4311370 4312902 - fused D-allose transporter subunits of ABC superfamily: ATP-binding components gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4163 N840_4164 N840_4164 alsB alsB 4313029 4313964 - D-allose transporter subunit periplasmic-binding component of ABC superfamily gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4164 N840_4165 N840_4165 rpiR rpiR 4314023 4314913 - DNA-binding transcriptional repressor transcriptional repressor of rpiB expression gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4165 N840_4166 N840_4166 rpiB rpiB 4315272 4315721 + ribose 5-phosphate isomerase B/allose 6-phosphate isomerase ribose 5-phosphate isomerase B gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4166 N840_4167 N840_4167 yjdP yjdP 4315790 4316119 + yjdP conserved hypothetical protein%3B conserved in EDL933 and CFT073%3B on opposite strand of the now deaccessioned phnQ (b4091) gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4167 N840_4168 N840_4168 phnP phnP 4316266 4317024 - 5-phospho-alpha-D-ribosyl 1%2C2-cyclic phosphate phosphodiesterase phosphonate metabolism gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4168 N840_4169 N840_4169 phnO phnO 4317026 4317460 - putative aminoalkylphosphonic acid N-acetyltransferase putative regulator%2C phn operon gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4169 N840_4170 N840_4170 phnN phnN 4317447 4318004 - ribose 1%2C5-bisphosphokinase ATP-binding component of phosphonate transport gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4170 N840_4171 N840_4171 phnM phnM 4318004 4319140 - ribophosphonate triphosphate hydrolase phosphonate metabolism gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4171 N840_4172 N840_4172 phnL phnL 4319137 4319817 - ribophosphonate triphosphate synthase subunit%3B predicted ATP transporter ATP-binding protein ATP-binding component of phosphonate transport gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4172 N840_4173 N840_4173 phnK phnK 4319928 4320686 - carbon-phosphorus lyase complex subunit%2C putative ATP transporter ATP-binding protein ATP-binding component of phosphonate transport gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4173 N840_4174 N840_4174 phnJ phnJ 4320683 4321528 - carbon-phosphorus lyase%2C SAM-dependent phosphonate metabolism gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4174 N840_4175 N840_4175 phnI phnI 4321521 4322585 - ribophosphonate triphosphate synthase complex%2C probable catalytic subunit phosphonate metabolism gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4175 N840_4176 N840_4176 phnH phnH 4322585 4323169 - ribophosphonate triphosphate synthase subunit phosphonate metabolism gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4176 N840_4177 N840_4177 phnG phnG 4323166 4323618 - ribophosphonate triphosphate synthase subunit phosphonate metabolism gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4177 N840_4178 N840_4178 phnF phnF 4323619 4324344 - putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation putative transcriptional regulator gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4178 N840_4179 N840_4179 phnE phnE 4324365 4325152 - defective phosphonate ABC transporter permease%3Btransport%3B Transport of small molecules: Anions%3B membrane channel protein component of Pn transporter%3B membrane component of ABC superfamily pseudogene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4179 N840_4180 N840_4180 phnD phnD 4325258 4326274 - phosphonate ABC transporter periplasmic binding protein periplasmic binding protein component of Pn transporter%3B periplasmic binding component of ABC superfamily gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4180 N840_4181 N840_4181 phnC phnC 4326299 4327087 - phosphonate ABC transporter ATP-binding subunit ATP-binding component of phosphonate transport%3B ATP-binding component of ABC superfamily gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4181 N840_4182 N840_4182 yjdN yjdN 4327220 4327663 - yjdN gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4182 N840_4183 N840_4183 yjdM yjdM 4328321 4328656 - yjdM gene gene4203 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4183 N840_4184 N840_4184 yjdA yjdA 4329057 4331285 + mutational suppressor of yhjH motility mutation putative vimentin%3B related to Dynamin GTPase gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4184 N840_4185 N840_4185 yjcZ yjcZ 4331282 4332160 + mutational suppressor of yhjH motility mutation%2C function unknown gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4185 N840_4186 N840_4186 proP proP 4332424 4333926 + proline/glycine betaine transporter low-affinity transport system%3B proline permease II gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4186 N840_4187 N840_4187 pmrR pmrR 4334038 4334127 + putative regulator of BasS activity%2C membrane protein gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4187 N840_4188 N840_4188 basS basS 4334103 4335194 - sensory histidine kinase in two-component regulatory system with BasR sensor protein for basR gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4188 N840_4189 N840_4189 basR basR 4335204 4335872 - DNA-binding response regulator in two-component regulatory system with BasS transcriptional regulatory protein%2C member of 2-component regulatory system gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4189 N840_4190 N840_4190 eptA eptA 4335869 4337512 - lipid A phosphoethanolamine transferase gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4190 N840_4191 N840_4191 adiC adiC 4337616 4338953 - arginine:agmatine antiporter putative amino acid/amine transport protein%2C cryptic gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4191 N840_4192 N840_4192 adiY adiY 4339090 4339851 - DNA-binding transcriptional activator putative ARAC-type regulatory protein gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4192 N840_4193 N840_4193 adiA adiA 4340176 4342443 - arginine decarboxylase gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4193 N840_4194 N840_4194 melR melR 4342642 4343550 - DNA-binding transcriptional dual regulator regulator of melibiose operon gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4194 N840_4195 N840_4195 melA melA 4343833 4345188 + alpha-galactosidase%2C NAD(P)-binding protein alpha-galactosidase gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4195 N840_4196 N840_4196 melB melB 4345291 4346712 + melibiose:sodium symporter melibiose permease II gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4196 N840_4197 N840_4197 yjdF yjdF 4346851 4347480 - conserved inner membrane protein gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4197 N840_4198 N840_4198 fumB fumB 4347602 4349248 - anaerobic class I fumarate hydratase (fumarase B) fumarase B%3D fumarate hydratase Class I%3B anaerobic isozyme gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4198 N840_4199 N840_4199 dcuB dcuB 4349326 4350666 - C4-dicarboxylate transporter%2C anaerobic%3B DcuS co-sensor anaerobic dicarboxylate transport gene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4199 N840_4200 N840_4200 dcuR dcuR 4351237 4351956 - DNA-binding response regulator in two-component regulatory system with DcuS gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4200 N840_4201 N840_4201 dcuS dcuS 4351953 4353584 - sensory histidine kinase in two-component regulatory system with DcuR%2C regulator of anaerobic fumarate respiration gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4201 N840_4202 N840_4202 yjdI yjdI 4353765 4353995 + yjdI gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4202 N840_4203 N840_4203 yjdJ yjdJ 4354007 4354279 + putative acyltransferase with acyl-CoA N-acyltransferase domain gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4203 N840_4204 N840_4204 yjdK yjdK 4354506 4354802 + yjdK gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4204 N840_4205 N840_4205 yjdO yjdO 4354830 4355003 + yjdO gene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4205 N840_4206 N840_4206 lysU lysU 4355122 4356639 - lysine tRNA synthetase%2C inducible lysine tRNA synthetase%2C inducible%3B heat shock protein gene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4206 N840_4207 N840_4207 yjdL yjdL 4356876 4358333 - dipeptide and tripeptide permease putative peptide transporter gene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4207 N840_4208 N840_4208 cadA cadA 4358392 4360539 - lysine decarboxylase%2C acid-inducible gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4208 N840_4209 N840_4209 cadB cadB 4360619 4361953 - putative lysine/cadaverine transporter transport of lysine/cadaverine gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4209 N840_4210 N840_4210 cadC cadC 4362318 4363856 - DNA-binding transcriptional activator transcriptional activator of cad operon gene gene4230 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4210 N840_4211 N840_4211 yjdQ yjdQ 4364113 4364275 - pseudogene%2C P4-like integrase remnant%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4231 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4211 N840_4212 N840_4212 pheU pheU 4364473 4364548 - tRNA-Phe anticodon: GAA tRNA gene4232 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4212 N840_4213 N840_4213 yjdC yjdC 4364655 4365230 - putative transcriptional regulator gene gene4233 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4213 N840_4214 N840_4214 dsbD dsbD 4365267 4366964 - fused thiol:disulfide interchange protein: activator of DsbC/conserved protein thiol:disulfide interchange protein%3B copper tolerance gene gene4234 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4214 N840_4215 N840_4215 cutA cutA 4366940 4367278 - divalent-cation tolerance protein%2C copper sensitivity divalent cation tolerance protein%3B cytochrome c biogenesis gene gene4235 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4215 N840_4216 N840_4216 dcuA dcuA 4367394 4368695 - C4-dicarboxylate antiporter anaerobic dicarboxylate transport gene gene4236 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4216 N840_4217 N840_4217 aspA aspA 4368813 4370249 - aspartate ammonia-lyase aspartate ammonia-lyase (aspartase) gene gene4237 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4217 N840_4218 N840_4218 fxsA fxsA 4370586 4371062 + suppressor of F exclusion of phage T7 gene gene4238 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4218 N840_4219 N840_4219 yjeH yjeH 4371078 4372334 - putative transporter putative transport gene gene4239 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4219 N840_4220 N840_4220 groS groS 4372610 4372903 + Cpn10 chaperonin GroES%2C small subunit of GroESL GroES%2C 10 Kd chaperone binds to Hsp60 in pres. Mg-ATP%2C suppressing its ATPase activity gene gene4240 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4220 N840_4221 N840_4221 groL groL 4372947 4374593 + Cpn60 chaperonin GroEL%2C large subunit of GroESL gene gene4241 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4221 N840_4222 N840_4222 yjeI yjeI 4374731 4375084 + yjeI gene gene4242 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4222 N840_4223 N840_4223 yjeJ yjeJ 4375287 4376156 - yjeJ gene gene4243 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4223 N840_4224 N840_4224 epmB epmB 4376551 4377579 - EF-P-Lys34 lysylation protein%3B weak lysine 2%2C3-aminomutase gene gene4244 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4224 N840_4225 N840_4225 efp efp 4377621 4378187 + polyproline-specific translation elongation factor EF-P elongation factor P (EF-P) gene gene4245 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4225 N840_4226 N840_4226 ecnA ecnA 4378239 4378364 + entericidin A membrane lipoprotein%2C antidote entericidin B entericidin A%3B antidote to lipoprotein entericidin B%3B component of a chromosomally encoded addiction module gene gene4246 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4226 N840_4227 N840_4227 ecnB ecnB 4378475 4378621 + entericidin B membrane lipoprotein entericidin B%3B bacteriolytic lipoprotein%3B component of a chromosomally encoded addiction module gene gene4247 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4227 N840_4228 N840_4228 sugE sugE 4378797 4379114 + multidrug efflux system protein suppresses groEL%2C may be chaperone gene gene4248 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4228 N840_4229 N840_4229 blc blc 4379111 4379644 - outer membrane lipoprotein (lipocalin)%2C cell division and growth function gene gene4249 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4229 N840_4230 N840_4230 ampC ampC 4379733 4380866 - beta-lactamase/D-alanine carboxypeptidase beta-lactamase%3B penicillin resistance gene gene4250 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4230 N840_4231 N840_4231 frdD frdD 4380929 4381288 - fumarate reductase (anaerobic)%2C membrane anchor subunit fumarate reductase%2C anaerobic%2C membrane anchor polypeptide gene gene4251 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4231 N840_4232 N840_4232 frdC frdC 4381299 4381694 - fumarate reductase (anaerobic)%2C membrane anchor subunit fumarate reductase%2C anaerobic%2C membrane anchor polypeptide gene gene4252 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4232 N840_4233 N840_4233 frdB frdB 4381705 4382439 - fumarate reductase (anaerobic)%2C Fe-S subunit fumarate reductase%2C anaerobic%2C iron-sulfur protein subunit gene gene4253 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4233 N840_4234 N840_4234 frdA frdA 4382432 4384240 - fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit fumarate reductase%2C anaerobic%2C flavoprotein subunit gene gene4254 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4234 N840_4235 N840_4235 epmA epmA 4384565 4385542 + Elongation Factor P Lys34 lysyltransferase putative lysyl-tRNA synthetase gene gene4255 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4235 N840_4236 N840_4236 yjeM yjeM 4385761 4387263 + putative transporter putative transport gene gene4256 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4236 N840_4237 N840_4237 yjeN yjeN 4387315 4387629 + yjeN gene gene4257 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4237 N840_4238 N840_4238 yjeO yjeO 4387626 4387940 + inner membrane protein gene gene4258 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4238 N840_4239 N840_4239 mscM mscM 4387969 4391292 - mechanosensitive channel protein%2C miniconductance putative periplasmic binding protein gene gene4259 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4239 N840_4240 N840_4240 psd psd 4391314 4392282 - phosphatidylserine decarboxylase phosphatidylserine decarboxylase%3B phospholipid synthesis gene gene4260 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4240 N840_4241 N840_4241 rsgA rsgA 4392379 4393431 - ribosome small subunit-dependent GTPase A gene gene4261 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4241 N840_4242 N840_4242 orn orn 4393526 4394071 + oligoribonuclease gene gene4262 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4242 N840_4243 N840_4243 glyV glyV 4394282 4394357 + tRNA-Gly anticodon: GCC tRNA gene4263 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4243 N840_4244 N840_4244 glyX glyX 4394394 4394469 + tRNA-Gly anticodon: GCC tRNA gene4264 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4244 N840_4245 N840_4245 glyY glyY 4394505 4394580 + tRNA-Gly anticodon: GCC tRNA gene4265 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4245 N840_4246 N840_4246 yjeV yjeV 4394814 4394867 + yjeV expressed protein gene gene4266 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4246 N840_4247 N840_4247 queG queG 4394850 4395989 - epoxyqueuosine reductase%2C cobalamine-stimulated%3B queosine biosynthesis gene gene4267 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4247 N840_4248 N840_4248 nnr nnr 4395988 4397535 + bifunctional NAD(P)H-hydrate repair enzyme%3B C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase gene gene4268 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4248 N840_4249 N840_4249 tsaE tsaE 4397507 4397968 + tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein%3B ADP binding protein gene gene4269 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4249 N840_4250 N840_4250 amiB amiB 4397987 4399324 + N-acetylmuramoyl-l-alanine amidase II N-acetylmuramoyl-l-alanine amidase II%3B a murein hydrolase gene gene4270 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4250 N840_4251 N840_4251 mutL mutL 4399334 4401181 + methyl-directed mismatch repair protein enzyme in methyl-directed mismatch repair gene gene4271 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4251 N840_4252 N840_4252 miaA miaA 4401174 4402124 + delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase gene gene4272 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4252 N840_4253 N840_4253 hfq hfq 4402210 4402518 + global sRNA chaperone%3B HF-I%2C host factor for RNA phage Q beta replication host factor I for bacteriophage Q beta replication%2C a growth-related protein gene gene4273 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4253 N840_4254 N840_4254 hflX hflX 4402594 4403874 + GTPase%2C stimulated by 50S subunit binding protein GTP - binding subunit of protease specific for phage lambda cII repressor gene gene4274 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4254 N840_4255 N840_4255 hflK hflK 4403960 4405219 + modulator for HflB protease specific for phage lambda cII repressor protease specific for phage lambda cII repressor gene gene4275 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4255 N840_4256 N840_4256 hflC hflC 4405222 4406226 + modulator for HflB protease specific for phage lambda cII repressor protease specific for phage lambda cII repressor gene gene4276 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4256 N840_4257 N840_4257 yjeT yjeT 4406308 4406505 + conserved protein%2C DUF2065 family gene gene4277 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4257 N840_4258 N840_4258 purA purA 4406609 4407907 + adenylosuccinate synthetase gene gene4278 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4258 N840_4259 N840_4259 nsrR nsrR 4408112 4408537 + nitric oxide-sensitive repressor for NO regulon gene gene4279 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4259 N840_4260 N840_4260 rnr rnr 4408576 4411017 + exoribonuclease R%2C RNase R gene gene4280 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4260 N840_4261 N840_4261 rlmB rlmB 4411197 4411928 + 23S rRNA mG2251 2'-O-ribose methyltransferase%2C SAM-dependent gene gene4281 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4261 N840_4262 N840_4262 yjfI yjfI 4412055 4412456 + conserved protein%2C DUF2170 family gene gene4282 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4262 N840_4263 N840_4263 yjfJ yjfJ 4412475 4413173 + conserved protein%2C PspA/IM30 family putative alpha helical protein gene gene4283 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4263 N840_4264 N840_4264 yjfK yjfK 4413224 4413883 + conserved protein%2C DUF2491 family gene gene4284 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4264 N840_4265 N840_4265 yjfL yjfL 4413901 4414299 + inner membrane protein%2C UPF0719 family gene gene4285 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4265 N840_4266 N840_4266 yjfM yjfM 4414309 4414947 + conserved protein%2C DUF1190 family gene gene4286 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4266 N840_4267 N840_4267 yjfC yjfC 4414950 4416113 + glutathionylspermidine synthase-like protein putative synthetase/amidase gene gene4287 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4267 N840_4268 N840_4268 aidB aidB 4416197 4417822 + DNA alkylation damage repair protein%3B flavin-containing DNA binding protein%2C weak isovaleryl CoA dehydrogenase putative acyl coenzyme A dehydrogenase gene gene4288 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4268 N840_4269 N840_4269 yjfN yjfN 4417939 4418214 - yjfN gene gene4289 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4269 N840_4270 N840_4270 bsmA bsmA 4418363 4418692 - bioflm peroxide resistance protein gene gene4290 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4270 N840_4271 N840_4271 yjfP yjfP 4418874 4419623 + acyl CoA esterase gene gene4291 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4271 N840_4272 N840_4272 ulaR ulaR 4419620 4420375 - transcriptional tepressor for the L-ascorbate utilization (ula) divergon putative DEOR-type transcriptional regulator gene gene4292 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4272 N840_4273 N840_4273 ulaG ulaG 4420483 4421547 - L-ascorbate 6-phosphate lactonase gene gene4293 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4273 N840_4274 N840_4274 ulaA ulaA 4421902 4423299 + L-ascorbate-specific enzyme IIC component of PTS gene gene4294 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4274 N840_4275 N840_4275 ulaB ulaB 4423315 4423620 + L-ascorbate-specific enzyme IIB component of PTS gene gene4295 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4275 N840_4276 N840_4276 ulaC ulaC 4423630 4424094 + L-ascorbate-specific enzyme IIA component of PTS putative PTS system enzyme II A component gene gene4296 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4276 N840_4277 N840_4277 ulaD ulaD 4424108 4424758 + 3-keto-L-gulonate 6-phosphate decarboxylase probable hexulose-6-phosphate synthase gene gene4297 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4277 N840_4278 N840_4278 ulaE ulaE 4424768 4425622 + L-xylulose 5-phosphate 3-epimerase putative hexulose-6-phosphate isomerase gene gene4298 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4278 N840_4279 N840_4279 ulaF ulaF 4425622 4426308 + L-ribulose 5-phosphate 4-epimerase putative epimerase/aldolase gene gene4299 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4279 N840_4280 N840_4280 yjfY yjfY 4426438 4426712 - Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4300 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4280 N840_4281 N840_4281 rpsF rpsF 4427039 4427434 + 30S ribosomal subunit protein S6 gene gene4301 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4281 N840_4282 N840_4282 priB priB 4427441 4427755 + primosomal protein N primosomal replication protein N gene gene4302 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4282 N840_4283 N840_4283 rpsR rpsR 4427760 4427987 + 30S ribosomal subunit protein S18 gene gene4303 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4283 N840_4284 N840_4284 rplI rplI 4428029 4428478 + 50S ribosomal subunit protein L9 gene gene4304 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4284 N840_4285 N840_4285 yjfZ yjfZ 4428549 4429343 - yjfZ gene gene4305 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4285 N840_4286 N840_4286 ytfA ytfA 4429615 4430016 + pseudogene%2C related to transcriptional regulators%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4306 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4286 N840_4287 N840_4287 ytfB ytfB 4430000 4430638 - putative cell envelope opacity-associated protein gene gene4307 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4287 N840_4288 N840_4288 fklB fklB 4430856 4431476 + FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) gene gene4308 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4288 N840_4289 N840_4289 cycA cycA 4431785 4433197 + D-alanine/D-serine/glycine transporter transport of D-alanine%2C D-serine%2C and glycine gene gene4309 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4289 N840_4290 N840_4290 ytfE ytfE 4433242 4433904 - iron-sulfur cluster repair protein RIC gene gene4310 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4290 N840_4291 N840_4291 ytfF ytfF 4434012 4434977 - inner membrane protein%2C DMT transporter family putative transmembrane subunit gene gene4311 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4291 N840_4292 N840_4292 qorB qorB 4435085 4435945 - NAD(P)H:quinone oxidoreductase putative oxidoreductase gene gene4312 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4292 N840_4293 N840_4293 ytfH ytfH 4436034 4436414 + putative transcriptional regulator%2C HxlR-type%2C DUF24 family gene gene4313 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4293 N840_4294 N840_4294 cpdB cpdB 4436543 4438486 - 2':3'-cyclic-nucleotide 2'-phosphodiesterase gene gene4314 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4294 N840_4295 N840_4295 cysQ cysQ 4438676 4439416 + PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2')%2C5'-bisphosphate nucleotidase affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis gene gene4315 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4295 N840_4296 N840_4296 ytfI ytfI 4439628 4440566 + ytfI gene gene4316 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4296 N840_4297 N840_4297 ytfJ ytfJ 4440629 4441183 - putative transcriptional regulator gene gene4317 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4297 N840_4298 N840_4298 ytfK ytfK 4441508 4441714 + conserved protein%2C DUF1107 family gene gene4318 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4298 N840_4299 N840_4299 ytfL ytfL 4441793 4443136 - inner membrane protein%2C UPF0053 family putative transport protein gene gene4319 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4299 N840_4300 N840_4300 msrA msrA 4443459 4444097 - methionine sulfoxide reductase A peptide methionine sulfoxide reductase gene gene4320 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4300 N840_4301 N840_4301 tamA tamA 4444303 4446036 + translocation and assembly module for autotransporter export%2C outer membrane subunit gene gene4321 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4301 N840_4302 N840_4302 tamB tamB 4446033 4449811 + Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4322 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4302 N840_4303 N840_4303 ytfP ytfP 4449814 4450155 + GGCT-like protein gene gene4323 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4303 N840_4304 N840_4304 chpS chpS 4450367 4450618 + antitoxin of the ChpBS toxin-antitoxin system suppressor of inhibitory function of ChpB%2C PemI-like%2C autoregulated gene gene4324 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4304 N840_4305 N840_4305 chpB chpB 4450612 4450962 + toxin of the ChpB-ChpS toxin-antitoxin system probable growth inhibitor%2C PemK-like%2C autoregulated gene gene4325 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4305 N840_4306 N840_4306 ppa ppa 4451042 4451572 - inorganic pyrophosphatase gene gene4326 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4306 N840_4307 N840_4307 ytfQ ytfQ 4451882 4452838 + galactofuranose binding proteint: periplasmic-binding component of ABC superfamily putative LACI-type transcriptional regulator gene gene4327 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4307 N840_4308 N840_4308 ytfR ytfR 4452978 4454480 + putative sugar transporter subunit: ATP-binding component of ABC superfamily putative sugar transport protein (ABC superfamily%2C atp_bind) gene gene4328 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4308 N840_4309 N840_4309 ytfT ytfT 4454491 4455516 + putative sugar transporter subunit: membrane component of ABC superfamily putative transport system permease protein gene gene4329 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4309 N840_4310 N840_4310 yjfF yjfF 4455503 4456498 + putative sugar transporter subunit: membrane component of ABC superfamily putative transport system permease protein gene gene4330 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4310 N840_4311 N840_4311 fbp fbp 4456531 4457529 - fructose-1%2C6-bisphosphatase I gene gene4331 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4311 N840_4312 N840_4312 mpl mpl 4457705 4459078 + UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase gene gene4332 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4312 N840_4313 N840_4313 yjgA yjgA 4459234 4459785 - conserved protein%2C ribosome-associated putative alpha helix protein gene gene4333 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4313 N840_4314 N840_4314 pmbA pmbA 4459879 4461231 + putative peptidase required for the maturation and secretion of the antibiotic peptide MccB17 maturation of antibiotic MccB17%2C see tld genes gene gene4334 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4314 N840_4315 N840_4315 cybC cybC 4461410 4461775 + pseudogene%2C truncated cytochrome b562%3B cytochrome b(562) pseudogene gene4335 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4315 N840_4316 N840_4316 nrdG nrdG 4461820 4462284 - anaerobic ribonucleotide reductase activating protein gene gene4336 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4316 N840_4317 N840_4317 nrdD nrdD 4462442 4464580 - anaerobic ribonucleoside-triphosphate reductase gene gene4337 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4317 N840_4318 N840_4318 treC treC 4464974 4466629 - trehalose-6-P hydrolase trehalase 6-P hydrolase gene gene4338 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4318 N840_4319 N840_4319 treB treB 4466679 4468100 - fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component PTS system enzyme II%2C trehalose specific gene gene4339 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4319 N840_4320 N840_4320 treR treR 4468219 4469166 - DNA-binding transcriptional repressor repressor of treA%2CB%2CC gene gene4340 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4320 N840_4321 N840_4321 mgtL mgtL 4469351 4469404 + regulatory leader peptide for mgtA gene gene4341 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4321 N840_4322 N840_4322 mgtA mgtA 4469545 4472241 + magnesium transporter Mg2+ transport ATPase%2C P-type 1 gene gene4342 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4322 N840_4323 N840_4323 ridA ridA 4472447 4472833 - conserved protein%2C UPF0131 family gene gene4343 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4323 N840_4324 N840_4324 pyrI pyrI 4472906 4473367 - aspartate carbamoyltransferase%2C regulatory subunit gene gene4344 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4324 N840_4325 N840_4325 pyrB pyrB 4473380 4474315 - aspartate carbamoyltransferase%2C catalytic subunit gene gene4345 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4325 N840_4326 N840_4326 pyrL pyrL 4474319 4474453 - pyrBI operon leader peptide gene gene4346 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4326 N840_4327 N840_4327 yjgH yjgH 4474734 4475129 - conserved protein%2C UPF0131 family gene gene4347 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4327 N840_4328 N840_4328 bdcA bdcA 4475260 4475973 - c-di-GMP-binding biofilm dispersal mediator protein putative oxidoreductase gene gene4348 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4328 N840_4329 N840_4329 bdcR bdcR 4476044 4476638 + Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013.%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4349 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4329 N840_4330 N840_4330 tabA tabA 4476783 4477235 + biofilm modulator regulated by toxins gene gene4350 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4330 N840_4331 N840_4331 yjgL yjgL 4477358 4479172 + yjgL gene gene4351 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4331 N840_4332 N840_4332 argI argI 4479228 4480232 - ornithine carbamoyltransferase 1 gene gene4352 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4332 N840_4333 N840_4333 rraB rraB 4480394 4480810 + protein inhibitor of RNase E gene gene4353 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4333 N840_4334 N840_4334 yjgM yjgM 4480955 4481458 - putative acetyltransferase putative acyltransferase gene gene4354 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4334 N840_4335 N840_4335 yjgN yjgN 4481651 4482847 + inner membrane protein%2C DUF898 family gene gene4355 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4335 N840_4336 N840_4336 valS valS 4482903 4485758 - valyl-tRNA synthetase valine tRNA synthetase gene gene4356 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4336 N840_4337 N840_4337 holC holC 4485758 4486201 - DNA polymerase III%2C chi subunit gene gene4357 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4337 N840_4338 N840_4338 pepA pepA 4486361 4487872 - multifunctional aminopeptidase A: a cyteinylglycinase%2C transcription regulator and site-specific recombination factor aminopeptidase A/I gene gene4358 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4338 N840_4339 N840_4339 lptF lptF 4488139 4489239 + lipopolysaccharide export ABC permease of the LptBFGC export complex gene gene4359 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4339 N840_4340 N840_4340 lptG lptG 4489239 4490321 + lipopolysaccharide export ABC permease of the LptBFGC export complex gene gene4360 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4340 N840_4341 N840_4341 yjgR yjgR 4490482 4491984 - conserved protein%2C DUF853 family with NTPase fold gene gene4361 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4341 N840_4342 N840_4342 idnR idnR 4492051 4493049 - DNA-binding transcriptional repressor%2C 5-gluconate-binding protein gene gene4362 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4342 N840_4343 N840_4343 idnT idnT 4493116 4494435 - L-idonate and D-gluconate transporter gene gene4363 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4343 N840_4344 N840_4344 idnO idnO 4494497 4495261 - 5-keto-D-gluconate-5-reductase gene gene4364 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4344 N840_4345 N840_4345 idnD idnD 4495285 4496316 - L-idonate 5-dehydrogenase%2C NAD-binding protein gene gene4365 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4345 N840_4346 N840_4346 idnK idnK 4496533 4497096 + D-gluconate kinase%2C thermosensitive gene gene4366 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4346 N840_4347 N840_4347 yjgB yjgB 4497100 4498119 - putative alcohol dehydrogenase%2C Zn-dependent and NAD(P)-binding protein putative oxidoreductase gene gene4367 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4347 N840_4348 N840_4348 leuX leuX 4498315 4498399 + tRNA-Leu anticodon: UAA tRNA gene4368 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4348 N840_4349 N840_4349 intB intB 4498585 4499850 + pseudogene%2C integrase homology%3BIS%2C phage%2C Tn%3B Phage-related functions and prophages%3B KpLE2 phage-like element%3B P4-like integrase pseudogene gene4369 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4349 N840_4350 N840_4350 insC1 insC1 4500182 4500547 + IS2 repressor TnpA gene gene4370 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4350 N840_4351 N840_4351 insD1 insD1 4500505 4501410 + IS2 transposase TnpB gene gene4371 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4351 N840_4352 N840_4352 yjgX yjgX 4501503 4502701 - KpLE2 phage-like element%3B putative protein%2C C-ter fragment (pseudogene) pseudogene gene4372 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4352 N840_4353 N840_4353 yjgZ yjgZ 4503170 4503499 + KpLE2 phage-like element%3B putative protein gene gene4373 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4353 N840_4354 N840_4354 insG insG 4504013 4505341 - IS4 transposase gene gene4374 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4354 N840_4355 N840_4355 yjhB yjhB 4505968 4507185 + putative transporter putative transport protein gene gene4375 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4355 N840_4356 N840_4356 yjhC yjhC 4507197 4508315 + putative oxidoreductase putative dehydrogenase gene gene4376 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4356 N840_4357 N840_4357 ythA ythA 4508358 4508483 + ythA expressed protein gene gene4377 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4357 N840_4358 N840_4358 yjhD yjhD 4508536 4508766 - pseudogene%2C KpLE2 phage-like element pseudogene gene4378 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4358 N840_4359 N840_4359 yjhE yjhE 4508771 4509019 + pseudogene%2C KpLE2 phage-like element%3B predicted membrane protein pseudogene gene4379 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4359 N840_4360 N840_4360 insO insO 4509107 4511703 + pseudogene%2C IS911 transposase B%3BIS%2C phage%2C Tn%3B Transposon-related functions%3B extrachromosomal%3B transposon related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4380 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4360 N840_4361 N840_4361 insI1 insI1 4509376 4510527 - IS30 transposase gene gene4381 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4361 N840_4362 N840_4362 insM insM 4510586 4510852 - pseudogene%2C IS600 transposase%3BIS%2C phage%2C Tn%3B Transposon-related functions%3B extrachromosomal%3B transposon related%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4382 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4362 N840_4363 N840_4363 yjhV yjhV 4511714 4512043 + pseudogene%2C KpLE2 phage-like element%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4383 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4363 N840_4364 N840_4364 fecE fecE 4512600 4513367 - ATP-binding component of citrate-dependent iron(III) transport protein%3B ATP-binding component of ABC superfamily%3B Known internal stop codons resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4384 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4364 N840_4365 N840_4365 fecD fecD 4513368 4514324 - KpLE2 phage-like element%3B iron-dicitrate transporter subunit citrate-dependent iron transport%2C membrane-bound protein%3B membrane component of ABC superfamily gene gene4385 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4365 N840_4366 N840_4366 fecC fecC 4514321 4515319 - KpLE2 phage-like element%3B iron-dicitrate transporter subunit citrate-dependent iron(III) transport protein%2C cytosolic%3B membrane component of ABC superfamily gene gene4386 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4366 N840_4367 N840_4367 fecB fecB 4515316 4516218 - KpLE2 phage-like element%3B iron-dicitrate transporter subunit citrate-dependent iron transport%2C periplasmic protein%3B periplasmic-binding component of ABC superfamily gene gene4387 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4367 N840_4368 N840_4368 fecA fecA 4516263 4518587 - KpLE2 phage-like element%3B ferric citrate outer membrane transporter outer membrane receptor%3B citrate-dependent iron transport%2C outer membrane receptor gene gene4388 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4368 N840_4369 N840_4369 fecR fecR 4518674 4519627 - KpLE2 phage-like element%3B transmembrane signal transducer for ferric citrate transport regulator for fec operon%2C periplasmic gene gene4389 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4369 N840_4370 N840_4370 fecI fecI 4519624 4520145 - KpLE2 phage-like element%3B RNA polymerase%2C sigma 19 factor probable RNA polymerase sigma factor gene gene4390 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4370 N840_4371 N840_4371 insA insA 4520437 4520712 + IS1 repressor TnpA insA6 gene gene4391 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4371 N840_4372 N840_4372 insB1 insB1 4520631 4521134 + IS1 transposase B%3BIS%2C phage%2C Tn%3B Transposon-related functions%3B extrachromosomal%3B transposon related pseudogene gene4392 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4372 N840_4373 N840_4373 yjhU yjhU 4521248 4522234 - putative DNA-binding transcriptional regulator%3B KpLE2 phage-like element gene gene4393 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4373 N840_4374 N840_4374 yjhF yjhF 4522581 4523930 - KpLE2 phage-like element%3B predicted transporter putative transport system permease gene gene4394 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4374 N840_4375 N840_4375 yjhG yjhG 4524037 4526004 - KpLE2 phage-like element%3B predicted dehydratase putative dehydratase gene gene4395 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4375 N840_4376 N840_4376 yjhH yjhH 4526015 4526920 - KpLE2 phage-like element%3B predicted lyase/synthase putative lyase/synthase gene gene4396 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4376 N840_4377 N840_4377 yjhI yjhI 4526925 4527713 - KpLE2 phage-like element%3B predicted DNA-binding transcriptional regulator putative regulator gene gene4397 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4377 N840_4378 N840_4378 sgcR sgcR 4528016 4528798 - KpLE2 phage-like element%3B predicted DNA-binding transcriptional regulator putative DEOR-type transcriptional regulator gene gene4398 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4378 N840_4379 N840_4379 sgcE sgcE 4528815 4529447 - KpLE2 phage-like element%3B predicted epimerase putative epimerase gene gene4399 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4379 N840_4380 N840_4380 sgcA sgcA 4529459 4529890 - KpLE2 phage-like element%3B predicted phosphotransferase enzyme IIA component putative PTS system enzyme II A component gene gene4400 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4380 N840_4381 N840_4381 ryjB ryjB 4529887 4529976 + novel sRNA%2C function unknown ncRNA gene4401 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4381 N840_4382 N840_4382 sgcQ sgcQ 4530021 4530827 - KpLE2 phage-like element%3B predicted nucleoside triphosphatase putative nucleoside triphosphatase gene gene4402 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4382 N840_4383 N840_4383 sgcC sgcC 4530840 4532153 - KpLE2 phage-like element%3B predicted phosphotransferase enzyme IIC component putative PTS system enzyme IIC component gene gene4403 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4383 N840_4384 N840_4384 sgcB sgcB 4532165 4532443 - putative enzyme IIB component of PTS gene gene4404 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4384 N840_4385 N840_4385 sgcX sgcX 4532440 4533561 - KpLE2 phage-like element%3B predicted endoglucanase with Zn-dependent exopeptidase domain putative lyase/synthase gene gene4405 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4385 N840_4386 N840_4386 yjhY yjhY 4533960 4534220 - pseudogene%2C novel zinc finger family pseudogene gene4406 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4386 N840_4387 N840_4387 yjhP yjhP 4534347 4535093 - KpLE2 phage-like element%3B predicted methyltransferase putative methyltransferase gene gene4407 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4387 N840_4388 N840_4388 yjhQ yjhQ 4535149 4535694 - KpLE2 phage-like element%3B predicted acetyltransferase gene gene4408 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4388 N840_4389 N840_4389 yjhX yjhX 4535706 4535963 - yjhX gene gene4409 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4389 N840_4390 N840_4390 yjhZ yjhZ 4536340 4536585 - pseudogene%2C rimK paralog%2C C-terminal fragment pseudogene gene4410 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4390 N840_4391 N840_4391 yjhR yjhR 4536701 4537941 + pseudogene%2C helicase family%3B putative frameshift suppressor%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4411 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4391 N840_4392 N840_4392 nanS nanS 4538524 4539504 - 9-O-acetyl N-acetylneuraminic acid esterase gene gene4412 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4392 N840_4393 N840_4393 nanM nanM 4539569 4540675 - N-acetylneuraminic acid mutarotase gene gene4413 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4393 N840_4394 N840_4394 nanC nanC 4540695 4541411 - N-acetylnuraminic acid outer membrane channel protein gene gene4414 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4394 N840_4395 N840_4395 fimB fimB 4542867 4543469 + tyrosine recombinase/inversion of on/off regulator of fimA recombinase involved in phase variation%3B regulator for fimA gene gene4415 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4395 N840_4396 N840_4396 fimE fimE 4543947 4544543 + tyrosine recombinase/inversion of on/off regulator of fimA recombinase involved in phase variation%3B regulator for fimA gene gene4416 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4396 N840_4397 N840_4397 fimA fimA 4545025 4545573 + major type 1 subunit fimbrin (pilin) gene gene4417 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4397 N840_4398 N840_4398 fimI fimI 4545638 4546177 + fimbrial protein involved in type 1 pilus biosynthesis fimbrial protein gene gene4418 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4398 N840_4399 N840_4399 fimC fimC 4546214 4546939 + periplasmic chaperone periplasmic chaperone%2C required for type 1 fimbriae gene gene4419 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4399 N840_4400 N840_4400 fimD fimD 4547006 4549642 + outer membrane usher protein%2C type 1 fimbrial synthesis outer membrane protein%3B export and assembly of type 1 fimbriae%2C interrupted gene gene4420 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4400 N840_4401 N840_4401 fimF fimF 4549652 4550182 + minor component of type 1 fimbriae fimbrial morphology gene gene4421 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4401 N840_4402 N840_4402 fimG fimG 4550195 4550698 + minor component of type 1 fimbriae fimbrial morphology gene gene4422 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4402 N840_4403 N840_4403 fimH fimH 4550718 4551620 + minor component of type 1 fimbriae minor fimbrial subunit%2C D-mannose specific adhesin gene gene4423 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4403 N840_4404 N840_4404 gntP gntP 4551863 4553206 - fructuronate transporter gluconate transport system permease 3 gene gene4424 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4404 N840_4405 N840_4405 uxuA uxuA 4553546 4554730 + mannonate hydrolase gene gene4425 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4405 N840_4406 N840_4406 uxuB uxuB 4554811 4556271 + D-mannonate oxidoreductase%2C NAD-dependent D-mannonate oxidoreductase gene gene4426 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4406 N840_4407 N840_4407 uxuR uxuR 4556486 4557259 + DNA-binding transcriptional repressor regulator for uxu operon gene gene4427 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4407 N840_4408 N840_4408 yjiC yjiC 4557400 4558230 - yjiC gene gene4428 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4408 N840_4409 N840_4409 iraD iraD 4558903 4559295 + RpoS stabilzer after DNA damage%2C anti-RssB factor gene gene4429 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4409 N840_4410 N840_4410 yjiE yjiE 4559288 4560199 - hypochlorite-responsive transcription factor putative transcriptional regulator LYSR-type gene gene4430 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4410 N840_4411 N840_4411 iadA iadA 4560264 4561436 - isoaspartyl dipeptidase gene gene4431 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4411 N840_4412 N840_4412 yjiG yjiG 4561449 4561910 - inner membrane protein%2C SpmB family gene gene4432 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4412 N840_4413 N840_4413 yjiH yjiH 4561907 4562590 - putative inner membrane protein gene gene4433 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4413 N840_4414 N840_4414 kptA kptA 4562840 4563394 + RNA 2'-phosphotransferase gene gene4434 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4414 N840_4415 N840_4415 yjiJ yjiJ 4563407 4564585 - putative inner membrane protein putative transport protein gene gene4435 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4415 N840_4416 N840_4416 yjiK yjiK 4564653 4565513 - yjiK gene gene4436 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4416 N840_4417 N840_4417 yjiL yjiL 4565832 4566599 - putative ATPase%2C activator of (R)-hydroxyglutaryl-CoA dehydratase putative enzyme gene gene4437 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4417 N840_4418 N840_4418 yjiM yjiM 4566609 4567760 - putative 2-hydroxyglutaryl-CoA dehydratase gene gene4438 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4418 N840_4419 N840_4419 yjiN yjiN 4567876 4569156 - zinc-type alcohol dehydrogenase-like protein gene gene4439 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4419 N840_4420 N840_4420 mdtM mdtM 4569197 4570429 - multidrug efflux system protein putative transport protein gene gene4440 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4420 N840_4421 N840_4421 yjiP yjiP 4570908 4571828 + pseudogene%2C transposase homology pseudogene gene4441 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4421 N840_4422 N840_4422 yjiR yjiR 4572072 4573484 - fused predicted DNA-binding transcriptional regulator/predicted aminotransferase putative regulator gene gene4442 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4422 N840_4423 N840_4423 yjiS yjiS 4573661 4573825 + yjiS gene gene4443 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4423 N840_4424 N840_4424 yjiT yjiT 4574324 4575826 + pseudogene%3B Known absence of valid in-frame stop codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4444 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4424 N840_4425 N840_4425 yjiV yjiV 4575829 4578765 + pseudogene%3B conserved hypothetical protein%3B Known invalid start codon resulting from off-target mutations introduced during UAG recoding in Lajoie et al.%2C 2013. pseudogene gene4445 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4425 N840_4426 N840_4426 mcrC mcrC 4578822 4579868 - 5-methylcytosine-specific restriction enzyme McrBC%2C subunit McrC component of McrBC 5-methylcytosine restriction system%2C expands range of sequences restricted gene gene4446 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4426 N840_4427 N840_4427 mcrB mcrB 4579868 4581247 - 5-methylcytosine-specific restriction enzyme McrBC%2C subunit McrB component of McrBC 5-methylcytosine restriction system gene gene4447 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4427 N840_4428 N840_4428 symE symE 4581409 4581750 - toxic peptide regulated by antisense sRNA symR gene gene4448 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4428 N840_4429 N840_4429 symR symR 4581745 4581821 + sRNA antisense regulator destabilizing divergent and overlapping symE mRNA gene gene4449 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4429 N840_4430 N840_4430 hsdS hsdS 4581978 4583372 - specificity determinant for hsdM and hsdR gene gene4450 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4430 N840_4431 N840_4431 hsdM hsdM 4583369 4584958 - DNA methyltransferase M host modification%3B DNA methylase M gene gene4451 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4431 N840_4432 N840_4432 hsdR hsdR 4585159 4588671 - endonuclease R Type I restriction enzyme host restriction%3B endonuclease R gene gene4452 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4432 N840_4433 N840_4433 mrr mrr 4588859 4589773 + methylated adenine and cytosine restriction protein restriction of methylated adenine gene gene4453 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4433 N840_4434 N840_4434 yjiA yjiA 4589819 4590775 - putative GTPase gene gene4454 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4434 N840_4435 N840_4435 yjiX yjiX 4590786 4590989 - yjiX gene gene4455 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4435 N840_4436 N840_4436 yjiY yjiY 4591039 4593189 - putative inner membrane protein putative carbon starvation protein gene gene4456 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4436 N840_4437 N840_4437 tsr tsr 4593567 4595222 + methyl-accepting chemotaxis protein I%2C serine sensor receptor gene gene4457 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4437 N840_4438 N840_4438 yjjL yjjL 4595271 4596632 - L-galactonate transporter putative transport protein%2C cryptic%2C orf%2C joins former yjiZ and yjjL gene gene4458 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4438 N840_4439 N840_4439 yjjM yjjM 4596847 4597761 - DNA-binding transcriptional activator for yjjMN%3B mutants fail to grow on L-galactonate gene gene4459 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4439 N840_4440 N840_4440 yjjN yjjN 4597900 4598922 + L-galactonate oxidoreductase putative oxidoreductase gene gene4460 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4440 N840_4441 N840_4441 opgB opgB 4599060 4601351 - phosphoglycerol transferases I and II gene gene4461 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4441 N840_4442 N840_4442 yjjA yjjA 4601605 4602099 - yjjA putative glycoprotein/receptor gene gene4462 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4442 N840_4443 N840_4443 dnaC dnaC 4602148 4602885 - DNA biosynthesis protein chromosome replication%3B initiation and chain elongation gene gene4463 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4443 N840_4444 N840_4444 dnaT dnaT 4602888 4603427 - DNA biosynthesis protein (primosomal protein I) DNA biosynthesis%3B primosomal protein i gene gene4464 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4444 N840_4445 N840_4445 yjjB yjjB 4603534 4604007 - conserved inner membrane protein gene gene4465 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4445 N840_4446 N840_4446 yjjP yjjP 4603998 4604768 - inner membrane protein%2C H-NS-repressed%2C DUF1212 family putative structural protein gene gene4466 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4446 N840_4447 N840_4447 yjjQ yjjQ 4605387 4606112 + DNA-binding transcriptional regulator putative regulator gene gene4467 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4447 N840_4448 N840_4448 bglJ bglJ 4606070 4606747 + bgl operon transcriptional activator 2-component transcriptional regulator gene gene4468 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4448 N840_4449 N840_4449 fhuF fhuF 4606785 4607573 - ferric iron reductase involved in ferric hydroximate transport gene gene4469 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4449 N840_4450 N840_4450 yjjZ yjjZ 4607714 4607950 + yjjZ gene gene4470 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4450 N840_4451 N840_4451 leuV leuV 4607989 4608075 - tRNA-Leu anticodon: CAG tRNA gene4471 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4451 N840_4452 N840_4452 leuP leuP 4608110 4608196 - tRNA-Leu anticodon: CAG tRNA gene4472 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4452 N840_4453 N840_4453 leuQ leuQ 4608225 4608311 - tRNA-Leu anticodon: CAG tRNA gene4473 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4453 N840_4454 N840_4454 rsmC rsmC 4608579 4609610 - 16S rRNA m(2)G1207 methyltransferase%2C SAM-dependent gene gene4474 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4454 N840_4455 N840_4455 holD holD 4609713 4610126 + DNA polymerase III%2C psi subunit gene gene4475 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4455 N840_4456 N840_4456 rimI rimI 4610095 4610541 + ribosomal-protein-S18-alanine N-acetyltransferase acyltransferase for 30S ribosomal subunit protein S18%3B acetylation of N-terminal alanine gene gene4476 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4456 N840_4457 N840_4457 yjjG yjjG 4610556 4611233 + dUMP phosphatase putative phosphatase gene gene4477 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4457 N840_4458 N840_4458 prfC prfC 4611324 4612913 + peptide chain release factor RF-3 gene gene4478 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4458 N840_4459 N840_4459 osmY osmY 4613306 4613911 + periplasmic protein hyperosmotically inducible periplasmic protein gene gene4479 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4459 N840_4460 N840_4460 ytjA ytjA 4614038 4614199 + ytjA gene gene4480 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4460 N840_4461 N840_4461 yjjU yjjU 4614321 4615394 + putative phospholipase%2C patatin-like family gene gene4481 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4461 N840_4462 N840_4462 yjjV yjjV 4615391 4616170 + putative DNase gene gene4482 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4462 N840_4463 N840_4463 yjjW yjjW 4616590 4617453 - putative pyruvate formate lyase activating enzyme putative activating enzyme gene gene4483 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4463 N840_4464 N840_4464 yjjI yjjI 4617425 4618975 - yjjI gene gene4484 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4464 N840_4465 N840_4465 deoC deoC 4619233 4620012 + 2-deoxyribose-5-phosphate aldolase%2C NAD(P)-linked 2-deoxyribose-5-phosphate aldolase gene gene4485 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4465 N840_4466 N840_4466 deoA deoA 4620139 4621452 + thymidine phosphorylase gene gene4486 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4466 N840_4467 N840_4467 deoB deoB 4621504 4622727 + phosphopentomutase gene gene4487 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4467 N840_4468 N840_4468 deoD deoD 4622784 4623503 + purine-nucleoside phosphorylase gene gene4488 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4468 N840_4469 N840_4469 yjjJ yjjJ 4623670 4625001 + putative protein kinase gene gene4489 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4469 N840_4470 N840_4470 lplA lplA 4625002 4626018 - lipoate-protein ligase A gene gene4490 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4470 N840_4471 N840_4471 ytjB ytjB 4626046 4626690 - conserved membrane protein gene gene4491 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4471 N840_4472 N840_4472 serB serB 4626796 4627764 + 3-phosphoserine phosphatase gene gene4492 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4472 N840_4473 N840_4473 radA radA 4627813 4629195 + DNA repair protein probable ATP-dependent protease gene gene4493 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4473 N840_4474 N840_4474 nadR nadR 4629216 4630448 + trifunctional protein: nicotinamide mononucleotide adenylyltransferase%2C ribosylnicotinamide kinase%2C transcriptional repressor probable nadAB transcriptional regulator gene gene4494 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4474 N840_4475 N840_4475 yjjK yjjK 4630756 4632423 - fused predicted transporter subunits of ABC superfamily: ATP-binding components putative ATP-binding component of a transport system gene gene4495 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4475 N840_4476 N840_4476 slt slt 4632634 4634571 + lytic murein transglycosylase%2C soluble soluble lytic murein transglycosylase gene gene4496 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4476 N840_4477 N840_4477 trpR trpR 4634661 4634987 + DNA-binding transcriptional repressor%2C tryptophan-binding protein regulator for trp operon and aroH%3B trp aporepressor gene gene4497 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4477 N840_4478 N840_4478 yjjX yjjX 4635134 4635646 - inosine/xanthosine triphosphatase gene gene4498 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4478 N840_4479 N840_4479 ytjC ytjC 4635698 4636345 + phosphatase phosphoglyceromutase 2 gene gene4499 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4479 N840_4480 N840_4480 rob rob 4636342 4637211 - right oriC-binding transcriptional activator%2C AraC family right origin-binding protein gene gene4500 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4480 N840_4481 N840_4481 creA creA 4637422 4637895 + creA gene gene4501 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4481 N840_4482 N840_4482 creB creB 4637908 4638597 + DNA-binding response regulator in two-component regulatory system with CreC catabolic regulation response regulator gene gene4502 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4482 N840_4483 N840_4483 creC creC 4638597 4640021 + sensory histidine kinase in two-component regulatory system with CreB or PhoB%2C regulator of the CreBC regulon catabolite repression sensor kinase for PhoB%3B alternative sensor for pho regulon gene gene4503 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4483 N840_4484 N840_4484 creD creD 4640079 4641431 + inner membrane protein tolerance to colicin E2 gene gene4504 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4484 N840_4485 N840_4485 arcA arcA 4641491 4642207 - DNA-binding response regulator in two-component regulatory system with ArcB or CpxA negative response regulator of genes in aerobic pathways%2C (sensors%2C ArcB and CpxA) gene gene4505 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4485 N840_4486 N840_4486 yjjY yjjY 4642303 4642443 + yjjY gene gene4506 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4486 N840_4487 N840_4487 yjtD yjtD 4642843 4643529 + putative methyltransferase gene gene4507 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4487 N840_4488 N840_4488 int int 805315 806385 - integration protein gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4488 N840_4489 N840_4489 bla bla 816413 817273 + resistance to beta-lactam antibiotics Inserted in Lajoie et al%2C 2013 gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4489 N840_4490 N840_4490 bet bet 809528 810313 - bet gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4490 N840_4491 N840_4491 cI cI 814730 815443 - repressor gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4491 N840_4492 N840_4492 exo exo 808851 809531 - exonuclease gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4492 N840_4493 N840_4493 tetR tetR 815705 816328 + tetracycline repressor Inserted in Lajoie et al%2C 2013 gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4493 N840_4494 N840_4494 sieB sieB 811985 812539 + Superinfection exclusion protein B Predicted by GeneMark gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4494 N840_4495 N840_4495 ea22 ea22 807350 807898 - ea22 gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4495 N840_4496 N840_4496 gam gam 810319 810735 - host-nuclease inhibitor protein Gam gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4496 N840_4497 N840_4497 N N 812540 812941 - early gene regulator gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4497 N840_4498 N840_4498 ea10 ea10 811039 811407 - Putative single-stranded DNA binding protein gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4498 N840_4499 N840_4499 ea8.5 ea8.5 806877 807158 - ea8.5 gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4499 N840_4500 N840_4500 xis xis 806363 806581 - Excisionase gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4500 N840_4501 N840_4501 ral ral 811590 811790 - restriction alleviation protein gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4501 N840_4502 N840_4502 N840_4502 808508 808699 - orf63 orf63 gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4502 N840_4503 N840_4503 N840_4503 808342 808527 - orf61 orf61 gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4503 N840_4504 N840_4504 N840_4504 808672 808854 - orf60a orf60a gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4504 N840_4505 N840_4505 cIII cIII 810802 810966 - antitermination protein gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4505 N840_4506 N840_4506 kil kil 810690 810833 - host-killing protein gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4506 N840_4507 N840_4507 N840_4507 811774 811860 - orf28 orf28 gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=N840_4507