locus-tag	class	description
JCVISYN3A_0025	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JCVISYN3A_0027	COG0360	Binds together with S18 to 16S ribosomal RNA
JCVISYN3A_0043	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JCVISYN3A_0046	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JCVISYN3A_0082	COG0268	Binds directly to 16S ribosomal RNA
JCVISYN3A_0115	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JCVISYN3A_0144	COG0009	L-threonylcarbamoyladenylate synthase
JCVISYN3A_0200	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JCVISYN3A_0202	COG0742	ribosomal rna small subunit methyltransferase
JCVISYN3A_0215	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JCVISYN3A_0253	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JCVISYN3A_0254	COG0322	excinuclease ABC activity
JCVISYN3A_0259	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JCVISYN3A_0291	COG0196	riboflavin kinase activity
JCVISYN3A_0294	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JCVISYN3A_0297	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JCVISYN3A_0299	COG2740	Nucleic-acid-binding protein implicated in transcription termination
JCVISYN3A_0317	COG3763	UPF0154 protein
JCVISYN3A_0328	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JCVISYN3A_0329	COG1187	pseudouridine synthase activity
JCVISYN3A_0350	COG0776	regulation of translation
JCVISYN3A_0381	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JCVISYN3A_0404	COG1381	Involved in DNA repair and RecF pathway recombination
JCVISYN3A_0410	COG0513	Belongs to the DEAD box helicase family
JCVISYN3A_0413	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JCVISYN3A_0419	COG0416	fatty acid biosynthetic process
JCVISYN3A_0448	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JCVISYN3A_0499	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JCVISYN3A_0500	COG2868	ribosomal protein
JCVISYN3A_0517	COG0564	pseudouridine synthase activity
JCVISYN3A_0522	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JCVISYN3A_0536	COG0233	cytoplasmic translational termination
JCVISYN3A_0541	COG0484	heat shock protein binding
JCVISYN3A_0543	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JCVISYN3A_0621	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JCVISYN3A_0637	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JCVISYN3A_0642	COG1122	ATPase activity
JCVISYN3A_0645	COG0202	RNA polymerase activity
JCVISYN3A_0651	COG0563	adenylate kinase activity
JCVISYN3A_0653	COG0200	Binds to the 23S rRNA
JCVISYN3A_0654	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JCVISYN3A_0655	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JCVISYN3A_0656	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JCVISYN3A_0659	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JCVISYN3A_0671	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JCVISYN3A_0672	COG0051	transcription antitermination factor activity, RNA binding
JCVISYN3A_0684	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JCVISYN3A_0789	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JCVISYN3A_0790	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JCVISYN3A_0793	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JCVISYN3A_0794	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JCVISYN3A_0795	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JCVISYN3A_0799	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JCVISYN3A_0806	COG0222	ribosome binding
JCVISYN3A_0810	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JCVISYN3A_0813	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JCVISYN3A_0817	COG1481	regulation of sporulation
JCVISYN3A_0819	COG0492	ferredoxin-NADP+ reductase activity
JCVISYN3A_0831	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JCVISYN3A_0833	COG0359	binds to the 23S rRNA
JCVISYN3A_0909	COG0594	ribonuclease P activity
JCVISYN3A_0931	COG0529	Catalyzes the synthesis of activated sulfate